Psyllid ID: psy4653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI
Secondary Structure (PSIPRED)
ccccccEEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEEEccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccccEEEccccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEccccHHHHHHcccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEcccc
Coil and Loop (DISEMBL)
MPLRLDIKRKLTarsdrvkccdlhptepwmLASLYNGHVHVWnhetnqnvksfevcdlpvraakfvprknwivtgsddmQVCVFNYntlerfhsfeahsDYVRcvavhptqpflltssDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVInpkdnntfasaslDRTVKVWqlgsaspnftleghekgvncvdyyhggdkpylisgaddRLVKIWDYQNKTCVQTLESGI
Flexible Loop (DISEMBL)
mplrldikrkltarsdrvkccDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFvprknwivtgsddmQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAspnftleghekGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI
Low Complexity Region (SEG)
MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI
Disordered region (IsUnstruct)
**************SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ******
Disordered Region (DISOPRED)
MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI
Disordered Region (DISEMBL)
MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI
Disordered Region (DISPRO)
***RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
P35605	906	Coatomer subunit beta' OS	yes	N/A	0.751	0.189	0.872	1e-122
Q5R664	906	Coatomer subunit beta' OS	yes	N/A	0.751	0.189	0.872	1e-122
O55029	905	Coatomer subunit beta' OS	yes	N/A	0.751	0.190	0.872	1e-122
P35606	906	Coatomer subunit beta' OS	yes	N/A	0.751	0.189	0.872	1e-122
Q4R4I8	906	Coatomer subunit beta' OS	N/A	N/A	0.751	0.189	0.872	1e-122
O35142	905	Coatomer subunit beta' OS	yes	N/A	0.751	0.190	0.863	1e-120
O62621	914	Coatomer subunit beta' OS	yes	N/A	0.790	0.198	0.850	1e-120
Q20168	1000	Probable coatomer subunit	yes	N/A	0.986	0.226	0.783	1e-112
Q6H8D5	910	Coatomer subunit beta'-2	yes	N/A	0.781	0.196	0.704	1e-102
Q6H8D6	910	Putative coatomer subunit	yes	N/A	0.790	0.198	0.696	1e-101

>sp|P35605|COPB2_BOVIN Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 198/227 (87%), Positives = 211/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61  RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.
Bos taurus (taxid: 9913)

>sp|Q5R664|COPB2_PONAB Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 198/227 (87%), Positives = 211/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61  RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Pongo abelii (taxid: 9601)

>sp|O55029|COPB2_MOUSE Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 198/227 (87%), Positives = 211/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61  RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Mus musculus (taxid: 10090)

>sp|P35606|COPB2_HUMAN Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 198/227 (87%), Positives = 211/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61  RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Homo sapiens (taxid: 9606)

>sp|Q4R4I8|COPB2_MACFA Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 198/227 (87%), Positives = 211/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61  RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Macaca fascicularis (taxid: 9541)

>sp|O35142|COPB2_RAT Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 196/227 (86%), Positives = 209/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTA SDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61  RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQT E 
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTPEG 227

This coatomer complex protein, essential for Golgi budding and vesicular trafficking, is a selective binding protein (RACK) for protein kinase C, epsilon type. It binds to Golgi membranes in a GTP-dependent manner.

Rattus norvegicus (taxid: 10116)

>sp|O62621|COPB2_DROME Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 193/227 (85%), Positives = 209/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPL+LDIKR+LT+RSDRVKC DLHP EPWML +LYNGHVH+ N+E  Q VK FEVCD+PV
Sbjct: 1   MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           R+A+FV RKNWI+TGSDDMQ+ VFNYNTLE+ HSFEAHSDY+RC+AVHPTQP +LTSSDD
Sbjct: 61  RSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEK WACQ+VFEGHTHYVMQIV NPKDNNTFASASLDRTVKVWQLGS   NFT
Sbjct: 121 MLIKLWNWEKMWACQRVFEGHTHYVMQIVFNPKDNNTFASASLDRTVKVWQLGSNFANFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' OS=Caenorhabditis elegans GN=F38E11.5 PE=3 SV=3

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 177/226 (78%), Positives = 203/226 (89%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLD+KRKL ARSDRVKC DLHP E W+LA+LYNG+VH+WN+ET   VKSFEVCD+PV
Sbjct: 1   MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFVPRK+W+VTGSDDM + VFNYNTLER H FEAHSDY+R + VHPT P++++SSDD
Sbjct: 61  RAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           ML+K+W+W+  WA +Q FEGHTHYVMQI INPKDNNTFA+ASLD+TVKVWQ GS  PNFT
Sbjct: 121 MLVKMWDWDNKWAMKQSFEGHTHYVMQIAINPKDNNTFATASLDKTVKVWQFGSNVPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           LEGHEKGVNCVDYYHGG+KPY+ISGADD LVKIWDYQNKTCVQTL+
Sbjct: 181 LEGHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLD 226

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6H8D5|COB22_ORYSJ Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 160/227 (70%), Positives = 194/227 (85%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKL  RS+RVK  DLHPTEPW+L+SLY+G V +WN++T   VKSFEV +LPV
Sbjct: 1   MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           R++KF+ RK WIV G+DDM + V+NYNT+++   FEAH+DY+RCVAVHPTQPF+L+SSDD
Sbjct: 61  RSSKFIARKQWIVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W C Q+FEGH+HYVMQ+  NPKD NTFASASLDRTVKVW LGS  PNFT
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           L+GH KGVNCVDY+ GGD+PYLI+G+DD+  K+WDYQ K+CVQTLE 
Sbjct: 181 LDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEG 227

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H8D6|COB23_ORYSJ Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 193/227 (85%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKL  RS+R K  DLHPTEPW+L+SLY+G V +WN++T   VKSFEV +LPV
Sbjct: 1   MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           R++KF+ RK W+V G+DDM + V+NYNT+++   FEAH+DY+RCVAVHPTQPF+L+SSDD
Sbjct: 61  RSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W C Q+FEGH+HYVMQ+  NPKD NTFASASLDRTVKVW LGS  PNFT
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           L+GH KGVNCVDY+ GGD+PYLI+G+DD+  K+WDYQ K+CVQTLE 
Sbjct: 181 LDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEG 227

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
427788645	927	hypothetical protein [Rhipicephalus pulc	0.781	0.193	0.889	1e-123
241701693	927	vesicle coat complex COPI, beta' subunit	0.781	0.193	0.885	1e-122
242008111	989	Coatomer subunit beta', putative [Pedicu	0.759	0.175	0.881	1e-122
321478188	950	hypothetical protein DAPPUDRAFT_220713 [	0.777	0.187	0.885	1e-122
345496540	932	PREDICTED: coatomer subunit beta' [Nason	0.790	0.194	0.881	1e-122
270007308	904	hypothetical protein TcasGA2_TC013867 [T	0.790	0.200	0.854	1e-121
307180125	938	Coatomer subunit beta' [Camponotus flori	0.991	0.242	0.876	1e-121
91082013	910	PREDICTED: similar to coatomer [Triboliu	0.790	0.198	0.850	1e-121
193664638	935	PREDICTED: coatomer subunit beta'-like [	0.790	0.193	0.867	1e-120
334329688	913	PREDICTED: coatomer subunit beta'-like [	0.751	0.188	0.872	1e-120

>gi|427788645|gb|JAA59774.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 202/227 (88%), Positives = 213/227 (93%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPL+LD+KRKL ARSDRVKC DLHPTEPWMLASLYNG+VHVWN E+ Q VK+FEVCDLPV
Sbjct: 1   MPLKLDVKRKLLARSDRVKCVDLHPTEPWMLASLYNGNVHVWNCESQQLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFVPRKNW++TGSDDMQV VFNYNTLER H FEAHSDY+R + VHPTQPF+LTSSDD
Sbjct: 61  RAAKFVPRKNWVITGSDDMQVRVFNYNTLERVHMFEAHSDYIRSIVVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEK WAC QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS +PNFT
Sbjct: 121 MLIKLWNWEKQWACTQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSVTPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241701693|ref|XP_002413181.1| vesicle coat complex COPI, beta' subunit, putative [Ixodes scapularis] gi|215506995|gb|EEC16489.1| vesicle coat complex COPI, beta' subunit, putative [Ixodes scapularis]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/227 (88%), Positives = 213/227 (93%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPL+LD+KRKL ARSDRVKC DLHPTEPWMLASLYNG+VHVWN E+ Q VK+FEVCDLPV
Sbjct: 1   MPLKLDVKRKLLARSDRVKCVDLHPTEPWMLASLYNGNVHVWNCESQQLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFVPRKNW++TGSDDMQV VFNYNTLER H FEAHSDY+R + VHPTQPF+LTSSDD
Sbjct: 61  RAAKFVPRKNWVITGSDDMQVRVFNYNTLERVHMFEAHSDYIRSIVVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEK WAC QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS +PNFT
Sbjct: 121 MLIKLWNWEKQWACTQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSVTPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           L+GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LDGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008111|ref|XP_002424856.1| Coatomer subunit beta', putative [Pediculus humanus corporis] gi|212508406|gb|EEB12118.1| Coatomer subunit beta', putative [Pediculus humanus corporis]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 200/227 (88%), Positives = 214/227 (94%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
            PLRLDIKRKLT R+DRVKC DLHPTEPW+L+SLYNG V VWNHET Q  K+FEVCDLPV
Sbjct: 8   FPLRLDIKRKLTTRTDRVKCVDLHPTEPWVLSSLYNGIVDVWNHETRQLTKTFEVCDLPV 67

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           R+A+FVPRKNW++TGSDDMQV VFNYNTLER H+FEAHSDYVRC+AVHPTQP++LTSSDD
Sbjct: 68  RSARFVPRKNWVITGSDDMQVRVFNYNTLERVHAFEAHSDYVRCIAVHPTQPYILTSSDD 127

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEK WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS++PNFT
Sbjct: 128 MLIKLWNWEKQWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSSTPNFT 187

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYHGGDKPYLISGADDR VKIWDYQNKTCVQTLE 
Sbjct: 188 LEGHEKGVNCVDYYHGGDKPYLISGADDRYVKIWDYQNKTCVQTLEG 234

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478188|gb|EFX89146.1| hypothetical protein DAPPUDRAFT_220713 [Daphnia pulex]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 201/227 (88%), Positives = 214/227 (94%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPL+LDIKR+LTARSDRVK  DLHPTEPWMLASLYNG+VH+WNHE+ Q +KSFEVCDLPV
Sbjct: 1   MPLKLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGNVHIWNHESQQIIKSFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RA KFVPRKNW+V+GSDDMQV VFNYNTL+R  +FEAHSDYVRC+AVHPTQPFLLTSSDD
Sbjct: 61  RAVKFVPRKNWVVSGSDDMQVRVFNYNTLDRVTAFEAHSDYVRCIAVHPTQPFLLTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           M IKLWNWEK WACQQVFEGHTHYVMQIVINPKDNNTFA+ASLDRTVKVWQLGS +PNFT
Sbjct: 121 MSIKLWNWEKNWACQQVFEGHTHYVMQIVINPKDNNTFATASLDRTVKVWQLGSNTPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYH GDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCVDYYHAGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496540|ref|XP_001603000.2| PREDICTED: coatomer subunit beta' [Nasonia vitripennis]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 200/227 (88%), Positives = 214/227 (94%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVKC DLHPTEPWML SLY G+V++WNHE+   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKCVDLHPTEPWMLCSLYQGNVNIWNHESQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           R+AKFVPRKNW+VTGSDDMQ+ VFNYNTLER HSFEAHSDYVRC+AVHPTQPF+LTSSDD
Sbjct: 61  RSAKFVPRKNWVVTGSDDMQIRVFNYNTLERVHSFEAHSDYVRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEK+W CQQVFEGHTHYVMQIV NPKDNNTFASASLDRTVKVWQLGS++ NFT
Sbjct: 121 MLIKLWNWEKSWLCQQVFEGHTHYVMQIVFNPKDNNTFASASLDRTVKVWQLGSSTANFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYHGG+KPYLISGADDR VKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCVDYYHGGEKPYLISGADDRYVKIWDYQNKTCVQTLEG 227

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007308|gb|EFA03756.1| hypothetical protein TcasGA2_TC013867 [Tribolium castaneum]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 194/227 (85%), Positives = 214/227 (94%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVKC DLHPTEPWML SLY+G+++VWNHE  Q VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKCVDLHPTEPWMLCSLYSGNINVWNHENQQLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFVPRKNW++ GSDDMQ+ VFNYNTL+R H+FEAHSDYVRC+ +HPTQP++LT SDD
Sbjct: 61  RAAKFVPRKNWVIAGSDDMQIRVFNYNTLDRVHAFEAHSDYVRCIVIHPTQPYILTGSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEKAWACQQVFEGH+HYVMQI INPKDNNTF SASLDRT+KVWQLG+++PNFT
Sbjct: 121 MLIKLWNWEKAWACQQVFEGHSHYVMQIAINPKDNNTFVSASLDRTLKVWQLGASTPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYHGGDKPY+ISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCVDYYHGGDKPYIISGADDRLVKIWDYQNKTCVQTLEG 227

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180125|gb|EFN68169.1| Coatomer subunit beta' [Camponotus floridanus]

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 199/227 (87%), Positives = 210/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVK  DLHPTEPWML SLY G+V++WNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLCSLYQGNVNIWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           R AKFVPRKNW++TGSDDMQ+ VFNYNTLER HSFEAHSDYVRC+AVHPTQPF+LTSSDD
Sbjct: 61  RTAKFVPRKNWVITGSDDMQIRVFNYNTLERVHSFEAHSDYVRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           M IKLWNWEK+W CQQVFEGHTHYVMQIV NPKDNNTFASASLDRTVKVWQLGS + NFT
Sbjct: 121 MWIKLWNWEKSWICQQVFEGHTHYVMQIVFNPKDNNTFASASLDRTVKVWQLGSPTANFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYHGGDKPYLISGADDR VKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRYVKIWDYQNKTCVQTLEG 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082013|ref|XP_969905.1| PREDICTED: similar to coatomer [Tribolium castaneum]

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 193/227 (85%), Positives = 214/227 (94%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           +PLRLDIKRKLTARSDRVKC DLHPTEPWML SLY+G+++VWNHE  Q VK+FEVCDLPV
Sbjct: 7   LPLRLDIKRKLTARSDRVKCVDLHPTEPWMLCSLYSGNINVWNHENQQLVKTFEVCDLPV 66

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFVPRKNW++ GSDDMQ+ VFNYNTL+R H+FEAHSDYVRC+ +HPTQP++LT SDD
Sbjct: 67  RAAKFVPRKNWVIAGSDDMQIRVFNYNTLDRVHAFEAHSDYVRCIVIHPTQPYILTGSDD 126

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEKAWACQQVFEGH+HYVMQI INPKDNNTF SASLDRT+KVWQLG+++PNFT
Sbjct: 127 MLIKLWNWEKAWACQQVFEGHSHYVMQIAINPKDNNTFVSASLDRTLKVWQLGASTPNFT 186

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYHGGDKPY+ISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 187 LEGHEKGVNCVDYYHGGDKPYIISGADDRLVKIWDYQNKTCVQTLEG 233

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193664638|ref|XP_001947746.1| PREDICTED: coatomer subunit beta'-like [Acyrthosiphon pisum]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 211/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVKC DLHP EPWMLASLYNG VH+WNHET   +KS+EVC+LPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKCVDLHPKEPWMLASLYNGTVHIWNHETATLIKSYEVCELPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAA+FV RKNWIVTGSDDMQ+ V NYNTLER H  +AHSDY+R +AVHP+QPF+LTSSDD
Sbjct: 61  RAARFVARKNWIVTGSDDMQLRVINYNTLERVHQLDAHSDYLRSIAVHPSQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLWNWEK WACQQVFEGHTHYVMQI+INPKDNNTFASASLDRTVKVWQLGS++PNFT
Sbjct: 121 MLIKLWNWEKQWACQQVFEGHTHYVMQIIINPKDNNTFASASLDRTVKVWQLGSSTPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNCVDYYH GDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCVDYYHAGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334329688|ref|XP_001375924.2| PREDICTED: coatomer subunit beta'-like [Monodelphis domestica]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/227 (87%), Positives = 211/227 (92%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
           MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct: 61  RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct: 121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 
Sbjct: 181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEG 227

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
UNIPROTKB|E1C016	913	COPB2 "Uncharacterized protein	0.986	0.247	0.876	2.2e-112
UNIPROTKB|P35605	906	COPB2 "Coatomer subunit beta'"	0.986	0.249	0.876	2.2e-112
UNIPROTKB|E2R667	906	COPB2 "Uncharacterized protein	0.986	0.249	0.876	2.2e-112
UNIPROTKB|P35606	906	COPB2 "Coatomer subunit beta'"	0.986	0.249	0.876	2.2e-112
UNIPROTKB|F1SL54	906	COPB2 "Uncharacterized protein	0.986	0.249	0.876	2.2e-112
MGI|MGI:1354962	905	Copb2 "coatomer protein comple	0.986	0.249	0.876	2.2e-112
ZFIN|ZDB-GENE-010724-7	934	copb2 "coatomer protein comple	0.986	0.241	0.858	3.3e-111
RGD|628746	905	Copb2 "coatomer protein comple	0.986	0.249	0.867	5.3e-111
FB|FBgn0025724	914	beta'Cop "beta'-coatomer prote	0.986	0.247	0.853	1.1e-110
WB|WBGene00009542	1000	F38E11.5 [Caenorhabditis elega	0.986	0.226	0.783	1.4e-103

UNIPROTKB|E1C016 COPB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 198/226 (87%), Positives = 211/226 (93%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct:    61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|P35605 COPB2 "Coatomer subunit beta'" [Bos taurus (taxid:9913)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 198/226 (87%), Positives = 211/226 (93%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct:    61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0005515 "protein binding" evidence=IPI

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS;TAS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0000139 "Golgi membrane" evidence=ISS

GO:0030126 "COPI vesicle coat" evidence=ISS;IDA

GO:0005080 "protein kinase C binding" evidence=ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|E2R667 COPB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 198/226 (87%), Positives = 211/226 (93%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct:    61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P35606 COPB2 "Coatomer subunit beta'" [Homo sapiens (taxid:9606)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 198/226 (87%), Positives = 211/226 (93%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct:    61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|F1SL54 COPB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 198/226 (87%), Positives = 211/226 (93%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct:    61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1354962 Copb2 "coatomer protein complex, subunit beta 2 (beta prime)" [Mus musculus (taxid:10090)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 198/226 (87%), Positives = 211/226 (93%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTARSDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct:    61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0000139 "Golgi membrane" evidence=ISO

GO:0005080 "protein kinase C binding" evidence=ISO

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISA;IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

ZFIN|ZDB-GENE-010724-7 copb2 "coatomer protein complex, subunit beta 2" [Danio rerio (taxid:7955)]

 Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
 Identities = 194/226 (85%), Positives = 211/226 (93%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTARSDRVK  DLHP+EPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTARSDRVKSVDLHPSEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RA+KFV RKNW++TG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQP++LTSSDD
Sbjct:    61 RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+WEK W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGH+KGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHDKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

RGD|628746 Copb2 "coatomer protein complex, subunit beta 2 (beta prime)" [Rattus norvegicus (taxid:10116)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 196/226 (86%), Positives = 209/226 (92%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLDIKRKLTA SDRVK  DLHPTEPWMLASLYNG V VWNHET   VK+FEVCDLPV
Sbjct:     1 MPLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFV RKNW+VTG+DDMQ+ VFNYNTLER H FEAHSDY+RC+AVHPTQPF+LTSSDD
Sbjct:    61 RAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLW+W+K W+C QVFEGHTHYVMQIVINPKDNN FASASLDRT+KVWQLGS+SPNFT
Sbjct:   121 MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNC+DYY GGDKPYLISGADDRLVKIWDYQNKTCVQT E
Sbjct:   181 LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTPE 226

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

FB|FBgn0025724 beta'Cop "beta'-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 193/226 (85%), Positives = 209/226 (92%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPL+LDIKR+LT+RSDRVKC DLHP EPWML +LYNGHVH+ N+E  Q VK FEVCD+PV
Sbjct:     1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             R+A+FV RKNWI+TGSDDMQ+ VFNYNTLE+ HSFEAHSDY+RC+AVHPTQP +LTSSDD
Sbjct:    61 RSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             MLIKLWNWEK WACQ+VFEGHTHYVMQIV NPKDNNTFASASLDRTVKVWQLGS   NFT
Sbjct:   121 MLIKLWNWEKMWACQRVFEGHTHYVMQIVFNPKDNNTFASASLDRTVKVWQLGSNFANFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE
Sbjct:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0030126 "COPI vesicle coat" evidence=NAS

GO:0048194 "Golgi vesicle budding" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

WB|WBGene00009542 F38E11.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 177/226 (78%), Positives = 203/226 (89%)

Query:     1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV 60
             MPLRLD+KRKL ARSDRVKC DLHP E W+LA+LYNG+VH+WN+ET   VKSFEVCD+PV
Sbjct:     1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPV 60

Query:    61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
             RAAKFVPRK+W+VTGSDDM + VFNYNTLER H FEAHSDY+R + VHPT P++++SSDD
Sbjct:    61 RAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDD 120

Query:   121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             ML+K+W+W+  WA +Q FEGHTHYVMQI INPKDNNTFA+ASLD+TVKVWQ GS  PNFT
Sbjct:   121 MLVKMWDWDNKWAMKQSFEGHTHYVMQIAINPKDNNTFATASLDKTVKVWQFGSNVPNFT 180

Query:   181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             LEGHEKGVNCVDYYHGG+KPY+ISGADD LVKIWDYQNKTCVQTL+
Sbjct:   181 LEGHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLD 226

GO:0006886 "intracellular protein transport" evidence=IEA;IMP

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0048599 "oocyte development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35605	COPB2_BOVIN	No assigned EC number	0.8722	0.7510	0.1898	yes	N/A
P35606	COPB2_HUMAN	No assigned EC number	0.8722	0.7510	0.1898	yes	N/A
P41811	COPB2_YEAST	No assigned EC number	0.5973	0.9825	0.2530	yes	N/A
O35142	COPB2_RAT	No assigned EC number	0.8634	0.7510	0.1900	yes	N/A
Q6H8D6	COB23_ORYSJ	No assigned EC number	0.6960	0.7903	0.1989	yes	N/A
Q6H8D5	COB22_ORYSJ	No assigned EC number	0.7048	0.7816	0.1967	yes	N/A
O42937	COPB2_SCHPO	No assigned EC number	0.6044	0.9606	0.2763	yes	N/A
O55029	COPB2_MOUSE	No assigned EC number	0.8722	0.7510	0.1900	yes	N/A
Q5R664	COPB2_PONAB	No assigned EC number	0.8722	0.7510	0.1898	yes	N/A
Q8L828	COB23_ARATH	No assigned EC number	0.6960	0.7903	0.1991	yes	N/A
Q20168	COPB2_CAEEL	No assigned EC number	0.7831	0.9868	0.226	yes	N/A
Q5VQ78	COB21_ORYSJ	No assigned EC number	0.6696	0.7816	0.1973	yes	N/A
Q54YD8	COPB2_DICDI	No assigned EC number	0.6872	0.9868	0.2248	yes	N/A
O62621	COPB2_DROME	No assigned EC number	0.8502	0.7903	0.1980	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	229
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-52
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-46
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-43
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	4e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	8e-04
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  169 bits (430), Expect = 6e-52
 Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 4/220 (1%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           +R L   +  V C    P    +     +G + VW+ ET + +++ +    PVR      
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
              ++ +GS D  + +++  T E   +   H+ YV  VA  P    L +SS D  IK+W+
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
            E    C     GHT +V  +  +P D    AS+S D T+K+W L +     TL GH   
Sbjct: 122 VETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           VN V +   G+K  L+S + D  +K+WD     C+ TL  
Sbjct: 180 VNSVAFSPDGEK--LLSSSSDGTIKLWDLSTGKCLGTLRG 217

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  153 bits (389), Expect = 7e-46
 Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 4/207 (1%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
           R LT  +  V      P    + +S  +  + VW+ ET + + +       V +  F P 
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146

Query: 69  KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
             ++ + S D  + +++  T +   +   H+  V  VA  P    LL+SS D  IKLW+ 
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD- 205

Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
                C     GH + V  +  +P D    AS S D T++VW L +     TL GH   V
Sbjct: 206 LSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264

Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWD 215
             + +    D   L SG+ D  ++IWD
Sbjct: 265 TSLAWS--PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  147 bits (372), Expect = 2e-43
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
           ++ R L   +  V+         ++ +   +  + +W+ ET + V++       V +  F
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF 101

Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
            P    + + S D  + V++  T +   +   H+D+V  VA  P   F+ +SS D  IKL
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
           W+  +   C     GHT  V  +  +P D     S+S D T+K+W L +     TL GHE
Sbjct: 162 WD-LRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219

Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            GVN V +   G    L SG++D  +++WD +   CVQTL 
Sbjct: 220 NGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  106 bits (264), Expect = 1e-26
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 8/227 (3%)

Query: 7   IKRKLTARSDRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
           + R L   S+ V      P    +   S  +G + +W+  T + + +      PV +  F
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 66  VPRKNW-IVTGSDDMQVCVFNYNTLERFHS-FEAHSDYVRCVAVHPTQPFLLTSSDDMLI 123
            P     I +GS D  + +++ +T +   S    HSD V   +  P    L + S D  I
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTI 265

Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTL 181
           +LW+   + +  +   GH+  V+ +  +P D    AS S D TV++W L  G    + TL
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           +GHE  V+ + +   G    +  G+DD  +++WD +    ++TLE  
Sbjct: 325 KGHEGPVSSLSFSPDGSL-LVSGGSDDGTIRLWDLRTGKPLKTLEGH 370

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.2 bits (235), Expect = 1e-22
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 10/210 (4%)

Query: 24  HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83
             +   +LA L +  V + +     +       +  + +  F P    +++GS D  + +
Sbjct: 36  SESGILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKL 91

Query: 84  FNYNTLER-FHSFE-AHSDYVRCVAV-HPTQPFLLT--SSDDMLIKLWNWEKAWACQQVF 138
           ++ +  E+   S E  H   V  +A+  P    +L   SS D  +KLW+        +  
Sbjct: 92  WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151

Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD 198
           EGH+  V  +  +P      + +SLD T+K+W L +  P  TL GH   V+ + +   G 
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211

Query: 199 KPYLISGADDRLVKIWDYQNKTCVQTLESG 228
              + SG+ D  +++WD      +++  SG
Sbjct: 212 L-LIASGSSDGTIRLWDLSTGKLLRSTLSG 240

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.4 bits (233), Expect = 2e-22
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN-VKSFE-VCDLPVRAAKF 65
              L    D +      P    +L+   +G + +W+ +  +  +KS E + D  V     
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 66  -VPRKNWIVT--GSDDMQVCVFNYNTL-ERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-D 120
             P  N I+    S D  V +++ +T  +   + E HS+ V  +A  P    L + S  D
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP-NF 179
             IKLW+            GHT  V  +  +P      AS S D T+++W L +      
Sbjct: 178 GTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236

Query: 180 TLEGHEKG-VNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLES 227
           TL GH    V+        D   L SG+ D  +++WD ++  + ++TL  
Sbjct: 237 TLSGHSDSVVSSFSP----DGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.8 bits (216), Expect = 4e-20
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
             L   +D V      P    ++AS   +G + +W+  T + ++S          + F P
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251

Query: 68  RKNWIVTGSDDMQVCVFNYNTL-ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
             + + +GS D  + +++  +      +   HS  V  VA  P    L + S D  ++LW
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 127 N-WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
           +            +GH   V  +  +P  +   +  S D T+++W L +  P  TLEGH 
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH- 370

Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
             V  V +    D   + SG+ D  V++WD    + ++ L+ 
Sbjct: 371 SNVLSVSF--SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.8 bits (216), Expect = 4e-20
 Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 9/207 (4%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQN-VKSFEVCDLPVRAAKFVPRKNWIVTGSDD 78
                P    + +   +G + +W+  ++ + +++       V +  F P    + +GS D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 79  MQVCVFNYNTLERFH--SFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQ 135
             V +++  T +     + + H   V  ++  P    L++  SDD  I+LW+       +
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG---K 362

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
            +     H  +  V    D    +S S D TV++W L + S    L+GH   V  +D+  
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCV 222
            G    L SG+ D  +++WD +     
Sbjct: 423 DGK--SLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 27/120 (22%), Positives = 53/120 (44%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
              LT  +  V      P    +L+S  +G + +W+  T + + +    +  V +  F P
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
               + +GS+D  + V++  T E   +   H++ V  +A  P    L + S D  I++W+
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
              L      V      P    +++    +G + +W+  T + +K+ E     V +  F 
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-GHSNVLSVSFS 379

Query: 67  PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
           P    + +GS D  V +++ +T     + + H+  V  +   P    L + S D  I+LW
Sbjct: 380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Query: 127 NWEK 130
           + + 
Sbjct: 440 DLKT 443

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
            + + H+  V  VA  P    L + SDD  +++W+
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 88  TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
           + E   + + H+  V  VA  P   +L + SDD  IKLW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
               +  +GHT  V  +  +P D N  AS S D TV+VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
               +  +GHT  V  +  +P D    AS S D T+K+W
Sbjct: 2   GELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 9e-06
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
               TL+GH   V  V +    D   L SG+DD  V++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP--DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
           S     TL+GH   V  V +    D  YL SG+DD  +K+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 19/95 (20%)

Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS--------ASPNFTLEGHEKGVN 189
            +GHT  ++ +  NP  +   AS S D T++VW++            P   L+GH+K ++
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 190 CVD-----YYHGGDKPYLISGADDRLVKIWDYQNK 219
            +D     YY       + S   D  V IWD +N+
Sbjct: 130 IIDWNPMNYY------IMCSSGFDSFVNIWDIENE 158

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 145 VMQIVINPKDNNTFASASLDRTVKVW-------QLGSASPNFTLEGHEKGVNCVDYYHGG 197
           ++ +  NP D     +AS D T+  W           + P   L+GH K V  V  +H  
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS-FHPS 136

Query: 198 DKPYLISGADDRLVKIWDYQNKTCVQTLES 227
               L S   D +V +WD +    V+ ++ 
Sbjct: 137 AMNVLASAGADMVVNVWDVERGKAVEVIKC 166

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 112 PF----LLTSSDDMLIKLWNWEKAWACQQV------FEGHTHYVMQIVINPKDNNTFASA 161
           PF    L T+S+D  I  W   +    Q +       +GHT  V  +  +P   N  ASA
Sbjct: 85  PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144

Query: 162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221
             D  V VW +        ++ H   +  +++   G    L + + D+ + I D ++ T 
Sbjct: 145 GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS--LLCTTSKDKKLNIIDPRDGTI 202

Query: 222 VQTLES 227
           V ++E+
Sbjct: 203 VSSVEA 208

Length = 493

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 29/170 (17%)

Query: 78  DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV 137
           D  +               AH  ++  ++ +  +  LL S+DD+ I LWN E       +
Sbjct: 156 DEIIAAK-----PCRVYANAHPYHINSISFNSDKETLL-SADDLRINLWNLEIIDGSFNI 209

