Psyllid ID: psy4651

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
Protein Sequence
MGEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVAAISRKKYV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFipflnekslkhpyplffpRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRtkggsvargssplKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVAAISRKKYV
Flexible Loop (DISEMBL)
mgeqidqlnklktkrKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLldqigeggrniHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEaennalkggkkaiQKLEQRVRELeneldgeqrrhadaqknlrkterrikelsfqaeedrknhermqDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIrtkggsvargssplKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEialdhankvrvaaisrkkyv
Low Complexity Region (SEG)
MGEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRanaianaaekkakaidkiiGEWKLKVSLQLEVDRanaianaaekkakaidkiiGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRanaianaaekkakaidkiiGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDelqaaleeaeaaleqeeNKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALeeeqrarddareqLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLneaknseekakkaMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQieeaeeiaalnlaKFRKaqqeleeaeeradlaeqaVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVlhlflleeefeNTRKNHQRALDSMQasleaeakgkaealRMKKKLEADINELEIALDHANKVRVAAISRKKYV
Disordered region (IsUnstruct)
**********************************VIAL******LATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAY*********************************************************************************************************************************************************************************************************************************************************************************************************************************************AAL*****************************************PLKLVCSVTFCRQITVQITSKLVLHLFLLEEE*****************************************ELEIALDHANKVRV*********
Disordered Region (DISOPRED)
*G*Q*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KK**
Disordered Region (DISEMBL)
MGEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ**********ELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA**********LRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKA*************AEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVAAISRKKYV
Disordered Region (DISPRO)
*GEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVA********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEQIDQLNKLKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKAIDKIIGEWKLxxxxxxxxxxxxxxxxxxxxxAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKAIDKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGEGGRNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLxxxxxxxxxxxxxxxxxxxxxLEAEAKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVAAISRKKYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	721	2.2.26 [Sep-21-2011]
P05661	1962	Myosin heavy chain, muscl	yes	N/A	0.504	0.185	0.770	1e-145
P24733	1938	Myosin heavy chain, stria	N/A	N/A	0.647	0.240	0.520	1e-140
Q076A5	1939	Myosin-4 OS=Canis familia	yes	N/A	0.815	0.303	0.426	1e-123
Q9UKX2	1941	Myosin-2 OS=Homo sapiens	yes	N/A	0.815	0.302	0.430	1e-123
Q8MJV1	1937	Myosin-2 OS=Equus caballu	yes	N/A	0.815	0.303	0.433	1e-122
Q9TV61	1939	Myosin-1 OS=Sus scrofa GN	yes	N/A	0.815	0.303	0.425	1e-122
P13535	1937	Myosin-8 OS=Homo sapiens	no	N/A	0.815	0.303	0.432	1e-122
Q8MJV0	1938	Myosin-1 OS=Equus caballu	yes	N/A	0.815	0.303	0.427	1e-122
Q5SX40	1942	Myosin-1 OS=Mus musculus	no	N/A	0.815	0.302	0.426	1e-122
Q9TV63	1939	Myosin-2 OS=Sus scrofa GN	yes	N/A	0.815	0.303	0.427	1e-122

>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1 SV=4

 Score =  516 bits (1330), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 298/387 (77%), Positives = 325/387 (83%), Gaps = 23/387 (5%)

Query: 249  EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
            +E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A 
Sbjct: 1576 QEKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA- 1631

Query: 309  AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVE 368
                             ++ANAEAQKNIKRYQQQLKD+QTALEEEQRARDDAREQLGI E
Sbjct: 1632 -----------------NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISE 1674

Query: 369  RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQ 428
            RRANALQNELEESR LLEQADRGRRQAE ELADAHEQLNE+SAQ  SISAAKRKLE ELQ
Sbjct: 1675 RRANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQ 1734

Query: 429  TLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQI 488
            TLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+
Sbjct: 1735 TLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQV 1794

Query: 489  RLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAE 548
            RLDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERR+KELSFQ+E
Sbjct: 1795 RLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSE 1854

Query: 549  EDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQ 608
            EDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQ
Sbjct: 1855 EDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQ 1914

Query: 609  AVSKIRTKG--GSVARGSSPLKLVCSV 633
            A+SK R KG  GSV RG+SP     SV
Sbjct: 1915 AISKFRAKGRAGSVGRGASPAPRATSV 1941

Muscle contraction.
Drosophila melanogaster (taxid: 7227)

>sp|P24733|MYS_ARGIR Myosin heavy chain, striated muscle OS=Argopecten irradians PE=1 SV=1

 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/534 (52%), Positives = 364/534 (68%), Gaps = 67/534 (12%)

Query: 150  RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
            +RKL  +L+EAE+T E+ N K  ALEK K RL  E+ED+ +EVDRANA  N  EKK +A 
Sbjct: 1387 KRKLLGKLSEAEQTTEAANAKCSALEKAKSRLQQELEDMSIEVDRANASVNQMEKKQRAF 1446

Query: 210  DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
            DK   EW+ KV+ L +EL+ SQKE R YS EL+R+K + EE Q+ + A+RRENKNLADE+
Sbjct: 1447 DKTTAEWQAKVNSLQSELENSQKESRGYSAELYRIKASIEEYQDSIGALRRENKNLADEI 1506

Query: 270  KDLLDQIGEGGRNIHEVEKARKRLEVEKDEL----------------------------- 300
             DL DQ+ EGGR+ HE++KAR+RLE+EK+EL                             
Sbjct: 1507 HDLTDQLSEGGRSTHELDKARRRLEMEKEELQAALEEAEGALEQEEAKVMRAQLEIATVR 1566

Query: 301  ---------------------QAALEEAEAALEQE--------------ENKVLRAQLEL 325
                                 Q ALE  +A+LE E              E  +   ++ L
Sbjct: 1567 NEIDKRIQEKEEEFDNTRRNHQRALESMQASLEAEAKGKADAMRIKKKLEQDINELEVAL 1626

Query: 326  SQAN---AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESR 382
              +N   AE +K +KRYQQQ++++QT++EEEQR RD+ARE   + ERR   +  E+EE R
Sbjct: 1627 DASNRGKAEMEKTVKRYQQQIREMQTSIEEEQRQRDEARESYNMAERRCTLMSGEVEELR 1686

Query: 383  QLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK 442
              LEQA+R R+ ++ ELADA++++NEL++Q +S+   KRKLEG++  + +DLDE+  E K
Sbjct: 1687 AALEQAERARKASDNELADANDRVNELTSQVSSVQGQKRKLEGDINAMQTDLDEMHGELK 1746

Query: 443  NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK 502
             ++E+ KKAM DAARLADELRAEQDH+   EK+RK LE+Q+KE QIRLDEAE ++LKGGK
Sbjct: 1747 GADERCKKAMADAARLADELRAEQDHSNQVEKVRKNLESQVKEFQIRLDEAEASSLKGGK 1806

Query: 503  KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
            K IQKLE RV ELE ELD EQRRHA+ QKN+RK +RR+KEL+FQA+EDRKN ER+Q+L+D
Sbjct: 1807 KMIQKLESRVHELEAELDNEQRRHAETQKNMRKADRRLKELAFQADEDRKNQERLQELID 1866

Query: 563  KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
            KL  KIKT+KRQ+EEAEEIAA+NLAK+RKAQ ELEEAEERAD A+  + K R K
Sbjct: 1867 KLNAKIKTFKRQVEEAEEIAAINLAKYRKAQHELEEAEERADTADSTLQKFRAK 1920

Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.

Aequipecten irradians (taxid: 31199)

>sp|Q076A5|MYH4_CANFA Myosin-4 OS=Canis familiaris GN=MYH4 PE=3 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 299/701 (42%), Positives = 421/701 (60%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQL+++KTK + Q RL             E+ E    L++K   V  L + KQ    ++E
Sbjct: 1258 DQLSEVKTKEEEQQRLINELSAQKARLHTESGEFSRQLDEKEALVSQLSRGKQAFTQQIE 1317

Query: 51   DL--QLEVDRA--NAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE +    NA+A+A +      D +  +++ +   + E+ R+ + AN+       
Sbjct: 1318 ELKRQLEEESKAKNALAHALQSARHDCDLLREQYEEEQEAKAELQRSMSKANSE------ 1371

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL EAEE +E+
Sbjct: 1372 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQEAEEHVEA 1410

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL +EVEDL ++V+R+NA   A +KK +  DK++ EWK K ++  AE
Sbjct: 1411 VNSKCSSLEKTKQRLQSEVEDLMIDVERSNAACAALDKKQRNFDKVLAEWKQKYEETQAE 1470

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R  STELF++K AYEE+ + LE ++RENKNL  E+ DL +QI EGG++IHE+
Sbjct: 1471 LEASQKEARALSTELFKVKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKHIHEL 1530

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K+++ EK ELQAALEEAE +LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1531 EKVKKQIDQEKSELQAALEEAEGSLEHEEGKILRIQLELNQVKSEIDRKIAEKDEEIDQL 1590

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +Q+ L+ E R+R+DA                                R  
Sbjct: 1591 KRNHLRVVESMQSTLDAEIRSRNDALRIKKKMEGDLNEMEIQLNHANRQAAEAIRNLRNT 1650

Query: 364  LGI------------------------VERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI                        VERRAN +Q E EE R LLEQ +R R+ AE EL
Sbjct: 1651 QGILKDTQLHLDDAIRGQDDLKEQLAMVERRANLMQAETEELRALLEQTERSRKVAEQEL 1710

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  +  ++++++ EA+N+EEKAKKA+ DAA +A
Sbjct: 1711 LDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMA 1770

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K LE  +K+LQ RLDEAE  ALKGGKK IQKLE RVRELENE+
Sbjct: 1771 EELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEV 1830

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R+ +A K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K YKRQ EEAE
Sbjct: 1831 ENEQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQTKVKAYKRQAEEAE 1890

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E + +NLAKFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1891 EQSNVNLAKFRKIQHELEEAEERADIAESQVNKLRVKSREV 1931

Muscle contraction.

Canis familiaris (taxid: 9615)

>sp|Q9UKX2|MYH2_HUMAN Myosin-2 OS=Homo sapiens GN=MYH2 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 302/701 (43%), Positives = 419/701 (59%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQL++LK+K + Q RL             E+ E    L++K   V  L + KQ    ++E
Sbjct: 1260 DQLSELKSKEEEQQRLINDLTAQRGRLQTESGEFSRQLDEKEALVSQLSRGKQAFTQQIE 1319

Query: 51   DL--QLE--VDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE  +   NA+A+A +      D +  +++ +   + E+ RA + AN        
Sbjct: 1320 ELKRQLEEEIKAKNALAHALQSSRHDCDLLREQYEEEQESKAELQRALSKANTE------ 1373

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL  AEE +E+
Sbjct: 1374 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQAAEEHVEA 1412

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL  EVEDL L+V+R NA   A +KK +  DKI+ EWK K ++  AE
Sbjct: 1413 VNAKCASLEKTKQRLQNEVEDLMLDVERTNAACAALDKKQRNFDKILAEWKQKCEETHAE 1472

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R+  TELF++K AYEE+ +QLE ++RENKNL  E+ DL +QI EGG+ IHE+
Sbjct: 1473 LEASQKEARSLGTELFKIKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHEL 1532

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K++E EK ELQAALEEAEA+LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1533 EKIKKQVEQEKCELQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQL 1592

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +Q+ L+ E R+R+DA                                R  
Sbjct: 1593 KRNHIRIVESMQSTLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNT 1652

Query: 364  LGIV------------------------ERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI+                        ERRAN LQ E+EE R  LEQ +R R+ AE EL
Sbjct: 1653 QGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQEL 1712

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  +  +++++L EA+N+EEKAKKA+ DAA +A
Sbjct: 1713 LDASERVQLLHTQNTSLINTKKKLETDISQMQGEMEDILQEARNAEEKAKKAITDAAMMA 1772

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K +E  +K+LQ+RLDEAE  ALKGGKK IQKLE RVRELE E+
Sbjct: 1773 EELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELEGEV 1832

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R+A+A K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K+YKRQ EEAE
Sbjct: 1833 ESEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAE 1892

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E +  NLAKFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1893 EQSNTNLAKFRKLQHELEEAEERADIAESQVNKLRVKSREV 1933

Muscle contraction. Required for cytoskeleton organization.

Homo sapiens (taxid: 9606)

>sp|Q8MJV1|MYH2_HORSE Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 304/701 (43%), Positives = 418/701 (59%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQ+++LK+K + Q RL             EA E    L++K   V  L + KQ    ++E
Sbjct: 1256 DQVSELKSKEEEQQRLINDLTAQRGRLQTEAGEFSRQLDEKEALVSQLSRGKQAFTQQIE 1315

Query: 51   DL--QLE--VDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE  +   NA+A+A +      D +  +++ +   + E+ RA + AN+       
Sbjct: 1316 ELKRQLEEEIKAKNALAHALQSSRHDCDLLREQYEEEQESKAELQRALSKANSE------ 1369

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL  AEE +E+
Sbjct: 1370 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQAAEEHVEA 1408

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL  EVEDL L+V+R NA   A +KK +  DKI+ EWK K ++  AE
Sbjct: 1409 VNAKCASLEKTKQRLQNEVEDLMLDVERTNAACAALDKKQRNFDKILAEWKQKYEETHAE 1468

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R+  TELF++K AYEE+ +QLE ++RENKNL  E+ DL +QI EGG+ IHE+
Sbjct: 1469 LEASQKEARSLGTELFKMKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHEL 1528

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K++E EK ELQAALEEAEA+LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1529 EKIKKQVEQEKSELQAALEEAEASLEHEEGKILRIQLELNQVKSEIDRKIAEKDEEIDQL 1588

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +QT L+ E R+R+DA                                R  
Sbjct: 1589 KRNHVRVVETMQTMLDAEIRSRNDAIRIKKKMEGDLNEMEIQLNHANRMAAEALRNYRNT 1648

Query: 364  LGIV------------------------ERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI+                        ERRAN LQ E+EE R  LEQ +R R+ AE EL
Sbjct: 1649 QGILKDTQLHLDDALRGQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQEL 1708

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  L  +++++L EA+N+EEKAKKA+ DAA +A
Sbjct: 1709 LDASERVQLLHTQNTSLINTKKKLETDISQLQGEMEDILQEARNAEEKAKKAITDAAMMA 1768

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K LE  +K+LQ RLDEAE  ALKGGKK IQKLE RVRELE E+
Sbjct: 1769 EELKKEQDTSAHLERMKKNLEQTVKDLQQRLDEAEQLALKGGKKQIQKLEARVRELEGEV 1828

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R A+A K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K+YKRQ EEAE
Sbjct: 1829 ESEQKRSAEAIKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAE 1888

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E +  NL+KFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1889 EQSNTNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREV 1929

Muscle contraction. Required for cytoskeleton organization.

Equus caballus (taxid: 9796)

>sp|Q9TV61|MYH1_PIG Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 298/701 (42%), Positives = 421/701 (60%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQL++LKTK + Q RL             E+ E    L++K   V  L + KQ    ++E
Sbjct: 1258 DQLSELKTKEEEQQRLINDLTAQRARLQTESGEYSRQLDEKDTLVSQLSRGKQAFTQQIE 1317

Query: 51   DL--QLE--VDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE  +   +A+A+A +      D +  +++ +   + E+ RA + AN+       
Sbjct: 1318 ELKRQLEEEIKAKSALAHAVQSSRHDCDLLREQYEEEQEAKAELQRAMSKANSE------ 1371

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL +AEE +E+
Sbjct: 1372 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQDAEEHVEA 1410

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL  EVEDL ++V+R+NA   A +KK +  DKI+ EWK K ++  AE
Sbjct: 1411 VNAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKILAEWKQKYEETHAE 1470

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R+ STELF++K AYEE+ +QLE ++RENKNL  E+ DL +QI EGG+ IHE+
Sbjct: 1471 LEASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHEL 1530

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K++E EK E+QAALEEAEA+LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1531 EKIKKQVEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQL 1590

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +Q+ L+ E R+R+DA                                R  
Sbjct: 1591 KRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNT 1650

Query: 364  LGIV------------------------ERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI+                        ERRAN LQ E+EE R  LEQ +R R+ AE EL
Sbjct: 1651 QGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKVAEQEL 1710

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  +  ++++++ EA+N+EEKAKKA+ DAA +A
Sbjct: 1711 LDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDAAMMA 1770

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K LE  +K+LQ RLDEAE  ALKGGKK IQKLE RVRELE E+
Sbjct: 1771 EELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEV 1830

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R+ +  K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K+YKRQ EEAE
Sbjct: 1831 ESEQKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAE 1890

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E + +NL+KFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1891 EQSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREV 1931

Muscle contraction.

Sus scrofa (taxid: 9823)

>sp|P13535|MYH8_HUMAN Myosin-8 OS=Homo sapiens GN=MYH8 PE=1 SV=3

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 303/701 (43%), Positives = 421/701 (60%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQ+++LKTK + Q RL             EA E    L++K   V  L ++KQ    ++E
Sbjct: 1257 DQVSELKTKEEEQQRLINDLTAQRARLQTEAGEYSRQLDEKDALVSQLSRSKQASTQQIE 1316

Query: 51   DL--QLE--VDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE      NA+A+A +      D +  +++ +   + E+ RA + AN+       
Sbjct: 1317 ELKHQLEEETKAKNALAHALQSSRHDCDLLREQYEEEQEGKAELQRALSKANSE------ 1370

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL EAEE +E+
Sbjct: 1371 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQEAEEHVEA 1409

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL  EVEDL L+V+R+NA   A +KK +  DK++ EWK K ++  AE
Sbjct: 1410 VNAKCASLEKTKQRLQNEVEDLMLDVERSNAACAALDKKQRNFDKVLSEWKQKYEETQAE 1469

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R+ STELF++K  YEE+ +QLE +RRENKNL  E+ DL +QI EGG+ IHE+
Sbjct: 1470 LEASQKESRSLSTELFKVKNVYEESLDQLETLRRENKNLQQEISDLTEQIAEGGKQIHEL 1529

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K++E EK E+QAALEEAEA+LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1530 EKIKKQVEQEKCEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQL 1589

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +Q+ L+ E R+R+DA                                R  
Sbjct: 1590 KRNHTRVVETMQSTLDAEIRSRNDALRVKKKMEGDLNEMEIQLNHANRLAAESLRNYRNT 1649

Query: 364  LGIV------------------------ERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI+                        ERRAN LQ E+EE    LEQ +R R+ AE EL
Sbjct: 1650 QGILKETQLHLDDALRGQEDLKEQLAIVERRANLLQAEIEELWATLEQTERSRKIAEQEL 1709

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  L S+++E++ E++N+EEKAKKA+ DAA +A
Sbjct: 1710 LDASERVQLLHTQNTSLINTKKKLENDVSQLQSEVEEVIQESRNAEEKAKKAITDAAMMA 1769

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K LE  +K+LQ RLDEAE  ALKGGKK IQKLE RVRELE E+
Sbjct: 1770 EELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEV 1829

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R+A+A K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K+YKRQ EEAE
Sbjct: 1830 ENEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAE 1889

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E +  NL+KFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1890 EQSNANLSKFRKLQHELEEAEERADIAESQVNKLRVKSREV 1930

Muscle contraction.

Homo sapiens (taxid: 9606)

>sp|Q8MJV0|MYH1_HORSE Myosin-1 OS=Equus caballus GN=MYH1 PE=2 SV=1

 Score =  439 bits (1130), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 300/701 (42%), Positives = 419/701 (59%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQL++LK+K + Q RL             EA E    L++K   V  L + KQ    ++E
Sbjct: 1257 DQLSELKSKEEEQQRLVNDLTGQRARLQTEAGEYSRQLDEKDSLVSQLSRGKQAFTQQIE 1316

Query: 51   DL--QLE--VDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE  +   +A+A+A +      D +  +++ +   + E+ RA + AN+       
Sbjct: 1317 ELKRQLEEEIKAKSALAHALQSARHDCDLLREQYEEEQEAKAELQRAMSKANSE------ 1370

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL +AEE +E+
Sbjct: 1371 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQDAEEHVEA 1409

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL  EVEDL ++V+R NA   A +KK +  DKI+ EWK K ++  AE
Sbjct: 1410 VNAKCASLEKTKQRLQNEVEDLMIDVERTNAACAALDKKQRNFDKILSEWKHKYEETHAE 1469

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R+ STELF++K AYEE+ +QLE ++RENKNL  E+ DL +QI EGG+ IHE+
Sbjct: 1470 LEASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHEL 1529

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K++E EK E+QAALEEAEA+LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1530 EKVKKQIEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEIDRKIAEKDEEIDQL 1589

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +QT L+ E R+R+DA                                R  
Sbjct: 1590 KRNHVRVVETMQTMLDAEIRSRNDAIRIKKKMEGDLNEMEIQLNHANRMAAEALRNYRNT 1649

Query: 364  LGIV------------------------ERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI+                        ERRAN LQ E+EE R  LEQ +R R+ AE EL
Sbjct: 1650 QGILKDTQLHLDDALRGQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQEL 1709

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  L  ++++++ EA N+EEKAKKA+ DAA +A
Sbjct: 1710 LDASERVQLLHTQNTSLINTKKKLETDISQLQGEMEDIVQEAHNAEEKAKKAITDAAMMA 1769

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K LE  +K+LQ RLDEAE  ALKGGKK IQKLE RVR+LE E+
Sbjct: 1770 EELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRDLEGEV 1829

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R+ +A K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K YKRQ EEAE
Sbjct: 1830 ESEQKRNVEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQSKVKAYKRQAEEAE 1889

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E + +NL+KFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1890 EQSNVNLSKFRKIQHELEEAEERADIAESQVNKLRVKSREV 1930

Muscle contraction.

Equus caballus (taxid: 9796)

>sp|Q5SX40|MYH1_MOUSE Myosin-1 OS=Mus musculus GN=Myh1 PE=1 SV=1

 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 299/701 (42%), Positives = 419/701 (59%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQ+++LKTK + Q RL             E+ E    L++K   V  L + KQ    ++E
Sbjct: 1261 DQVSELKTKEEEQQRLINELTAQRGRLQTESGEYSRQLDEKDSLVSQLSRGKQAFTQQIE 1320

Query: 51   DL--QLE--VDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE  +   +A+A+A +      D +  +++ +   + E+ RA + AN+       
Sbjct: 1321 ELKRQLEEEIKAKSALAHALQSSRHDCDLLREQYEEEQEAKAELQRAMSKANSE------ 1374

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL +AEE +E+
Sbjct: 1375 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQDAEEHVEA 1413

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL  EVEDL ++V+R NA   A +KK +  DKI+ EWK K ++  AE
Sbjct: 1414 VNAKCASLEKTKQRLQNEVEDLMIDVERTNAACAALDKKQRNFDKILAEWKQKYEETHAE 1473

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R+ STELF++K AYEE+ + LE ++RENKNL  E+ DL +QI EGG+ IHE+
Sbjct: 1474 LEASQKESRSLSTELFKIKNAYEESLDHLETLKRENKNLQQEISDLTEQIAEGGKRIHEL 1533

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K++E EK ELQAALEEAEA+LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1534 EKIKKQIEQEKSELQAALEEAEASLEHEEGKILRIQLELNQVKSEIDRKIAEKDEEIDQL 1593

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +Q+ L+ E R+R+DA                                R  
Sbjct: 1594 KRNHIRVVESMQSTLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHSNRMAAEALRNYRNT 1653

Query: 364  LGIV------------------------ERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI+                        ERRAN LQ E+EE R  LEQ +R R+ AE EL
Sbjct: 1654 QGILKDTQLHLDDALRGQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQEL 1713

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  +  ++++++ EA+N+EEKAKKA+ DAA +A
Sbjct: 1714 LDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMA 1773

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K LE  +K+LQ RLDEAE  ALKGGKK IQKLE RVRELE E+
Sbjct: 1774 EELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEV 1833

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R+ +A K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K YKRQ EEAE
Sbjct: 1834 ENEQKRNVEAIKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAE 1893

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E + +NLAKFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1894 EQSNVNLAKFRKIQHELEEAEERADIAESQVNKLRVKSREV 1934

Muscle contraction.

Mus musculus (taxid: 10090)

>sp|Q9TV63|MYH2_PIG Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 300/701 (42%), Positives = 418/701 (59%), Gaps = 113/701 (16%)

Query: 6    DQLNKLKTKRKLQARL------------AEAEETIESLNQK---VIALEKTKQRLATEVE 50
            DQL++LK+K + Q RL             E+ E    L++K   V  L + KQ    ++E
Sbjct: 1258 DQLSELKSKEEEQQRLINDLTAQRGRLQTESGEFSRQLDEKEALVSQLSRGKQAYTQQIE 1317

Query: 51   DL--QLE--VDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKA 106
            +L  QLE  +   NA+A+A +      D +  +++ +   + E+ RA + AN        
Sbjct: 1318 ELKRQLEEEIKAKNALAHALQSSRHDCDLLREQYEEEQESKAELQRALSKANTE------ 1371

Query: 107  IDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIES 166
                + +W+ K   D                 +++    L   ++KL  RL  AEE +E+
Sbjct: 1372 ----VAQWRTKYETD-----------------AIQRTEELEEAKKKLAQRLQAAEEHVEA 1410

Query: 167  LNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAE 226
            +N K  +LEKTKQRL  EVEDL L+V+R NA   A +KK +  DKI+ EWK K ++  AE
Sbjct: 1411 VNAKCASLEKTKQRLQNEVEDLMLDVERTNAACAALDKKQRNFDKILAEWKQKYEETHAE 1470

Query: 227  LDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEV 286
            L+ASQKE R+  TELF++K AYEE+ +QLE ++RENKNL  E+ DL +QI EGG+ IHE+
Sbjct: 1471 LEASQKEARSLGTELFKMKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHEL 1530

Query: 287  EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI---------- 336
            EK +K++E EK E+QAALEEAEA+LE EE K+LR QLEL+Q  +E  + I          
Sbjct: 1531 EKIKKQVEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQL 1590

Query: 337  -KRYQQQLKDVQTALEEEQRARDDA--------------------------------REQ 363
             + + + ++ +Q+ L+ E R+R+DA                                R  
Sbjct: 1591 KRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNT 1650

Query: 364  LGIV------------------------ERRANALQNELEESRQLLEQADRGRRQAETEL 399
             GI+                        ERRAN LQ E+EE R  LEQ +R R+ AE EL
Sbjct: 1651 QGILKDTQIHLDDALRGQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKVAEQEL 1710

Query: 400  ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             DA E++  L  Q TS+   K+KLE ++  +  +++++L EA+N+EEKAKKA+ DAA +A
Sbjct: 1711 LDASERVQLLHTQNTSLINTKKKLETDISQMQGEMEDILQEARNAEEKAKKAITDAAMMA 1770

Query: 460  DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
            +EL+ EQD +   E+++K +E  +K+LQ RLDEAE  ALKGGKK IQKLE RVRELE E+
Sbjct: 1771 EELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEV 1830

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE 579
            + EQ+R+A+A K LRK ERR+KEL++Q EEDRKN  R+QDLVDKLQ K+K+YKRQ EEAE
Sbjct: 1831 ESEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAE 1890

Query: 580  EIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
            E +  NL+KFRK Q ELEEAEERAD+AE  V+K+R K   V
Sbjct: 1891 EQSNTNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREV 1931

Muscle contraction. Required for cytoskeleton organization.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
242006231	1978	myosin-9, putative [Pediculus humanus co	0.682	0.248	0.721	0.0
312370898	755	hypothetical protein AND_22909 [Anophele	0.798	0.762	0.633	0.0
2546939	1201	muscle myosin heavy chain [Drosophila me	0.758	0.455	0.616	1e-167
2546938	1201	muscle myosin heavy chain [Drosophila me	0.758	0.455	0.616	1e-167
2546936	1175	muscle myosin heavy chain [Drosophila me	0.748	0.459	0.620	1e-167
2546937	1175	muscle myosin heavy chain [Drosophila me	0.748	0.459	0.620	1e-167
195579654	749	GD24081 [Drosophila simulans] gi|1941916	0.758	0.730	0.613	1e-166
289742061	761	myosin heavy chain [Glossina morsitans m	0.758	0.718	0.615	1e-166
307190724	1141	Myosin heavy chain, muscle [Camponotus f	0.750	0.474	0.617	1e-165
234204034	918	myosin heavy chain variant C [Bombyx man	0.748	0.588	0.613	1e-158

>gi|242006231|ref|XP_002423957.1| myosin-9, putative [Pediculus humanus corporis] gi|212507227|gb|EEB11219.1| myosin-9, putative [Pediculus humanus corporis]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/571 (72%), Positives = 441/571 (77%), Gaps = 79/571 (13%)

Query: 150  RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
            +RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA AIANAAEKK KA 
Sbjct: 1390 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRATAIANAAEKKQKAF 1449

Query: 210  DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
            DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK AYEE QEQLEAVRRENKNLADEV
Sbjct: 1450 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKNAYEEGQEQLEAVRRENKNLADEV 1509

Query: 270  KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
            KDLLDQIGEGGRNIHE+EKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ  
Sbjct: 1510 KDLLDQIGEGGRNIHEIEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQVR 1569

Query: 330  AEAQKNI-----------KRYQQQLKDVQTALEEEQRARDDAREQLGIVE---------- 368
             E  + I           K +Q+ L  +Q +LE E + R +A      +E          
Sbjct: 1570 QEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGRAEALRMKKKLEADINELEIAL 1629

Query: 369  ---RRANA--------LQNELEESRQLLEQADRGR------------------------- 392
                +ANA         Q +L++ +  LE+  R R                         
Sbjct: 1630 DHANKANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIAERRANALQNELEESR 1689

Query: 393  ----------RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK 442
                      RQAE EL+DAHEQLNELSAQ  S+SAAKRKLE ELQTLHSDLDELLNEAK
Sbjct: 1690 TLLEQADRGRRQAEQELSDAHEQLNELSAQNASMSAAKRKLESELQTLHSDLDELLNEAK 1749

Query: 443  NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK 502
            NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIK+LQ+RLDEAE NALKGGK
Sbjct: 1750 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKDLQVRLDEAEANALKGGK 1809

Query: 503  KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
            KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD
Sbjct: 1810 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 1869

Query: 563  KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVAR 622
            KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD AEQA++K R KG +   
Sbjct: 1870 KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADFAEQAIAKFRQKGRA--- 1926

Query: 623  GSSPLKLVCSVTFCRQITVQITSKLVLHLFL 653
            GS+P  L  +V+          SKLV++L+ 
Sbjct: 1927 GSAPRALSPAVS---------VSKLVINLYF 1948

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370898|gb|EFR19201.1| hypothetical protein AND_22909 [Anopheles darlingi]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/669 (63%), Positives = 480/669 (71%), Gaps = 93/669 (13%)

Query: 28  IESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQ 87
           +E    +V  L K K  L  ++ED +            A+++A+    ++G+++      
Sbjct: 75  LEDAESQVSQLSKIKISLTQQLEDTK----------RLADEEARERATLLGKFR-----N 119

Query: 88  LEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLF 147
           LE D  N +    E++A+      G+  ++  L   N    L    + +E  +     L 
Sbjct: 120 LEHDLDN-LREQVEEEAE------GKGDIQRQLSKANAEAQLWRSKYESE-GVARAEELE 171

Query: 148 FPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 207
             +RKLQARLAEAEETIESLNQK IALEKTKQRLATEVEDLQLEVDRA++IANAAEKK K
Sbjct: 172 EAKRKLQARLAEAEETIESLNQKCIALEKTKQRLATEVEDLQLEVDRASSIANAAEKKQK 231

Query: 208 AIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD 267
           A DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEE QEQLEAVRRENKNLAD
Sbjct: 232 AFDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEGQEQLEAVRRENKNLAD 291

Query: 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQ 327
           EVKDLLDQIGEGGRNIHE+EK+RKRLE EKDELQAALEEAEAALEQEENKVLRAQLELSQ
Sbjct: 292 EVKDLLDQIGEGGRNIHEIEKSRKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQ 351

Query: 328 ANAEAQKNI-----------KRYQQQLKDVQTALEEEQRARDDAREQLGIVE-------- 368
              E  + I           K +Q+ L  +Q +LE E + + +A      +E        
Sbjct: 352 VRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEI 411

Query: 369 -----RRANA--------LQNELEESRQLLEQADRGR----------------------- 392
                 +ANA         Q +L++ +  LE+  R R                       
Sbjct: 412 ALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNELEE 471

Query: 393 ------------RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
                       RQAE EL+DAHEQLNE+SAQ  SI+AAKRKLE ELQTLHSDLDELLNE
Sbjct: 472 SRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELLNE 531

Query: 441 AKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKG 500
           AKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+RLDEAE+NALKG
Sbjct: 532 AKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAESNALKG 591

Query: 501 GKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL 560
           GKKAIQKLEQRVRELE+ELD EQRRHADAQKNLRK+ERRIKEL+FQ+EEDRKNHERMQDL
Sbjct: 592 GKKAIQKLEQRVRELESELDSEQRRHADAQKNLRKSERRIKELTFQSEEDRKNHERMQDL 651

Query: 561 VDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKG--- 617
           VDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD+AEQA +K RTKG   
Sbjct: 652 VDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADIAEQAATKFRTKGGRA 711

Query: 618 GSVARGSSP 626
           GSV RG+SP
Sbjct: 712 GSVQRGASP 720

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2546939|emb|CAA37311.1| muscle myosin heavy chain [Drosophila melanogaster]

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 386/626 (61%), Positives = 443/626 (70%), Gaps = 79/626 (12%)

Query: 14   KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
            KRKLQARLAEAEETIESLNQK I LEKTKQRL+TEVEDLQLE                  
Sbjct: 628  KRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLE------------------ 669

Query: 74   DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                            VDRANAIANAAEKK KA DKIIGEWKLK     ++ L   L   
Sbjct: 670  ----------------VDRANAIANAAEKKQKAFDKIIGEWKLK-----VDDLAAELDA- 707

Query: 134  FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
              ++K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 708  --SQKECRNYSTELF---RLKGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 755

Query: 194  RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                  +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 756  EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQ 815

Query: 250  EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
            E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 816  EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 870

Query: 310  ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                            ++ANAEAQKNIKRYQQQLKD+QTALEEEQRARDDAREQLGI ER
Sbjct: 871  ----------------NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER 914

Query: 370  RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
            RANALQNELEESR LLEQADRGRRQAE ELADAHEQLNE+SAQ  SISAAKRKLE ELQT
Sbjct: 915  RANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQT 974

Query: 430  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
            LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+R
Sbjct: 975  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVR 1034

Query: 490  LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
            LDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERR+KELSFQ+EE
Sbjct: 1035 LDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSEE 1094

Query: 550  DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
            DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 1095 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 1154

Query: 610  VSKIRTKG--GSVARGSSPLKLVCSV 633
            +SK R KG  GSV RG+SP     SV
Sbjct: 1155 ISKFRAKGRAGSVGRGASPAPRATSV 1180

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2546938|emb|CAA37310.1| muscle myosin heavy chain [Drosophila melanogaster]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 386/626 (61%), Positives = 443/626 (70%), Gaps = 79/626 (12%)

Query: 14   KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
            KRKLQARLAEAEETIESLNQK I LEKTKQRL+TEVEDLQLE                  
Sbjct: 628  KRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLE------------------ 669

Query: 74   DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                            VDRANAIANAAEKK KA DKIIGEWKLK     ++ L   L   
Sbjct: 670  ----------------VDRANAIANAAEKKQKAFDKIIGEWKLK-----VDDLAAELDA- 707

Query: 134  FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
              ++K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 708  --SQKECRNYSTELF---RLKGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 755

Query: 194  RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                  +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 756  EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQ 815

Query: 250  EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
            E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 816  EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 870

Query: 310  ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                            ++ANAEAQKNIKRYQQQLKD+QTALEEEQRARDDAREQLGI ER
Sbjct: 871  ----------------NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER 914

Query: 370  RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
            RANALQNELEESR LLEQADRGRRQAE ELADAHEQLNE+SAQ  SISAAKRKLE ELQT
Sbjct: 915  RANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQT 974

Query: 430  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
            LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+R
Sbjct: 975  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVR 1034

Query: 490  LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
            LDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERR+KELSFQ+EE
Sbjct: 1035 LDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSEE 1094

Query: 550  DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
            DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 1095 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 1154

Query: 610  VSKIRTKG--GSVARGSSPLKLVCSV 633
            +SK R KG  GSV RG+SP     SV
Sbjct: 1155 ISKFRAKGRAGSVGRGASPAPRATSV 1180

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2546936|emb|CAA37308.1| muscle myosin heavy chain [Drosophila melanogaster]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 384/619 (62%), Positives = 440/619 (71%), Gaps = 79/619 (12%)

Query: 14   KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
            KRKLQARLAEAEETIESLNQK I LEKTKQRL+TEVEDLQLE                  
Sbjct: 628  KRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLE------------------ 669

Query: 74   DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                            VDRANAIANAAEKK KA DKIIGEWKLK     ++ L   L   
Sbjct: 670  ----------------VDRANAIANAAEKKQKAFDKIIGEWKLK-----VDDLAAELDAS 708

Query: 134  FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
               +K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 709  ---QKECRNYSTELF---RLKGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 755

Query: 194  RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                  +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 756  EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQ 815

Query: 250  EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
            E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 816  EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 870

Query: 310  ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                            ++ANAEAQKNIKRYQQQLKD+QTALEEEQRARDDAREQLGI ER
Sbjct: 871  ----------------NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER 914

Query: 370  RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
            RANALQNELEESR LLEQADRGRRQAE ELADAHEQLNE+SAQ  SISAAKRKLE ELQT
Sbjct: 915  RANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQT 974

Query: 430  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
            LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+R
Sbjct: 975  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVR 1034

Query: 490  LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
            LDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERR+KELSFQ+EE
Sbjct: 1035 LDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSEE 1094

Query: 550  DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
            DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 1095 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 1154

Query: 610  VSKIRTKG--GSVARGSSP 626
            +SK R KG  GSV RG+SP
Sbjct: 1155 ISKFRAKGRAGSVGRGASP 1173

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2546937|emb|CAA37309.1| muscle myosin heavy chain [Drosophila melanogaster]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 384/619 (62%), Positives = 440/619 (71%), Gaps = 79/619 (12%)

Query: 14   KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
            KRKLQARLAEAEETIESLNQK I LEKTKQRL+TEVEDLQLE                  
Sbjct: 628  KRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLE------------------ 669

Query: 74   DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                            VDRANAIANAAEKK KA DKIIGEWKLK     ++ L   L   
Sbjct: 670  ----------------VDRANAIANAAEKKQKAFDKIIGEWKLK-----VDDLAAELDAS 708

Query: 134  FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
               +K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 709  ---QKECRNYSTELF---RLKGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 755

Query: 194  RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                  +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 756  EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQ 815

Query: 250  EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
            E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 816  EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 870

Query: 310  ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                            ++ANAEAQKNIKRYQQQLKD+QTALEEEQRARDDAREQLGI ER
Sbjct: 871  ----------------NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER 914

Query: 370  RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
            RANALQNELEESR LLEQADRGRRQAE ELADAHEQLNE+SAQ  SISAAKRKLE ELQT
Sbjct: 915  RANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQT 974

Query: 430  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
            LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+R
Sbjct: 975  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVR 1034

Query: 490  LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
            LDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERR+KELSFQ+EE
Sbjct: 1035 LDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSEE 1094

Query: 550  DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
            DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 1095 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 1154

Query: 610  VSKIRTKG--GSVARGSSP 626
            +SK R KG  GSV RG+SP
Sbjct: 1155 ISKFRAKGRAGSVGRGASP 1173

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195579654|ref|XP_002079676.1| GD24081 [Drosophila simulans] gi|194191685|gb|EDX05261.1| GD24081 [Drosophila simulans]

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 384/626 (61%), Positives = 442/626 (70%), Gaps = 79/626 (12%)

Query: 14  KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
           KRKLQARLAEAEETIESLNQK I LEKTKQRL+TEVEDLQLE                  
Sbjct: 176 KRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLE------------------ 217

Query: 74  DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                           VDRANAIANAAEKK KA DKIIGEWKLK     ++ L   L   
Sbjct: 218 ----------------VDRANAIANAAEKKQKAFDKIIGEWKLK-----VDDLAAELDA- 255

Query: 134 FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
             ++K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 256 --SQKECRNYSTELF---RLKGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 303

Query: 194 RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                 +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 304 EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQ 363

Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
           E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 364 EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 418

Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                           ++ANAEAQKNIKRYQQQL D+QTAL+EEQRARDDAREQLGI ER
Sbjct: 419 ----------------NKANAEAQKNIKRYQQQLIDIQTALDEEQRARDDAREQLGISER 462

Query: 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
           RANALQNELEESR LLEQADRGRRQAE ELADAHEQLNE+SAQ  SISAAKRKLE ELQT
Sbjct: 463 RANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQT 522

Query: 430 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
           LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+R
Sbjct: 523 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVR 582

Query: 490 LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
           LDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERR+KELSFQ+EE
Sbjct: 583 LDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRVKELSFQSEE 642

Query: 550 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
           DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 643 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 702

Query: 610 VSKIRTKG--GSVARGSSPLKLVCSV 633
           +SK R KG  GSV RG+SP     SV
Sbjct: 703 ISKFRAKGRAGSVGRGASPAPRATSV 728

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742061|gb|ADD19778.1| myosin heavy chain [Glossina morsitans morsitans]

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 385/626 (61%), Positives = 442/626 (70%), Gaps = 79/626 (12%)

Query: 14  KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
           KRKLQARLAEAEETIESLNQK I LEKTKQRL+TEVEDLQLE                  
Sbjct: 188 KRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLE------------------ 229

Query: 74  DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                           VDRANAIANAAEKK KA DKIIGEWKLK     ++ L   L   
Sbjct: 230 ----------------VDRANAIANAAEKKQKAFDKIIGEWKLK-----VDDLAAELDA- 267

Query: 134 FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
             ++K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 268 --SQKECRNYSTELF---RLKGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 315

Query: 194 RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                 +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 316 EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQ 375

Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
           E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 376 EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 430

Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                           ++ANAEAQKNIKRYQQQLKD+QTALEEEQRARDDAREQLGI ER
Sbjct: 431 ----------------NKANAEAQKNIKRYQQQLKDLQTALEEEQRARDDAREQLGISER 474

Query: 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
           RANALQNELEESR LLEQADRGRRQAE ELADAHEQLNE+SAQ  SI+AAKRKLE ELQT
Sbjct: 475 RANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASIAAAKRKLESELQT 534

Query: 430 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
           LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+R
Sbjct: 535 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVR 594

Query: 490 LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
           LDEAE NALKGGKKAIQKLEQR RELENELDGEQRRHADAQKNLRK+ERRIKELSFQ+EE
Sbjct: 595 LDEAEANALKGGKKAIQKLEQRCRELENELDGEQRRHADAQKNLRKSERRIKELSFQSEE 654

Query: 550 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
           DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 655 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 714

Query: 610 VSKIRTK--GGSVARGSSPLKLVCSV 633
           +SK R K  GGSV RG+SP     SV
Sbjct: 715 ISKFRAKGRGGSVGRGASPAPRAMSV 740

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190724|gb|EFN74639.1| Myosin heavy chain, muscle [Camponotus floridanus]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 383/620 (61%), Positives = 440/620 (70%), Gaps = 79/620 (12%)

Query: 14   KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
            KRKLQARLAEAEETIESLNQKVIALEKTKQRL+TEVEDLQ+E                  
Sbjct: 568  KRKLQARLAEAEETIESLNQKVIALEKTKQRLSTEVEDLQIE------------------ 609

Query: 74   DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                            VDRA AIANAAEKK KA DKII EWKLK     ++ L   L   
Sbjct: 610  ----------------VDRATAIANAAEKKQKAFDKIISEWKLK-----VDDLAAELDA- 647

Query: 134  FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
              ++K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 648  --SQKECRNYSTELF---RLRGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 695

Query: 194  RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                  +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 696  EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRSQLELSQVRQEIDRRIQ 755

Query: 250  EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
            E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 756  EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 810

Query: 310  ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                            ++ANAEAQKNIKRYQQQLKDVQTALEEEQRARD+ARE LGI ER
Sbjct: 811  ----------------NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDEARELLGISER 854

Query: 370  RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
            RANALQNELEESR LLEQADRGRRQAE ELAD HEQLNELSAQ  SIS AKRKLE ELQT
Sbjct: 855  RANALQNELEESRTLLEQADRGRRQAEQELADCHEQLNELSAQNASISGAKRKLEAELQT 914

Query: 430  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
            LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ+R
Sbjct: 915  LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVR 974

Query: 490  LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
            LDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERRIKELSFQA+E
Sbjct: 975  LDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKELSFQADE 1034

Query: 550  DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
            DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 1035 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 1094

Query: 610  VSKIRTK--GGSVARGSSPL 627
            ++K RTK  GGS ARG SP+
Sbjct: 1095 ITKFRTKGRGGSSARGLSPV 1114

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|234204034|gb|ACQ91271.1| myosin heavy chain variant C [Bombyx mandarina]

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 380/619 (61%), Positives = 438/619 (70%), Gaps = 79/619 (12%)

Query: 14  KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 73
           KRKLQARLAEAEETIESLNQKV+ALEKTKQRLATEVEDLQLE                  
Sbjct: 365 KRKLQARLAEAEETIESLNQKVVALEKTKQRLATEVEDLQLE------------------ 406

Query: 74  DKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                           VDRA AIANAAEKK KA DKIIGEWKLK     ++ L   L   
Sbjct: 407 ----------------VDRATAIANAAEKKQKAFDKIIGEWKLK-----VDDLAAELDAS 445

Query: 134 FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
              +K  ++     F   +L+    E +E +E       A+ +  + LA EV+DL  ++ 
Sbjct: 446 ---QKECRNYSTELF---RLKGAYEEGQEQLE-------AVRRENKNLADEVKDLLDQIG 492

Query: 194 RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE---- 249
                 +  EK  K ++    E +  +++  A L+  + +      EL +++   +    
Sbjct: 493 EGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQ 552

Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
           E +E+ E  R+ ++   D ++  L+   +G     E  + +K+LE + +EL+ AL+ A  
Sbjct: 553 EKEEEFENTRKNHQRALDSMQASLEAEAKGK---AEALRMKKKLEADINELEIALDHA-- 607

Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
                           ++ANAEAQKNIKRYQ Q+KD+QTALEEEQRARDDAREQLGI ER
Sbjct: 608 ----------------NKANAEAQKNIKRYQAQIKDLQTALEEEQRARDDAREQLGISER 651

Query: 370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQT 429
           RANALQNELEESR LLEQADR RRQAE  L+DAHEQLNELSAQ+ S+SAAKRKLE ELQT
Sbjct: 652 RANALQNELEESRTLLEQADRARRQAEQGLSDAHEQLNELSAQSASLSAAKRKLESELQT 711

Query: 430 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIR 489
           LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE QIKELQ+R
Sbjct: 712 LHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVR 771

Query: 490 LDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
           LDEAE NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK+ERRIKEL+FQA+E
Sbjct: 772 LDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKELTFQADE 831

Query: 550 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
           DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA
Sbjct: 832 DRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 891

Query: 610 VSKIRTKG--GSVARGSSP 626
           +SK R KG  GS ARG SP
Sbjct: 892 ISKFRGKGRAGSAARGVSP 910

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
FB|FBgn0264695	1962	Mhc "Myosin heavy chain" [Dros	0.553	0.203	0.602	1.4e-128
WB|WBGene00006789	1966	unc-54 [Caenorhabditis elegans	0.545	0.199	0.412	2.8e-76
UNIPROTKB|Q90WH5	891	LOC429272 "Atrial myosin heacy	0.650	0.526	0.336	6.7e-75
UNIPROTKB|F1NPC8	767	LOC429272 "Uncharacterized pro	0.650	0.611	0.336	6.7e-75
ZFIN|ZDB-GENE-060531-50	1933	myha "myosin, heavy chain a" [	0.642	0.239	0.338	1.3e-73
ZFIN|ZDB-GENE-070705-73	1937	myhz1.2 "myosin, heavy polypep	0.654	0.243	0.330	2.2e-73
ZFIN|ZDB-GENE-070705-74	1937	myhz1.3 "myosin, heavy polypep	0.654	0.243	0.330	2.8e-73
ZFIN|ZDB-GENE-030131-5336	1936	wu:fd14a01 "wu:fd14a01" [Danio	0.644	0.240	0.331	9.6e-73
ZFIN|ZDB-GENE-020604-1	1935	myhz2 "myosin, heavy polypepti	0.642	0.239	0.336	9.6e-73
UNIPROTKB|K7GMH0	1130	K7GMH0 "Uncharacterized protei	0.647	0.413	0.341	1.9e-72

FB|FBgn0264695 Mhc "Myosin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 1074 (383.1 bits), Expect = 1.4e-128, Sum P(2) = 1.4e-128
 Identities = 253/420 (60%), Positives = 276/420 (65%)

Query:   231 QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIG-EGGRNIHEVEK- 288
             +K  +    E   L+ A EEA+  LE  + ENK L  +++  L Q+  E  R I E E+ 
Sbjct:  1526 EKARKRLEAEKDELQAALEEAEAALE--QEENKVLRAQLE--LSQVRQEIDRRIQEKEEE 1581

Query:   289 ---ARKRLEVEKDXXXXXXXXXXXXXXXXXN--KVLRA---QLELS-----QANAEAQKN 335
                 RK  +   D                    K L A   +LE++     +ANAEAQKN
Sbjct:  1582 FENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKANAEAQKN 1641

Query:   336 IKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANALQNELEESRQLLEQADRGRRQA 395
             IKRYQQQLKD+QTAL             LGI ERRANALQNELEESR LLEQADRGRRQA
Sbjct:  1642 IKRYQQQLKDIQTALEEEQRARDDAREQLGISERRANALQNELEESRTLLEQADRGRRQA 1701

Query:   396 ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLXXXXXXXXXXXXXMVDA 455
             E ELADAHEQLNE+SAQ  SISAAKRKLE ELQTLHSDLDELL             MVDA
Sbjct:  1702 EQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELLNEAKNSEEKAKKAMVDA 1761

Query:   456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVREL 515
             ARLADELRAEQDHAQTQEKLRKALE QIKELQ+RLDEAE NALKGGKKAIQKLEQRVREL
Sbjct:  1762 ARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVREL 1821

Query:   516 ENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQX 575
             ENELDGEQRRHADAQKNLRK+ERR+KELSFQ+EEDRKNHERMQDLVDKLQQKIKTYKRQ 
Sbjct:  1822 ENELDGEQRRHADAQKNLRKSERRVKELSFQSEEDRKNHERMQDLVDKLQQKIKTYKRQI 1881

Query:   576 XXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIRTKG--GSVARGSSPLKLVCSV 633
                         KFRK                  +SK R KG  GSV RG+SP     SV
Sbjct:  1882 EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAISKFRAKGRAGSVGRGASPAPRATSV 1941

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005859 "muscle myosin complex" evidence=ISS;IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0016459 "myosin complex" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0030239 "myofibril assembly" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0042692 "muscle cell differentiation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0060361 "flight" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0031033 "myosin filament organization" evidence=IMP

WB|WBGene00006789 unc-54 [Caenorhabditis elegans (taxid:6239)]

 Score = 706 (253.6 bits), Expect = 2.8e-76, Sum P(2) = 2.8e-76
 Identities = 168/407 (41%), Positives = 227/407 (55%)

Query:   231 QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG-GRNIHEVEKA 289
             QK  R    E   L+ A +EA+  LEA   +      EV  +  +I +       E E  
Sbjct:  1539 QKIIRRLEIEKEELQHALDEAEAALEAEESKVLRAQVEVSQIRSEIEKRIQEKEEEFENT 1598

Query:   290 RKR--LEVEKDXXXXXXXXXXXXXXXXXNKVLRA---QLELS-----QANAEAQKNIKRY 339
             RK     +E                    K L     +LE++     +ANA+AQKN+KRY
Sbjct:  1599 RKNHARALESMQASLETEAKGKAELLRIKKKLEGDINELEIALDHANKANADAQKNLKRY 1658

Query:   340 QQQLKDVQTALXXXXXXXXXXXXXLGIVERRANALQNELEESRQLLEQADRGRRQAETEL 399
             Q+Q++++Q  +                 E+RA  LQ+E EE     E A+R R+QAE E 
Sbjct:  1659 QEQVRELQLQVEEEQRNGADTREQFFNAEKRATLLQSEKEELLVANEAAERARKQAEYEA 1718

Query:   400 ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLXXXXXXXXXXXXXMVDAARLA 459
             ADA +Q NE +AQ +S+++AKRKLEGE+Q +H+DLDE L             + DA RLA
Sbjct:  1719 ADARDQANEANAQVSSLTSAKRKLEGEIQAIHADLDETLNEYKAAEERSKKAIADATRLA 1778

Query:   460 DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENEL 519
             +ELR EQ+H+Q  ++LRK LE Q+KE+Q+RLDEAE  ALKGGKK I KLEQRVRELE+EL
Sbjct:  1779 EELRQEQEHSQHVDRLRKGLEQQLKEIQVRLDEAEAAALKGGKKVIAKLEQRVRELESEL 1838

Query:   520 DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQXXXXX 579
             DGEQRR  DA KNL + +RR++EL FQ +ED+KN ER+QDL+DKLQQK+KT K+Q     
Sbjct:  1839 DGEQRRFQDANKNLGRADRRVRELQFQVDEDKKNFERLQDLIDKLQQKLKTQKKQVEEAE 1898

Query:   580 XXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIRTKG---GSVARG 623
                     K+++                  +SK+R+K     SVA G
Sbjct:  1899 ELANLNLQKYKQLTHQLEDAEERADQAENSLSKMRSKSRASASVAPG 1945

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0006936 "muscle contraction" evidence=IMP

GO:0048017 "inositol lipid-mediated signaling" evidence=IPI

GO:0043050 "pharyngeal pumping" evidence=IPI

GO:0018991 "oviposition" evidence=IMP

GO:0005859 "muscle myosin complex" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

UNIPROTKB|Q90WH5 LOC429272 "Atrial myosin heacy chain" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 163/484 (33%), Positives = 244/484 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     L+E ++  E    ++ A +K  + L+TE+  L+   +                
Sbjct:   401 QRNFDKILSEWKQKFEESQTELEASQKEARSLSTELFKLKNAYEESLEHLETFKRENKNL 460

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA--- 266
                  +   ++      +   +K  +    E   L+ A EEA+  LE    E K L    
Sbjct:   461 QEEILDLTEQLGASQKSIHELEKVRKQLDAEKLELQAALEEAEASLE--HEEGKILRAQL 518

Query:   267 --DEVK-DLLDQIGEGGRNIHEVEKARKR----LEVEKDXXXXXXXXXXXXXXXXXNKVL 319
               ++VK D   ++ E    I + ++   R    L+   D                   + 
Sbjct:   519 EFNQVKADYERKLAEKDEEIEQSKRNHLRVVDSLQTSLDAETRSRNEALRLKKKMEGDLN 578

Query:   320 RAQLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANALQN 376
               +++LS AN   AEAQK +K  Q  LKD Q  L             + IVERR N LQ+
Sbjct:   579 EMEIQLSHANRTAAEAQKQVKALQGYLKDTQLQLDDVVRANEDLKENIAIVERRNNLLQS 638

Query:   377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
             ELEE R ++EQ++R R+ AE EL +A E++  L +Q TS+   K+K+E ++  L ++++E
Sbjct:   639 ELEELRAMVEQSERARKLAEQELIEASERVQLLHSQNTSLINQKKKMEADISQLQTEVEE 698

Query:   437 LLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
              +             + DAA +A+EL+ EQD +   E+++K +E  +K+LQ+RLDEAE  
Sbjct:   699 AIQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQL 758

Query:   497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHER 556
             ALKGGKK +QKLE RVRELENEL+ EQ+R+A++ K LRK+ERR+KELS+Q EEDRKN  R
Sbjct:   759 ALKGGKKQLQKLEVRVRELENELEAEQKRNAESIKGLRKSERRVKELSYQTEEDRKNMVR 818

Query:   557 MQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIRTK 616
             +QDLVDKLQ K+K YKRQ             KFRK                  V+K+R +
Sbjct:   819 LQDLVDKLQLKVKAYKRQAEEAEEQANSNLAKFRKVQHELDEAEERADMAESQVNKLRAR 878

Query:   617 GGSV 620
                +
Sbjct:   879 SRDI 882

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1NPC8 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 163/484 (33%), Positives = 244/484 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     L+E ++  E    ++ A +K  + L+TE+  L+   +                
Sbjct:   277 QRNFDKILSEWKQKFEESQTELEASQKEARSLSTELFKLKNAYEESLEHLETFKRENKNL 336

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA--- 266
                  +   ++      +   +K  +    E   L+ A EEA+  LE    E K L    
Sbjct:   337 QEEILDLTEQLGASQKSIHELEKVRKQLDAEKLELQAALEEAEASLE--HEEGKILRAQL 394

Query:   267 --DEVK-DLLDQIGEGGRNIHEVEKARKR----LEVEKDXXXXXXXXXXXXXXXXXNKVL 319
               ++VK D   ++ E    I + ++   R    L+   D                   + 
Sbjct:   395 EFNQVKADYERKLAEKDEEIEQSKRNHLRVVDSLQTSLDAETRSRNEALRLKKKMEGDLN 454

Query:   320 RAQLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANALQN 376
               +++LS AN   AEAQK +K  Q  LKD Q  L             + IVERR N LQ+
Sbjct:   455 EMEIQLSHANRTAAEAQKQVKALQGYLKDTQLQLDDVVRANEDLKENIAIVERRNNLLQS 514

Query:   377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
             ELEE R ++EQ++R R+ AE EL +A E++  L +Q TS+   K+K+E ++  L ++++E
Sbjct:   515 ELEELRAMVEQSERARKLAEQELIEASERVQLLHSQNTSLINQKKKMEADISQLQTEVEE 574

Query:   437 LLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
              +             + DAA +A+EL+ EQD +   E+++K +E  +K+LQ+RLDEAE  
Sbjct:   575 AIQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQL 634

Query:   497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHER 556
             ALKGGKK +QKLE RVRELENEL+ EQ+R+A++ K LRK+ERR+KELS+Q EEDRKN  R
Sbjct:   635 ALKGGKKQLQKLEVRVRELENELEAEQKRNAESIKGLRKSERRVKELSYQTEEDRKNMVR 694

Query:   557 MQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIRTK 616
             +QDLVDKLQ K+K YKRQ             KFRK                  V+K+R +
Sbjct:   695 LQDLVDKLQLKVKAYKRQAEEAEEQANSNLAKFRKVQHELDEAEERADMAESQVNKLRAR 754

Query:   617 GGSV 620
                +
Sbjct:   755 SRDI 758

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

ZFIN|ZDB-GENE-060531-50 myha "myosin, heavy chain a" [Danio rerio (taxid:7955)]

 Score = 643 (231.4 bits), Expect = 1.3e-73, Sum P(2) = 1.3e-73
 Identities = 163/482 (33%), Positives = 245/482 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     LAE ++  E    ++   +K  + L+TE+  ++   +                
Sbjct:  1446 QRNFDKVLAEWKQKYEEGQAELEGAQKEARSLSTELFKMKNSYEETLDQLETLKRENKNL 1505

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
                  +   ++ +    +   +K  +   TE   ++ A EEA+  LE    E+K L  ++
Sbjct:  1506 QQEISDLTEQIGETGKSIHELEKAKKTVETEKAEIQTALEEAEGTLE--HEESKILRVQL 1563

Query:   270 KDLLDQI-GEGGRNIHEVEKARKRLEVEKDXXXXXXXXXXXXXXXXXNKVLRA------- 321
             +  L+Q+ GE  R + E ++  ++++                     N  LR        
Sbjct:  1564 E--LNQVKGEIDRKLAEKDEEIEQIKRNSQRVTEAMQSTLDSEVRSRNDALRIKKKMEGD 1621

Query:   322 ----QLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANAL 374
                 +++LS AN   AEAQK ++  Q QLKD Q  L             + +VERR   +
Sbjct:  1622 LNEMEIQLSHANRQAAEAQKQLRNVQSQLKDAQLHLDDAVRAQEDMKEQVAMVERRNTLM 1681

Query:   375 QNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
             Q+E+EE R  LEQ +RGR+ AE EL DA E++  L +Q TS+   K+KLE +L  + S++
Sbjct:  1682 QSEIEELRAALEQTERGRKVAEQELVDASERVGLLHSQNTSLLNTKKKLESDLVQIQSEV 1741

Query:   435 DELLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
             ++ +             + DAA +A+EL+ EQD +   E+++K LE  +K+LQ RLDEAE
Sbjct:  1742 EDTVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEITVKDLQHRLDEAE 1801

Query:   495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
             N A+KGGKK +QKLE RVRELE+E+D EQRR ADA K +RK ERR+KEL++Q EED+KN 
Sbjct:  1802 NLAMKGGKKQLQKLESRVRELESEIDAEQRRGADAVKGVRKYERRVKELTYQTEEDKKNI 1861

Query:   555 ERMQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIR 614
              R+QDLVDKLQ K+K YKRQ             K RK                  V+K+R
Sbjct:  1862 NRLQDLVDKLQLKVKAYKRQSEEAEEQANSHLSKLRKVQHELEEAEERADISESQVNKLR 1921

Query:   615 TK 616
              K
Sbjct:  1922 AK 1923

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

ZFIN|ZDB-GENE-070705-73 myhz1.2 "myosin, heavy polypeptide 1.2, skeletal muscle" [Danio rerio (taxid:7955)]

 Score = 641 (230.7 bits), Expect = 2.2e-73, Sum P(2) = 2.2e-73
 Identities = 161/487 (33%), Positives = 245/487 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     LAE ++  E    ++   +K  + L+TE+  ++   +                
Sbjct:  1448 QRNFDKVLAEWKQKYEEGQAELEGAQKEARSLSTELFKMKNSYEETLDQLETLKRENKNL 1507

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA--- 266
                  +   ++ +    +   +K  +   TE   ++ A EEA+  LE    E+K L    
Sbjct:  1508 QQEISDLTEQIGETGKSIHELEKSKKAVETEKAEIQTALEEAEGTLE--HEESKILRVQL 1565

Query:   267 --DEVKDLLDQ-IGEGGRNIHEVEKARKRLEVEKDXXXXXXXXXXXXXXXXXNKVL---- 319
               ++VK  +D+ + E    I ++++  +R+                       K+     
Sbjct:  1566 ELNQVKSEIDRKLAEKDEEIEQIKRNSQRITDSMQSTLDSEVRSRNDALRIKKKMEGDLN 1625

Query:   320 RAQLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANALQN 376
               +++LS AN   AEAQK ++  Q QLKD Q  L             + +VERR   +Q+
Sbjct:  1626 EMEIQLSHANRQAAEAQKQLRNVQAQLKDAQLHLDDAVRGQEDMKEQVAMVERRNTLMQS 1685

Query:   377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
             E+EE R  LEQ +RGR+ AE EL DA E++  L +Q TS+   K+KLE +L  + S++++
Sbjct:  1686 EIEELRAALEQTERGRKVAEQELVDASERVGLLHSQNTSLLNTKKKLEADLVQIQSEVED 1745

Query:   437 LLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
              +             + DAA +A+EL+ EQD +   E+++K LE  +K+LQ RLDEAEN 
Sbjct:  1746 TVQEARNAEDKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEVTVKDLQHRLDEAENL 1805

Query:   497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHER 556
             A+KGGKK +QKLE RVRELE+E++ EQRR ADA K +RK ERR+KEL++Q EED+KN  R
Sbjct:  1806 AMKGGKKQLQKLESRVRELESEVEAEQRRGADAVKGVRKYERRVKELTYQTEEDKKNVNR 1865

Query:   557 MQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIRTK 616
             +QDLVDKLQ K+K YKRQ             K RK                  V+K+R K
Sbjct:  1866 LQDLVDKLQLKVKAYKRQSEEAEEQANSHLSKLRKVQHELEEAEERADIAESQVNKLRAK 1925

Query:   617 GGSVARG 623
                  +G
Sbjct:  1926 SRDSGKG 1932

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

ZFIN|ZDB-GENE-070705-74 myhz1.3 "myosin, heavy polypeptide 1.3, skeletal muscle" [Danio rerio (taxid:7955)]

 Score = 640 (230.4 bits), Expect = 2.8e-73, Sum P(2) = 2.8e-73
 Identities = 161/487 (33%), Positives = 244/487 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     LAE ++  E    ++   +K  + L+TE+  ++   +                
Sbjct:  1448 QRNFDKVLAEWKQKYEEGQAELEGAQKEARSLSTELFKMKNSYEETLDQLETLKRENKNL 1507

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA--- 266
                  +   ++ +    +   +K  +   TE   ++ A EEA+  LE    E+K L    
Sbjct:  1508 QQEISDLTEQLGETGKSIHELEKSKKAVETEKAEIQTALEEAEGTLE--HEESKILRVQL 1565

Query:   267 --DEVKDLLDQ-IGEGGRNIHEVEKARKRLEVEKDXXXXXXXXXXXXXXXXXNKVL---- 319
               ++VK  +D+ + E    I ++++  +R+                       K+     
Sbjct:  1566 ELNQVKSEIDRKLAEKDEEIEQIKRNSQRVTESMQSTLDSEVRSRNDALRIKKKMEGDLN 1625

Query:   320 RAQLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANALQN 376
               +++LS AN   AEAQK ++  Q QLKD Q  L             + +VERR   +Q+
Sbjct:  1626 EMEIQLSHANRQAAEAQKQLRNVQAQLKDAQLHLDDAVRGQEDMKEQVAMVERRNTLMQS 1685

Query:   377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
             E+EE R  LEQ +RGR+ AE EL DA E++  L +Q TS+   K+KLE +L  + S++++
Sbjct:  1686 EIEELRAALEQTERGRKVAEQELVDASERVGLLHSQNTSLLNTKKKLEADLVQIQSEVED 1745

Query:   437 LLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
              +             + DAA +A+EL+ EQD +   E+++K LE  +K+LQ RLDEAEN 
Sbjct:  1746 TVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEITVKDLQHRLDEAENL 1805

Query:   497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHER 556
             A+KGGKK +QKLE RVRELE E++ EQRR ADA K +RK ERR+KEL++Q EED+KN  R
Sbjct:  1806 AMKGGKKQLQKLESRVRELETEIEAEQRRGADAVKGVRKYERRVKELTYQTEEDKKNVNR 1865

Query:   557 MQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIRTK 616
             +QDLVDKLQ K+K YKRQ             K RK                  V+K+R K
Sbjct:  1866 LQDLVDKLQLKVKAYKRQSEEAEEQANSHLSKLRKVQHELEEAEERADIAESQVNKLRAK 1925

Query:   617 GGSVARG 623
                  +G
Sbjct:  1926 SRDAGKG 1932

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5336 wu:fd14a01 "wu:fd14a01" [Danio rerio (taxid:7955)]

 Score = 636 (228.9 bits), Expect = 9.6e-73, Sum P(2) = 9.6e-73
 Identities = 159/480 (33%), Positives = 244/480 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     LAE ++  E    ++   +K  + L+TE+  ++   +                
Sbjct:  1448 QRNFDKVLAEWKQKYEEGQAELEGAQKEARSLSTEIFKMKNSYEEALDQLETLKRENKNL 1507

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA--- 266
                  +   ++ +    +   +K  +   +E   ++ A EEA+  LE    E+K L    
Sbjct:  1508 QQEISDLTEQLGETGKSIHELEKAKKTVESEKVEIQTALEEAEGTLE--HEESKILRVQL 1565

Query:   267 --DEVKDLLDQ-IGEGGRNIHEVEKARKR----LEVEKDXXXXXXXXXXXXXXXXXNKVL 319
               ++VK  +D+ + E    I ++++  +R    ++   D                   + 
Sbjct:  1566 ELNQVKSEIDRKLAEKDEEIEQIKRNSQRVLDAMQSTLDSEVRSRNDALRVKKKMEGDLN 1625

Query:   320 RAQLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANALQN 376
               +++LS AN   AEAQK ++  Q QLKD Q  L             + +VERR N +Q 
Sbjct:  1626 EMEIQLSHANRQAAEAQKQLRNVQGQLKDAQLHLDEAVRGQEDMKEQVAMVERRNNLMQA 1685

Query:   377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
             E+EE R  LEQ +RGR+ AE EL DA E++  L +Q TS+   K+KLE +L  +  ++D+
Sbjct:  1686 EIEELRAALEQTERGRKVAEQELVDASERVGLLHSQNTSLINTKKKLEADLVQIQGEVDD 1745

Query:   437 LLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
              +             + DAA +A+EL+ EQD +   E+++K LE  +K+LQ RLDEAEN 
Sbjct:  1746 AVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEVTVKDLQHRLDEAENL 1805

Query:   497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHER 556
             A+KGGKK +QKLE RVRELE+E++ EQRR ADA K +RK ERR+KEL++Q EED+KN  R
Sbjct:  1806 AMKGGKKQLQKLESRVRELESEVEAEQRRGADAVKGVRKYERRVKELTYQTEEDKKNVTR 1865

Query:   557 MQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIRTK 616
             +QDLVDKLQ K+K YKRQ             ++RK                  V+K+R K
Sbjct:  1866 LQDLVDKLQLKVKAYKRQAEEAEEQANTHLSRYRKVQHEMEEAQERADIAESQVNKLRAK 1925

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-020604-1 myhz2 "myosin, heavy polypeptide 2, fast muscle specific" [Danio rerio (taxid:7955)]

 Score = 635 (228.6 bits), Expect = 9.6e-73, Sum P(2) = 9.6e-73
 Identities = 162/482 (33%), Positives = 245/482 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     LAE ++  E    ++   +K  + L+TE+  ++   +                
Sbjct:  1448 QRNFDKVLAEWKQKYEEGQAELEGAQKEARSLSTELFKMKNSYEETLDQLETLKRENKNL 1507

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
                  +   ++ +    +   +K  +   TE   ++ A EEA+  LE    E+K L  ++
Sbjct:  1508 QQEISDLTEQLGETGKSIHELEKAKKTVETEKAEIQTALEEAEGTLE--HEESKILRVQL 1565

Query:   270 KDLLDQI-GEGGRNIHEVEKARKRLEVEKDXXXXXXXXXXXXXXXXXNKVLRA------- 321
             +  L+Q+ GE  R + E ++  ++++                     N  LR        
Sbjct:  1566 E--LNQVKGEIDRKLAEKDEEMEQIKRNSQRVTEAMQSTLDSEVRSRNDALRIKKKMEGD 1623

Query:   322 ----QLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANAL 374
                 +++LS AN   AEAQK ++  Q QLKD Q  L             + +VERR   +
Sbjct:  1624 LNEMEIQLSHANRQAAEAQKQLRNVQAQLKDAQLHLDDAVRGQEDMKEQVAMVERRNTLM 1683

Query:   375 QNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
             Q+E+EE R  LEQ +RGR+ AE EL DA E++  L +Q TS+   K+KLE +L  + S++
Sbjct:  1684 QSEIEELRAALEQTERGRKVAEQELVDASERVGLLHSQNTSLLNTKKKLETDLVQIQSEV 1743

Query:   435 DELLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
             ++ +             + DAA +A+EL+ EQD +   E+++K LE  +K+LQ RLDEAE
Sbjct:  1744 EDTVQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEVTVKDLQHRLDEAE 1803

Query:   495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
             N A+KGGKK +QKLE RVRELE+E++ EQRR ADA K +RK ERR+KEL++Q EED+KN 
Sbjct:  1804 NLAMKGGKKQLQKLESRVRELESEVEAEQRRGADAVKGVRKYERRVKELTYQTEEDKKNV 1863

Query:   555 ERMQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIR 614
              R+QDLVDKLQ K+K YKRQ             K RK                  V+K+R
Sbjct:  1864 NRLQDLVDKLQLKVKAYKRQSEEAEEQANSHLSKLRKVQHELEEAEERADIAESQVNKLR 1923

Query:   615 TK 616
              K
Sbjct:  1924 AK 1925

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006950 "response to stress" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|K7GMH0 K7GMH0 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 630 (226.8 bits), Expect = 1.9e-72, Sum P(2) = 1.9e-72
 Identities = 166/486 (34%), Positives = 243/486 (50%)

Query:   150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRXXXXXXXXXXXXXXX 209
             +R     LAE ++  E    ++ + +K  + L+TE+  L+   +                
Sbjct:   639 QRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNL 698

Query:   210 XXXXGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
                  +   ++      +   +K  +    E   L+ A EEA+  LE    E K L  ++
Sbjct:   699 QEEISDLTEQLGSSGKTIHELEKVRKQLEVEKLELQSALEEAEASLE--HEEGKILRAQL 756

Query:   270 KDLLDQI-GEGGRNI----HEVEKARKR-------LEVEKDXXXXXXXXXXXXXXXXXNK 317
             +   +QI  E  R +     E+E+A++        L+   D                   
Sbjct:   757 E--FNQIKAEIERKLVEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGD 814

Query:   318 VLRAQLELSQAN---AEAQKNIKRYQQQLKDVQTALXXXXXXXXXXXXXLGIVERRANAL 374
             +   +++LS AN   AEAQK +K  Q  LKD Q  L             + IVERR N L
Sbjct:   815 LNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLL 874

Query:   375 QNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
             Q ELEE R ++EQ +R R+ AE EL +  E++  L +Q TS+   K+K+E +L  L S++
Sbjct:   875 QAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMESDLTQLQSEV 934

Query:   435 DELLXXXXXXXXXXXXXMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
             +E +             + DAA +A+EL+ EQD +   E+++K +E  IK+LQ RLDEAE
Sbjct:   935 EEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAE 994

Query:   495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
               ALKGGKK +QKLE RVRELENEL+ EQ+R+A++ K +RK+ERRIKEL++Q EEDRKN 
Sbjct:   995 QIALKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNL 1054

Query:   555 ERMQDLVDKLQQKIKTYKRQXXXXXXXXXXXXXKFRKXXXXXXXXXXXXXXXXXXVSKIR 614
              R+QDLVDKLQ K+K YKRQ             KFRK                  V+K+R
Sbjct:  1055 LRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQVNKLR 1114

Query:   615 TKGGSV 620
              K   +
Sbjct:  1115 AKSRDI 1120

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05661	MYSA_DROME	No assigned EC number	0.7700	0.5048	0.1855	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	721
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	1e-124
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	1e-31
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	6e-22
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	3e-17
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-16
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-15
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-14
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-14
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	4e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-12
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	5e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-11
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-11
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-09
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-08
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-07
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	3e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-07
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	2e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	1e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-05
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	1e-05
TIGR03007	498	TIGR03007, pepcterm_ChnLen, polysaccharide chain l	2e-05
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-05
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	9e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-04
PRK10929	1109	PRK10929, PRK10929, putative mechanosensitive chan	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	2e-04
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	3e-04
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	4e-04
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	4e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	4e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
pfam13514	1118	pfam13514, AAA_27, AAA domain	6e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	7e-04
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	7e-04
COG1566	352	COG1566, EmrA, Multidrug resistance efflux pump [D	8e-04
TIGR00606	1311	TIGR00606, rad50, rad50	0.001
pfam04111	356	pfam04111, APG6, Autophagy protein Apg6	0.001
pfam05622	713	pfam05622, HOOK, HOOK protein	0.001
pfam05622	713	pfam05622, HOOK, HOOK protein	0.001
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	0.001
PRK10246	1047	PRK10246, PRK10246, exonuclease subunit SbcC; Prov	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
COG4026	290	COG4026, COG4026, Uncharacterized protein containi	0.002
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	0.002
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.003
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.003
PRK03598	331	PRK03598, PRK03598, putative efflux pump membrane	0.003
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.003
PLN03223	1634	PLN03223, PLN03223, Polycystin cation channel prot	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.004
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	0.004
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.004
TIGR03794	421	TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin syste	0.004

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score =  390 bits (1004), Expect = e-124
 Identities = 286/537 (53%), Positives = 367/537 (68%), Gaps = 67/537 (12%)

Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
           ++KL  +++E EE  E+ N K  +LEKTK RL +E+EDLQ+E++RANA A+  EKK K  
Sbjct: 323 KKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNF 382

Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
           DKI+ EWK KVD+L AELD +Q+E RN STELFRLK   EE ++Q+EA+RRENKNL DE+
Sbjct: 383 DKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEI 442

Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
            DL DQ+GEGGRN+HE+EKAR+RLE EKDELQAALEEAEAALE EE+KVLRAQ+ELSQ  
Sbjct: 443 HDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIR 502

Query: 330 AEAQKNI-----------KRYQQQLKDVQTALEEEQRARDDA------------------ 360
           +E ++ +           K +Q+ ++ +Q  LE E + + +A                  
Sbjct: 503 SEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIAL 562

Query: 361 -----------------REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD-- 401
                            ++Q+  ++ +    Q   E++R+ L  A+R     E EL +  
Sbjct: 563 DHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELR 622

Query: 402 ------------AHEQLNELSAQATSISA-------AKRKLEGELQTLHSDLDELLNEAK 442
                       A  +L E S +   ++A        KRKLEGEL  L SDLDE +NE K
Sbjct: 623 SALEQAERARKQAETELAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELK 682

Query: 443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK 502
            +EE+AKKA  DAARLA+ELR EQ+H+Q  E+LRK LE+Q+KELQ+RLDEAE  ALKGGK
Sbjct: 683 AAEERAKKAQADAARLAEELRQEQEHSQHLERLRKQLESQVKELQVRLDEAEAAALKGGK 742

Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
           K IQKLE RVRELE ELDGEQRRHA+ QKNLRK ERR+KEL FQ EED+KN ER+QDLVD
Sbjct: 743 KMIQKLEARVRELEAELDGEQRRHAETQKNLRKMERRVKELQFQVEEDKKNLERLQDLVD 802

Query: 563 KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGS 619
           KLQ KIKTYKRQ+EEAEE+A +NL+K+RKAQ+ELE+AEERAD AE++++K+R K   
Sbjct: 803 KLQAKIKTYKRQLEEAEEVAQINLSKYRKAQRELEDAEERADTAERSLNKLRAKSRR 859

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score =  132 bits (333), Expect = 1e-31
 Identities = 170/587 (28%), Positives = 282/587 (48%), Gaps = 48/587 (8%)

Query: 150 RRKLQARLAEAEETIESLNQK-------VIALEKTKQRLATEVEDLQLEVDRANAIANAA 202
           +R+L+ +L   E  +  L+ K       V  L+K  + L   + +L+ E++   A    A
Sbjct: 6   KRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKA 65

Query: 203 EKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE- 261
           EK    + + + E   ++++      A  +  +    EL +L+   EEA  Q E      
Sbjct: 66  EKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEEALATL 125

Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRA 321
            K   D + +L +QI +  +   + EK + +L+ E D+L A L++   A    E K  + 
Sbjct: 126 RKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQL 185

Query: 322 QLELSQANA---EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNEL 378
           + +LS+      E Q+ +     Q   +Q+   +  R  ++A  Q+  + +  + L+++L
Sbjct: 186 ESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQL 245

Query: 379 EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD--- 435
           EE+++ LE+  R R   + +L      L+ L  Q    S AK +LE +L   ++++    
Sbjct: 246 EEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWR 305

Query: 436 -----ELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL 490
                E    A+  EE  KK     + L +   A      + EK +  L++++++LQI L
Sbjct: 306 SKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIEL 365

Query: 491 DEAENNAL------KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELS 544
           + A   A       K   K + + +++V EL+ ELD  QR   +    L + +  ++EL 
Sbjct: 366 ERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELK 425

Query: 545 FQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
            Q E  R+ ++ +QD +  L  ++    R + E E+      A+  + Q  LEEAE   +
Sbjct: 426 DQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALE 485

Query: 605 LAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKN 664
           L E  V + + +                         QI S++   L   EEEFENTRKN
Sbjct: 486 LEESKVLRAQVE-----------------------LSQIRSEIERRLAEKEEEFENTRKN 522

Query: 665 HQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVR 711
           HQRA++S+QA+LEAEAKGKAEA R+KKKLE DINELEIALDHANK  
Sbjct: 523 HQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKAN 569

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score =  100 bits (252), Expect = 6e-22
 Identities = 146/580 (25%), Positives = 259/580 (44%), Gaps = 25/580 (4%)

Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
            ++L+++L+E +  ++ L +++  L   K RL +E  DL  +++ A A  +   K    +
Sbjct: 182 AKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKSQL 241

Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
           +  + E K  +++ + E    Q + R    +L  L+   EE  E    + R+      E+
Sbjct: 242 ESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEI 301

Query: 270 KDLLDQIGEGGRNIH-EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL--- 325
           +    +    G     E+E+ +K+L  +  EL+ A E A A  +  E    R Q EL   
Sbjct: 302 QQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDL 361

Query: 326 -------SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNEL 378
                  + A +E +K  K + + L + +  ++E Q   D A+ +   +      L+NEL
Sbjct: 362 QIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNEL 421

Query: 379 EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438
           EE +  +E   R  +  + E+ D  +QL E       +  A+R+LE E   L + L+E  
Sbjct: 422 EELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAE 481

Query: 439 NEAKNSEEKAKKAMVDAARLADEL-RAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA 497
              +  E K  +A V+ +++  E+ R   +  +  E  RK  +  I+ LQ  L EAE   
Sbjct: 482 AALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATL-EAEAKG 540

Query: 498 LKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERM 557
                +  +KLE  + ELE  LD   + +A+AQKN++K ++++KEL  Q EE+++  E  
Sbjct: 541 KAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQRAREDA 600

Query: 558 QDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEER-ADLAEQAVSKIRTK 616
           ++ +   +++    + ++EE            ++A+ EL EA ER  +L  Q  S I  K
Sbjct: 601 REQLAVAERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSSLIAQK 660

Query: 617 GGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEF----------ENTRKNHQ 666
                  ++    +       +   +   K       L EE           E  RK  +
Sbjct: 661 RKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLERLRKQLE 720

Query: 667 RALDSMQASL-EAEAKGKAEALRMKKKLEADINELEIALD 705
             +  +Q  L EAEA       +M +KLEA + ELE  LD
Sbjct: 721 SQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAELD 760

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 85.9 bits (213), Expect = 3e-17
 Identities = 150/651 (23%), Positives = 275/651 (42%), Gaps = 80/651 (12%)

Query: 14  KRKLQARLAEAEETIESLNQK-------VIALEKTKQRLATEVEDLQLEVDRANAIANAA 66
           KR+L+ +L   E  +  L+ K       V  L+K  + L   + +L+ E++   A    A
Sbjct: 6   KRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKA 65

Query: 67  EKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEW-KLKGSLDFINT 125
           EK             L   L+   +R      A   + +   K   E  KL+  L+    
Sbjct: 66  EKARA---------DLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLE---- 112

Query: 126 LYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEV 185
                      E +L+H   L   R+K Q  + E  E IE L ++    EK K +L  EV
Sbjct: 113 -----------EANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEV 161

Query: 186 EDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK 245
           +DL  ++D+       AEKKAK ++  + E ++K+D+L  +L+    +     +E   L 
Sbjct: 162 DDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLT 221

Query: 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALE 305
              EEA+ Q+  + +    L  ++++    + E  R    ++   ++LE + D L+  LE
Sbjct: 222 RQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLE 281

Query: 306 EAEAALEQEENKVLRAQLELSQANA-----------EAQKNIKRYQQQLKDVQTALEEEQ 354
           E   A  + E ++ +A  E+ Q  +           E ++  K+  Q++ +++ A E   
Sbjct: 282 EESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAAN 341

Query: 355 RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT 414
              D   +    ++     LQ ELE +     + ++ ++  +  LA+   +++EL A+  
Sbjct: 342 AKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELD 401

Query: 415 SISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEK 474
           +     R L  EL  L ++L+EL ++ +    + K    +   L D+L     +    EK
Sbjct: 402 TAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEK 461

Query: 475 LRKALETQIKELQIRLDEAENNALKGGKKAIQKLE------------------------- 509
            R+ LE +  ELQ  L+EAE  AL+  +  + + +                         
Sbjct: 462 ARRRLEAEKDELQAALEEAE-AALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTR 520

Query: 510 ----QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ-------AEEDRKNHERMQ 558
               + +  L+  L+ E +  A+A +  +K E  I EL            E +KN ++ Q
Sbjct: 521 KNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQ 580

Query: 559 DLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
             V +LQ +++  +R  E+A E  A+   +    + ELEE     + AE+A
Sbjct: 581 QQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERA 631

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 82.1 bits (203), Expect = 6e-16
 Identities = 81/350 (23%), Positives = 181/350 (51%), Gaps = 4/350 (1%)

Query: 224  AAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNI 283
                 A ++E +    EL  L+   E+ +E+L++++ E ++L D +++L  Q+ E  R +
Sbjct: 659  KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 284  HEVEKARKRLEVEKDELQA---ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ 340
             E+++    LE E ++LQ+    LEE    LE+E  ++     EL +     ++ + + +
Sbjct: 719  EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 341  QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELA 400
            +++++++   +  Q   ++  E+L   ERR +AL+ ELE   Q  E+ ++   + E E+ 
Sbjct: 779  EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 401  DAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLAD 460
            +  E+L+EL  +   +     +L+ EL+ L ++ +EL +E K  EE+ ++   +   L  
Sbjct: 839  ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 461  ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK-KAIQKLEQRVRELENEL 519
            EL   ++  +   +  + LE +++ L++ L E E    +  +     +LE+ +  LE E+
Sbjct: 899  ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958

Query: 520  DGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
            +     +  A +   + E R +EL  Q E+  +  E++ +++++L ++ +
Sbjct: 959  EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 79.3 bits (196), Expect = 4e-15
 Identities = 84/372 (22%), Positives = 164/372 (44%), Gaps = 46/372 (12%)

Query: 231  QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR 290
            ++E      ++  L+    E ++ L  +R+E + L +E++ L  ++ E  R I  + K  
Sbjct: 676  RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 291  KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
             RLE E ++L+  + +    L + E ++   +  L +A  E    +   + ++++++  +
Sbjct: 736  ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE----LAEAEAEIEELEAQI 791

Query: 351  EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
            E+ +      RE L  +      L  E    R+ LE  +R     E  L D  EQ+ ELS
Sbjct: 792  EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

Query: 411  AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
                S++A   +LE  ++ L S+L+ LLNE  + EE       +   L++ELR  +    
Sbjct: 852  EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911

Query: 471  TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ 530
               +  + L  ++ +L++RL+  E          I  L++R+ E                
Sbjct: 912  ELRRELEELREKLAQLELRLEGLEVR--------IDNLQERLSE---------------- 947

Query: 531  KNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFR 590
                       E S   EE      +++D  ++ ++++K  + +I   +E+  +NLA   
Sbjct: 948  -----------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKI---KELGPVNLA--- 990

Query: 591  KAQQELEEAEER 602
             A +E EE +ER
Sbjct: 991  -AIEEYEELKER 1001

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 77.8 bits (192), Expect = 1e-14
 Identities = 67/333 (20%), Positives = 143/333 (42%), Gaps = 20/333 (6%)

Query: 282 NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQ 341
           +I E  +  + LE + +EL+  + E E AL +   ++   + EL Q   E ++  ++   
Sbjct: 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 342 QLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD 401
             KD+     E ++  +   +      +    L+ E+EE  + LE+A+    +AE E+ +
Sbjct: 731 LRKDLARLEAEVEQLEERIAQL----SKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786

Query: 402 AHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE 461
              Q+ +L  +  ++  A  +L  EL  L+ +   L    ++ E +          L ++
Sbjct: 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846

Query: 462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDG 521
           +    +  ++     + LE  I+EL+  L+   N            LE+ +  L +EL+ 
Sbjct: 847 IEELSEDIESLAAEIEELEELIEELESELEALLN--------ERASLEEALALLRSELE- 897

Query: 522 EQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEI 581
                 +  + LR+ E +  EL  + EE R+   +++  ++ L+ +I   + ++ E   +
Sbjct: 898 ------ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951

Query: 582 AA-LNLAKFRKAQQELEEAEERADLAEQAVSKI 613
                 A   K + + EEA  R    E  + ++
Sbjct: 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 77.8 bits (192), Expect = 1e-14
 Identities = 61/304 (20%), Positives = 128/304 (42%), Gaps = 11/304 (3%)

Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
            +L+ ++ E EE I  L + +  L K  + L  E+E L+ E++  +   +A  K    ++
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEA-------QEQLEAVRRENK 263
             + + + ++  L+ EL   + E       L   +    EA       + Q+E ++ E K
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL 323
            L + + +L  ++         + +  + LE      +  LE+ E  +E+    +     
Sbjct: 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859

Query: 324 ELSQAN---AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE 380
           E+ +      E +  ++    +   ++ AL   +   ++  E+L  +E + + L+ ELEE
Sbjct: 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919

Query: 381 SRQLLEQADRGRRQAETELADAHEQLNEL-SAQATSISAAKRKLEGELQTLHSDLDELLN 439
            R+ L Q +      E  + +  E+L+E  S       A + K+E + +     L  L N
Sbjct: 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979

Query: 440 EAKN 443
           + K 
Sbjct: 980 KIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 72.8 bits (179), Expect = 4e-13
 Identities = 131/580 (22%), Positives = 248/580 (42%), Gaps = 55/580 (9%)

Query: 135 LNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 194
           L E +L+H   L   R+K Q  + E  E IE L ++    EK K +L  EV+DL  ++D+
Sbjct: 111 LEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQ 170

Query: 195 ANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ 254
                  AEKKAK ++  + E ++K+D+L  +L+    +     +E   L    EEA+ Q
Sbjct: 171 IAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQ 230

Query: 255 LEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQE 314
           +  + +    L  ++++    + E  R    ++   ++LE + D L+  LEE   A  + 
Sbjct: 231 VSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAEL 290

Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
           E +       LS+ANAE Q+   +++ +       LEE ++           + ++ + L
Sbjct: 291 ERQ-------LSKANAEIQQWRSKFESEGALRAEELEELKKK----------LNQKISEL 333

Query: 375 QNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
           +   E +    +  ++ + + ++EL D   +L   +A A+ +   ++  +  L      +
Sbjct: 334 EEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKV 393

Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
           DEL  E   ++ +A+    +  RL +EL   +D  +   +  K L+ +I +L  +L E  
Sbjct: 394 DELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGE-- 451

Query: 495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
                 G + + +LE+  R LE E D  Q    +A+  L   E ++              
Sbjct: 452 ------GGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKV-------------- 491

Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
            R Q  + +++ +I+    + EE  E    N  +  ++ Q   EAE +       + K  
Sbjct: 492 LRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQATLEAEAKGKAEASRLKK-- 549

Query: 615 TKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQA 674
                        KL   +    +I +   +K         ++++   K  Q  ++  Q 
Sbjct: 550 -------------KLEGDINEL-EIALDHANKANAEAQKNVKKYQQQVKELQTQVEEEQR 595

Query: 675 SLEAEAKGKAEALRMKKKLEADINELEIALDHANKVRVAA 714
           + E   +  A A R    LEA++ EL  AL+ A + R  A
Sbjct: 596 AREDAREQLAVAERRATALEAELEELRSALEQAERARKQA 635

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 69.3 bits (170), Expect = 5e-12
 Identities = 116/646 (17%), Positives = 246/646 (38%), Gaps = 81/646 (12%)

Query: 6   DQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANA 65
                     +L   LAE EE +E               L  E+E L+ E++   A    
Sbjct: 324 QLEELESKLDELAEELAELEEKLEE--------------LKEELESLEAELEELEAELEE 369

Query: 66  AEKKAKAIDKIIGEWKLKV-SLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFIN 124
            E + + +++ +   + KV  L+L++   N      E + + ++      +         
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ--------- 420

Query: 125 TLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATE 184
                       E             ++LQA L E EE +E L +++  LE+  + L  E
Sbjct: 421 -----------QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469

Query: 185 VEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYST--ELF 242
           +E+ +  +D A       + +  +++++    +   + + A L              EL 
Sbjct: 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI 529

Query: 243 RLKGAYEEA-----QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK 297
            +   YE A       +L+AV  EN N A +    L Q   G      ++  +       
Sbjct: 530 SVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT----- 584

Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL---KDVQTALEEEQ 354
                 ++  +  + +     L    +L + + + +K +      +    D+  AL  E 
Sbjct: 585 -----EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNAL--EL 637

Query: 355 RARDDAREQL----------------GIVERRANAL--QNELEESRQLLEQADRGRRQAE 396
             +     ++                G  +  ++ L  + E+EE  + +E+ +    + E
Sbjct: 638 AKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697

Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
             LA+  ++L EL  +   +     +L  ++  L  DL  L  E +  EE+  +   +  
Sbjct: 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757

Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN------ALKGGKKAIQKLEQ 510
            L  E+   ++  +  E+     E +I+EL+ ++++ +        AL   +  +  L +
Sbjct: 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817

Query: 511 RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT 570
               L   L+  +RR A  ++ L   E +I+ELS   E      E +++L+++L+ +++ 
Sbjct: 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877

Query: 571 YKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
              +    EE  AL  ++  +  +EL E E +     + + ++R K
Sbjct: 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 69.6 bits (171), Expect = 5e-12
 Identities = 64/341 (18%), Positives = 132/341 (38%), Gaps = 39/341 (11%)

Query: 240 ELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR------KRL 293
           EL+  +      Q +L  + RE   L +   DL         +++ V+ A       +R 
Sbjct: 294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERY 353

Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEE 353
           + + +EL+  LEE    +E+ + +    +     A  E    +   + QL D Q AL+ +
Sbjct: 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE----VDELKSQLADYQQALDVQ 409

Query: 354 QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQA 413
           Q               RA   Q  +    Q LE+A +     +    +A + L E  A+ 
Sbjct: 410 Q--------------TRAIQYQQAV----QALERAKQLCGLPDLTADNAEDWLEEFQAKE 451

Query: 414 TSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQE 473
              +     LE +           L+ A+ +  + ++A     ++A E+   +     +E
Sbjct: 452 QEATEELLSLEQK-----------LSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARE 500

Query: 474 KLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNL 533
            LR+  E +    Q++      + L+   +  Q+ E+ + E    L        + ++  
Sbjct: 501 LLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQ 560

Query: 534 RKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 574
            + E R++ LS    E R+    ++  +++LQ +I+    +
Sbjct: 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601

Length = 1486

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 72/331 (21%), Positives = 148/331 (44%), Gaps = 37/331 (11%)

Query: 283 IHEVEKARKRLEVEKD------ELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNI 336
           + E+EK  ++LE + +      EL+A L E E AL   + K LR +LE      E ++ +
Sbjct: 195 LEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELE------ELEEEL 248

Query: 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAE 396
            R +++L+++Q  LEE ++  ++ + +L  +      LQ EL E ++ +E+ +       
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
             L +   +L EL  +   +      L+ EL+   + L+EL       EE  ++      
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE------ 362

Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELE 516
                        +    L + LE   + L+  L E E          + ++   + EL+
Sbjct: 363 -----------LEEKLSALLEELEELFEALREELAELE--------AELAEIRNELEELK 403

Query: 517 NELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE 576
            E++  + R     + L   +  +KEL  + EE +   E + + +++L+++++  + +++
Sbjct: 404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463

Query: 577 EAEEIAALNLAKFRKAQQELEEAEERADLAE 607
           E E   A    + ++ ++EL   E R D  E
Sbjct: 464 ELERELAELQEELQRLEKELSSLEARLDRLE 494