Query: 138 FEGHTHYVMQI--VIN-----PKDNNTFASASLDRTVKVWQLGSAS----PNFTLEGHEK 186
            +   H + ++  VI      P+  N F  +S    +K+  L  ++         E    
Sbjct: 210 VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTID 269

Query: 187 GVNCVDYYHG----------GDKPYLISGADDRLVKIWDYQN-KTCVQTL 225
           GV+ VD++             D    I   D   VKIWD    K  ++T+
Sbjct: 270 GVD-VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI 318

Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG0276|consensus	794		100.0
KOG0272|consensus	459		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0263|consensus	707		100.0
KOG0286|consensus	343		100.0
KOG0279|consensus	315		100.0
KOG0279|consensus	315		100.0
KOG0271|consensus	480		100.0
KOG0295|consensus	406		100.0
KOG0645|consensus	312		100.0
KOG0266|consensus	456		100.0
KOG0266|consensus	456		100.0
KOG0286|consensus	343		100.0
KOG0263|consensus	707		100.0
KOG0315|consensus	311		100.0
KOG0284|consensus	464		100.0
KOG0273|consensus	524		100.0
KOG0295|consensus	406		100.0
KOG0285|consensus	460		100.0
KOG0292|consensus	1202		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0291|consensus	893		100.0
KOG0292|consensus	1202		100.0
KOG0281|consensus	499		100.0
KOG0316|consensus	307		100.0
KOG0276|consensus	794		100.0
KOG0296|consensus	399		100.0
KOG0265|consensus	338		100.0
KOG0282|consensus	503		100.0
KOG0284|consensus	464		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0277|consensus	311		100.0
KOG0319|consensus	775		100.0
KOG0282|consensus	503		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0645|consensus	312		100.0
KOG0285|consensus	460		100.0
KOG0281|consensus	499		100.0
KOG0315|consensus	311		100.0
KOG0319|consensus	775		100.0
KOG0293|consensus	519		100.0
KOG0277|consensus	311		100.0
KOG0275|consensus	508		100.0
KOG0274|consensus	537		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291|consensus	893		99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0294|consensus	362		99.98
KOG0273|consensus	524		99.98
KOG0313|consensus	423		99.97
KOG0310|consensus	487		99.97
KOG0265|consensus	338		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0264|consensus	422		99.97
KOG0274|consensus	537		99.97
KOG0296|consensus	399		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1446|consensus	311		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0640|consensus	430		99.97
KOG0643|consensus	327		99.97
KOG0318|consensus	603		99.97
KOG0318|consensus	603		99.97
KOG0313|consensus	423		99.96
KOG0283|consensus	712		99.96
KOG0310|consensus	487		99.96
KOG0283|consensus	712		99.96
KOG0264|consensus	422		99.96
KOG0300|consensus	481		99.96
KOG0643|consensus	327		99.96
KOG0289|consensus	506		99.96
KOG0640|consensus	430		99.96
KOG0306|consensus	888		99.96
KOG0299|consensus	479		99.96
KOG0299|consensus	479		99.96
KOG0308|consensus	735		99.96
KOG0306|consensus	888		99.96
KOG0267|consensus	825		99.96
KOG0646|consensus	476		99.95
KOG0305|consensus	484		99.95
KOG0305|consensus	484		99.95
KOG0269|consensus	839		99.95
KOG0268|consensus	433		99.95
KOG0973|consensus	942		99.95
KOG0300|consensus	481		99.95
KOG0278|consensus	334		99.95
KOG0289|consensus	506		99.95
KOG0772|consensus	641		99.95
KOG0275|consensus	508		99.95
KOG0647|consensus	347		99.95
KOG0278|consensus	334		99.95
KOG0308|consensus	735		99.94
KOG1407|consensus	313		99.94
KOG0288|consensus	459		99.94
KOG0267|consensus	825		99.94
KOG0302|consensus	440		99.94
KOG0269|consensus	839		99.94
KOG0316|consensus	307		99.94
KOG0641|consensus	350		99.94
KOG0301|consensus	745		99.94
KOG0973|consensus	942		99.94
KOG1332|consensus	299		99.93
KOG1332|consensus	299		99.93
KOG0301|consensus	745		99.93
KOG4283|consensus	397		99.93
KOG0772|consensus	641		99.93
KOG0270|consensus	463		99.93
KOG1407|consensus	313		99.93
KOG0293|consensus	519		99.93
KOG0270|consensus	463		99.93
KOG1036|consensus	323		99.92
KOG1446|consensus	311		99.92
KOG0288|consensus	459		99.92
KOG0642|consensus	577		99.92
KOG0647|consensus	347		99.92
KOG4328|consensus	498		99.91
KOG2445|consensus	361		99.91
KOG1007|consensus	370		99.91
KOG0302|consensus	440		99.91
KOG4378|consensus	673		99.91
KOG0307|consensus	1049		99.9
KOG2096|consensus	420		99.9
KOG1274|consensus	933		99.9
KOG1408|consensus	1080		99.9
KOG2919|consensus	406		99.9
KOG0639|consensus	705		99.89
KOG1063|consensus	764		99.89
KOG0641|consensus	350		99.89
KOG1273|consensus	405		99.89
KOG0307|consensus	1049		99.89
KOG4283|consensus	397		99.89
KOG1408|consensus	1080		99.89
KOG1036|consensus	323		99.88
KOG0321|consensus	720		99.88
KOG0294|consensus	362		99.88
KOG2048|consensus	691		99.88
KOG0646|consensus	476		99.87
KOG0303|consensus	472		99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG2048|consensus	691		99.87
KOG0650|consensus	733		99.87
KOG0290|consensus	364		99.86
KOG0639|consensus	705		99.86
KOG2106|consensus	626		99.86
KOG1310|consensus	758		99.86
KOG2106|consensus	626		99.86
KOG1007|consensus	370		99.85
KOG0322|consensus	323		99.85
KOG1034|consensus	385		99.85
KOG4328|consensus	498		99.85
KOG1539|consensus	910		99.85
KOG1188|consensus	376		99.85
KOG1034|consensus	385		99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG0649|consensus	325		99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG0268|consensus	433		99.83
KOG4378|consensus	673		99.83
KOG0321|consensus	720		99.83
KOG1539|consensus	910		99.82
KOG1063|consensus	764		99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG2055|consensus	514		99.82
KOG0644|consensus	1113		99.82
KOG1273|consensus	405		99.82
KOG2919|consensus	406		99.82
KOG2096|consensus	420		99.82
KOG1274|consensus	933		99.81
KOG0303|consensus	472		99.8
KOG4227|consensus	609		99.8
KOG1587|consensus	555		99.79
KOG0649|consensus	325		99.79
KOG1188|consensus	376		99.78
KOG2055|consensus	514		99.77
KOG1445|consensus	1012		99.77
KOG0650|consensus	733		99.77
KOG1538|consensus	1081		99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1009|consensus	434		99.76
KOG1517|consensus	1387		99.75
KOG1009|consensus	434		99.75
KOG0771|consensus	398		99.74
KOG1240|consensus	1431		99.73
KOG2445|consensus	361		99.73
KOG1523|consensus	361		99.72
KOG0290|consensus	364		99.72
KOG0322|consensus	323		99.72
KOG1524|consensus	737		99.71
KOG2394|consensus	636		99.7
KOG1445|consensus	1012		99.7
KOG1272|consensus	545		99.7
KOG1334|consensus	559		99.69
KOG1310|consensus	758		99.67
KOG0642|consensus	577		99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
KOG2394|consensus	636		99.65
KOG1587|consensus	555		99.65
KOG2110|consensus	391		99.64
KOG0974|consensus	967		99.64
KOG2110|consensus	391		99.63
KOG1523|consensus	361		99.62
KOG1064|consensus	2439		99.62
PRK11028	330	6-phosphogluconolactonase; Provisional	99.62
KOG3881|consensus	412		99.61
KOG1524|consensus	737		99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.59
KOG1517|consensus	1387		99.58
KOG0771|consensus	398		99.58
KOG2321|consensus	703		99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
KOG3881|consensus	412		99.57
KOG1409|consensus	404		99.57
KOG1963|consensus	792		99.57
KOG1963|consensus	792		99.56
KOG1409|consensus	404		99.56
PRK04922	433	tolB translocation protein TolB; Provisional	99.56
KOG4227|consensus	609		99.56
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG2321|consensus	703		99.53
PRK01742	429	tolB translocation protein TolB; Provisional	99.51
KOG0644|consensus	1113		99.5
KOG2111|consensus	346		99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
KOG4547|consensus	541		99.48
KOG2139|consensus	445		99.46
KOG1354|consensus	433		99.46
KOG1272|consensus	545		99.46
KOG0974|consensus	967		99.45
KOG0280|consensus	339		99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
KOG1538|consensus	1081		99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.45
KOG0280|consensus	339		99.44
KOG2139|consensus	445		99.44
KOG3914|consensus	390		99.42
KOG2111|consensus	346		99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.38
KOG1240|consensus	1431		99.36
KOG4714|consensus	319		99.36
PRK02889	427	tolB translocation protein TolB; Provisional	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.32
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.31
KOG3914|consensus	390		99.3
PRK04922	433	tolB translocation protein TolB; Provisional	99.3
KOG4497|consensus	447		99.29
KOG2695|consensus	425		99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.28
KOG1334|consensus	559		99.27
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
KOG4547|consensus	541		99.2
KOG0309|consensus	1081		99.2
KOG0309|consensus	1081		99.2
KOG1064|consensus	2439		99.17
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG4532|consensus	344		99.1
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.07
KOG2695|consensus	425		99.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
KOG4190|consensus	1034		99.03
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
PRK00178	430	tolB translocation protein TolB; Provisional	99.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.01
KOG4497|consensus	447		98.99
KOG4190|consensus	1034		98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.99
KOG1354|consensus	433		98.99
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.94
KOG1912|consensus	1062		98.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
KOG4714|consensus	319		98.91
KOG1832|consensus	1516		98.86
PRK04792	448	tolB translocation protein TolB; Provisional	98.86
KOG0882|consensus	558		98.84
PRK04043	419	tolB translocation protein TolB; Provisional	98.83
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.82
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.82
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.81
KOG2315|consensus	566		98.79
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.78
KOG2315|consensus	566		98.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
KOG2066|consensus	846		98.72
KOG4532|consensus	344		98.72
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.71
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.71
KOG1275|consensus	1118		98.69
KOG2114|consensus	933		98.65
KOG1912|consensus	1062		98.65
KOG1008|consensus	783		98.64
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.61
COG4946	668	Uncharacterized protein related to the periplasmic	98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.57
KOG1920|consensus	1265		98.57
COG4946	668	Uncharacterized protein related to the periplasmic	98.56
KOG1645|consensus	463		98.54
KOG3621|consensus	726		98.53
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.5
KOG2041|consensus	1189		98.47
KOG1008|consensus	783		98.47
KOG2114|consensus	933		98.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.42
KOG0882|consensus	558		98.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.38
KOG2041|consensus	1189		98.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.33
KOG1832|consensus	1516		98.32
PRK04043	419	tolB translocation protein TolB; Provisional	98.32
KOG1275|consensus	1118		98.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.28
KOG2066|consensus	846		98.28
KOG1645|consensus	463		98.25
KOG4640|consensus	665		98.23
KOG3617|consensus	1416		98.21
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.2
KOG2444|consensus	238		98.15
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.1
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.1
KOG4640|consensus	665		98.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.05
KOG3617|consensus	1416		98.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.99
KOG2314|consensus	698		97.93
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.87
PRK02888	635	nitrous-oxide reductase; Validated	97.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.86
KOG2314|consensus	698		97.82
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.76
KOG1920|consensus	1265		97.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.71
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.69
KOG4649|consensus	354		97.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.63
KOG2444|consensus	238		97.59
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.55
PRK02888	635	nitrous-oxide reductase; Validated	97.54
KOG3621|consensus	726		97.48
KOG2395|consensus	644		97.43
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.43
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.41
PHA02713	557	hypothetical protein; Provisional	97.31
PRK13616	591	lipoprotein LpqB; Provisional	97.31
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.27
KOG2079|consensus	1206		97.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.2
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.2
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.18
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.18
KOG4649|consensus	354		97.1
COG3391	381	Uncharacterized conserved protein [Function unknow	97.09
KOG2395|consensus	644		97.08
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.07
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.05
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.03
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.03
KOG2079|consensus	1206		96.96
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.8
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.75
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.69
COG3391	381	Uncharacterized conserved protein [Function unknow	96.66
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.56
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.51
PHA02713	557	hypothetical protein; Provisional	96.47
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.39
PHA03098	534	kelch-like protein; Provisional	96.29
KOG1916|consensus	1283		96.24
KOG4441|consensus	571		96.18
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.1
PRK13684	334	Ycf48-like protein; Provisional	95.9
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.83
KOG4441|consensus	571		95.76
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.75
KOG4499|consensus	310		95.75
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.7
PRK13616	591	lipoprotein LpqB; Provisional	95.68
KOG4499|consensus	310		95.6
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.5
KOG1897|consensus	1096		95.42
PHA02790	480	Kelch-like protein; Provisional	95.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.3
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.11
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.01
KOG2377|consensus	657		95.0
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.81
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.69
KOG1900|consensus	1311		94.24
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.09
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.01
KOG2377|consensus	657		93.91
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.79
COG5167	776	VID27 Protein involved in vacuole import and degra	93.75
KOG1983|consensus	993		93.74
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.64
PRK10115	686	protease 2; Provisional	93.58
KOG3630|consensus	1405		93.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.22
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.15
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.1
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.08
KOG4460|consensus	741		93.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.84
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.66
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.5
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.07
PHA03098	534	kelch-like protein; Provisional	91.99
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.96
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.89
COG5167	776	VID27 Protein involved in vacuole import and degra	91.79
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.62
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.58
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.21
PHA02790	480	Kelch-like protein; Provisional	90.32
KOG3630|consensus	1405		90.2
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	89.56
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.44
KOG1900|consensus	1311		88.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.37
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.87
KOG2247|consensus	615		86.64
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.43
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	86.02
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.76
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.51
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	85.5
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.48
COG4590	733	ABC-type uncharacterized transport system, permeas	84.39
KOG1896|consensus	1366		84.33
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.26
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.03
KOG1916|consensus	1283		83.73
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.72
KOG3616|consensus	1636		83.34
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	81.14
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	80.17
PRK13684	334	Ycf48-like protein; Provisional	80.06

>KOG0276|consensus

Probab=100.00  E-value=1.6e-50  Score=326.58  Aligned_cols=225  Identities=74%  Similarity=1.287  Sum_probs=220.8

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      |+++++++..|+++|.+++|||..|+++++-..|.|.|||.++...++.+...+.||++..|.+..+++++|++|+.|++
T Consensus         2 ~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    2 KLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRV   81 (794)
T ss_pred             cchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEE
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      |+.++++.++.|.+|.+.|+|++.||+.++++|+|.|-+|++||++..+.+.++|+||.++|++++|+|.|.+.|+|++.
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |++|++|.+.+..+.+++++|..+|+|++|++.+++++|+||++|.+|+|||+++..|++|+++|
T Consensus       162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH  226 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH  226 (794)
T ss_pred             cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999987

>KOG0272|consensus

Probab=100.00  E-value=6e-44  Score=276.82  Aligned_cols=222  Identities=23%  Similarity=0.387  Sum_probs=207.7

Q ss_pred             chhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      ....++|.||+.+|.++.|||.  +..+++++.||+|++|++.+..++..+.+|...|..+.|+|+|++|+|++-|.+-+
T Consensus       207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR  286 (459)
T ss_pred             cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence            4667789999999999999998  56899999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      +||+++...+....+|...|.+++|+|+|.+++||+-|..-+|||++++. +.-.+.+|..+|..+.|+| +|..+||||
T Consensus       287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsP-NGy~lATgs  364 (459)
T KOG0272|consen  287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSP-NGYHLATGS  364 (459)
T ss_pred             hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EEEEecccccceeeEeECC-CceEEeecC
Confidence            99999999988889999999999999999999999999999999999884 4556789999999999999 789999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      .|+++++||++..+++..+.+|..-|..+.|.+ ..+.+|+|+|.|++++||..++..+++++.+|+
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p-~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe  430 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP-QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE  430 (459)
T ss_pred             CCCcEEEeeecccccceecccccchhhheEecc-cCCeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence            999999999999999999999999999999976 456699999999999999999999999999885

>KOG0272|consensus

Probab=100.00  E-value=1.1e-41  Score=264.27  Aligned_cols=214  Identities=25%  Similarity=0.385  Sum_probs=199.5

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCc
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .|-+.||..+.|++++..+++|+++|.+++|+..++..+.+|.+|...+.++.|+|.  +..+|+++.||.+++|++++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            456789999999999999999999999999999999999999999999999999997  568999999999999999998


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      .++..+.+|..+|..++|||+|++|+|++.|.+-++||++.... ....+||...|..++|+| +|.+++||+.|..-|+
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRV  329 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecC-CCceeeccCccchhhe
Confidence            89999999999999999999999999999999999999987633 444689999999999998 7999999999999999


Q ss_pred             EeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      ||++++.++..+.+|...|..++|++  ++..|||||.|++++|||++..+++-++.+|.
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsP--NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~  387 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSP--NGYHLATGSSDNTCKVWDLRMRSELYTIPAHS  387 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECC--CceEEeecCCCCcEEEeeecccccceeccccc
Confidence            99999999999999999999999955  56689999999999999999999999998873

>KOG0271|consensus

Probab=100.00  E-value=4.2e-41  Score=258.59  Aligned_cols=214  Identities=22%  Similarity=0.384  Sum_probs=181.9

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .+.||..+|.|++|+|++..|++|+.|.++++||+.+..+..+.+.|..-|.|++|+|+|+.||+|+.||+|++||..++
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceE-EEeccCCCceeEEEEcC-----CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          90 ERF-HSFEAHSDYVRCVAVHP-----TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        90 ~~~-~~~~~h~~~i~~v~~~~-----~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      +.+ +.+.+|...|++++|.|     ...++++++.||.|+|||+..+ .+...+.+|+.+|+++.|-  ...++.||+.
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwG--G~gliySgS~  266 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWG--GEGLIYSGSQ  266 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEc--CCceEEecCC
Confidence            765 67899999999999987     4568999999999999999755 6677889999999999995  3569999999


Q ss_pred             CCcEEEEeCCCCCceEEEe-------------------------------------------------------------
Q psy4653         164 DRTVKVWQLGSASPNFTLE-------------------------------------------------------------  182 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~-------------------------------------------------------------  182 (229)
                      |++|++|+...+....+++                                                             
T Consensus       267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~  346 (480)
T KOG0271|consen  267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF  346 (480)
T ss_pred             CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence            9999999876543333333                                                             


Q ss_pred             ------------------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         183 ------------------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       183 ------------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                                        +|..-|+.+.|  ++++.++++||-|+.|++||.++|+-+.++-+|
T Consensus       347 tlflW~p~~~kkpi~rmtgHq~lVn~V~f--SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH  408 (480)
T KOG0271|consen  347 TLFLWNPFKSKKPITRMTGHQALVNHVSF--SPDGRYIASASFDKSVKLWDGRTGKFLASFRGH  408 (480)
T ss_pred             eEEEecccccccchhhhhchhhheeeEEE--CCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence                              45555565555  346667888888888888888888776666543

>KOG0263|consensus

Probab=100.00  E-value=4.3e-41  Score=277.94  Aligned_cols=209  Identities=25%  Similarity=0.484  Sum_probs=198.0

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+.+.||+.+|..+.|+|+.++|++++.|++|++|.+.+...+-.|++|..||..+.|+|-|-++||++.|++.++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ...++++.+.+|.+.|.|+.|||+..|+++||.|.+||+||+..+ ...++|.||.++|.+++++| +|.+|+||+.|+.
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGL  600 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcC-CCceEeecccCCc
Confidence            999999999999999999999999999999999999999999877 55888999999999999999 7999999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      |.+||+.+++++..+.+|.+.+.++.|+.  ++.+|++|+.|++|++||+.+.
T Consensus       601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~--dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  601 IKIWDLANGSLVKQLKGHTGTIYSLSFSR--DGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEEEcCCCcchhhhhcccCceeEEEEec--CCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999999999999965  5669999999999999998754

>KOG0286|consensus

Probab=100.00  E-value=1.6e-39  Score=242.15  Aligned_cols=219  Identities=26%  Similarity=0.498  Sum_probs=200.3

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      |+.++.|+||..+|.++.|++|.+.+++++.||.+.|||..|...+..++....-|...+|+|+++++|+|+-|+...||
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            67778999999999999999999999999999999999999988878887777789999999999999999999999999


Q ss_pred             ECCCc------ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          85 NYNTL------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        85 d~~~~------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      ++.+.      ...+.+.+|++++.|..|-+ +..++|++.|.+..+||++++ +....|.+|.+.|..+.+.|.+++.|
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCeE
Confidence            98754      23467899999999999988 567889999999999999987 55777899999999999999889999


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +||+.|+..++||++.+...+++.+|+..|+++.|+|++.  -++|||+|+++|+||+|....+..++.
T Consensus       203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             EecccccceeeeeccCcceeEeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCcEEeeecc
Confidence            9999999999999999999999999999999999988665  599999999999999999888877764

>KOG0279|consensus

Probab=100.00  E-value=4.7e-39  Score=238.19  Aligned_cols=226  Identities=24%  Similarity=0.320  Sum_probs=202.0

Q ss_pred             CCccchhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCC-----CCeEEEEEecCcCeEEEEEcCCCCEEEE
Q psy4653           1 MPLRLDIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHET-----NQNVKSFEVCDLPVRAAKFVPRKNWIVT   74 (229)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s   74 (229)
                      |++.+++.-.|.+|++.|..++..+.+ +.+++++.|..+.+|++..     |..++.|.+|+..|..+..++++++.++
T Consensus         1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS   80 (315)
T KOG0279|consen    1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS   80 (315)
T ss_pred             CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence            688899999999999999999999985 4566678999999999864     5678899999999999999999999999


Q ss_pred             EeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653          75 GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        75 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      ++.|+.+++||+.+++..+.|.+|...|.+++|+++..++++|+.|++|++|++...-+....-.++...|.++.|+|..
T Consensus        81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999875533333223347889999999964


Q ss_pred             -CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         155 -NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       155 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                       +.+|+++++|+++++||+++-+....+.+|...++.+.++  +++.++++|+.||.+.+||++.++++.++++.
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS--pDGslcasGgkdg~~~LwdL~~~k~lysl~a~  233 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS--PDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF  233 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC--CCCCEEecCCCCceEEEEEccCCceeEeccCC
Confidence             6799999999999999999998888999999999999994  57779999999999999999999999888764

>KOG0279|consensus

Probab=100.00  E-value=8.6e-39  Score=236.79  Aligned_cols=216  Identities=26%  Similarity=0.475  Sum_probs=190.5

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+++.|.||+..|..+..++++++.+++++|+.+++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|+
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEecc-CCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          86 YNTLERFHSFEA-HSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        86 ~~~~~~~~~~~~-h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      +-....+..... +.+-|+|+.|+|+  .+++++++.|++|++||+++- +....+.+|.++++.+.++| ||.++++|+
T Consensus       134 t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSp-DGslcasGg  211 (315)
T KOG0279|consen  134 TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSP-DGSLCASGG  211 (315)
T ss_pred             ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECC-CCCEEecCC
Confidence            876554443333 2678999999998  679999999999999999765 66788899999999999999 799999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .||.+.+||++.++.+..+. |...|++++|.|  + .+.+++..+-.|+|||..++.++.++..
T Consensus       212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp--n-rywL~~at~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP--N-RYWLCAATATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             CCceEEEEEccCCceeEecc-CCCeEeeEEecC--C-ceeEeeccCCceEEEeccchhhhhhccc
Confidence            99999999999999876664 567899999953  4 3666667777799999999998877653

>KOG0271|consensus

Probab=100.00  E-value=1.5e-37  Score=239.07  Aligned_cols=219  Identities=25%  Similarity=0.390  Sum_probs=199.9

Q ss_pred             hhhhhcccCCCceEEEEEcc-----CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe
Q psy4653           6 DIKRKLTARSDRVKCCDLHP-----TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ   80 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p-----~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~   80 (229)
                      ++-+.|.||+..|++++|+|     .++.|++++.||.|+|||+..++++..+.+|..+|+|++|-.+| +|.+|+.|++
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~Drt  269 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRT  269 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCce
Confidence            56678999999999999975     56789999999999999999999999999999999999998655 9999999999


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEc-----------CCCC-------------------------EEEEEeCCCcEE
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVH-----------PTQP-------------------------FLLTSSDDMLIK  124 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~-----------~~~~-------------------------~~~s~~~d~~v~  124 (229)
                      |++|+...++.++.+++|...|+.++++           |.+.                         .+++|+.|+++.
T Consensus       270 Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlf  349 (480)
T KOG0271|consen  270 IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLF  349 (480)
T ss_pred             EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEE
Confidence            9999999999999999999999988887           2233                         499999999999


Q ss_pred             EEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE
Q psy4653         125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS  204 (229)
Q Consensus       125 lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  204 (229)
                      +|+-....++...+.+|..-|..+.|+| |+.++||++.|+.|++||.++++.+.++++|-+.|+.++|+  .+.++|++
T Consensus       350 lW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws--aDsRLlVS  426 (480)
T KOG0271|consen  350 LWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS--ADSRLLVS  426 (480)
T ss_pred             EecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec--cCccEEEE
Confidence            9998777677778899999999999999 78999999999999999999999999999999999999995  46779999


Q ss_pred             eeCCCeEEEEECCCCeEEEeeccC
Q psy4653         205 GADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       205 ~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ||.|.++++|++++.+....|.+|
T Consensus       427 ~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  427 GSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             cCCCceEEEEEeeeeeecccCCCC
Confidence            999999999999999998888866

>KOG0295|consensus

Probab=100.00  E-value=7.9e-37  Score=233.53  Aligned_cols=221  Identities=25%  Similarity=0.469  Sum_probs=202.8

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-CCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ++.+.++||++.|..++|+..|..+++++.|=++++||..+ .++++...+|+..|.++.|.|.|+++++++.|.+|+.|
T Consensus       141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~W  220 (406)
T KOG0295|consen  141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAW  220 (406)
T ss_pred             hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEE
Confidence            45678999999999999999999999999999999999987 56677777888899999999999999999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-----------
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----------  153 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----------  153 (229)
                      ++.++-++..+.+|.+-|..+..+.||.++++++.|.+|++|-+... .+...+..|..+|.+++|-|.           
T Consensus       221 e~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  221 ECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             ecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccC
Confidence            99999999999999999999999999999999999999999998765 567778889999999998652           


Q ss_pred             ---CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         154 ---DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       154 ---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                         .+.++.+++.|++|++||+.++.+++++.+|...|..++|.+  .++||+++.+|+++++||++++.|.+++++|+
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p--~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~  376 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP--GGKYILSCADDKTLRVWDLKNLQCMKTLEAHE  376 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC--CCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence               124899999999999999999999999999999999999954  56799999999999999999999999999874

>KOG0645|consensus

Probab=100.00  E-value=2.1e-35  Score=218.11  Aligned_cols=210  Identities=25%  Similarity=0.434  Sum_probs=182.3

Q ss_pred             chhhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEE---EE-EecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVK---SF-EVCDLPVRAAKFVPRKNWIVTGSDDM   79 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~l~sg~~d~   79 (229)
                      +.+-+++.+|+++|..++|||- |..|++++.|+.|++|+...++...   .+ ..|+..|++++|+|.|++|++||-|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4455678999999999999998 8889999999999999999644322   22 24678899999999999999999999


Q ss_pred             eEEEEECCC--cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC--CceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          80 QVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        80 ~i~iwd~~~--~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      ++.||.-..  .+++..+++|...|.|++|+++|.+|++++.|++|.+|.+.  +...+..++.+|..-|..+.|+| +.
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TE  162 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-Cc
Confidence            999997543  46788999999999999999999999999999999999987  44457788999999999999999 57


Q ss_pred             CEEEEEECCCcEEEEeCC---CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         156 NTFASASLDRTVKVWQLG---SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      .+|+|++.|.+|++|...   .-.+..++.+|...|-+++|.+.  +..|++++.|++|+||-..
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~--G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI--GSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC--CceEEEecCCcceEeeeec
Confidence            899999999999999865   23578899999999999999654  4579999999999999854

>KOG0266|consensus

Probab=100.00  E-value=2.7e-35  Score=245.44  Aligned_cols=221  Identities=27%  Similarity=0.477  Sum_probs=196.6

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEc-CCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNH-ETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +.+.+.+|...|.+++|+|++.++++++.|+++++||+ ..+..++++..|...|.+++|+|+++++++|+.|+.|+|||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            56667899999999999999999999999999999999 55588999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeeeeeccee--eEEEEEEcCCCCCEEEEEE
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTH--YVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~  162 (229)
                      +++++++..+++|.+.|++++|++++.++++++.|+.|++||+..... +...+.++..  ++..+.|+| ++.++++++
T Consensus       275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~  353 (456)
T KOG0266|consen  275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSAS  353 (456)
T ss_pred             ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEec
Confidence            999999999999999999999999999999999999999999987753 3445555544  589999998 789999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEE-EEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCV-DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .|+.+++||++.+.......+|...+.|+ .+.....+.++.+|+.|+.|++||..++..+++++.|
T Consensus       354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            99999999999999999999998765443 2223456679999999999999999999998888876

>KOG0266|consensus

Probab=100.00  E-value=1e-34  Score=241.98  Aligned_cols=216  Identities=27%  Similarity=0.530  Sum_probs=193.5

Q ss_pred             hhcccC-CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           9 RKLTAR-SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         9 ~~~~~~-~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ..+.+| ...|.++.|+|+|..+++++.|+.+++|+..+.+  .+..+..|...|..++|+|+++++++|+.|++|+|||
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd  231 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD  231 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence            334444 7899999999999999999999999999998877  6677778888999999999999999999999999999


Q ss_pred             C-CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          86 Y-NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        86 ~-~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      + ..+..++.+++|...|++++|+|+++++++|+.|++|++||++.+ .+...+.+|...|..+++++ ++.+|++++.|
T Consensus       232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d  309 (456)
T KOG0266|consen  232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP-DGNLLVSASYD  309 (456)
T ss_pred             ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence            9 556788999999999999999999999999999999999999874 67888899999999999998 78999999999


Q ss_pred             CcEEEEeCCCCC--ceEEEecCCCc--eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         165 RTVKVWQLGSAS--PNFTLEGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       165 ~~i~~wd~~~~~--~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +.|++||+.++.  +...+.++...  +.++.|+  +++.+|++++.|+.+++||++.+.+++.+..+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs--p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~  375 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS--PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH  375 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEEC--CCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence            999999999988  56777777655  7888885  46679999999999999999999999888765

>KOG0286|consensus

Probab=100.00  E-value=2.3e-34  Score=214.66  Aligned_cols=214  Identities=21%  Similarity=0.362  Sum_probs=190.7