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 68.2 bits (166), Expect = 1e-11
 Identities = 94/464 (20%), Positives = 217/464 (46%), Gaps = 18/464 (3%)

Query: 159  EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL 218
            +A+E  ++  +K     K K   A + ++ + + + A   A+AA+KKA+   K     K 
Sbjct: 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350

Query: 219  KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR--ENKNLADEVKDLLDQI 276
            + +  A E +A++++      +    K   + A+++ E  ++  E K  A+E K   D++
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410

Query: 277  GEGGRNIHEVEKARKRLEVEK--DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK 334
             +      + ++A+K+ E +K  DE +   EEA+ A E ++      + E ++  AE  K
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470

Query: 335  NIKRYQQQLKDVQTA------LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
                 +++ ++ + A       EE ++  D+A++     ++   A + E  +     ++A
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530

Query: 389  DRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKA 448
            +  ++  E + A+  ++ +EL        A ++K   E +    D +  L +A+ +++  
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590

Query: 449  KKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKL 508
            +  + +  +L +E +  +      E+ +KA E +IK  +++  E E   ++  KK   + 
Sbjct: 1591 EARIEEVMKLYEEEKKMK-----AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645

Query: 509  EQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHE---RMQDLVDKLQ 565
            +++  EL+   +  + + A+  K   + +++ +E     E+++K  E   +  +   K +
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705

Query: 566  QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA 609
            +  K    + ++AEE+         KA++  +EAEE    AE+A
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 92/423 (21%), Positives = 190/423 (44%), Gaps = 24/423 (5%)

Query: 200 NAAEKKAKAIDKIIGEWKLKVDDLAAELDASQ---KECRNYSTELFRLKGAYEEAQEQLE 256
           N  E +   +D+ I  ++ + +      D +    +E      EL  L+   E+ +E + 
Sbjct: 209 NGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA 268

Query: 257 AVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEEN 316
              RE + LA+EV+DL +++ E      ++       + + + ++A  EE E   E+  +
Sbjct: 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328

Query: 317 KVLRAQLELSQANAEAQ---KNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANA 373
           ++   ++     N EA+   ++    +++ ++++    E +   ++ARE +         
Sbjct: 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEE 388

Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
           L+ E+EE R+    A      AE  L +  E+ +EL  +   + A  R     ++    +
Sbjct: 389 LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE----E 444

Query: 434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA 493
            + LL   K  E       V+ +   + +  +++  +  E   + LE +++E++ RL+ A
Sbjct: 445 AEALLEAGKCPECGQP---VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501

Query: 494 ENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER-RIKELSFQAEEDRK 552
           E   L   +  I++LE+R RE   EL  E+R   + ++   +  R R  EL  +AEE R+
Sbjct: 502 E--DLVEAEDRIERLEER-REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558

Query: 553 NHERMQDLVDKLQQKIKTYKRQIEE-AEEIAALN-----LAKFRKAQQELEE-AEERADL 605
                ++  ++ ++++     ++ E  E I +L      LA    A+ E+E   E+R  L
Sbjct: 559 AAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL 618

Query: 606 AEQ 608
           AE 
Sbjct: 619 AEL 621

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.7 bits (163), Expect = 3e-11
 Identities = 74/358 (20%), Positives = 154/358 (43%), Gaps = 25/358 (6%)

Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN-AIANAAEKKAKAID 210
           K + R  EAE  +E   + +  LE   + L  ++E L+ + ++A       AE +   + 
Sbjct: 169 KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELA 228

Query: 211 KIIGEWKLK----------VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 260
            ++ + K            +  L  EL+  Q+E      E+  LK   EE +E+LE ++ 
Sbjct: 229 LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQE 288

Query: 261 ENKNLADEVKDLL-------DQIGEGGRNIHEVEKARKRLEVEKDELQAALE-------E 306
           E   L +E+++L        +++ E    + E+E+  + L+ + + L+  LE       E
Sbjct: 289 ELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Query: 307 AEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGI 366
            E  L + E      + +LS    E ++  +  +++L +++  L E +   ++ + ++  
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408

Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
           +E R   L   LE+ ++ L++ +    + +TEL + +E+L EL  Q   +    ++LE E
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468

Query: 427 LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIK 484
           L  L  +L  L  E  + E +  +   +           +        +   +   IK
Sbjct: 469 LAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIK 526

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 65.9 bits (161), Expect = 5e-11
 Identities = 52/283 (18%), Positives = 124/283 (43%), Gaps = 10/283 (3%)

Query: 326 SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLL 385
           S+A        +    +L+ ++  LE  +R     + +L  +E R + L  EL ++ + +
Sbjct: 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718

Query: 386 EQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE 445
            + ++   Q E E     E+L EL    +S+      ++ EL+ L + ++EL  E    +
Sbjct: 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL--EEDLHK 776

Query: 446 EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI 505
            +     ++A      +   Q      E+    +E +++E++ +L        +  +K I
Sbjct: 777 LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL-NRLTLEKEYLEKEI 835

Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH-------ERMQ 558
           Q+L+++  +L+ ++   ++   +      + E  ++EL     +            + ++
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895

Query: 559 DLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601
             + +L++KI+  + QIE+  +  +   AK    ++EL E E+
Sbjct: 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 65.9 bits (161), Expect = 6e-11
 Identities = 65/261 (24%), Positives = 124/261 (47%), Gaps = 15/261 (5%)

Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQ-RLATEVEDLQLEVDRANAIANA-------AE 203
           +L+ RL E E+ +E LN+K+  L + +Q R+  ++ +L+ E+                AE
Sbjct: 262 ELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321

Query: 204 KKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENK 263
           ++   ++  I +   ++++L  E++  +K     + E   LK   E+ + +LE V +E  
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381

Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL 323
              DE+KD  +++ +  R I+E+++   RL+ E   L   L +  AA+   E K      
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK----IN 437

Query: 324 ELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE--- 380
           EL +   +    IK+ + +L+ +   L + ++   D +E+   VE+  + LQ EL E   
Sbjct: 438 ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497

Query: 381 SRQLLEQADRGRRQAETELAD 401
             +  E+  RG R  E  L  
Sbjct: 498 QARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 105/503 (20%), Positives = 206/503 (40%), Gaps = 54/503 (10%)

Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
             +L+  + E ++ + +L  ++  LE+ KQ L   + +L+ +++   A     E K   +
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335

Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
            + + E + K+++L  EL++ + E      EL  L+   EE +EQLE +R +   L  ++
Sbjct: 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
             L ++I      +  +E  R+RL+ E +EL   LEEAE    Q E + L  +LE     
Sbjct: 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE----- 450

Query: 330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
            E Q+ ++R ++ L++++  LEE ++A D A  +L     +  A  + LE  ++ LE   
Sbjct: 451 -ELQEELERLEEALEELREELEEAEQALDAAEREL----AQLQARLDSLERLQENLEGFS 505

Query: 390 RGRRQAETELADAHEQLNELSAQ-------ATSISAAKRKLEGELQTLHSDLDELLNEAK 442
            G +      +     L  LS           +I AA   L G LQ +  +      +A 
Sbjct: 506 EGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRLQAVVVENLNAAKKAI 562

Query: 443 NSEEKAKKA-------------------MVDAARLADELRAEQDHAQTQEKLRKALE--- 480
              ++ +                           +   L   +D  +   KLRKAL    
Sbjct: 563 AFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622

Query: 481 ---------TQIKELQIRLDEAENNALKGGKKAIQK--LEQRVRELENELDGEQRRHADA 529
                        EL  +L          G        +     +  + +   +R   + 
Sbjct: 623 GGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEEL 682

Query: 530 QKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF 589
           ++ + + E +I EL     E RK  E +++ +++L+++++   RQI    +  A   A+ 
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 590 RKAQQELEEAE-ERADLAEQAVS 611
            + ++ + +   E  +L  +   
Sbjct: 743 EQLEERIAQLSKELTELEAEIEE 765

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 94/482 (19%), Positives = 209/482 (43%), Gaps = 35/482 (7%)

Query: 153 LQARLAEAEETIESLNQKVIALEKTKQRLA----------TEVEDLQLEVDRANAIANAA 202
           L++ LAE +E IE   ++     +T+               E+E L+ E++         
Sbjct: 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET 270

Query: 203 EKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRREN 262
           E++ + + + + + + ++++L  E D    E      +   ++   EE +++ E +R   
Sbjct: 271 EREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330

Query: 263 KNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQ 322
           +      +   ++      +  ++E+  + L  E  EL++ LEEA  A+E    ++    
Sbjct: 331 EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIE--- 387

Query: 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESR 382
            EL +   E ++        L + +  LEE +  RD+ RE+   +E      +  +EE+ 
Sbjct: 388 -ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446

Query: 383 QLLE--------QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDL 434
            LLE        Q   G    ET + +  E++ EL A+   +     ++E  L+    DL
Sbjct: 447 ALLEAGKCPECGQPVEGSPHVET-IEEDRERVEELEAELEDLEEEVEEVEERLERA-EDL 504

Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
            E  +  +  EE+ +      A   + +  +++ A+   +    LE + +E +    EAE
Sbjct: 505 VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564

Query: 495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
             A +  ++ + +L  ++ EL+  ++  +R        +R     I +   + E  R+  
Sbjct: 565 EEAEEA-REEVAELNSKLAELKERIESLER--------IRTLLAAIADAEDEIERLREKR 615

Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
           E + +L D+ ++++   + +  E E     + A+  +A+++ E AEE  +  E+ + ++R
Sbjct: 616 EALAELNDERRERLAEKRERKRELEA--EFDEARIEEAREDKERAEEYLEQVEEKLDELR 673

Query: 615 TK 616
            +
Sbjct: 674 EE 675

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.5 bits (155), Expect = 3e-10
 Identities = 84/355 (23%), Positives = 155/355 (43%), Gaps = 21/355 (5%)

Query: 148 FPRRKLQAR--LAEAEETIESLNQKVIALEKTKQRLATEVE------DLQLEVDRANAIA 199
           F R+K +A   L E EE IE L+  +    +  +RL  E E       L  E        
Sbjct: 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE 227

Query: 200 NAAEKKA-----KAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRL-KGAYEEAQE 253
              EK+A     +AI++ +   + +++ L  E+   +K        L  L K   +  +E
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287

Query: 254 QLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ 313
           +   V+ +   L  E+  L   I E  R + + E+   +LE E D+L A +EE E  +E+
Sbjct: 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347

Query: 314 EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANA 373
           E  +  R +L    A  + +    R   +L++V     E +    D RE+L  ++R  N 
Sbjct: 348 E--RKRRDKLTEEYAELKEELEDLR--AELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSD 433
           L+ EL+  ++ L++           +A    ++NEL  +    +   +K E +L+ L +D
Sbjct: 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463

Query: 434 LDEL---LNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKE 485
           L +    L + K   ++ +K +    R   E  A+   ++ + +  +A+E  +K 
Sbjct: 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 88/492 (17%), Positives = 215/492 (43%), Gaps = 28/492 (5%)

Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
            + +    E E+ IE+L +++  LE+ K+RL      L              E++ + ++
Sbjct: 221 IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELE 280

Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
           +++ E + K++ L  EL+   +E       L  L    EE  E+L+++    + L ++++
Sbjct: 281 RLLEELEEKIERLE-ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLE 339

Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANA 330
            L  ++ E     +E+ K  +    E +E    LE+      +   ++  A  EL +  A
Sbjct: 340 KLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELA 399

Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD- 389
           E    ++  Q++L++++  LEE +R  ++  E++  +E + N L+++     +L    + 
Sbjct: 400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK 459

Query: 390 -----RGRRQAETELADAH--------EQLNELSAQATSISAAKRKLEGELQTLHSDLDE 436
                +   +   +             E+      +   +     +LE EL+ L  +L E
Sbjct: 460 CPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIE 519

Query: 437 LLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN 496
           LL   +  +E+ ++ +     L +EL   ++  Q Q+   +  + + +  +++    E  
Sbjct: 520 LLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELR 579

Query: 497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN------------LRKTERRIKELS 544
            L+  K+ +++L +R++EL+ +L   + R +  ++             L + E  ++   
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639

Query: 545 FQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERAD 604
            +     +  E +Q  +++L++K++  + +I    +    N  +  +  +ELE+ EE  +
Sbjct: 640 EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQ-RIENEEQLEEKLEELEQLEEELE 698

Query: 605 LAEQAVSKIRTK 616
              + + ++  K
Sbjct: 699 QLREELEELLKK 710

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 70/351 (19%), Positives = 156/351 (44%), Gaps = 12/351 (3%)

Query: 151  RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
            R   A L    E +E L +++ +L+   +R+   +++L  E+  A+      EK+ + ++
Sbjct: 670  RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 211  KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
            +   + K ++++L  +L + ++E  N  +EL  L+   EE +E L  +     +L  E +
Sbjct: 730  QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EAR 787

Query: 271  DLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANA 330
                +I E    + ++E+   R+E    E++  L       E  E ++     EL +   
Sbjct: 788  LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQEQRI 843

Query: 331  EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADR 390
            + ++ IK  +++++++    EE +   ++    L  +E R   L+ E +E    L + +R
Sbjct: 844  DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903

Query: 391  GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKK 450
               + E ++    ++L+EL A+  ++     ++E          +E L+      E  + 
Sbjct: 904  KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV 963

Query: 451  AMVDAARLADELRAEQDHAQTQEKL------RKALETQIKELQIRLDEAEN 495
                 A     + A Q++ +  ++L      R  LE + K +  R++E E 
Sbjct: 964  EEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 61.3 bits (148), Expect = 2e-09
 Identities = 100/475 (21%), Positives = 220/475 (46%), Gaps = 26/475 (5%)

Query: 159  EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL 218
            EA++  E   +K  A +K  +      E  + E + A   A AAE+KA+A +K   E K 
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378

Query: 219  KVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR--ENKNLADEVKDLLDQI 276
            K D    + +  +K            K   EE +++ + +++    K  ADE K   ++ 
Sbjct: 1379 KADAAKKKAEEKKKA--------DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430

Query: 277  GEGGRNIHEVEKARKRLEVEK--DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK 334
             +      + E+A+K  E +K  +E + A E  + A E ++    + + E ++   EA+K
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490

Query: 335  NIKRYQQQLKDVQTALEEEQRARD--DAREQLGIVERRANALQNELEESRQLLE--QADR 390
              +  +++  + + A E +++A +   A E     E +      + +E+++  E  +AD 
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550

Query: 391  GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLN----EAKNSEE 446
             ++  E + A+  ++  E        + A RK E   +   + ++E++     E K   E
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610

Query: 447  KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL-QIRLDEAENNALKGGKKAI 505
            +AKKA  +A   A+EL+  ++  +  E+L+K    + K+  +++  E EN      +   
Sbjct: 1611 EAKKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669

Query: 506  QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
             + +++  E   + + ++++ A+A K   +  ++ +EL  +  E++K  E ++   ++ +
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729

Query: 566  QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSV 620
             K +  K++ EE ++ A     + +K ++E ++        E+   +IR +  +V
Sbjct: 1730 IKAEEAKKEAEEDKKKA----EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 60.4 bits (147), Expect = 3e-09
 Identities = 87/426 (20%), Positives = 183/426 (42%), Gaps = 48/426 (11%)

Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
           R +L+ R  E  + +E       A  +  + L  + +DL+   +     A   E + +  
Sbjct: 316 REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA 375

Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
            + + + + ++++L  E++  ++   +   +L   +   EE +E+ + +R     L   +
Sbjct: 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL 435

Query: 270 KDLLDQIGEGGRNIHE---------------VEKARKRLEVEKDELQAALEEAEAALEQE 314
           +   +++ E    +                 VE   +      +EL+A LE+ E  +E+ 
Sbjct: 436 RTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED-RERVEELEAELEDLEEEVEEV 494

Query: 315 ENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
           E ++ RA     +   EA+  I+R +++ +D++  + E +   ++ RE+   +  RA  L
Sbjct: 495 EERLERA-----EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549

Query: 375 QNELEESR----QLLEQADRGRR------QAETELADAHEQLNELSAQATSISAAKRKLE 424
           + E EE R    +  E+A+  R           EL +  E L  +     +I+ A+ ++E
Sbjct: 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIE 609

Query: 425 GELQTLHSDLDELLNE------AKNSEEKAKKAMVDAARL----ADELRAEQDHAQTQEK 474
             L+     L EL +E       K   ++  +A  D AR+     D+ RAE+   Q +EK
Sbjct: 610 -RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668

Query: 475 LRKALETQIKELQIRLDEAEN-----NALKGGKKAIQKLEQRVRELENELDGEQRRHADA 529
           L   L  +  +LQ  +   EN       L+  ++A++   + +  L +E +  +  + D 
Sbjct: 669 LD-ELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESMYGDL 727

Query: 530 QKNLRK 535
           +  LR+
Sbjct: 728 RAELRQ 733

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.1 bits (146), Expect = 4e-09
 Identities = 78/348 (22%), Positives = 145/348 (41%), Gaps = 21/348 (6%)

Query: 185 VEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDL------AAELDASQKECRNYS 238
           V +   + ++A       E+  + +D II E + +++ L      A    A  KE R Y 
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY- 223

Query: 239 TELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL----- 293
            E + L    E  + Q EA+ R+  +L +E++ L ++I E  + + E+E+  + L     
Sbjct: 224 -EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282

Query: 294 ---EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
              E E+  ++  + E EA +   E  +   + EL  A     K      + L ++   L
Sbjct: 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI-EEL 341

Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
           E E       R++L         L+ ELE+ R  LE+ D+   +   EL D  E+L +L 
Sbjct: 342 EREIEEERKRRDKL---TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 411 AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
            +   +     +L+ ELQ L  +L +L       E K  +   +    A E++ ++   +
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 471 TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
                    E ++ +L+   D  E   L   ++ + + E + R  E  
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKE-LSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.3 bits (144), Expect = 6e-09
 Identities = 66/329 (20%), Positives = 148/329 (44%), Gaps = 18/329 (5%)

Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIH-EVEKARKRLEVEKDELQAALEEA 307
           +E + +LE  R   +NL D ++D+L+++    +++  + EKA +  E++ +  +  L   
Sbjct: 175 KETERKLERTR---ENL-DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALL 230

Query: 308 EAALEQEENKVLRAQLELSQAN---AEAQKNIKRYQQQLKD-------VQTALEEEQRAR 357
              LE+   ++   Q EL +A     E    ++  +++L++       ++  +EE Q+  
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
                ++  +E++   L+  L    + LE+ +    + E++L +  E+L EL  +   + 
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350

Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK 477
                LE EL+ L ++L+EL +  +  EE+ +      +++A             E+L  
Sbjct: 351 EELESLEAELEELEAELEELESRLEELEEQLETL---RSKVAQLELQIASLNNEIERLEA 407

Query: 478 ALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTE 537
            LE      +    E E    K  +  +++L+  + ELE EL+  Q      ++ L +  
Sbjct: 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467

Query: 538 RRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
             ++E     +   +   ++Q  +D L++
Sbjct: 468 EELEEAEQALDAAERELAQLQARLDSLER 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 56.3 bits (135), Expect = 5e-08
 Identities = 97/492 (19%), Positives = 203/492 (41%), Gaps = 41/492 (8%)

Query: 249  EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
            E+A++   A + E +  A+E +   D          + E  +K  E +KD      EEA+
Sbjct: 1197 EDARKAEAARKAEEERKAEEARKAEDA--------KKAEAVKKAEEAKKDA-----EEAK 1243

Query: 309  AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVE 368
             A E+  N+ +R   E   A+   ++   + ++  K  +    EE++  D+A++      
Sbjct: 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK-- 1301

Query: 369  RRANALQNELEESR---QLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEG 425
            ++A+  + + EE++   +  ++A+  +++A+     A E      A      AA  + E 
Sbjct: 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361

Query: 426  ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR--AEQDHAQTQEKLRKALETQI 483
              +   +   +     K ++   KKA  +  + ADE +  AE+D  +  E  + A   + 
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKA--EEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419

Query: 484  KELQIRLDEAENNALKGGKKAIQ---------KLEQRVRELENELDGEQRRHADAQKNLR 534
             +   +  E +  A +  KKA +         K E+  +  E +   E+ + AD  K   
Sbjct: 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479

Query: 535  KTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQ 594
            +  ++  E   +AEE +K  +  +   +   +K     ++ EEA++      A+  K   
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAE--AKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537

Query: 595  ELEEAEE--------RADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSK 646
            E ++AEE        +A+  ++A  K + +    A     + L  +    +    +I   
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597

Query: 647  LVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDH 706
            + L+    + + E  +K  +  + + +     E K K E L+ K+  E    E     + 
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657

Query: 707  ANKVRVAAISRK 718
             NK++ A  ++K
Sbjct: 1658 ENKIKAAEEAKK 1669

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 108/521 (20%), Positives = 225/521 (43%), Gaps = 68/521 (13%)

Query: 156 RLAEAEETIESLNQKVIALEKTKQRL---ATEVEDLQLEVDRANAIANAAEKKAKAIDKI 212
            + E    +  L +++  LEK  + L     E+E+L+ E++         E+K + +++ 
Sbjct: 208 EINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267

Query: 213 IGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDL 272
           I E K ++++L  E     KE +  + E  +L   YEE  ++L  + +    L +E+  +
Sbjct: 268 IEELKKEIEELE-EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326

Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEA 332
            ++I E       +E+ +K+L+  +  L+   E  E     EE K  + +LE  +     
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLE---ELEERHELYEEAKAKKEELERLKKR-LT 382

Query: 333 QKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE----------SR 382
               ++ +++L++++ A EE +        ++G +++    L+  +EE            
Sbjct: 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442

Query: 383 QLLEQADRGRRQAE--TELADAHEQLNELSAQATSISAAKRKLEGELQTLH--SDLDELL 438
           + L +  R     E   EL    ++L E+  +   +    R+LE  L+       L EL 
Sbjct: 443 RELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA 502

Query: 439 NEAKNSEEKAKKAMVDAA-----------RLADELRAEQ-------DHAQTQEKLRKALE 480
            + K  EEK KK  ++                 +L+ E        +  +  +K    LE
Sbjct: 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562

Query: 481 TQIKELQIRLDEAENNALKGGKKAIQKLEQRVRE--------------------LENELD 520
            ++ EL+  L E      + G +++++LE+R++E                     E EL 
Sbjct: 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELK 622

Query: 521 GEQRRHADAQKNLRKTERRIKELSFQAEEDRKN-----HERMQDLVDKLQQKIKTYKRQI 575
             +     A + L +TE+R++EL  + EE  K      +E +++   +L +++   + ++
Sbjct: 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682

Query: 576 EEAE---EIAALNLAKFRKAQQELEEAEERADLAEQAVSKI 613
           EE E   E     L K ++  +E E+A++  +  E+A+ ++
Sbjct: 683 EELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 56.3 bits (135), Expect = 6e-08
 Identities = 115/550 (20%), Positives = 229/550 (41%), Gaps = 54/550 (9%)

Query: 3    EQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAI 62
            E+  + ++ K K +   +  EA++  E   +K  A +K  +      E  + E + A   
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358

Query: 63   ANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDF 122
            A AAE+KA+A +K   E K K     +       A+ A+KKA+   K   E K   +   
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA--- 1415

Query: 123  INTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLA 182
                                       ++K      +AEE  ++   K  A E  K   A
Sbjct: 1416 --------------------------AKKKADEAKKKAEEKKKADEAKKKAEEAKK---A 1446

Query: 183  TEVEDLQLEVDRANAIANAAEKKAKAID-KIIGEWKLKVDDLAAELDASQKECRNYSTEL 241
             E +    E  +A      AE+  KA + K   E   K D+   + + ++K+        
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD------ 1500

Query: 242  FRLKGAYEEAQEQLEAVRRENKNLADEVKDLLD-QIGEGGRNIHEVEKA---RKRLEVEK 297
               K A E  ++  EA + E    ADE K   + +  +  +   E +KA   +K  E++K
Sbjct: 1501 -EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559

Query: 298  DELQAALEEAEAALEQEENKVLRAQL--ELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
             E +   EEA+ A E +   + +A+   +  +A  E    +   ++++K  +    EE +
Sbjct: 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619

Query: 356  ARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS 415
             + +  ++    +++   L+ +  E ++  E+     ++AE E      +  + + +   
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL----KKAEEENKIKAAEEAKKAEEDKK 1675

Query: 416  ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQD--HAQTQE 473
             +   +K E + +     L +   EAK +EE  KK   +  + A+EL+  ++    + +E
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEE-LKKKEAEEKKKAEELKKAEEENKIKAEE 1734

Query: 474  KLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNL 533
              ++A E + K  + + DE E   +   KK  +K  + +R+ +  +  E+    D +K  
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED-EKRR 1793

Query: 534  RKTERRIKEL 543
             + +++IK++
Sbjct: 1794 MEVDKKIKDI 1803

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 55.8 bits (135), Expect = 6e-08
 Identities = 94/414 (22%), Positives = 191/414 (46%), Gaps = 61/414 (14%)

Query: 245 KGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAAL 304
           +G+ ++ + Q+E   +E K+L + +  L  ++ E    I   E+ R++    +DE    L
Sbjct: 186 RGSLDQLKAQIE--EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVL 243

Query: 305 EEAEAALEQEENKVLRAQLELSQAN-AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQ 363
           EE E    +EE + L A++E  +   AE ++  +   ++++D++  LEE +  RDD   +
Sbjct: 244 EEHEE--RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE 301

Query: 364 LGI--------------VERRANALQNELEESR----QLLEQADRGRRQA---ETELADA 402
            G+              +E R   L++ LEE R       E+A+  R  A   E    + 
Sbjct: 302 AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL 361

Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL 462
            E+  EL ++      A      E++ L  +++EL     ++       + +A    +EL
Sbjct: 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV----DLGNAEDFLEEL 417

Query: 463 RAEQDHAQTQEKLRKALETQIKELQIRLDEAEN--------------------NALKGGK 502
           R E+D  + +E     LE  ++  + R++EAE                       ++  +
Sbjct: 418 REERDELREREA---ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDR 474

Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
           + +++LE  + +LE E++  + R   A ++L + E RI+ L        +  E +++L+ 
Sbjct: 475 ERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERL-------EERREDLEELIA 526

Query: 563 KLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK 616
           + ++ I+  + + EE  E AA   A+  + ++   EAEE A+ A + V+++ +K
Sbjct: 527 ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 55.5 bits (134), Expect = 8e-08
 Identities = 100/467 (21%), Positives = 215/467 (46%), Gaps = 20/467 (4%)

Query: 152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
            L+A L E EE +E L      LEK +++L     +L+   +  N +A   E++ K +++
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 212 IIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKD 271
            + E + +++     L   ++  +    EL  L  A EE QE+LE + +E + L  E+++
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428

Query: 272 LLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE 331
           L ++I +    I+++E     +                 L +E  K L    EL     E
Sbjct: 429 LEEEIKKLEEQINQLESKELMIAELAGA-GEKCPVCGQELPEEHEKELLELYELELEELE 487

Query: 332 AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG-IVERRANALQNELEESRQLLEQADR 390
            + + ++ + +L++    LE+E R  ++   +L  + E     L+ +LE+   LLE+ + 
Sbjct: 488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEE 547

Query: 391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKK 450
            + + + +      +  E   Q       + +L    +    +L E L E K   ++ ++
Sbjct: 548 LKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607

Query: 451 AMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQ 510
            +     L   L   +   + +E   + LE+++++L ++ +  E       + A+++LE+
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAE-EELESELEKLNLQAELEELL-----QAALEELEE 661

Query: 511 RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT 570
           +V ELE E+  E +R  + ++ L +    +++L  + E+ R+        +++L +K+  
Sbjct: 662 KVEELEAEIRRELQR-IENEEQLEEKLEELEQLEEELEQLREE-------LEELLKKLGE 713

Query: 571 YKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKG 617
            ++ IEE E       A+  + ++ELE+ E+  +L E+   K+   G
Sbjct: 714 IEQLIEELES----RKAELEELKKELEKLEKALELLEELREKLGKAG 756

Length = 908

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 55.0 bits (133), Expect = 1e-07
 Identities = 79/318 (24%), Positives = 138/318 (43%), Gaps = 16/318 (5%)

Query: 293 LEVEKDELQAALEEAEAALEQ-----EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ 347
           LE +K EL+  L   E+ L Q     E+ + L AQL         QK IK  + ++++++
Sbjct: 2   LERQKRELENQLYRKESELSQLSSKLEDEQALVAQL---------QKKIKELEARIRELE 52

Query: 348 TALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLN 407
             LE E+ AR  A +    + R    L   LEE+           ++ E ELA   + L 
Sbjct: 53  EELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLE 112

Query: 408 ELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK-KAMVDAARLADELRAEQ 466
           E + Q     A  RK   +     S+  E L + K   EK K +   +   L  +L    
Sbjct: 113 EANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIA 172

Query: 467 DHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRH 526
                 EK  K LE+Q+ ELQ++LDE     L        +L+    +L  +L+  + + 
Sbjct: 173 KAKLNAEKKAKQLESQLSELQVKLDEL-QRQLNDLTSQKSRLQSENSDLTRQLEEAEAQV 231

Query: 527 ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNL 586
           ++  K   + E +++E     EE+ +    +Q  + +L+  + + + Q+EE  E  A   
Sbjct: 232 SNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELE 291

Query: 587 AKFRKAQQELEEAEERAD 604
            +  KA  E+++   + +
Sbjct: 292 RQLSKANAEIQQWRSKFE 309

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 118/591 (19%), Positives = 251/591 (42%), Gaps = 47/591 (7%)

Query: 10  KLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKK 69
           K   + + +    E E+ IE+L +++  LE+ K+RL      L              E++
Sbjct: 216 KKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEE 275

Query: 70  AKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCL 129
            + +++++ E + K            +     +  +  +++ G   L   L+ +      
Sbjct: 276 LRELERLLEELEEK---------IERLEELEREIEELEEELEGLRALLEELEELLEKLKS 326

Query: 130 LFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQ 189
           L                     KL+   +E EE  E  N+    LE+  + L   +E+L+
Sbjct: 327 LEERLEKL------------EEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELE 374

Query: 190 LEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYE 249
            E+++A       E+  + + + + E    ++++  EL+  +KE      EL  L+   +
Sbjct: 375 KELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434

Query: 250 EAQEQLEAVRRENKNLADEV----------KDLLDQIGEGGRNIHEVEKARKRLEVEKDE 299
           + +EQ+  +  +   +A+            ++L ++  +    ++E+E      E+ +++
Sbjct: 435 KLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREK 494

Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE--EQRAR 357
            +A L E    LE+E  ++    +EL +     ++ ++   ++L+++   LEE  E+   
Sbjct: 495 EEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQL 554

Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSIS 417
              +E+L  +E R   L+  LEE R L  + +        EL +  E+L EL  +   + 
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKE--------ELEELRERLKELKKKLKELE 606

Query: 418 AAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK 477
               +LE  LQ+L  +L E  NE + +EE+ +  +      A+     Q   +  E+  +
Sbjct: 607 ERLSQLEELLQSL--ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVE 664

Query: 478 ALETQIKELQIRLDEAEN--NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK 535
            LE +I+    R++  E     L+  ++  ++LEQ   ELE EL  +        + L  
Sbjct: 665 ELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE-ELLKKLGEIEQLIEELES 723

Query: 536 TERRIKELSFQAEEDRKNHERMQDLVDKLQQK-IKTYKRQIEEAEEIAALN 585
            +  ++EL  + E+  K  E +++L +KL +  ++    +   A+  A  N
Sbjct: 724 RKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEAN 774

Length = 908

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 85/484 (17%), Positives = 181/484 (37%), Gaps = 59/484 (12%)

Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
             + + R        + L      L++ +  L  E+     ++    +     E +  A 
Sbjct: 280 AEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAF 339

Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVR--------RE 261
           +    E +L+ D    +L + + E       L  L G +++ Q + E ++        R+
Sbjct: 340 EDADIE-QLQAD--LDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERD 396

Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKA-----RKRLEVEKDELQAALEEAEAALEQEEN 316
            +   + +  + ++       I E  +A     R++LE  K E      E E  L + + 
Sbjct: 397 LEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQ 456

Query: 317 KVLRAQL--ELSQANAEAQKNIKRYQ-------QQLKDVQTALEEEQRARDDAREQLGIV 367
           ++  A    E  +      + +++ Q         ++ +Q+ L + ++ RD+A E L   
Sbjct: 457 RLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRA 516

Query: 368 ERRANALQNELEE-SRQLLEQA---------------DRGRRQAETEL---ADAHEQLNE 408
           ERR   L+  L+E   QL  QA               +   +    EL    D   QL E
Sbjct: 517 ERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVE 576

Query: 409 LSAQATSISAAKR----------KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
            S   T    +              E EL+      +E L  A   +++A++ +V A   
Sbjct: 577 GSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAE 636

Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
            +E +  +  A+T  K  +    +++  Q  L +    A+    +  Q+ E ++R+L+ +
Sbjct: 637 LEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAI---AERKQQAETQLRQLDAQ 693

Query: 519 LDGEQRRHADAQKNLRKT--ERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE 576
           L     +     + L+    E R + L+     + +   ++  L   ++      K +++
Sbjct: 694 LKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLK 753

Query: 577 EAEE 580
           E ++
Sbjct: 754 ELKK 757

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 53.9 bits (129), Expect = 2e-07
 Identities = 52/271 (19%), Positives = 98/271 (36%), Gaps = 8/271 (2%)

Query: 332 AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRG 391
             +N++    QL D++  L   +     A+ +    E    A ++EL+++RQ  E   + 
Sbjct: 65  LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQE 124

Query: 392 RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKA 451
              A   LA A ++L  L+ QA  +    + L  + + L +    L    K  +  A + 
Sbjct: 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184

Query: 452 MVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQR 511
                 L       +  AQ       A + + +EL  R   A+  A        Q ++QR
Sbjct: 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTA--------QAIQQR 236

Query: 512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
             ++  +      R    ++  R+ +R     +   +E  +     Q  V   QQ   T 
Sbjct: 237 DAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ 296

Query: 572 KRQIEEAEEIAALNLAKFRKAQQELEEAEER 602
           + Q+               +AQ +L  +  R
Sbjct: 297 RGQVLAGAAQRVAQAQAQAQAQAQLLSSANR 327

Length = 499

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 53/341 (15%), Positives = 143/341 (41%), Gaps = 14/341 (4%)

Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK------NIKRYQQQLKDVQ-TAL 350
            E     E+A   LE+ E  + R  L + +   + ++        +RYQ  LK+ +    
Sbjct: 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225

Query: 351 EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL- 409
            E  + ++    Q   +ER+  +L+ ELE+  + + + ++   + E  L + ++++ +L 
Sbjct: 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG 285

Query: 410 SAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHA 469
             +   +     +LE E+ +L   + E   E +++EE+  K   +  +L  E+   +   
Sbjct: 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345

Query: 470 QTQEKLRKALETQIKELQIRLD------EAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
           + + K R  L  +  EL+  L+      E  +      +  ++   +++ +L+ E++  +
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA 583
           R     Q+ L++    + +L+            +++  +    +IK  + ++E+     +
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 584 LNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGS 624
               +    ++E +  E+     ++ +++   +  +     
Sbjct: 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 53.8 bits (129), Expect = 3e-07
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 21/182 (11%)

Query: 396 ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL---LNEAKNSEEKAKKAM 452
           + EL  A +  +EL  Q + +++ +R L+ +L  L  + D L   LN   ++++K K++M
Sbjct: 419 QAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSM 478

Query: 453 VDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI------- 505
               +    L++E D     EK       Q+ E + R  E E  A +   +A        
Sbjct: 479 QSMEK---RLKSEADSRVNAEK-------QLAEEKKRKKEEEETAARAAAQAAASREECA 528

Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
           + L+Q  ++LE E+   +      ++  R  E+  +EL    +E  K  E +   +  +Q
Sbjct: 529 ESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKY-QESEKETEVLMSALQAMQ 587

Query: 566 QK 567
            K
Sbjct: 588 DK 589

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 63/308 (20%), Positives = 128/308 (41%), Gaps = 24/308 (7%)

Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLK 344
           + E+   +   E +E + A  EA  AL+Q    + R Q E      + +  I   +QQ +
Sbjct: 625 QAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAE 684

Query: 345 DVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHE 404
                L+ + +          ++E++   L+   ++ R+L  +     +  E EL +   
Sbjct: 685 TQLRQLDAQLKQ---------LLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLA 735

Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDEL------LNEAKNSEEKAKKAMVDAARL 458
           QL+     A   + AK +L+   +    +L  L      + E K   E+ +  +   A  
Sbjct: 736 QLSAAIEAA--RTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVR 793

Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGK---KAIQKLEQRVREL 515
             E+R  +   Q     R +L  +   L I+L E E++A +  +   + I+  + R ++L
Sbjct: 794 RPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKL 853

Query: 516 ENELDG-EQRRHA--DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK 572
           E E    E++     +  + LR   R++ EL   A  ++      + L D+L++  +  K
Sbjct: 854 EQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANANQAEGSISERL-DQLEEFKRKRK 912

Query: 573 RQIEEAEE 580
           R   + ++
Sbjct: 913 RLSGDLKK 920

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 79/365 (21%), Positives = 160/365 (43%), Gaps = 24/365 (6%)

Query: 11  LKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN-AIANAAEKK 69
            K K + +    + E T E+L +    LE   + L  ++E L+ + ++A       AE +
Sbjct: 168 SKYKERKEEAERKLERTEENLER----LEDLLEELEKQLEKLERQAEKAERYQELKAELR 223

Query: 70  AKAIDKIIGEWKLK----VSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINT 125
              +  ++ + K        L+ E+ R        +++ +  +K I E  LK  L+ +  
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEE--LKSELEELRE 281

Query: 126 LYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEV 185
               L    L  K             +L+  ++   E +E L  ++  LE+  + L  ++
Sbjct: 282 ELEELQEELLELKEE---------IEELEGEISLLRERLEELENELEELEERLEELKEKI 332

Query: 186 EDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK 245
           E L+ E++    +    E+    +++   E + K+  L  EL+   +  R    EL  L+
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE---ELAELE 389

Query: 246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALE 305
               E + +LE ++RE ++L + ++ L +++ +    + E+E   + L+ E +EL   LE
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449

Query: 306 EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
           E E  LE+  +++   + EL++   E  + +++    L+     LE EQRA    R  L 
Sbjct: 450 ELEEQLEELRDRLKELERELAELQ-EELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508

Query: 366 IVERR 370
            +E  
Sbjct: 509 ALESG 513

Length = 1163

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 93/460 (20%), Positives = 198/460 (43%), Gaps = 63/460 (13%)

Query: 2   GEQIDQLNKLKTKRK-LQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRAN 60
            E  DQ+  L+ + K LQ  + +  + +    + V  LEK ++RL  E ++LQ  ++ A 
Sbjct: 422 EELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAE 481

Query: 61  AIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSL 120
           A     E K                 Q+E+   + I +  E++    ++   E   K   
Sbjct: 482 AALELEESKVLR-------------AQVEL---SQIRSEIERRLAEKEEEF-ENTRKNHQ 524

Query: 121 DFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQR 180
             I +L   L      E   K        ++KL+  + E E  ++  N+     +K  ++
Sbjct: 525 RAIESLQATL------EAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKK 578

Query: 181 LATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQK-------- 232
              +V++LQ +V+        A ++    ++     + ++++L + L+ +++        
Sbjct: 579 YQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETE 638

Query: 233 --------------------ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDL 272
                               + R    EL  L+   +EA  +L+A     K    +   L
Sbjct: 639 LAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARL 698

Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKV----------LRAQ 322
            +++ +   +   +E+ RK+LE +  ELQ  L+EAEAA  +   K+          L A+
Sbjct: 699 AEELRQEQEHSQHLERLRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAE 758

Query: 323 LEL-SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEES 381
           L+   + +AE QKN+++ ++++K++Q  +EE+++  +  ++ +  ++ +    + +LEE+
Sbjct: 759 LDGEQRRHAETQKNLRKMERRVKELQFQVEEDKKNLERLQDLVDKLQAKIKTYKRQLEEA 818

Query: 382 RQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKR 421
            ++ +      R+A+ EL DA E+ +        + A  R
Sbjct: 819 EEVAQINLSKYRKAQRELEDAEERADTAERSLNKLRAKSR 858

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 51.3 bits (122), Expect = 2e-06
 Identities = 78/377 (20%), Positives = 155/377 (41%), Gaps = 19/377 (5%)

Query: 249  EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAE 308
            EEA++  +A R E    A++ +    +      +  + E ARK  EV K E     E+A 
Sbjct: 1143 EEARKAEDAKRVEIARKAEDARKA--EEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200

Query: 309  AALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVE 368
             A    + +  R   E  +A         +  + +K  + A ++ + A+    E+     
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDA------KKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254

Query: 369  RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQ 428
            R+    +      RQ   +A+  R+  E + A+  ++ +E         A + K + E  
Sbjct: 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314

Query: 429  TLHSDLDELLNEAKNSEEKAKKAMVDAARLAD----ELRAEQDHAQTQEKLRKALETQIK 484
                +  +   EAK   + AKK   +A + A+    E  A  D A+  E+  +A E + +
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374

Query: 485  ELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD-----GEQRRHADAQKNLRKTERR 539
            E + + D A+  A +  KK   + +++  E + + D        ++ AD  K   + +++
Sbjct: 1375 EAKKKADAAKKKAEE--KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432

Query: 540  IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEA 599
              E   +AEE +K  E  +   +  + +    K +  +  + A     + +KA +  ++A
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492

Query: 600  EERADLAEQAVSKIRTK 616
            EE    A++A      K
Sbjct: 1493 EEAKKKADEAKKAAEAK 1509

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 41/220 (18%), Positives = 93/220 (42%), Gaps = 1/220 (0%)

Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
              + RLA+ E  I+ L  ++  LE+  +      + L  E             + + +D
Sbjct: 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377

Query: 211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
           K   E + ++ D   +L+  ++E      EL RL+   +   E+L  +      +  ++ 
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437

Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANA 330
           +L ++  +    I + E   ++L  +  + +  L + +   ++ E ++ + Q EL++A A
Sbjct: 438 ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497

Query: 331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERR 370
           +A+   +   +  + V+  L+   +       QLG V  R
Sbjct: 498 QARA-SEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGER 536

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 68/302 (22%), Positives = 114/302 (37%), Gaps = 34/302 (11%)

Query: 222  DLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGR 281
            D  AEL    +        L   +   ++ + QLE      K     +  LL ++     
Sbjct: 834  DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQA----KEGLSALNRLLPRL----- 884

Query: 282  NIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE-LSQANAEAQKNIKRYQ 340
            N+   E    R+E  +++L  A EEA+  ++Q  N +  AQLE +        +  ++ +
Sbjct: 885  NLLADETLADRVEEIREQLDEA-EEAKRFVQQHGNAL--AQLEPIVSVLQSDPEQFEQLK 941

Query: 341  QQLKDVQTALEEEQRARDDAREQLGIVERRA-----NALQNELEESRQLLEQADRGRRQA 395
            Q   D Q A + ++ A+  A     +V+RRA     +A    L ++  L E+  +   QA
Sbjct: 942  Q---DYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDA-AEMLAKNSDLNEKLRQRLEQA 997

Query: 396  ETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKN-----SEEKAKK 450
            E E   A EQL +  AQ    +     L+         L EL  E ++          ++
Sbjct: 998  EQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEER 1057

Query: 451  AMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQ 510
            A      L   L A +         R  LE Q+   +  +D       K  +   +  EQ
Sbjct: 1058 ARARRDELHARLSANRSR-------RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQ 1110

Query: 511  RV 512
             V
Sbjct: 1111 VV 1112

Length = 1486

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 90/406 (22%), Positives = 192/406 (47%), Gaps = 35/406 (8%)

Query: 201 AAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRR 260
             EK+ + + + I E   ++ +L  EL+  +KE +    EL  LK   EE +++LE++  
Sbjct: 197 EKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEG 252

Query: 261 ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLR 320
             + L +++++L ++I E  + I E+E+  K L+ E  E      +     E+  +++  
Sbjct: 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELRE 311

Query: 321 AQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEE 380
            +  LS+   E    I+   ++L++ +  LEE ++   +  ++L  +E R        EE
Sbjct: 312 IEKRLSRLEEEI-NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH----ELYEE 366

Query: 381 SRQLLEQADRGR-RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLN 439
           ++   E+ +R + R          ++L EL      I     K+   +  L  ++ E L 
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE-LK 425

Query: 440 EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK 499
           +A    +KAK       R   E        + +++L +    ++K ++  L E E     
Sbjct: 426 KAIEELKKAKGKCPVCGRELTE--------EHRKELLEEYTAELKRIEKELKEIEE---- 473

Query: 500 GGKKAIQKLEQRVRELENELDGEQR--RHADAQKNLRKTERRIKELSFQ-AEEDRKNHER 556
                 +KL + +RELE  L  E    +  +  + L++ E ++K+ + +  E+  + +E+
Sbjct: 474 ----KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529

Query: 557 MQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEER 602
           +++ + KL+ +IK+ K+++E+ EE+      K  + +++L+E EE 
Sbjct: 530 LKEKLIKLKGEIKSLKKELEKLEELK----KKLAELEKKLDELEEE 571

Length = 880

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 74/342 (21%), Positives = 129/342 (37%), Gaps = 19/342 (5%)

Query: 215 EWKLKVDDLAAELDASQKECRNY----STELFRLKGAYEEAQEQLEAVRRENKNLADEVK 270
           E++ +++ L A   A +   + Y     T L R       AQ Q + + R+     DE++
Sbjct: 234 EYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293

Query: 271 DLLDQIGEGGRNIHEVEKARKRLEVEKDELQA-----ALEEAEAALEQEENKVLRAQLEL 325
              ++  E       +E+    L    + LQ        EE E A    E     A  + 
Sbjct: 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA-DA 352

Query: 326 SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLL 385
            QA  EA+  ++  +++L +    L++ +R    AREQL     RA        E    L
Sbjct: 353 RQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAAL 412

Query: 386 ---EQADRGRRQAETELADAH-EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEA 441
              E  + G   A  + AD    Q +E  A          + E       +  DEL  EA
Sbjct: 413 AAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEA 472

Query: 442 KNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE--AENNALK 499
           + +  +A+ A  D A   +  R     A  Q +LR+     + +    L +  + +  L+
Sbjct: 473 EQAAARAELA--DEAVHREGARLAWVDA-WQAQLRELTILAVDDQPGALADLDSWDALLQ 529

Query: 500 GGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIK 541
           G       +   V+ L +EL  E+     A++ L +    ++
Sbjct: 530 GEAPVRVAVYSAVQPLADELTRERAALRLAEEVLEEERDALR 571

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 10/187 (5%)

Query: 341 QQLKDVQTALEEEQRARDD-AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETEL 399
           +Q+K  +  LE  +       +E  GI+  +     +E+ E+++ LE A     +A  + 
Sbjct: 168 EQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQR 227

Query: 400 ADAHEQLNELSAQATS-ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
                QL        +  S A  +L+G ++ L   LD L     +          + A+L
Sbjct: 228 DALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQL 287

Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
            ++   E        +  +      ++LQI L EAE          I  LE RV EL   
Sbjct: 288 EEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAE--------IASLEARVAELTAR 339

Query: 519 LDGEQRR 525
           ++  +  
Sbjct: 340 IERLESL 346

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 498

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 42/247 (17%), Positives = 90/247 (36%), Gaps = 23/247 (9%)

Query: 152 KLQARLAEAEETIESLNQKV-------IALEKTKQRLATEVEDLQLEVDRANAIANAAEK 204
             Q  L+     +    + V         L +  ++L  E++ L+  +  A   ++  E+
Sbjct: 54  VAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEE 113

Query: 205 KAKAIDKIIGEWKLKVDDLAAELDASQK-ECRNYSTELFRLKGAYEEAQEQLEAVRRENK 263
             + +++ + E   +++DL   L+  +     ++   L R     +    +L  VRRE  
Sbjct: 114 LTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLR---GLKFLLVRLGLVRREKL 170

Query: 264 NLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEK-DELQAALEEAEAALEQEENKVLRAQ 322
                V +             E  +A   + V    E    + +    L  E  +V    
Sbjct: 171 EALVGVIEDEVA------LYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFD 224

Query: 323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA----REQLGIVERRANALQNEL 378
              S+  +E ++ I   Q +L+ +++ LE       +     RE L I E+    + ++L
Sbjct: 225 GGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEI-EKALGDVLSKL 283

Query: 379 EESRQLL 385
             +   L
Sbjct: 284 ARTEYTL 290

Length = 660

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 118/586 (20%), Positives = 268/586 (45%), Gaps = 48/586 (8%)

Query: 11  LKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKA 70
           +K    ++  + E E+ +E + +++  +      L  E+E L+ EV     +    E+  
Sbjct: 185 IKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244

Query: 71  KAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWK-LKGSLDFINTLYCL 129
           K ++ + G  +    L+ ++          +K+ + +++ + E K LK   +    L   
Sbjct: 245 KELESLEGSKR---KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEF 301

Query: 130 LFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLA------T 183
                  E+ L     +     +L+  +   EE I+ L +K   LE+ K++L        
Sbjct: 302 Y------EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355

Query: 184 EVEDLQLEVDRANAIANAAEK-KAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELF 242
           E+E+     + A A     E+ K +       + + ++++L    +  ++E    +  + 
Sbjct: 356 ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415

Query: 243 RLKGAYEEAQEQLEAVRRE-------NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEV 295
            LK   +E ++ +E +++         + L +E +  L  + E    +  +EK  K +E 
Sbjct: 416 ELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL--LEEYTAELKRIEKELKEIEE 473

Query: 296 EKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
           ++ +L+  L E E  L++E    L    EL++   E ++ +K+Y  +       LE++  
Sbjct: 474 KERKLRKELRELEKVLKKESE--LIKLKELAEQLKELEEKLKKYNLE------ELEKKAE 525

Query: 356 ARDDAREQLGIVERRANALQNELEESRQL---LEQADRGRRQAETELADAHEQLNELSAQ 412
             +  +E+L  ++    +L+ ELE+  +L   L + ++   + E ELA+  ++L EL  +
Sbjct: 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE 585

Query: 413 ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQ 472
           +        +LE  L+ L    +E L E K++E++ ++   +  +L +EL    +     
Sbjct: 586 SV------EELEERLKELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEELAET 638

Query: 473 EKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN 532
           EK  + L  +++EL+ +  E E    +  ++   +L + +  L  EL+  ++R  + +K 
Sbjct: 639 EKRLEELRKELEELEKKYSEEEY---EELREEYLELSRELAGLRAELEELEKRREEIKKT 695

Query: 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA 578
           L K +  ++E   +A+++ +  E+  + V++L++K+K YK  ++E 
Sbjct: 696 LEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKYKALLKER 740

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 52/232 (22%), Positives = 106/232 (45%), Gaps = 12/232 (5%)

Query: 379 EESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 438
           EE R+L+E+A  G  + +    +A  +L         +     +LE +L+ L    ++  
Sbjct: 155 EERRKLIEEAA-GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE 213

Query: 439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL 498
              +   E  +    + A L  +L+  +   +  E+    LE +++ELQ  L+EAE    
Sbjct: 214 RYQELKAELREL---ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE---- 266

Query: 499 KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQ 558
               K I++L+  + EL  EL+  Q    + ++ + + E  I  L  + EE     E ++
Sbjct: 267 ----KEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322

Query: 559 DLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAV 610
           + +++L++KI+  K ++EE E +         + ++  EE EE+     + +
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Length = 1163

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 46.3 bits (111), Expect = 5e-05
 Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
           AE    + +E+ ++ LE   KE +    EA   A +   K   + E+ +RE  NEL   +
Sbjct: 29  AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE 88

Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKT-YKRQIEEAEEIA 582
           +R    ++NL +    +++   + E+  K  E+ Q  ++K +++++   + Q++E E I+
Sbjct: 89  KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS 148

Query: 583 ALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
            L   + +  +  LE+ EE A    +A   I+
Sbjct: 149 GLTAEEAK--EILLEKVEEEA--RHEAAVLIK 176

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 123/705 (17%), Positives = 275/705 (39%), Gaps = 66/705 (9%)

Query: 19  ARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIG 78
            RL E  E +E L +++   E+  + L  E+++L+ +++      +  E++ + + K + 
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

Query: 79  EWKLKVS-LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNE 137
               ++S L+ +           E++ + ++  + E + K                    
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL---------------A 336

Query: 138 KSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197
           + L           +L+ +L E +E +ESL  ++  LE   + L + +E+L+ +++   +
Sbjct: 337 EELA----------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

Query: 198 IANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFR-----LKGAYEEAQ 252
                E +  +++  I   + +++ L    +  Q+E      +L       L+   EE +
Sbjct: 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

Query: 253 EQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALE 312
           E+LE ++ E + L + +++L +++ E  + +   E+   +L+   D L+  L+E      
Sbjct: 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-LQENLEGFS 505

Query: 313 QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
           +    +L+ Q  LS       + I   +     ++ AL    R +    E L   ++   
Sbjct: 506 EGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGG--RLQAVVVENLNAAKKAIA 563

Query: 373 ALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS 432
            L+         L        + +    +  + +      A  +     KL   L  L  
Sbjct: 564 FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG 623

Query: 433 ------DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL 486
                 DLD  L  AK      +   +D   +          A+T          +I+EL
Sbjct: 624 GVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKT-NSSILERRREIEEL 682

Query: 487 QIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQ 546
           + +++E E    +  +KA+ +L + + ELE EL          +K L +  R+I  L   
Sbjct: 683 EEKIEELEEKIAEL-EKALAELRKELEELEEEL-------EQLRKELEELSRQISALRKD 734

Query: 547 AEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLA 606
                   E++++ + +L +++   + +IEE EE       +  +A+ E+EE E + +  
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 607 EQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQ 666
           ++ +  +R     +                 +  + + ++   +L    E  E      +
Sbjct: 795 KEELKALREALDEL-----------------RAELTLLNEEAANLRERLESLERRIAATE 837

Query: 667 RALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKVR 711
           R L+ ++  +E  ++         ++LE  I ELE  L+     R
Sbjct: 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 9e-05
 Identities = 85/435 (19%), Positives = 178/435 (40%), Gaps = 12/435 (2%)

Query: 152  KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
            +  A  AEA E      +K     K K   A +  + + + D A   A   +KKA  + K
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412

Query: 212  IIGEWKLKVDDLAAELDASQK--ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
                 K K D+   + +  +K  E +  + E  +   A ++A+E  +A   + K    + 
Sbjct: 1413 AAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471

Query: 270  KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
             D   +  E  +   E +K  +  + + DE + A E  + A E ++ +  +   E  +A 
Sbjct: 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531

Query: 330  -AEAQKNIKRYQQQLKDVQTALEEEQRARDDAR--EQLGIVERRANALQNELEESRQLLE 386
             A+     K+ +++ K  +    EE +  ++ +  E+    E   N    + EE+++  E
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591

Query: 387  QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEE 446
                   +   E      +  + + +A   +   +K E E + +     +   E K +EE
Sbjct: 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651

Query: 447  KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQ 506
              K    +  + A+E +  ++  +  E+ +KA E + K  +    EAE    K  ++  +
Sbjct: 1652 LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKK 1709

Query: 507  KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
            K  +  ++ E     E+     A++  ++ E   K    +AEE +K+ E  + +    ++
Sbjct: 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK----KAEEAKKDEEEKKKIAHLKKE 1765

Query: 567  KIKTYKRQIEEAEEI 581
            + K  +   +E E +
Sbjct: 1766 EEKKAEEIRKEKEAV 1780

Length = 2084

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 53/282 (18%), Positives = 102/282 (36%), Gaps = 38/282 (13%)

Query: 226 ELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHE 285
           +L   QKE      ++   +    + ++QL+++  E  +L  ++ +  D + +  + I +
Sbjct: 39  QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98

Query: 286 VEKARKRLEVEKDELQAALEEAEAAL---------------EQEENKVLRAQL--ELSQA 328
           +      LEV++ E +  L E  AAL               E  +  V  A     L+ A
Sbjct: 99  LNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPA 158

Query: 329 NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
            AE    +K   +QL  V+  +  EQ        +           + +  +  QLLE+ 
Sbjct: 159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE----------QRAQQAKLAQLLEER 208

Query: 389 DRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKA 448
            +   Q  +EL+   ++L EL A  + +       E               +A+ +   A
Sbjct: 209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA-----------KAREAAAAA 257

Query: 449 KKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL 490
           + A   A     +   E       EK+  +       L+ +L
Sbjct: 258 EAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGALRGQL 299

Length = 420

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 76/381 (19%), Positives = 174/381 (45%), Gaps = 29/381 (7%)

Query: 248 YEEAQEQLEAVRRENKNLADEVKDLL-------DQIGEGGRNIHEVEKARKRLEVEKDEL 300
           YE A + L  V +E K   + ++  +       + I E  + + EV +    +  E  EL
Sbjct: 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL 219

Query: 301 QAALEEAEAALEQ-EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDD 359
           +  LE+ E  +++ EE K    +LE        + + ++ ++++++++  +EE ++  ++
Sbjct: 220 REELEKLEKEVKELEELKEEIEELEKE--LESLEGSKRKLEEKIRELEERIEELKKEIEE 277

Query: 360 AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAA 419
             E++  ++        E  +  +  E+     R+ E  L+   E++N +  +   +   
Sbjct: 278 LEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336

Query: 420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKAL 479
           + +LE EL+    +L++ L E +   E  ++A      L + L+        ++  ++  
Sbjct: 337 EERLE-ELKKKLKELEKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTPEKLEKELE 394

Query: 480 ETQIKELQIRLDEAENNALKGG-KKAIQKLEQRVRELEN----------ELDGEQRRH-- 526
           E +  + +I  + ++  A  G  KK I++L++ + EL+           EL  E R+   
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELL 454

Query: 527 ADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK--RQIEEAEE-IAA 583
            +    L++ E+ +KE+  +  + RK    ++ ++ K  + IK  +   Q++E EE +  
Sbjct: 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK 514

Query: 584 LNLAKFRKAQQELEEAEERAD 604
            NL +  K  +E E+ +E+  
Sbjct: 515 YNLEELEKKAEEYEKLKEKLI 535

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 18/271 (6%)

Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLK 344
           E+    +RL  E++E Q A       L   E+++  A+ EL+Q  + A   +   + +L+
Sbjct: 271 ELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELE 330

Query: 345 DVQTALEEEQRARDDAR-EQLGIVERRANALQNELEES----RQLLEQADRGRRQAETEL 399
                LE+++ A +DA  EQL     +  ++++ELEE       L  +    +R+ E   
Sbjct: 331 ----LLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLK 386

Query: 400 ADAHEQLNELSAQATSISAAKRKLEGEL-QTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
               EQL     +     AA R+ +      +  DL  L ++ +   E  K    +    
Sbjct: 387 QKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYE 446

Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
            +                     Q++     L++A+           ++ E  V +L++E
Sbjct: 447 LELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQ--------EQAEANVEQLQSE 498

Query: 519 LDGEQRRHADAQKNLRKTERRIKELSFQAEE 549
           L   ++R  +A + L++ ERR+ +L    +E
Sbjct: 499 LRQLRKRRDEALEALQRAERRLLQLRQALDE 529

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 54/280 (19%)

Query: 296 EKDELQAALEEAEAAL---EQEENKVLRAQLELSQANAEAQKNIKRYQQQL-------KD 345
           ++ ++   LE+A+AA    + E  + L++ L   +    + +  K+YQQ +        +
Sbjct: 24  DEKQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAE 83

Query: 346 VQTALEEEQRARDDAREQLGIVERRANALQNE---LEESRQLLEQADRGRRQAETELADA 402
           ++  L  E+         +         LQ     LE+SRQ  ++ DR R     E++D+
Sbjct: 84  LRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAR-----EISDS 138

Query: 403 HEQLNELSAQATSISAAKRKLEGELQTLHSD---LDELLNEAKNSEEKAKKAMVDA---- 455
              L++L  Q T       ++E  LQTL +    L +    A  +E  A KA+VD     
Sbjct: 139 ---LSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELA 195

Query: 456 ----------ARLADEL---RAEQDHAQTQEKLRKALETQ-IKELQIRLDEAENNALKGG 501
                     ARL  EL   R++Q  A  Q  LR  L +Q  +E +  L+  E  A + G
Sbjct: 196 QLSANNRQELARLRSELAKKRSQQLDAYLQA-LRNQLNSQRQREAERALESTELLAEQSG 254

Query: 502 K--KAIQKLEQRVRELENELD---------GEQRRHADAQ 530
              K+I    +  REL   L+           Q+R A +Q
Sbjct: 255 DLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQ 294

Length = 1109

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 48/277 (17%), Positives = 118/277 (42%), Gaps = 8/277 (2%)

Query: 284 HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
            ++E+   +L    ++++  LE  E  L++ +      +++  Q   E ++ I+  +++L
Sbjct: 185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKL---EEIQEEQEEEELEQEIEALEERL 241

Query: 344 KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
            +++   E  +  +    E   +        + EL E  +LLE+    + +   EL    
Sbjct: 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEEL-EEKIERLEELEREI 300

Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
           E+L E      ++     +L  +L++L   L++L  + +  E + ++   +   LA  L 
Sbjct: 301 EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360

Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
                 + + +  +    +  E   +L+EA        K+ + +L   + E++ EL+  +
Sbjct: 361 ERLKELEERLEELEKELEKALERLKQLEEAIQEL----KEELAELSAALEEIQEELEELE 416

Query: 524 RRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDL 560
           +   + ++ L + E  IK+L  Q  +       + +L
Sbjct: 417 KELEELERELEELEEEIKKLEEQINQLESKELMIAEL 453

Length = 908

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 16/228 (7%)

Query: 388 ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEK 447
            +R  R    +L D   QL  L  +  +    KR  E E +   S+L     +    E +
Sbjct: 65  LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSEL-----QKARQERE 119

Query: 448 AKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKEL--QIRLDEAENNALKGGKKAI 505
           A +  + AAR  +  +A+Q+ A+  ++ +  L+T++K L  Q R  EA+  +L+  +K +
Sbjct: 120 AVRQELAAAR-QNLAKAQQELARLTKQAQD-LQTRLKTLAEQRRQLEAQAQSLQASQKQL 177

Query: 506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQ 565
           Q    +++    +L     +     +NL             A+   +   R      +  
Sbjct: 178 QASATQLKSQVLDLKLRSAQIEQEAQNLATRAN-------AAQARTEELARRAAAAQQTA 230

Query: 566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKI 613
           Q I+    QI +  +  A    + R+ +++L+  E      EQ V+++
Sbjct: 231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL 278

Length = 499

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 82/334 (24%), Positives = 135/334 (40%), Gaps = 50/334 (14%)

Query: 295 VEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQ 354
           V+     A L  AE  LE +        L L Q     Q+ I+RYQ  L+++   LEE+ 
Sbjct: 310 VDMSRELAELNGAEGDLEADYQAASD-HLNLVQTALRQQEKIERYQADLEELTIRLEEQN 368

Query: 355 RARDDAREQLGIVERRANALQNELEESRQLLE--------QADRG--RRQAETELADAHE 404
              ++A E+    E RA A + E++E +  L         Q  R    +QA   L  A E
Sbjct: 369 EVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKE 428

Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA-----RLA 459
             +     A S        + + +     L  L  E K S  +A  +  + A      +A
Sbjct: 429 LCHLPDLTADSAEEWLETFQAKEEEATEKLLSL--EQKMSMAQAAHSQFEQAYQLVVAIA 486

Query: 460 DELRAEQDHAQTQEKLR-----KALETQIKELQIRLDEAENNALKGGKKAIQKLEQR--V 512
            EL   +     +E LR     + L  Q++ L++RL E E           Q+L Q+   
Sbjct: 487 GELARSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELE-----------QRLRQQQSA 535

Query: 513 RELENELDGEQRRHADAQK---NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
             L  +    Q ++ DA++     ++ E  I+ LS      R+   RM      L+Q+ +
Sbjct: 536 ERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQ--RMA-----LRQEQE 588

Query: 570 TYKRQIEEAEEIAALNLAKFRKAQQELEEAEERA 603
             + +I+   + A + LA    AQ  LE+  E++
Sbjct: 589 QLQSRIQSLMQRAPVWLA----AQNALEQLSEQS 618

Length = 1480

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 28/233 (12%)

Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLD-----------QIGEGGRNIHEVEKARKRLEV 295
           A+++A+ +LE ++ + +  A    DLL            Q GE      E+E+ RKRL  
Sbjct: 165 AWKQARRELEDLQEKERERAQR-ADLLQFQLEELEELNLQPGE----DEELEEERKRLS- 218

Query: 296 EKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR 355
             ++L  A++ A   L  E++ V  + L L     EA +++  Y  +L ++   LEE   
Sbjct: 219 NSEKLAEAIQNALELLSGEDDTV--SALSLLGRALEALEDLSEYDGKLSELAELLEEALY 276

Query: 356 ARDDAREQLGIVERRANALQNELE--ESR-QLLEQADRGRRQAETELADAHEQLNELSAQ 412
             ++A E+L           N LE  E R   L+   R       +L +  +++ E  AQ
Sbjct: 277 ELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQ 336

Query: 413 ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465
             +   +   LE E++ L     ELL  A+      KKA   A  L  E+ AE
Sbjct: 337 LDNSEESLEALEKEVKKLK---AELLEAAEALSAIRKKA---AKELEKEVTAE 383

Length = 557

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 52/252 (20%), Positives = 117/252 (46%), Gaps = 7/252 (2%)

Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
           Q++  K LE ++ EL+ +L++ E   LK  K  ++ LE  + EL  +L+  +R+  + ++
Sbjct: 665 QKRELKELEEELAELEAQLEKLEE-ELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 532 NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK 591
            L   E  +++L  + EE  +  E +++ +++LQ++++  + ++E  EE  A    +  +
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 592 AQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLK-----LVCSVTFCRQITVQITSK 646
            +++ +  +E  +  E+ + +   +  ++ R    L+     L   +    +   ++  K
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 647 LVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDH 706
           L   L    EE E   +  +  L+ ++A  E       E    K++LE ++ ELE  L  
Sbjct: 844 LDE-LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902

Query: 707 ANKVRVAAISRK 718
             +       R 
Sbjct: 903 LKEEIEKLRERL 914

Length = 1163

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 10/211 (4%)

Query: 283 IHEVEKARKRLEVEKDELQAALEEAEA------ALEQEENKVLRAQLELSQANAEAQKNI 336
           + +++  R +L   + EL  A  E  A      A   E  K  + +  + Q  A A++N+
Sbjct: 73  VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNL 132

Query: 337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAE 396
            + QQ+L  +    ++ Q       EQ   +E +A +LQ   ++ +    Q        +
Sbjct: 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192

Query: 397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAA 456
              A   ++   L+ +A +  A       EL    +   +     +  + +  +     A
Sbjct: 193 LRSAQIEQEAQNLATRANAAQA----RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA 248

Query: 457 RLADELRAEQDHAQTQEKLRKALETQIKELQ 487
             A+++R  +   Q  E  +  LE ++ +L+
Sbjct: 249 ARAEQIRERERQLQRLETAQARLEQEVAQLE 279

Length = 499

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.4 bits (103), Expect = 4e-04
 Identities = 52/260 (20%), Positives = 104/260 (40%), Gaps = 18/260 (6%)

Query: 267 DEVKDLLDQ-IGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL-E 324
           +  + LLD   G         ++A +  +  + EL+   E+     ++ +  +L+ QL E
Sbjct: 139 ELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRAD--LLQFQLEE 196

Query: 325 LSQANA-----EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE 379
           L + N      E  +  ++     + +  A++          + +        +L     
Sbjct: 197 LEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSA-----LSLLGRAL 251

Query: 380 ESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLN 439
           E+ + L + D    +    L +A  +L E S +   + A   +LE +   L  +++E L 
Sbjct: 252 EALEDLSEYDGKLSELAELLEEALYELEEASEE---LRAYLDELEFDPNRLE-EVEERLF 307

Query: 440 EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK 499
             K+   K    + D     D+++ E       E+  +ALE ++K+L+  L EA      
Sbjct: 308 ALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367

Query: 500 GGKKAIQKLEQRVRELENEL 519
             KKA ++LE+ V      L
Sbjct: 368 IRKKAAKELEKEVTAELKAL 387

Length = 557

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 16/206 (7%)

Query: 218 LKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV----KDLL 273
           +++D    E DA++ E     +++ RL+   E A+ + EA  +      D++       +
Sbjct: 72  VELDATDVEADAAELE-----SQVLRLEA--EVARLRAEADSQAAIEFPDDLLSAEDPAV 124

Query: 274 DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ 333
            ++ +G +++ E  K+  R ++E    Q    EAE A  Q + + LR QLE+     EA+
Sbjct: 125 PELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184

Query: 334 KNIKRYQ----QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQ-LLEQA 388
           + +K        +L +++    E Q        +L +++R+ + LQ E ++  Q   E+ 
Sbjct: 185 RKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEV 244

Query: 389 DRGRRQAETELADAHEQLNELSAQAT 414
                +A+  LA+  E+LN+   +  
Sbjct: 245 LEELTEAQARLAELRERLNKARDRLQ 270

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 78/370 (21%), Positives = 156/370 (42%), Gaps = 14/370 (3%)

Query: 352 EEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
           E +R + +   QL   E   + L ++LE+ + L+ Q  +  ++ E  + +  E+L    A
Sbjct: 1   ELERQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERA 60

Query: 412 QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQ-DHAQ 470
                  A+  L  EL+ L   L+E         E  KK   + A+L  +L      H +
Sbjct: 61  ARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEE 120

Query: 471 TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ 530
               LRK  +  I EL  ++++ +    K  +K   +L+  V +L  +LD   +   +A+
Sbjct: 121 ALATLRKKHQDAINELSEQIEQLQKQKAK-AEKEKSQLQAEVDDLLAQLDQIAKAKLNAE 179

Query: 531 KNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFR 590
           K  ++ E ++ EL  + +E ++    +     +LQ +     RQ+EEAE   +       
Sbjct: 180 KKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKS 239

Query: 591 KAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPL------------KLVCSVTFCRQ 638
           + + +LEEA+   +   +  + ++ +   +      L            +L   ++    
Sbjct: 240 QLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANA 299

Query: 639 ITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADIN 698
              Q  SK      L  EE E  +K   + +  ++ + EA         + K +L++++ 
Sbjct: 300 EIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELE 359

Query: 699 ELEIALDHAN 708
           +L+I L+ AN
Sbjct: 360 DLQIELERAN 369

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 37/249 (14%), Positives = 94/249 (37%), Gaps = 31/249 (12%)

Query: 456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVREL 515
             L +++   +       K  + LE ++++L+  L+E     +   +K + +LE  V +L
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR-QISALRKDLARLEAEVEQL 745

Query: 516 ENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQI 575
           E  +    +   + +  + + E R++E   +  E     E ++  +++L++++K  +  +
Sbjct: 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805

Query: 576 EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTF 635
           +E      L   +    ++ LE  E R    E+ +                         
Sbjct: 806 DELRAELTLLNEEAANLRERLESLERRIAATERRL------------------------- 840

Query: 636 CRQITVQITSKLVLHLFLLEEEFENTRKN---HQRALDSMQASLEAEAKGKAEALRMKKK 692
             +   +   +L   +  L  E E   +     +  L+++     +  +  A      ++
Sbjct: 841 --EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898

Query: 693 LEADINELE 701
           L  ++ ELE
Sbjct: 899 LSEELRELE 907

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 78/352 (22%), Positives = 134/352 (38%), Gaps = 39/352 (11%)

Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQR-- 355
            E++  L E   A EQ      +A+ EL        +     +  LK V   L  E+   
Sbjct: 605 AEMEDWLAERATAREQVRA-YFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAE 663

Query: 356 ----ARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA 411
               AR    E      R+A+ L   L ++ + LE+A+    +A++ L    EQ  +   
Sbjct: 664 LLELARQLLEEAEKQAARKAS-LDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALL 722

Query: 412 QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT 471
           +A     A      +   L  ++ E L  A +  ++      D AR  +E+ A    A  
Sbjct: 723 EAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALA-EAVA 781

Query: 472 QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
            E L    +   + L+ RL  A + A      A +KL + + E E E+        +A  
Sbjct: 782 PEMLGTPADETARALKQRLKRARDTAA-----AAEKLAEEIEEAEKEVS-------EAAA 829

Query: 532 NLRKTERRIKELSFQA----EEDRKNHERMQDLVDKLQQKIKTYKRQIEEA--------- 578
            L + E R+  L   A     E+        D   +L+++I   +R +  A         
Sbjct: 830 ALDEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEAL 889

Query: 579 -EEIAALNL----AKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSS 625
             E AAL+     A+  +  +++EE EE  +   Q V   + +   +  GS+
Sbjct: 890 VAEAAALDPDELPARLEELARDIEELEEELNELAQEVGAAKQELARMDGGST 941

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 35/236 (14%)

Query: 294 EVEKDELQAALEE--AEAALEQEENKVLRAQLELSQANAEA--QKNIKRYQQQLKDVQTA 349
            V+  ++   L+    EA   + E++VLR + E+++  AEA  Q  I+     L     A
Sbjct: 64  RVKAGQVLVELDATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPA 123

Query: 350 LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL 409
           + E  +       Q  + E R + L+ +LE             +Q E ELA    QL  L
Sbjct: 124 VPELIK------GQQSLFESRKSTLRAQLELI-------LAQIKQLEAELAGLQAQLQAL 170

Query: 410 SAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHA 469
             Q   IS                  E L   +  +EK   + ++   L  E    Q   
Sbjct: 171 RQQLEVIS------------------EELEARRKLKEKGLVSRLELLELERERAEAQGEL 212

Query: 470 QTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525
              E   + L+ QI ELQ+   + E    +   + + + + R+ EL   L+  + R
Sbjct: 213 GRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDR 268

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 42.6 bits (101), Expect = 7e-04
 Identities = 76/361 (21%), Positives = 142/361 (39%), Gaps = 73/361 (20%)

Query: 300 LQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDD 359
           L +A   A +  +      ++AQL+       A    K  + + K VQ  LE+     D 
Sbjct: 22  LSSAFARAASNGDLPTEADVQAQLD-------ALNKQKLLEAEDKLVQQDLEQTLALLDK 74

Query: 360 AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ---ATSI 416
              Q           + E E+ +Q L QA    RQA+ EL    +  +E + +     S+
Sbjct: 75  IDRQ-----------KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL 123

Query: 417 SAAKRKLE---GELQTLHSDLDE---LLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
              + +L     +LQ   +DL E    L   +   E+A+ A+   ++   ++R      +
Sbjct: 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183

Query: 471 TQEK-----LRKALETQIK--ELQIRLDEAE---NNALK--GGKK------AIQKLEQRV 512
              K      R  L+ +      Q  L       N  L+    K+       IQ+LE ++
Sbjct: 184 VGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQL 243

Query: 513 RELENELDGEQRRHADAQKNLRKTER-----RIKELSFQAEEDRKNHERMQDLV---DKL 564
           + L+  ++   +R   ++K +++ +      RI+     A+E   N +  Q L+   +KL
Sbjct: 244 QLLQEAIN--SKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKL 301

Query: 565 ----QQKIKTYKRQIEEA--------EEIAALN----LAK-FRKAQQELEEAEERADLAE 607
               QQ ++  K  ++          E+I+ L     L++   + QQ L  A+    LA+
Sbjct: 302 NTLTQQNLRV-KNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLAD 360

Query: 608 Q 608
           +
Sbjct: 361 R 361

Length = 1113

>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 293 LEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
             ++  + +AALE+AEAAL   E ++   + +L+ A A         Q + +D+  A  E
Sbjct: 82  FRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIA------QAEAQDLDQAQNE 135

Query: 353 EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ 412
            +R  + A+  +   E    A +  L+ +   L  A   ++Q    L           A 
Sbjct: 136 LERRAELAQRGVVSREELDRA-RAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVAS 194

Query: 413 ATSISAAKRKLEGELQ 428
           A    AA  + + +L+
Sbjct: 195 AE---AALDQAKLDLE 207

Length = 352

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 84/453 (18%), Positives = 176/453 (38%), Gaps = 50/453 (11%)

Query: 176  KTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKEC- 234
            +T+  L   + DLQ ++  A     + E + K  +K   E         + +D  +KE  
Sbjct: 688  QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIP 747

Query: 235  ------RNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK 288
                  +  + ++ RLK   EE +  L  +  E ++     K  L  +    R   E++ 
Sbjct: 748  ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES----AKVCLTDVTIMERFQMELKD 803

Query: 289  ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
              +++  +  +LQ +                    +L +   +  +  +  Q +L  V +
Sbjct: 804  VERKIAQQAAKLQGS--------------------DLDRTVQQVNQEKQEKQHELDTVVS 843

Query: 349  ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNE 408
             +E  ++   D +EQ+  ++ + N L++E  +    L++  +   Q         E   E
Sbjct: 844  KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLV-------ELSTE 896

Query: 409  LSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDH 468
            + +    I  AK +       L  D  E      + E   KKA      + ++++    +
Sbjct: 897  VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGY 956

Query: 469  AQTQEK-LRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHA 527
             +  E  ++   +  +K+ +  L+   N  L+  +K  +K+ + +R +  ++D ++ +  
Sbjct: 957  MKDIENKIQDGKDDYLKQKETELNTV-NAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015

Query: 528  DAQKNL--RKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE----EAEEI 581
              Q NL  RK E  +KE+    EE+ K H +    +  LQ K +  K +      +   +
Sbjct: 1016 WLQDNLTLRKRENELKEV----EEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHV 1071

Query: 582  AALNLAKFRKAQQELEEAEERADLAEQAVSKIR 614
             AL   K  + + +  + E R      A  K R
Sbjct: 1072 LALGRQKGYEKEIKHFKKELREPQFRDAEEKYR 1104

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 18/139 (12%)

Query: 220 VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEG 279
           ++ L +EL  ++KE   Y   L +L+ +        EA+  E   L  E + LLD++   
Sbjct: 31  LERLDSELRDAEKERDTYKQYLSKLE-SQNVEISNYEALDSELDELKKEEERLLDEL--- 86

Query: 280 GRNIHEVEKARKRLEVEKDELQAALEEAEAA---LEQEENKVLRAQLELSQANAEAQKNI 336
                      + LE E D+L   L E +     LE EE + LR      + N + + N+
Sbjct: 87  -----------EELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNL 135

Query: 337 KRYQQQLKDVQTALEEEQR 355
           +  + Q +     L++ ++
Sbjct: 136 QSLELQYEYSLNQLDKLRK 154

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 94/368 (25%), Positives = 172/368 (46%), Gaps = 46/368 (12%)

Query: 248 YEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
           Y   Q QLE ++ EN  L     D   +  E  + + E       L+   DEL +   E+
Sbjct: 241 YNLLQSQLEQLQEENFRLEAARDDYRIKCEELEKELAE-------LQHRNDELTSLAAES 293

Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
           +A   ++E  VLR          E+    K+ + Q++  +  LE+     +D R Q+ ++
Sbjct: 294 QAL--KDEIDVLR----------ESSDKAKKLEAQVETYKKKLED----LNDLRRQVKLL 337

Query: 368 -ERRANALQN--ELEESRQLLEQADRGRRQAET---ELADAHEQLNELSAQATSISAAKR 421
            ER A  +QN  +LEE    L++A+  R Q ET   ++ + H +L+E S +A  +    +
Sbjct: 338 EERNAMYMQNTVQLEEE---LKKANAARGQLETYKRQVQELHAKLSEESKKADKLEFEYK 394

Query: 422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALET 481
           +LE +L+ L  + + LL E  +  E  ++     A+     +A+   + + + L   L  
Sbjct: 395 RLEEKLEALQKEKERLLAERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAELLP 454

Query: 482 -QIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRI 540
            + +E  IRL + EN  L+ G++  +   +R+ EL+  L+   RR+ + +  LR   +RI
Sbjct: 455 SEYREKLIRL-QHENKMLRLGQEGSEN--ERITELQQLLEDANRRNNELETQLRLANQRI 511

Query: 541 KELSFQAEEDRKN---HERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELE 597
            EL  Q E+ +K         +    L+ K++ +  Q+ EA E       + +K ++++E
Sbjct: 512 LELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQLHEANE-------ELQKKREQIE 564

Query: 598 EAEERADL 605
           E E   D 
Sbjct: 565 ELEPDQDQ 572

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 102/432 (23%), Positives = 180/432 (41%), Gaps = 68/432 (15%)

Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
            KLQ RLA+ E +    NQ      K    L +++E LQ E  R  A  +    K + ++
Sbjct: 217 EKLQERLAQLEGSSLGPNQLG---SKKYNLLQSQLEQLQEENFRLEAARDDYRIKCEELE 273

Query: 211 KIIGEWKLKVDDLAAELDASQ---------KECRNYSTELFRLKGAYEEAQEQLEAVRRE 261
           K + E + + D+L +    SQ         +E  + + +L      Y++  E L  +RR+
Sbjct: 274 KELAELQHRNDELTSLAAESQALKDEIDVLRESSDKAKKLEAQVETYKKKLEDLNDLRRQ 333

Query: 262 NKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQ-------------------- 301
            K L +     +    +    + +   AR +LE  K ++Q                    
Sbjct: 334 VKLLEERNAMYMQNTVQLEEELKKANAARGQLETYKRQVQELHAKLSEESKKADKLEFEY 393

Query: 302 AALEEAEAALEQEENKVLRAQLELSQANAEAQ-KNIKRYQQQLKDVQTALEEEQRARD-- 358
             LEE   AL++E+ ++L  +  L + N E +    ++ Q    D  T+   +  A +  
Sbjct: 394 KRLEEKLEALQKEKERLLAERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAELL 453

Query: 359 --DAREQLGIVERRANALQ--------NELEESRQLLEQADRGRRQAETELADAHEQLNE 408
             + RE+L  ++     L+          + E +QLLE A+R   + ET+L  A++++ E
Sbjct: 454 PSEYREKLIRLQHENKMLRLGQEGSENERITELQQLLEDANRRNNELETQLRLANQRILE 513

Query: 409 LSAQATSISAA--------------KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD 454
           L  Q   +  A              K KLE  L+ LH   +EL  + +  EE       +
Sbjct: 514 LQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQLHEANEELQKKREQIEELEPDQDQN 573

Query: 455 AARLADELRA-----EQDHAQTQEKLRKALE---TQIKELQIRLDEAENNALKGGKKAIQ 506
            +R   EL A     ++D    +E+ +K +E     IK L  + + A        KK + 
Sbjct: 574 LSRKIAELEAALQKKDEDMRAMEERYKKYVEKAREVIKTLDPKQNPASPEIQL-LKKQLT 632

Query: 507 KLEQRVRELENE 518
           + ++R+R LE+E
Sbjct: 633 ERDKRIRHLESE 644

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 20/224 (8%)

Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
           ++  E   QA            +L  L S       +  +   + +K    A   A+   
Sbjct: 196 QKAAEYLRQAAQAGTTGSSSADDLADLLSKFRLDSWDKGSRFTRTEKVEQAATAAAEVPP 255

Query: 464 AEQDHAQTQEKLRKALETQIKELQIRLDEAENNA--LKGGKKAIQKLEQRVRELENELDG 521
           AE D   T+E   K  E +++ LQ ++DE E++   +    KA+    ++V E    +  
Sbjct: 256 AEMD---TEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQ 312

Query: 522 EQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ------- 574
           E       ++  +  +R ++ L     +   N  ++Q LV    +++    +Q       
Sbjct: 313 ENEEL---EEEYKIKKRTVELL----PDAENNVAKLQALVVASSERLLELAQQWEAHRTP 365

Query: 575 -IEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKG 617
            I+E   +   N  K  + Q++L+E ++  +  E+  S+++TK 
Sbjct: 366 LIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKE 409

This family consists of several eukaryotic proteins of unknown function. Length = 536

>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 102/479 (21%), Positives = 191/479 (39%), Gaps = 55/479 (11%)

Query: 166 SLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID------KIIGEWKLK 219
           +L+ +++  +K   +L   ++++  E  + NA  N   ++ K         K I E + +
Sbjct: 430 ALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEAR 489

Query: 220 VDDLAAELDASQ--KECRNYSTELFRLKGAYE-----EAQEQLEAVRRENKNLADEVKDL 272
           + DL A+    Q  + C    +       AY+       Q +L+A+ +E K L +E   L
Sbjct: 490 IKDLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAAL 549

Query: 273 LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAAL---------------EQEENK 317
             Q+    + +   E   + L  E+  L    +   A+L                QEE++
Sbjct: 550 RGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHE 609

Query: 318 ----VLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRA-----RDDAREQLGIVE 368
               +L  + EL    A   + I +YQQQ++  Q  L             +  E   +  
Sbjct: 610 RQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLAT 669

Query: 369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK-RKLEGEL 427
           R+  A   +  + RQ    A + R Q  T L +   Q ++L     +++    R++  + 
Sbjct: 670 RQQEA---QSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQC 726

Query: 428 QTLHSDLDELLNEAKNSEEKAKKAMVD-AARLADELRAEQD---HAQTQEKLRKALETQI 483
            +LHS L  L  +     ++ +KA       L   +  +Q     A   E+    LE   
Sbjct: 727 LSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLK 786

Query: 484 KELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ--KNLRKTERRIK 541
           + L+ +  +A+    +  +   Q  + R   L+  +  EQ +   AQ  + LR+   R  
Sbjct: 787 QNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQG 846

Query: 542 ELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL----NLAKFRKAQQEL 596
           E+  Q ++D  N ++ Q L+    Q+I    +Q+E+   + +L       KFRK  Q L
Sbjct: 847 EIRQQLKQDADNRQQQQALM----QQIAQATQQVEDWGYLNSLIGSKEGDKFRKFAQGL 901

Length = 1047

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 52/264 (19%), Positives = 123/264 (46%), Gaps = 10/264 (3%)

Query: 461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
           EL+  ++     E   + LE ++K L+  L   E+  L+  ++ +++LE+++ EL+ EL 
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL-LEELRRQLEELERQLEELKRELA 726

Query: 521 GEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEE 580
             +      Q  L + E  ++EL  + EE ++  E +++ ++ L++ +   K +IEE EE
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786

Query: 581 IAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQIT 640
                  +  + ++ELEEAE R D  E+ +  +  +   + +    L+         +  
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE------IEEL 840

Query: 641 VQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKK---KLEADI 697
            +   +L   L  LE+E E  ++  +      +   +   + + E   +++   +LE+++
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900

Query: 698 NELEIALDHANKVRVAAISRKKYV 721
            EL+  ++   +      ++ + +
Sbjct: 901 AELKEEIEKLRERLEELEAKLERL 924

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 97/497 (19%), Positives = 191/497 (38%), Gaps = 68/497 (13%)

Query: 15  RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 74
             L+  +AE E   E L ++V  L +  + L  E +DL  E    +A A A E + + ++
Sbjct: 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320

Query: 75  KIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPF 134
               E  L+  L+     A A    AE   +  D +    +                   
Sbjct: 321 DRDEE--LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE--------------- 363

Query: 135 LNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDR 194
                            +L++ L EA E +E   +++  LE+  + L     D  +++  
Sbjct: 364 --------------EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409

Query: 195 ANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQ 254
           A                        +++L  E D  ++        L   +   EEA+  
Sbjct: 410 AED---------------------FLEELREERDELREREAELEATLRTARERVEEAEAL 448

Query: 255 LEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQE 314
           LEA +        E    ++ I E    + E+E   + LE E +E++  LE AE  +E E
Sbjct: 449 LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508

Query: 315 ------ENKVLRAQLELSQANA---EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
                 E +    +  +++      E ++  +  +++  +++   EE++ A  +A E+  
Sbjct: 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568

Query: 366 IVERRANALQNELEESRQLLEQADRGRRQAET--ELADAHEQLNELSAQATSISAAKRKL 423
                   L ++L E ++ +E  +R R       +  D  E+L E       ++  +R+ 
Sbjct: 569 EAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRER 628

Query: 424 EGELQTLHSDLDELLN-----EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
             E +    +L+   +     EA+  +E+A++ +       DELR E+D  Q +    + 
Sbjct: 629 LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688

Query: 479 LETQIKELQIRLDEAEN 495
              +++EL+ R +  EN
Sbjct: 689 ELEELEELRERREALEN 705

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 70/400 (17%), Positives = 156/400 (39%), Gaps = 35/400 (8%)

Query: 13   TKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKA 72
              R            ++ L +++  L++    L +E+  ++  +D  +   + A +K   
Sbjct: 661  APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720

Query: 73   IDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFI 132
            I+K I +      L+ E ++        E+   ++++ I    +K  L  +        I
Sbjct: 721  IEKEIEQ------LEQEEEKLKERLEELEEDLSSLEQEIEN--VKSELKELEAR-----I 767

Query: 133  PFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEV 192
              L E   K    L     +L      +   I  +  ++  LE+   R+   + +++ ++
Sbjct: 768  EELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821

Query: 193  DRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQ 252
            +R        EK+ + + +   + K ++  +  E++    +      EL       EE +
Sbjct: 822  NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL-------EELE 874

Query: 253  EQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALE 312
              L  +     +L  E  +L  Q+ E  R I E+E   ++      EL+A LE  E    
Sbjct: 875  AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE---- 930

Query: 313  QEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
             EE   +       +   E + +++  Q +L+ V+  +   +     A ++   V +R +
Sbjct: 931  -EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD 989

Query: 373  ALQNEL----EESRQLLEQADRGRRQAETELADAHEQLNE 408
             L+ +     EE + +LE+ +   ++      +A E +NE
Sbjct: 990  ELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINE 1029

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 15/249 (6%)

Query: 150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
           R  ++  LA A + +    Q++  L K  Q L T ++ L  +  +  A A + +   K +
Sbjct: 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177

Query: 210 DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEE---AQEQLEAVRRENKNLA 266
                + K +V DL       ++E +N +T     +   EE        +   +  +   
Sbjct: 178 QASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237

Query: 267 DEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAA------LEQEENKVLR 320
            ++     QI      I E E+  +RLE  +  L+  + + EA       L Q+     R
Sbjct: 238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQR 297

Query: 321 AQL------ELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANAL 374
            Q+       ++QA A+AQ   +      +     L    R     R       RR    
Sbjct: 298 GQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRRSPRRGRRQRPVTRHTTRRRRPA 357

Query: 375 QNELEESRQ 383
             +    R+
Sbjct: 358 TRQSPSGRE 366

Length = 499

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 49/266 (18%), Positives = 95/266 (35%), Gaps = 29/266 (10%)

Query: 373 ALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHS 432
           A   +L++ ++ +   ++  R+ + + A   +QL  L  +  S+ A   +   +L+ L  
Sbjct: 35  ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94

Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQ--------------DHAQTQEKLRKA 478
            + + LN   N+ E  ++      RLA++L A Q              + AQ   +L   
Sbjct: 95  QIAD-LNARLNALEVQERE--QRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIY 151

Query: 479 LETQIKELQIRLDEAENN--ALKGGKKAIQKLEQRVRELENELDGEQRRHADA----QKN 532
                     R+D  +     L   +  I   +  +  L +E   +Q + A      +K 
Sbjct: 152 YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKT 211

Query: 533 LRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKA 592
           L +    +     + EE R N  R+++ +   +          +  E  AA   A  R  
Sbjct: 212 LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA------KAREAAAAAEAAAARAR 265

Query: 593 QQELEEAEERADLAEQAVSKIRTKGG 618
             E +   E           I + GG
Sbjct: 266 AAEAKRTGETYKPTAPEKMLISSTGG 291

Length = 420

>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 160 AEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA---NAIANAAEKKAKAIDKIIGEW 216
           AE+  E L   V  +E+ K  +  +VE + +E+ R    NA+  A  K  + + + + + 
Sbjct: 75  AEKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYM-DL 133

Query: 217 KLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI 276
           K   ++L  +L+  QKE      EL  L+  YEE QE+L+ +  EN  L + +K L    
Sbjct: 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG-- 191

Query: 277 GEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEE 315
                   EV   +KR +  +  ++   EE  + L +E 
Sbjct: 192 --------EVYDLKKRWDELEPGVELPEEELISDLVKET 222

Length = 290

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 292 RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ---T 348
           +LE     LQ A+        +   +    Q EL Q   +      +  Q L        
Sbjct: 26  QLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQ---QELAINDQLSQALNQQTERLN 82

Query: 349 ALEEEQRARDDAREQLGIVERRA----NALQNELEESRQLLEQADRGRRQ-AETELADAH 403
           AL  + R   +   QL    R        L+  L  SR LL+Q           E  +  
Sbjct: 83  ALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVT 142

Query: 404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE 440
           ++ + L A+   I+A + + E     +   LD++L+ 
Sbjct: 143 QERDALQAEKAYINALEGQAEQLTAEVRDILDQILDT 179

Length = 835

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 56/292 (19%), Positives = 118/292 (40%), Gaps = 48/292 (16%)

Query: 249 EEAQEQLEAVR-RENKNLADEVKDLLDQIGEGGRNIHEVEKARKRL--EVEKDELQAALE 305
           E+ +E+L   R R+ ++L  ++ + LD++    R+        +    +V    L+  ++
Sbjct: 34  EDLKEELSNERLRKLRSLLTKLSEALDKL----RSYLPKLNPLREEKKKVSVKSLEELIK 89

Query: 306 EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQ-----TALEEEQRARDDA 360
           + E  LE+ E ++   + E+S+   E    IK  +Q+++ ++                  
Sbjct: 90  DVEEELEKIEKEIKELEEEISELENE----IKELEQEIERLEPWGNFDLDLSLLLGFKYV 145

Query: 361 REQLGIV-ERRANALQNELEESRQLLEQADRGRR------------QAETELADAHEQLN 407
              +G V E +   L+ E +         D+G              + E EL     +  
Sbjct: 146 SVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERL 205

Query: 408 ELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQD 467
           EL  + T  S   R+++ EL+ +  + + LL E K   +K  + ++    L + L  E +
Sbjct: 206 ELEEEGT-PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLA---LYEYLEIELE 261

Query: 468 HAQTQEKLRKALET----------QIKELQIRLDEAENNALKGGKKAIQKLE 509
            A+   K  K  +T          ++K+L+  +D+A       G   ++ +E
Sbjct: 262 RAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATG-----GSAYVEFVE 308

Length = 646

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 289 ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKN-IKRYQQQLKDVQ 347
           A +RLE +  +LQA L++A    E E    LR Q+ L  +   + K+ + + +++   +Q
Sbjct: 407 AIERLEQDIKKLQAELQQARQ-NESE----LRNQISLLTSLERSLKSDLGQLKKENDMLQ 461

Query: 348 TALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQ-L 406
           T L     A+   ++ +  +E+R  +  +    + + L +  + +++ E   A A  Q  
Sbjct: 462 TKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAA 521

Query: 407 NELSAQATSISAAKR-------KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
                 A S+  AK+       KLE +L+    +   L  EA+    K +++  +   L 
Sbjct: 522 ASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQEL-RKYQESEKETEVLM 580

Query: 460 DELRAEQDHAQTQEKLRKALETQIK 484
             L+A QD     E    A ET++K
Sbjct: 581 SALQAMQDKNLMLENSLSA-ETRLK 604

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 49/255 (19%), Positives = 94/255 (36%), Gaps = 34/255 (13%)

Query: 304 LEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQ 363
           L++ +  +   E K+   Q + ++     +K +K  + ++  ++  L E        R+Q
Sbjct: 40  LKQIQKEIAALEKKIREQQDQRAKL----EKQLKSLETEIASLEAQLIETADDLKKLRKQ 95