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC------CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN------QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      +.--+.=|+.++|+|.+++++.|+-|+...||++.+.      +..+.+..|...+.|+.|.+ ++.|+||+.|.+.-+|
T Consensus        93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalW  171 (343)
T KOG0286|consen   93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALW  171 (343)
T ss_pred             EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEE
Confidence            3334456899999999999999999999999999865      33456778888999999997 6688899999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      |+++++.+..|.+|.+-|.+++++| +++.|++|+.|++.+|||++.+ .+.+.|.+|...|..+.|.| ++.-|++|+.
T Consensus       172 Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP-~G~afatGSD  249 (343)
T KOG0286|consen  172 DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFP-SGDAFATGSD  249 (343)
T ss_pred             EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEcc-CCCeeeecCC
Confidence            9999999999999999999999999 8899999999999999999887 78899999999999999999 7899999999


Q ss_pred             CCcEEEEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         164 DRTVKVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      |+++|+||++....+..+..  ...++++++|+.+  +++|++|..|..+.+||.-+++.+..|.+|+
T Consensus       250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S--GRlLfagy~d~~c~vWDtlk~e~vg~L~GHe  315 (343)
T KOG0286|consen  250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKS--GRLLFAGYDDFTCNVWDTLKGERVGVLAGHE  315 (343)
T ss_pred             CceeEEEeecCCcEEeeeccCcccCCceeEEEccc--ccEEEeeecCCceeEeeccccceEEEeeccC
Confidence            99999999999877666643  3457999999654  5689999999999999999999999998875

>KOG0263|consensus

Probab=100.00  E-value=3.2e-35  Score=243.27  Aligned_cols=213  Identities=24%  Similarity=0.457  Sum_probs=192.7

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-------------------------------eEEEEEecCcCe
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-------------------------------NVKSFEVCDLPV   60 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-------------------------------~~~~~~~~~~~v   60 (229)
                      ......|.|+.|++++..+|.|-.|..|++|.+...+                               ..+.+.+|..+|
T Consensus       375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            3445679999999999999999999999999987421                               123355788999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec
Q psy4653          61 RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG  140 (229)
Q Consensus        61 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~  140 (229)
                      ....|+|+.++|+++|.|+++++|.+.+...+-.+++|..+|..+.|+|.|-+|+|+|.|++.++|..+.. .+.++|.+
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifag  533 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAG  533 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875 67899999


Q ss_pred             ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       141 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      |-..|.++.|+| +..|+++||.|+++|+||..++..++.+.||..+|.+++|++  ++.+|++|+.||.|+|||+.+++
T Consensus       534 hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp--~Gr~LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  534 HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP--CGRYLASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             cccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC--CCceEeecccCCcEEEEEcCCCc
Confidence            999999999999 689999999999999999999999999999999999999955  77899999999999999999998


Q ss_pred             EEEeeccC
Q psy4653         221 CVQTLESG  228 (229)
Q Consensus       221 ~~~~~~~~  228 (229)
                      .+..+-.|
T Consensus       611 ~v~~l~~H  618 (707)
T KOG0263|consen  611 LVKQLKGH  618 (707)
T ss_pred             chhhhhcc
Confidence            88776544

>KOG0315|consensus

Probab=100.00  E-value=4e-34  Score=209.19  Aligned_cols=218  Identities=17%  Similarity=0.392  Sum_probs=188.7

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ...+|.+|+..|.++.|+.+|+++.+|+.||+++|||++...+.+.|+ +..+|+++..+|+...|++|..+|.|++||+
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            456788999999999999999999999999999999999977767665 4579999999999999999999999999999


Q ss_pred             CCcceEEEe-ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-----eeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          87 NTLERFHSF-EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-----ACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        87 ~~~~~~~~~-~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ....+.+.+ ..-..+|.++.+.|+|.+++.+...|..++|++....     .+...+..|.+.+....++| ++++|++
T Consensus       154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat  232 (311)
T KOG0315|consen  154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLAT  232 (311)
T ss_pred             cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEe
Confidence            876554443 2334689999999999999999999999999985421     23345778999999999999 7899999


Q ss_pred             EECCCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         161 ASLDRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +|.|.++++|+...- +....+++|..-+-..+|  +.++.||+||+.|+.+++||+..++.++.+++|
T Consensus       233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~F--S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAF--SADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             ecCCceEEEEecCCceeeEEEeecCCceEEeeee--ccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            999999999998765 455678899999998888  567889999999999999999999999988876

>KOG0284|consensus

Probab=100.00  E-value=2.6e-36  Score=233.66  Aligned_cols=209  Identities=25%  Similarity=0.417  Sum_probs=184.2

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      ..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+.+|+++.|++++.++++|+.+|.|++|+.+-. .++.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHH
Confidence            357999999999999999999999999998654444445678999999999999999999999999999997643 4455


Q ss_pred             eccCC-CceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653          95 FEAHS-DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus        95 ~~~h~-~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  173 (229)
                      +++|. +.|++++|+|++..|++++.|++|+|||.... +.+.++.||.-.|.++.|+|. -.++++||.|..|++||.+
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCC
Confidence            56665 89999999999999999999999999998765 446667999999999999995 5799999999999999999


Q ss_pred             CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       174 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++.++.++.+|...|..+.|.+  ++++|+|+|.|..++++|+++.+-++++.+|
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~--n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNP--NGNWLLTGSKDQSCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcC--CCCeeEEccCCceEEEEehhHhHHHHHhhcc
Confidence            9999999999999999999954  5579999999999999999988777777665

>KOG0273|consensus

Probab=100.00  E-value=1.1e-33  Score=222.49  Aligned_cols=219  Identities=24%  Similarity=0.380  Sum_probs=196.5

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+..+|..|+.||.++.|+.+|.++++++.||++.+||..++.....|..+..+...+.|-. ...+++.+.|+.|.++.
T Consensus       267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCK  345 (524)
T ss_pred             hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEE
Confidence            34567889999999999999999999999999999999999999999998887767788874 45788999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC--------CCCE
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK--------DNNT  157 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~  157 (229)
                      +....++.++.+|.+.|.++.|.|.+.+|++++.|++++||...+. ....-+.+|...|+.+.|+|.        .+..
T Consensus       346 v~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~  424 (524)
T KOG0273|consen  346 VGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLM  424 (524)
T ss_pred             ecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCce
Confidence            9888899999999999999999999999999999999999998655 345556789989999998773        4568


Q ss_pred             EEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +++++.|+++++||+..+.+++.+..|..+|.+++|++  ++.++|+|+.||.|.||++++++..+.+...
T Consensus       425 l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~--~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  425 LASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP--NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             EEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC--CCcEEEecCCCCeeEeccccchheeEeecCC
Confidence            99999999999999999999999999999999999954  6679999999999999999999999887643

>KOG0295|consensus

Probab=100.00  E-value=8.5e-35  Score=222.44  Aligned_cols=225  Identities=26%  Similarity=0.441  Sum_probs=205.5

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      +|..+...+.||..+|..+-|||.-..+++++.|++|++||..+++....+++|.+.+..+.|...|++|++++.|-.++
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCC-cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          83 VFNYNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        83 iwd~~~-~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      +||.++ .++++.+.+|...|.+++|-|.+.++++++.|.+|+.|++..+ -+..+|.+|...|.-+..+. |+.+++++
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~-DGti~As~  253 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQ-DGTIIASC  253 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecC-CeeEEEec
Confidence            999976 5567778899999999999999999999999999999999887 56788999999999999885 89999999


Q ss_pred             ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCC-------------CcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG-------------DKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +.|.++++|-+.+..+...++.|+.++.|++|.|..             .++++.++|.|++|++||+.++.|+.++-+|
T Consensus       254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh  333 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH  333 (406)
T ss_pred             CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence            999999999999998888899999999999996421             1358999999999999999999999999876


Q ss_pred             C
Q psy4653         229 I  229 (229)
Q Consensus       229 ~  229 (229)
                      .
T Consensus       334 d  334 (406)
T KOG0295|consen  334 D  334 (406)
T ss_pred             c
Confidence            3

>KOG0285|consensus

Probab=100.00  E-value=1.6e-34  Score=220.90  Aligned_cols=216  Identities=22%  Similarity=0.412  Sum_probs=196.4

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ++-+.++||..=|.|+++.|-+.++++|+.|++++|||+.+|++..++.+|-..|..+.+++..-||.+++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            56677999999999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      ++..+.++.+.+|-..|.|++.+|....+++|+.|.++++||++... ...++.||..+|..+.+.|.+ ..++||+.|+
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~  299 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTD-PQVITGSHDS  299 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCC-CceEEecCCc
Confidence            99999999999999999999999999999999999999999998763 356678999999999999854 5889999999


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +|++||++.++...++..|...+.+++..+  ....+++++.| .|+-|++-.+..++.+.
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvral~lhP--~e~~fASas~d-nik~w~~p~g~f~~nls  357 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRALCLHP--KENLFASASPD-NIKQWKLPEGEFLQNLS  357 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeEEecCC--chhhhhccCCc-cceeccCCccchhhccc
Confidence            999999999999999999999999999854  44578888887 49999998776655543

>KOG0292|consensus

Probab=100.00  E-value=3.2e-34  Score=240.06  Aligned_cols=217  Identities=25%  Similarity=0.481  Sum_probs=194.8

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+-.+|.+|..+|..++|||+++++++|+.|-.|++|+..+.+++.++.+|-+.|+.+.|++.--+|+++|+|.+|+||+
T Consensus        42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN  121 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN  121 (1202)
T ss_pred             hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence            44566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce----------------------------eeeee
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW----------------------------ACQQV  137 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~----------------------------~~~~~  137 (229)
                      .++.+++..+.+|...|.|-.|||....++++|-|-+||+||+....                            -+..+
T Consensus       122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence            99999999999999999999999999999999999999999974210                            12345


Q ss_pred             eecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      ++||.-.|.-++|+| +-.+++||+.|+.|++|-+...+  .+-+.++|...|.++-|.+  .+.+++|.|+|++|++||
T Consensus       202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp--~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP--HQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             ecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC--ccceeEecCCCccEEEEe
Confidence            688998999999998 56799999999999999986554  2345689999999999854  556999999999999999


Q ss_pred             CCCCeEEEee
Q psy4653         216 YQNKTCVQTL  225 (229)
Q Consensus       216 ~~~~~~~~~~  225 (229)
                      +.+.++++++
T Consensus       279 m~kRt~v~tf  288 (1202)
T KOG0292|consen  279 MTKRTSVQTF  288 (1202)
T ss_pred             cccccceeee
Confidence            9999999987

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.6e-32  Score=228.94  Aligned_cols=214  Identities=14%  Similarity=0.212  Sum_probs=170.9

Q ss_pred             hcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCC-------eEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCe
Q psy4653          10 KLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQ-------NVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQ   80 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~   80 (229)
                      .+.||+.+|.+++|+| ++..|++|+.|+.|++||+.++.       .+..+..|...|.++.|+|++ ++|++|+.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3779999999999999 78899999999999999997652       456777888899999999985 69999999999


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-EEEEEEcCCCCCEEE
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-VMQIVINPKDNNTFA  159 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~  159 (229)
                      |+|||+++++.+..+.+|.+.|.+++|+|++.++++++.|++|++||++.+.. ...+.+|.+. ...+.|.+. +..++
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~-~~~iv  227 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKR-KDLII  227 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCC-CCeEE
Confidence            99999999998889999999999999999999999999999999999987643 4456677654 345677774 45665


Q ss_pred             EEE----CCCcEEEEeCCCCC-ceEEEecCCCc-eEEEEEEeCCCcCEEEEee-CCCeEEEEECCCCeEEEeecc
Q psy4653         160 SAS----LDRTVKVWQLGSAS-PNFTLEGHEKG-VNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       160 s~~----~d~~i~~wd~~~~~-~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +++    .|+.|++||++... +......+... +....|  ++++++|++|+ .|+.|++||+++++.+..++.
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~--d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF--DEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE--cCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence            543    57999999998654 44434433333 333344  44556777776 599999999999988766543

>KOG0291|consensus

Probab=100.00  E-value=3.1e-33  Score=230.73  Aligned_cols=215  Identities=23%  Similarity=0.388  Sum_probs=188.8

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      -+..||..++.|++++|||+.+++|+.||.|++||..++-+..+|..|...|+.+.|...++.+++.+-||+++.||+..
T Consensus       344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEeccCCC-ceeEEEEcCCCCEEEEEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          89 LERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        89 ~~~~~~~~~h~~-~i~~v~~~~~~~~~~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ....+++..... ...|++..|.|..++.|+.| ..|.+|+++++ +...++.||.+||..+.|+| .+..|+|||+|++
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKT  501 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEcc-ccCeEEeccccce
Confidence            888888876542 46799999999999999888 47999999887 66888999999999999998 6889999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ||+||+-......+--.+...+..++|.|  ++.-|+.+..||.|.+||++.+..+.++++
T Consensus       502 VRiW~if~s~~~vEtl~i~sdvl~vsfrP--dG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETLEIRSDVLAVSFRP--DGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             EEEEEeeccCceeeeEeeccceeEEEEcC--CCCeEEEEEecceEEEEEhhhceeeccccc
Confidence            99999865543333334566788899865  455799999999999999998877766653

>KOG0292|consensus

Probab=100.00  E-value=4.1e-34  Score=239.42  Aligned_cols=206  Identities=39%  Similarity=0.777  Sum_probs=187.3

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      ++..-+.+|..++|||..|+++++-..|.|++||.+=+.++..|..|+.+|+.+.|+|..-++++|++|.+|++|+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            34455789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      +++.++.+|.+.|+.+.||+.-+.++++|.|-+|+||++.++ .+..+..||.++|++..|+| ++++++|+|.|.+||+
T Consensus        84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRV  161 (1202)
T ss_pred             eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCC-ccceEEEecccceEEE
Confidence            999999999999999999999999999999999999999876 67888899999999999999 5789999999999999


Q ss_pred             EeCCCC-----C------------------------ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         170 WQLGSA-----S------------------------PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       170 wd~~~~-----~------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ||+..-     .                        ..+.++||..+|+-++|.+  .-++++||++|+.|++|.++..
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp--TlpliVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC--CcceEEecCCcceeeEEEeccc
Confidence            997431     0                        1146789999999999954  4568999999999999998654

>KOG0281|consensus

Probab=100.00  E-value=2.7e-35  Score=224.61  Aligned_cols=204  Identities=25%  Similarity=0.477  Sum_probs=184.7

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ...+.|+|+.+.  ...+++|..|++|++||.++-.+++.+.+|...|.|+.|..  +.|++|+.|.+|++||.++++++
T Consensus       195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchh
Confidence            356789999986  33489999999999999999999999999999999998874  59999999999999999999999


Q ss_pred             EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                      ..+-.|.+.|..+.|+.  .++++++.|.++.+||+....  .+.+++.||...|..+.|+   .++++|++.|++|++|
T Consensus       271 ~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW  345 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVW  345 (499)
T ss_pred             hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEE
Confidence            99999999999999987  599999999999999997543  3467788999999999884   4699999999999999


Q ss_pred             eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      ++.+.+.+.++.+|..++.|+.|    ++.++++||.|.+|++||+..|+|++.+++|+
T Consensus       346 ~~st~efvRtl~gHkRGIAClQY----r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  346 STSTCEFVRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             eccceeeehhhhcccccceehhc----cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence            99999999999999999999998    45689999999999999999999999999885

>KOG0316|consensus

Probab=100.00  E-value=2.7e-33  Score=203.50  Aligned_cols=222  Identities=18%  Similarity=0.245  Sum_probs=190.3

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +..+.+.++..+|.++.|+-+|++.++++.|.+|++||...+.++++|..|..+|..+..+.+...+++|+.|..+.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeeeeeec------------------------
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQVFEG------------------------  140 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~~~~~~------------------------  140 (229)
                      +++++.++.+.+|.+.|+.+.|+.+...+++|+-|.++++||.+... .+.+++..                        
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtv  167 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTV  167 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcE
Confidence            99999999999999999999999999999999999999999986431 11222111                        


Q ss_pred             --------------ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee
Q psy4653         141 --------------HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       141 --------------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                                    -..+|+++.+++ +++..+.++.|+++++.|..+++.+...++|...-..++++-.....++++||
T Consensus       168 RtydiR~G~l~sDy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS  246 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS  246 (307)
T ss_pred             EEEEeecceeehhhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc
Confidence                          124677888887 56677777888888888888888888889998877766665554456899999


Q ss_pred             CCCeEEEEECCCCeEEEeeccC
Q psy4653         207 DDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       207 ~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +||.|.+||+..++.+..+..+
T Consensus       247 EDG~Vy~wdLvd~~~~sk~~~~  268 (307)
T KOG0316|consen  247 EDGKVYFWDLVDETQISKLSVV  268 (307)
T ss_pred             CCceEEEEEeccceeeeeeccC
Confidence            9999999999999988887765

>KOG0276|consensus

Probab=100.00  E-value=7.7e-34  Score=230.22  Aligned_cols=220  Identities=27%  Similarity=0.448  Sum_probs=196.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ...+.+.-..-||.++.|-+.-+++++|+.|..|+++|.+|++.+..|+.|.+.++++..+|..-+++++|+|..|++||
T Consensus        46 tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~  125 (794)
T KOG0276|consen   46 TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD  125 (794)
T ss_pred             eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence            44556666677999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc-ceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-CCCEEEEEE
Q psy4653          86 YNTL-ERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASAS  162 (229)
Q Consensus        86 ~~~~-~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~  162 (229)
                      .+.. .+.+.|++|+..|.+++|.|.++ .|++++-|++|++|.+.+. .+..++++|...|.++.+-+. +..+|+||+
T Consensus       126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsga  204 (794)
T KOG0276|consen  126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGA  204 (794)
T ss_pred             ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecC
Confidence            8754 46688999999999999999665 7999999999999999876 557778899999999998653 234999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .|.+|++||.++..++.+++||...|.++.|.+  .-++++|||+||+||||+..+.+...++..+
T Consensus       205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp--~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g  268 (794)
T KOG0276|consen  205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP--ELPIIISGSEDGTVRIWNSKTYKLEKTLNYG  268 (794)
T ss_pred             CCceEEEeecchHHHHHHhhcccccceEEEecC--CCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence            999999999999999999999999999988854  5569999999999999999998877776543

>KOG0296|consensus

Probab=100.00  E-value=1.4e-32  Score=210.39  Aligned_cols=170  Identities=19%  Similarity=0.267  Sum_probs=155.9

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ...|.+|++.|.+++.||+.+++++|+.|..-.+|+..++.....+..|++.|+++.|+.+|.+||||..+|.|+||...
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ++.....+....+.|..+.|||.+..|+.|+.||.+.+|.+.+. ...+++.||..++++-.|.| +|+.++++..|++|
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti  214 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTI  214 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccC-CCceEEEEecCceE
Confidence            98887777656678999999999999999999999999999875 56788999999999999998 69999999999999


Q ss_pred             EEEeCCCCCceE
Q psy4653         168 KVWQLGSASPNF  179 (229)
Q Consensus       168 ~~wd~~~~~~~~  179 (229)
                      ++|+.+++.+++
T Consensus       215 ~~Wn~ktg~p~~  226 (399)
T KOG0296|consen  215 IVWNPKTGQPLH  226 (399)
T ss_pred             EEEecCCCceeE
Confidence            999998865544

>KOG0265|consensus

Probab=100.00  E-value=1e-32  Score=206.47  Aligned_cols=215  Identities=20%  Similarity=0.345  Sum_probs=186.1

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC-CCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE-TNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      -.+.||+..|+.+.|+|+|+.|++|+.|..|.+|+.. ..+...+++.|..+|..+.|.++++.|++++.|.+++.||.+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            3478999999999999999999999999999999954 456677788999999999999999999999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      +++.++.++.|.+.|+++.-+.-+. ++.+++.|++++|||++... +.++++ -..+++.+.|.. +.....+|+-|+.
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~  197 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKD-TSDQVISGGIDND  197 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEecc-cccceeeccccCc
Confidence            9999999999999999999666666 45688999999999998653 334443 245688899985 6789999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC----eEEEeeccC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK----TCVQTLESG  228 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~~  228 (229)
                      |++||++....++.+.+|.++|..+..++  ++.++.+-+.|.++++||++..    .|++.++++
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~--~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSR--YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEecc--CCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence            99999999999999999999999998855  5568999999999999999853    467766654

>KOG0282|consensus

Probab=100.00  E-value=4e-34  Score=225.55  Aligned_cols=207  Identities=21%  Similarity=0.376  Sum_probs=183.0

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVF   84 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iw   84 (229)
                      ...++|.||..+|..++|+++|..+++++.|+.+++||+++|+++..+... ....|+.|.|++ +.+++|+.|++|+.|
T Consensus       249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~w  327 (503)
T KOG0282|consen  249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQW  327 (503)
T ss_pred             ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEE
Confidence            456789999999999999999999999999999999999999999888754 468999999998 899999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee------------------------------
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC------------------------------  134 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~------------------------------  134 (229)
                      |+++++.++.+..|-+.|..+.|-+++..+++++.|+++++|+.+.+-..                              
T Consensus       328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN  407 (503)
T KOG0282|consen  328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN  407 (503)
T ss_pred             eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence            99999999999999999999999999999999999999999996542110                              


Q ss_pred             ---------------eeeeecce--eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCC
Q psy4653         135 ---------------QQVFEGHT--HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG  197 (229)
Q Consensus       135 ---------------~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~  197 (229)
                                     .+.|+||.  ++-..+.|+| |+.+|++|..||.+.+||.++.+.+..++.|...+..++|++..
T Consensus       408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             eEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence                           12245663  4456788998 79999999999999999999999999999999999999997654


Q ss_pred             CcCEEEEeeCCCeEEEEE
Q psy4653         198 DKPYLISGADDRLVKIWD  215 (229)
Q Consensus       198 ~~~~l~s~s~d~~i~iwd  215 (229)
                       ...+|||+.||.|++||
T Consensus       487 -~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  487 -PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -cceeEecccCceeEecC
Confidence             34799999999999996

>KOG0284|consensus

Probab=100.00  E-value=2.5e-34  Score=222.72  Aligned_cols=218  Identities=22%  Similarity=0.399  Sum_probs=192.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+..-+.+|..+|.++.|++++.++++|..+|.|+.|+.+-.........+...|++++|+|++..+++++.||.|+|||
T Consensus       129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence            33445778999999999999999999999999999999886544434344557899999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      ....+.-..+.+|.-.|.|++|||....++++|.|..|++||.+.+ .+...+.+|+..|+.+.|++ ++++|+|+|.|.
T Consensus       209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~  286 (464)
T KOG0284|consen  209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQ  286 (464)
T ss_pred             ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc-chhhhhhhccceEEEEEEcC-CCCeeEEccCCc
Confidence            9888877788999999999999999999999999999999999877 56667788999999999998 579999999999


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .++++|+++-+.++.+++|...+.++.|++- ...+|.+|+.||.|..|.+-..+.+..++
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~-~~~lftsgg~Dgsvvh~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPL-NESLFTSGGSDGSVVHWVVGLEEPLGEIP  346 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchhhheeeccccc-cccceeeccCCCceEEEeccccccccCCC
Confidence            9999999988889999999999999999765 34589999999999999998666665544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.4e-31  Score=207.13  Aligned_cols=215  Identities=30%  Similarity=0.546  Sum_probs=190.2

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      +++.+|..+|.+++|+|+++.+++++.||.|.+||..+++....+..+...+..+.|.|+++.|++++.|+.|.+||++.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            56789999999999999999999999999999999999888888888888889999999999999999999999999998


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ++.+..+..|...|.++.|++++.++++++.|+.|++||+... .....+..|...+..+.++| ++.++++++.|+.++
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~  160 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK  160 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEE
Confidence            8888888889989999999999888888888999999999855 34555667888899999998 477888888899999


Q ss_pred             EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +||++..++...+..|...+.+++|.+  ++..+++++.|+.|++||+++++.+..++.
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~  217 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTGKCLGTLRG  217 (289)
T ss_pred             EEEccccccceeEecCccccceEEECC--CcCEEEEecCCCcEEEEECCCCceecchhh
Confidence            999998888888888888899999854  445788888899999999998888777643

>KOG0277|consensus

Probab=100.00  E-value=2.4e-33  Score=205.63  Aligned_cols=221  Identities=18%  Similarity=0.329  Sum_probs=188.1

Q ss_pred             cchhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcC-CCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCe
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHE-TNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQ   80 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~   80 (229)
                      .+++.+.|. -.+.+..++|++.. ..+++++.||+++|||+. ..+++..++.|+.+|.++.|++.. ..++++|+|++
T Consensus        50 gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T  128 (311)
T KOG0277|consen   50 GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT  128 (311)
T ss_pred             CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence            345555555 56899999999975 567778899999999964 346788999999999999999864 46888899999


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      |++|+.+....++++.+|...|....|+|..+ .++++|.|+.+++||++...+.+. ++.|...+.+..|+..+...++
T Consensus       129 iKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~  207 (311)
T KOG0277|consen  129 IKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLA  207 (311)
T ss_pred             eEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEE
Confidence            99999999999999999999999999999755 678999999999999987755444 7889989999999988899999


Q ss_pred             EEECCCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC-eEEEeecc
Q psy4653         160 SASLDRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TCVQTLES  227 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~  227 (229)
                      ||+.|+.||.||++.- .|++++.+|.-.|..+.|++.. ..+|+|+|.|-++||||...+ .++.+.+.
T Consensus       208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-~~lLaSasYDmT~riw~~~~~ds~~e~~~~  276 (311)
T KOG0277|consen  208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-ASLLASASYDMTVRIWDPERQDSAIETVDH  276 (311)
T ss_pred             ecCCCceEEEEehhhccccceeecCCceEEEEEecCcch-hhHhhhccccceEEecccccchhhhhhhhc
Confidence            9999999999999764 5899999999999999997643 458999999999999999754 45555443

>KOG0319|consensus

Probab=100.00  E-value=5.5e-33  Score=228.62  Aligned_cols=216  Identities=24%  Similarity=0.380  Sum_probs=187.7

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC----eEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ----NVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVF   84 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iw   84 (229)
                      -+.||++.|.+++..-+|.+|++|+.|+++++|.++.+.    ++.....|...|.++.++..+ .+|+++|.|+++++|
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            578999999999966688889999999999999885432    344556788889999997654 589999999999999


Q ss_pred             ECCCcceE-----E----EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          85 NYNTLERF-----H----SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        85 d~~~~~~~-----~----~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      ++...+..     .    ...+|.+.|+|++++|++++++|||.|++.+||++++. ....++.||.-.+.++.|+|. .
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~-d  517 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKN-D  517 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccc-c
Confidence            98753321     1    22478999999999999999999999999999999854 678899999999999999984 5


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      ..++|+|.|++|++|.+.+-+++.++.||...|.-..|..++  ..|+||+.||-|+||++++++|++++++|.
T Consensus       518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~--~qliS~~adGliKlWnikt~eC~~tlD~H~  589 (775)
T KOG0319|consen  518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG--KQLISAGADGLIKLWNIKTNECEMTLDAHN  589 (775)
T ss_pred             ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC--cEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence            799999999999999999999999999999999999997644  479999999999999999999999999874

>KOG0282|consensus

Probab=100.00  E-value=1.3e-33  Score=222.79  Aligned_cols=218  Identities=22%  Similarity=0.392  Sum_probs=187.2

Q ss_pred             hhhcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCC-CCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHET-NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ...+.||+..|.++.|.| .+.+|++++.|+.|+|||+.. ++++++|..|..+|..+.|+.+|..+++++-|+.|++||
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            456899999999999999 788889999999999999977 889999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      +++|+++..+.. ...+.|+.|+|++ +.|++|+.|+.|+.||++.+ .+.+.+..|-+.|..+.|-+ ++..|+|.+.|
T Consensus       287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~-~g~rFissSDd  363 (503)
T KOG0282|consen  287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVD-EGRRFISSSDD  363 (503)
T ss_pred             cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEcc-CCceEeeeccC
Confidence            999999887753 3467899999998 68899999999999999887 45666778889999999987 68999999999


Q ss_pred             CcEEEEeCCCCCceE----------------------------------------------EEecCCCceEEEEEEeCCC
Q psy4653         165 RTVKVWQLGSASPNF----------------------------------------------TLEGHEKGVNCVDYYHGGD  198 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~----------------------------------------------~~~~h~~~v~~~~~~~~~~  198 (229)
                      +++++|+.+...++.                                              .+++|..+-.++....+++
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            999999987642211                                              2345654433333334678


Q ss_pred             cCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         199 KPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +.+|++|+.||.+.+||.++-+.+.++.+|
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             CCeEEeecCCccEEEeechhhhhhhccccC
Confidence            889999999999999999999999988877

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=8.5e-31  Score=220.06  Aligned_cols=210  Identities=12%  Similarity=0.150  Sum_probs=164.1

Q ss_pred             hhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCC--------eEEEEEecCcCeEEEEEcCCCCE-EEEEeC
Q psy4653           8 KRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQ--------NVKSFEVCDLPVRAAKFVPRKNW-IVTGSD   77 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~   77 (229)
                      ...+.+|+.+|.+++|+|+ +..|++|+.|+.|++||+.++.        .+..+..|...|.++.|+|++.. |++|+.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            3568899999999999997 7889999999999999998642        23456778889999999998875 579999


Q ss_pred             CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEE-----EcC
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV-----INP  152 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~-----~~~  152 (229)
                      |+.|++||+++++.+..+. |...|.+++|+|++.+|++++.|+.|+|||++.+. ....+.+|.+.+....     +++
T Consensus       147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~gH~g~~~s~~v~~~~fs~  224 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFHIHDGGKNTKNIWIDGLGG  224 (568)
T ss_pred             CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEecccCCceeEEEEeeeEcC
Confidence            9999999999888776665 56789999999999999999999999999998764 4456788876554332     334


Q ss_pred             CCCCEEEEEECCC----cEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         153 KDNNTFASASLDR----TVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       153 ~~~~~l~s~~~d~----~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                       ++.+++|++.|+    .|++||++. .+++..+..+...-..+-++..+++.++++|+.|+.|++|++..+.
T Consensus       225 -d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        225 -DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             -CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence             567888887664    799999985 5566555433221111222234556789999999999999998764

>KOG0645|consensus

Probab=100.00  E-value=3.5e-31  Score=195.79  Aligned_cols=203  Identities=26%  Similarity=0.480  Sum_probs=173.8

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL-   89 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-   89 (229)
                      +|++.|.+++|+|.|++|++++.|.++.||.=..+  +++..+++|+.+|.|++|+++|++||+++.|.++.||.+... 
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            79999999999999999999999999999987755  567889999999999999999999999999999999988633 


Q ss_pred             --ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC--CceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          90 --ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        90 --~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                        ++...++.|..-|..+.|||...+|+++|.|.+|++|+-.  +.+.+.+.+.+|...|.+++|++ .+..|++++.|+
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~  217 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDG  217 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCc
Confidence              4567789999999999999999999999999999999865  45678888999999999999998 678999999999


Q ss_pred             cEEEEeCCCC------C--------------------------------ceE-----EEecCCCceEEEEEEeCCCcCEE
Q psy4653         166 TVKVWQLGSA------S--------------------------------PNF-----TLEGHEKGVNCVDYYHGGDKPYL  202 (229)
Q Consensus       166 ~i~~wd~~~~------~--------------------------------~~~-----~~~~h~~~v~~~~~~~~~~~~~l  202 (229)
                      ++++|-+.+.      .                                +.+     .-..|...|+++.|.+. ..++|
T Consensus       218 tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-~~~~L  296 (312)
T KOG0645|consen  218 TVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-VSNRL  296 (312)
T ss_pred             ceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-CCCce
Confidence            9999973221      0                                000     11257778999999653 34589