Query: 364 LGIVERRANALQNELEESRQLL----------------------EQADRGRRQAETELAD 401
           +  +  R NAL+ +  E R+ L                      E A R  R A    A 
Sbjct: 96  IADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGAL 155

Query: 402 AH---EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL 458
                E+++ L A    ++A + ++  E   L + L E   +     +  ++     A+L
Sbjct: 156 NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL 215

Query: 459 ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
             EL A+Q   +        L+ +I   +    +A   A      A +    R R  E +
Sbjct: 216 NSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA-----AAAEAAAARARAAEAK 270

Query: 519 LDGEQRRHADAQKNL 533
             GE  +    +K L
Sbjct: 271 RTGETYKPTAPEKML 285

Length = 420

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 70/345 (20%), Positives = 132/345 (38%), Gaps = 38/345 (11%)

Query: 188 LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGA 247
           LQ +++      N   KK  A++  + + + +++ L   L  S ++      +    + +
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSS 200

Query: 248 YEEAQEQLEAVRREN-------KNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDEL 300
            E    +  A+  +          L  +++ L  +  E  R +   +     LE  K EL
Sbjct: 201 SESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGEL 260

Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
           +  L++       EE + +  QLE  Q +             L+ +Q  LE  Q+     
Sbjct: 261 KQRLKKMTIQRRDEETERIDLQLENEQLHE-----------DLRTLQERLESSQQKAGLL 309

Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
            E+L  +    +    EL +SR  LE A    + ++  LA    Q           S   
Sbjct: 310 GEELASLGSLRDHTIAELHQSR--LESAQMSLQLSQLNLALKEGQ-----------SQWA 356

Query: 421 RKLEGELQTLHSDLDELLN---EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRK 477
           ++ E   Q+  +D D +     E    EE  ++      +L  EL  E+D  + Q    +
Sbjct: 357 QERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENR 416

Query: 478 ALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGE 522
              ++++   +R+ + E   L+  K   Q+L   +R LE  LD E
Sbjct: 417 RELSELRS-ALRVLQKEKEQLQEEK---QELLDYIRVLELRLDKE 457

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|235136 PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE-AQKNIKRYQQQLKD----VQT 348
           +      QA L+   A    EE    RA ++ +QA  + AQ    R QQ L         
Sbjct: 87  KANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNR-QQGLWKSRTISAN 145

Query: 349 ALEEEQRARDDAREQLGIVERRANALQN-----ELEESRQLLEQADRGRRQAETELADAH 403
            LE  + +RD A+  L   + + +  +      ++ +++  L QA     QAE  L D  
Sbjct: 146 DLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQDTE 205

Length = 331

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 40/256 (15%), Positives = 96/256 (37%), Gaps = 57/256 (22%)

Query: 304 LEEAEAALEQEENKVLRAQLELSQANA-----------EAQKNIKRYQQQLKDVQTALEE 352
            +E E  L + E+K+ +  + L                + ++ I   + ++K+V+  LE 
Sbjct: 33  CDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLES 92

Query: 353 EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAE-TELADAH---EQLNE 408
            ++  ++  E L           N L+E +  L++      +    ++   +    +  +
Sbjct: 93  LEKEINELEEWL-----------NVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLK 141

Query: 409 LSAQATSISAAK---------RKLEGELQTLHSDLDELLNEAKNS--------EEKAKKA 451
           L   A  I+  K         R   G ++   ++++E L + K +        +E   K 
Sbjct: 142 LGFVAGVINREKLEAFERELWRACRGYIRQ--AEIEEPLEDPKKTVFIIFFVGKEDLDK- 198

Query: 452 MVDAARLADELRAEQ----DHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQK 507
                ++ D    E     +    + +L   +  +I+ELQ  L++ E       +K + K
Sbjct: 199 ---VKKILDSFGFELYDVPETEGERSELISKVNKRIEELQRVLEQTE----SHLEKVLVK 251

Query: 508 LEQRVRELENELDGEQ 523
           +   +   + ++  E+
Sbjct: 252 IADELLAWDEQVSKEK 267

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 23/156 (14%)

Query: 148 FPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 207
             RR+LQ   A A  T+ ++  +V  L  T+  L T++E L+ + DRAN  A A      
Sbjct: 766 ANRRRLQQTNAAA--TLTNILTQVGTLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS 823

Query: 208 AIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD 267
               I         D+ A   A + +       L + + A   AQE L   +R N  LA+
Sbjct: 824 LETLI----NAGFTDIKAGQAALEAK---LDEILGKQQQALAAAQESLAIQQRTN-GLAE 875

Query: 268 EVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAA 303
                        R    +EK  K +E +   +++A
Sbjct: 876 -------------RQAAAIEKLAKAVEKQLSSIKSA 898

Length = 1634

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 62/325 (19%), Positives = 137/325 (42%), Gaps = 25/325 (7%)

Query: 297  KDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQK---NIKRYQQQLKDVQTALEEE 353
            +D       E      +E  K    + E ++   EA+K   + ++ ++  K       EE
Sbjct: 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE 1144

Query: 354  QRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQA 413
             R  +DA+ ++ I  +  +A + E     +  ++A+  R+  E   A+   +  +    A
Sbjct: 1145 ARKAEDAK-RVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAED----A 1199

Query: 414  TSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQE 473
                AA++  E          +    EA+ +E+  K    +A + A+E + + + A+  E
Sbjct: 1200 RKAEAARKAEE----------ERKAEEARKAEDAKK---AEAVKKAEEAKKDAEEAKKAE 1246

Query: 474  KLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQR----VRELENELDGEQRRHADA 529
            + R   E +  E       A   A    ++A +  E +     ++ +     E+++ AD 
Sbjct: 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE 1306

Query: 530  QKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF 589
             K   +  ++  E   +AEE +K  +  +   ++ ++  +  K + E A + A     K 
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366

Query: 590  RKAQQELEEAEERADLAEQAVSKIR 614
              A+++ EEA+++AD A++   + +
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKK 1391

Length = 2084

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 50/262 (19%), Positives = 91/262 (34%), Gaps = 30/262 (11%)

Query: 301 QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
           + A     A L+     V     EL++        +   Q+ L D       + R+   A
Sbjct: 737 ERARLRRIAELDARLAAVDDELAELARELRA----LGARQRALADELAGAPSD-RSLRAA 791

Query: 361 REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
             +    ER+A + + EL  + +    A    +QA  EL      L+ L     ++ A  
Sbjct: 792 HRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLD-LPTDPDALEAVG 850

Query: 421 RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARL----------ADELRAEQDHAQ 470
             L+     LH+ L+  + E +++  +A +    AAR           A E RAE + A 
Sbjct: 851 LALKRFGDHLHT-LEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEAS 909

Query: 471 -TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADA 529
                L +++   + E++ RL E         + A+    + +  L   L   +     A
Sbjct: 910 LRLRTLEESVGAMVDEIRARLAET--------RAALASGGRELPRLAEALATAEEARGRA 961

Query: 530 QKNLRKTERRIKELSFQAEEDR 551
                +          +  E R
Sbjct: 962 ----EEKRAEADATLDERAEAR 979

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 79/484 (16%), Positives = 173/484 (35%), Gaps = 64/484 (13%)

Query: 151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
           +     L   ++ I    +      K  +RL+ E  +   + +   +  N         +
Sbjct: 193 KSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKN 252

Query: 211 KIIGEWKLKVDDLAAELDASQK-----------------ECRNYSTELFRLKGAYEEAQE 253
           +   E K    DL+ EL+ +                   + RNY  + F+ K   E  ++
Sbjct: 253 RYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQ 312

Query: 254 QLEAVRRENKNLADEVKDL------LDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEA 307
            L  +  E       +K L       +   +      ++      LE  + +  + L+  
Sbjct: 313 ILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS- 371

Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
              +E  + K+      + + +A   + +K  +     ++  L E      D   ++  +
Sbjct: 372 ---IESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428

Query: 368 ERRANALQNELEESRQLL------------------EQADRGRRQAETELADAHEQLNEL 409
            +R  AL+  L+E  + +                  E+++        + +   E++ E+
Sbjct: 429 NQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREI 488

Query: 410 SAQATSISAAKRKLEGELQTLHS-DLDELLNE---AKNSEEKAKKAMVDAARLAD-ELRA 464
             +   I      L+   + L S ++++ +NE    +++    +   +    L D   + 
Sbjct: 489 EIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKY 548

Query: 465 EQDHAQTQ----EKLRKALETQIKEL-QIRLDEAENNALKGG--KKAIQKLEQRVRELEN 517
           E+   + +    E L     + +  L  I L + E N  +    KK +  LE R++E+E 
Sbjct: 549 EEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEI 608

Query: 518 ELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEE 577
                     D +  + K+ R I+  +          +  + L++KL+ KI  YK+QI E
Sbjct: 609 GFP-------DDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAE 661

Query: 578 AEEI 581
            + I
Sbjct: 662 IDSI 665

Length = 895

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 84/378 (22%), Positives = 167/378 (44%), Gaps = 35/378 (9%)

Query: 225 AELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIH 284
           AEL  S+ +      EL + +  ++ AQ +LE   R+   LA+  +  LD+  E    + 
Sbjct: 61  AELIRSKSKLIQLENELMQKELEHKRAQIELE---RKASTLAENYERELDRNLELEVRLK 117

Query: 285 EVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLK 344
            +E+  K+ E   +E   A EEA+   ++ + + L+ Q E      EA+++I R +    
Sbjct: 118 ALEELEKKAE---NEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKND-- 172

Query: 345 DVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHE 404
                L E Q    +A  +L         L++ELEE R+ LE+  +       ELA+A +
Sbjct: 173 -----LSEMQCRAQNADTEL-------KLLESELEELREQLEECQK-------ELAEAEK 213

Query: 405 QLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA 464
           +L  L+++  S +    K++   + L     +        E+  +  + +  R    LR 
Sbjct: 214 KLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQ--IPELERELAALRE 271

Query: 465 EQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQR 524
           E    ++ ++  + L+ ++++LQ RL+  E       ++ +  LE    +LENEL   + 
Sbjct: 272 ENRKLRSMKEDNELLKEELEDLQSRLERFE-----KMREKLADLELEKEKLENELKSWKS 326

Query: 525 RHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 584
              D   NLR  +   + +     E+ +  E+   +    +Q ++T  +Q++   + A  
Sbjct: 327 LLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQ-LETTLQQLQLERQKAVS 385

Query: 585 NLAKFRKAQQELEEAEER 602
            + + +K  + L+    R
Sbjct: 386 EILELKKKLEALKALVRR 403

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion protein

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 15/172 (8%)

Query: 451 AMVDAARLADELR-AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLE 509
           A +    L + L+ + Q   Q QE+L +     ++    RL E      +  K+A   LE
Sbjct: 87  ARLFQPELRERLQESYQKLTQLQEQLEE-----VRNYTGRLKEGRERHFQKSKEA---LE 138

Query: 510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
           + +  L  EL    R     +  L +     K      ++ R+  E+  D  DK +    
Sbjct: 139 ETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQQQWREEQEK-YDAADKARAIYA 197

Query: 570 TYKRQIEEAEE--IAALNLAKFR---KAQQELEEAEERADLAEQAVSKIRTK 616
              +  E   E  + +L+ A F+    A++ELE  E R   A   + ++  K
Sbjct: 198 LQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENK 249

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a leader peptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Leader Microcin, or NHLM. This family, therefore, is designated as NHLM bacteriocin system secretion protein. Some but not all NHLM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	721
KOG0161|consensus	1930		100.0
KOG0161|consensus	1930		100.0
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	100.0
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	100.0
KOG0933|consensus	1174		99.81
KOG4674|consensus	1822		99.79
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.76
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.75
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.73
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.72
PRK02224	880	chromosome segregation protein; Provisional	99.7
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.69
PRK02224	880	chromosome segregation protein; Provisional	99.68
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.66
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.66
KOG0964|consensus	1200		99.65
KOG4674|consensus	1822		99.64
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.64
KOG0996|consensus	1293		99.62
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.51
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.46
PRK03918	880	chromosome segregation protein; Provisional	99.45
PRK03918	880	chromosome segregation protein; Provisional	99.36
PRK01156	895	chromosome segregation protein; Provisional	99.06
KOG0996|consensus	1293		99.04
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	99.03
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	99.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.95
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.92
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.9
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.78
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.77
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.73
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.71
KOG4643|consensus	1195		98.68
KOG0977|consensus	546		98.68
KOG0977|consensus	546		98.66
KOG4643|consensus	1195		98.57
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.55
KOG0971|consensus	1243		98.53
KOG0976|consensus	1265		98.52
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.47
KOG0933|consensus	1174		98.45
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.34
PRK04778	569	septation ring formation regulator EzrA; Provision	98.26
PRK04778	569	septation ring formation regulator EzrA; Provision	98.19
KOG0976|consensus	1265		98.18
KOG0971|consensus	1243		98.12
KOG0964|consensus	1200		98.11
KOG0612|consensus	1317		98.05
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.01
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.98
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.98
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.89
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.82
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.79
KOG0612|consensus	1317		97.76
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.73
KOG0978|consensus	698		97.71
KOG0994|consensus	1758		97.65
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.6
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.53
PHA02562	562	46 endonuclease subunit; Provisional	97.51
KOG0994|consensus	1758		97.5
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.48
PRK04863	1486	mukB cell division protein MukB; Provisional	97.45
PRK11637	428	AmiB activator; Provisional	97.44
KOG0250|consensus	1074		97.42
KOG0250|consensus	1074		97.32
PRK04863	1486	mukB cell division protein MukB; Provisional	97.31
KOG0018|consensus	1141		97.28
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.27
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.21
PRK11637	428	AmiB activator; Provisional	97.21
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.19
KOG4673|consensus	961		97.19
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.17
KOG4673|consensus	961		97.11
PHA02562	562	46 endonuclease subunit; Provisional	97.11
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.06
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.06
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.03
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.03
KOG1003|consensus	205		96.99
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.89
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.74
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.69
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.67
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.62
PRK09039	343	hypothetical protein; Validated	96.62
KOG0995|consensus	581		96.6
KOG0995|consensus	581		96.49
PRK09039	343	hypothetical protein; Validated	96.41
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.36
KOG1003|consensus	205		96.24
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.18
KOG0946|consensus	970		96.06
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.02
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.97
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.85
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.78
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	95.76
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.7
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.65
KOG1029|consensus	1118		95.57
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.51
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.4
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.36
KOG0978|consensus	698		95.33
KOG0018|consensus	1141		95.08
KOG0980|consensus	980		94.68
KOG0963|consensus	629		94.59
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.43
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.15
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.08
COG4372	499	Uncharacterized protein conserved in bacteria with	94.05
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	93.51
KOG4593|consensus	716		93.25
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.96
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.84
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	92.8
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.72
KOG0962|consensus	1294		92.62
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	92.45
KOG0980|consensus	980		92.21
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.1
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.88
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	91.54
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.2
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.15
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	90.31
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.29
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.93
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.3
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.95
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.77
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.76
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	88.64
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.58
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.48
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	88.32
COG4372	499	Uncharacterized protein conserved in bacteria with	88.12
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	87.78
KOG0963|consensus	629		87.25
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	87.18
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	86.01
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	85.97
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.78
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	85.48
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.46
KOG1853|consensus	333		85.23
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	85.18
COG5185	622	HEC1 Protein involved in chromosome segregation, i	84.67
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.17
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.79
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	83.13
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.91
KOG0249|consensus	916		82.52
KOG0962|consensus	1294		82.23
COG4477	570	EzrA Negative regulator of septation ring formatio	82.19
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.33
PF13514	1111	AAA_27: AAA domain	80.51
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	80.47
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	80.36
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	80.02
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	80.01

>KOG0161|consensus

Probab=100.00  E-value=7.3e-35  Score=343.17  Aligned_cols=680  Identities=26%  Similarity=0.340  Sum_probs=576.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          11 LKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEV   90 (721)
Q Consensus        11 ~~~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~   90 (721)
                      ....++....|..+...+++....+.++..++...+..+..+..++..+...++.|.+..+.++..+.+  ...+++.+.
T Consensus       928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~--l~~~l~~~e 1005 (1930)
T KOG0161|consen  928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRE--LQDDLQAEE 1005 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            355778889999999999999999999999999999999999999999999999999999999999887  556789999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhh----------cCCCccchhhHHHHHHHHHH
Q psy4651          91 DRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSL----------KHPYPLFFPRRKLQARLAEA  160 (721)
Q Consensus        91 ~~~~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~----------~~~~~le~~~k~l~~~l~~l  160 (721)
                      ++++.+.+...+++..++.++..+.-++..    +.+++..+++++.++.          .....+....++...++..+
T Consensus      1006 ek~~~l~k~~~kle~~l~~le~~le~e~~~----r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l 1081 (1930)
T KOG0161|consen 1006 EKAKSLNKAKAKLEQQLDDLEVTLEREKRI----RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQL 1081 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888766322221    1256666666666553          23344555555666677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4651         161 EETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTE  240 (721)
Q Consensus       161 ~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e  240 (721)
                      ...++.....+..+++.+..++..|.++..+++.....++.+++..+.+..++.+++..+++..........--...+.+
T Consensus      1082 ~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e 1161 (1930)
T KOG0161|consen 1082 QSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAE 1161 (1930)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            88888888888899999999999999999999999999999999999999999999999998855443333333668899


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         241 LFRLKGAYEEAQEQLEAVR-RENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVL  319 (721)
Q Consensus       241 ~~~l~~ele~~~~~~e~~~-~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~  319 (721)
                      +..++..++.....++... .....+...+..+..++++.......+.+.+..+..++..+..+++.+.......+..+.
T Consensus      1162 ~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k 1241 (1930)
T KOG0161|consen 1162 VQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDK 1241 (1930)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence            9999999999988887654 467888889999999999777777777777777777777777777766665555555555


Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy4651         320 RAQLELSQ---ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGR----  392 (721)
Q Consensus       320 ~~~~~l~~---~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~----  392 (721)
                      .++..+..   -..++...+..+-.+...++.++.+..+...+.+.....+.+....+..+++.++.+++...+.+    
T Consensus      1242 ~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~ 1321 (1930)
T KOG0161|consen 1242 KLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALE 1321 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544333   23344444555556666677777777777777777777778888888888888888888766544    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         393 ---RQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE-AKNSEEKAKKAMVDAARLADELRAEQDH  468 (721)
Q Consensus       393 ---~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~-~~~~e~~~~~l~~e~~~l~~~l~~~~~~  468 (721)
                         ++++.+++.++.++++.......+...+.+...++..|+.+++..... .+.+++..+.+...+..+...+......
T Consensus      1322 ~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~ 1401 (1930)
T KOG0161|consen 1322 NALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAK 1401 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence               788888999999999999999999999999999999999999965554 8889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         469 AQTQEKLRKALETQIKELQIRLDEAENNAL------KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKE  542 (721)
Q Consensus       469 ~~~le~~k~~Le~e~~~L~~~l~~~e~~~~------~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~e  542 (721)
                      +..+++.+.+|..++.++...++.......      +.+++.+..|......+..+++......+...+.+.++...+.+
T Consensus      1402 ~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1402 NASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999999876644332      46888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy4651         543 LSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVAR  622 (721)
Q Consensus       543 l~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~~~~  622 (721)
                      +..+++.+.+.+..+...+..+...+..+.+.+++++.....+...+.+++..+.+++..+...++..  ++.+      
T Consensus      1482 ~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~--lr~~------ 1553 (1930)
T KOG0161|consen 1482 LLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKK--LRLQ------ 1553 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHH------
Confidence            99999999999999999999999999999999999999999999999999999999999999998888  7766      


Q ss_pred             CCCcccchhhhhhhhhHHHHHHHHHhhhhhhchHHHHHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4651         623 GSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEI  702 (721)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~  702 (721)
                          +++       .+.+.++++    +|..++++++..++++++.|.+|++.++.+.++++.+.++|++|+++|++|+.
T Consensus      1554 ----~~~-------~~~r~e~er----~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~ 1618 (1930)
T KOG0161|consen 1554 ----LEL-------QQLRSEIER----RLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEI 1618 (1930)
T ss_pred             ----HHH-------HHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHH
Confidence                555       367777665    49999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHhHHHHHhhcc
Q psy4651         703 ALDHANKVRVAAISRKK  719 (721)
Q Consensus       703 ~l~~~~~~~~~~~~~~~  719 (721)
                      +|+|||+++.++++..+
T Consensus      1619 ~ld~ank~~~d~~K~lk 1635 (1930)
T KOG0161|consen 1619 QLDHANKANEDAQKQLK 1635 (1930)
T ss_pred             HHHHHHHhhHHHHHHHH
Confidence            99999999999999764

>KOG0161|consensus

Probab=100.00  E-value=3.2e-32  Score=321.06  Aligned_cols=607  Identities=52%  Similarity=0.691  Sum_probs=546.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRA   93 (721)
Q Consensus        14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~~~   93 (721)
                      .+.++..+.++...+......+..+......+..++..+...+++....+..+.+....|..++..  .+..+..+....
T Consensus      1240 ~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~--~k~qle~e~r~k 1317 (1930)
T KOG0161|consen 1240 DKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEE--LKRQLEEETREK 1317 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            455666666667777777666666667777788888888888888888888888888888888887  344555555555


Q ss_pred             HHHHHHHHHHHHHHhHHHhHH--------HhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHH
Q psy4651          94 NAIANAAEKKAKAIDKIIGEW--------KLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIE  165 (721)
Q Consensus        94 ~~l~~~~~~~~~~~~~l~~~~--------~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le  165 (721)
                      ..+..++..+..+++.+...+        .+...+..... ++..|+.+++.......+.+++.++.+...+..+++.++
T Consensus      1318 ~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~-e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1318 SALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA-ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            555555555555555443221        35556666666 799999999987777789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4651         166 SLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLK  245 (721)
Q Consensus       166 ~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~  245 (721)
                      .+...+..+++.+..++.++.++..+++........++++.+.++..+.+|+...+.+..+++.++.+.+.+..++.++.
T Consensus      1397 ~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~ 1476 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLK 1476 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLEL  325 (721)
Q Consensus       246 ~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l  325 (721)
                      ..++.....++.+....+.+..++.++..++.+..+.+..+++.++.++.++.+++..+++++..+...+....++++++
T Consensus      1477 ~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~ 1556 (1930)
T KOG0161|consen 1477 NALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLEL 1556 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988887776666654


Q ss_pred             HH-------------------------------------------------------------------HHHHHHHHHHH
Q psy4651         326 SQ-------------------------------------------------------------------ANAEAQKNIKR  338 (721)
Q Consensus       326 ~~-------------------------------------------------------------------~~~~~~~~~~~  338 (721)
                      .+                                                                   ...++.++++.
T Consensus      1557 ~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk 1636 (1930)
T KOG0161|consen 1557 QQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKK 1636 (1930)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHh
Confidence            33                                                                   34456677778


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651         339 YQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISA  418 (721)
Q Consensus       339 l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~  418 (721)
                      ++.++.+++..++++.+...++......+++++..+.+++++++..++.+.+.++.++.++.++.+.+.......+.+..
T Consensus      1637 ~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~ 1716 (1930)
T KOG0161|consen 1637 LQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTA 1716 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhh
Confidence            88888888888888888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy4651         419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL  498 (721)
Q Consensus       419 ~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~  498 (721)
                      ..++++.+|..+...+++.......+.+..+++..+...+..++...++....++..+..|+..+.+|+.+|++++....
T Consensus      1717 ~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~ 1796 (1930)
T KOG0161|consen 1717 EKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAAL 1796 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651         499 KGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA  578 (721)
Q Consensus       499 ~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~  578 (721)
                      +.+...|..|+.+|.+|+.+|+...+......+.+++.++.+.++..++++-++....+++.++.++..+..+++++++.
T Consensus      1797 ~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleea 1876 (1930)
T KOG0161|consen 1797 KGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEA 1876 (1930)
T ss_pred             hccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy4651         579 EEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARG  623 (721)
Q Consensus       579 ~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~~~~~  623 (721)
                      +.....+...++.+++.++++.+....+++.+..|+..+..|+..
T Consensus      1877 E~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r~~~~~ 1921 (1930)
T KOG0161|consen 1877 EEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKLRSTGTK 1921 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999999999999999999999998766544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=100.00  E-value=1.2e-38  Score=365.57  Aligned_cols=602  Identities=50%  Similarity=0.693  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          12 KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVD   91 (721)
Q Consensus        12 ~~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~   91 (721)
                      +.++.++..+.++...++.....+..+...+..+..++..|...+.+....+..+.+....|..++.+  .+..|..+..
T Consensus       180 k~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee--lk~~leeEtr  257 (859)
T PF01576_consen  180 KKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE--LKRQLEEETR  257 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHhHhh
Confidence            44677777777777778888888888888888888888888888888888888888888888877776  3334444444


Q ss_pred             HHHHHHHHHHHHHHHHhHHHh--------HHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHH
Q psy4651          92 RANAIANAAEKKAKAIDKIIG--------EWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEET  163 (721)
Q Consensus        92 ~~~~l~~~~~~~~~~~~~l~~--------~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~  163 (721)
                      ....+...+..+..+++.+..        ...+...+..++. ++..|+.+|+.+.......++..++++...+.++...
T Consensus       258 ~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~-El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~  336 (859)
T PF01576_consen  258 AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNA-ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQ  336 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555554432        1245566666666 7999999999877777889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4651         164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFR  243 (721)
Q Consensus       164 le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~  243 (721)
                      ++.....+..|++.+.+|.++++++...++........++++.+.|+..+.+|+..+..+...++.++.+.+.+..++..
T Consensus       337 le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~  416 (859)
T PF01576_consen  337 LEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFK  416 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         244 LKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQL  323 (721)
Q Consensus       244 l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~  323 (721)
                      ++..++.....++.+...+..|..++.++..++++....+..|.+.+..|+.++.+++..++++++.+...+..+.++++
T Consensus       417 Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~  496 (859)
T PF01576_consen  417 LKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQV  496 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-------------------------------------------------------------------HHHHHHHHH
Q psy4651         324 ELSQ-------------------------------------------------------------------ANAEAQKNI  336 (721)
Q Consensus       324 ~l~~-------------------------------------------------------------------~~~~~~~~~  336 (721)
                      ++..                                                                   +..++.+.+
T Consensus       497 el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~  576 (859)
T PF01576_consen  497 ELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQL  576 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            8765                                                                   233345556


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651         337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI  416 (721)
Q Consensus       337 ~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l  416 (721)
                      +.+..++.+++..+++..+.++++...+..+++++..+..+++++...++.+.+.++.++.++.++...+..+......+
T Consensus       577 kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l  656 (859)
T PF01576_consen  577 KKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSL  656 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            66667777777777777777777777777788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4651         417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENN  496 (721)
Q Consensus       417 ~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~  496 (721)
                      ...++.++..|..+...+++.......+.+..+++..++..+..+|...++.+..+++.+..|+..|.+|+.+|+++++.
T Consensus       657 ~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~  736 (859)
T PF01576_consen  657 SEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQS  736 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4651         497 ALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIE  576 (721)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~le  576 (721)
                      ..+++...|..++.+|.+|+.+|+...+....+.+.+++++..++++..++++..+....+++.++.+...++.++++++
T Consensus       737 ~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~e  816 (859)
T PF01576_consen  737 ALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLE  816 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            98888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4651         577 EAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTK  616 (721)
Q Consensus       577 e~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~  616 (721)
                      +++.........++.+++.++++......++..+..||..
T Consensus       817 eaEe~~~~~~~k~Rk~q~elee~~e~~~~~e~~l~~lr~~  856 (859)
T PF01576_consen  817 EAEEEASRNLAKYRKLQRELEEAEERAEAAERELNKLRAK  856 (859)
T ss_dssp             --------------SSSSHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999876

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=100.00  E-value=8.8e-35  Score=333.70  Aligned_cols=551  Identities=30%  Similarity=0.399  Sum_probs=0.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         145 PLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLA  224 (721)
Q Consensus       145 ~le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~  224 (721)
                      .++...++...++..+...++.-...+..+.+.+..|+..|..|..+|+.....+...++..+.|..+|.++...+++..
T Consensus         8 ~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~   87 (859)
T PF01576_consen    8 ELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAG   87 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444455556666777778888888889999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy4651         225 AELDASQKEC-RNYSTELFRLKGAYEEAQEQLEAV-RRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQA  302 (721)
Q Consensus       225 ~~~~~~~~~~-~~le~e~~~l~~ele~~~~~~e~~-~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~  302 (721)
                      +.- .++.++ +..+.++.+|+.+|+.....++.. ...++.+...+.+|..+|+...+....+.+.+..+..++..+..
T Consensus        88 ~~t-~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~  166 (859)
T PF01576_consen   88 GAT-QAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQA  166 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            763 344444 678999999999999988888764 45678999999999999998888777888888888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4651         303 ALEEAEAALEQEENKVLRAQLELSQA---NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE  379 (721)
Q Consensus       303 ~le~~~~~l~~~e~~~~~~~~~l~~~---~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele  379 (721)
                      .++.+.......+..+..++.++...   ..+.++.+..+......+..+++++.+.+.+.......+.+....+..+++
T Consensus       167 ~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLe  246 (859)
T PF01576_consen  167 QLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLE  246 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776654433333333333333322   222333333444444444444444444444444444445555555666666


Q ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHH
Q psy4651         380 ESRQLLEQADRG-------RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE-AKNSEEKAKKA  451 (721)
Q Consensus       380 ~~~~~~~~~~~~-------~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~-~~~~e~~~~~l  451 (721)
                      +++..++...+.       .+.++.+++.+++.+++.......+...+..+..++..|+.+++..... .+.+++..+++
T Consensus       247 elk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL  326 (859)
T PF01576_consen  247 ELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKL  326 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            666666654443       3666677777777777777888889999999999999999999965444 78889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh------hcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         452 MVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNAL------KGGKKAIQKLEQRVRELENELDGEQRR  525 (721)
Q Consensus       452 ~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~------~~~~~~~~~~~~~~~~l~~ele~~~~~  525 (721)
                      ...+..+...+......+..|++.+.+|..++.|+...++...+...      ..|+..+..|...+..+...++.+...
T Consensus       327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e  406 (859)
T PF01576_consen  327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQRE  406 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999997765442      468889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         526 HADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADL  605 (721)
Q Consensus       526 ~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~  605 (721)
                      +..+.+.+..+...+.++...++.+.+.+..+..++..+...+......+++++.....|...+.++...+++++..+..
T Consensus       407 ~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~  486 (859)
T PF01576_consen  407 ARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEA  486 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCCcccchhhhhhhhhHHHHHHHHHhhhhhhchHHHHHhHhhHHHHHHHHHHhHHHHHhcHHH
Q psy4651         606 AEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAE  685 (721)
Q Consensus       606 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~~~~~~  685 (721)
                      .+..+  +|.+          ++++       +.+.+|++.    |.+++++|+..|+++++.|.+|+..|+.+++.++.
T Consensus       487 ~E~~~--lRl~----------~el~-------~~r~e~er~----l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~  543 (859)
T PF01576_consen  487 EEQKK--LRLQ----------VELQ-------QLRQEIERE----LQEKEEEFEETRRNHQRQLESLEAELEEERKERAE  543 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH--HHHH----------HHHH-------HHHHHHHHH----HHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence            99988  7777          6663       577776664    99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHhhcc
Q psy4651         686 ALRMKKKLEADINELEIALDHANKVRVAAISRKK  719 (721)
Q Consensus       686 ~~~~k~~le~~i~~l~~~l~~~~~~~~~~~~~~~  719 (721)
                      +.+.|++|+++|++|+.+|+|+|+++.++.+..+
T Consensus       544 ~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~k  577 (859)
T PF01576_consen  544 ALREKKKLESDLNELEIQLDHANRANEEAQKQLK  577 (859)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            9999999999999999999999999999988654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0933|consensus

Probab=99.81  E-value=8.5e-11  Score=128.73  Aligned_cols=130  Identities=17%  Similarity=0.090  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCCCCCcccchhhhhhhhhHHHHHHHHHh
Q psy4651         576 EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGG-------SVARGSSPLKLVCSVTFCRQITVQITSKLV  648 (721)
Q Consensus       576 ee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (721)
                      +.+..........+.++.+++..+...-..+...++.+..+++       -||.+|+.|+|.      ...+.+    ++
T Consensus       895 e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~------~~~p~~----ar  964 (1174)
T KOG0933|consen  895 EKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFE------SYDPHE----AR  964 (1174)
T ss_pred             HHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccc------cCCHhH----HH
Confidence            3344445555566778888888888888888888888888886       299999999994      566655    67


Q ss_pred             hhhhhchHHHHHhHhhHHHHHHHHHHhHHHHH----hcHHHHHHHHHHHHHHHHHHHH-HHhHHHHhHHHHH
Q psy4651         649 LHLFLLEEEFENTRKNHQRALDSMQASLEAEA----KGKAEALRMKKKLEADINELEI-ALDHANKVRVAAI  715 (721)
Q Consensus       649 ~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~----~~~~~~~~~k~~le~~i~~l~~-~l~~~~~~~~~~~  715 (721)
                      .+|..+++.++.+++++|+++++|.+..|..+    +.+..+...|.++-..|..|.. .-+..+++-....
T Consensus       965 e~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN 1036 (1174)
T KOG0933|consen  965 EELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVN 1036 (1174)
T ss_pred             HHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999998775    4677888999999999999987 5566777665543

>KOG4674|consensus

Probab=99.79  E-value=4.3e-10  Score=132.80  Aligned_cols=339  Identities=16%  Similarity=0.187  Sum_probs=187.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651         364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADA-------HEQLNELSAQATSISAAKRKLEGELQTLHSDLDE  436 (721)
Q Consensus       364 ~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l-------~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~  436 (721)
                      ...+.+.+..+..++..+......+......+..++...       +..|+...-....+...+.++..++..+..++..
T Consensus       999 ~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~ 1078 (1822)
T KOG4674|consen  999 LLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLK 1078 (1822)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555444433333333332       2222222222333444445555555555555544


Q ss_pred             HHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----cchhHHHHH
Q psy4651         437 LLNEAKNSE----EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK----GGKKAIQKL  508 (721)
Q Consensus       437 ~~~~~~~~e----~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~----~~~~~~~~~  508 (721)
                      ....++...    ...+.+...-..+..++.....++..|+..++-|...++.+.............    .....+..+
T Consensus      1079 Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~L 1158 (1822)
T KOG4674|consen 1079 LKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFL 1158 (1822)
T ss_pred             HHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH
Confidence            433333332    223344445556666777777788888888888888888877765531211111    134455556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHH
Q psy4651         509 EQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDR---------------------------KNHERMQDLV  561 (721)
Q Consensus       509 ~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~---------------------------~~~~~l~~~~  561 (721)
                      +....-+...++-+..+...+...+.-+...+.++...+...+                           ..+..+....
T Consensus      1159 R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1159 RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREEN 1238 (1822)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            6666666666666555555555555554444444444333332                           3344556666


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCCCcccchhhhhhhhh
Q psy4651         562 DKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGS---VARGSSPLKLVCSVTFCRQ  638 (721)
Q Consensus       562 ~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~  638 (721)
                      ......+..+...+..+...+..+...+..+...+......+..++.....|+....+   -.....+.+|.........
T Consensus      1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~ 1318 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISR 1318 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence            6666777777777777777777777777777777777777776666666666666432   0011111223211112223


Q ss_pred             HHHHHHHHHhhhhhhchHHHHHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy4651         639 ITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIA  703 (721)
Q Consensus       639 ~~~~~~~~~~~~l~~~~ee~e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~~  703 (721)
                      +...+.. ....++++...+..++..+...++.+.-....-.+.-..+...+.+|.....++..+
T Consensus      1319 Lk~el~~-ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1319 LKEELEE-KENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333221 234456666677777777777777777766666666677777777777777777776

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.76  E-value=4e-09  Score=131.02  Aligned_cols=31  Identities=16%  Similarity=0.093  Sum_probs=19.6

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy4651         678 AEAKGKAEALRMKKKLEADINELEIALDHAN  708 (721)
Q Consensus       678 ~e~~~~~~~~~~k~~le~~i~~l~~~l~~~~  708 (721)
                      .-..+..++..++..|+..|.++........
T Consensus       997 ~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168       997 ELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345666777777777777777666554443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.75  E-value=3.6e-09  Score=131.14  Aligned_cols=57  Identities=16%  Similarity=0.080  Sum_probs=37.7

Q ss_pred             HhhhhhhchHHHHHhHhhHHHHHHHHHHhH----HHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         647 LVLHLFLLEEEFENTRKNHQRALDSMQASL----EAEAKGKAEALRMKKKLEADINELEIAL  704 (721)
Q Consensus       647 ~~~~l~~~~ee~e~~rk~~~~~v~~l~~~l----e~e~~~~~~~~~~k~~le~~i~~l~~~l  704 (721)
                      +...+..+..++..+.. +|......++.+    +.-..+..++...+..|...|..|+..-
T Consensus       956 l~~~l~~l~~~i~~l~~-vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169       956 VQAELQRVEEEIRALEP-VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016 (1164)
T ss_pred             HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33446666666665544 665555555555    4445678889999999999998887654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.73  E-value=6e-09  Score=129.50  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         452 MVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ  487 (721)
Q Consensus       452 ~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~  487 (721)
                      ..++..+...+......+..++.....+...+..+.
T Consensus       809 ~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~  844 (1179)
T TIGR02168       809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLE  844 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.72  E-value=9.4e-09  Score=124.82  Aligned_cols=188  Identities=20%  Similarity=0.223  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651         507 KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNL  586 (721)
Q Consensus       507 ~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~  586 (721)
                      .+......+..++.........+...+..+...+..+...+......+..+...+..+...+..+.....++...+..+.
T Consensus       818 ~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~  897 (1163)
T COG1196         818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE  897 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444444444444444444445555555555555554444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCcccchhhhhhhhhHHHHHHHHHhhhhhhchHHHHHhHhhH
Q psy4651         587 AKFRKAQQELEEAEERADLAEQAVSKIRTKGGS-VARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNH  665 (721)
Q Consensus       587 ~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ee~e~~rk~~  665 (721)
                      ..+..+...+..+...+..+......+...++. ......++...        ....    ++..+..++.....+ ..|
T Consensus       898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~~i~~le~~i~~l-g~V  964 (1163)
T COG1196         898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT--------LETE----LEREIERLEEEIEAL-GPV  964 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--------hhHH----HHHHHHHHHHHHHhc-cCC
Confidence            444455544444444444443333333332221 00001111110        0002    334466666665555 367


Q ss_pred             HHHHHHHHHhHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4651         666 QRALDSMQASLEAEA----KGKAEALRMKKKLEADINELEIALDHA  707 (721)
Q Consensus       666 ~~~v~~l~~~le~e~----~~~~~~~~~k~~le~~i~~l~~~l~~~  707 (721)
                      |..+...++.+...+    ..+.++..++..|...|.++.......
T Consensus       965 N~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~ 1010 (1163)
T COG1196         965 NLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010 (1163)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888776655    477789999999999998888765443

>PRK02224 chromosome segregation protein; Provisional

Probab=99.70  E-value=4e-09  Score=126.00  Aligned_cols=119  Identities=18%  Similarity=0.252  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Q psy4651         374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMV  453 (721)
Q Consensus       374 l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~  453 (721)
                      +...++.....++........+..++..+...+.........+......+...+..+..++.........++ .+..+..
T Consensus       521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~  599 (880)
T PRK02224        521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLA  599 (880)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            333333333444444444445555555555444444433333333344444444444444444444444443 2444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         454 DAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEA  493 (721)
Q Consensus       454 e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~  493 (721)
                      ++..+...+......+..++.....+..++.++..+++.+
T Consensus       600 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444445555555555555543

>TIGR00606 rad50 rad50

Probab=99.69  E-value=2.5e-08  Score=122.70  Aligned_cols=95  Identities=22%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q psy4651         504 AIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRK----------NHERMQDLVDKLQQKIKTYKR  573 (721)
Q Consensus       504 ~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~----------~~~~l~~~~~~l~~~l~~~~~  573 (721)
                      .+..+...+..+...+.........+......+...+..++..+..+..          ....+...+..+...+..+..
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666666655444444444444444444444333332222          223344444444444444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         574 QIEEAEEIAALNLAKFRKAQQELEE  598 (721)
Q Consensus       574 ~lee~~~~~~~l~~~~~~l~~~l~e  598 (721)
                      .+.++...+..+...+..+...+.+
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~  927 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEE  927 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            4444444444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=99.68  E-value=8e-09  Score=123.40  Aligned_cols=130  Identities=18%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy4651         340 QQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAA  419 (721)
Q Consensus       340 ~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~  419 (721)
                      ..++..++..++++...++.....+.....++..+..++..+...+....+....+..+...+...+.++...+..+...
T Consensus       508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  587 (880)
T PRK02224        508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER  587 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555556666667777777777776666666777777777777777777777777776


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ  470 (721)
Q Consensus       420 ~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~  470 (721)
                      +..++ .+.++...+.........+...+..+......+...+...+.++.
T Consensus       588 ~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~  637 (880)
T PRK02224        588 IESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKR  637 (880)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666 466666666555555554444444444444444444444444333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.66  E-value=5.3e-08  Score=120.77  Aligned_cols=17  Identities=18%  Similarity=0.331  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHhH
Q psy4651         690 KKKLEADINELEIALDH  706 (721)
Q Consensus       690 k~~le~~i~~l~~~l~~  706 (721)
                      ...+...+..|...+..
T Consensus       995 ~~dl~~~~~~l~~~i~~ 1011 (1164)
T TIGR02169       995 RAKLEEERKAILERIEE 1011 (1164)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.66  E-value=3.7e-09  Score=118.55  Aligned_cols=264  Identities=17%  Similarity=0.250  Sum_probs=136.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcc------cchHHHHHHHHHHHHHHHHHH
Q psy4651         228 DASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGG------RNIHEVEKARKRLEVEKDELQ  301 (721)
Q Consensus       228 ~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~------~~~~~l~~~~~~le~e~~~l~  301 (721)
                      ..+..+...+..++..++..++.+...++.+.........++..|...|...+      ..-....+....++..+..+.
T Consensus       117 ~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le  196 (775)
T PF10174_consen  117 ERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLE  196 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHH
Confidence            33333444444455555555555555555555555555555555555443211      111122334444444444444


Q ss_pred             HHHHHHHHHHHHHHHHH-------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4651         302 AALEEAEAALEQEENKV-------------LRAQLEL---SQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG  365 (721)
Q Consensus       302 ~~le~~~~~l~~~e~~~-------------~~~~~~l---~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~  365 (721)
                      ..++..+.....+...+             ..++..+   ......+++.+..++.++..|+..++-....++.+...+.
T Consensus       197 ~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le  276 (775)
T PF10174_consen  197 SLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLE  276 (775)
T ss_pred             HHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence            44444433332110000             0111111   1234556666677777777777766644444555544443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651         366 IVERRANALQNELEESRQLLEQADRG-------RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL  438 (721)
Q Consensus       366 ~l~~~~~~l~~ele~~~~~~~~~~~~-------~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~  438 (721)
                      ........+...++.+...+......       ...+.....+++..|+-+.......+.....|..++..++.+|+...
T Consensus       277 ~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~  356 (775)
T PF10174_consen  277 VYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN  356 (775)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33333333444455555444433322       23334444445555555555556666666667777777777777766


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       439 ~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~  491 (721)
                      ..+......+..+..+...+..++....+.....+.....|...|+.|...+.
T Consensus       357 ~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~  409 (775)
T PF10174_consen  357 SQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR  409 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666665555544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0964|consensus

Probab=99.65  E-value=1.2e-08  Score=111.66  Aligned_cols=269  Identities=18%  Similarity=0.221  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          14 KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRA   93 (721)
Q Consensus        14 ~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~~~   93 (721)
                      -+-++....+...-+++..++...+...+..++..+..|..+-.++.. +..++++.+.+++.+.+        .++..+
T Consensus       165 trvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~-Yqkldk~rr~lEYtiYd--------rEl~E~  235 (1200)
T KOG0964|consen  165 TRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEK-YQKLDKERRSLEYTIYD--------RELNEI  235 (1200)
T ss_pred             cchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhHhhhhhhhhh--------hHHHHH
Confidence            356777888888899999999999999999999999999999999887 99999999999999987        454444


Q ss_pred             HHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          94 NAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIA  173 (721)
Q Consensus        94 ~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le~~~~~~~~  173 (721)
                      +.-.   ..+..........              ...+...++ ...+....+....+.+...+..+..+.+++......
T Consensus       236 ~~~l---~~le~~r~~~~e~--------------s~~~~~~~~-~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~  297 (1200)
T KOG0964|consen  236 NGEL---ERLEEDRSSAPEE--------------SEQYIDALD-KVEDESEDLKCEIKELENKLTNLREEKEQLKARETK  297 (1200)
T ss_pred             HHHH---HHHHHHHhccchh--------------hhhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4311   1121111111111              111111122 122233445555667777777777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy4651         174 LEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQE  253 (721)
Q Consensus       174 le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~  253 (721)
                      +-+.+..++..+.+++.++..-...+.........+...+.+....+....+....+..+...+...+..+.....++..
T Consensus       298 ~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~  377 (1200)
T KOG0964|consen  298 ISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLA  377 (1200)
T ss_pred             HHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999998888777777777777777777777777777776666666655555555655554444432


Q ss_pred             HHH------HHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         254 QLE------AVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA  309 (721)
Q Consensus       254 ~~e------~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~  309 (721)
                      ...      .......|+..++..+...+.+.......++..+..++.++...-..+..+..
T Consensus       378 Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~  439 (1200)
T KOG0964|consen  378 KQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELES  439 (1200)
T ss_pred             hhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            221      22345667777777776666666555555555555555444444444433333

>KOG4674|consensus

Probab=99.64  E-value=4.7e-08  Score=115.99  Aligned_cols=185  Identities=12%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         392 RRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT  471 (721)
Q Consensus       392 ~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~  471 (721)
                      ...|..++......+.++......+..++..+...+..|-.-....  ....+..-+..++.+..-+...+..+......
T Consensus      1101 ~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~--g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1101 EDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLL--GLSDLQNIVSFLRKEKEIAETKLDTLKRENAR 1178 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Confidence            4555566666666666655555555554444444333221111111  12333444444554444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhh------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         472 QEKLRKALETQIKELQIRLDEAENNALK------------GGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERR  539 (721)
Q Consensus       472 le~~k~~Le~e~~~L~~~l~~~e~~~~~------------~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~  539 (721)
                      |......+...+.+|+.-|.........            .....+.-+...-.-|..+++.....+.++...+.+++..
T Consensus      1179 L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~e 1258 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFE 1258 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445555555555555555432221100            0011122222222334444444444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651         540 IKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEA  578 (721)
Q Consensus       540 l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~  578 (721)
                      +..+...+.++...+......+..|......++.+..++
T Consensus      1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L 1297 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDL 1297 (1822)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444444444444444444444444443

>TIGR00606 rad50 rad50

Probab=99.64  E-value=8.8e-08  Score=117.94  Aligned_cols=53  Identities=15%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         151 RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAE  203 (721)
Q Consensus       151 k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e  203 (721)
                      ..+...+..+...+..+......+.+....++..+..+..++...........
T Consensus       573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~  625 (1311)
T TIGR00606       573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE  625 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555544444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0996|consensus

Probab=99.62  E-value=3.5e-08  Score=110.66  Aligned_cols=220  Identities=13%  Similarity=0.113  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH-HhhchhhhhchHhHHH
Q psy4651          52 LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEW-KLKGSLDFINTLYCLL  130 (721)
Q Consensus        52 l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~~~~~~l~~~~-~l~~~i~~~~~~e~~~  130 (721)
                      +......+...+..+.+++..++.....  .+..|.+-..+..++.+.+++....+..+.... .....|..++. ++..
T Consensus       375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk--~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~-ei~~  451 (1293)
T KOG0996|consen  375 IKERAKELKNKFESLKKKFQDLEREDVK--REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQT-EIEQ  451 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHH-HHHH
Confidence            3333344444445555566666655443  445677777777777777777777777665433 33444555544 5665


Q ss_pred             HhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         131 FIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID  210 (721)
Q Consensus       131 l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le  210 (721)
                      +...++.    ....++.....+........+++...+..+.+|........+++....++++.+........+....+.
T Consensus       452 L~~~~~~----~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk  527 (1293)
T KOG0996|consen  452 LEELLEK----EERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELK  527 (1293)
T ss_pred             HHHHHHH----HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443    445677778888888888999999999999999999999999999999999999888888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhh
Q psy4651         211 KIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGE  278 (721)
Q Consensus       211 ~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~  278 (721)
                      ..|......+.+....++.+...+..+..++......+..+......+......+...+.++...+..
T Consensus       528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~  595 (1293)
T KOG0996|consen  528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS  595 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777776666666666666666666666666666666666665555666666666666666665543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.51  E-value=8.7e-07  Score=107.91  Aligned_cols=62  Identities=19%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          16 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIG   78 (721)
Q Consensus        16 ~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~   78 (721)
                      .+.....+....++.....+..+...+..+...+..|..+...... +..+..+...++..+.
T Consensus       169 ~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~-y~~l~~e~~~~~~~~~  230 (1163)
T COG1196         169 KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQELKAELRELELALL  230 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3444444444445555555555555555555555555555444444 4455555555554443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.46  E-value=7.8e-07  Score=100.19  Aligned_cols=73  Identities=23%  Similarity=0.377  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         462 LRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK  535 (721)
Q Consensus       462 l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~  535 (721)
                      +...+..+..+......|+.++.+....+..+.....+ +-.........+..+...++....++..+...+.+
T Consensus       467 le~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~-l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k  539 (775)
T PF10174_consen  467 LETYQKELKELKAKLESLQKELSEKELQLEDAKEEASK-LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK  539 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH-HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33333444444444444555555444444433222211 11111223445566666666666666666555554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK03918 chromosome segregation protein; Provisional

Probab=99.45  E-value=2e-06  Score=103.13  Aligned_cols=14  Identities=29%  Similarity=0.693  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHh
Q psy4651         336 IKRYQQQLKDVQTA  349 (721)
Q Consensus       336 ~~~l~~~l~~l~~~  349 (721)
                      +..+..++..+..+
T Consensus       461 i~~l~~~~~~l~~~  474 (880)
T PRK03918        461 LKRIEKELKEIEEK  474 (880)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PRK03918 chromosome segregation protein; Provisional

Probab=99.36  E-value=7.2e-06  Score=98.43  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=7.7

Q ss_pred             HHHHHHHhHhHHHHHHHHHH
Q psy4651         255 LEAVRRENKNLADEVKDLLD  274 (721)
Q Consensus       255 ~e~~~~~~~~l~~e~~~l~~  274 (721)
                      +..+......+...+..+..
T Consensus       407 i~~l~~~~~~~~~~i~eL~~  426 (880)
T PRK03918        407 ISKITARIGELKKEIKELKK  426 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444443

>PRK01156 chromosome segregation protein; Provisional

Probab=99.06  E-value=0.00017  Score=86.61  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy4651         286 VEKARKRLEVEKDELQAALEE  306 (721)
Q Consensus       286 l~~~~~~le~e~~~l~~~le~  306 (721)
                      +...+..+...+..+...+.+
T Consensus       421 l~~~i~~l~~~i~~l~~~~~e  441 (895)
T PRK01156        421 ISSKVSSLNQRIRALRENLDE  441 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444443333333

>KOG0996|consensus

Probab=99.04  E-value=0.00012  Score=83.22  Aligned_cols=163  Identities=18%  Similarity=0.295  Sum_probs=71.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         146 LFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAA  225 (721)
Q Consensus       146 le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~  225 (721)
                      +++..+.+...+..+..+++.....+..++..-......+..++.+++.+.......+   +.++..+..+..+......
T Consensus       403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~---~~l~e~~~~l~~~t~~~~~  479 (1293)
T KOG0996|consen  403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEE---RELDEILDSLKQETEGIRE  479 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhHH
Confidence            3333444444444444444444444444444444444445555555444443332222   2233333344444444444


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         226 ELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALE  305 (721)
Q Consensus       226 ~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le  305 (721)
                      ++...+.++..+...+...+.++......+.-+..........+.+++..|................+...+..++.++.
T Consensus       480 e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~  559 (1293)
T KOG0996|consen  480 EIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK  559 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            44444444444444444555554444444444444444444444555554444333333333333444444444444444


Q ss_pred             HHHHHH
Q psy4651         306 EAEAAL  311 (721)
Q Consensus       306 ~~~~~l  311 (721)
                      +....+
T Consensus       560 ~~~k~l  565 (1293)
T KOG0996|consen  560 EKEKEL  565 (1293)
T ss_pred             HHHHhH
Confidence            444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=99.03  E-value=0.00027  Score=86.62  Aligned_cols=103  Identities=18%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy4651         504 AIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA  583 (721)
Q Consensus       504 ~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~  583 (721)
                      .+..+...+..+...+....    .....+.....-+...-.+..........+..++..+...+..+...+..+.....
T Consensus       772 ~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  847 (1201)
T PF12128_consen  772 RIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVK  847 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666665543    33334444555555555555555555555666666666555555555544443332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         584 LNLAKFRKAQQELEEAEERADLAEQAVSKI  613 (721)
Q Consensus       584 ~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l  613 (721)
                         ....++...+..+...+..+...+..+
T Consensus       848 ---~~~~~le~~~~~~~~~~~~~~~~l~~l  874 (1201)
T PF12128_consen  848 ---QRRKELEEELKALEEQLEQLEEQLRRL  874 (1201)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               233344444444444444444444333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=99.01  E-value=8.7e-05  Score=79.50  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=17.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4651         682 GKAEALRMKKKLEADINELEIALDHANK  709 (721)
Q Consensus       682 ~~~~~~~~k~~le~~i~~l~~~l~~~~~  709 (721)
                      .-.++...+.-|+..+..+..-|+....
T Consensus       733 KE~E~~s~k~sLE~ELs~lk~el~slK~  760 (786)
T PF05483_consen  733 KEQEQSSHKASLELELSNLKNELSSLKK  760 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4446666777777777666655555433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.95  E-value=0.00015  Score=77.78  Aligned_cols=44  Identities=30%  Similarity=0.410  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         154 QARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA  197 (721)
Q Consensus       154 ~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~  197 (721)
                      +..+.....+...+......|+.....++.++..+...+.....
T Consensus       142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e  185 (546)
T PF07888_consen  142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE  185 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.92  E-value=0.00024  Score=78.58  Aligned_cols=50  Identities=20%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANA  201 (721)
Q Consensus       152 ~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~  201 (721)
                      ..+.+|..++.++..+...+...+..+...-.+++..+.-++.+...+..
T Consensus        31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~   80 (522)
T PF05701_consen   31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK   80 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555566655555555555555555555555555444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.90  E-value=0.00021  Score=76.66  Aligned_cols=59  Identities=24%  Similarity=0.293  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         159 EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWK  217 (721)
Q Consensus       159 ~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~  217 (721)
                      -++..++...+....|.+....|+.++..+...++.+...+.........|.....++.
T Consensus       140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~  198 (546)
T PF07888_consen  140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT  198 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777677777777777777777766666666666555555444444444333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.78  E-value=0.00036  Score=72.71  Aligned_cols=253  Identities=23%  Similarity=0.308  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHH
Q psy4651         209 IDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK  288 (721)
Q Consensus       209 le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~  288 (721)
                      ++.++..++..+..+..       +...+..++..+..++.+....++........+..++..+...+++.......++.
T Consensus        52 ye~el~~lr~~id~~~~-------eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~  124 (312)
T PF00038_consen   52 YEEELRELRRQIDDLSK-------EKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN  124 (312)
T ss_dssp             HHHHHHCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhHHhhhhHHH-------HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence            44444444444444443       33445555566666666666666666666666666777776666655554445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHh
Q psy4651         289 ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELS-QANAEAQ-KNIKRYQQQLKDVQTALEEEQR-ARDDAREQLG  365 (721)
Q Consensus       289 ~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~-~~~~~~~-~~~~~l~~~l~~l~~~lee~~~-~~~~~~~~~~  365 (721)
                      ....|..++.-++..++.--..+          ...+. ....+.. .....|..-+.+++..|+.... .+.+++..+ 
T Consensus       125 ~i~~L~eEl~fl~~~heeEi~~L----------~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y-  193 (312)
T PF00038_consen  125 QIQSLKEELEFLKQNHEEEIEEL----------REQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWY-  193 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT----------STT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhh----------hhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhc-
Confidence            55555555554444333311111          11110 0000000 1123455566666666664332 333333322 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy4651         366 IVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE  445 (721)
Q Consensus       366 ~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e  445 (721)
                               ...+..+.............+..++..++..+..+...+..+......++..|.++...+.....   .+.
T Consensus       194 ---------~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~---~~~  261 (312)
T PF00038_consen  194 ---------QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE---EYQ  261 (312)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             ---------ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH---HHH
Confidence                     22333333333333333344445555555555555555555555566666666666665553322   233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         446 EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       446 ~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~  491 (721)
                      ..+..+..++..+...+.........|-..+-.|..+|.-...-|+
T Consensus       262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE  307 (312)
T PF00038_consen  262 AEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE  307 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            4455556666666666666666666677777778877776655443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.77  E-value=0.00024  Score=74.07  Aligned_cols=71  Identities=24%  Similarity=0.347  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651         365 GIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD  435 (721)
Q Consensus       365 ~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le  435 (721)
                      ..+.-.+..+..++++++..++.....+..++.++..++..++.....+..++..+..+..++.-++...+
T Consensus        71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he  141 (312)
T PF00038_consen   71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE  141 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence            33444445555666666666666666666666666776666666666666666666666555555544443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.73  E-value=2.5e-05  Score=77.21  Aligned_cols=54  Identities=19%  Similarity=0.391  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4651         528 DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEI  581 (721)
Q Consensus       528 ~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~  581 (721)
                      .+...+..|...+.++....+...+.+..+...+..+...+...+.....+...
T Consensus       173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e  226 (237)
T PF00261_consen  173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE  226 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555555555555555555555555555555444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.71  E-value=6.3e-05  Score=74.35  Aligned_cols=113  Identities=28%  Similarity=0.392  Sum_probs=54.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651         357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE  436 (721)
Q Consensus       357 ~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~  436 (721)
                      ..++...+....+++..+...++.....++.+......|+.++..+...+..+.............++..|..|..++..
T Consensus       108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke  187 (237)
T PF00261_consen  108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKE  187 (237)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444555555555544444444444444444555555555555555


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         437 LLNEAKNSEEKAKKAMVDAARLADELRAEQDHA  469 (721)
Q Consensus       437 ~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~  469 (721)
                      .....+.++..+..+...+..+...|...+...
T Consensus       188 aE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~  220 (237)
T PF00261_consen  188 AENRAEFAERRVKKLEKEIDRLEDELEKEKEKY  220 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4643|consensus

Probab=98.68  E-value=0.0015  Score=73.24  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651         377 ELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD  435 (721)
Q Consensus       377 ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le  435 (721)
                      ++++.-.+.-.+....+.|..+.+.|.+.+..+-.....++.--+.+..+...+.....
T Consensus       395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~  453 (1195)
T KOG4643|consen  395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS  453 (1195)
T ss_pred             hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445556666666666666666666555555555555555444444433

>KOG0977|consensus

Probab=98.68  E-value=0.0003  Score=75.47  Aligned_cols=89  Identities=12%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         530 QKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKI----KTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADL  605 (721)
Q Consensus       530 ~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l----~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~  605 (721)
                      ..++..+...+..+..++.+++..+..+...+..|...+    ..+...|++.+..+..+..+...+-.+++.+-+.-..
T Consensus       295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~  374 (546)
T KOG0977|consen  295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKIS  374 (546)
T ss_pred             HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhH
Confidence            344444455555555555555555555554444444332    3334445555555555555555555555555555556


Q ss_pred             HHHHHHHHHhccC
Q psy4651         606 AEQAVSKIRTKGG  618 (721)
Q Consensus       606 ~e~~~~~l~~~~~  618 (721)
                      +..++...|.-++
T Consensus       375 Ld~EI~~YRkLLe  387 (546)
T KOG0977|consen  375 LDAEIAAYRKLLE  387 (546)
T ss_pred             HHhHHHHHHHHhc
Confidence            6666655565554

>KOG0977|consensus

Probab=98.66  E-value=0.00036  Score=74.86  Aligned_cols=46  Identities=24%  Similarity=0.341  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE  492 (721)
Q Consensus       447 ~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~  492 (721)
                      .......++..+...+..++.++..++..+..|...|.+|..+++.
T Consensus       290 ~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e  335 (546)
T KOG0977|consen  290 EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE  335 (546)
T ss_pred             hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence            3444556666777777777788888888888888888888887774

>KOG4643|consensus

Probab=98.57  E-value=0.0031  Score=70.80  Aligned_cols=172  Identities=15%  Similarity=0.154  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q psy4651          13 TKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKV--------   84 (721)
Q Consensus        13 ~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~~~~~~--------   84 (721)
                      +.-.|...|+.+...+-.+++.+.+-......+..++..+..++..+......+....+.|..-..++..-.        
T Consensus       171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~  250 (1195)
T KOG4643|consen  171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDT  250 (1195)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCC
Confidence            345566677777777777777777666666667777777777776666666555554444443322211100        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHH
Q psy4651          85 SLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETI  164 (721)
Q Consensus        85 ~l~~e~~~~~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~l  164 (721)
                      .+..-+-...-+....+.+..+-.-+.+..      .-++. .+..++.+-+      ...++...-+++..+..+..+.
T Consensus       251 ~ykerlmDs~fykdRveelkedN~vLleek------eMLee-QLq~lrarse------~~tleseiiqlkqkl~dm~~er  317 (1195)
T KOG4643|consen  251 TYKERLMDSDFYKDRVEELKEDNRVLLEEK------EMLEE-QLQKLRARSE------GATLESEIIQLKQKLDDMRSER  317 (1195)
T ss_pred             ccchhhhhhHHHHHHHHHHHhhhHHHHHHH------HHHHH-HHHHHHhccc------cCChHHHHHHHHHHHHHHHHhh
Confidence            011111111111111111111111111110      00001 1222222221      1567777778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         165 ESLNQKVIALEKTKQRLATEVEDLQLEVDRANA  197 (721)
Q Consensus       165 e~~~~~~~~le~~~~~le~ei~~l~~~le~~~~  197 (721)
                      +..+.+.+.|..+...|+..-+.|....+.+..
T Consensus       318 dtdr~kteeL~eEnstLq~q~eqL~~~~ellq~  350 (1195)
T KOG4643|consen  318 DTDRHKTEELHEENSTLQVQKEQLDGQMELLQI  350 (1195)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Confidence            888888888888888887777777666665554

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.55  E-value=0.0072  Score=74.33  Aligned_cols=47  Identities=19%  Similarity=0.361  Sum_probs=23.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy4651         149 PRRKLQARLAEAEETIESLNQKVIALEKTKQRLAT-EVEDLQLEVDRA  195 (721)
Q Consensus       149 ~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~-ei~~l~~~le~~  195 (721)
                      ....+...+..+...+......+..++..+...+. .|..+...++.+
T Consensus       307 ~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l  354 (1201)
T PF12128_consen  307 LRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQL  354 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence            34444455555555555555555555555555543 344444444433

>KOG0971|consensus

Probab=98.53  E-value=0.0035  Score=69.38  Aligned_cols=160  Identities=22%  Similarity=0.296  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQ  322 (721)
Q Consensus       243 ~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~  322 (721)
                      .|..++...+.....+......+..++.++.+.++=.+-.++..+..-..|..++..++..+++++-.++.+.       
T Consensus       280 ~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK-------  352 (1243)
T KOG0971|consen  280 DLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK-------  352 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            3333333444444444444444455555555444432222223333334444444445555555444443321       


Q ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         323 LELSQ----ANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETE  398 (721)
Q Consensus       323 ~~l~~----~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~e  398 (721)
                      .++..    +-....-+.+.++.+...|+.-+=.++...........++.+++.....++.+++...+.+.+....++..
T Consensus       353 aEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~  432 (1243)
T KOG0971|consen  353 AEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAEST  432 (1243)
T ss_pred             HHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111    00111234566777776666655544444444455566778888888888888888888888888888888


Q ss_pred             HHHHHHHHHHH
Q psy4651         399 LADAHEQLNEL  409 (721)
Q Consensus       399 l~~l~~~l~~~  409 (721)
                      +.+++++++..
T Consensus       433 iadlkEQVDAA  443 (1243)
T KOG0971|consen  433 IADLKEQVDAA  443 (1243)
T ss_pred             HHHHHHHHHHh
Confidence            88888888753

>KOG0976|consensus

Probab=98.52  E-value=0.0032  Score=68.71  Aligned_cols=80  Identities=19%  Similarity=0.170  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         416 ISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN  495 (721)
Q Consensus       416 l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~  495 (721)
                      +.....++..++.+++..|-+.....+.+.+.+..+......+...+..++......+..+..|-.....++.+++.+..
T Consensus       321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555555555555555555555555554433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.47  E-value=0.005  Score=68.30  Aligned_cols=132  Identities=14%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy4651         420 KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALK  499 (721)
Q Consensus       420 ~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~  499 (721)
                      +..+..++...+..|+........+...+..+..++...+..+...+.+..........|..++..+...|..+..... 
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~-  361 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE-  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc-
Confidence            4444444444444444444444444444444444444444444444444444444444444455444444443221111 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         500 GGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRK  552 (721)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~  552 (721)
                      .....+..+...+..+..+.+...........++..+...+......+.....
T Consensus       362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~  414 (522)
T PF05701_consen  362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEE  414 (522)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122333444444444444444444444444444444444444443333333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0933|consensus

Probab=98.45  E-value=0.0064  Score=68.55  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651         508 LEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLA  587 (721)
Q Consensus       508 ~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~  587 (721)
                      -+..+..+.-+.+.+...+......+..+...+..+...+..+...+......+..+...+...+..+.+....+..+..
T Consensus       813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~  892 (1174)
T KOG0933|consen  813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT  892 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence            34445555666666666666666666666666666666666666666666666666666666666666666666655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         588 KFRKAQQELEEAEERADLAEQAVSKIR  614 (721)
Q Consensus       588 ~~~~l~~~l~e~e~~~~~~e~~~~~l~  614 (721)
                      ............+-.+..++..++.+.
T Consensus       893 ~~e~~~~e~~~~~l~~kkle~e~~~~~  919 (1174)
T KOG0933|consen  893 SQEKCLSEKSDGELERKKLEHEVTKLE  919 (1174)
T ss_pred             HHHHHHHHhhcccchHHHHHhHHHHhh
Confidence            555555555555555555555554443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.34  E-value=0.0081  Score=64.96  Aligned_cols=48  Identities=10%  Similarity=0.154  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          32 NQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGE   79 (721)
Q Consensus        32 ~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~   79 (721)
                      -.....+..|+-.++.++..-...+.+....+....+....|++....
T Consensus        84 ~~EaEKIk~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~  131 (786)
T PF05483_consen   84 YKEAEKIKKWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEK  131 (786)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            334445666777777777777777777777777777666666665554

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.26  E-value=0.017  Score=65.14  Aligned_cols=53  Identities=13%  Similarity=0.146  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy4651         388 ADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNE  440 (721)
Q Consensus       388 ~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~  440 (721)
                      +......+...++.|-+.++....+...+......+...+..+..........
T Consensus       280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E  332 (569)
T PRK04778        280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE  332 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555555555555555554444444444444444433333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.19  E-value=0.023  Score=64.15  Aligned_cols=90  Identities=8%  Similarity=0.012  Sum_probs=38.5

Q ss_pred             HHHHhhhhhhhhhcCCCccchhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         128 CLLFIPFLNEKSLKHPYPLFFPRRKLQARLA-----EAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAA  202 (721)
Q Consensus       128 ~~~l~~~le~~~~~~~~~le~~~k~l~~~l~-----~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~  202 (721)
                      +..|+..++.=.......++...-.....+.     .....+..+...++..+.....+...+.+|...-.........+
T Consensus        66 f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l  145 (569)
T PRK04778         66 FEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQL  145 (569)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666653122233333333333333222     22333444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4651         203 EKKAKAIDKIIGEWK  217 (721)
Q Consensus       203 e~~~~~le~~l~e~~  217 (721)
                      ....+.+...+.+..
T Consensus       146 ~~~y~~~rk~ll~~~  160 (569)
T PRK04778        146 KDLYRELRKSLLANR  160 (569)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            444444444444333

>KOG0976|consensus

Probab=98.18  E-value=0.019  Score=62.92  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         471 TQEKLRKALETQIKELQIRLDEA  493 (721)
Q Consensus       471 ~le~~k~~Le~e~~~L~~~l~~~  493 (721)
                      .|-..-..++.+++.+...+-.+
T Consensus       383 sL~~l~aerqeQidelKn~if~~  405 (1265)
T KOG0976|consen  383 SLLELQAERQEQIDELKNHIFRL  405 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh
Confidence            33333344555555555555433

>KOG0971|consensus

Probab=98.12  E-value=0.028  Score=62.59  Aligned_cols=116  Identities=20%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q psy4651         369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS-ISAAKRKLEGELQTLHSDLDELLNEAKNSEEK  447 (721)
Q Consensus       369 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~-l~~~~~~le~el~~lk~~le~~~~~~~~~e~~  447 (721)
                      .+...|+.+++.++.       ....|+.+++.|+..+++-...... -.-+.+.++.+...|+.-+-.+..........
T Consensus       325 ERaesLQ~eve~lkE-------r~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d  397 (1243)
T KOG0971|consen  325 ERAESLQQEVEALKE-------RVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQD  397 (1243)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            344445555555443       3345667788888777765433311 12244555555555555554443333322233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         448 AKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       448 ~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~  491 (721)
                      ..++..++.....++..+....+.|.+....++..|.+|+.+++
T Consensus       398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555

>KOG0964|consensus

Probab=98.11  E-value=0.033  Score=62.81  Aligned_cols=117  Identities=11%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy4651         160 AEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYST  239 (721)
Q Consensus       160 l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~  239 (721)
                      ....++.....+..+...+..++..+..|..+.+.+.......-++.-.|+-.+..++..+.........+...+..+..
T Consensus       256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~  335 (1200)
T KOG0964|consen  256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD  335 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence            33444555555556666666666666666666666655555555555555656666666555444444444444555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy4651         240 ELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQI  276 (721)
Q Consensus       240 e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l  276 (721)
                      .+..-..++....-.+..+...-..+...+..|....
T Consensus       336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~  372 (1200)
T KOG0964|consen  336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ  372 (1200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6666666666666666666555555555555555433

>KOG0612|consensus

Probab=98.05  E-value=0.052  Score=62.94  Aligned_cols=97  Identities=16%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEK  474 (721)
Q Consensus       395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~  474 (721)
                      ++.++..+...+.........+  .+..-+.++..+...+.+....+..++.....+..++..|...+...+.....+.+
T Consensus       672 ~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r  749 (1317)
T KOG0612|consen  672 LERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRR  749 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhh
Confidence            3333344444444433333333  22222666777777777777777777777788888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy4651         475 LRKALETQIKELQIRLDEA  493 (721)
Q Consensus       475 ~k~~Le~e~~~L~~~l~~~  493 (721)
                      ....+..++..|+..|+..
T Consensus       750 ~~~~~~~~vl~Lq~~LEqe  768 (1317)
T KOG0612|consen  750 SKDQLITEVLKLQSMLEQE  768 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888753

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=98.01  E-value=5.7e-05  Score=87.62  Aligned_cols=15  Identities=13%  Similarity=0.089  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHH
Q psy4651         596 LEEAEERADLAEQAV  610 (721)
Q Consensus       596 l~e~e~~~~~~e~~~  610 (721)
                      ++.+......+...+
T Consensus       568 l~~L~~En~~L~~~l  582 (722)
T PF05557_consen  568 LEALQAENEDLLARL  582 (722)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.98  E-value=0.054  Score=60.69  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         169 QKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK  207 (721)
Q Consensus       169 ~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~  207 (721)
                      .....|......+..++..|..+..........++..+.
T Consensus        22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~   60 (617)
T PF15070_consen   22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLS   60 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555554444444444444433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.98  E-value=3.5e-05  Score=89.41  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q psy4651         335 NIKRYQQQLKDVQTALEEEQ---RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELAD-------AHE  404 (721)
Q Consensus       335 ~~~~l~~~l~~l~~~lee~~---~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~-------l~~  404 (721)
                      ++..|+.++..|..-+....   ....++...+..+..+...+...+..+...+..+......|+.++..       +..
T Consensus       313 e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~  392 (722)
T PF05557_consen  313 ENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEA  392 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666655333321   11222333333333333334444444443333333333334333333       333


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651         405 QLNELSAQATSISAAKRKLEGELQTLHSDLDE  436 (721)
Q Consensus       405 ~l~~~~~~~~~l~~~~~~le~el~~lk~~le~  436 (721)
                      .+......+..++.++.-+..++..++..|..
T Consensus       393 ~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~s  424 (722)
T PF05557_consen  393 SLEALKKLIRRLERQKALATKERDYLRAQLKS  424 (722)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444445555555555553

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.89  E-value=0.041  Score=56.41  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         162 ETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWK  217 (721)
Q Consensus       162 ~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~  217 (721)
                      .+.-.+...+..+.+....+..+.+.+..++......+..++.-++.|+.....+.
T Consensus        36 ~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk   91 (309)
T PF09728_consen   36 EEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK   91 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555555555555555555555555555555555554444443333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.82  E-value=0.04  Score=54.11  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy4651         370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTL  430 (721)
Q Consensus       370 ~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~l  430 (721)
                      .++.+....+-+..++..+...-..|+.++-..++.|-+-.-....+.+.+.....++.++
T Consensus       138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~  198 (305)
T PF14915_consen  138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI  198 (305)
T ss_pred             hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555555555555554443333333333333333333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.79  E-value=4.9e-06  Score=96.13  Aligned_cols=29  Identities=17%  Similarity=0.226  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         377 ELEESRQLLEQADRGRRQAETELADAHEQ  405 (721)
Q Consensus       377 ele~~~~~~~~~~~~~~~l~~el~~l~~~  405 (721)
                      ++..+...+..+...+..+..+.+.+++.
T Consensus       392 e~~~L~ek~~~l~~eke~l~~e~~~L~e~  420 (713)
T PF05622_consen  392 ENKQLEEKLEALEEEKERLQEERDSLRET  420 (713)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0612|consensus

Probab=97.76  E-value=0.16  Score=59.22  Aligned_cols=23  Identities=17%  Similarity=0.083  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q psy4651         594 QELEEAEERADLAEQAVSKIRTK  616 (721)
Q Consensus       594 ~~l~e~e~~~~~~e~~~~~l~~~  616 (721)
                      .....+.+....++..+..|+..
T Consensus       714 ~ar~k~e~~~~~i~~e~e~L~~d  736 (1317)
T KOG0612|consen  714 SAREKAENLLLEIEAELEYLSND  736 (1317)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344444444455555555444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.73  E-value=0.056  Score=61.55  Aligned_cols=33  Identities=12%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         461 ELRAEQDHAQTQEKLRKALETQIKELQIRLDEA  493 (721)
Q Consensus       461 ~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~  493 (721)
                      .|...+..++.++.....-+.+|.+|..+|.++
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555666677777887777754

; GO: 0016021 integral to membrane

>KOG0978|consensus

Probab=97.71  E-value=0.14  Score=57.10  Aligned_cols=9  Identities=22%  Similarity=0.553  Sum_probs=3.7

Q ss_pred             HHHHHHHHH
Q psy4651          86 LQLEVDRAN   94 (721)
Q Consensus        86 l~~e~~~~~   94 (721)
                      ++-+++...
T Consensus       102 ~~~d~eki~  110 (698)
T KOG0978|consen  102 LQADLEKIR  110 (698)
T ss_pred             HHHHHHHHH
Confidence            444444433

>KOG0994|consensus

Probab=97.65  E-value=0.21  Score=57.50  Aligned_cols=24  Identities=8%  Similarity=0.070  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          54 LEVDRANAIANAAEKKAKAIDKII   77 (721)
Q Consensus        54 ~~l~~~~~~~~~l~~~~~~le~~~   77 (721)
                      ..++.++.....+....+.|...+
T Consensus      1267 ~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.60  E-value=0.032  Score=50.07  Aligned_cols=130  Identities=25%  Similarity=0.356  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         243 RLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQ  322 (721)
Q Consensus       243 ~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~  322 (721)
                      .++.+.+.+....+.+...++.+......+...|.       .|......++.++..+...+..+...+........   
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~-------sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~---   73 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEIT-------SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS---   73 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---
Confidence            34444445555555555445555555555444444       44444455555555555555554444433322111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQ  387 (721)
Q Consensus       323 ~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~  387 (721)
                           ....+.+.+..|+.++......|......+..+......+++.+..|..+.+.|...++.
T Consensus        74 -----~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee  133 (143)
T PF12718_consen   74 -----NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE  133 (143)
T ss_pred             -----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence                 112445555555665555555555555555555544455555555555555555544443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.53  E-value=0.2  Score=57.22  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=17.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE  601 (721)
Q Consensus       566 ~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~  601 (721)
                      .-+...+++++.+...+-.-+.++.+|...+.++..
T Consensus       622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444444555555555555543

; GO: 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.51  E-value=0.14  Score=58.18  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q psy4651         397 TELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSE  445 (721)
Q Consensus       397 ~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e  445 (721)
                      ..+..++..++.+......+..++..+...+..+...++.....+..+.
T Consensus       213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~  261 (562)
T PHA02562        213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLN  261 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            4455556666666655565666666666666555554444433333333

>KOG0994|consensus

Probab=97.50  E-value=0.33  Score=55.97  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=14.7

Q ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy4651         425 GELQTLHSDLDELLNEAKNSEEKAKKAMVDA  455 (721)
Q Consensus       425 ~el~~lk~~le~~~~~~~~~e~~~~~l~~e~  455 (721)
                      .+|..+..++.+....+...+..+......+
T Consensus      1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di 1541 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDI 1541 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhhhhhH
Confidence            3455555555555444444444444444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.48  E-value=0.3  Score=54.97  Aligned_cols=110  Identities=14%  Similarity=0.247  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHH
Q psy4651         506 QKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD---------KLQQKIKTYKRQIE  576 (721)
Q Consensus       506 ~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~---------~l~~~l~~~~~~le  576 (721)
                      +.+...+..+...++........+...+..+...-..++..+......+..+...+.         .+...+......+.
T Consensus       375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~  454 (560)
T PF06160_consen  375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIE  454 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            334444444555555544444444444444444444444444444444444333332         22233444444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4651         577 EAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRT  615 (721)
Q Consensus       577 e~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~  615 (721)
                      .+...++...-.+..+.+.+..+...+..+......+-.
T Consensus       455 ~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~  493 (560)
T PF06160_consen  455 ELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELID  493 (560)
T ss_pred             HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544455556666666666666666666654433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.45  E-value=0.62  Score=57.94  Aligned_cols=55  Identities=13%  Similarity=0.165  Sum_probs=23.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy4651         567 KIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVA  621 (721)
Q Consensus       567 ~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~~~~  621 (721)
                      .+..+......+..........+......+..+...+..+...+..+...+..+|
T Consensus       993 ~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863        993 RLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333333333333333333344444444444444444444444444444444444

>PRK11637 AmiB activator; Provisional

Probab=97.44  E-value=0.24  Score=53.93  Aligned_cols=41  Identities=24%  Similarity=0.282  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651         395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD  435 (721)
Q Consensus       395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le  435 (721)
                      ++..+..+...+.+.......|..........+..+.....
T Consensus       189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~  229 (428)
T PRK11637        189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQ  229 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

>KOG0250|consensus

Probab=97.42  E-value=0.43  Score=55.41  Aligned_cols=24  Identities=17%  Similarity=0.086  Sum_probs=11.6

Q ss_pred             hhchHHHHHhHhhHHHHHHHHHHh
Q psy4651         652 FLLEEEFENTRKNHQRALDSMQAS  675 (721)
Q Consensus       652 ~~~~ee~e~~rk~~~~~v~~l~~~  675 (721)
                      ..+...++..++.++....-.++.
T Consensus       926 ~~R~~~~qk~r~~~~~~~~~~F~~  949 (1074)
T KOG0250|consen  926 ESREQKYQKFRKLLTRRATEEFDA  949 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555554444443

>KOG0250|consensus

Probab=97.32  E-value=0.56  Score=54.50  Aligned_cols=132  Identities=16%  Similarity=0.280  Sum_probs=73.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy4651         146 LFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKII-GEWKLKVDDLA  224 (721)
Q Consensus       146 le~~~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l-~e~~~~~~~~~  224 (721)
                      ++.....+.........+++.+...+..+......++.++.+....+.........+++.+..+..+. ..+...+.+..
T Consensus       321 iea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e  400 (1074)
T KOG0250|consen  321 IEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERE  400 (1074)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            33334444445555555566666666666666666666666666666666666666666555555555 45555555555


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Q psy4651         225 AELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIG  277 (721)
Q Consensus       225 ~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~  277 (721)
                      ..+..+..++..++..+..|+.++.++.................+.++...+.
T Consensus       401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~  453 (1074)
T KOG0250|consen  401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE  453 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555556666655555555554444444444444444444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.31  E-value=0.89  Score=56.60  Aligned_cols=47  Identities=13%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         564 LQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAV  610 (721)
Q Consensus       564 l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~  610 (721)
                      +...+..-+.....+...+.....++..+...+......+......+
T Consensus      1065 l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I 1111 (1486)
T PRK04863       1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111 (1486)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444443333

>KOG0018|consensus

Probab=97.28  E-value=0.59  Score=53.99  Aligned_cols=43  Identities=19%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         162 ETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEK  204 (721)
Q Consensus       162 ~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~  204 (721)
                      ..+......+...+.........++.+..++..+.......++
T Consensus       303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fek  345 (1141)
T KOG0018|consen  303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEK  345 (1141)
T ss_pred             hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444455555555555555554444444433

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.27  E-value=0.23  Score=48.99  Aligned_cols=28  Identities=29%  Similarity=0.360  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4651         415 SISAAKRKLEGELQTLHSDLDELLNEAK  442 (721)
Q Consensus       415 ~l~~~~~~le~el~~lk~~le~~~~~~~  442 (721)
                      .++..+..++.+-..|+.+|+++....+
T Consensus       218 s~eERL~QlqsEN~LLrQQLddA~~K~~  245 (305)
T PF14915_consen  218 SLEERLSQLQSENMLLRQQLDDAHNKAD  245 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444455555554444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.21  E-value=0.28  Score=48.81  Aligned_cols=8  Identities=50%  Similarity=0.721  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q psy4651         484 KELQIRLD  491 (721)
Q Consensus       484 ~~L~~~l~  491 (721)
                      .+|...+.
T Consensus       141 ~~L~k~le  148 (294)
T COG1340         141 KELRKELE  148 (294)
T ss_pred             HHHHHHHH
Confidence            33333333

>PRK11637 AmiB activator; Provisional

Probab=97.21  E-value=0.48  Score=51.60  Aligned_cols=13  Identities=8%  Similarity=0.371  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q psy4651         370 RANALQNELEESR  382 (721)
Q Consensus       370 ~~~~l~~ele~~~  382 (721)
                      .+..+..++....
T Consensus        48 ~l~~l~~qi~~~~   60 (428)
T PRK11637         48 QLKSIQQDIAAKE   60 (428)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.19  E-value=0.16  Score=45.62  Aligned_cols=11  Identities=36%  Similarity=0.634  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q psy4651         397 TELADAHEQLN  407 (721)
Q Consensus       397 ~el~~l~~~l~  407 (721)
                      ..+..+...++
T Consensus        56 ~~l~~~k~~le   66 (143)
T PF12718_consen   56 EQLKEAKEKLE   66 (143)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4673|consensus

Probab=97.19  E-value=0.52  Score=51.44  Aligned_cols=46  Identities=22%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             HHHHhHhhHHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4651         657 EFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEI  702 (721)
Q Consensus       657 e~e~~rk~~~~~v~~l~~~le~e~~~~~~~~~~k~~le~~i~~l~~  702 (721)
                      ..+.++.+|+..+.-+=+..+.-...+-++.-.|..+-.+|++|-.
T Consensus       912 ~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~QIdeLl~  957 (961)
T KOG4673|consen  912 ELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQIDELLN  957 (961)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            4455666666665555555555566777888888888888888744

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.17  E-value=0.00013  Score=84.57  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy4651         374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATS  415 (721)
Q Consensus       374 l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~  415 (721)
                      +..++.++...+.........+..++..+.+.+..+......
T Consensus       368 ~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~  409 (713)
T PF05622_consen  368 YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKER  409 (713)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444445555555555555544444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4673|consensus

Probab=97.11  E-value=0.61  Score=50.91  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          13 TKRKLQARLAEAEETIESLNQKVIALEKTKQRLA   46 (721)
Q Consensus        13 ~~k~l~~~~~~l~~~le~~~~~~~~~~~~~~~~~   46 (721)
                      ...++...|..|.+.|+.-....-.....+.-+.
T Consensus       347 eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~le  380 (961)
T KOG4673|consen  347 ELDKTKKEIKMLNNALEAREAQLLADEIAKAMLE  380 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555566666666544444443333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.11  E-value=0.79  Score=52.13  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy4651         289 ARKRLEVEKDELQAALEEAEA  309 (721)
Q Consensus       289 ~~~~le~e~~~l~~~le~~~~  309 (721)
                      ....+...+..++.++..+..
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~  320 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDT  320 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.06  E-value=0.34  Score=47.08  Aligned_cols=8  Identities=38%  Similarity=0.488  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q psy4651         181 LATEVEDL  188 (721)
Q Consensus       181 le~ei~~l  188 (721)
                      +..++..+
T Consensus        36 ~~~e~e~~   43 (239)
T COG1579          36 AKAELEAL   43 (239)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.06  E-value=0.47  Score=48.72  Aligned_cols=67  Identities=18%  Similarity=0.279  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651         372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL  438 (721)
Q Consensus       372 ~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~  438 (721)
                      .....-+...+...+.+.+..+.++.+...++..++.....+..+.........++..++.+++...
T Consensus       233 ~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe  299 (309)
T PF09728_consen  233 NKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE  299 (309)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555555666666777777777777777666666666655556556665555554443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.03  E-value=0.27  Score=45.41  Aligned_cols=43  Identities=19%  Similarity=0.272  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy4651         339 YQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEES  381 (721)
Q Consensus       339 l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~  381 (721)
                      +..++.+|+.-+-.+......+..+.+.++++...|..+++.+
T Consensus        65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L  107 (193)
T PF14662_consen   65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL  107 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444333333344444444444444444444443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.03  E-value=0.87  Score=51.30  Aligned_cols=57  Identities=11%  Similarity=0.221  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKV  220 (721)
Q Consensus       164 le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~  220 (721)
                      +..+...++.++.....+..++.+|...=...+.....+....+.+...+......+
T Consensus       103 i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~  159 (560)
T PF06160_consen  103 IKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY  159 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            333444444444444444444444444333333333444444444444444444333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG1003|consensus

Probab=96.99  E-value=0.28  Score=45.06  Aligned_cols=133  Identities=23%  Similarity=0.342  Sum_probs=60.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651         359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL  438 (721)
Q Consensus       359 ~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~  438 (721)
                      .++.....++.++..+..++.+.+.-.+.+.+.+......|-.....|+........-+..+..+..++..+...+..+.
T Consensus        50 v~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~  129 (205)
T KOG1003|consen   50 VIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS  129 (205)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            33333334444444444455444444444444443333333333333333333333333333344444444444444333


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       439 ~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~  491 (721)
                      ..-+.+......+...+..+...|.....+-...++....|+..+++|...+.
T Consensus       130 ~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~  182 (205)
T KOG1003|consen  130 AKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE  182 (205)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence            33333333334444444445555555555555556666666666666655555

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.89  E-value=0.36  Score=44.57  Aligned_cols=29  Identities=14%  Similarity=0.177  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         455 AARLADELRAEQDHAQTQEKLRKALETQI  483 (721)
Q Consensus       455 ~~~l~~~l~~~~~~~~~le~~k~~Le~e~  483 (721)
                      +..+...+...+.-...+.-++..|+..+
T Consensus       160 i~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  160 IEELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444444443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.74  E-value=0.76  Score=46.19  Aligned_cols=127  Identities=20%  Similarity=0.279  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651         283 IHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDARE  362 (721)
Q Consensus       283 ~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~  362 (721)
                      ...|++..+.|+.+...++.+...+.......+..-..+=..+-..-..+..++..|...+..-...+...+.++..+..
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls  241 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS  241 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777888888877777777766543333322111111122222333334444444444444444444444444444


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         363 QLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL  409 (721)
Q Consensus       363 ~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~  409 (721)
                      ++..++.+++.+..+.+++...+.........|..++.++++++.+.
T Consensus       242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~  288 (306)
T PF04849_consen  242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC  288 (306)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555554444444444455555444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.69  E-value=1.7  Score=49.49  Aligned_cols=55  Identities=18%  Similarity=0.178  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651          25 EETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGE   79 (721)
Q Consensus        25 ~~~le~~~~~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~~le~~~~~   79 (721)
                      ...|.++...+..+...+.....+...|......+...+..++.++..+...+.+
T Consensus        33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke   87 (717)
T PF09730_consen   33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE   87 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444444444444444444444444444444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.67  E-value=0.7  Score=44.92  Aligned_cols=55  Identities=25%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4651         443 NSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNA  497 (721)
Q Consensus       443 ~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~  497 (721)
                      .....+.++..+++.+...+......+..++.....++.++.++..++...+...
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455556666666666677777777777777777778877777777654333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.62  E-value=0.45  Score=42.11  Aligned_cols=17  Identities=24%  Similarity=0.290  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy4651         291 KRLEVEKDELQAALEEA  307 (721)
Q Consensus       291 ~~le~e~~~l~~~le~~  307 (721)
                      ..|...+...+..++++
T Consensus        83 ~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   83 ENLDKELQKKQEKVSEL   99 (140)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK09039 hypothetical protein; Validated

Probab=96.62  E-value=1  Score=47.16  Aligned_cols=63  Identities=17%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         403 HEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE  465 (721)
Q Consensus       403 ~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~  465 (721)
                      ...|.......+.....+..+..+|..|+.++......++.++......+..+..+...+...
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444445555555555555444444444444445555555555544443

>KOG0995|consensus

Probab=96.60  E-value=1.4  Score=47.60  Aligned_cols=8  Identities=38%  Similarity=0.601  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q psy4651         163 TIESLNQK  170 (721)
Q Consensus       163 ~le~~~~~  170 (721)
                      +++.+...
T Consensus       236 ~ie~l~~~  243 (581)
T KOG0995|consen  236 EIEDLKKT  243 (581)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG0995|consensus

Probab=96.49  E-value=1.7  Score=47.08  Aligned_cols=31  Identities=19%  Similarity=0.412  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         284 HEVEKARKRLEVEKDELQAALEEAEAALEQE  314 (721)
Q Consensus       284 ~~l~~~~~~le~e~~~l~~~le~~~~~l~~~  314 (721)
                      .++......+++.+..++.+++..+.+++.+
T Consensus       283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l  313 (581)
T KOG0995|consen  283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL  313 (581)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555555555544443

>PRK09039 hypothetical protein; Validated

Probab=96.41  E-value=1.5  Score=45.83  Aligned_cols=30  Identities=10%  Similarity=0.100  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy4651         246 GAYEEAQEQLEAVRRENKNLADEVKDLLDQ  275 (721)
Q Consensus       246 ~ele~~~~~~e~~~~~~~~l~~e~~~l~~~  275 (721)
                      .++......+......+..|..+|..|+.+
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            333333333333333334444444444443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.36  E-value=0.67  Score=41.04  Aligned_cols=25  Identities=8%  Similarity=0.150  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         523 QRRHADAQKNLRKTERRIKELSFQA  547 (721)
Q Consensus       523 ~~~~~~~~~~~~~l~~~l~el~~~l  547 (721)
                      ......+...+..+++.+..+....
T Consensus        16 ~~e~dsle~~v~~LEreLe~~q~~~   40 (140)
T PF10473_consen   16 ESEKDSLEDHVESLERELEMSQENK   40 (140)
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHhH
Confidence            3333333333333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1003|consensus

Probab=96.24  E-value=0.97  Score=41.70  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         537 ERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK  572 (721)
Q Consensus       537 ~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~  572 (721)
                      ...+.+.....+...+.+..|...++.+...+...+
T Consensus       150 tdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k  185 (205)
T KOG1003|consen  150 TDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK  185 (205)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence            334444444444444444444444444444433333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=96.18  E-value=2.8  Score=46.50  Aligned_cols=74  Identities=12%  Similarity=0.124  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         394 QAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQD  467 (721)
Q Consensus       394 ~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~  467 (721)
                      .|..++...+.........+...+..++.+..-+..+..-+......++..-..+..+...+......+..++.
T Consensus       377 tLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqG  450 (739)
T PF07111_consen  377 TLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQG  450 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHH
Confidence            45555555555555555555555555554444444444444433333333333444444444444444444433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0946|consensus

Probab=96.06  E-value=3.5  Score=46.43  Aligned_cols=15  Identities=20%  Similarity=0.488  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHH
Q psy4651         477 KALETQIKELQIRLD  491 (721)
Q Consensus       477 ~~Le~e~~~L~~~l~  491 (721)
                      ..|..-+.+|..+..
T Consensus       928 ~alk~~l~dL~q~~e  942 (970)
T KOG0946|consen  928 QALKEALEDLNQPVE  942 (970)
T ss_pred             HHHHHHHHHhCCChh
Confidence            344444555554443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.02  E-value=1.9  Score=43.04  Aligned_cols=12  Identities=42%  Similarity=0.667  Sum_probs=4.7

Q ss_pred             hHHHHHHHHHHH
Q psy4651         283 IHEVEKARKRLE  294 (721)
Q Consensus       283 ~~~l~~~~~~le  294 (721)
                      +..+.+.+..|+
T Consensus       109 ~~~ler~i~~Le  120 (294)
T COG1340         109 IKSLEREIERLE  120 (294)
T ss_pred             HHHHHHHHHHHH
Confidence            333444443333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.97  E-value=2.1  Score=43.14  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         391 GRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ  470 (721)
Q Consensus       391 ~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~  470 (721)
                      ..+.|+.++..|+.....+.......+.+-..+   |.++-.++..+...+..+.+.+.....+......++..+.+.+.
T Consensus       168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv  244 (306)
T PF04849_consen  168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV  244 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433333333222222   22233333333333333333333333333333333333333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy4651         471 TQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       471 ~le~~k~~Le~e~~~L~~~l~  491 (721)
                      .+....+.+-.+.++|...|.
T Consensus       245 dlQ~r~k~~~~EnEeL~q~L~  265 (306)
T PF04849_consen  245 DLQQRCKQLAAENEELQQHLQ  265 (306)
T ss_pred             HHHHHHHHHhhhHHHHHHHHH
Confidence            444444444444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.85  E-value=1.6  Score=42.42  Aligned_cols=119  Identities=20%  Similarity=0.287  Sum_probs=63.7