Q ss_pred             EEeeCCCeEEEEECC
Q psy4653         203 ISGADDRLVKIWDYQ  217 (229)
Q Consensus       203 ~s~s~d~~i~iwd~~  217 (229)
                      ++|+.||.|++|.+.
T Consensus       297 ~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  297 ASGGDDGIVNFWELE  311 (312)
T ss_pred             eecCCCceEEEEEec
Confidence            999999999999874

>KOG0285|consensus

Probab=100.00  E-value=1.8e-32  Score=209.58  Aligned_cols=214  Identities=25%  Similarity=0.439  Sum_probs=194.9

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +++-++.||-..|..+++|+..++||+++.|+.|+.||++..+.++.|.+|-..|.|++..|..+.|++|+.|..+++||
T Consensus       184 ~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWD  263 (460)
T KOG0285|consen  184 QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD  263 (460)
T ss_pred             eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEee
Confidence            56677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      +++...+..+.+|...|..+.+.|..+.+++|+-|++|++||+..++. ..+...|...+.+++.+| ....|||++.| 
T Consensus       264 iRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP-~e~~fASas~d-  340 (460)
T KOG0285|consen  264 IRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHP-KENLFASASPD-  340 (460)
T ss_pred             ecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCC-chhhhhccCCc-
Confidence            999999999999999999999999999999999999999999987744 455567888899999999 57899999988 


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      .|+-|++..+..+..+.+|..-+++++.+.  ++ ++++|+++|.+.+||.+++-+-+..
T Consensus       341 nik~w~~p~g~f~~nlsgh~~iintl~~ns--D~-v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  341 NIKQWKLPEGEFLQNLSGHNAIINTLSVNS--DG-VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             cceeccCCccchhhccccccceeeeeeecc--Cc-eEEEcCCceEEEEEecCcCcccccc
Confidence            599999999998889999999999998742  33 7999999999999999988655544

>KOG0281|consensus

Probab=100.00  E-value=2e-33  Score=214.39  Aligned_cols=202  Identities=23%  Similarity=0.426  Sum_probs=177.0

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ....+.+.||+..|.|+.|..  +.+++|+.|.+|++||+++++++.++-.|.++|..+.|+  .+++++++.|.+|.+|
T Consensus       227 ~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVW  302 (499)
T KOG0281|consen  227 LECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVW  302 (499)
T ss_pred             HHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEE
Confidence            355678999999999999864  489999999999999999999999999999999999998  4689999999999999


Q ss_pred             ECCCcc---eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          85 NYNTLE---RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        85 d~~~~~---~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      |.....   ..+.+.+|.+.|+.+.|+.  +++++++.|.+|++|++... .+.+++.+|.-.|.++.+   .+.+++||
T Consensus       303 dm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQY---r~rlvVSG  376 (499)
T KOG0281|consen  303 DMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY---RDRLVVSG  376 (499)
T ss_pred             eccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce-eeehhhhcccccceehhc---cCeEEEec
Confidence            986533   2355779999999999976  59999999999999999776 456778899888888876   46899999


Q ss_pred             ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +.|.+||+||+..+.++..++||++-|.|+.|    +...+++|..||+|++||+..+.
T Consensus       377 SSDntIRlwdi~~G~cLRvLeGHEeLvRciRF----d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  377 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             CCCceEEEEeccccHHHHHHhchHHhhhheee----cCceeeeccccceEEEEeccccc
Confidence            99999999999999999999999999999999    33469999999999999997653

>KOG0315|consensus

Probab=100.00  E-value=4.3e-31  Score=193.37  Aligned_cols=214  Identities=22%  Similarity=0.385  Sum_probs=179.6

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ++.--...|+.|...|++..|++++ ...|++||+++++  ++..|..+...|.++.|..+|+++.+|+.||+++|||++
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            3443445899999999999888877 5799999999875  488999998999999999999999999999999999998


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      .-.+-+.++ |...|+++..+|+..-|+++.++|.|++||+..........+.-...|.++.+.| ++.+++.+..-|++
T Consensus       114 ~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~c  191 (311)
T KOG0315|consen  114 SLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNC  191 (311)
T ss_pred             Ccccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccE
Confidence            855544454 7799999999999999999999999999999876443444444556788899998 79999999999999


Q ss_pred             EEEeCCCC------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC-eEEEeeccC
Q psy4653         168 KVWQLGSA------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TCVQTLESG  228 (229)
Q Consensus       168 ~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~  228 (229)
                      ++|++-..      +|+..++.|...+..+.+  +++.++|+|+|.|.+++||+.+.. +.-..+++|
T Consensus       192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l--SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh  257 (311)
T KOG0315|consen  192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLL--SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH  257 (311)
T ss_pred             EEEEccCCCccccceEhhheecccceEEEEEE--CCCCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence            99998543      456678889888877777  557789999999999999999987 666677665

>KOG0319|consensus

Probab=100.00  E-value=1.4e-31  Score=220.32  Aligned_cols=223  Identities=23%  Similarity=0.378  Sum_probs=193.1

Q ss_pred             ccchhhhhcccCCCceEEEEE-ccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653           3 LRLDIKRKLTARSDRVKCCDL-HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      +.+++.+++-|..++|..++| .|+.++|++++..+.+++++..+..+. .+.+|.+.|.++....+|.+|++|+.|.++
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv  389 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV  389 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence            456788899999999999886 788899999999999999999987775 778999999999966678899999999999


Q ss_pred             EEEECCCcc----eEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCce--------eeeeeeecceeeEEEE
Q psy4653          82 CVFNYNTLE----RFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAW--------ACQQVFEGHTHYVMQI  148 (229)
Q Consensus        82 ~iwd~~~~~----~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~--------~~~~~~~~~~~~v~~~  148 (229)
                      ++|.++.+.    ++....+|+..|.+++++..+. +|+++|.|.++++|++...+        .+..+...|...|+++
T Consensus       390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V  469 (775)
T KOG0319|consen  390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV  469 (775)
T ss_pred             EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence            999884432    4566789999999999987665 78999999999999997611        1122345789999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +++| +..+++|||.|++.++|++.......++.+|..++.|+.|.+.  .++++|+|.|++|+||.+.++.|++|+++|
T Consensus       470 aia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~--dq~laT~SgD~TvKIW~is~fSClkT~eGH  546 (775)
T KOG0319|consen  470 AIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN--DQLLATCSGDKTVKIWSISTFSCLKTFEGH  546 (775)
T ss_pred             EecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc--cceeEeccCCceEEEEEeccceeeeeecCc
Confidence            9999 5789999999999999999988888999999999999999654  358999999999999999999999999987


Q ss_pred             C
Q psy4653         229 I  229 (229)
Q Consensus       229 ~  229 (229)
                      .
T Consensus       547 ~  547 (775)
T KOG0319|consen  547 T  547 (775)
T ss_pred             c
Confidence            3

>KOG0293|consensus

Probab=100.00  E-value=6.6e-32  Score=209.81  Aligned_cols=213  Identities=19%  Similarity=0.270  Sum_probs=173.0

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      .+..+.+..|+++|+=+.|||+|++||+++.|.+..+|.+....   ...++.+|..+|..+.|+|++++|++++.|..+
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            35667789999999999999999999999999999999986543   356777888999999999999999999999999


Q ss_pred             EEEECCCcceEEEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee----------------------eeeee
Q psy4653          82 CVFNYNTLERFHSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA----------------------CQQVF  138 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~----------------------~~~~~  138 (229)
                      ++||+.+++..+.+.. +...+.+.+|.||+..+++|+.|+++..||++.+..                      +..+.
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence            9999999988776643 457899999999999999999999999999764210                      00000


Q ss_pred             e------------------cceeeEEEE--------------------------------------------EEcCCCCC
Q psy4653         139 E------------------GHTHYVMQI--------------------------------------------VINPKDNN  156 (229)
Q Consensus       139 ~------------------~~~~~v~~~--------------------------------------------~~~~~~~~  156 (229)
                      .                  .-..+|+..                                            +|--.+..
T Consensus       374 ~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~  453 (519)
T KOG0293|consen  374 VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK  453 (519)
T ss_pred             cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence            0                  001122222                                            22222446


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .++|||.|+.|++|+..+++++.++.||...|+|++|.|. +..++|+||+||+||||....
T Consensus       454 fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~-~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  454 FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA-DPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC-CHHHhhccCCCCeEEEecCCc
Confidence            8999999999999999999999999999999999999754 445899999999999998764

>KOG0277|consensus

Probab=100.00  E-value=4.8e-32  Score=198.82  Aligned_cols=209  Identities=23%  Similarity=0.353  Sum_probs=183.2

Q ss_pred             hhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVF   84 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iw   84 (229)
                      .-+.++.|+.+|.++.|++. +..++++++|++|++|+..-++.+.+|.+|+.-|....|+|. +++++++|.|+.+++|
T Consensus        96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw  175 (311)
T KOG0277|consen   96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW  175 (311)
T ss_pred             chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence            45678999999999999995 567788899999999999999999999999999999999995 7899999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      |++.......+..|...|.|+.|+.- ...++||+.|+.|++||++....+...+.+|.-.|..+.++|....+|+|++.
T Consensus       176 dvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY  255 (311)
T KOG0277|consen  176 DVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY  255 (311)
T ss_pred             EecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc
Confidence            99765444558999999999999974 45788999999999999998777777788999999999999998899999999


Q ss_pred             CCcEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         164 DRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       164 d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      |-++|+||... ...+.+...|++-+-.++|+.- ...++|+++-|+.++||+.
T Consensus       256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~-~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF-DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cceEEecccccchhhhhhhhccceEEeccccccc-cCceeeecccccceeeecc
Confidence            99999999864 4455566778888888998754 4458999999999999984

>KOG0275|consensus

Probab=100.00  E-value=2.3e-32  Score=207.24  Aligned_cols=212  Identities=25%  Similarity=0.409  Sum_probs=185.2

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE--------EEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS--------FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      |.+.-+.|..|+||+++|++|+.||.|.+||.-+|+..+-        |--.+++|.|+.|+.+...|++|+-||+|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            5667799999999999999999999999999999976443        22346789999999999999999999999999


Q ss_pred             ECCCcceEEEec-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          85 NYNTLERFHSFE-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        85 d~~~~~~~~~~~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      .++++.+++.|. +|+..|+|+.|+.++..+++++.|.++++--++.+ ++.+.|.||+++|+...|.+ ++..+++++.
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~-dG~~iisaSs  368 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTD-DGHHIISASS  368 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcC-CCCeEEEecC
Confidence            999999999986 89999999999999999999999999999999876 67888999999999999987 7999999999


Q ss_pred             CCcEEEEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         164 DRTVKVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ||+|++|+.++.+++.+++.  ...+|+.+-..+.. ...++.+...++|.|-++. |+.++.+.++
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKn-peh~iVCNrsntv~imn~q-GQvVrsfsSG  433 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKN-PEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG  433 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCC-CceEEEEcCCCeEEEEecc-ceEEeeeccC
Confidence            99999999999988877754  34567877766543 3467888888999998886 6677777655

>KOG0274|consensus

Probab=100.00  E-value=4.2e-31  Score=221.09  Aligned_cols=209  Identities=26%  Similarity=0.460  Sum_probs=190.1

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ...+.||...|.+++|..-++.|++|+.|.++++||..+|++...+..|...+.++...+  ..+++|+.|.+|++|+++
T Consensus       242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEecc
Confidence            344889999999999998888999999999999999999999999999988888876654  578889999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ++..++.+.+|.+.|+++.++  +.++++|+.|++|++||.... ++...+.+|...|.++.+.+.  ..+++|+.|++|
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI  394 (537)
T ss_pred             CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence            999999999999999999998  789999999999999999855 788889999999999988642  799999999999


Q ss_pred             EEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         168 KVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       168 ~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++||+++. +++.++.+|...+..+.+    ..++|++++.|++|++||..++++++++++
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v~~l~~----~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLVSSLLL----RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             EeecCCchhhhhhhhcCCccccccccc----ccceeEeccccccEEEeecccCceeeeecc
Confidence            99999999 899999999988877766    345899999999999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.4e-30  Score=226.40  Aligned_cols=212  Identities=18%  Similarity=0.276  Sum_probs=175.5

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC----C----eEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN----Q----NVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQV   81 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i   81 (229)
                      +.+|...|.+++|+|+++++++|+.|+.|++||..+.    .    ....+. ....+.++.|++. +++|++++.||.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            5569999999999999999999999999999998642    1    111222 2457899999874 7899999999999


Q ss_pred             EEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          82 CVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+..... ...+..+ ..+.++.|++.++.+|++
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSLAF  635 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEEEE
Confidence            9999999999999999999999999997 678999999999999999986533 3344433 568888887667899999


Q ss_pred             EECCCcEEEEeCCCCC-ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC------eEEEeeccC
Q psy4653         161 ASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK------TCVQTLESG  228 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~------~~~~~~~~~  228 (229)
                      |+.|+.|++||++... ++..+.+|...|.++.|.   ++.+|++++.|++|+|||++.+      +++.++++|
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~---~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh  707 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH  707 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe---CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence            9999999999998765 567788999999999994   3458999999999999999743      566666554

>KOG0291|consensus

Probab=99.98  E-value=1.7e-30  Score=214.63  Aligned_cols=209  Identities=22%  Similarity=0.369  Sum_probs=180.1

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      +.+.+.+.-...+|..+.|+..|.+++.|+ .-|++.+|++.+-.-+.+.++|-..+.++.++|+|+++|+|+.||+|+|
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            444455565557899999999999999987 4599999999987666666777889999999999999999999999999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-eeeEEEEEEcCCCCCEEEEEE
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-THYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ||...+-++.+|..|+..|+++.|+..++.+++++-||+|+.||+.+. ...++|... .-...+++..| .|.++..|+
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~QfscvavD~-sGelV~AG~  454 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDP-SGELVCAGA  454 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEEEEcC-CCCEEEeec
Confidence            999999999999999999999999999999999999999999999765 334455432 33456788887 577888888


Q ss_pred             CCC-cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         163 LDR-TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       163 ~d~-~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      .|. .|.+|++++++.+-.+.||+++|.+++|.+  .+..|+|||.|++||+||+-
T Consensus       455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~--~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP--DGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             cceEEEEEEEeecCeeeehhcCCCCcceeeEEcc--ccCeEEeccccceEEEEEee
Confidence            776 899999999999999999999999999955  45589999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=1.9e-29  Score=196.34  Aligned_cols=217  Identities=29%  Similarity=0.516  Sum_probs=190.1

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ...+.+|...+.++.|+|+++.+++++.||.|++||+.+++.+..+..+...+.++.|+++++++++++.|+.+.+||++
T Consensus        44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            34567888999999999999999999999999999999988888888888889999999998899999889999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      +++....+..|...|.++.|+|++.++++++.|+.|++||++.. .....+..|...+..+.++| ++..+++++.|+.+
T Consensus       124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i  201 (289)
T cd00200         124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTI  201 (289)
T ss_pred             CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECC-CcCEEEEecCCCcE
Confidence            88888888889999999999999888888888999999999755 34555667888899999998 56788888889999


Q ss_pred             EEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++||++....+..+..|...+.++.|.+  ++.++++++.|+.|++||+++++.+..++.+
T Consensus       202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~  260 (289)
T cd00200         202 KLWDLSTGKCLGTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQTLSGH  260 (289)
T ss_pred             EEEECCCCceecchhhcCCceEEEEEcC--CCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence            9999998888888878888999999854  3567888888999999999998888877643

>KOG0294|consensus

Probab=99.98  E-value=4.2e-30  Score=193.67  Aligned_cols=211  Identities=17%  Similarity=0.357  Sum_probs=179.0

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC--EEEEEeCCCeEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVC   82 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~i~   82 (229)
                      +...-.+..|...+.|++.+  ++++++|+.|.+|+|||+.+.+.+..+-.|...++++.|.++-.  .|++|+.||+|.
T Consensus        33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            34455688999999999986  88999999999999999999999888888999999999998754  899999999999


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee----------eeecc-----------
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ----------VFEGH-----------  141 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~----------~~~~~-----------  141 (229)
                      +|+....+.+..+++|.+.|+.+++||.+++.++.+.|+.+++||+-++.....          .+...           
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence            999999999999999999999999999999999999999999999854321100          00000           


Q ss_pred             ---------------eee--EEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE
Q psy4653         142 ---------------THY--VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS  204 (229)
Q Consensus       142 ---------------~~~--v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  204 (229)
                                     ..+  +.++-|  .++..+++|+.|..|++||.....+...+.+|...|..+.++.++.+.+|+|
T Consensus       191 i~i~q~d~A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             EEEEecccHhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence                           011  122222  3567899999999999999999999999999999999999887778889999


Q ss_pred             eeCCCeEEEEECCCC
Q psy4653         205 GADDRLVKIWDYQNK  219 (229)
Q Consensus       205 ~s~d~~i~iwd~~~~  219 (229)
                      +|.||.|++||++..
T Consensus       269 aSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  269 ASSDGFIKVWDIDME  283 (362)
T ss_pred             eccCceEEEEEcccc
Confidence            999999999999876

>KOG0273|consensus

Probab=99.98  E-value=2.5e-30  Score=203.75  Aligned_cols=210  Identities=23%  Similarity=0.327  Sum_probs=186.1

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      +..|++|+|+.+|..|++|..||.+++|+... .++..+..|..+|.++.|+.+|++|++++.|+++.+||.-+++....
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            35899999999999999999999999999875 66688889999999999999999999999999999999999888888


Q ss_pred             eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653          95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      +.-|...-..|.|-.+ .-|++++.|+.|.|+.+... .+...+.+|.+.|..+.|+| .+.+|+|++.|+++++|.+..
T Consensus       314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             eeeccCCccceEEecC-ceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCC
Confidence            8888877566777554 45889999999999999654 55677889999999999999 689999999999999999998


Q ss_pred             CCceEEEecCCCceEEEEEEeCC-------CcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         175 ASPNFTLEGHEKGVNCVDYYHGG-------DKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       175 ~~~~~~~~~h~~~v~~~~~~~~~-------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ......++.|+..|..+.|.+.+       .+..|++++.|++|++||+..+.++.+++-|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH  451 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH  451 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence            88888999999999999887533       2457999999999999999999999999655

>KOG0313|consensus

Probab=99.97  E-value=3.5e-30  Score=198.16  Aligned_cols=206  Identities=21%  Similarity=0.377  Sum_probs=179.1

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-------------------------CCeEEEEEecCcCeEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-------------------------NQNVKSFEVCDLPVRA   62 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-------------------------~~~~~~~~~~~~~v~~   62 (229)
                      .+.-.||.+.|.+++..+++..+++|++|..+.+|+..+                         +.++..+.+|.++|.+
T Consensus       186 ~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~  265 (423)
T KOG0313|consen  186 LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS  265 (423)
T ss_pred             HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence            333459999999999999999999999999999999221                         1234556788899999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce--eeeeeeec
Q psy4653          63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEG  140 (229)
Q Consensus        63 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~  140 (229)
                      +.|.+ ...+.+++.|-+|+.||+++++....+. ....++|+.++|..+++++|+.|..+++||.+.+.  .....+.+
T Consensus       266 V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g  343 (423)
T KOG0313|consen  266 VVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG  343 (423)
T ss_pred             EEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence            99998 6688999999999999999988876665 34679999999999999999999999999987653  35677899


Q ss_pred             ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       141 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      |...|..+.|+|.+..+|+||+.|+++++||+++.+ +++.+.+|.+.|.+++|.   ++.+++||+.|++|+|+....
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~---~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN---EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc---CCceEEeccCcceEEEecccc
Confidence            999999999999999999999999999999999887 999999999999999994   334799999999999987653

>KOG0310|consensus

Probab=99.97  E-value=2.4e-30  Score=204.49  Aligned_cols=218  Identities=27%  Similarity=0.425  Sum_probs=184.2

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCV   83 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~i   83 (229)
                      .+..+++.-..+-|++++|-.||..|++|...|.|+++|..+...++.+..|+.++..+.|+|.++ .|++|++|+.+++
T Consensus        58 ~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~  137 (487)
T KOG0310|consen   58 RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY  137 (487)
T ss_pred             hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence            356677888889999999999999999999999999999777667788899999999999999766 6888889999999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ||+.+......+.+|++.|+|.+|+|... +++|||.||+|++||++........ -.|..+|..+.+-| .+.+++|++
T Consensus       138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lp-sgs~iasAg  215 (487)
T KOG0310|consen  138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALP-SGSLIASAG  215 (487)
T ss_pred             EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcC-CCCEEEEcC
Confidence            99998776567899999999999999654 7899999999999999765322222 35888999999988 578999877


Q ss_pred             CCCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         163 LDRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       163 ~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                       ...+++||+-++ +.+..+..|...|.|+++..  ++..|+||+-|+.|++||+.+.+.+..+..
T Consensus       216 -Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s--~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~  278 (487)
T KOG0310|consen  216 -GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS--DSTRLLSGSLDRHVKVFDTTNYKVVHSWKY  278 (487)
T ss_pred             -CCeEEEEEecCCceehhhhhcccceEEEEEeec--CCceEeecccccceEEEEccceEEEEeeec
Confidence             568999999855 44445556999999999954  556899999999999999999988887754

>KOG0265|consensus

Probab=99.97  E-value=4e-30  Score=192.57  Aligned_cols=216  Identities=20%  Similarity=0.298  Sum_probs=185.1

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~   88 (229)
                      +++||+..|+.+.|.+++..+++++.|++|+.||+++|+.+++++.|..-+.++.-..-| .++.+|+.|+++++||++.
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            467999999999999999999999999999999999999999999999888888744333 4688899999999999998


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      .+.++.+. ..-.++++.|..++..+++|+-|+.|++||++++ ....+..||..+|+.+..++ ++..+++-+.|.+++
T Consensus       165 k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvr  241 (338)
T KOG0265|consen  165 KEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVR  241 (338)
T ss_pred             cchhhccc-cceeEEEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEecc-CCCccccccccceEE
Confidence            77776664 3456899999999999999999999999999876 56788899999999999998 689999999999999


Q ss_pred             EEeCCCC----CceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         169 VWQLGSA----SPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       169 ~wd~~~~----~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +||++.-    .++..+++|..  ..+.+.+..+++.+.+.+|+.|+.+++||..+..++-+|.+|
T Consensus       242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh  307 (338)
T KOG0265|consen  242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH  307 (338)
T ss_pred             EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc
Confidence            9998742    33666666543  345555555667778999999999999999999999888876

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=6.6e-29  Score=220.34  Aligned_cols=202  Identities=19%  Similarity=0.284  Sum_probs=175.1

Q ss_pred             CCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          15 SDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        15 ~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ..+|.+++|+|. +..|++++.||.|++||+.+++.+..+..|...|.++.|+| ++++|++|+.|+.|++||++++..+
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            468999999885 77899999999999999999999999989999999999997 6889999999999999999988888


Q ss_pred             EEeccCCCceeEEEEc-CCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          93 HSFEAHSDYVRCVAVH-PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~-~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      ..+..+ ..|.++.|+ +++.++++|+.|+.|++||++........+.+|...|..+.|.  ++.++++++.|++|++||
T Consensus       612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEe
Confidence            887754 578999995 5788999999999999999987644456677899999999996  467999999999999999


Q ss_pred             CCC------CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         172 LGS------ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       172 ~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      ++.      ..++..+.+|...+.+++|.+  ++.+|++|+.|+.|++|+......
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~--~~~~lasgs~D~~v~iw~~~~~~~  742 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMP  742 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcC--CCCEEEEEeCCCEEEEEECCCCCc
Confidence            974      356778899998899999854  456999999999999999876543

>KOG0264|consensus

Probab=99.97  E-value=8.4e-30  Score=199.79  Aligned_cols=209  Identities=23%  Similarity=0.368  Sum_probs=179.5

Q ss_pred             hhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCC-------eEEEEEecCcCeEEEEEcCC-CCEEEEEeCC
Q psy4653           8 KRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQ-------NVKSFEVCDLPVRAAKFVPR-KNWIVTGSDD   78 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d   78 (229)
                      .-++.||+++=..++|++.. -.|++++.|+.|.+||+....       ....|..|+..|..++|.+. .+++++.+.|
T Consensus       170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence            34688999988999999975 467788899999999997532       24567788899999999985 5689999999


Q ss_pred             CeEEEEECC--CcceEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          79 MQVCVFNYN--TLERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        79 ~~i~iwd~~--~~~~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      +.+.|||.+  +.+..+..++|.+.|+|++|+|-+ ..|||||.|++|+|||+++..++...+++|...|.++.|+|...
T Consensus       250 ~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e  329 (422)
T KOG0264|consen  250 GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE  329 (422)
T ss_pred             CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence            999999998  566667788999999999999855 46789999999999999998888999999999999999999999


Q ss_pred             CEEEEEECCCcEEEEeCCCC--------------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         156 NTFASASLDRTVKVWQLGSA--------------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      ..|||++.|+++.+||+...              +.++...||...|..++|.+. +...++|.+.|+.+.||.+.
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~-ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN-EPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC-CCeEEEEecCCceEEEeecc
Confidence            99999999999999998531              345788899999998888653 33578999999999999986

>KOG0274|consensus

Probab=99.97  E-value=1.9e-29  Score=211.12  Aligned_cols=205  Identities=27%  Similarity=0.466  Sum_probs=185.7

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE-EEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS-FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      +...+.+..|+  ...+++++.|+++++||..+++.+.. +..|...|.++.+..-++.|++|+.|.++++||.++++++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            55678999999  55699999999999999999999888 9999999999999987899999999999999999999999


Q ss_pred             EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      +.+.+|+..|.++...+  ..+++|+.|.+|++|++.++ .+..++.+|..+|.++..+   +.++++|+.|++|++||.
T Consensus       285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~  358 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP  358 (537)
T ss_pred             EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence            99999999999997766  57788899999999999865 6677788899999999985   579999999999999999


Q ss_pred             CCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC-eEEEeeccCC
Q psy4653         173 GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-TCVQTLESGI  229 (229)
Q Consensus       173 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~  229 (229)
                      .+.+++..+.+|...|.++.+.  +. .++++|+.|++|++||++++ +|+.++..|.
T Consensus       359 ~~~~cl~sl~gH~~~V~sl~~~--~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~  413 (537)
T KOG0274|consen  359 RTGKCLKSLSGHTGRVYSLIVD--SE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT  413 (537)
T ss_pred             hhceeeeeecCCcceEEEEEec--Cc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence            9999999999999999999772  22 68999999999999999999 9999998763

>KOG0296|consensus

Probab=99.97  E-value=1.9e-28  Score=187.79  Aligned_cols=207  Identities=19%  Similarity=0.309  Sum_probs=177.4

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      +.-.+.||++.|.|+.|+.++.+|++|.-+|.|++|...++.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            34457899999999999999999999999999999999999998887655556788999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee----------------------------
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF----------------------------  138 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~----------------------------  138 (229)
                      ..+...+.+.+|+.+++|=.|.|+|+.++++..|++|++|++.+..+...+-                            
T Consensus       178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence            9888889999999999999999999999999999999999976532211110                            


Q ss_pred             ------------------------------------------------------------------ecceeeEEEEEEcC
Q psy4653         139 ------------------------------------------------------------------EGHTHYVMQIVINP  152 (229)
Q Consensus       139 ------------------------------------------------------------------~~~~~~v~~~~~~~  152 (229)
                                                                                        -.|..+|.++.|-+
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~  337 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN  337 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC
Confidence                                                                              01334455666654


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       153 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                        ..+|++++.||.|+.||.+++..++++.+|...|.++++.+  +.++++|+|.|++.++|+..
T Consensus       338 --t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~--~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  338 --TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP--QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             --cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC--CCcEEEEecCCCeEEEEecC
Confidence              36889999999999999999999999999999999999854  66799999999999999864

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.4e-28  Score=203.90  Aligned_cols=207  Identities=16%  Similarity=0.233  Sum_probs=164.2

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE-------------EEEEecCcCeEEEEEcC-CCCEEEEEeCCC
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV-------------KSFEVCDLPVRAAKFVP-RKNWIVTGSDDM   79 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~   79 (229)
                      |...|....+++++..++++..+.....|+...+..+             ..+..|..+|.++.|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            5667788888888777777777776677776544322             13556788999999999 788999999999


Q ss_pred             eEEEEECCCc-------ceEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653          80 QVCVFNYNTL-------ERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        80 ~i~iwd~~~~-------~~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                      .|++||+...       +.+..+.+|...|.+++|+|++ .+|++++.|++|+|||++.. .....+.+|...|.++.|+
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEE
Confidence            9999998754       3467788999999999999986 68999999999999999876 4456678899999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCce-EEEEEEeCCCcCEEEEe----eCCCeEEEEECCCCe-EEEe
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV-NCVDYYHGGDKPYLISG----ADDRLVKIWDYQNKT-CVQT  224 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~----s~d~~i~iwd~~~~~-~~~~  224 (229)
                      | ++.+|++++.|++|++||+++++.+.++.+|.... ..+.|.+  +...++++    +.|+.|++||+++.. ++..
T Consensus       178 p-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        178 L-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK--RKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             C-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC--CCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            8 68999999999999999999999888898987654 3445543  33345543    358999999998653 4433

>KOG1446|consensus

Probab=99.97  E-value=7.9e-28  Score=181.42  Aligned_cols=221  Identities=18%  Similarity=0.305  Sum_probs=174.5

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD--DMQ   80 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~   80 (229)
                      ++|+..+.+.....+|.++.|+++|..|++++.|.+++|||..+++.++.+...+..+..++|....+.++.++.  |..
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            467888889888899999999999999999999999999999999999998888888999999998888888887  889


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      |+..++.+.+.++.|.+|.+.|+.++.+|-+..+++++.|++|++||++.. .+...+..  .....+++.| +|.+||.
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~--~~~pi~AfDp-~GLifA~  157 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNL--SGRPIAAFDP-EGLIFAL  157 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEec--CCCcceeECC-CCcEEEE
Confidence            999999999999999999999999999999999999999999999999743 33333321  1223345565 4566666


Q ss_pred             EECCCcEEEEeCCC-----------------------------------------------CCceEEEecCCCce-EEEE
Q psy4653         161 ASLDRTVKVWQLGS-----------------------------------------------ASPNFTLEGHEKGV-NCVD  192 (229)
Q Consensus       161 ~~~d~~i~~wd~~~-----------------------------------------------~~~~~~~~~h~~~v-~~~~  192 (229)
                      +.....|++||++.                                               +....++..+...- ..+.
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~  237 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS  237 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence            65555666666653                                               33223333332211 1123


Q ss_pred             EEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       193 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ....++++++++|+.||+|.+|++++++.+..+.+
T Consensus       238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            33356788999999999999999999999888875

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.3e-27  Score=199.47  Aligned_cols=191  Identities=16%  Similarity=0.306  Sum_probs=154.7

Q ss_pred             EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCcc--------eEEEeccCCCcee
Q psy4653          33 SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNTLE--------RFHSFEAHSDYVR  103 (229)
Q Consensus        33 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~--------~~~~~~~h~~~i~  103 (229)
                      |+.++.|++|+......+..+..|..+|.++.|+|. +++|++|+.|+.|++||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            446788999998887778888889999999999997 7899999999999999987532        3446788999999