Q ss_pred             HhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         261 ENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQ  340 (721)
Q Consensus       261 ~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~~e~~~~~~~~~l~~~~~~~~~~~~~l~  340 (721)
                      ....|..+...|...++       .+++.+..+..++.--..++.-+++.+..+                  .+++..|+
T Consensus        61 e~s~LkREnq~l~e~c~-------~lek~rqKlshdlq~Ke~qv~~lEgQl~s~------------------Kkqie~Le  115 (307)
T PF10481_consen   61 EYSALKRENQSLMESCE-------NLEKTRQKLSHDLQVKESQVNFLEGQLNSC------------------KKQIEKLE  115 (307)
T ss_pred             hhhhhhhhhhhHHHHHH-------HHHHHHHHhhHHHhhhHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence            33444444444444443       566666666666655555555555554433                  23456677


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHH---HhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         341 QQLKDVQTALEEEQRARDDAREQ---LGIVERRA--------NALQNELEESRQLLEQADRGRRQAETELADAHE  404 (721)
Q Consensus       341 ~~l~~l~~~lee~~~~~~~~~~~---~~~l~~~~--------~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~  404 (721)
                      +++..++.+|+..+.........   ....++-.        ......+++++..+......+++|+.++..|+.
T Consensus       116 qelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~  190 (307)
T PF10481_consen  116 QELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQA  190 (307)
T ss_pred             HHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            77777777777655544332211   11111111        122355666777777666677777777776663

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.78  E-value=1.8  Score=41.02  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy4651         369 RRANALQNELEESRQLLE  386 (721)
Q Consensus       369 ~~~~~l~~ele~~~~~~~  386 (721)
                      ..+..+..++..+...+.
T Consensus       171 ~~~~~l~~ei~~L~~klk  188 (194)
T PF15619_consen  171 EEVKSLQEEIQRLNQKLK  188 (194)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=95.76  E-value=3.2  Score=43.61  Aligned_cols=117  Identities=20%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         456 ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRK  535 (721)
Q Consensus       456 ~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~  535 (721)
                      ..|.......+.++..|...+-.|+..+++|+..+....     -+-..|.+++..+.+|-..--...=+..++.+.+..
T Consensus       320 ~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq-----vfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn  394 (527)
T PF15066_consen  320 QKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ-----VFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN  394 (527)
T ss_pred             HHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence            334444455556677778888888889998887766422     222357777777777776666666667788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy4651         536 TERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEE  577 (721)
Q Consensus       536 l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee  577 (721)
                      +...+...+.+|.+.+.+...++-++.++....-.++.+.-.
T Consensus       395 Lqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~  436 (527)
T PF15066_consen  395 LQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT  436 (527)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            888888888888888888888887777777766666554433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.70  E-value=4.8  Score=45.25  Aligned_cols=55  Identities=20%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         150 RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEK  204 (721)
Q Consensus       150 ~k~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~  204 (721)
                      ...-..++..++.+++.+...+..+...+..+...+..+..++.........++.
T Consensus       323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~  377 (594)
T PF05667_consen  323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE  377 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666666666666666655555555555555555554444444433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.65  E-value=5  Score=45.12  Aligned_cols=136  Identities=13%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         411 AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVD-------AARLADELRAEQDHAQTQEKLRKALETQI  483 (721)
Q Consensus       411 ~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e-------~~~l~~~l~~~~~~~~~le~~k~~Le~e~  483 (721)
                      ..+..|+..+......+..|..+++....   .+.+.++.+...       ......++..++..+..+..+...-+...
T Consensus       394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~  470 (594)
T PF05667_consen  394 ENIAKLQALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELY  470 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555554332   222233333222       22223333344444444444444444444


Q ss_pred             HHHHHHHHHHHHhH-hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         484 KELQIRLDEAENNA-LKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEE  549 (721)
Q Consensus       484 ~~L~~~l~~~e~~~-~~~~~~~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~  549 (721)
                      ..|...+..+.... +..+-.-|.++-+.+..-..+++..-.+.+.+++++..+...+.-.-.-.++
T Consensus       471 ~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE  537 (594)
T PF05667_consen  471 KQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE  537 (594)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            44444444322111 1233334555555566666666666666666666666655555444333333

>KOG1029|consensus

Probab=95.57  E-value=5.2  Score=44.74  Aligned_cols=6  Identities=33%  Similarity=-0.036  Sum_probs=2.2

Q ss_pred             HHHHHH
Q psy4651         545 FQAEED  550 (721)
Q Consensus       545 ~~l~~~  550 (721)
                      .+++++
T Consensus       549 dqldel  554 (1118)
T KOG1029|consen  549 DQLDEL  554 (1118)
T ss_pred             HHHHHH
Confidence            333333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.51  E-value=2.4  Score=40.47  Aligned_cols=110  Identities=15%  Similarity=0.193  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651         337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI  416 (721)
Q Consensus       337 ~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l  416 (721)
                      ...+.....|..++++.......+..-+..+++-+..+..+....   ..........+..+.+.+...+..+..+.+.+
T Consensus        19 ~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl   95 (207)
T PF05010_consen   19 AEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQAYADLNSLEKSFSDL   95 (207)
T ss_pred             HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHH
Confidence            334455566666666666655555555555555555444432222   22222334445555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q psy4651         417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK  449 (721)
Q Consensus       417 ~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~  449 (721)
                      .....++...+..++..-+.+...+......+.
T Consensus        96 ~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~  128 (207)
T PF05010_consen   96 HKRYEKQKEVIEGYKKNEETLKKCIEEYEERLK  128 (207)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            555555555555555544444333333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.40  E-value=2.5  Score=40.08  Aligned_cols=92  Identities=17%  Similarity=0.254  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q psy4651         370 RANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK  449 (721)
Q Consensus       370 ~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~  449 (721)
                      .+..|.+++.++...+.++....+-|..---.....+......-+.+-.-+.....+|..|+..+-........++..++
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk   92 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK   92 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555444444333222221111222233333333344444555555666666666555555555555555


Q ss_pred             HHHHHHHHHHHH
Q psy4651         450 KAMVDAARLADE  461 (721)
Q Consensus       450 ~l~~e~~~l~~~  461 (721)
                      ....++..+...
T Consensus        93 ~~~~el~k~~~~  104 (194)
T PF15619_consen   93 DKDEELLKTKDE  104 (194)
T ss_pred             HHHHHHHHHHHH
Confidence            544444444333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.36  E-value=6.8  Score=44.73  Aligned_cols=89  Identities=16%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy4651         525 RHADAQKNLRKTERRIKELSFQAEEDRKNHER----------------------MQDLVDKLQQKIKTYKRQIEEAEEIA  582 (721)
Q Consensus       525 ~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~----------------------l~~~~~~l~~~l~~~~~~lee~~~~~  582 (721)
                      +...+..++-+|+.-+..-..+|..++.-+..                      ..+-..+++.+++.++.....+..-.
T Consensus       584 d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlR  663 (717)
T PF09730_consen  584 DKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLR  663 (717)
T ss_pred             cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666665555555555433221                      11222334444444444444444433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         583 ALNLAKFRKAQQELEEAEERADLAEQAVSKI  613 (721)
Q Consensus       583 ~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l  613 (721)
                      +=+-+...++..+++++...+..++.+...|
T Consensus       664 amFa~RCdEYvtQldemqrqL~aAEdEKKTL  694 (717)
T PF09730_consen  664 AMFAARCDEYVTQLDEMQRQLAAAEDEKKTL  694 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3333444555556666666666665555433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0978|consensus

Probab=95.33  E-value=6.5  Score=44.38  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         511 RVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDR  551 (721)
Q Consensus       511 ~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~  551 (721)
                      .+..++..+...+.....+..++..+...+.......-++.
T Consensus       525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~  565 (698)
T KOG0978|consen  525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAK  565 (698)
T ss_pred             HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444333333333333333333333333333333

>KOG0018|consensus

Probab=95.08  E-value=9.2  Score=44.74  Aligned_cols=53  Identities=19%  Similarity=0.263  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         165 ESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWK  217 (721)
Q Consensus       165 e~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~  217 (721)
                      ......+...++.+...+.........++.+......+......++.++....
T Consensus       299 ~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~  351 (1141)
T KOG0018|consen  299 SHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS  351 (1141)
T ss_pred             ccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555555555555555555555555544433

>KOG0980|consensus

Probab=94.68  E-value=10  Score=43.34  Aligned_cols=97  Identities=14%  Similarity=0.173  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q psy4651         369 RRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKA  448 (721)
Q Consensus       369 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~  448 (721)
                      +.....+..++.++..+..+....-.+-..+++...+++.....+..+......+...+..+...........+.....+
T Consensus       417 ~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~l  496 (980)
T KOG0980|consen  417 NKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKAL  496 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444433333333333333


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy4651         449 KKAMVDAARLADELRAE  465 (721)
Q Consensus       449 ~~l~~e~~~l~~~l~~~  465 (721)
                      ..+..++.-+..++..+
T Consensus       497 e~l~~El~~l~~e~~~l  513 (980)
T KOG0980|consen  497 ESLRQELALLLIELEEL  513 (980)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>KOG0963|consensus

Probab=94.59  E-value=8.9  Score=42.19  Aligned_cols=136  Identities=19%  Similarity=0.276  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL  409 (721)
Q Consensus       330 ~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~  409 (721)
                      ..+..++..++..+..++..+........++...   ...+.....+++.-+-..++.+......++.+++.+..++...
T Consensus       192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~---~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~  268 (629)
T KOG0963|consen  192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK---YDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKA  268 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444444544444444444433333322   1222333333333333333333334444445555555444432


Q ss_pred             HHh--------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         410 SAQ--------ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQT  471 (721)
Q Consensus       410 ~~~--------~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~  471 (721)
                      ...        +..+...+...+..+..|-..+........   ..+.....+|..+..++......+..
T Consensus       269 N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~---~e~e~~~~qI~~le~~l~~~~~~lee  335 (629)
T KOG0963|consen  269 NSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV---EEREKHKAQISALEKELKAKISELEE  335 (629)
T ss_pred             hhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221        222233334455555555555553332222   22333444455554444444444333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.43  E-value=7.9  Score=40.93  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Q psy4651         336 IKRYQQQLKDVQTALEEEQRARDDA  360 (721)
Q Consensus       336 ~~~l~~~l~~l~~~lee~~~~~~~~  360 (721)
                      ...++.++..-+.++.++...-..+
T Consensus       212 ~~~l~~~l~~~q~~l~eL~~~~~~L  236 (420)
T COG4942         212 LAQLNSELSADQKKLEELRANESRL  236 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3444444444444444444433333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.15  E-value=14  Score=42.77  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         172 IALEKTKQRLATEVEDLQLEVDRANAIANAAEKK  205 (721)
Q Consensus       172 ~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~  205 (721)
                      ..|++.+..|+..+.++...+.........+-+.
T Consensus        81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~  114 (769)
T PF05911_consen   81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKA  114 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4577777777777777777776665555544443

The function of this family is unknown.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.08  E-value=0.57  Score=44.79  Aligned_cols=100  Identities=21%  Similarity=0.346  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy4651         504 AIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA  583 (721)
Q Consensus       504 ~~~~~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~  583 (721)
                      .+..+...+..+..++....+.+..+...+..+...+..+...+......+..+...+..+...+..+...+.+....+.
T Consensus        68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e  147 (194)
T PF08614_consen   68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE  147 (194)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556667777777777777777666666666666665555555555555555555555555555555555555444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy4651         584 LNLAKFRKAQQELEEAEERA  603 (721)
Q Consensus       584 ~l~~~~~~l~~~l~e~e~~~  603 (721)
                      .+..++..++-++.-++..+
T Consensus       148 ~l~DE~~~L~l~~~~~e~k~  167 (194)
T PF08614_consen  148 ILQDELQALQLQLNMLEEKL  167 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444443333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.05  E-value=8.2  Score=39.61  Aligned_cols=67  Identities=25%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         341 QQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLN  407 (721)
Q Consensus       341 ~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~  407 (721)
                      .++..++.++..+......++........++...-.+-+.+...+..+.+.+-+..+++..+..+..
T Consensus        81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q  147 (499)
T COG4372          81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQ  147 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444333333333333333333333333333333333333333333333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=93.51  E-value=7.3  Score=37.27  Aligned_cols=10  Identities=10%  Similarity=0.305  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q psy4651         185 VEDLQLEVDR  194 (721)
Q Consensus       185 i~~l~~~le~  194 (721)
                      +..+...++.
T Consensus        25 ~~~l~~k~~e   34 (207)
T PF05010_consen   25 EQELKKKYEE   34 (207)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG4593|consensus

Probab=93.25  E-value=17  Score=40.68  Aligned_cols=12  Identities=33%  Similarity=0.387  Sum_probs=6.1

Q ss_pred             hhhchHHHHHhH
Q psy4651         651 LFLLEEEFENTR  662 (721)
Q Consensus       651 l~~~~ee~e~~r  662 (721)
                      +..++.+.+.++
T Consensus       561 ~e~LqaE~~~lk  572 (716)
T KOG4593|consen  561 LEELQAELERLK  572 (716)
T ss_pred             HHHHHHHHHHHH
Confidence            444555555554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.96  E-value=1.6  Score=41.69  Aligned_cols=98  Identities=12%  Similarity=0.178  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4651         509 EQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAK  588 (721)
Q Consensus       509 ~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~  588 (721)
                      ...+..+..........+..+...+..++..+......+..+...+..+...+..+...+......++.+.+++..+...
T Consensus        80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~  159 (194)
T PF08614_consen   80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ  159 (194)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444444444444444444444444444444444444444444444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy4651         589 FRKAQQELEEAEERADLA  606 (721)
Q Consensus       589 ~~~l~~~l~e~e~~~~~~  606 (721)
                      +.-+...+..++.+...+
T Consensus       160 ~~~~e~k~~~l~~En~~L  177 (194)
T PF08614_consen  160 LNMLEEKLRKLEEENREL  177 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555555554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.84  E-value=15  Score=38.96  Aligned_cols=17  Identities=12%  Similarity=0.210  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy4651         293 LEVEKDELQAALEEAEA  309 (721)
Q Consensus       293 le~e~~~l~~~le~~~~  309 (721)
                      ...++..+...++++..
T Consensus        85 s~~~l~~~~~~I~~~~~  101 (420)
T COG4942          85 TADDLKKLRKQIADLNA  101 (420)
T ss_pred             HHhHHHHHHhhHHHHHH
Confidence            33333333333443333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=92.80  E-value=13  Score=38.08  Aligned_cols=37  Identities=11%  Similarity=0.241  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy4651         387 QADRGRRQAETELADAHEQLNELSAQATSISAAKRKL  423 (721)
Q Consensus       387 ~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~l  423 (721)
                      +.....+.|..++..|+..+.++...+..+...+...
T Consensus        76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~  112 (319)
T PF09789_consen   76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ  112 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence            3444556677777777777777666666555544443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.72  E-value=11  Score=36.97  Aligned_cols=67  Identities=24%  Similarity=0.305  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Q psy4651         455 AARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGE  522 (721)
Q Consensus       455 ~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~ele~~  522 (721)
                      +..|..+...+...|..+++.+.+|.-++.--..++.-++.... .....+..+++.+..+..+|+..
T Consensus        62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~-s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen   62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN-SCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445555555555554444333333332222222 12233444444444444444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0962|consensus

Probab=92.62  E-value=30  Score=42.00  Aligned_cols=75  Identities=20%  Similarity=0.330  Sum_probs=41.8

Q ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651           2 GEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIAL----------EKTKQRLATEVEDLQLEVDRANAIANAAEKKAK   71 (721)
Q Consensus         2 ~~~~~~~~~~~~~k~l~~~~~~l~~~le~~~~~~~~~----------~~~~~~~~~e~~~l~~~l~~~~~~~~~l~~~~~   71 (721)
                      +-|+|+++..  ++.....+......++.++.-....          ...+......+..+..++.+....+..+.....
T Consensus       184 ~KAld~~kk~--rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~  261 (1294)
T KOG0962|consen  184 TKALDSLKKL--RKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLK  261 (1294)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4688998888  7777777777777776665444432          223333344444444444444444444444444


Q ss_pred             HHHHHHH
Q psy4651          72 AIDKIIG   78 (721)
Q Consensus        72 ~le~~~~   78 (721)
                      .|+..+.
T Consensus       262 el~k~~~  268 (1294)
T KOG0962|consen  262 ELEKLLK  268 (1294)
T ss_pred             HHHHHHH
Confidence            4444333

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=92.45  E-value=3.3  Score=30.81  Aligned_cols=58  Identities=17%  Similarity=0.360  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         515 LENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYK  572 (721)
Q Consensus       515 l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~  572 (721)
                      |++.|+...+....++.++.+++...-.+...|.+....+..+...+..+..++..++
T Consensus         2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen    2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5666777777777777888888888888888888877777777766666666555443

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG0980|consensus

Probab=92.21  E-value=26  Score=40.28  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHH
Q psy4651         337 KRYQQQLKDVQTALEEEQRAR  357 (721)
Q Consensus       337 ~~l~~~l~~l~~~lee~~~~~  357 (721)
                      ..+..++..+...+.+.++..
T Consensus       361 ~q~~~ql~~le~~~~e~q~~~  381 (980)
T KOG0980|consen  361 EQYENQLLALEGELQEQQREA  381 (980)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH
Confidence            334444444444444444333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=92.10  E-value=15  Score=37.12  Aligned_cols=17  Identities=12%  Similarity=0.282  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy4651         370 RANALQNELEESRQLLE  386 (721)
Q Consensus       370 ~~~~l~~ele~~~~~~~  386 (721)
                      .+..|..+++.+..+..
T Consensus        53 ~l~~L~~d~~~L~~k~~   69 (264)
T PF06008_consen   53 ELESLEQDVENLQEKAT   69 (264)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444433333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.88  E-value=7.8  Score=33.52  Aligned_cols=17  Identities=47%  Similarity=0.812  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHhhH
Q psy4651         418 AAKRKLEGELQTLHSDL  434 (721)
Q Consensus       418 ~~~~~le~el~~lk~~l  434 (721)
                      ..++.++.++..++.++
T Consensus        23 s~lr~~E~E~~~l~~el   39 (120)
T PF12325_consen   23 SQLRRLEGELASLQEEL   39 (120)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=91.54  E-value=17  Score=36.68  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         155 ARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAI  198 (721)
Q Consensus       155 ~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~  198 (721)
                      ..+..+...+........+.......++..+..|..+++.+...
T Consensus        24 ~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k   67 (264)
T PF06008_consen   24 SSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEK   67 (264)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444455554444444433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.20  E-value=10  Score=33.58  Aligned_cols=14  Identities=36%  Similarity=0.707  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHH
Q psy4651         478 ALETQIKELQIRLD  491 (721)
Q Consensus       478 ~Le~e~~~L~~~l~  491 (721)
                      .|+.++.++..+++
T Consensus       102 ~le~e~~~~~~r~~  115 (132)
T PF07926_consen  102 QLEKELSELEQRIE  115 (132)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.15  E-value=9.3  Score=33.03  Aligned_cols=44  Identities=27%  Similarity=0.406  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         152 KLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA  195 (721)
Q Consensus       152 ~l~~~l~~l~~~le~~~~~~~~le~~~~~le~ei~~l~~~le~~  195 (721)
                      .+...+..+..++..++..+..+...+..+..+|-.+....+..
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555556655555555555555544443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=90.31  E-value=27  Score=37.00  Aligned_cols=21  Identities=0%  Similarity=0.118  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy4651         205 KAKAIDKIIGEWKLKVDDLAA  225 (721)
Q Consensus       205 ~~~~le~~l~e~~~~~~~~~~  225 (721)
                      ..+.|...+...+..+.+...
T Consensus       391 ~lqnLqe~la~tqk~LqEsr~  411 (527)
T PF15066_consen  391 TLQNLQEALANTQKHLQESRN  411 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.29  E-value=17  Score=34.45  Aligned_cols=18  Identities=22%  Similarity=0.289  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy4651         183 TEVEDLQLEVDRANAIAN  200 (721)
Q Consensus       183 ~ei~~l~~~le~~~~~~~  200 (721)
                      ++|.-|+..|.......+
T Consensus        10 GEIsLLKqQLke~q~E~~   27 (202)
T PF06818_consen   10 GEISLLKQQLKESQAEVN   27 (202)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            455555555544444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.93  E-value=27  Score=36.39  Aligned_cols=52  Identities=17%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         440 EAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       440 ~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~  491 (721)
                      -...+...+..+..+...+...+..+...+..+......|..++..|+....
T Consensus       150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~  201 (325)
T PF08317_consen  150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE  201 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555666666666666666666666666666666666655444

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.30  E-value=45  Score=39.48  Aligned_cols=14  Identities=14%  Similarity=0.102  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHH
Q psy4651         371 ANALQNELEESRQL  384 (721)
Q Consensus       371 ~~~l~~ele~~~~~  384 (721)
                      +..+..+++.++..
T Consensus       318 v~~l~~qi~~l~~~  331 (754)
T TIGR01005       318 VVAAKSSLADLDAQ  331 (754)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.95  E-value=18  Score=32.92  Aligned_cols=11  Identities=0%  Similarity=0.525  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q psy4651         336 IKRYQQQLKDV  346 (721)
Q Consensus       336 ~~~l~~~l~~l  346 (721)
                      ++.-+.++..|
T Consensus       135 ~rkke~E~~kL  145 (151)
T PF11559_consen  135 LRKKEREIEKL  145 (151)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.77  E-value=13  Score=31.01  Aligned_cols=62  Identities=21%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         238 STELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ  313 (721)
Q Consensus       238 e~e~~~l~~ele~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~~l~~  313 (721)
                      ...+..|...+++.......+.+.+..|...+..|.              .........+.+++..++++...++.
T Consensus        15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~--------------~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQ--------------AQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433333333333333              33333444444555555555444444

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=88.76  E-value=22  Score=33.69  Aligned_cols=49  Identities=16%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651         329 NAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNE  377 (721)
Q Consensus       329 ~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~e  377 (721)
                      +...+.+...++.+=.-|..+-+.+.+--..+...+-.+-++...|..+
T Consensus       151 r~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~  199 (202)
T PF06818_consen  151 RQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERE  199 (202)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445555555566555555554444444444455555555444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=88.64  E-value=47  Score=37.41  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=19.1

Q ss_pred             HHhhhhhhchHHHHHhHhhHHHHHHHHH
Q psy4651         646 KLVLHLFLLEEEFENTRKNHQRALDSMQ  673 (721)
Q Consensus       646 ~~~~~l~~~~ee~e~~rk~~~~~v~~l~  673 (721)
                      .+...|.+.+-.+...||-|.+.|.+|-
T Consensus       586 rl~E~L~~~E~rLNeARREHtKaVVsLR  613 (739)
T PF07111_consen  586 RLREQLSEMEKRLNEARREHTKAVVSLR  613 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666777777888888877653

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.58  E-value=13  Score=30.93  Aligned_cols=66  Identities=18%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651         364 LGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDE  436 (721)
Q Consensus       364 ~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~  436 (721)
                      ...++..+..|+..++..+.....+-..+..       |...+..+..........+..++..|.++...++.
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~-------L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGELAKQKDQ-------LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555544444333333       33333333333333333444444445555544444

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.48  E-value=24  Score=33.83  Aligned_cols=101  Identities=14%  Similarity=0.273  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         335 NIKRYQQQLKDVQTALEEEQRARDD---AREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSA  411 (721)
Q Consensus       335 ~~~~l~~~l~~l~~~lee~~~~~~~---~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~  411 (721)
                      ++..+..++..|+..+....+....   +...+..++..+..+.++.+.+...+..+...|..|...+..+-..+..-.+
T Consensus        63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~  142 (201)
T PF13851_consen   63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTG  142 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444333332   2333444566666666666666666666665555555555554444443322


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHhhHH
Q psy4651         412 QA-TSISAAKRKLEGELQTLHSDLD  435 (721)
Q Consensus       412 ~~-~~l~~~~~~le~el~~lk~~le  435 (721)
                      .. .-|+..+..+...+..-..++.
T Consensus       143 ~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen  143 LKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 2234444444444444444433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=88.32  E-value=29  Score=34.52  Aligned_cols=38  Identities=21%  Similarity=0.456  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHH
Q psy4651         330 AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV  367 (721)
Q Consensus       330 ~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l  367 (721)
                      .++...+..++.++...+..|.........+......+
T Consensus         8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~a   45 (246)
T PF00769_consen    8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQA   45 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555554444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=88.12  E-value=35  Score=35.27  Aligned_cols=60  Identities=27%  Similarity=0.370  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         350 LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNEL  409 (721)
Q Consensus       350 lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~  409 (721)
                      +|+....+..+..++...+........+-+..+..+......+.....++..++..+...
T Consensus        76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kA  135 (499)
T COG4372          76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA  135 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444444444444444444444443333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=87.78  E-value=11  Score=29.21  Aligned_cols=63  Identities=16%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         163 TIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAA  225 (721)
Q Consensus       163 ~le~~~~~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~  225 (721)
                      .++.++..+..+-..+.-|+.+++.|...-..+......+......+..+...|..++..+-+
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~   67 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666677777777777666666655555555555555555666655554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0963|consensus

Probab=87.25  E-value=53  Score=36.44  Aligned_cols=45  Identities=11%  Similarity=-0.043  Sum_probs=20.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         566 QKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAV  610 (721)
Q Consensus       566 ~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~  610 (721)
                      .++..++.....+...+..+......+.......+.-+..++..+
T Consensus       390 ~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl  434 (629)
T KOG0963|consen  390 NENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDL  434 (629)
T ss_pred             HHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            333333333333333444444444445555544444445554444

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=87.18  E-value=31  Score=33.64  Aligned_cols=102  Identities=19%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy4651         336 IKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA------------DRGRRQAETELADAH  403 (721)
Q Consensus       336 ~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~------------~~~~~~l~~el~~l~  403 (721)
                      .+.++.-+.+++..+..+......+......+++++..+....+.|......+            ...+..++..+..+.
T Consensus        26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~  105 (225)
T COG1842          26 EKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALE  105 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666666666666666666666667666666666665444321            123455555555555


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4651         404 EQLNELSAQATSISAAKRKLEGELQTLHSDLDEL  437 (721)
Q Consensus       404 ~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~  437 (721)
                      ..+.........+...+..++..|.+++.....+
T Consensus       106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l  139 (225)
T COG1842         106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL  139 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555666666666665555533

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=86.01  E-value=38  Score=33.55  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy4651         323 LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA  360 (721)
Q Consensus       323 ~~l~~~~~~~~~~~~~l~~~l~~l~~~lee~~~~~~~~  360 (721)
                      .+|+......+..+..|+.++..+.+++.....+...+
T Consensus        70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L  107 (258)
T PF15397_consen   70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL  107 (258)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555666666777776666666666655554

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=85.97  E-value=27  Score=31.86  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         175 EKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKV  220 (721)
Q Consensus       175 e~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~  220 (721)
                      ......+..++.++...+...-.....++...+.....|.+....+
T Consensus        26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f   71 (159)
T PF05384_consen   26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF   71 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333444444444444444444444444444444444444444444

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.78  E-value=43  Score=33.96  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHH
Q psy4651         416 ISAAKRKLEGELQTLHSDLD  435 (721)
Q Consensus       416 l~~~~~~le~el~~lk~~le  435 (721)
                      +...+..+-.+|..++..+.
T Consensus       227 ~~shI~~Lr~EV~RLR~qL~  246 (310)
T PF09755_consen  227 LSSHIRSLRQEVSRLRQQLA  246 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=85.48  E-value=86  Score=37.13  Aligned_cols=27  Identities=7%  Similarity=0.107  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651         335 NIKRYQQQLKDVQTALEEEQRARDDAR  361 (721)
Q Consensus       335 ~~~~l~~~l~~l~~~lee~~~~~~~~~  361 (721)
                      ....+..++..++.+++.+........
T Consensus       195 a~~~L~~ql~~l~~~l~~aE~~l~~fk  221 (754)
T TIGR01005       195 AADFLAPEIADLSKQSRDAEAEVAAYR  221 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666655555555444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.46  E-value=45  Score=33.85  Aligned_cols=16  Identities=19%  Similarity=0.258  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4651         367 VERRANALQNELEESR  382 (721)
Q Consensus       367 l~~~~~~l~~ele~~~  382 (721)
                      |-+++..+..+.+.+-
T Consensus        82 LlKkl~~l~keKe~L~   97 (310)
T PF09755_consen   82 LLKKLQQLKKEKETLA   97 (310)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>KOG1853|consensus

Probab=85.23  E-value=37  Score=32.78  Aligned_cols=16  Identities=19%  Similarity=0.378  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4651         476 RKALETQIKELQIRLD  491 (721)
Q Consensus       476 k~~Le~e~~~L~~~l~  491 (721)
                      ..+|..+..||...|.
T Consensus       166 vqRLkdEardlrqela  181 (333)
T KOG1853|consen  166 VQRLKDEARDLRQELA  181 (333)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4455566666665555

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=85.18  E-value=68  Score=35.74  Aligned_cols=16  Identities=25%  Similarity=0.277  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHhhH
Q psy4651         419 AKRKLEGELQTLHSDL  434 (721)
Q Consensus       419 ~~~~le~el~~lk~~l  434 (721)
                      ++..++.++..+...+
T Consensus       255 ~l~~l~~~l~~l~~~y  270 (498)
T TIGR03007       255 RIEALEKQLDALRLRY  270 (498)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3334444444444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=84.67  E-value=59  Score=34.60  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         287 EKARKRLEVEKDELQAALEEAEA  309 (721)
Q Consensus       287 ~~~~~~le~e~~~l~~~le~~~~  309 (721)
                      ...+.+|..+++.+..+.+.+..
T Consensus       374 n~Ere~L~reL~~i~~~~~~L~k  396 (622)
T COG5185         374 NQEREKLTRELDKINIQSDKLTK  396 (622)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHH
Confidence            33445555555555555555544

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.17  E-value=60  Score=34.23  Aligned_cols=93  Identities=14%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4651         510 QRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKF  589 (721)
Q Consensus       510 ~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~  589 (721)
                      .+-.-+..+++....+.+.....+..++..++.....+......+..+.++++.....+......+.+-        +.+
T Consensus       259 sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~--------sPl  330 (359)
T PF10498_consen  259 SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG--------SPL  330 (359)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--------CHH
Confidence            333444455555555555555555555555555555555555444444444444444433333333222        234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy4651         590 RKAQQELEEAEERADLAEQAV  610 (721)
Q Consensus       590 ~~l~~~l~e~e~~~~~~e~~~  610 (721)
                      ..+...+..++.++..+..++
T Consensus       331 v~IKqAl~kLk~EI~qMdvrI  351 (359)
T PF10498_consen  331 VKIKQALTKLKQEIKQMDVRI  351 (359)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence            445555555555555444444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.79  E-value=59  Score=33.89  Aligned_cols=27  Identities=19%  Similarity=0.080  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         165 ESLNQKVIALEKTKQRLATEVEDLQLE  191 (721)
Q Consensus       165 e~~~~~~~~le~~~~~le~ei~~l~~~  191 (721)
                      +-..-.|..|.+.+..-..-+.++..+
T Consensus        71 ely~~~c~EL~~~I~egr~~~~~~E~~   97 (325)
T PF08317_consen   71 ELYQFSCRELKKYISEGRQIFEEIEEE   97 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.13  E-value=52  Score=32.72  Aligned_cols=19  Identities=32%  Similarity=0.604  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy4651         174 LEKTKQRLATEVEDLQLEV  192 (721)
Q Consensus       174 le~~~~~le~ei~~l~~~l  192 (721)
                      +......++.+|+.|...+
T Consensus        43 ~~~~~~~~q~ei~~L~~qi   61 (265)
T COG3883          43 LQKEKKNIQNEIESLDNQI   61 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.91  E-value=75  Score=34.40  Aligned_cols=18  Identities=6%  Similarity=0.204  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHhHH
Q psy4651         334 KNIKRYQQQLKDVQTALE  351 (721)
Q Consensus       334 ~~~~~l~~~l~~l~~~le  351 (721)
                      .++..+..++..++..+.
T Consensus        81 ~~l~~l~~~~~~l~a~~~   98 (423)
T TIGR01843        81 ADAAELESQVLRLEAEVA   98 (423)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            344445555544444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0249|consensus

Probab=82.52  E-value=92  Score=35.18  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHH
Q psy4651         367 VERRANALQNELEES  381 (721)
Q Consensus       367 l~~~~~~l~~ele~~  381 (721)
                      +...+..+..++..+
T Consensus       168 l~~~~qe~naeL~ra  182 (916)
T KOG0249|consen  168 LEEQLEELNAELQRA  182 (916)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333343333

>KOG0962|consensus

Probab=82.23  E-value=1.3e+02  Score=36.84  Aligned_cols=71  Identities=11%  Similarity=0.078  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4651         539 RIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGG  618 (721)
Q Consensus       539 ~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~~l~~~~~  618 (721)
                      .+..+..++.++.++...+..++....         ..........|...+..+.+....+.+.....+..+..++.++.
T Consensus      1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~---------~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD---------IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            344444555555554444444333222         22222333444445555666666666666677777766666654

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=82.19  E-value=82  Score=34.39  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHHhhchhhhhchHhHHHHhhhhhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4651          91 DRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQK  170 (721)
Q Consensus        91 ~~~~~l~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~e~~~l~~~le~~~~~~~~~le~~~k~l~~~l~~l~~~le~~~~~  170 (721)
                      ..+.....++......++.+...+  ...+|.    ++..|+.-|. ++....-.+..  -.+...+..+...+......
T Consensus       200 ~~~ee~~~~L~~~~e~IP~L~~e~--~~~lP~----ql~~Lk~Gyr-~m~~~gY~l~~--~~id~~~~~L~~~l~~~~~~  270 (570)
T COG4477         200 EEAEEHMIALRSIMERIPSLLAEL--QTELPG----QLQDLKAGYR-DMKEEGYHLEH--VNIDSRLERLKEQLVENSEL  270 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhhchH----HHHHHHHHHH-HHHHccCCccc--ccHHHHHHHHHHHHHHHHhH
Confidence            333333333444444555444333  233333    4566555554 23332222222  23444455555554444333


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         171 -----VIALEKTKQRLATEVEDLQLEVDRANAIANAAEK  204 (721)
Q Consensus       171 -----~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~  204 (721)
                           ++.++.....++..|+.+=.-++..-.+....+.
T Consensus       271 l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~  309 (570)
T COG4477         271 LTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEE  309 (570)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 3344445555555555555555554444444433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.33  E-value=26  Score=33.14  Aligned_cols=48  Identities=27%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4651         395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAK  442 (721)
Q Consensus       395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~  442 (721)
                      ++.+++.+++++..+....+.|+...+.+..++..++.++++....++
T Consensus       161 le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            445555566666666666666666666677777777777766554433

>PF13514 AAA_27: AAA domain

Probab=80.51  E-value=1.6e+02  Score=36.65  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=18.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         573 RQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVS  611 (721)
Q Consensus       573 ~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e~~~~  611 (721)
                      .....+...+..+...+..+...+..+...+..|...+.
T Consensus       673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  711 (1111)
T PF13514_consen  673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ  711 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444455555555555555555554443

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=80.47  E-value=49  Score=30.65  Aligned_cols=39  Identities=10%  Similarity=0.125  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy4651         378 LEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI  416 (721)
Q Consensus       378 le~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l  416 (721)
                      ..++...+..+...+.-|+.+|+.|+..+......+..+
T Consensus        59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~   97 (178)
T PF14073_consen   59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAV   97 (178)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            334444555555566667777777776666655444443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=80.36  E-value=82  Score=33.21  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=17.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651         344 KDVQTALEEEQRARDDAREQLGIVERRANALQNEL  378 (721)
Q Consensus       344 ~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~el  378 (721)
                      .+|+..++........+....-.....+..+..++
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i  250 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDI  250 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            46666666665555554444444444444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=80.02  E-value=1.2e+02  Score=35.05  Aligned_cols=9  Identities=22%  Similarity=0.412  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q psy4651         300 LQAALEEAE  308 (721)
Q Consensus       300 l~~~le~~~  308 (721)
                      +..+++.++
T Consensus       207 ~~~~~~~le  215 (650)
T TIGR03185       207 ILSEIEALE  215 (650)
T ss_pred             HHHHHHHHH
Confidence            333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=80.01  E-value=62  Score=31.54  Aligned_cols=101  Identities=23%  Similarity=0.311  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q psy4651         337 KRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD------------RGRRQAETELADAHE  404 (721)
Q Consensus       337 ~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~------------~~~~~l~~el~~l~~  404 (721)
                      ..+...+.++...+..+...+..+......+++.+..+...+..|......+.            ..+..++..+..+..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~  105 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ  105 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555666666666666666655444322            223445555555555


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4651         405 QLNELSAQATSISAAKRKLEGELQTLHSDLDEL  437 (721)
Q Consensus       405 ~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~  437 (721)
                      .+.........+...+..+...+.+++.+...+
T Consensus       106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l  138 (221)
T PF04012_consen  106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREEL  138 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	721
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-29
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-27
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-27
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-24
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-21
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
2xs1_A	704	Programmed cell death 6-interacting protein; prote	3e-11
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	3e-08
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-05
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	5e-05
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	5e-05
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	5e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-04
1yvl_A	683	Signal transducer and activator of transcription 1	5e-04
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  124 bits (314), Expect = 2e-29
 Identities = 70/336 (20%), Positives = 150/336 (44%), Gaps = 12/336 (3%)

Query: 231  QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR 290
            ++E +    EL R K   ++A+ +L+ + +++  L +E   L +++        E E+ R
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 291  KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTAL 350
             RL  +K EL+  L E EA +E+EE           + + + Q   K+ QQQ+ D++  L
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEE-----------ERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 351  EEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELS 410
            EEE+ AR   + +    + +   +++++        +  + R+  E  ++D    L E  
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 411  AQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQ 470
             +A +++  K K E  +  L   L +     +  E+  +K   +++ L +++   Q    
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 471  TQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQ 530
              +      E +++    RL++ E +      K I++LE  + +L+ +L+ E+     A+
Sbjct: 1085 ELKAQLAKKEEELQAALARLED-ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 531  KNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQ 566
            K  R     ++ L  + E+        Q+L     +
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  118 bits (298), Expect = 1e-27
 Identities = 66/352 (18%), Positives = 149/352 (42%), Gaps = 19/352 (5%)

Query: 169  QKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELD 228
             KV   E+  Q    E++  +    +A A     E+K   + +     + K+        
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 229  ASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEK 288
             +++     + +   L+    E + ++E     ++ L  E K +  Q+ +    + E E 
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 289  ARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
            AR++L++EK      +++ E  +   E++           N +  K  K  ++++ D+ T
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQ-----------NNKLTKERKLLEERVSDLTT 1018

Query: 349  ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNE 408
             L EE+    +  +     E   + L+  L++  +  ++ ++ +R+ E E +D HEQ+ E
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 409  LSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDH 468
            L AQ   + A   K E ELQ   + L++  ++  N+ +K ++     + L ++L +E+  
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

Query: 469  AQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELD 520
                EK ++ L  +++ L+  L++                ++       + D
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTL--------DTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  116 bits (292), Expect = 7e-27
 Identities = 65/424 (15%), Positives = 154/424 (36%), Gaps = 58/424 (13%)

Query: 288  KARKRLEVEKDELQAALE-----EAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQ 342
             ARK     + +L++         +   +       L   +         ++ ++   ++
Sbjct: 806  LARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEE 865

Query: 343  LKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
            L+  +   ++ +    +  ++   +    N LQ +L+   +L  +A+  R +   +  + 
Sbjct: 866  LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925

Query: 403  HEQLNELSA-------QATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDA 455
             E L+E+ A       ++  + A K+K++ ++  L   L+E     +  + +   A    
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 456  ARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVREL 515
             ++ D++   +D      K RK LE ++ +L   L E E    K   K   K E  + EL
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE-KAKNLTKLKNKHESMISEL 1044

Query: 516  ENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQI 575
            E  L  E++   + +K  RK E    +L  Q  E +     ++  + K +++++    ++
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104

Query: 576  EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTF 635
            E+        L K R+ +  + + +E  +  + A +K                       
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA---------------------- 1142

Query: 636  CRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEA 695
                                   E  +++    L++++  LE      A    ++     
Sbjct: 1143 -----------------------EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179

Query: 696  DINE 699
            D ++
Sbjct: 1180 DDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  107 bits (269), Expect = 4e-24
 Identities = 56/301 (18%), Positives = 121/301 (40%), Gaps = 18/301 (5%)

Query: 150  RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
            +  LQ +L    E      +  + L   KQ L   + +++  ++     +   + + K +
Sbjct: 894  KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 210  DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
             + + + + ++++  A     Q E      ++ +++      ++Q   + +E K L + V
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 270  KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
             DL   +        E E+  K L   K++ ++ + E E  L++EE           ++ 
Sbjct: 1014 SDLTTNL-------AEEEEKAKNLTKLKNKHESMISELEVRLKKEE-----------KSR 1055

Query: 330  AEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQAD 389
             E +K  ++ + +  D+   + E Q    + + QL   E    A    LE+       A 
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 390  RGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAK 449
            +  R+ E+ ++D  E L    A        KR L  EL+ L ++L++ L+     +E   
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

Query: 450  K 450
             
Sbjct: 1176 S 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  101 bits (252), Expect = 4e-22
 Identities = 51/262 (19%), Positives = 115/262 (43%), Gaps = 10/262 (3%)

Query: 150  RRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAI 209
            +++L+  L E E  IE   ++   L+  K+++  ++ DL+ +++   A     + +    
Sbjct: 922  KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981

Query: 210  DKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEV 269
            D  I + +  +  +  + +   KE +     +  L     E +E+ + + +        +
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041

Query: 270  KDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQAN 329
             +L  ++ +  ++  E+EK +++LE E  +L   + E +A + + + ++ + + EL  A 
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

Query: 330  AE----------AQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELE 379
            A           A K I+  +  + D+Q  LE E+ AR+ A +Q   +     AL+ ELE
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161

Query: 380  ESRQLLEQADRGRRQAETELAD 401
            ++          R     +  D
Sbjct: 1162 DTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 88.4 bits (219), Expect = 4e-18
 Identities = 52/359 (14%), Positives = 133/359 (37%), Gaps = 37/359 (10%)

Query: 15   RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 74
            +     L   +E  +    ++  LE+   +L  E   LQ ++     +   AE+    + 
Sbjct: 860  QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919

Query: 75   KIIGEWKLKVS-LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIP 133
                E +  +  ++  ++     +   + + K + + + + + +                
Sbjct: 920  AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ---------------- 963

Query: 134  FLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVD 193
             L E+           R+KLQ     A+  I+ +   ++ +E    +L  E + L+  V 
Sbjct: 964  -LEEEEAA--------RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 194  RANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQE 253
                     E+KAK + K+  + +  + +L   L   +K  +       +L+G   +  E
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074

Query: 254  QLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQ 313
            Q+  ++ +   L  ++    +++      + +    +     +  EL++ + + +  LE 
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134

Query: 314  EENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRAN 372
            E+            A  +A+K  +   ++L+ ++T LE+        +E  G   +  +
Sbjct: 1135 EK-----------AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 41/295 (13%), Positives = 108/295 (36%), Gaps = 53/295 (17%)

Query: 6    DQLNKLKT-KRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIAN 64
            ++  +L+  K+K+Q ++ + EE +E        L+  K     +++ ++ ++       N
Sbjct: 941  ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000

Query: 65   AAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFIN 124
               K+ K              L+  V          E+KAK + K+              
Sbjct: 1001 KLTKERKL-------------LEERVSDLTTNLAEEEEKAKNLTKL-------------- 1033

Query: 125  TLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATE 184
                                     + K ++ ++E E  ++   +    LEK K++L  E
Sbjct: 1034 -------------------------KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 185  VEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRL 244
              DL  ++    A     + +    ++ +     +++D  ++ + + K+ R   + +  L
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

Query: 245  KGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDE 299
            +   E  +       ++ ++L++E++ L  ++ +        ++ R     + D+
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 49/306 (16%), Positives = 120/306 (39%), Gaps = 41/306 (13%)

Query: 12   KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAK 71
              K++L+  L E E  IE   ++   L+  K+++  ++ DL+ +++   A     + +  
Sbjct: 920  AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979

Query: 72   AIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLF 131
              D  I +      ++ ++       N   K+ K +++ + +     + +          
Sbjct: 980  TADGKIKK------MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE---------- 1023

Query: 132  IPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLE 191
                 E+  K+   L   + K ++ ++E E  ++   +    LEK K++L  E  DL  +
Sbjct: 1024 -----EEKAKN---LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 192  VDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEA 251
            +    A     + +    ++ +     +++D  ++ + + K+ R        L+    + 
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR-------ELESHISDL 1128

Query: 252  QEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAAL 311
            QE LE+ +        + +DL +          E+E  +  LE   D      E   +  
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSE----------ELEALKTELEDTLDTTATQQELRGSDY 1178

Query: 312  EQEENK 317
            + +++K
Sbjct: 1179 KDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 67/291 (23%)

Query: 419  AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKA 478
              +  + ELQ       +   E K  E+K  +   +   L ++L+AE +     E++R  
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 479  LETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTER 538
            L  +                       Q+LE+ + E+E  ++ E+ R    Q   +K ++
Sbjct: 918  LAAKK----------------------QELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955

Query: 539  RIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEE 598
            ++ +L  Q EE+    +++Q        KIK  +  I   E+       + +  ++ + +
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 599  AEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEF 658
                    E+                                               +  
Sbjct: 1016 LTTNLAEEEEKA---------------------------------------------KNL 1030

Query: 659  ENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANK 709
               +  H+  +  ++  L+ E K + E  ++K+KLE + ++L   +     
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 47/251 (18%), Positives = 101/251 (40%), Gaps = 45/251 (17%)

Query: 472  QEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQK 531
            QE+  +A + +++  + R  +AE          +++LEQ+  +L  E +  Q +     +
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAE--------AELKELEQKHTQLCEEKNLLQEKLQAETE 906

Query: 532  NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK 591
               + E     L+ + +E              L++ +   + +IEE EE +    A+ +K
Sbjct: 907  LYAEAEEMRVRLAAKKQE--------------LEEILHEMEARIEEEEERSQQLQAEKKK 952

Query: 592  AQQELEEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHL 651
             QQ++ + EE+ +  E A  K++ +                    +        K+   +
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLE--------------------KVTADGKIKKMEDDI 992

Query: 652  FLLEE---EFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHAN 708
             ++E+   +    RK  +  +  +  +L  E +      ++K K E+ I+ELE+ L    
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 709  KVRVAAISRKK 719
            K R      K+
Sbjct: 1053 KSRQELEKIKR 1063

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 32/212 (15%), Positives = 77/212 (36%), Gaps = 25/212 (11%)

Query: 1    MGEQIDQLNKL-KTKRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRA 59
            +    DQ NKL K ++ L+ R+++    +    +K   L K K +  + + +L++ + + 
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 60   NAIANAAEKKAKAIDKIIGEWKLKVSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGS 119
                   EK  + ++           L  ++    A     + +    ++ +     +  
Sbjct: 1052 EKSRQELEKIKRKLE------GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR-- 1103

Query: 120  LDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQ 179
                             E             R+L++ +++ +E +ES        EK K+
Sbjct: 1104 ----------------LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147

Query: 180  RLATEVEDLQLEVDRANAIANAAEKKAKAIDK 211
             L+ E+E L+ E++         ++   +  K
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSDYK 1179

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 99.0 bits (247), Expect = 2e-21
 Identities = 39/272 (14%), Positives = 90/272 (33%), Gaps = 20/272 (7%)

Query: 284  HEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQL 343
            + V K  + +      LQA L       + +        + + Q +         Y + L
Sbjct: 829  YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIII-QKHVRGWLARVHYHRTL 887

Query: 344  KDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAH 403
            K +                Q       A     +L+   + +E+  +     E ++    
Sbjct: 888  KAIV-------------YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQ 934