Q ss_pred             EEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe
Q psy4653         104 CVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE  182 (229)
Q Consensus       104 ~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  182 (229)
                      +++|+|++.. +++++.|++|++||++...... .+. |...|.++.|+| ++.+|++++.|+.|++||++++..+.++.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            9999999876 4689999999999998764333 233 456799999998 68999999999999999999999888999


Q ss_pred             cCCCceEEEEEEe---CCCcCEEEEeeCC----CeEEEEECCC-CeEEEeec
Q psy4653         183 GHEKGVNCVDYYH---GGDKPYLISGADD----RLVKIWDYQN-KTCVQTLE  226 (229)
Q Consensus       183 ~h~~~v~~~~~~~---~~~~~~l~s~s~d----~~i~iwd~~~-~~~~~~~~  226 (229)
                      +|...+.+..+..   ++++.+|+|++.|    +.|+|||+++ .+++.++.
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~  258 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS  258 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence            9987665444322   2455678887766    4799999985 56666543

>KOG0640|consensus

Probab=99.97  E-value=6.6e-29  Score=187.23  Aligned_cols=216  Identities=19%  Similarity=0.342  Sum_probs=177.1

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC------C------C------CeEEEEEecCcCeEEEEEcCCCC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE------T------N------QNVKSFEVCDLPVRAAKFVPRKN   70 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~------~------~------~~~~~~~~~~~~v~~~~~~~~~~   70 (229)
                      +-+..|+.++.+.+|+|||.++++|+.|-+|+|.|++      .      +      -.++++-.|-++|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            3467899999999999999999999999999999987      1      1      23566666778999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEe--ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee--eeecceeeEE
Q psy4653          71 WIVTGSDDMQVCVFNYNTLERFHSF--EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ--VFEGHTHYVM  146 (229)
Q Consensus        71 ~l~sg~~d~~i~iwd~~~~~~~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~--~~~~~~~~v~  146 (229)
                      .|++|+.|+.|++||+......+.+  -.-...|.++.|||.|.+++.|..-..+++||+........  --.+|.+.|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            9999999999999998643221111  12346799999999999999999999999999976532211  2356899999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cCCCc-eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKG-VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~-v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      ++.+++ ++.+.++|+.||.|++||--+++++.++. .|.+. |-+..|  ..++.|+++.+.|..+++|.+.++.++++
T Consensus       266 ~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F--tkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  266 QVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF--TKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             EEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE--ccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            999998 78999999999999999998888887774 56654 444444  34677999999999999999999999998


Q ss_pred             ecc
Q psy4653         225 LES  227 (229)
Q Consensus       225 ~~~  227 (229)
                      +++
T Consensus       343 YtG  345 (430)
T KOG0640|consen  343 YTG  345 (430)
T ss_pred             Eec
Confidence            875

>KOG0643|consensus

Probab=99.97  E-value=8.2e-28  Score=177.81  Aligned_cols=214  Identities=13%  Similarity=0.221  Sum_probs=186.7

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .+.||.+++.-+.|+.+|.+|++++.|....+|-...|+.+..|.+|...|.|++.+.+.+.+++|+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeC-----CCcEEEEecCCce------eeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-----DMLIKLWNWEKAW------ACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-----d~~v~lwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      +.+..++. ...|..+.|++++++++....     .+.|.++|+++..      .+......+.+.++.+.|.| -+..|
T Consensus        85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~i  162 (327)
T KOG0643|consen   85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETI  162 (327)
T ss_pred             cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEE
Confidence            99988874 467999999999998776644     4679999987422      22334455667889999998 57899


Q ss_pred             EEEECCCcEEEEeCCCCCce-EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         159 ASASLDRTVKVWQLGSASPN-FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++|..||.|..||++++..+ ...+.|...|+.+.++  .+..+++|+|.|.+-++||+++-++++++..
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s--~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS--RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhcccccccccc--CCcceEEecccCccceeeeccceeeEEEeee
Confidence            99999999999999997554 4457788899999985  4667999999999999999999999999864

>KOG0318|consensus

Probab=99.97  E-value=9.5e-28  Score=191.55  Aligned_cols=216  Identities=19%  Similarity=0.383  Sum_probs=185.0

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE--EEEEecCcCeEEEEEcCCCCEEEEEeCC----Ce
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV--KSFEVCDLPVRAAKFVPRKNWIVTGSDD----MQ   80 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~~   80 (229)
                      ....|.+|..+|+.+.|+|.|-++++|-..|.|+|||....+-+  ..|+....+|..+.|+.+++.|++.++.    |.
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~  130 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH  130 (603)
T ss_pred             ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence            34568999999999999999999999999999999998764332  2455667899999999999887766554    36


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      +.+||.  +..+..+.+|...|++++|-|..++ ++|++.|++|.+|.=. +.+....+..|...|.++.++| |+..|+
T Consensus       131 ~F~~DS--G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysP-DG~~Fa  206 (603)
T KOG0318|consen  131 VFLWDS--GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSP-DGSRFA  206 (603)
T ss_pred             EEEecC--CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECC-CCCeEE
Confidence            777774  4566778899999999999999985 8899999999999843 3345666778999999999999 699999


Q ss_pred             EEECCCcEEEEeCCCCCceEEEe---cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         160 SASLDRTVKVWQLGSASPNFTLE---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |++.|++|.+||-.+++.+.++.   +|.+.|.+++|.  +++..++|+|.|.+++|||+.+.++++++..+
T Consensus       207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs--PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS--PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC--CCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence            99999999999999999999997   899999999994  56778999999999999999999999998754

>KOG0318|consensus

Probab=99.97  E-value=1.4e-27  Score=190.61  Aligned_cols=209  Identities=21%  Similarity=0.307  Sum_probs=178.7

Q ss_pred             hhcccCCCceEEEEEccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      -.+.||+.+|++++|-|..|+-++ |+.|++|-+++-..-+-...++.|..-|.+++|+|+|..+++.+.||+|.+||-.
T Consensus       141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk  220 (603)
T KOG0318|consen  141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK  220 (603)
T ss_pred             ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence            347899999999999999997655 5789999999988777777778888899999999999999999999999999999


Q ss_pred             CcceEEEec---cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce--eeEEEEEEcCCCCCEEEEEE
Q psy4653          88 TLERFHSFE---AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT--HYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        88 ~~~~~~~~~---~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~  162 (229)
                      +++.+..+.   +|.+.|.+++|+||++.+++++.|++++|||+...........+..  ..-..+.|   +...|++-+
T Consensus       221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd~lItVS  297 (603)
T KOG0318|consen  221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKDHLITVS  297 (603)
T ss_pred             CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---eCCeEEEEE
Confidence            999998887   8999999999999999999999999999999987743333222222  22333344   256899999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      .+|+|.+++....++++.+.+|...|.++...  +++.+|.||+.||.|.-||..++.+-
T Consensus       298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~--~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  298 LSGTINYLNPSDPSVLKVISGHNKSITALTVS--PDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             cCcEEEEecccCCChhheecccccceeEEEEc--CCCCEEEeeccCceEEEEecCCcccc
Confidence            99999999999888999999999999999985  45579999999999999999887653

>KOG0313|consensus

Probab=99.96  E-value=2.3e-28  Score=188.19  Aligned_cols=219  Identities=18%  Similarity=0.284  Sum_probs=180.0

Q ss_pred             chhhhhcccCCCceEEEEEccCCCe---EEEEEecCeEEEEEcCCCCe----EEEEEecCcCeEEEEEcCCCCEEEEEeC
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPW---MLASLYNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~~dg~v~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      .+..+++.||+.+|.++++.-..+.   +++++.|.++++|-.+.+..    +....+|+..|-+++..+++..+++|+.
T Consensus       134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~  213 (423)
T KOG0313|consen  134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW  213 (423)
T ss_pred             CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence            3556778999999998888655444   99999999999999987754    3334578899999999999999999999


Q ss_pred             CCeEEEEECCC-------------------------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy4653          78 DMQVCVFNYNT-------------------------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW  132 (229)
Q Consensus        78 d~~i~iwd~~~-------------------------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~  132 (229)
                      |..|.||+.++                         ..++-.+.+|.+.|.++.|++ ...+.+++.|++|+.||++.+.
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            99999999321                         123456789999999999998 6678899999999999998875


Q ss_pred             eeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC---ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC
Q psy4653         133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS---PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR  209 (229)
Q Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~  209 (229)
                      .......  .....++..+| ...+|++|+.|..||+||.+++.   ..+++-+|..-|.++.|++. +..+|++||.|+
T Consensus       293 ~~~~~~~--~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-~~~~~~S~S~D~  368 (423)
T KOG0313|consen  293 LKSTLTT--NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-NEFQLVSGSYDN  368 (423)
T ss_pred             ceeeeec--CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-CceEEEEEecCC
Confidence            5444432  34578899998 67899999999999999998653   45778899999999999764 345899999999


Q ss_pred             eEEEEECCCCe-EEEeeccC
Q psy4653         210 LVKIWDYQNKT-CVQTLESG  228 (229)
Q Consensus       210 ~i~iwd~~~~~-~~~~~~~~  228 (229)
                      ++++||+|+.+ ++-++..|
T Consensus       369 t~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  369 TVKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             eEEEEEeccCCCcceeeccC
Confidence            99999999876 77777655

>KOG0283|consensus

Probab=99.96  E-value=3.4e-28  Score=203.14  Aligned_cols=210  Identities=13%  Similarity=0.214  Sum_probs=171.0

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iw   84 (229)
                      +..+.|.||++.|..++|+ ...+|++++.|++|+||++...++++.|. |.+.|+|+.|+| +++++++|+-|++++||
T Consensus       360 kP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             cchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence            4567799999999999999 66699999999999999999999998874 788999999999 67899999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--------ecceeeEEEEEEcCCCCC
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--------EGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~  156 (229)
                      ++...+.+.-... .+.|++++|.|+|++.+.|+.+|.+++|+....+......        ..|. .|+.+.+.|.+..
T Consensus       438 sI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~  515 (712)
T KOG0283|consen  438 SISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPD  515 (712)
T ss_pred             ecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCC
Confidence            9987666544443 4889999999999999999999999999997764322211        1122 7999999988777


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .++..+.|..|||+|.+....+..+++....-..+......++++|++|++|..|+||++...
T Consensus       516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            666678899999999988888888887644322222222447889999999999999998543

>KOG0310|consensus

Probab=99.96  E-value=1.4e-28  Score=194.49  Aligned_cols=203  Identities=24%  Similarity=0.371  Sum_probs=176.1

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      ..+.|.+++|+|..|+=++.+..-.|.|++..+....+++...++-+.+++|-.+|++|++|...|.|++||..+...++
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            44689999999999999998889999999999988888887788899999999999999999999999999987766788


Q ss_pred             EeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          94 SFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      .+++|+.+|..+.|+|++. .+++|+.|+.+++||+.+.. ....+.+|..+|.+.+++|.++.+++|||.||.||+||.
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            9999999999999999876 56788888999999998775 355678999999999999988889999999999999999


Q ss_pred             CCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         173 GSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       173 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      +.. ..+.++ .|..+|..+.+-++  +.++++++.. .|++||+.+|..
T Consensus       184 R~~~~~v~el-nhg~pVe~vl~lps--gs~iasAgGn-~vkVWDl~~G~q  229 (487)
T KOG0310|consen  184 RSLTSRVVEL-NHGCPVESVLALPS--GSLIASAGGN-SVKVWDLTTGGQ  229 (487)
T ss_pred             ccCCceeEEe-cCCCceeeEEEcCC--CCEEEEcCCC-eEEEEEecCCce
Confidence            987 444444 57788999888654  4478887774 799999986543

>KOG0283|consensus

Probab=99.96  E-value=1.5e-28  Score=205.15  Aligned_cols=215  Identities=15%  Similarity=0.334  Sum_probs=170.4

Q ss_pred             hhhhcc-cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC--------------------------------C------
Q psy4653           7 IKRKLT-ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET--------------------------------N------   47 (229)
Q Consensus         7 ~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~--------------------------------~------   47 (229)
                      ..+.+. +|...|+++.|+|||++||+|+.|+-|+||.+..                                .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344566 8999999999999999999999999999999765                                0      


Q ss_pred             ----------------------CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEE
Q psy4653          48 ----------------------QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCV  105 (229)
Q Consensus        48 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v  105 (229)
                                            +++..|.+|...|..+.|+ +.++|++++.|.++++|++...++++.|. |.++|+||
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV  415 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV  415 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence                                  0111223566678899999 45689999999999999999999999986 99999999


Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE--e
Q psy4653         106 AVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL--E  182 (229)
Q Consensus       106 ~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~  182 (229)
                      +|+| |++||++|+-|++||||++.+. ++..-.+.+ ..|+++.+.| +|...+.|+.+|.+++|+....+.....  .
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~-~Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDK-KVVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcC-eeEeehhhh-hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            9999 5679999999999999999765 222222333 6799999999 6999999999999999998766543322  1


Q ss_pred             cC------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         183 GH------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       183 ~h------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .|      ...|..+.|.+... .-++..+.|..|||+|.+..+.+.++.+
T Consensus       493 ~~~~Kk~~~~rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~lv~KfKG  542 (712)
T KOG0283|consen  493 LHNKKKKQGKRITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDLVHKFKG  542 (712)
T ss_pred             eccCccccCceeeeeEecCCCC-CeEEEecCCCceEEEeccchhhhhhhcc
Confidence            11      12588899876433 3577789999999999988777776653

>KOG0264|consensus

Probab=99.96  E-value=1.7e-28  Score=192.52  Aligned_cols=213  Identities=24%  Similarity=0.414  Sum_probs=177.7

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEE-EecCeEEEEEcCCCC----------eEEEEEecCcCeEEEEEcCCCC-E
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQ----------NVKSFEVCDLPVRAAKFVPRKN-W   71 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~-~   71 (229)
                      +++..+++. |...|+.+.+-|+.+.++|+ +..+.|.|||..+..          +...+.+|+.+-.+++|++... .
T Consensus       114 ~v~i~~~i~-h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~  192 (422)
T KOG0264|consen  114 KVEISQKIN-HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT  192 (422)
T ss_pred             ceEEEEecc-CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccccee
Confidence            345555555 89999999999999887775 567899999986532          1226677877788899998654 7


Q ss_pred             EEEEeCCCeEEEEECCCcc-------eEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCC-ceeeeeeeecce
Q psy4653          72 IVTGSDDMQVCVFNYNTLE-------RFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEK-AWACQQVFEGHT  142 (229)
Q Consensus        72 l~sg~~d~~i~iwd~~~~~-------~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~-~~~~~~~~~~~~  142 (229)
                      |++|+.|+.|++||++...       +...+.+|.+.|.-++|++... .|++.+.|+.+.|||++. ..++....++|.
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~  272 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS  272 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence            9999999999999986432       3456789999999999998665 678899999999999986 334567778999


Q ss_pred             eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       143 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ..+.++.|+|.++.+|||||.|+++.+||+|.- +++..+.+|...|.++.|++. ..++|+|++.|+.+.+||+..
T Consensus       273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh-~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH-NETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC-CCceeEecccCCcEEEEeccc
Confidence            999999999999999999999999999999864 578899999999999999765 446999999999999999964

>KOG0300|consensus

Probab=99.96  E-value=8.5e-29  Score=187.35  Aligned_cols=217  Identities=21%  Similarity=0.357  Sum_probs=188.2

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      ++.+.+.|.||.+.|+-++-....+++.+++.|.+-+||.+++++++..|.+|...|.++.|++++.++++++.|++..|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            45788899999999999999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             EECC------C--------c--------------------------ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcE
Q psy4653          84 FNYN------T--------L--------------------------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI  123 (229)
Q Consensus        84 wd~~------~--------~--------------------------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v  123 (229)
                      |...      .        +                          .++..+.+|...|.+..|-..++.+++++.|.+.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            9621      0        0                          1355678899999999999999999999999999


Q ss_pred             EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEEecCCCceEEEEEEeCCCcCEE
Q psy4653         124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGDKPYL  202 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l  202 (229)
                      .+||++.+ .+...+.||....+.+.-+| +..++++++.|.+.|+||++... .+..+++|.+.|.++.|... +  .+
T Consensus       297 nlwDVEtg-e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d--~v  371 (481)
T KOG0300|consen  297 NLWDVETG-EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-D--RV  371 (481)
T ss_pred             eeeeeccC-ceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-C--ce
Confidence            99999987 45667789999988888888 56899999999999999998654 35678999999999998643 3  48


Q ss_pred             EEeeCCCeEEEEECCCC-eEEEee
Q psy4653         203 ISGADDRLVKIWDYQNK-TCVQTL  225 (229)
Q Consensus       203 ~s~s~d~~i~iwd~~~~-~~~~~~  225 (229)
                      ++||+|.+|++||+++. .++.++
T Consensus       372 VSgSDDrTvKvWdLrNMRsplATI  395 (481)
T KOG0300|consen  372 VSGSDDRTVKVWDLRNMRSPLATI  395 (481)
T ss_pred             eecCCCceEEEeeeccccCcceee
Confidence            99999999999999875 344443

>KOG0643|consensus

Probab=99.96  E-value=2.8e-27  Score=174.98  Aligned_cols=207  Identities=18%  Similarity=0.312  Sum_probs=178.6

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC-----CeEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD-----MQVC   82 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----~~i~   82 (229)
                      .-+|.||+..|+|++.+-+.+.|++|+.|.++++||+++|+++..++. ..+|..+.|++.|++++..+.+     +.|.
T Consensus        45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~  123 (327)
T KOG0643|consen   45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVS  123 (327)
T ss_pred             eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence            346899999999999999999999999999999999999999998874 4589999999999988777654     4688


Q ss_pred             EEECC-------CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          83 VFNYN-------TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        83 iwd~~-------~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      ++|++       ..+++..+..+...++...|.|-+..+++|..||+|.+||.+++.......+.|...|+.+.+++ +.
T Consensus       124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~  202 (327)
T KOG0643|consen  124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DR  202 (327)
T ss_pred             EEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-Cc
Confidence            99987       34567888888899999999999999999999999999999988777777778999999999998 78


Q ss_pred             CEEEEEECCCcEEEEeCCCCC-------------------------------------------------------ceEE
Q psy4653         156 NTFASASLDRTVKVWQLGSAS-------------------------------------------------------PNFT  180 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~-------------------------------------------------------~~~~  180 (229)
                      .+|++++.|.+.++||+.+-+                                                       .+..
T Consensus       203 T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  203 TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence            999999999999999986521                                                       1124


Q ss_pred             EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       181 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +++|-+++++++|+|  ++.-.++|++||.||+.-+.+
T Consensus       283 vkGHFGPINsvAfhP--dGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  283 VKGHFGPINSVAFHP--DGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccccccCcceeEECC--CCcccccCCCCceEEEEEecc
Confidence            568999999999965  455689999999999976653

>KOG0289|consensus

Probab=99.96  E-value=1.1e-27  Score=187.28  Aligned_cols=210  Identities=20%  Similarity=0.318  Sum_probs=187.5

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ..+.++...|..+..++|+.|..+.++|..+.+.+..|++|...|..+.|+|+...+++++.|..|++|...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            57888999998889999999999999999999999999999999999999999999999999999999998776666677


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      ..|.+.|+.+..+|.+.||++++.|+.....|++.+..+..+... ..-.+++..|+| |+.+|.+|..|+.+++||+.+
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence            889999999999999999999999999999999887655444332 334478899999 799999999999999999999


Q ss_pred             CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       175 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +..+..+.+|+++|..++|  +.++-+|+++++|+.|++||+|+-+..++++..
T Consensus       379 ~~~~a~Fpght~~vk~i~F--sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~  430 (506)
T KOG0289|consen  379 QTNVAKFPGHTGPVKAISF--SENGYWLATAADDGSVKLWDLRKLKNFKTIQLD  430 (506)
T ss_pred             ccccccCCCCCCceeEEEe--ccCceEEEEEecCCeEEEEEehhhcccceeecc
Confidence            9888899999999999999  456668999999999999999998887777643

>KOG0640|consensus

Probab=99.96  E-value=3.7e-28  Score=183.23  Aligned_cols=208  Identities=24%  Similarity=0.404  Sum_probs=164.7

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      +-+++..|.++|+++.|||...+|++|+.|++|+++|.......+.++  ....+|.+++|+|.|.+|++|..-..+++|
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            346688899999999999999999999999999999998755444443  234689999999999999999999999999


Q ss_pred             ECCCcceEEE---eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-EEEEEEcCCCCCEEEE
Q psy4653          85 NYNTLERFHS---FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-VMQIVINPKDNNTFAS  160 (229)
Q Consensus        85 d~~~~~~~~~---~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s  160 (229)
                      |+++.++.-.   -.+|.+.|+++.+++.+++.++++.||.|++||--.+..+...-..|.+. |....|. .++++++|
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLs  322 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILS  322 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEee
Confidence            9999887543   35688999999999999999999999999999965553334444567554 6666666 48999999


Q ss_pred             EECCCcEEEEeCCCCCceEEEe-------------------------------------------------cCCCceEEE
Q psy4653         161 ASLDRTVKVWQLGSASPNFTLE-------------------------------------------------GHEKGVNCV  191 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~~-------------------------------------------------~h~~~v~~~  191 (229)
                      .+.|..+++|.+.++.++.+..                                                 +|...+..+
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            9999999999998765544322                                                 344444443


Q ss_pred             EEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         192 DYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       192 ~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      .  +++...-++|||.|-.+|+|--+
T Consensus       403 ~--HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  403 V--HSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             E--eCCCCCceeeecccceeeeeeec
Confidence            3  34455568899999999999654

>KOG0306|consensus

Probab=99.96  E-value=2.6e-27  Score=195.92  Aligned_cols=208  Identities=20%  Similarity=0.376  Sum_probs=182.1

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-----CCeEEEEE-------ecCcCeEEEEEcCCCCEEEEEe
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-----NQNVKSFE-------VCDLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-----~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~   76 (229)
                      -+..+|...++.++.+||+..+++|+.|.+|++||..-     +...+.+.       .-++.|.|+.++|++++|+++-
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence            34568999999999999999999999999999999642     21111111       1245799999999999999999


Q ss_pred             CCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC
Q psy4653          77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        77 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (229)
                      -|.++++|-+++.+-.-.+.+|.-+|.|++++|+++.++|||.|+.|++|-++-+ .|.+.+-+|...|+.+.|-| ...
T Consensus       528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V~F~P-~~~  605 (888)
T KOG0306|consen  528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSVQFLP-KTH  605 (888)
T ss_pred             ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCceeEEEEcc-cce
Confidence            9999999999999988889999999999999999999999999999999999766 56777778999999999999 568


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      .|.|+|.|+.++.||...=+.+..+.+|...|.|++..+  ++.+++|+|.|..|++|......
T Consensus       606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~--~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  606 LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP--NGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC--CCCeEEeccCCceeEeeeccCcc
Confidence            999999999999999988888999999999999999854  56699999999999999876543

>KOG0299|consensus

Probab=99.96  E-value=1.4e-27  Score=187.84  Aligned_cols=213  Identities=20%  Similarity=0.380  Sum_probs=179.8

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE-EE-----------------EecCcCeEEEEEcCCC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK-SF-----------------EVCDLPVRAAKFVPRK   69 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~-~~-----------------~~~~~~v~~~~~~~~~   69 (229)
                      .+.+..|..+|.|++++|++.+.++++.+++|.-|++.+++... ..                 +.|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            35577899999999999999999999999999999999987441 11                 1344579999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEE
Q psy4653          70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV  149 (229)
Q Consensus        70 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~  149 (229)
                      ++|++|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....+++++.|++|++|+++.. ....++.+|...|..+.
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGID  293 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeec
Confidence            99999999999999999999999999999999999999998899999999999999999866 34555678999999888


Q ss_pred             EcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         150 INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       150 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ... -+..+-.|+.|+++++|++.. .....+.+|...+.|++|...   .+++|||+||.|.+|++-+.+++.+..
T Consensus       294 aL~-reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~---~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  294 ALS-RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND---EHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             hhc-ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc---cceeeccCCceEEEeeecccCceeEee
Confidence            764 233444455999999999943 334567888889999999743   369999999999999999998887754

>KOG0299|consensus

Probab=99.96  E-value=1.7e-27  Score=187.34  Aligned_cols=202  Identities=19%  Similarity=0.327  Sum_probs=178.1

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      .+|...+.+++.+||+++|++|+.|..|+||+..+.+.++.+..|-..|.+++|-...+.|.+++.|+++++|+++....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            48999999999999999999999999999999999999999999999999999998888999999999999999998888


Q ss_pred             EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      +.++-+|++.|.++.-...++.+-+|+.|+++++|++..  ....+|.++.+.+-++++=  +...|+||+.||.|.+|+
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWS  354 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEee
Confidence            888899999999999988888888889999999999954  3456677888788888874  567999999999999999


Q ss_pred             CCCCCceEEEec-CC---C--------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         172 LGSASPNFTLEG-HE---K--------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       172 ~~~~~~~~~~~~-h~---~--------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +...+|+++.+. |.   .        .+++++..+.  ..++++||.+|.|++|.+..+
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEecCC
Confidence            998888887642 21   1        4677777654  448999999999999999876

>KOG0308|consensus

Probab=99.96  E-value=4.8e-28  Score=197.35  Aligned_cols=213  Identities=18%  Similarity=0.356  Sum_probs=177.7

Q ss_pred             CCCceE---EEEEcc-CCCeEEEEEecCeEEEEEcCCCC------eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653          14 RSDRVK---CCDLHP-TEPWMLASLYNGHVHVWNHETNQ------NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus        14 ~~~~v~---~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      |...|.   ++..++ .+++|++|+.||.|++|+.....      .+..++.|.+-|..+....+++.|+++|.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            334455   666655 45679999999999999986532      24566777777888888888999999999999999


Q ss_pred             EECCCc--ceEEEeccCCCceeEEEE-cCCCCEEEEEeCCCcEEEEecCCcee----------eeeeeecceeeEEEEEE
Q psy4653          84 FNYNTL--ERFHSFEAHSDYVRCVAV-HPTQPFLLTSSDDMLIKLWNWEKAWA----------CQQVFEGHTHYVMQIVI  150 (229)
Q Consensus        84 wd~~~~--~~~~~~~~h~~~i~~v~~-~~~~~~~~s~~~d~~v~lwd~~~~~~----------~~~~~~~~~~~v~~~~~  150 (229)
                      |+...+  -+...+..|.++|.|+++ -++...+++||-|+.|.+||+..+..          ......|+...|++++.
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            998765  456677889999999999 77888999999999999999975421          11122377888999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      ++ ++..+++|+..+-+++||.++.+.+..+++|...|.++-.  +++++.++|||+||+|++||+....|+.++..|+
T Consensus       180 N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~--~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  180 NQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV--NDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             CC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEE--cCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            87 6789999999999999999999999999999999999887  5577789999999999999999999999998774

>KOG0306|consensus

Probab=99.96  E-value=3.1e-27  Score=195.40  Aligned_cols=213  Identities=21%  Similarity=0.398  Sum_probs=185.9

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .+.||-..|.+++++.+...+++| ..+++++|+..+.++++++...  .+.+..|.|.++++++|...|.+.++|+...
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            467999999999999777655554 4789999999999999998754  8999999999999999999999999999988


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-------ee----------------------------
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-------AC----------------------------  134 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-------~~----------------------------  134 (229)
                      ..+...++|.+.|..++.+|++..+++||.|++|++||..-..       +.                            
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence            8888888999999999999999999999999999999953100       00                            


Q ss_pred             ------------------eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeC
Q psy4653         135 ------------------QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG  196 (229)
Q Consensus       135 ------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  196 (229)
                                        .-.+.||.-||.++.++| +..+++|||.|+.|++|-+.=+.+-+.+.+|...|.++.|.| 
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-  602 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-  602 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-
Confidence                              001248999999999998 689999999999999999988888888999999999999976 


Q ss_pred             CCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         197 GDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       197 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                       ....+.|++.|+.|+-||..+.++++++.+|
T Consensus       603 -~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H  633 (888)
T KOG0306|consen  603 -KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH  633 (888)
T ss_pred             -cceeEEEecCcceEEeechhhhhhheeeccc
Confidence             4457899999999999999999999999987

>KOG0267|consensus

Probab=99.96  E-value=7.6e-29  Score=204.10  Aligned_cols=215  Identities=22%  Similarity=0.421  Sum_probs=196.9

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      -.+++..|...|.|+..-..++.++.|+.|-.+-+|.......+..|..|+.+|.++.|+++..+|++|+.+|.|++||+
T Consensus        20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence            34678889999999999878899999999999999999998888889999999999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      +..+.++.+.+|...+..|.|+|-+.++++|+.|.-+++||.+.. .+...+.+|...+..+.++| +|.++++|+.|.+
T Consensus       100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNT  177 (825)
T ss_pred             hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecC-CCceeeccCCcce
Confidence            999999999999999999999999999999999999999999754 57888888999999999999 7899999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +++||+..++.+.++..|+..+..+.|.+  ..-++++||.|++|++||+++.+.+...
T Consensus       178 vki~d~~agk~~~ef~~~e~~v~sle~hp--~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHP--LEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             eeeecccccccccccccccccccccccCc--hhhhhccCCCCceeeeeccceeEEeecc
Confidence            99999999999999999999999999854  3447899999999999999988777644

>KOG0646|consensus

Probab=99.95  E-value=5e-27  Score=184.94  Aligned_cols=207  Identities=22%  Similarity=0.351  Sum_probs=176.3

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC-------
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN-------   87 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~-------   87 (229)
                      ..+|.|+.-+|.|.+|++|+..|.+++|.+.+|..+..+..|=.+|+|+.|+-+|.+|++|+.||.|.+|.+-       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            4579999999999999999999999999999999999988888899999999999999999999999999752       


Q ss_pred             --CcceEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          88 --TLERFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        88 --~~~~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                        +-++++.+..|.-+|+.+...+.  ..+++|+|.|.++++||+..+..+..+.  ....+.+++++|. +..+..|+.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpa-e~~~yiGt~  237 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPA-ERVVYIGTE  237 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEccc-ccEEEecCC
Confidence              23578889999999999888765  4589999999999999998775444432  2456889999994 678888999


Q ss_pred             CCcEEEEeCCCCC----------------ceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         164 DRTVKVWQLGSAS----------------PNFTLEGHEK--GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       164 d~~i~~wd~~~~~----------------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +|.|.+.++....                ....+.+|..  .|.|++++.  ++++|++|+.||+|.|||+.+.+|++++
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~--DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST--DGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec--CccEEEeeCCCCCEEEEecchHHHHHHH
Confidence            9999998874322                2345678877  899999954  6779999999999999999999999987


Q ss_pred             c
Q psy4653         226 E  226 (229)
Q Consensus       226 ~  226 (229)
                      .
T Consensus       316 ~  316 (476)
T KOG0646|consen  316 Q  316 (476)
T ss_pred             h
Confidence            6

>KOG0305|consensus

Probab=99.95  E-value=8.6e-27  Score=189.72  Aligned_cols=204  Identities=21%  Similarity=0.351  Sum_probs=177.7

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc-
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA-   97 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-   97 (229)
                      +-++|+..+  +++.+....|.+|+..+++.......+...|+++.|+++|++|++|..+|.+.|||.+..+.+..+.. 
T Consensus       181 nlldWss~n--~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  181 NLLDWSSAN--VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hHhhcccCC--eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            345677333  44555567999999999997777666677899999999999999999999999999999999999888 


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP  177 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  177 (229)
                      |..+|.+++|.  ...+.+|+.|+.|..+|++........+.+|...|..+.|++ ++.++|+|+.|+.+.+||.....+
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccc
Confidence            99999999999  578899999999999999877665556788999999999998 789999999999999999988899


Q ss_pred             eEEEecCCCceEEEEEEeCCCcCEEEEee--CCCeEEEEECCCCeEEEeeccC
Q psy4653         178 NFTLEGHEKGVNCVDYYHGGDKPYLISGA--DDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       178 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .+.+..|.+.|.+++|+|- ...+||+|+  .|+.|++||..+++.++.+..+
T Consensus       336 ~~~~~~H~aAVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg  387 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPW-QSGLLATGGGSADRCIKFWNTNTGARIDSVDTG  387 (484)
T ss_pred             cEEEeccceeeeEeeeCCC-ccCceEEcCCCcccEEEEEEcCCCcEecccccC
Confidence            9999999999999999864 345899855  6999999999999999887654

>KOG0305|consensus

Probab=99.95  E-value=8.6e-27  Score=189.72  Aligned_cols=210  Identities=16%  Similarity=0.280  Sum_probs=182.8

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      .+.|+++.|+|+|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|.  +..+.+|+.|+.|..+|++..+...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            68899999999999999999999999999999999888888 78889999998  6789999999999999998776554


Q ss_pred             E-eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE--CCCcEEEE
Q psy4653          94 S-FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS--LDRTVKVW  170 (229)
Q Consensus        94 ~-~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~w  170 (229)
                      . +.+|...|..++|++++.++++|+.|+.+.|||.... .....+..|...|..++|+|....+||+|+  .|+.|++|
T Consensus       295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            4 8889999999999999999999999999999998544 446667889999999999999999999975  89999999


Q ss_pred             eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE-eeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS-GADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      |..++..+..+... ..|-.+.|.+... .++.+ |..++.|.||++.+.+.+..+.+|.
T Consensus       374 n~~~g~~i~~vdtg-sQVcsL~Wsk~~k-Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~  431 (484)
T KOG0305|consen  374 NTNTGARIDSVDTG-SQVCSLIWSKKYK-ELLSTHGYSENQITLWKYPSMKLVAELLGHT  431 (484)
T ss_pred             EcCCCcEecccccC-CceeeEEEcCCCC-EEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence            99999887777653 4688899976433 35555 5568899999999988888888773

>KOG0269|consensus

Probab=99.95  E-value=1.6e-27  Score=197.58  Aligned_cols=208  Identities=22%  Similarity=0.368  Sum_probs=174.5

Q ss_pred             hhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q psy4653           9 RKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~   86 (229)
                      ..|..|++.|.+++||+..+ +|++|+.||.|++||++..+...++....+.|+.+.|+|. ++.++++...|.+++||+
T Consensus       127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDl  206 (839)
T KOG0269|consen  127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDL  206 (839)
T ss_pred             hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeec
Confidence            35889999999999999765 6677899999999999999998888888889999999994 789999999999999999


Q ss_pred             CCcc-eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE--C
Q psy4653          87 NTLE-RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS--L  163 (229)
Q Consensus        87 ~~~~-~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~  163 (229)
                      +.-+ +...+.+|.++|.|+.|||++.+|||||.|+.|+|||+...............++..+.|-|....+|++++  .
T Consensus       207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~  286 (839)
T KOG0269|consen  207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVV  286 (839)
T ss_pred             cCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccc
Confidence            7544 556788999999999999999999999999999999997543322222223567899999998778888886  6


Q ss_pred             CCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         164 DRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       164 d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      |-.|++||++.. .|..++..|...+..++|. +++...|.+++.|++|..-.++
T Consensus       287 dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~-~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  287 DTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD-SGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             cceEEEEeeccccccceeeeccCccccceecc-CCCceeeEeecCccHHHHhhhh
Confidence            789999999765 5778899999999999985 4555689999999998654444

>KOG0268|consensus

Probab=99.95  E-value=3.6e-28  Score=186.31  Aligned_cols=213  Identities=18%  Similarity=0.379  Sum_probs=160.8

Q ss_pred             hhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCeEEEEEecCcC--------------------------
Q psy4653           7 IKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSFEVCDLP--------------------------   59 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~--------------------------   59 (229)
                      +...|.||-+.|.|++=||.. ..+++|+.||.|++||+.+..++..++.|...                          
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence            344578999999999999987 78899999999999999876555554444433                          


Q ss_pred             ----------------------------------------------------eEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q psy4653          60 ----------------------------------------------------VRAAKFVPR-KNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        60 ----------------------------------------------------v~~~~~~~~-~~~l~sg~~d~~i~iwd~   86 (229)
                                                                          +.++.|+|- .+.|+++..|++|.++|.
T Consensus       138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~  217 (433)
T KOG0268|consen  138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL  217 (433)
T ss_pred             CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence                                                                344444543 234555556666666666


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      .+..+++.+-- .-.-+.++|+|+.-.|.+|+.|..++.+|++....+..++.+|.+.|+.+.|+| +|..|+|||.|++
T Consensus       218 R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDks  295 (433)
T KOG0268|consen  218 RQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKS  295 (433)
T ss_pred             ccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchhccccccce
Confidence            55555543321 123468999998888999999999999999988888899999999999999999 7999999999999


Q ss_pred             EEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         167 VKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      ||+|..+.+...-... .....|.|+.|+  .+.+++++||+|+.|++|..+..+-+.
T Consensus       296 IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S--~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  296 IRIFPVNHGHSRDIYHTKRMQHVFCVKYS--MDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEEeecCCCcchhhhhHhhhheeeEEEEe--ccccEEEecCCCcceeeeecchhhhcC
Confidence            9999987654322221 113458899984  577899999999999999987554433

>KOG0973|consensus

Probab=99.95  E-value=1.7e-26  Score=197.44  Aligned_cols=210  Identities=22%  Similarity=0.402  Sum_probs=178.3

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-------C-----------CeEEEEEecCcCeEEEEEcCCCC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-------N-----------QNVKSFEVCDLPVRAAKFVPRKN   70 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~   70 (229)
                      .++..|...|+|+.|+|||++||+|+.|+.|.+|....       +           +....+..|+..|..+.|+|++.
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~  142 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS  142 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence            34668999999999999999999999999999999872       1           24566778999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC--------------------
Q psy4653          71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK--------------------  130 (229)
Q Consensus        71 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~--------------------  130 (229)
                      +|++++.|++|.|||..+.+.+..+++|+..|..+.|.|-|++|++-+.|++|++|++.+                    
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f  222 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF  222 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence            999999999999999999999999999999999999999999999999999999999533                    


Q ss_pred             -------------------------------ceeeeeeeecceeeEEEEEEcCC------------CCC----EEEEEEC
Q psy4653         131 -------------------------------AWACQQVFEGHTHYVMQIVINPK------------DNN----TFASASL  163 (229)
Q Consensus       131 -------------------------------~~~~~~~~~~~~~~v~~~~~~~~------------~~~----~l~s~~~  163 (229)
                                                     .++....+.||..++..+.|+|.            .++    .+|+|+.
T Consensus       223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence                                           11122335689999999999872            121    6889999


Q ss_pred             CCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         164 DRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      |++|.+|.....+|++.+.. -...|..++|+  +++-.|+.+|.||+|.+..++..+
T Consensus       303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs--pdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS--PDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CccEEEEecCCCCchhhhhhhhcCceeeeeEc--CCCCeEEEEecCCeEEEEEcchHH
Confidence            99999999988888877654 24578888885  466679999999999999987643

>KOG0300|consensus

Probab=99.95  E-value=2.9e-27  Score=179.12  Aligned_cols=210  Identities=26%  Similarity=0.423  Sum_probs=176.1

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEc------CC--------C--------------------------C
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNH------ET--------N--------------------------Q   48 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~------~~--------~--------------------------~   48 (229)
                      -+|.||...|+|++|||++..+++++.|++-+||..      .+        +                          .
T Consensus       184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv  263 (481)
T KOG0300|consen  184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV  263 (481)
T ss_pred             eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence            469999999999999999999999999999999982      11        0                          0


Q ss_pred             eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEec
Q psy4653          49 NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW  128 (229)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~  128 (229)
                      ++..+..|...|.+..|...|+.++++++|....+||+++++.+..+.+|....+.++-||..+++++++.|.+.++||.
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF  343 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF  343 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence            23345567778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC---------------------Cce---------
Q psy4653         129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA---------------------SPN---------  178 (229)
Q Consensus       129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------------------~~~---------  178 (229)
                      +..-+...+|.||...|+.+.|+.  +..+++|+.|.+|++||+++-                     .++         
T Consensus       344 ReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRq  421 (481)
T KOG0300|consen  344 REAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQ  421 (481)
T ss_pred             hhhcceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCce
Confidence            877667788999999999999985  568999999999999998641                     000         


Q ss_pred             ----------------EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         179 ----------------FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       179 ----------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                                      ..-++|...|.|.+|.....-.-|++++.|+.+.=|++...+
T Consensus       422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             EEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence                            122467777888888643322348899999999999987653

>KOG0278|consensus

Probab=99.95  E-value=5.6e-28  Score=177.33  Aligned_cols=209  Identities=21%  Similarity=0.335  Sum_probs=175.1

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .-+|.||+..|++..++.+....++++.|=+-++||.-+|..+..|. |+.-|.+++|+.+.++|++|+.+.-++|||++
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln  130 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN  130 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence            34688999999999999888878888999999999999999988874 67789999999999999999999999999998


Q ss_pred             Ccc-eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-------------------------
Q psy4653          88 TLE-RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-------------------------  141 (229)
Q Consensus        88 ~~~-~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-------------------------  141 (229)
                      .-+ +...+.+|.+.|..+-|...++.+++++.|++||+||.+.+.....++-.+                         
T Consensus       131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fw  210 (334)
T KOG0278|consen  131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFW  210 (334)
T ss_pred             CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEe
Confidence            654 567888999999999999999999999999999999987764433322110                         


Q ss_pred             -------------eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE-ecCCCceEEEEEEeCCCcCEEEEeeC
Q psy4653         142 -------------THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVNCVDYYHGGDKPYLISGAD  207 (229)
Q Consensus       142 -------------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~  207 (229)
                                   ...|....++|. ...+++|+.|..++.||+.++..+... ++|..+|.|+.|.|  ++...++||.
T Consensus       211 daksf~~lKs~k~P~nV~SASL~P~-k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP--dGE~yAsGSE  287 (334)
T KOG0278|consen  211 DAKSFGLLKSYKMPCNVESASLHPK-KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP--DGELYASGSE  287 (334)
T ss_pred             ccccccceeeccCccccccccccCC-CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC--CCceeeccCC
Confidence                         112334455664 478899999999999999999888775 89999999999954  5668899999


Q ss_pred             CCeEEEEECCCCe
Q psy4653         208 DRLVKIWDYQNKT  220 (229)
Q Consensus       208 d~~i~iwd~~~~~  220 (229)
                      ||+|+||.+..++
T Consensus       288 DGTirlWQt~~~~  300 (334)
T KOG0278|consen  288 DGTIRLWQTTPGK  300 (334)
T ss_pred             CceEEEEEecCCC
Confidence            9999999987654

>KOG0289|consensus

Probab=99.95  E-value=8.9e-26  Score=176.69  Aligned_cols=207  Identities=20%  Similarity=0.279  Sum_probs=178.1

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ++...|.||+..|..+.|||+...+++++.|..|++|.............|+.+|+.+..+|.|.||++++.|+.....|
T Consensus       252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd  331 (506)
T KOG0289|consen  252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD  331 (506)
T ss_pred             hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence            55677999999999999999999999999999999999988777777788999999999999999999999999999999


Q ss_pred             CCCcceEEEecc--CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          86 YNTLERFHSFEA--HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        86 ~~~~~~~~~~~~--h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      ++++..+.....  ..-.+++.+|||||.+|.+|..|+.|++||+..+. ....|.+|.++|..+.|+. +|-+|++++.
T Consensus       332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsE-NGY~Lat~ad  409 (506)
T KOG0289|consen  332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSE-NGYWLATAAD  409 (506)
T ss_pred             ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEecc-CceEEEEEec
Confidence            999887655432  22358999999999999999999999999998764 5667899999999999985 7889999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      |+.|++||++..+...++.... .++.++.|.  ..+.+|+.++.|=+|++++-
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD--~SGt~L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD--QSGTYLGIAGSDLQVYICKK  461 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEc--CCCCeEEeecceeEEEEEec
Confidence            9999999999887766665432 368888884  45668999988877777763

>KOG0772|consensus

Probab=99.95  E-value=1.6e-26  Score=184.37  Aligned_cols=214  Identities=20%  Similarity=0.345  Sum_probs=170.3

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe-EEEEE----ecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN-VKSFE----VCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ++++|+..|.++++.|.|-.|++|+.|-.|++||...... .+.|+    .....+.++.|++.++.|++.+...+++++
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL  241 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence            4788999999999999999999999999999999986543 22232    234679999999999999999889999999


Q ss_pred             ECCCcceE------------EEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeee-----cceeeEE
Q psy4653          85 NYNTLERF------------HSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFE-----GHTHYVM  146 (229)
Q Consensus        85 d~~~~~~~------------~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~-----~~~~~v~  146 (229)
                      |-...+..            ...++|...++|.+|+|..+ .|+|++.|+++|+||+.+.+.-.+++.     +..-+++
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t  321 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT  321 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence            86543322            23468999999999999765 689999999999999987655555553     2334577


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEeCCCC--Cce-EEEecCCC--ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC-e
Q psy4653         147 QIVINPKDNNTFASASLDRTVKVWQLGSA--SPN-FTLEGHEK--GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK-T  220 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~-~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~  220 (229)
                      ...|++ ++.+||+|+.||.|.+|+.+..  .+. +.-+.|..  .+.|+.|+.  ++++|+|-+.|+++++||+++. +
T Consensus       322 sC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~--dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  322 SCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY--DGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             eeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc--ccchhhhccCCCceeeeecccccc
Confidence            888998 7899999999999999997543  233 33456876  799999954  6679999999999999999875 4


Q ss_pred             EEEeec
Q psy4653         221 CVQTLE  226 (229)
Q Consensus       221 ~~~~~~  226 (229)
                      ++.+.+
T Consensus       399 pL~~~t  404 (641)
T KOG0772|consen  399 PLNVRT  404 (641)
T ss_pred             chhhhc
Confidence            665544

>KOG0275|consensus

Probab=99.95  E-value=7e-27  Score=177.50  Aligned_cols=219  Identities=18%  Similarity=0.316  Sum_probs=183.4

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      -.+--+.++|.|++|+-|...|++|+.||.|++|.+++|++++.|. .|...|+|+.|+.++..+++++.|..+++.-+.
T Consensus       257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence            3355578899999999999999999999999999999999999987 788899999999999999999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      .++.++.+.+|...|+...|.++|..+++++.||+|++|+.+.. .+..+|.  +...+|..+..-|.++..++.+...+
T Consensus       337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence            99999999999999999999999999999999999999998765 3444443  33556888888898889999999999


Q ss_pred             cEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccCC
Q psy4653         166 TVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      ++.+-++.. ..++.+. +..++-.-+...-++.+..+.+.+.|+.++.|.+.+|+..+++..|+
T Consensus       416 tv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE  479 (508)
T KOG0275|consen  416 TVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE  479 (508)
T ss_pred             eEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence            999998854 3344442 22222111222224566789999999999999999999999987664

>KOG0647|consensus

Probab=99.95  E-value=9e-26  Score=169.52  Aligned_cols=208  Identities=21%  Similarity=0.332  Sum_probs=160.4

Q ss_pred             CCceEEEEEccC-CCeEEEEEecCeEEEEEcCC-CCeE-EEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          15 SDRVKCCDLHPT-EPWMLASLYNGHVHVWNHET-NQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        15 ~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      .+.|.+++|||+ ...+++|++||+|++|+++. |..+ +....++.++.+++|+.+|..+++|+.|+++++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            578999999995 45555899999999999987 3433 33445778999999999999999999999999999999854


Q ss_pred             EEEeccCCCceeEEEEcCCCC--EEEEEeCCCcEEEEecCCceeeeee------e-------------------------
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNWEKAWACQQV------F-------------------------  138 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~--~~~s~~~d~~v~lwd~~~~~~~~~~------~-------------------------  138 (229)
                       ..+..|.+.|.++.|-+...  .|+|||.|++|+.||++...++..+      +                         
T Consensus       107 -~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n  185 (347)
T KOG0647|consen  107 -SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN  185 (347)
T ss_pred             -eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence             66778999999999987655  7899999999999998764332211      0                         


Q ss_pred             -----ecc----eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC--CceEEEecCCC---------ceEEEEEEeCCC
Q psy4653         139 -----EGH----THYVMQIVINPKDNNTFASASLDRTVKVWQLGSA--SPNFTLEGHEK---------GVNCVDYYHGGD  198 (229)
Q Consensus       139 -----~~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~---------~v~~~~~~~~~~  198 (229)
                           ..+    .-.+.++++.+ +...++-|+-+|++-+..+..+  +.-+.+++|..         .|+.|+|.+  .
T Consensus       186 ~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP--~  262 (347)
T KOG0647|consen  186 PPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP--V  262 (347)
T ss_pred             CcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec--c
Confidence                 001    12344566554 4455677899999999888765  55678888863         367789865  4


Q ss_pred             cCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         199 KPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ...|+|++.||+..+||-....-+++.+
T Consensus       263 hgtlvTaGsDGtf~FWDkdar~kLk~s~  290 (347)
T KOG0647|consen  263 HGTLVTAGSDGTFSFWDKDARTKLKTSE  290 (347)
T ss_pred             cceEEEecCCceEEEecchhhhhhhccC
Confidence            5589999999999999988776666644

>KOG0278|consensus

Probab=99.95  E-value=2.2e-27  Score=174.24  Aligned_cols=213  Identities=20%  Similarity=0.314  Sum_probs=187.4

Q ss_pred             hhcccCCCceEEEEEcc---CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           9 RKLTARSDRVKCCDLHP---TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p---~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ..-.||+++|..++|+|   +|=+|++++.||.-.+-+-++|.-+.+|..|+..|.+...+.+....++++.|-+-++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            34579999999999996   566899999999999999999999999999999999999998888899999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      .-++..++.|+ |...|.+++|+.+..++++|+.++-+|+||+++.......+.+|.+.|..+.|.. ....|+|+..|+
T Consensus        88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~  165 (334)
T KOG0278|consen   88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCC
Confidence            99999999986 8899999999999999999999999999999988777788899999999999986 456788889999


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +||+||.++++.+.+++- ...|.++-+++.++   ++|-..-+.|++||.++...++.++.
T Consensus       166 tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             ceEEEEeccCcEEEEEec-CCCCcceeeccCCC---EEEEecCceeEEeccccccceeeccC
Confidence            999999999999888865 34678888865443   56667778899999999888876653

>KOG0308|consensus

Probab=99.94  E-value=3.1e-26  Score=186.88  Aligned_cols=208  Identities=20%  Similarity=0.290  Sum_probs=182.3

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEEEecCcCeEEEEE-cCCCCEEEEEeCCCeEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKF-VPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~sg~~d~~i~iw   84 (229)
                      ..++..|++=|+.+..-..++.|++++.|-+|++|+...+  -+...+..|.+.|.|+++ .++..++|+|+-|+.|.+|
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence            4557789999999988889999999999999999999987  567778889999999999 6667789999999999999


Q ss_pred             ECCCcc--eEE--------Eec-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC
Q psy4653          85 NYNTLE--RFH--------SFE-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK  153 (229)
Q Consensus        85 d~~~~~--~~~--------~~~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~  153 (229)
                      |++++.  .+.        .+. ++..+|.+++..+.+..+++|+..+-+++||.+...+..++ .||...|..+..++ 
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL-rGHTdNVr~ll~~d-  223 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL-RGHTDNVRVLLVND-  223 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeee-eccccceEEEEEcC-
Confidence            999762  222        233 67889999999999999999999999999999887666665 49999999999986 


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ++..++|+|.|++|++||++..++++++..|.+.|.++...  +.-.++.+|+.||.|..=|+++.
T Consensus       224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~--~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS--PSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC--CCcceEEecCCCCcEEecccCCc
Confidence            79999999999999999999999999999999999988874  45568999999999999998874

>KOG1407|consensus

Probab=99.94  E-value=7.8e-25  Score=161.59  Aligned_cols=218  Identities=15%  Similarity=0.250  Sum_probs=181.7

Q ss_pred             cchhhhhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      |+.+...+.||++.|.-++|+|..+ .+++++.|++|++||.+++++........ +..-+.|+|+|++++.|+.|..|.
T Consensus        53 r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~kdD~it  131 (313)
T KOG1407|consen   53 RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-ENINITWSPDGEYIAVGNKDDRIT  131 (313)
T ss_pred             hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-cceEEEEcCCCCEEEEecCcccEE
Confidence            3445556889999999999999765 55556789999999999999988766544 455688999999999999999999


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ..|.++.+.....+ ..-.++-+.|+.+..+|+.-..-|.|.|-..... ++.+.+..|.....++.|+| +|.+||+|+
T Consensus       132 ~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p-~GryfA~Gs  208 (313)
T KOG1407|consen  132 FIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDP-DGRYFATGS  208 (313)
T ss_pred             EEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECC-CCceEeecc
Confidence            99998887766554 3456788899988887776666789988876644 34566788999999999999 799999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .|-.+.+||+..-.+.+.+..+.-+|..+.|++  ++++||+||+|..|-|=++++|..+-.++.
T Consensus       209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~--dg~~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  209 ADALVSLWDVDELICERCISRLDWPVRTLSFSH--DGRMLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             ccceeeccChhHhhhheeeccccCceEEEEecc--CcceeeccCccceEEeEecccCCeEEEeec
Confidence            999999999998888888888888999999976  566999999999999999999987776654

>KOG0288|consensus

Probab=99.94  E-value=8.5e-27  Score=181.29  Aligned_cols=213  Identities=19%  Similarity=0.311  Sum_probs=165.4

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ...+..|..+|..+.|-++...|++|+.|..|++|+....+  .+.++.+...++..+.|.++++.+++++.|+.+++|+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            44577899999999999999999999999999999998776  5666667778899999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      ++......++.+|++.|+++.|......+++|+.|.+|++||+.+......++.+  ..+..+..+   ...++||-.|+
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~---~~~~~SgH~Dk  322 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS---ISDVISGHFDK  322 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec---ceeeeeccccc
Confidence            9999888999999999999999988777999999999999999875433344432  223344433   23556666666


Q ss_pred             cEEEEeCCCCCceEEEecCC---------------------------------------------CceEEEEEEeCCCcC
Q psy4653         166 TVKVWQLGSASPNFTLEGHE---------------------------------------------KGVNCVDYYHGGDKP  200 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~---------------------------------------------~~v~~~~~~~~~~~~  200 (229)
                      +||+||.++..++.+.+.+.                                             ...+.+.|  ++++.
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf--Spd~~  400 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF--SPDGS  400 (459)
T ss_pred             ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE--CCCCc
Confidence            66666655543333222111                                             11333444  45667


Q ss_pred             EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         201 YLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      |+++||.||.|+||++.++++.+.+..
T Consensus       401 YvaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  401 YVAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             eeeeccCCCcEEEEEccCceEEEEecc
Confidence            999999999999999999999888754

>KOG0267|consensus

Probab=99.94  E-value=1.7e-27  Score=196.26  Aligned_cols=195  Identities=20%  Similarity=0.390  Sum_probs=173.7

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .|.+|+.+|.|+.|+++...+++|+.+|+|++||++.++.++++..|..++.++.|+|-+.+.++|+.|+.+++||+...
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      .+.+.+++|...+.++.|+|+|+++++++.|.++++||+..+ ++...|..|.+.+..+.++| .+-++++|+.|+++++
T Consensus       145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRF  222 (825)
T ss_pred             CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCc-hhhhhccCCCCceeee
Confidence            899999999999999999999999999999999999999765 66778899999999999998 5689999999999999


Q ss_pred             EeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC
Q psy4653         170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD  208 (229)
Q Consensus       170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d  208 (229)
                      ||+++-..+-.......+|.+..|.  +++..+++|-.+
T Consensus       223 ~dletfe~I~s~~~~~~~v~~~~fn--~~~~~~~~G~q~  259 (825)
T KOG0267|consen  223 WDLETFEVISSGKPETDGVRSLAFN--PDGKIVLSGEQI  259 (825)
T ss_pred             eccceeEEeeccCCccCCceeeeec--CCceeeecCchh
Confidence            9998665555555556789999984  455556665544

>KOG0302|consensus

Probab=99.94  E-value=1.8e-25  Score=172.35  Aligned_cols=207  Identities=18%  Similarity=0.277  Sum_probs=164.4

Q ss_pred             cccCCCceEEEEEccCCCeEEEE--EecCeEEEEEcCC----------------CCeEEEEEecCcCeEEEEEcCCC-CE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLAS--LYNGHVHVWNHET----------------NQNVKSFEVCDLPVRAAKFVPRK-NW   71 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~--~~dg~v~~wd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~   71 (229)
                      .-+|...++.+.-++.++-.+++  +..|.|+|||+..                .+++.++..|...-..++|+|-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34577777777777765444443  5689999999752                23466677788888999999943 34


Q ss_pred             EEEEeCCCeEEEEECCCcce---EEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceee-eeeeecceeeEE
Q psy4653          72 IVTGSDDMQVCVFNYNTLER---FHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWAC-QQVFEGHTHYVM  146 (229)
Q Consensus        72 l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~-~~~~~~~~~~v~  146 (229)
                      |++|.--+.|.+|...++..   -..+.+|+++|..++|||... .|+++|.|++|+|||++...+. .-....|.+-|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            78888888999999877653   245678999999999999766 7889999999999999877432 223377888999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEeCCC---CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         147 QIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .+.|+.. ..+||+|+.||++++||+++   +.++..++.|..+|.++.|.+..+ ..|++++.|.+|.|||+...
T Consensus       307 VISWnr~-~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  307 VISWNRR-EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eEEccCC-cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeecc
Confidence            9999974 45999999999999999875   568889999999999999987655 47888999999999998654

>KOG0269|consensus

Probab=99.94  E-value=1.3e-26  Score=192.24  Aligned_cols=198  Identities=19%  Similarity=0.342  Sum_probs=166.6

Q ss_pred             eEEEEEcc-CCCeEEEEEecCeEEEEEcCC---CCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCcceE
Q psy4653          18 VKCCDLHP-TEPWMLASLYNGHVHVWNHET---NQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        18 v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ...+.|+. +.+++|+++..|.|.+||+..   .+++..|..|+..+.+++|++. .++|++|+.||.|++||++..+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            34456664 356778888999999999987   5667788889999999999984 689999999999999999988888


Q ss_pred             EEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          93 HSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      ..+.+..+.|+.|+|+|. +..|+++...|.+++||+++..++...+..|.++|.++.|+| ++.+|||||.|+.|++||
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD  248 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence            888888899999999985 457889999999999999998888888999999999999999 789999999999999999


Q ss_pred             CCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeC--CCeEEEEECCC
Q psy4653         172 LGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGAD--DRLVKIWDYQN  218 (229)
Q Consensus       172 ~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--d~~i~iwd~~~  218 (229)
                      +...+.  ..++.. ..++.++.|.|. ...+|++++.  |-.|+|||++-
T Consensus       249 ~t~~~~~~~~tInT-iapv~rVkWRP~-~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  249 MTDSRAKPKHTINT-IAPVGRVKWRPA-RSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             ccCCCccceeEEee-cceeeeeeeccC-ccchhhhhhccccceEEEEeecc
Confidence            986543  333332 457899999654 3457888874  88899999963

>KOG0316|consensus

Probab=99.94  E-value=1.9e-25  Score=162.80  Aligned_cols=168  Identities=21%  Similarity=0.361  Sum_probs=148.1

Q ss_pred             EEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy4653          50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE  129 (229)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~  129 (229)
                      ...+..++.+|..+.|+.+||+.++++.|.+|++|++-.+..++++.+|..+|..++.+.+...|++++.|+.+.+||+.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC--CceEEEecCCCceEEEEEEeCCCcCEEEEeeC
Q psy4653         130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA--SPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD  207 (229)
Q Consensus       130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~  207 (229)
                      .+ +..+.|.+|...|..+.|+. +...++||+.|.++++||.++.  +|++.+.....+|.+++..    ...+++||.
T Consensus        90 TG-kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~----~heIvaGS~  163 (307)
T KOG0316|consen   90 TG-KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA----EHEIVAGSV  163 (307)
T ss_pred             cC-eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec----ccEEEeecc
Confidence            87 55777899999999999996 5689999999999999999754  6788787777788888872    335888999


Q ss_pred             CCeEEEEECCCCeEEE
Q psy4653         208 DRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       208 d~~i~iwd~~~~~~~~  223 (229)
                      ||++|.||++.|..-.
T Consensus       164 DGtvRtydiR~G~l~s  179 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSS  179 (307)
T ss_pred             CCcEEEEEeecceeeh
Confidence            9999999998876533

>KOG0641|consensus

Probab=99.94  E-value=2.6e-24  Score=156.29  Aligned_cols=203  Identities=15%  Similarity=0.313  Sum_probs=165.3

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEE--cCCCCeE---EEEEecCcCeEEEEEcCC----CCEEEEEeC-CCe
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN--HETNQNV---KSFEVCDLPVRAAKFVPR----KNWIVTGSD-DMQ   80 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd--~~~~~~~---~~~~~~~~~v~~~~~~~~----~~~l~sg~~-d~~   80 (229)
                      -+.|...|+|.+|+|+|..+++|+.|+.|++.-  .++.+..   ..|.-|+..|+.++|..+    +.+|++++. |.+
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            556888999999999999999999999999854  4444332   345667888999999753    456777654 567


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee---eec---ceeeEEEEEEcCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV---FEG---HTHYVMQIVINPKD  154 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~---~~~---~~~~v~~~~~~~~~  154 (229)
                      |.+-|-.+++..+.+.+|++-|.++ ++=++.++++|++|.+|+.||++-+.....+   +.+   ....|..+++.| .
T Consensus       165 iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-s  242 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-S  242 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-C
Confidence            8888889999999999999998886 3345689999999999999999765332221   221   136789999998 6


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      +.+|++|-.|....+||++.+.++..+..|+..|.|+.|++  ...|++++|.|.+|++=|++
T Consensus       243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp--~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP--GAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC--CceEEEEecccceEEEeecc
Confidence            89999999999999999999999999999999999999965  44589999999999999876

>KOG0301|consensus

Probab=99.94  E-value=2.3e-25  Score=182.97  Aligned_cols=204  Identities=21%  Similarity=0.323  Sum_probs=176.3