Query: 404  EQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR 463
             +++E + +  S+      LE    T    L   +   + SEE+AK A      L +E+ 
Sbjct: 935  RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994

Query: 464  AEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQ 523
              +      +  +K +E    + +   ++  +      K+    L+    EL   +  + 
Sbjct: 995  KLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL----KEQNTLLKTEKEELNRRIHDQA 1050

Query: 524  RRHADAQKNLRKTERRIKELSFQAEEDRKNHE 555
            +   +  +  +K     K+L     ++R  ++
Sbjct: 1051 KEITETME--KKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 40/254 (15%), Positives = 90/254 (35%), Gaps = 16/254 (6%)

Query: 243  RLKGAYEEAQEQLEA--VRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDEL 300
             ++ A    Q  L    VR + + +  E K ++ Q    G           R       L
Sbjct: 837  CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG---WLARVHYHRTLKAIVYL 893

Query: 301  QAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDA 360
            Q       A  E ++ K+    +E        +K     + ++  +Q  ++E+ +     
Sbjct: 894  QCCYRRMMAKRELKKLKIEARSVE------RYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 361  REQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAK 420
             E++  +E   +    +L    + L  ++   + A   +    E++ +L  +       K
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 421  RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
            + +E        + ++L++E K      K    +  R     R      +  E + K L 
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR-----RIHDQAKEITETMEKKLV 1062

Query: 481  TQIKELQIRLDEAE 494
             + K+L++ L++  
Sbjct: 1063 EETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 5e-12
 Identities = 34/207 (16%), Positives = 84/207 (40%), Gaps = 7/207 (3%)

Query: 154  QARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKII 213
              R   A        + ++ L+   +R+  + E  +L++          +K    ++  I
Sbjct: 873  HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI--EARSVERYKKLHIGLENKI 930

Query: 214  GEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLL 273
             + + K+D+   E  +  ++  N                E+L     E KN  + V  L 
Sbjct: 931  MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990

Query: 274  DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAEAQ 333
            ++I +  + +H+ +  +K +E   D+ +   E+  + L+++   +   + EL++   +  
Sbjct: 991  EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

Query: 334  KNI-----KRYQQQLKDVQTALEEEQR 355
            K I     K+  ++ K ++  L +E+ 
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 35/237 (14%), Positives = 78/237 (32%), Gaps = 8/237 (3%)

Query: 231  QKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKAR 290
            Q   R Y           E     ++   R         + L   +    +  +    A+
Sbjct: 846  QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL--QCCYRRMMAK 903

Query: 291  KRLEVEKDELQA--ALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQT 348
            + L+  K E ++    ++    LE +  ++ R   E ++      + +   +        
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 349  ALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQL-- 406
             L  +      + E+      R  +LQ E+ + R+ L Q    ++  E        +   
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023

Query: 407  --NELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADE 461
              +EL  Q T +   K +L   +     ++ E + +    E K  +  ++  RL  +
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 4e-11
 Identities = 26/194 (13%), Positives = 75/194 (38%), Gaps = 20/194 (10%)

Query: 151  RKLQARLAEAEETIESLNQKVIALEK----TKQRLATEVEDLQLEVDRANAIANAAEKKA 206
            ++   +L     ++E   +  I LE      ++++  + ++             +  +K 
Sbjct: 903  KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY-----------KSLLEKM 951

Query: 207  KAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLA 266
              ++        K+      L  S++E +N +  +  L+    + +++L   + E K + 
Sbjct: 952  NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 267  DEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLELS 326
            +       +  +    + E+++    L+ EK+EL   + +    + +   K L  + +  
Sbjct: 1012 EWADKYKHETEQ---LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

Query: 327  QANAEAQKNIKRYQ 340
            + +   ++   RYQ
Sbjct: 1069 ELDLNDER--LRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 12/250 (4%)

Query: 421  RKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALE 480
            R     LQ L               E     +    R            +    L+    
Sbjct: 839  RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898

Query: 481  TQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRI 540
              + + +++  + E  +++  KK    LE ++ +L+ ++D + + +    + +   E   
Sbjct: 899  RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958

Query: 541  KELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQEL---- 596
               + +   D +     ++       ++ + + +I +  +       + +  ++      
Sbjct: 959  STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018

Query: 597  EEAEERADLAEQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEE 656
             E E+     ++  + ++T+   + R              ++IT  +  KLV     LE 
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQA--------KEITETMEKKLVEETKQLEL 1070

Query: 657  EFENTRKNHQ 666
            +  + R  +Q
Sbjct: 1071 DLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 34/265 (12%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 445  EEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKA 504
              +A   +    R+    +  Q        L+  L   +   + ++   E+ ++   +K 
Sbjct: 815  RTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIII-QKH 873

Query: 505  IQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKL 564
            ++    RV            +    +   ++  +++K  +   E  +K H  +++ + +L
Sbjct: 874  VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933

Query: 565  QQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGS 624
            Q+KI    ++ +   E        +    ++L    ER  ++E+       +        
Sbjct: 934  QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR-------- 985

Query: 625  SPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKA 684
                                      +  L+EE    RK   +     +   E   K K 
Sbjct: 986  --------------------------VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019

Query: 685  EALRMKKKLEADINELEIALDHANK 709
            E  ++  +L+     L+   +  N+
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 30/278 (10%), Positives = 88/278 (31%), Gaps = 46/278 (16%)

Query: 446  EKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAI 505
            ++ +        L   LR      + Q  LR+     I++  +R   A  +  +  K  +
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK-HVRGWLARVHYHRTLKAIV 891

Query: 506  Q----KLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLV 561
                       +    +L  E R     +K     E +I +L  + +E  K ++ + + +
Sbjct: 892  YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951

Query: 562  DKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVA 621
            + L+    T   ++    E   ++  + + A   +   +E      + + + +T+     
Sbjct: 952  NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE----- 1006

Query: 622  RGSSPLKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAK 681
                                             ++  E     ++   + + + L+ +  
Sbjct: 1007 ---------------------------------KKTIEEWADKYKHETEQLVSELKEQ-- 1031

Query: 682  GKAEALRMKKKLEADINELEIALDHANKVRVAAISRKK 719
                    K++L   I++    +    + ++   +++ 
Sbjct: 1032 -NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 2e-12
 Identities = 92/676 (13%), Positives = 200/676 (29%), Gaps = 170/676 (25%)

Query: 1   MGEQIDQLNKLKTKRKLQARLAEAEETIESLNQKVIALEKTKQRLAT-EVEDLQLEVDRA 59
            GE      + + K  L       +  +++ + K +  +  K  L+  E++ + +  D  
Sbjct: 11  TGEH-----QYQYKDILSVFE---DAFVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAV 61

Query: 60  NA----IANAAEKKAKAIDKIIGEWKLKVSLQLEVD-RANAIANAAEKKAKAIDKIIGEW 114
           +           K+ + + K + E      L++      + I    E++  ++   +   
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSPIKT--EQRQPSMMTRMYI- 113

Query: 115 KLKGSLDFINTLYCLLFIPFLNEKSLKHPYPLFFPRRKLQARLAEAEETIESLN-QKVIA 173
                 +  + LY        N+  +   Y +   R +   +L +A   +  L   K + 
Sbjct: 114 ------EQRDRLY--------NDNQVFAKYNV--SRLQPYLKLRQA---LLELRPAKNVL 154

Query: 174 LE----KTKQRLATEV-EDLQLEVDRANAI--ANAAEKKAKAIDKIIGEWKL--KVD-DL 223
           ++      K  +A +V    +++      I   N           +    KL  ++D + 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNW 213

Query: 224 AAELDASQK------ECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD----EVKDLL 273
            +  D S          +     L + K  YE     L  V+  N    +      K LL
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQ--NAKAWNAFNLSCKILL 270

Query: 274 ---DQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA------ALEQEENKVLRAQ-- 322
                     + + +   A     +  D     L   E        L+      L  +  
Sbjct: 271 TTRF------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVL 323

Query: 323 ----LELSQANAEAQKNIKRYQQ----QLKDVQTALE--------EEQRARDDAREQLGI 366
                 LS      +  +  +          + T +E         E R      ++L +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSV 380

Query: 367 VERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGE 426
               A+           LL          +   +D    +N+L       S  +++ +  
Sbjct: 381 FPPSAHI-------PTILLS-----LIWFDVIKSDVMVVVNKLHKY----SLVEKQPKES 424

Query: 427 LQTLHSDLDELLNEAKNSEEKAK-KAMVDAARLA------DELRAEQD---------HAQ 470
             ++   +  L  + K   E A  +++VD   +       D +    D         H  
Sbjct: 425 TISIP-SIY-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-- 480

Query: 471 TQEKLRKALETQIKEL--QIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHAD 528
               L+     +   L   + LD              + LEQ++R      +        
Sbjct: 481 ----LKNIEHPERMTLFRMVFLD-------------FRFLEQKIRHDSTAWNASGSILNT 523

Query: 529 AQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAK 588
            Q  L+  +  I            N  + + LV+ +   +   +  +  ++    L +A 
Sbjct: 524 LQ-QLKFYKPYI----------CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

Query: 589 FRKAQQELEEAEERAD 604
             + +   EEA ++  
Sbjct: 573 MAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 6e-12
 Identities = 92/657 (14%), Positives = 191/657 (29%), Gaps = 181/657 (27%)

Query: 103 KAKAIDKIIGEWKLKGSLDFINTLYCLLFIP------FLNEKSLKHPYPLFFPRRKLQAR 156
             + ID II           +   + LL         F+ E  L+  Y        L + 
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEE-VLRINYKF------LMSP 97

Query: 157 LAEAEETIESLNQKVIALEKTKQRLATEVEDL-QLEVDRA---NAIANAAEKKAKAIDKI 212
           +   E+   S+  ++    + + RL  + +   +  V R      +  A   + +    +
Sbjct: 98  IKT-EQRQPSMMTRM--YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNV 153

Query: 213 I-------GEWKLKVDDLAAELDASQKECRNYSTELFRLK-GAYEEAQEQLEAVRRENKN 264
           +       G+       +A ++  S K       ++F L        +  LE +++    
Sbjct: 154 LIDGVLGSGKT---W--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 265 LADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENKVLRAQLE 324
           +        D        IH ++   +RL   K      L             VL     
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------------VLL---- 251

Query: 325 LSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG---IVERR----ANALQNE 377
                               +VQ A  +   A +     L    ++  R     + L   
Sbjct: 252 --------------------NVQNA--KAWNAFN-----LSCKILLTTRFKQVTDFLSAA 284

Query: 378 LEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDEL 437
              +   L+         E +          L  +                 L     +L
Sbjct: 285 -TTTHISLDHHSMTLTPDEVK---------SLLLKY----------------LDCRPQDL 318

Query: 438 LNEAKNSEEKAKKAMVDAARLADEL-RAEQ-DHAQTQEKLRKALETQIKELQIRLDEAEN 495
             E   +  +   +++ A  + D L   +   H    +KL   +E+ +      L+ AE 
Sbjct: 319 PREVLTTNPRR-LSII-AESIRDGLATWDNWKHVNC-DKLTTIIESSLNV----LEPAEY 371

Query: 496 NAL--------KGGK---KAIQKL-----EQRVRELENELDGEQRRHADAQKNLRKTERR 539
             +                 +  +     +  V  + N+L     +++  +K  +++   
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL----HKYSLVEKQPKESTIS 427

Query: 540 IKELSF----QAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAK------- 588
           I  +      + E +   H     +VD      KT+     +++++    L +       
Sbjct: 428 IPSIYLELKVKLENEYALHRS---IVDHYNIP-KTF-----DSDDLIPPYLDQYFYSHIG 478

Query: 589 --FRKAQQELEEAEERA---DLA--EQAVSKIRTKGGSVARGSSPLKLVCSVTFCRQ-IT 640
              +  +        R    D    EQ   KIR    +     S L  +  + F +  I 
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 641 VQIT--SKLVLHL--FLLEEEFENTRKNHQRALDSMQASLEAEAKG-KAEALRMKKK 692
                  +LV  +  FL + E       +    D ++ +L AE +    EA +  ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKY---TDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 70/504 (13%), Positives = 134/504 (26%), Gaps = 172/504 (34%)

Query: 270 KDLLDQIGEGGRNIHEVEKARKRLEVE--KDELQAAL--EEAEAALEQ--EENKVLR--A 321
           KD+L             +      + +  +D  ++ L  EE +  +      +  LR   
Sbjct: 19  KDILS---------VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 322 QLELSQANAEAQKNIKRYQQQLKDV--------QTALEEEQRARDDAREQLGIVERRANA 373
            L   Q            Q+ +++V         + ++ EQR           +E+R + 
Sbjct: 70  TLLSKQEEM--------VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IEQR-DR 118

Query: 374 LQNELEESRQLLEQADRGRRQAETELADAHEQLNE----------------LSAQATSIS 417
           L N      Q+  + +  R Q   +L  A  +L                  ++       
Sbjct: 119 LYN----DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 418 AAKRKLEGE------------------LQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA 459
             + K++ +                  LQ L   +D       +     K          
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-------LRI 227

Query: 460 DELRAEQDHAQTQEKLRKALETQIKELQIRLDEAEN----NALKGGKKAIQKLEQRVREL 515
             ++AE       +     L        + L   +N    NA     K +  L  R +++
Sbjct: 228 HSIQAELRRLLKSKPYENCL--------LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQV 277

Query: 516 ENELDGEQRRHA---DAQKNLRKTER----------RIKELSFQAEEDRKNH-------- 554
            + L      H         L   E           R ++L     E    +        
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIA 334

Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQ----ELEEAEERADLAEQAV 610
           E ++D +         +K           +N  K     +     LE AE R      +V
Sbjct: 335 ESIRDGLATWDN----WKH----------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 611 ----SKIRTKGGSVARGSSPLKLVC------SVTFCRQITVQITSK-LV----------L 649
               + I            P  L+         +    +  ++    LV          +
Sbjct: 381 FPPSAHI------------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 650 H--LFLLEEEFENTRKNHQRALDS 671
                 L+ + EN    H+  +D 
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDH 452

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 66.1 bits (160), Expect = 3e-11
 Identities = 54/346 (15%), Positives = 117/346 (33%), Gaps = 16/346 (4%)

Query: 239 TELFRLKGAYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKD 298
           T+LF         Q      +R+   +   +  + +        +  +       +V  D
Sbjct: 358 TDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGD 417

Query: 299 ELQAALEEAEAALEQEE--NKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRA 356
            +  ++     ++ ++     V +   EL +     ++ +    + L + + A + + RA
Sbjct: 418 TVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDE-EEATDNDLRA 476

Query: 357 RDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSI 416
           +   R Q          L+ E    R +L++A +   Q +       + +  L      +
Sbjct: 477 KFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPEL 536

Query: 417 SAA-----------KRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE 465
           +AA             ++   L++L S+LDE+  E +  E   K    D         A+
Sbjct: 537 NAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQ 596

Query: 466 QDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRR 525
                 +      L+     L  ++ E      +G  K IQ   Q   +++   +    R
Sbjct: 597 DGVINEEALSVTELDRVYGGLTTKVQE-SLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655

Query: 526 HADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY 571
             +  KNL        EL    +E  K +  + +++ + Q K    
Sbjct: 656 E-EVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI 700

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 28/294 (9%), Positives = 74/294 (25%), Gaps = 35/294 (11%)

Query: 308  EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
             A +E+   + L ++   S     A + ++    +   ++                    
Sbjct: 751  LARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLE-------------------S 791

Query: 368  ERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGEL 427
                +++++      Q    A +  ++ E           E    +        K E  +
Sbjct: 792  RDFGDSIES-----VQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFV 846

Query: 428  QTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQ 487
                   +E+ +     E+  ++            +      Q   ++ K LE       
Sbjct: 847  APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS 906

Query: 488  IRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQA 547
            + L   E         A+Q   + +   + E    + +      ++      +       
Sbjct: 907  VYLGSNETGDS---ITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY----- 958

Query: 548  EEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEE 601
                   E  +       Q+    K   E  +      L + +K +        
Sbjct: 959  ---NGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 27/192 (14%), Positives = 51/192 (26%), Gaps = 12/192 (6%)

Query: 240  ELFRLKGAYEEAQEQLEAVRREN-----KNLADEVKDLLDQIGEGGRNIHEVEKARKRLE 294
            E+  L+  Y   Q +L  ++RE          +E+      + +  +   E  +   + +
Sbjct: 822  EVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ 881

Query: 295  VEKDELQAALEEAEAALEQEEN--KVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEE 352
             +   L          LE       V     E   +    Q  +K  +    + Q+   E
Sbjct: 882  KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQS--LE 939

Query: 353  EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ 412
             Q   D       + E   N +    E       Q   G    ++        L     +
Sbjct: 940  GQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTG---VKSSAETYKNTLLAELER 996

Query: 413  ATSISAAKRKLE 424
               I        
Sbjct: 997  LQKIEDLHHHHH 1008

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 9/171 (5%)

Query: 151  RKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAID 210
             K +  +A A  T   ++    ALEK +Q  A  +        +   +     +  K ++
Sbjct: 840  IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLE 899

Query: 211  KIIGEWKLK--VDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRE-NKNLAD 267
                   +    ++    + A Q + +N        +    ++   L ++  +  +   +
Sbjct: 900  NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959

Query: 268  EVKDLLDQIGEGGRNIH-----EVEKARKRLEVEKDELQAALEEAEAALEQ 313
             V +L ++                E  +  L  E + LQ  +E+       
Sbjct: 960  GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK-IEDLHHHHHH 1009

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562

 Score = 55.7 bits (133), Expect = 3e-08
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 503 KAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVD 562
           +  Q    R+ +L+N L   Q+ + D+          ++     A            + +
Sbjct: 57  EVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANN---RDNTYNRVSE 113

Query: 563 KLQQKIKTYKRQI-EEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVA 621
            L+ +I+  KR++ E+ + I  L     R    +++  E   D+      KIR+  GS +
Sbjct: 114 DLRSRIEVLKRKVIEKVQHIQLLQ-KNVRAQLVDMKRLEVDIDI------KIRSCRGSCS 166

Query: 622 RGSS 625
           R  +
Sbjct: 167 RALA 170

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 26/174 (14%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 31   LNQKVIALEKTKQRLATEVEDL---QLEVDRANAIANAAEK----KAKAIDKIIGEWKLK 83
            +N+K   LE+ +  L   ++ L   + +V           +    K +  ++ + +    
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967

Query: 84   VSLQLEVDRANAIANAAEKKAKAIDKIIGEWKLKGSLDFINTLYCLLFIPFLNEKSLKHP 143
               Q   +     A   + +    +K I   K+K   D             + +      
Sbjct: 1968 ---QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQ-LENAA 2023

Query: 144  YPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197
              L   + ++ A +   E++I +  ++   L +  +++ TE   ++ +VDR+ A
Sbjct: 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 29/263 (11%), Positives = 83/263 (31%), Gaps = 19/263 (7%)

Query: 459  ADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAENNALKGGKKAIQKLEQRVRELENE 518
              E     D    Q         + + +   L     +       ++  + Q + E    
Sbjct: 1822 GSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIR 1881

Query: 519  LDGEQRRHADA--QKNLRKTERRIKELSFQAEEDRKNHERM----------QDLVDKLQQ 566
            L   Q R      +  L    + +  ++ + ++  +    +          +  V  LQ 
Sbjct: 1882 LLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQV 1941

Query: 567  KIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAVSKIRTKGGSVARGSSP 626
             +    R+++   E A   L +  + QQ  E  ++ A   +  +           +  + 
Sbjct: 1942 SLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVR-------NKEIAV 1994

Query: 627  LKLVCSVTFCRQITVQITSKLVLHLFLLEEEFENTRKNHQRALDSMQASLEAEAKGKAEA 686
             K+       +        + V  L     E +  +      + +++ S+    +  A  
Sbjct: 1995 QKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054

Query: 687  LRMKKKLEADINELEIALDHANK 709
            +R  ++++ + ++++  +D +  
Sbjct: 2055 IRETEQIKTESSKVKNKVDRSIA 2077

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 11/134 (8%), Positives = 39/134 (29%), Gaps = 10/134 (7%)

Query: 250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA 309
              +     R        E++ LL Q             +   +E     ++      + 
Sbjct: 24  GIADFFNKYRLTTDGELLEIEGLLQQ----------ATNSTGSIEYLIQHIKTIYPSEKQ 73

Query: 310 ALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVER 369
            L Q   ++ +   ++ +     +  I  ++  ++ +              ++++  +E 
Sbjct: 74  TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133

Query: 370 RANALQNELEESRQ 383
                  +  E ++
Sbjct: 134 HCQEPCKDTAEIQE 147

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 51/465 (10%), Positives = 137/465 (29%), Gaps = 19/465 (4%)

Query: 138 KSLKHPYPLFFPRRKLQARLAEAEETIESLNQKVIALEKTKQRLATEVEDLQLEVDRANA 197
              +          K+ A   E E+ +E   +    L +  +R    +E+   E      
Sbjct: 226 SGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENTMQAM 285

Query: 198 IANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEA 257
                + +             +   L    +  Q + R  +   F          + +  
Sbjct: 286 QQKLEDFRDYRRLHK-PPKVQEKCQLEINFNTLQTKLRLSNRPAFM-----PSEGKMVSD 339

Query: 258 VRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEAALEQEENK 317
           +      L    K   + +    R +  ++   ++   +    ++  +  EA L+Q++ +
Sbjct: 340 INNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYE 399

Query: 318 V--LRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQ 375
              L     L + +   + ++  +Q +++ +    +E           +       NA  
Sbjct: 400 TATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV-------NARC 452

Query: 376 NELEESRQLLEQADRGRRQAETELADAHEQLNELSAQ-ATSISAAKRKLEGELQTLHSDL 434
            ++ +    L    + RR+A        E +++L  + A   +     +EG ++ L    
Sbjct: 453 QKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTF 512

Query: 435 DELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDEAE 494
                E       A +          +   E+            +           +   
Sbjct: 513 IVHTIEEIQGLTTAHEQFKA---TLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYT 569

Query: 495 NNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNH 554
               +      + + Q V   +  L  E  R    ++  ++   +   +    +   +  
Sbjct: 570 TITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEI 629

Query: 555 ERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEA 599
            R+   +    +    + RQ E++       + +     Q+++EA
Sbjct: 630 GRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEA 674

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Length = 341

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE-AQKNIKRYQQQLKD---VQTA 349
            ++ ++ +  ++E EA L +     LRAQ + ++A  + A+    R Q+  +     Q  
Sbjct: 61  VIDPEQAENQIKEVEATLME-----LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD 115

Query: 350 LEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQA 388
           L+         + Q+G ++ +    Q  L+ ++  L+  
Sbjct: 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYT 154

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 5/207 (2%)

Query: 249 EEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARK-RLEVEKDELQAALEEA 307
               +  +        L     D+        R    ++++ +  +E+  +  +AA +  
Sbjct: 617 TLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHE 676

Query: 308 EAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIV 367
              LEQE    L  Q  L Q+ AE  +  +  + +   +        +A  ++R +   +
Sbjct: 677 AQRLEQEARGRLERQKILDQSEAEKAR-KELLELEAMSMAVESTGNAKAEAESRAEAARI 735

Query: 368 ERRANALQNELEESRQLLE---QADRGRRQAETELADAHEQLNELSAQATSISAAKRKLE 424
           E   + LQ +L+     +E   + +R ++  E EL  A  QL    ++A  ++  + K  
Sbjct: 736 EGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKF 795

Query: 425 GELQTLHSDLDELLNEAKNSEEKAKKA 451
            E+                 E + K  
Sbjct: 796 KEMTEALGPGTIRDLAVAGPEMQVKLL 822

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 30/200 (15%), Positives = 69/200 (34%), Gaps = 3/200 (1%)

Query: 433 DLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE 492
            ++ +    +++ +++ +  ++    + E  A+ +  + +++ R  LE Q    Q   ++
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701

Query: 493 AENNALKGGKKAIQKLEQRVRELENELDGE-QRRHADAQKNLRKTERRIKELSFQAEEDR 551
           A    L+    ++        + E E   E  R   +      K + +   +  +AE +R
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761

Query: 552 KNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQA-- 609
               R  +L+    Q      +  + A   A                    A    Q   
Sbjct: 762 VKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821

Query: 610 VSKIRTKGGSVARGSSPLKL 629
           +  +  K   +  GSSP+ L
Sbjct: 822 LQSLGLKSTLITDGSSPINL 841

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 7/184 (3%)

Query: 247 AYEEAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEE 306
           + E   ++     + +  LA E+     +           ++AR RLE +K   Q+  E+
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701

Query: 307 AEAALEQEENKVLRAQ-LELSQANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLG 365
           A   L + E   +  +    ++A AE++    R + +   +Q  L+ +  A +   E   
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL-- 759

Query: 366 IVERRANALQNELEESRQLLE-QADRGRRQAETELADAHEQLNELSAQAT-SISAAKRKL 423
             ER     + EL  +R  LE +  + ++ A  E     E    L       ++ A  ++
Sbjct: 760 --ERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEM 817

Query: 424 EGEL 427
           + +L
Sbjct: 818 QVKL 821

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683

 Score = 42.6 bits (99), Expect = 5e-04
 Identities = 39/278 (14%), Positives = 91/278 (32%), Gaps = 13/278 (4%)

Query: 298 DELQAALEEAEAALEQEENKVLRAQLELSQANAEAQKNIKRYQQQLKDVQTALEEEQRAR 357
             L+    E  A             L               +  Q    ++    +   +
Sbjct: 36  QWLEKQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQ 95

Query: 358 DDAREQLGIVERRANALQNELEESRQLLEQADR--GRRQAETELADAHEQLNELSAQATS 415
           +D  +        +  + + L+E R++LE A R    +    +     ++  EL ++  +
Sbjct: 96  EDPIQM-------SMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRN 148

Query: 416 ISAAKRKLEGELQTLHSDLDELLNEAKNSE-EKAKKAMVDAARLADELRAEQDHAQTQEK 474
           +      +E E+++L    DE   + K  +  + +   V  +    E    +      + 
Sbjct: 149 VKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDN 208

Query: 475 LRKALETQIKELQIRLDEAENNALKG---GKKAIQKLEQRVRELENELDGEQRRHADAQK 531
            RK +  +I EL    +  +N  +       K  Q+           LD  Q       +
Sbjct: 209 KRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAE 268

Query: 532 NLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIK 569
           +L++  +++K+L    ++    H+ +      L  +  
Sbjct: 269 SLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTF 306

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A Length = 369

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 17/110 (15%)

Query: 294 EVEKDELQAALEEAEAALEQEENKVLRAQLELSQANAE-AQKNIKRYQQQLKDVQTALEE 352
           E++       L   +AAL        +AQL   +   + A  N +R  +      T+L+ 
Sbjct: 62  EIDSTTQINTLNTRKAALAS-----YQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDT 116

Query: 353 EQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA 402
                + A+  L       N  + E++  ++ ++QA+     AET L   
Sbjct: 117 ----LNTAKATL-------NNAKAEMDVVQENIKQAEIEVNTAETNLGYT 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	721
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.18
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.93
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.9
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.68
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.52
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.18
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.09
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.08
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.77
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.53
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.18
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.02
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.69
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.52
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.4
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.36
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.26
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.88
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	94.84
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.75
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.51
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	94.04
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.21
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	92.78
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	92.45
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.33
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	92.1
3bas_A	89	Myosin heavy chain, striated muscle/general contro	92.05
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.62
3bas_A	89	Myosin heavy chain, striated muscle/general contro	90.76
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.59
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.09
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	88.24
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	88.17
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	88.14
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	87.29
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	85.32
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	83.73
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	83.28
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	80.3
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	80.21
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.16

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.18  E-value=2.7e-06  Score=85.64  Aligned_cols=16  Identities=19%  Similarity=0.084  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy4651         294 EVEKDELQAALEEAEA  309 (721)
Q Consensus       294 e~e~~~l~~~le~~~~  309 (721)
                      ...+..++..++.+..
T Consensus         5 ~~~~~~l~~~~~~~~~   20 (284)
T 1c1g_A            5 KKKMQMLKLDKENALD   20 (284)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHH
Confidence            3334444444444433

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.17  E-value=2.2e-06  Score=86.37  Aligned_cols=9  Identities=11%  Similarity=0.353  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q psy4651         478 ALETQIKEL  486 (721)
Q Consensus       478 ~Le~e~~~L  486 (721)
                      .+...+..+
T Consensus       269 ~~~~~~~~~  277 (284)
T 1c1g_A          269 AISEELDHA  277 (284)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.93  E-value=2.3e-09  Score=129.17  Aligned_cols=134  Identities=23%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651         359 DAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL  438 (721)
Q Consensus       359 ~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~  438 (721)
                      .+......+...+..+...++.....+..+......++.++..+...+..+......+...+..++.++..+...++...
T Consensus      1029 ~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~ 1108 (1184)
T 1i84_S         1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444444444455555566666666666655566666666666666666666666555


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         439 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE  492 (721)
Q Consensus       439 ~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~  492 (721)
                      .....+...+..+..++..+..++.........+......|..++.+|...++.
T Consensus      1109 ~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S         1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555444444444455555555555555554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.90  E-value=3e-09  Score=128.25  Aligned_cols=104  Identities=17%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy4651         335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQAT  414 (721)
Q Consensus       335 ~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~  414 (721)
                      .+..+..++..+...++.....+..+......+...+..+..++.++...+..+......++.++..+...++.......
T Consensus      1033 ~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~ 1112 (1184)
T 1i84_S         1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555545555555555566666666655555555666666666666666666655555


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHH
Q psy4651         415 SISAAKRKLEGELQTLHSDLDELL  438 (721)
Q Consensus       415 ~l~~~~~~le~el~~lk~~le~~~  438 (721)
                      .+...+..+..++..+..++....
T Consensus      1113 ~le~~l~~Le~eie~L~eeLee~~ 1136 (1184)
T 1i84_S         1113 NALKKIRELESHISDLQEDLESEK 1136 (1184)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.68  E-value=0.017  Score=50.85  Aligned_cols=64  Identities=11%  Similarity=0.142  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHH
Q psy4651         372 NALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLD  435 (721)
Q Consensus       372 ~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le  435 (721)
                      ..+..-+-++...+..+...+..|+.++..|+..|+.....+......+..++..+..+..+++
T Consensus        44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~  107 (168)
T 3o0z_A           44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVK  107 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334434444444444455555555555555444444444434444444444433333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.52  E-value=0.042  Score=48.42  Aligned_cols=72  Identities=24%  Similarity=0.380  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         331 EAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADA  402 (721)
Q Consensus       331 ~~~~~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l  402 (721)
                      .+......|+.++..|++.++...+.+......+..++.++..|..+++.++..+..+...++.|...+..+
T Consensus        59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l  130 (168)
T 3o0z_A           59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS  130 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455677778888888888888888888888899999999999999988877766555555544443333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.18  E-value=0.13  Score=46.63  Aligned_cols=83  Identities=13%  Similarity=0.199  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy4651         387 QADRGRRQAETELADAHEQLNELSAQ----ATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL  462 (721)
Q Consensus       387 ~~~~~~~~l~~el~~l~~~l~~~~~~----~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l  462 (721)
                      .+......+..+++.++..+......    ++.++..+..+......++..+-+.....+.++...+....-+.++...+
T Consensus        60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl  139 (189)
T 2v71_A           60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL  139 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence            33333344444444444444433322    44444444444455555555555555555555555555544444444444


Q ss_pred             HHHHHHH
Q psy4651         463 RAEQDHA  469 (721)
Q Consensus       463 ~~~~~~~  469 (721)
                      ...-.+.
T Consensus       140 n~aiEr~  146 (189)
T 2v71_A          140 NQAIERN  146 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.09  E-value=0.12  Score=50.58  Aligned_cols=14  Identities=7%  Similarity=0.136  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy4651         179 QRLATEVEDLQLEV  192 (721)
Q Consensus       179 ~~le~ei~~l~~~l  192 (721)
                      ..++.++..+...+
T Consensus        35 ~~le~~~~~l~~~~   48 (256)
T 3na7_A           35 DKALNDKEAKNKAI   48 (256)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.08  E-value=0.16  Score=45.96  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=2.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy4651         471 TQEKLRKALETQIKELQIRLDE  492 (721)
Q Consensus       471 ~le~~k~~Le~e~~~L~~~l~~  492 (721)
                      .+.-...+|..++.||...+.-
T Consensus       158 ~l~~~~QRLkdE~rDLk~El~v  179 (189)
T 2v71_A          158 SLLVSVQRLKDEARDLRQELAV  179 (189)
T ss_dssp             HHHCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455677777777776663

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.77  E-value=0.15  Score=43.80  Aligned_cols=103  Identities=23%  Similarity=0.394  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy4651         335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLE-------QADRGRRQAETELADAHEQLN  407 (721)
Q Consensus       335 ~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~-------~~~~~~~~l~~el~~l~~~l~  407 (721)
                      .++.+..++..++..+......+..++.....+..+...|..++..-+..+.       .+...+..|+..+.++..+++
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle   93 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE   93 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555544444444444444433333322       223334555566666666666


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhhHHHH
Q psy4651         408 ELSAQATSISAAKRKLEGELQTLHSDLDEL  437 (721)
Q Consensus       408 ~~~~~~~~l~~~~~~le~el~~lk~~le~~  437 (721)
                      +.......+....++++.++..++..+++.
T Consensus        94 eeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           94 DEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.53  E-value=0.31  Score=41.74  Aligned_cols=60  Identities=20%  Similarity=0.364  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         250 EAQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEVEKARKRLEVEKDELQAALEEAEA  309 (721)
Q Consensus       250 ~~~~~~e~~~~~~~~l~~e~~~l~~~l~~~~~~~~~l~~~~~~le~e~~~l~~~le~~~~  309 (721)
                      +.......+......|...+.++...+++.......+...+..++.++..++.++++++.
T Consensus        66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455556666777777777777777777778888888888888888888777653

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.18  E-value=0.59  Score=40.94  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy4651         188 LQLEVDRANAIANAAEKKAKAIDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEAQEQLEAVRRENKNLAD  267 (721)
Q Consensus       188 l~~~le~~~~~~~~~e~~~~~le~~l~e~~~~~~~~~~~~~~~~~~~~~le~e~~~l~~ele~~~~~~e~~~~~~~~l~~  267 (721)
                      +..+|+........++.++..|+..+..+...+..+...-+........++..|..|...+.......+.+...+..|..
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445544444455555555556556555555555544444444455666677777777777777777777777777777


Q ss_pred             HHHHHHHHHhhccc
Q psy4651         268 EVKDLLDQIGEGGR  281 (721)
Q Consensus       268 e~~~l~~~l~~~~~  281 (721)
                      .+++|...+.....
T Consensus       106 ~id~lEd~L~~~Ke  119 (155)
T 2efr_A          106 SIDDLEDELYAQKL  119 (155)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776664333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.69  E-value=3.7  Score=53.75  Aligned_cols=95  Identities=11%  Similarity=0.126  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4651         508 LEQRVRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLA  587 (721)
Q Consensus       508 ~~~~~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~  587 (721)
                      ++..+..++.++......+...+..+..++..+..++.+.+....+...++.++......+....+-+..+..+..++..
T Consensus      2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A         2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence            34456666666666666666667777777777777777777777666677777777776666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHH
Q psy4651         588 KFRKAQQELEEAEER  602 (721)
Q Consensus       588 ~~~~l~~~l~e~e~~  602 (721)
                      ....+...+..+-.+
T Consensus      2092 ~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A         2092 QSENFNTQMSTVVGD 2106 (3245)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHH
Confidence            666666655554433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.52  E-value=0.5  Score=37.38  Aligned_cols=17  Identities=29%  Similarity=0.231  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy4651         475 LRKALETQIKELQIRLD  491 (721)
Q Consensus       475 ~k~~Le~e~~~L~~~l~  491 (721)
                      ....++..+..|..+|.
T Consensus        77 e~~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           77 EKYAIEILNKRLTEQLR   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            33344444444444444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.40  E-value=1.3  Score=38.85  Aligned_cols=44  Identities=32%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         422 KLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAE  465 (721)
Q Consensus       422 ~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~  465 (721)
                      .++.+|..+..++.+.....+.++..+.++...+..+...+...
T Consensus        74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~  117 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ  117 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.36  E-value=5.2  Score=52.50  Aligned_cols=89  Identities=11%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy4651         346 VQTALEEEQRARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEG  425 (721)
Q Consensus       346 l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~  425 (721)
                      ++.++..+..........+...+..+..+...+..++..++.....+..++.+++....++.....-+..|.....+=..
T Consensus      2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A         2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence            34444444444444444555555555666666666666666666666666666666666666555555444444444444


Q ss_pred             HHHHHHhhH
Q psy4651         426 ELQTLHSDL  434 (721)
Q Consensus       426 el~~lk~~l  434 (721)
                      .+..+...+
T Consensus      2092 ~~~~l~~~~ 2100 (3245)
T 3vkg_A         2092 QSENFNTQM 2100 (3245)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.26  E-value=1.4  Score=38.42  Aligned_cols=42  Identities=17%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         449 KKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL  490 (721)
Q Consensus       449 ~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l  490 (721)
                      .....++..|...+...+..+...+..+..++.++++|...|
T Consensus        54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL   95 (154)
T 2ocy_A           54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   95 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777888888888888888999999999999887655

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.88  E-value=0.75  Score=54.40  Aligned_cols=17  Identities=12%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHH
Q psy4651         150 RRKLQARLAEAEETIES  166 (721)
Q Consensus       150 ~k~l~~~l~~l~~~le~  166 (721)
                      +..|+..+.+++..++.
T Consensus       923 ~~~LE~kl~eLq~rL~~  939 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDE  939 (1080)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=94.84  E-value=0.45  Score=37.31  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4651         355 RARDDAREQLGIVERRANALQNELEESRQLLEQADRGRRQAETELADAHEQLNELSAQATSISAAKRKLEGELQTLH  431 (721)
Q Consensus       355 ~~~~~~~~~~~~l~~~~~~l~~ele~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk  431 (721)
                      +.+..+......+.-++..+...++.++..++.....|..++.++..++..+++..-.+..|+.++..+..+|.-++
T Consensus         7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A            7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444445555566677777788888888878888888888888888888887777777777777777766654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.51  E-value=1.1  Score=52.89  Aligned_cols=21  Identities=19%  Similarity=0.204  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy4651         288 KARKRLEVEKDELQAALEEAE  308 (721)
Q Consensus       288 ~~~~~le~e~~~l~~~le~~~  308 (721)
                      .....|+.+...|+.++++++
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444454444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.04  E-value=2.8  Score=36.49  Aligned_cols=9  Identities=11%  Similarity=0.416  Sum_probs=3.2

Q ss_pred             HHHhHHHHH
Q psy4651         346 VQTALEEEQ  354 (721)
Q Consensus       346 l~~~lee~~  354 (721)
                      |...+.+..
T Consensus        63 L~~~l~~E~   71 (154)
T 2ocy_A           63 LREDIAKEN   71 (154)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.21  E-value=2.5  Score=33.39  Aligned_cols=57  Identities=14%  Similarity=0.273  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         434 LDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRL  490 (721)
Q Consensus       434 le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l  490 (721)
                      |+.....+..++..+.....++..|...+...+..+..++..+..++.++++|...|
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444445556666677777777788888888888888888888887655

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.78  E-value=3.6  Score=35.07  Aligned_cols=16  Identities=6%  Similarity=0.337  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHhHH
Q psy4651         336 IKRYQQQLKDVQTALE  351 (721)
Q Consensus       336 ~~~l~~~l~~l~~~le  351 (721)
                      +..++.++..++..+.
T Consensus        84 i~~lE~eL~~~r~e~~   99 (129)
T 3tnu_B           84 LAELEEALQKAKQDMA   99 (129)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHH
Confidence            3334444444433333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=92.45  E-value=1.9  Score=33.77  Aligned_cols=56  Identities=14%  Similarity=0.299  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Q psy4651         400 ADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDA  455 (721)
Q Consensus       400 ~~l~~~l~~~~~~~~~l~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~  455 (721)
                      .+|+.++..+......+...+..+...+.+++.+++.....+..++..+..+...+
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv   58 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV   58 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            45666666666677777777777777777788888777666665555444444433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=92.33  E-value=2.9  Score=36.40  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy4651         395 AETELADAHEQLNELSAQATSISAAKRKLEGELQTL  430 (721)
Q Consensus       395 l~~el~~l~~~l~~~~~~~~~l~~~~~~le~el~~l  430 (721)
                      ++.+|+...++++.....+..|+..++.+...+..+
T Consensus        85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL  120 (147)
T 2b9c_A           85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSL  120 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333333333333333333333333333333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.10  E-value=3.6  Score=35.18  Aligned_cols=16  Identities=25%  Similarity=0.447  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHhHH
Q psy4651         336 IKRYQQQLKDVQTALE  351 (721)
Q Consensus       336 ~~~l~~~l~~l~~~le  351 (721)
                      +..++.++..++..+.
T Consensus        86 i~~lE~eL~~~r~em~  101 (131)
T 3tnu_A           86 IGSVEEQLAQLRCEME  101 (131)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=92.05  E-value=3.2  Score=32.67  Aligned_cols=73  Identities=14%  Similarity=0.173  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         419 AKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       419 ~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~  491 (721)
                      .+..++.++..++..+.........++.....+..+..+|..++......+..|...+..|+..+.++..++.
T Consensus        15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444555555555555555555555555555555555555555566666666677777777777777766554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.62  E-value=4.6  Score=32.65  Aligned_cols=71  Identities=21%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy4651         513 RELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA  583 (721)
Q Consensus       513 ~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~  583 (721)
                      ..|..+.+........+...+..++.....+...+..+.+.+..+.++++.+...+......++.......
T Consensus        12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~   82 (101)
T 3u1c_A           12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA   82 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333444444444444444444444444444444444444444444443333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=90.76  E-value=5  Score=31.58  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651         335 NIKRYQQQLKDVQTALEEEQRARDDAREQLGIVERRANALQNE  377 (721)
Q Consensus       335 ~~~~l~~~l~~l~~~lee~~~~~~~~~~~~~~l~~~~~~l~~e  377 (721)
                      .+..+..++..++..+......+.+++.....+..+...|..+
T Consensus        15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q   57 (89)
T 3bas_A           15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS   57 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666665555555555555444444444444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.59  E-value=5.9  Score=32.03  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4651         512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRK  591 (721)
Q Consensus       512 ~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~  591 (721)
                      +..|..+.+........+...+..++.....+...+..+.+.+..+.+.++.+...+......++.........++.+..
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas   90 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS   90 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444333333333333


Q ss_pred             H
Q psy4651         592 A  592 (721)
Q Consensus       592 l  592 (721)
                      |
T Consensus        91 L   91 (101)
T 3u59_A           91 L   91 (101)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.09  E-value=6.8  Score=31.98  Aligned_cols=26  Identities=8%  Similarity=0.165  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4651         336 IKRYQQQLKDVQTALEEEQRARDDAR  361 (721)
Q Consensus       336 ~~~l~~~l~~l~~~lee~~~~~~~~~  361 (721)
                      +..|+.++..++...+.....+.+++
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iReLE   62 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVRELE   62 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=88.24  E-value=8.9  Score=30.88  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         447 KAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLD  491 (721)
Q Consensus       447 ~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~  491 (721)
                      .+.-+..++.--..++...+..+..+..++..|..++..|+.++.
T Consensus        63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            455677777778888888888888888888888888877776554

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=88.17  E-value=9.5  Score=31.12  Aligned_cols=15  Identities=20%  Similarity=0.286  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHH
Q psy4651         370 RANALQNELEESRQL  384 (721)
Q Consensus       370 ~~~~l~~ele~~~~~  384 (721)
                      .+..|..+++.|+..
T Consensus        11 ~~~~L~~E~e~~k~K   25 (111)
T 2v66_B           11 DNQRLKYEVEALKEK   25 (111)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344444444433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.14  E-value=4.7  Score=34.06  Aligned_cols=49  Identities=18%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         170 KVIALEKTKQRLATEVEDLQLEVDRANAIANAAEKKAKAIDKIIGEWKL  218 (721)
Q Consensus       170 ~~~~le~~~~~le~ei~~l~~~le~~~~~~~~~e~~~~~le~~l~e~~~  218 (721)
                      .+..+.........++..|...+......+..++.....++.++.++..
T Consensus        33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa   81 (135)
T 2e7s_A           33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   81 (135)
T ss_dssp             HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444555556666666666655555555555555555555543

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.29  E-value=1.9  Score=36.43  Aligned_cols=8  Identities=0%  Similarity=0.277  Sum_probs=2.9

Q ss_pred             HHHHhHHH
Q psy4651         345 DVQTALEE  352 (721)
Q Consensus       345 ~l~~~lee  352 (721)
                      .|...+.+
T Consensus        50 ~L~~~l~e   57 (135)
T 2e7s_A           50 RLREDIAK   57 (135)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=85.32  E-value=13  Score=29.69  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4651         517 NELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAE  579 (721)
Q Consensus       517 ~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~  579 (721)
                      .++......-..+...+..++..-..+...+..+..+...+...-..+-.....+..++-++.
T Consensus        11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~   73 (96)
T 3q8t_A           11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD   73 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333344333334444444333333333333333333333443333333

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=83.73  E-value=12  Score=28.22  Aligned_cols=60  Identities=17%  Similarity=0.307  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         512 VRELENELDGEQRRHADAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTY  571 (721)
Q Consensus       512 ~~~l~~ele~~~~~~~~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~  571 (721)
                      +.+|++.|+...+....++.++.+.+..+-.+..+|.+....+..+..++..+..++..+
T Consensus        12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel   71 (81)
T 1wt6_A           12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777777777777778888888887777777777777777666666555555554443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=83.28  E-value=22  Score=30.82  Aligned_cols=9  Identities=11%  Similarity=0.309  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q psy4651         185 VEDLQLEVD  193 (721)
Q Consensus       185 i~~l~~~le  193 (721)
                      +..|...+.
T Consensus        54 ~~~lE~qLk   62 (147)
T 2b9c_A           54 MEIQEIQLK   62 (147)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=80.30  E-value=19  Score=28.14  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         417 SAAKRKLEGELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQIRLDE  492 (721)
Q Consensus       417 ~~~~~~le~el~~lk~~le~~~~~~~~~e~~~~~l~~e~~~l~~~l~~~~~~~~~le~~k~~Le~e~~~L~~~l~~  492 (721)
                      +..+...+..|..++..+.......    +.+.-+..++.--..++..+++-+..+...+..|...+.-|..++..
T Consensus        15 EeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~   86 (94)
T 3jsv_C           15 EEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK   86 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3333444445555554443322222    34456777777778888888888888888888888777777766553

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=80.21  E-value=21  Score=28.45  Aligned_cols=87  Identities=15%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         528 DAQKNLRKTERRIKELSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAE  607 (721)
Q Consensus       528 ~~~~~~~~l~~~l~el~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~lee~~~~~~~l~~~~~~l~~~l~e~e~~~~~~e  607 (721)
                      .+...+..+...-..+...|..+.+....+..++..+......+...-..+=...+.+......+...+..+...+....
T Consensus         8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~   87 (96)
T 3q8t_A            8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ   87 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555554444444444444444555555555555555555


Q ss_pred             HHHHHHH
Q psy4651         608 QAVSKIR  614 (721)
Q Consensus       608 ~~~~~l~  614 (721)
                      ..++.|+
T Consensus        88 ~qLdkL~   94 (96)
T 3q8t_A           88 MQLDKLK   94 (96)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            5555544

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=80.16  E-value=17  Score=27.61  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4651         164 IESLNQKVIALEKTKQRLATEVEDLQLEVDRA  195 (721)
Q Consensus       164 le~~~~~~~~le~~~~~le~ei~~l~~~le~~  195 (721)
                      ++.++.++..+-..+.-++.++++|+..-..+
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L   39 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSL   39 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00