Q ss_pred             cccCCCceEE-EEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKC-CDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~-~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      +.+|..-|.+ ++|-+ ++-.+++|+.|..+.+|...+..+...+.+|+..|.++....++. +++||+|.++++|... 
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-  130 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-  130 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch-
Confidence            5566666666 77776 344589999999999999999999999999999999999887777 8999999999999765 


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                       +....+++|+..|.+++.-|++ .++|||.|++|++|.-   ....++|.+|...|..+++-+  ...|+|++.||.|+
T Consensus       131 -~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir  203 (745)
T KOG0301|consen  131 -ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIR  203 (745)
T ss_pred             -hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEec--CCCeEeecCCceEE
Confidence             4555689999999999999988 8899999999999974   466889999999999999875  46899999999999


Q ss_pred             EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +|++ ++..+.++.+|+.-+.+++..+  +..+++|+++|++++||+..  +|++.++.+
T Consensus       204 ~w~~-~ge~l~~~~ghtn~vYsis~~~--~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP  258 (745)
T KOG0301|consen  204 LWDL-DGEVLLEMHGHTNFVYSISMAL--SDGLIVSTGEDRTLRIWKKD--ECVQVITLP  258 (745)
T ss_pred             EEec-cCceeeeeeccceEEEEEEecC--CCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence            9999 7888999999999999999643  34589999999999999988  777776643

>KOG0973|consensus

Probab=99.94  E-value=7.8e-25  Score=187.43  Aligned_cols=214  Identities=22%  Similarity=0.377  Sum_probs=174.4

Q ss_pred             hhhcccCCC-ceEEEEEccCCCeEEEEE--ecCeEEEEEcCCC------------CeEEEEEecCcCeEEEEEcCCCCEE
Q psy4653           8 KRKLTARSD-RVKCCDLHPTEPWMLASL--YNGHVHVWNHETN------------QNVKSFEVCDLPVRAAKFVPRKNWI   72 (229)
Q Consensus         8 ~~~~~~~~~-~v~~~~~~p~~~~l~~~~--~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l   72 (229)
                      +..+-+|.. +|.+++.||++..+++|+  .|+.+++|+...-            +.+.....|...|.|+.|+|+|++|
T Consensus         5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l   84 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL   84 (942)
T ss_pred             cccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence            334445544 679999999999999999  8999999997631            2234455677899999999999999


Q ss_pred             EEEeCCCeEEEEECCC------------------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy4653          73 VTGSDDMQVCVFNYNT------------------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC  134 (229)
Q Consensus        73 ~sg~~d~~i~iwd~~~------------------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~  134 (229)
                      |+|++|+.|.||+...                  .+.+..+.+|...|..++|+|++.++++++.|++|.+||.... ..
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~  163 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-EL  163 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-ee
Confidence            9999999999998762                  1246678899999999999999999999999999999999877 77


Q ss_pred             eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC---------------------------------------
Q psy4653         135 QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA---------------------------------------  175 (229)
Q Consensus       135 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------------------------------------  175 (229)
                      ..++.+|.+.|..+.|.| -|.+|||-+.|++|++|....-                                       
T Consensus       164 ~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             eeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            888999999999999999 5899999999999999985320                                       


Q ss_pred             -------------CceEEEecCCCceEEEEEEeC---CC--------cC----EEEEeeCCCeEEEEECCCCeEEE
Q psy4653         176 -------------SPNFTLEGHEKGVNCVDYYHG---GD--------KP----YLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       176 -------------~~~~~~~~h~~~v~~~~~~~~---~~--------~~----~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                                   +.-..+-||.+++.++.|.|.   .+        .+    ++|+||.|++|-||.....+++.
T Consensus       243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence                         000145589999999999642   11        11    68899999999999987665543

>KOG1332|consensus

Probab=99.93  E-value=7.3e-25  Score=160.37  Aligned_cols=210  Identities=24%  Similarity=0.376  Sum_probs=166.8

Q ss_pred             hhhhcccCCCceEEEEEc-c-CCCeEEEEEecCeEEEEEcCCCCeEE--EEEecCcCeEEEEEcCC--CCEEEEEeCCCe
Q psy4653           7 IKRKLTARSDRVKCCDLH-P-TEPWMLASLYNGHVHVWNHETNQNVK--SFEVCDLPVRAAKFVPR--KNWIVTGSDDMQ   80 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~-p-~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~   80 (229)
                      +.-.|.||..||.-++|- | .|.+|+++++||.|.||.-+.++-.+  .+..|+..|++++|.|.  |-.|++++.||.
T Consensus        48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~  127 (299)
T KOG1332|consen   48 LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK  127 (299)
T ss_pred             eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCc
Confidence            344689999999999984 4 68999999999999999999986543  34567889999999997  457999999999


Q ss_pred             EEEEECCCc-c--eEEEeccCCCceeEEEEcCC---C-----------CEEEEEeCCCcEEEEecCCc-eeeeeeeecce
Q psy4653          81 VCVFNYNTL-E--RFHSFEAHSDYVRCVAVHPT---Q-----------PFLLTSSDDMLIKLWNWEKA-WACQQVFEGHT  142 (229)
Q Consensus        81 i~iwd~~~~-~--~~~~~~~h~~~i~~v~~~~~---~-----------~~~~s~~~d~~v~lwd~~~~-~~~~~~~~~~~  142 (229)
                      |.+.+++.. .  ..+...+|.-.|++++|.|.   |           +.|++|+.|+.|+||+..+. +...+.+++|.
T Consensus       128 vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~  207 (299)
T KOG1332|consen  128 VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK  207 (299)
T ss_pred             EEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc
Confidence            999987653 2  23445789999999999986   3           45999999999999998663 44566789999


Q ss_pred             eeEEEEEEcCCCC---CEEEEEECCCcEEEEeCCCCCceE---EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         143 HYVMQIVINPKDN---NTFASASLDRTVKVWQLGSASPNF---TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       143 ~~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      +.|..++|.|..+   .+|+|++.||++.+|..+.....+   .++.-...+..+.|+.  .+++|+.++.|+.|.+|.-
T Consensus       208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~--sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL--SGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec--cccEEEEecCCcEEEEEEe
Confidence            9999999998543   479999999999999876432221   1223345677888865  4558999999999999986


Q ss_pred             CC
Q psy4653         217 QN  218 (229)
Q Consensus       217 ~~  218 (229)
                      ..
T Consensus       286 ~~  287 (299)
T KOG1332|consen  286 NV  287 (299)
T ss_pred             CC
Confidence            53

>KOG1332|consensus

Probab=99.93  E-value=2.1e-25  Score=163.26  Aligned_cols=209  Identities=21%  Similarity=0.279  Sum_probs=174.8

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC---CeEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN---QNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iw   84 (229)
                      --.+|.+-|-.+...--|..|++++.|++|+|+..+..   +++..+.+|..||..+.|..  -|.+||+++-||+|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34578889988888889999999999999999999865   45677889999999999987  58999999999999999


Q ss_pred             ECCCcc--eEEEeccCCCceeEEEEcCCC--CEEEEEeCCCcEEEEecCCc--eeeeeeeecceeeEEEEEEcCCC--C-
Q psy4653          85 NYNTLE--RFHSFEAHSDYVRCVAVHPTQ--PFLLTSSDDMLIKLWNWEKA--WACQQVFEGHTHYVMQIVINPKD--N-  155 (229)
Q Consensus        85 d~~~~~--~~~~~~~h~~~i~~v~~~~~~--~~~~s~~~d~~v~lwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~-  155 (229)
                      ..+++.  .......|..+|++++|.|.+  ..|++++.||.|.|.+.+..  +...++...|.-.|+.+.|.|..  + 
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            988764  345667899999999999875  57899999999999987653  34566777899999999998742  1 


Q ss_pred             ----------CEEEEEECCCcEEEEeCCCC--CceEEEecCCCceEEEEEEeCC--CcCEEEEeeCCCeEEEEECCC
Q psy4653         156 ----------NTFASASLDRTVKVWQLGSA--SPNFTLEGHEKGVNCVDYYHGG--DKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       156 ----------~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~d~~i~iwd~~~  218 (229)
                                ..|+||+.|..+++|++...  +.-..+++|.+-|..++|.|+-  ...+|+++|.||+|.||-.+.
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence                      46999999999999999775  2334588999999999998753  234899999999999998763

>KOG0301|consensus

Probab=99.93  E-value=2.8e-24  Score=176.57  Aligned_cols=197  Identities=21%  Similarity=0.352  Sum_probs=165.9

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..-.|.||...|.|++...++. +++|++|.++++|-...  +...++.|+.+|.++.+.|++ .++||+.|..|++|.-
T Consensus        93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~  168 (745)
T KOG0301|consen   93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG  168 (745)
T ss_pred             chhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC
Confidence            4456889999999999888887 99999999999997654  445588999999999999988 8889999999999975


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                        ++.++.|.+|++.|+.+++-++. .|++++.||.|++|++..  .+...+.+|...++++.... ++..++|++.|++
T Consensus       169 --~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrt  242 (745)
T KOG0301|consen  169 --GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRT  242 (745)
T ss_pred             --CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEecC-CCCeEEEecCCce
Confidence              57888999999999999998864 578999999999999943  35666789999999999554 5679999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +++|+..  ++...+.-....+.++.+..+++   +++|++||.||||..+.
T Consensus       243 lriW~~~--e~~q~I~lPttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  243 LRIWKKD--ECVQVITLPTTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEeecC--ceEEEEecCccceEEEEEeeCCC---EEEeccCceEEEEEecc
Confidence            9999886  55555554444688888776665   89999999999998764

>KOG4283|consensus

Probab=99.93  E-value=2.3e-24  Score=161.78  Aligned_cols=206  Identities=18%  Similarity=0.337  Sum_probs=166.4

Q ss_pred             ccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCe------EEEE---------EecCcCeEEEEEcCCC-CEEEE
Q psy4653          12 TARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQN------VKSF---------EVCDLPVRAAKFVPRK-NWIVT   74 (229)
Q Consensus        12 ~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~------~~~~---------~~~~~~v~~~~~~~~~-~~l~s   74 (229)
                      ..|...|++++..| .|+++++|+.||.+.+||++....      +...         ..|...|.++.|-|-+ -.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            36888999999988 589999999999999999975431      1111         1345578999999854 47788


Q ss_pred             EeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCC---CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653          75 GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ---PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        75 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~---~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                      ++-|..+++||.++.+....|+ -.+.|.+-+++|-.   .++++|..|-+|+++|+..+ .+...+.||.+.|..+.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEec
Confidence            8999999999999988777765 45678888888853   36889999999999999877 6788899999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCC-CceEEE--------------ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSA-SPNFTL--------------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~--------------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      |..+-.|+||+.|+.||+||++.. .+...+              ..|...++.++|.  .++.++++++.|..+++|+.
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t--Sd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT--SDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec--ccchhhhhccCccceEEeec
Confidence            988888999999999999999764 233333              2456668888884  45668999999999999999


Q ss_pred             CCCeE
Q psy4653         217 QNKTC  221 (229)
Q Consensus       217 ~~~~~  221 (229)
                      .+|..
T Consensus       276 ~~G~n  280 (397)
T KOG4283|consen  276 ESGRN  280 (397)
T ss_pred             ccCcc
Confidence            88753

>KOG0772|consensus

Probab=99.93  E-value=8.2e-25  Score=174.64  Aligned_cols=202  Identities=13%  Similarity=0.243  Sum_probs=158.7

Q ss_pred             cccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCe-EEEEEe-----cCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653          11 LTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQN-VKSFEV-----CDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      -+||...+.|-+|||+. ..+++++.||++++||++..+. ...++.     ..-++.++.|+|++++||+|..||+|.+
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI  343 (641)
T ss_pred             cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence            36999999999999985 5677888999999999987543 333332     1246899999999999999999999999


Q ss_pred             EECCCcc---eEEEeccCCC--ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce--eeEEEEEEcCCCCC
Q psy4653          84 FNYNTLE---RFHSFEAHSD--YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT--HYVMQIVINPKDNN  156 (229)
Q Consensus        84 wd~~~~~---~~~~~~~h~~--~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~  156 (229)
                      |+.....   ....-++|..  .|+||.||++|++|++=+.|.++++||+++..++..++.+-.  .+-+.++|+| +..
T Consensus       344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~k  422 (641)
T KOG0772|consen  344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDK  422 (641)
T ss_pred             eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-Cce
Confidence            9975432   2233467876  899999999999999999999999999998877766655432  2356788999 567


Q ss_pred             EEEEEE------CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         157 TFASAS------LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       157 ~l~s~~------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      ++++|.      ..+.+.+||..+-..+..+.-....|..+.|++.-  +.|+.|+.||.++++=
T Consensus       423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL--NQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL--NQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh--hheeeecCCCceEEEE
Confidence            888874      34679999988877777777666677777886543  4588899999998854

>KOG0270|consensus

Probab=99.93  E-value=9.4e-25  Score=171.27  Aligned_cols=210  Identities=17%  Similarity=0.282  Sum_probs=167.9

Q ss_pred             cccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~   88 (229)
                      -.+|++.|.+|+|+-. ...||+|+.|.+|++||+.++++...+..|..+|.++.|+|. ...|++|+.|+++.+.|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            3489999999999986 567788899999999999999999999988999999999995 67899999999999999873


Q ss_pred             cceE-EEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          89 LERF-HSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        89 ~~~~-~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      -... ..++ -.+.|..++|.|... .++++..||.|+-+|++...++......|.++|.++.+++....+++|++.|+.
T Consensus       319 ~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  319 PSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             ccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence            2111 1111 346789999998766 677889999999999999878888889999999999999989999999999999


Q ss_pred             EEEEeCCCCCceEEEecCC---CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         167 VKVWQLGSASPNFTLEGHE---KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      +++|++....+..+ ..|.   ....|.++.+.. ..+++.|+..+.+++||+.+...+.
T Consensus       398 Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~-a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  398 VKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDV-AFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             EEEEeecCCCCccc-ccccccccceeecccCCCc-ceEEEecCccceEEEeecccChhHH
Confidence            99999865443221 2222   124555554332 2367888888899999998765443

>KOG1407|consensus

Probab=99.93  E-value=7.8e-24  Score=156.35  Aligned_cols=213  Identities=17%  Similarity=0.288  Sum_probs=174.4

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE--EEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK--SFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVF   84 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iw   84 (229)
                      .+.+.+|..+|.+++|+-+|..|++|+.|+++.+|+++-.+...  .+..|...|-.++|.|. .+.+++++.|..|++|
T Consensus        13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            47789999999999999999999999999999999998875433  34566777888999985 5689999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      |+..++++.......+ =.-+.|+|++.+++.++.|-.|...|.++... .... .....+..+.|+. ++++|+.-..-
T Consensus        93 d~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~-~~~~-~~~~e~ne~~w~~-~nd~Fflt~Gl  168 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKI-VNEE-QFKFEVNEISWNN-SNDLFFLTNGL  168 (313)
T ss_pred             EeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccce-eehh-cccceeeeeeecC-CCCEEEEecCC
Confidence            9999999887764433 34578999999999999999999999876532 2221 2234567788884 56777666667


Q ss_pred             CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |.|.+-.....+++..++.|.....||.|  ++.++++|+|+.|..+-+||++.--|++.+.
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f--~p~GryfA~GsADAlvSLWD~~ELiC~R~is  228 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEF--DPDGRYFATGSADALVSLWDVDELICERCIS  228 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEE--CCCCceEeeccccceeeccChhHhhhheeec
Confidence            89999999999999999999877777777  5678899999999999999999877776654

>KOG0293|consensus

Probab=99.93  E-value=3.8e-25  Score=172.38  Aligned_cols=169  Identities=21%  Similarity=0.418  Sum_probs=139.3

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      ++++.+++-||..+|.-+.||||.++|++++.|..+.+||+.+|.....|+.. ...+.+++|.|+|..+++|+.|++|.
T Consensus       258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence            47788999999999999999999999999999999999999999998887654 56799999999999999999999999


Q ss_pred             EEECCCcc----------eEEEec-------------------------------cCCCceeEEEEcCC-----------
Q psy4653          83 VFNYNTLE----------RFHSFE-------------------------------AHSDYVRCVAVHPT-----------  110 (229)
Q Consensus        83 iwd~~~~~----------~~~~~~-------------------------------~h~~~i~~v~~~~~-----------  110 (229)
                      .||++...          ++..+.                               .-...|+++.+|.+           
T Consensus       338 ~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q  417 (519)
T KOG0293|consen  338 MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ  417 (519)
T ss_pred             EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC
Confidence            99875320          011000                               01223555565555           


Q ss_pred             ----------------------------------CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC
Q psy4653         111 ----------------------------------QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN  156 (229)
Q Consensus       111 ----------------------------------~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (229)
                                                        ..++++||+|++|+||+..++ ++..++.||...|.+|+|+|.+..
T Consensus       418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHH
Confidence                                              256888999999999998766 557778999999999999999999


Q ss_pred             EEEEEECCCcEEEEeCC
Q psy4653         157 TFASASLDRTVKVWQLG  173 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~  173 (229)
                      +|||||.||+||+|-..
T Consensus       497 m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  497 MFASASDDGTIRIWGPS  513 (519)
T ss_pred             HhhccCCCCeEEEecCC
Confidence            99999999999999664

>KOG0270|consensus

Probab=99.93  E-value=2.7e-24  Score=168.72  Aligned_cols=191  Identities=19%  Similarity=0.333  Sum_probs=156.4

Q ss_pred             CCCeEEEEEecCeEEEEEcCCCCe---EEEE------------------EecCcCeEEEEEcCC-CCEEEEEeCCCeEEE
Q psy4653          26 TEPWMLASLYNGHVHVWNHETNQN---VKSF------------------EVCDLPVRAAKFVPR-KNWIVTGSDDMQVCV   83 (229)
Q Consensus        26 ~~~~l~~~~~dg~v~~wd~~~~~~---~~~~------------------~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~i   83 (229)
                      .|+++|.|+.|..|.|||+.=-..   ...+                  ..|.+.|..+.|+.. .+.||+||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            357999999999999999852111   0011                  135566778888875 468999999999999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ||++++++...+.-|.+.|.++.|+|..+ ++++|+.|++|.+.|++........+. -.+.|-.+.|+|.....++++.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEec
Confidence            99999999999998999999999999765 788999999999999985433222222 2456889999999999999999


Q ss_pred             CCCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         163 LDRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       163 ~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .||+++-+|+|.. +++++++.|..+|.+++++. ....+|+|++.|+.|++|++..
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~-~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI-QTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             CCceEEeeecCCCCCceeEEEeccCCcceEEecC-CCCcceeeccccceEEEEeecC
Confidence            9999999999875 89999999999999999864 3445899999999999999864

>KOG1036|consensus

Probab=99.92  E-value=3.1e-23  Score=156.21  Aligned_cols=211  Identities=17%  Similarity=0.290  Sum_probs=165.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +++.+|. |..++.+++|.+ ....++|+.||.|+++|++++.. ..+..|..++.|+.+.+..+.+++|++|+.|++||
T Consensus        46 ~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   46 SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD  122 (323)
T ss_pred             hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence            3444455 889999999997 44689999999999999999776 34466888999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      .........+. ..+.|.|+....  ..|+.|+.|..|.+||+++.....+..+. -..++.++.+.| ++.=++.++-|
T Consensus       123 ~R~~~~~~~~d-~~kkVy~~~v~g--~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSie  198 (323)
T KOG1036|consen  123 PRNKVVVGTFD-QGKKVYCMDVSG--NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIE  198 (323)
T ss_pred             ccccccccccc-cCceEEEEeccC--CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeec
Confidence            98644444443 334777876654  68999999999999999876554433332 245678899888 56667778999


Q ss_pred             CcEEEEeCCCC----CceEEEecCCC---------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         165 RTVKVWQLGSA----SPNFTLEGHEK---------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       165 ~~i~~wd~~~~----~~~~~~~~h~~---------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      |++.+=.+...    +..+.+++|..         +|++++|++  -.+.|+||+.||.|.+||..+.+-++.+
T Consensus       199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp--~~~tfaTgGsDG~V~~Wd~~~rKrl~q~  270 (323)
T KOG1036|consen  199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP--IHGTFATGGSDGIVNIWDLFNRKRLKQL  270 (323)
T ss_pred             ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc--ccceEEecCCCceEEEccCcchhhhhhc
Confidence            99999887765    55677788753         588999965  3457999999999999999887765544

>KOG1446|consensus

Probab=99.92  E-value=9.8e-23  Score=154.01  Aligned_cols=205  Identities=17%  Similarity=0.298  Sum_probs=163.0

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +..|-+.||+++|++++.+|-+..+++++.|++|++||++..+++..+.....  ..++|.|+|-++|+|.....|+++|
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEE
Confidence            34566899999999999999999999999999999999999888777665443  4478999999999998888999999


Q ss_pred             CCCcc--eEEEec---cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE---EEEEEcCCCCCE
Q psy4653          86 YNTLE--RFHSFE---AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV---MQIVINPKDNNT  157 (229)
Q Consensus        86 ~~~~~--~~~~~~---~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~  157 (229)
                      ++..+  +...+.   +-..+.+.|.|+|+|++++.++..+.+.+.|--++. ....+.++...-   ....+.| ++..
T Consensus       169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ftP-ds~F  246 (311)
T KOG1446|consen  169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFTP-DSKF  246 (311)
T ss_pred             ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccCCCCcceeEEECC-CCcE
Confidence            97542  333332   335678999999999999999999999999976663 455555553322   4556778 7899


Q ss_pred             EEEEECCCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         158 FASASLDRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +++|+.||+|.+|++.++..+..+++ +..++.|+.|  ++...+++  +.+..+.+|=...
T Consensus       247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f--nP~~~mf~--sa~s~l~fw~p~~  304 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF--NPRYAMFV--SASSNLVFWLPDE  304 (311)
T ss_pred             EEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc--CCceeeee--ecCceEEEEeccc
Confidence            99999999999999999999998888 6788899988  44433444  5555788887654

>KOG0288|consensus

Probab=99.92  E-value=1.5e-23  Score=163.35  Aligned_cols=207  Identities=18%  Similarity=0.306  Sum_probs=165.4

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      .+..+..++.|...+|.+++|.+++.++++.+.|+.+++||+...+...++.+|.+.|+++.|......+++|+.|.+|+
T Consensus       207 ~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK  286 (459)
T KOG0288|consen  207 EKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK  286 (459)
T ss_pred             chhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhh
Confidence            34556777888889999999999999999999999999999999999999999999999998876655577777777777


Q ss_pred             EEECCC---------------------------------------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcE
Q psy4653          83 VFNYNT---------------------------------------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI  123 (229)
Q Consensus        83 iwd~~~---------------------------------------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v  123 (229)
                      +||+..                                       ...+.....+ +.|+++..++++..+++++.|..+
T Consensus       287 ~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl  365 (459)
T KOG0288|consen  287 LWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTL  365 (459)
T ss_pred             hhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCce
Confidence            776643                                       2223333322 368999999999999999999999


Q ss_pred             EEEecCCceeeeeeeecc----eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC-CC-ceEEEEEEeCC
Q psy4653         124 KLWNWEKAWACQQVFEGH----THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH-EK-GVNCVDYYHGG  197 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-~~-~v~~~~~~~~~  197 (229)
                      .+.|++.. .+...+...    .+..+.+.|+| ++.|+++||.||.|++|++.+++..+.+... .. .|.++.|.+.+
T Consensus       366 ~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  366 KVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             eeeecccc-cEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence            99999765 333333211    22378899999 6899999999999999999999988877653 33 59999996654


Q ss_pred             CcCEEEEeeCCCeEEEE
Q psy4653         198 DKPYLISGADDRLVKIW  214 (229)
Q Consensus       198 ~~~~l~s~s~d~~i~iw  214 (229)
                        ..|++++.++.+.+|
T Consensus       444 --~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  444 --SGLLSADKQKAVTLW  458 (459)
T ss_pred             --chhhcccCCcceEec
Confidence              469999999999999

>KOG0642|consensus

Probab=99.92  E-value=1.1e-23  Score=169.67  Aligned_cols=218  Identities=22%  Similarity=0.407  Sum_probs=180.2

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC--------CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN--------QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM   79 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~   79 (229)
                      +-++..|.+.+.+++|+|..+.|++++.||.+++|+++..        +++..|.+|..+|.|+++.+.+..+.+|+-||
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            3367789999999999999999999999999999999321        45788999999999999999999999999999


Q ss_pred             eEEEEECCCc----------ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee--------------
Q psy4653          80 QVCVFNYNTL----------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ--------------  135 (229)
Q Consensus        80 ~i~iwd~~~~----------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~--------------  135 (229)
                      .|+.|++...          .....+.+|.+.|..+++|.....|++++.||++++|+.....++.              
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD  446 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence            9999965321          1235678999999999999999999999999999999864432200              


Q ss_pred             -----------------------------eeeec-------ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceE
Q psy4653         136 -----------------------------QVFEG-------HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF  179 (229)
Q Consensus       136 -----------------------------~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  179 (229)
                                                   .++..       ....+..+.++| +..+.+++..|+.|+++|..++++++
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccch
Confidence                                         00000       012345666777 46788899999999999999999999


Q ss_pred             EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       180 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ....|...+.++++.  +++.+|++++.||.+++|......|++...++
T Consensus       526 s~~a~~~svtslai~--~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  526 SMVAHKDSVTSLAID--PNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             heeeccceecceeec--CCCceEEeecCCceeehhhccchheeeccccc
Confidence            999999999999994  46679999999999999999998888877664

>KOG0647|consensus

Probab=99.92  E-value=1e-22  Score=153.12  Aligned_cols=192  Identities=17%  Similarity=0.248  Sum_probs=154.7

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC--EEEEEeCCCeEEEEEC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVFNY   86 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~i~iwd~   86 (229)
                      +....|..+|.+++|+.+|.-+++|+-|+.+++||+.+++. ..+..|+.+|.++.|.+..+  +|+|||+|.+|+.||.
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~  144 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT  144 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence            44667999999999999999999999999999999999855 66688999999999998776  8999999999999998


Q ss_pred             CCcceEEEec-------------------------------------cCCC----ceeEEEEcCCCCEEEEEeCCCcEEE
Q psy4653          87 NTLERFHSFE-------------------------------------AHSD----YVRCVAVHPTQPFLLTSSDDMLIKL  125 (229)
Q Consensus        87 ~~~~~~~~~~-------------------------------------~h~~----~i~~v~~~~~~~~~~s~~~d~~v~l  125 (229)
                      +...++..++                                     .+..    .++||+..++...++.|+-+|.+-+
T Consensus       145 R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i  224 (347)
T KOG0647|consen  145 RSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAI  224 (347)
T ss_pred             CCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEE
Confidence            7654332221                                     1111    2678888888888888999999888


Q ss_pred             EecCCc-eeeeeeeecce---------eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEe
Q psy4653         126 WNWEKA-WACQQVFEGHT---------HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH  195 (229)
Q Consensus       126 wd~~~~-~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~  195 (229)
                      ..+..+ ....-.|.+|.         ..|..++|+| ....|+|++.||+..+||-.....+++.+.|..+|.|.+|..
T Consensus       225 q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~  303 (347)
T KOG0647|consen  225 QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR  303 (347)
T ss_pred             EecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence            888763 22344566664         3578899999 467999999999999999988888889899999999999954


Q ss_pred             CCCcCEEEE
Q psy4653         196 GGDKPYLIS  204 (229)
Q Consensus       196 ~~~~~~l~s  204 (229)
                        ++.+++-
T Consensus       304 --~G~ifaY  310 (347)
T KOG0647|consen  304 --NGSIFAY  310 (347)
T ss_pred             --CCCEEEE
Confidence              4455554

>KOG4328|consensus

Probab=99.91  E-value=2.8e-23  Score=163.68  Aligned_cols=208  Identities=20%  Similarity=0.299  Sum_probs=166.8

Q ss_pred             hhhcccCCCceEEEEEccCCC--eEEEEEecCeEEEEEcCCC----CeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCe
Q psy4653           8 KRKLTARSDRVKCCDLHPTEP--WMLASLYNGHVHVWNHETN----QNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQ   80 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~--~l~~~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~   80 (229)
                      ...++-|+.+|.+++|||..+  .+++|...|+|-+||+.+.    .-+..+..|..+|.++.|+|. ...+++.|.||.
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            344667899999999999765  7777889999999999532    224556677889999999995 467889999999


Q ss_pred             EEEEECCCcc--eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          81 VCVFNYNTLE--RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        81 i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      |++-|++...  .+..++.-...+..+.|+.+...++.+..=|...+||++....-...+.-|...|..++++|....+|
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            9999998653  33444334556788999999998888888889999999876554444556888999999999999999


Q ss_pred             EEEECCCcEEEEeCCCCC----ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         159 ASASLDRTVKVWQLGSAS----PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      +|+|.|++.++||++.-.    |+...-.|...|++..|++.+ + -|+|.+.|..|+|||..
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-g-tl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-G-TLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-C-ceEeeccCCceEEeecc
Confidence            999999999999997532    344556799999998887654 3 39999999999999984

>KOG2445|consensus

Probab=99.91  E-value=7.3e-22  Score=148.99  Aligned_cols=215  Identities=18%  Similarity=0.244  Sum_probs=164.4

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC----eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ----NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVCVF   84 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iw   84 (229)
                      -.+|.+=|.++.|.+-|+.+++++.|++|+|||.++..    +....+.|+..|..+.|.+.  |+.+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            46899999999999999999999999999999975543    34566788999999999876  7899999999999999


Q ss_pred             ECCC------c---ceEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCc-----e----------------
Q psy4653          85 NYNT------L---ERFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKA-----W----------------  132 (229)
Q Consensus        85 d~~~------~---~~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~-----~----------------  132 (229)
                      .-..      +   .....+......|+.+.|.|.  |-.+++++.||.+|||+..+.     +                
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            7521      1   123445556678999999985  557899999999999974320     0                


Q ss_pred             ---------------------------------------------eeeeeeecceeeEEEEEEcCCCC---CEEEEEECC
Q psy4653         133 ---------------------------------------------ACQQVFEGHTHYVMQIVINPKDN---NTFASASLD  164 (229)
Q Consensus       133 ---------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d  164 (229)
                                                                   .....+.+|..+|+.+.|.|.-+   .++|+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence                                                         00011235678899999988543   379999999


Q ss_pred             CcEEEEeCCCC--------------------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC---CCeE
Q psy4653         165 RTVKVWQLGSA--------------------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ---NKTC  221 (229)
Q Consensus       165 ~~i~~wd~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~---~~~~  221 (229)
                      | |++|.++..                    +.+..+.+|...|-.+.|  +..+.+|++.+.||.||+|...   ..+|
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w--NmtGtiLsStGdDG~VRLWkany~n~~kC  325 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW--NMTGTILSSTGDDGCVRLWKANYNNLWKC  325 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE--eeeeeEEeecCCCceeeehhhhhhhhhee
Confidence            9 999998731                    122345678888998888  4567799999999999999964   3467


Q ss_pred             EEeeccC
Q psy4653         222 VQTLESG  228 (229)
Q Consensus       222 ~~~~~~~  228 (229)
                      ...+++.
T Consensus       326 ~sv~~~e  332 (361)
T KOG2445|consen  326 TSVLKAE  332 (361)
T ss_pred             eeEEecc
Confidence            6666543

>KOG1007|consensus

Probab=99.91  E-value=1.5e-22  Score=151.61  Aligned_cols=202  Identities=21%  Similarity=0.346  Sum_probs=164.2

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe-EEEEE-----ecCcCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN-VKSFE-----VCDLPVRAAKFVP--RKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iw   84 (229)
                      .+-.+|.|+.|.|++.-+++-. |..|.+|++..+.. +..+.     .+....++-.|+|  +++.+++. .|++++.|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence            4556999999999988777766 99999999987655 33222     1245678889998  57777664 68899999


Q ss_pred             ECCCcceEEEe-ccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          85 NYNTLERFHSF-EAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        85 d~~~~~~~~~~-~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      |.++++....+ .+|...|..++|.|+.+ ++++++.|+.|++||.+..+.+...+.+|...|.++.|+|....+++||+
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence            99998876555 57888999999999877 57899999999999999887788888999999999999998888999999


Q ss_pred             CCCcEEEEeCCCC------------------------Cc-----eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEE
Q psy4653         163 LDRTVKVWQLGSA------------------------SP-----NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  213 (229)
Q Consensus       163 ~d~~i~~wd~~~~------------------------~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~i  213 (229)
                      .|..+.+|...+.                        ++     +.++..|+..|++++|+. .+..++|+-|.||.+.|
T Consensus       279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs-adPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS-ADPWIFASLSYDGRVII  357 (370)
T ss_pred             CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc-CCCeeEEEeccCceEEe
Confidence            9999999986531                        11     235667999999999964 45678999999999988


Q ss_pred             EECC
Q psy4653         214 WDYQ  217 (229)
Q Consensus       214 wd~~  217 (229)
                      =.+.
T Consensus       358 s~V~  361 (370)
T KOG1007|consen  358 SSVP  361 (370)
T ss_pred             ecCC
Confidence            5553

>KOG0302|consensus

Probab=99.91  E-value=7e-23  Score=158.10  Aligned_cols=207  Identities=18%  Similarity=0.283  Sum_probs=162.1

Q ss_pred             hhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCe---EEEEEecCcCeEEEEEcCCC-CEEEEEeCCCe
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQN---VKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQ   80 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~   80 (229)
                      ....++.+|...=++++|||-. ..|++|---+.|++|...++.-   ..-|..|...|-.+.|+|.. +.|+++|.||+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            3445678999999999999943 3477777778999999988754   23355688899999999964 58999999999


Q ss_pred             EEEEECCCc--ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEEEEcCCCCC
Q psy4653          81 VCVFNYNTL--ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        81 i~iwd~~~~--~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~  156 (229)
                      |+|||++.+  +.....++|..-|+.+.|+..-++|++|+.||+++|||+++-.  ++...|+-|..+|+++.|+|.+..
T Consensus       282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            999999876  2444558999999999999999999999999999999997642  345678889999999999999888


Q ss_pred             EEEEEECCCcEEEEeCCCCC-------------------ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         157 TFASASLDRTVKVWQLGSAS-------------------PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~-------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      .|++++.|..|.+||+.-..                   .++..++ ...+..+.|++.- ..+|++.+.|| +.||.
T Consensus       362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~Qi-PG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQI-PGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCC-CCeEEEecccc-eeEEE
Confidence            99999999999999985321                   1222222 2346667776543 34888988888 44543

>KOG4378|consensus

Probab=99.91  E-value=2.7e-23  Score=165.54  Aligned_cols=218  Identities=17%  Similarity=0.282  Sum_probs=179.4

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ...+++.|-  .-.|++......++++|+..+.|+|||++...+.+.++.|+..|+++.|+..+.+||+++..|.|.|..
T Consensus        72 p~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~  149 (673)
T KOG4378|consen   72 PRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHG  149 (673)
T ss_pred             ceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence            334444443  344555555558999999999999999998777888888999999999999999999999999999999


Q ss_pred             CCCcceEEEeccC-CCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          86 YNTLERFHSFEAH-SDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        86 ~~~~~~~~~~~~h-~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      +.++.....|.-. ...|+-+.|+|..+. |.+++.+|.|.+||+....+.....+.|..+...++|+|.++.+|++.+.
T Consensus       150 ~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~  229 (673)
T KOG4378|consen  150 TKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY  229 (673)
T ss_pred             cccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence            9988877777544 456789999998875 56889999999999987766677778899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC-CeEEEeeccC
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLESG  228 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~  228 (229)
                      |++|.+||.+.......+.. ..+...++|  .+++.+|+.|...|.|..||++. ..++.++.+|
T Consensus       230 Dkki~~yD~~s~~s~~~l~y-~~Plstvaf--~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah  292 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTDRLTY-SHPLSTVAF--SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH  292 (673)
T ss_pred             cceEEEeecccccccceeee-cCCcceeee--cCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence            99999999987665555543 457888999  45677999999999999999986 4577777665

>KOG0307|consensus

Probab=99.90  E-value=1.2e-23  Score=181.03  Aligned_cols=215  Identities=14%  Similarity=0.252  Sum_probs=178.7

Q ss_pred             chhhhhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcCCC-CEEEEEeCCCe
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVPRK-NWIVTGSDDMQ   80 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~sg~~d~~   80 (229)
                      ..+..++..|+..|..++|+|..+ .|++|+.||.|.|||++..+....+.  ...+.|.+++|+.+- ..|++|+.+|.
T Consensus       106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            345667889999999999999876 88889999999999999866555542  134679999999864 57899999999


Q ss_pred             EEEEECCCcceEEEeccCCC--ceeEEEEcCCCC-EEEEEeCCC---cEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSD--YVRCVAVHPTQP-FLLTSSDDM---LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~--~i~~v~~~~~~~-~~~s~~~d~---~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      +.|||++..+.+-.+.-+..  .+..+.|||+.. .+++++.|.   .|.+||++......+++++|...|.++.|++.|
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence            99999998877766655544  367899999876 566666553   599999998877888899999999999999998


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      ..+++|++.|++|.+|+..+++.+.++......+..+.|++.. ...++.++-||+|.|+.+....
T Consensus       266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~-P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN-PSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCC-cchhhhheeccceeeeeeecCC
Confidence            8999999999999999999999888888766778889997643 3378889999999999997654

>KOG2096|consensus

Probab=99.90  E-value=7.9e-22  Score=149.63  Aligned_cols=204  Identities=16%  Similarity=0.271  Sum_probs=151.5

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe-----EEEEEecCcCeEEEEEcCCCCEEEEEeC-CCeE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN-----VKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQV   81 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i   81 (229)
                      ...|+||.+.|++++|+.+|+.|++.+.|+.|++|+++.-..     ++.-. .-+.-+.+.|.|+-+-++.... ..++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence            345899999999999999999999999999999999986322     22111 1135688999999876555444 4579


Q ss_pred             EEEECCC---cce---------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEE
Q psy4653          82 CVFNYNT---LER---------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV  149 (229)
Q Consensus        82 ~iwd~~~---~~~---------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~  149 (229)
                      ++|....   +..         +..-+-|+-.|..+..-..+.++.+++.|..|.+|+++ + +.+.....-...-+..+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeecccccccccee
Confidence            9996532   211         11112345566778888889999999999999999997 3 33333332223345567


Q ss_pred             EcCCCCCEEEEEECCCcEEEEeC--------CCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         150 INPKDNNTFASASLDRTVKVWQL--------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       150 ~~~~~~~~l~s~~~d~~i~~wd~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      ++| +|..+++++..--+++|..        +..+..+++.+|...|...+|++  +...++|.|.||+++|||++
T Consensus       236 vSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn--~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  236 VSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN--SSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC--CcceeEEEecCCcEEEeecc
Confidence            788 7899999999999999974        23356789999999999999954  45579999999999999975

>KOG1274|consensus

Probab=99.90  E-value=1.8e-21  Score=164.50  Aligned_cols=199  Identities=19%  Similarity=0.303  Sum_probs=165.9

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      +...|.+++..  +..|++|+.+++|.++...+++.-..+.....+++.++|+.+|+++|.|+.|-.|++-+..+.....
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~  132 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK  132 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe
Confidence            55666666654  4489999999999999999988766666667799999999999999999999999999998888888


Q ss_pred             EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec--------ceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG--------HTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      .+.+|.++|.++.|+|.+.+|++++.||.|++||++++.. ...+.+        -...+..++|+|. +..|+..+.|+
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~  210 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDN  210 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCC-CCeEEeeccCC
Confidence            8999999999999999999999999999999999986522 222111        1445788999994 56777788899


Q ss_pred             cEEEEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         166 TVKVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .|++|+....+..+.+..  +...+.++.|+  +++.|||+++.||.|.|||.++
T Consensus       211 ~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws--PnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  211 TVKVYSRKGWELQFKLRDKLSSSKFSDLQWS--PNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eEEEEccCCceeheeecccccccceEEEEEc--CCCcEEeeeccCCcEEEEeccc
Confidence            999999999999888865  33447788884  5678999999999999999984

>KOG1408|consensus

Probab=99.90  E-value=1.9e-22  Score=166.88  Aligned_cols=201  Identities=17%  Similarity=0.308  Sum_probs=168.7

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCc-c
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR---KNWIVTGSDDMQVCVFNYNTL-E   90 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~~~-~   90 (229)
                      .-.+.|++.+|++++|++|..-|.++++++..-....+.+.|+.+|.|+.|+..   .++||+++.|+-|.++|+... .
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            457899999999999999999999999999998888888999999999999864   468999999999999998532 2


Q ss_pred             eEEEeccCCCcee-------------------------------------------------EEEEcCCCCEEEEEeCCC
Q psy4653          91 RFHSFEAHSDYVR-------------------------------------------------CVAVHPTQPFLLTSSDDM  121 (229)
Q Consensus        91 ~~~~~~~h~~~i~-------------------------------------------------~v~~~~~~~~~~s~~~d~  121 (229)
                      .++.+.+|...|+                                                 .+++.|+.+++++++.|+
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr  618 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR  618 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence            3344444444444                                                 455555567899999999


Q ss_pred             cEEEEecCCceeeeeeeec---ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCC
Q psy4653         122 LIKLWNWEKAWACQQVFEG---HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD  198 (229)
Q Consensus       122 ~v~lwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~  198 (229)
                      .|+|||++.+++ .+.|++   |.+...++...| .+.|+++.+.|+++.++|+-+++++..+.+|.+.|..+.|.  ++
T Consensus       619 nirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~--nD  694 (1080)
T KOG1408|consen  619 NIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL--ND  694 (1080)
T ss_pred             ceEEEeccccce-eeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec--cc
Confidence            999999988754 455554   556678888998 68999999999999999999999999999999999999994  46


Q ss_pred             cCEEEEeeCCCeEEEEECCCC
Q psy4653         199 KPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       199 ~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ..+|++.+.||.|-+|.+...
T Consensus       695 CkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  695 CKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             chhheeecCCceEEEEECchh
Confidence            678999999999999997653

>KOG2919|consensus

Probab=99.90  E-value=3e-22  Score=152.10  Aligned_cols=207  Identities=19%  Similarity=0.292  Sum_probs=162.6

Q ss_pred             CceEEEEEc-------cCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-----cCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653          16 DRVKCCDLH-------PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-----LPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus        16 ~~v~~~~~~-------p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      .-|...+|-       |+..++++++.+..|++||..+|+....|...+     ....++.|+|+|..|.+| ..+.|++
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV  183 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence            346666664       788888999999999999999999988776543     357899999999999887 5667999


Q ss_pred             EEC-CCcce--EEEec-----cCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653          84 FNY-NTLER--FHSFE-----AHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        84 wd~-~~~~~--~~~~~-----~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      ||+ +++..  +....     +..+.|.|++|+|... .++.++.-.++-|+..... .+..++-+|.+.|+.+.|.+ +
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~e-d  261 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE-D  261 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEecc-C
Confidence            998 44432  22222     2356789999999877 7899999999888887665 34555669999999999998 6


Q ss_pred             CCEEEEEE-CCCcEEEEeCCCC-CceEEEecCCC-ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC-CeEEEee
Q psy4653         155 NNTFASAS-LDRTVKVWQLGSA-SPNFTLEGHEK-GVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTL  225 (229)
Q Consensus       155 ~~~l~s~~-~d~~i~~wd~~~~-~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~  225 (229)
                      ++.|.+|+ .|-+|..||++.. .++..+..|.. .-.-|-|.-.+.+++|++|+.||.|++||.+. ++.+..+
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence            77888877 7889999999864 57788888876 44456666677788999999999999999987 5544433

>KOG0639|consensus

Probab=99.89  E-value=2.1e-22  Score=160.72  Aligned_cols=196  Identities=15%  Similarity=0.305  Sum_probs=162.9

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE--EEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK--SFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      =+.++.+.|||+.|++|+.-.++.|||+.+...--  .+.........++.+|+.+..+++..||.|.|||+.....++.
T Consensus       467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq  546 (705)
T KOG0639|consen  467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ  546 (705)
T ss_pred             ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec
Confidence            47889999999999999999999999998754422  2223334678899999999999999999999999999999999


Q ss_pred             eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee---------------------------------------
Q psy4653          95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ---------------------------------------  135 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~---------------------------------------  135 (229)
                      |++|++.+.|+.++++|..|.||+-|++||.||++++.++.                                       
T Consensus       547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence            99999999999999999999999999999999987643221                                       


Q ss_pred             eeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      ..+..|...|..+.|.+ -+..|+|-+.|.-+..|...-+..++..+. ...|.+.+++.  +..+++|||.|++-.+|.
T Consensus       627 yqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~--ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  627 YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISF--DDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             eeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccc-cCcceeeeecc--CceEEEecCCCcceEEEE
Confidence            11123566788888887 689999999999999999888888877765 45688888854  456999999999888876


Q ss_pred             C
Q psy4653         216 Y  216 (229)
Q Consensus       216 ~  216 (229)
                      +
T Consensus       703 V  703 (705)
T KOG0639|consen  703 V  703 (705)
T ss_pred             E
Confidence            5

>KOG1063|consensus

Probab=99.89  E-value=4.3e-22  Score=163.86  Aligned_cols=212  Identities=20%  Similarity=0.299  Sum_probs=167.3

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecC-----eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNG-----HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ   80 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg-----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~   80 (229)
                      -..+++.||.-+|+|++.+|+++++++++...     -|++|+..+=+.++.+..|+.-|+.+.|+|+|++|++.+.|++
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence            45678999999999999999999999998553     5889999987777888999999999999999999999999999


Q ss_pred             EEEEECCCcc----eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc--eeeee-eeecceeeEEEEEEcCC
Q psy4653          81 VCVFNYNTLE----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA--WACQQ-VFEGHTHYVMQIVINPK  153 (229)
Q Consensus        81 i~iwd~~~~~----~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~--~~~~~-~~~~~~~~v~~~~~~~~  153 (229)
                      +.+|......    .....+.|+..|....|+|++.+|+|+|.|++|++|...+.  +.+.+ ....+..+|+.+++.|.
T Consensus       596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV  675 (764)
T ss_pred             EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence            9999874321    23346789999999999999999999999999999998765  33333 34557788999888764


Q ss_pred             CC----CEEEEEECCCcEEEEeCCCCC-----ceEEE-------ecCCCceEEEEEEeC--------CCcCEEEEeeCCC
Q psy4653         154 DN----NTFASASLDRTVKVWQLGSAS-----PNFTL-------EGHEKGVNCVDYYHG--------GDKPYLISGADDR  209 (229)
Q Consensus       154 ~~----~~l~s~~~d~~i~~wd~~~~~-----~~~~~-------~~h~~~v~~~~~~~~--------~~~~~l~s~s~d~  209 (229)
                      +.    ..++.|-..|.|.+|......     ..+.+       .+|...|+-+.|.|.        .+.-.|+.|++|.
T Consensus       676 ~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~  755 (764)
T KOG1063|consen  676 DHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE  755 (764)
T ss_pred             ccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence            33    367788899999999865211     11221       245566888888653        1222479999999


Q ss_pred             eEEEEECC
Q psy4653         210 LVKIWDYQ  217 (229)
Q Consensus       210 ~i~iwd~~  217 (229)
                      ++||+++.
T Consensus       756 ~vri~nv~  763 (764)
T KOG1063|consen  756 SVRIFNVD  763 (764)
T ss_pred             eeEEeecc
Confidence            99999875

>KOG0641|consensus

Probab=99.89  E-value=1e-20  Score=137.67  Aligned_cols=210  Identities=20%  Similarity=0.285  Sum_probs=161.6

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcC------CCC-----e-E---EEEEecCcCeEEEEEcCCCCEEEEEeCC
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE------TNQ-----N-V---KSFEVCDLPVRAAKFVPRKNWIVTGSDD   78 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~------~~~-----~-~---~~~~~~~~~v~~~~~~~~~~~l~sg~~d   78 (229)
                      -+..|.+++|||.|...++|+..+++++--..      .+.     + .   +.-+.|...+.|.+|+|.|.+|++|++|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            35689999999999999999999999985432      211     1 1   1123456789999999999999999999


Q ss_pred             CeEEEEECCCcc-----eEEEeccCCCceeEEEEcCC----CCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEE
Q psy4653          79 MQVCVFNYNTLE-----RFHSFEAHSDYVRCVAVHPT----QPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQI  148 (229)
Q Consensus        79 ~~i~iwd~~~~~-----~~~~~~~h~~~i~~v~~~~~----~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~  148 (229)
                      ..|++..++...     .-.++.-|.+-|+.++|-.+    +.++++++ .|..|++=|...+ +....+.+|.+-|..+
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE
Confidence            999998765322     22456678899999999654    34666654 4778888888766 4567788999888777


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec--CC-----CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG--HE-----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--h~-----~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      .-  .++-+|++|+.|.+||+||++-..++.++..  |.     ..|.+++.  .+.+++|++|-.|....+||++.+..
T Consensus       190 ys--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v--dpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  190 YS--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV--DPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EE--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE--CCCcceeeeccCCCceEEEEeeCCce
Confidence            53  2578999999999999999998877776643  22     34666776  45667999999999999999999999


Q ss_pred             EEeeccC
Q psy4653         222 VQTLESG  228 (229)
Q Consensus       222 ~~~~~~~  228 (229)
                      ++.+..|
T Consensus       266 iq~f~ph  272 (350)
T KOG0641|consen  266 IQRFHPH  272 (350)
T ss_pred             eeeeCCC
Confidence            9988765

>KOG1273|consensus

Probab=99.89  E-value=1.5e-21  Score=147.95  Aligned_cols=207  Identities=14%  Similarity=0.294  Sum_probs=154.4

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      -.|+.|++-|.+||+|+.||.|.|||..|...-+.+.+|-.+|.+++|+++|+.|+++|.|.+|.+||+..+.+++.+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            57999999999999999999999999999888888899999999999999999999999999999999977665443220


Q ss_pred             ---------CCC-------------------------------------ceeEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy4653          98 ---------HSD-------------------------------------YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA  131 (229)
Q Consensus        98 ---------h~~-------------------------------------~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~  131 (229)
                               |..                                     .-.+..|++.|+++++|...|.+.++|.+..
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence                     100                                     0013346666889999999999999998765


Q ss_pred             eeeeeeeecc-eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC-------C--ceEEEecC--CCceEEEEEEeCCCc
Q psy4653         132 WACQQVFEGH-THYVMQIVINPKDNNTFASASLDRTVKVWQLGSA-------S--PNFTLEGH--EKGVNCVDYYHGGDK  199 (229)
Q Consensus       132 ~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~--~~~~~~~h--~~~v~~~~~~~~~~~  199 (229)
                       .+...+.-. ...|.++.++. .+..|+..+.|+.||.|+.+.-       +  +.+.++.-  ...=.++.|  ++++
T Consensus       186 -e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf--s~dg  261 (405)
T KOG1273|consen  186 -ECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF--SGDG  261 (405)
T ss_pred             -eeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee--cCCc
Confidence             333333222 35677788865 6889999999999999987521       1  11111110  111234555  4577


Q ss_pred             CEEEEee-CCCeEEEEECCCCeEEEeeccC
Q psy4653         200 PYLISGA-DDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       200 ~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .|+.+|+ .-..++||.-..|..++.|++.
T Consensus       262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~  291 (405)
T KOG1273|consen  262 EYVCAGSARAHALYIWEKSIGSLVKILHGT  291 (405)
T ss_pred             cEEEeccccceeEEEEecCCcceeeeecCC
Confidence            7877766 4567999999999999988764

>KOG0307|consensus

Probab=99.89  E-value=5e-23  Score=177.34  Aligned_cols=211  Identities=18%  Similarity=0.323  Sum_probs=168.3

Q ss_pred             CCceEEEEEccCCCe----EEEEEecCeEEEEEcCC---C---CeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEE
Q psy4653          15 SDRVKCCDLHPTEPW----MLASLYNGHVHVWNHET---N---QNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCV   83 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~----l~~~~~dg~v~~wd~~~---~---~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~i   83 (229)
                      ..+-+.|+|.+.+..    ++.|..||.|.+||...   +   ..+..+..|..+|..++|++. +++||+|++||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            457899999998877    55567999999999875   2   235566778899999999996 559999999999999


Q ss_pred             EECCCcceEEEe--ccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecce--eeEEEEEEcCCCCCEE
Q psy4653          84 FNYNTLERFHSF--EAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHT--HYVMQIVINPKDNNTF  158 (229)
Q Consensus        84 wd~~~~~~~~~~--~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l  158 (229)
                      ||++.-+.-..+  ....+.|.+++|...- +.|++++.+|.+.|||++..+.+... ..+.  ..+..+.|+|..-..+
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-s~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-SDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-ccCCCccceeeeeeCCCCceee
Confidence            999764322222  2245789999999764 46789999999999999877544433 2222  3467899999887888


Q ss_pred             EEEECCC---cEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         159 ASASLDR---TVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       159 ~s~~~d~---~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +.++.|.   .|.+||+|. ..+++++++|..+|.+++|++.+ ..+|+|++.|+.|.+|+.++++.+..+..
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D-~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD-PRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC-chhhhcccCCCCeeEecCCCceEeeecCC
Confidence            8887654   899999875 46788899999999999998764 35899999999999999999999988765

>KOG4283|consensus

Probab=99.89  E-value=4.3e-21  Score=144.31  Aligned_cols=166  Identities=23%  Similarity=0.368  Sum_probs=137.5

Q ss_pred             hhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC---CCEEEEEeCCCeEEEE
Q psy4653           9 RKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR---KNWIVTGSDDMQVCVF   84 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iw   84 (229)
                      .+-.+|.-.|..+.|-|- ...+.+++.|.++++||++|-+....|+-. +.|.+-.++|-   ..++|+|..|-+|++-
T Consensus        95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen   95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence            345689999999999995 445666789999999999998887777644 35777777773   4478888888899999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeee--------------ecceeeEEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVF--------------EGHTHYVMQIV  149 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~--------------~~~~~~v~~~~  149 (229)
                      |++.+...+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++....+..++              ..|.+.+..++
T Consensus       174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            99999999999999999999999998875 6799999999999998764444433              34667788999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653         150 INPKDNNTFASASLDRTVKVWQLGSAS  176 (229)
Q Consensus       150 ~~~~~~~~l~s~~~d~~i~~wd~~~~~  176 (229)
                      |.. ++.++++.+.|.++++|+...++
T Consensus       254 ~tS-d~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  254 WTS-DARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ecc-cchhhhhccCccceEEeecccCc
Confidence            986 78999999999999999987664

>KOG1408|consensus

Probab=99.89  E-value=7.1e-22  Score=163.47  Aligned_cols=216  Identities=18%  Similarity=0.342  Sum_probs=170.0

Q ss_pred             cccCCCceEEEEEccC-----------CCeEEEEEecCeEEEEEcCCCCeEEEEE-------------------------
Q psy4653          11 LTARSDRVKCCDLHPT-----------EPWMLASLYNGHVHVWNHETNQNVKSFE-------------------------   54 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~-----------~~~l~~~~~dg~v~~wd~~~~~~~~~~~-------------------------   54 (229)
                      +--|+..|+.+..-|-           ...+.+++.|++|++||+..+..-..|.                         
T Consensus       365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~  444 (1080)
T KOG1408|consen  365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS  444 (1080)
T ss_pred             eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence            4457888888776551           1246777899999999998642111110                         


Q ss_pred             --e----------cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCC---CCEEEEEeC
Q psy4653          55 --V----------CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPT---QPFLLTSSD  119 (229)
Q Consensus        55 --~----------~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~---~~~~~s~~~  119 (229)
                        .          ....+++++.+|+|++||+|...|.++++++...+.+..+++|...|.|+.|+..   .++|++++.
T Consensus       445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence              0          0125899999999999999999999999999988877888999999999999964   357899999


Q ss_pred             CCcEEEEecCCceeeeeeeecceeeEEEEEE-------------------------------------------------
Q psy4653         120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVI-------------------------------------------------  150 (229)
Q Consensus       120 d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~-------------------------------------------------  150 (229)
                      |+.|-++|..++..+.+.+.+|...|+.+.|                                                 
T Consensus       525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V  604 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV  604 (1080)
T ss_pred             CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence            9999999998876666666666665655544                                                 


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCCCCceEEEec---CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .| +.+++++++.|+.|++||+.+++..+.+++   |++..-.+..  .+.+.||++...|+++.++|+.+++|+.++.+
T Consensus       605 dp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l--DPSgiY~atScsdktl~~~Df~sgEcvA~m~G  681 (1080)
T KOG1408|consen  605 DP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL--DPSGIYLATSCSDKTLCFVDFVSGECVAQMTG  681 (1080)
T ss_pred             CC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE--CCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence            33 346899999999999999999998888865   4455555555  45667999999999999999999999999887


Q ss_pred             CC
Q psy4653         228 GI  229 (229)
Q Consensus       228 ~~  229 (229)
                      |+
T Consensus       682 Hs  683 (1080)
T KOG1408|consen  682 HS  683 (1080)
T ss_pred             cc
Confidence            74

>KOG1036|consensus

Probab=99.88  E-value=1.7e-20  Score=141.58  Aligned_cols=192  Identities=20%  Similarity=0.339  Sum_probs=151.9

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      .+.|.++.|+|.+..|+++++||++++||.........+. ++.++.+.+|.+ ...+++|+.||.|+.+|++++.. ..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQ   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-ee
Confidence            4789999999999999999999999999999875555554 677999999996 66889999999999999998765 44


Q ss_pred             eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653          95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      +..|.+.|+|+.+.+....+++||.|++|++||.+.. .....+. ....|.++...   ++.|+.|+.|..+.+||++.
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEccc
Confidence            5679999999999999999999999999999998753 2222332 23367777764   56888899999999999987


Q ss_pred             CCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         175 ASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       175 ~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      -...++.+.-  .-.+.|+++.++..+  .+.+|-||.|.+=.+
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~sSieGRVavE~~  206 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEG--YVVSSIEGRVAVEYF  206 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCc--eEEEeecceEEEEcc
Confidence            6544433221  235789998875444  677899999876444

>KOG0321|consensus

Probab=99.88  E-value=3.3e-21  Score=157.47  Aligned_cols=211  Identities=18%  Similarity=0.325  Sum_probs=152.5

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE--EEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS--FEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFN   85 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd   85 (229)
                      +....|...|..+.|-|-...|++.+.|.+++.||+++++.+..  +.+|...+.+++|.|.+ ..+++|+.||.|.|||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            45678999999999999767788889999999999999988776  88899999999999965 5799999999999999


Q ss_pred             CCCcc---------------------------eEEEeccCCCceeE---EEEcCCCCEEEEEeC-CCcEEEEecCCceee
Q psy4653          86 YNTLE---------------------------RFHSFEAHSDYVRC---VAVHPTQPFLLTSSD-DMLIKLWNWEKAWAC  134 (229)
Q Consensus        86 ~~~~~---------------------------~~~~~~~h~~~i~~---v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~  134 (229)
                      .....                           .++..+++...|.+   +.+..|...|++++. |+.|++||++++...
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            75321                           11122334444555   566677778888777 999999999865322


Q ss_pred             eee-------eecc---eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC-----------------------------
Q psy4653         135 QQV-------FEGH---THYVMQIVINPKDNNTFASASLDRTVKVWQLGSA-----------------------------  175 (229)
Q Consensus       135 ~~~-------~~~~---~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----------------------------  175 (229)
                      .+.       +..|   ...+..+.... .|.+|...+.|+.|.+|++.+.                             
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            111       1112   23345555554 3555555566888888877541                             


Q ss_pred             ------------------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         176 ------------------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       176 ------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                                        .+...+.+|...|.+++|.++... -++|+++|-.++||++.++-+
T Consensus       333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t-~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT-PVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC-CceeeccCcceEEEeccCchh
Confidence                              111234578888999999887665 467789999999999976543

>KOG0294|consensus

Probab=99.88  E-value=1.6e-20  Score=142.12  Aligned_cols=193  Identities=18%  Similarity=0.349  Sum_probs=150.5

Q ss_pred             EEEEEecCeEEEEEcCCC------------CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          30 MLASLYNGHVHVWNHETN------------QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        30 l~~~~~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      +++|++...|.=+++.-.            .++..|..|..++++++.+  +.++|+|+.|-+|.|||....+.+..+-.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence            556666555555554321            1244566788889988776  68999999999999999999888888889


Q ss_pred             CCCceeEEEEcCCCC--EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653          98 HSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus        98 h~~~i~~v~~~~~~~--~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                      |.+.|+++.|.+.-.  .|++|+.||.|.+|+.. .+.+...+.+|.+.|+.++++| .+.+.++-+.|+.+++|++-.+
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcC
Confidence            999999999998765  89999999999999985 4678888999999999999999 6899999999999999998665


Q ss_pred             CceEEEec---------------------------------------CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         176 SPNFTLEG---------------------------------------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       176 ~~~~~~~~---------------------------------------h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      +.-+.++-                                       ....+.|+-|   .++..|++|.+|+.|++||.
T Consensus       160 r~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~---l~~~~L~vG~d~~~i~~~D~  236 (362)
T KOG0294|consen  160 RVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF---LDGSELLVGGDNEWISLKDT  236 (362)
T ss_pred             ccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee---cCCceEEEecCCceEEEecc
Confidence            33221110                                       0011233333   24568999999999999999


Q ss_pred             CCCeEEEeeccCC
Q psy4653         217 QNKTCVQTLESGI  229 (229)
Q Consensus       217 ~~~~~~~~~~~~~  229 (229)
                      ....+...+.+|+
T Consensus       237 ds~~~~~~~~AH~  249 (362)
T KOG0294|consen  237 DSDTPLTEFLAHE  249 (362)
T ss_pred             CCCccceeeecch
Confidence            9888888887764

>KOG2048|consensus

Probab=99.88  E-value=4.2e-20  Score=151.86  Aligned_cols=207  Identities=14%  Similarity=0.248  Sum_probs=164.9

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe-EEEEEec-CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN-VKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ..+|.|++|+.+.+.||++-.||.|-+|+++.+=. ...+.+. +..+-+++|. ++..|.+.+.+|+|.-||+.+.+..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence            45899999999999999999999999999988533 3344443 4579999999 4556778889999999999999999


Q ss_pred             EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      ..+....+.|.+++.+|.+..++.|+.||.+..++...... ..+.+....+.+.++.|+| ++..+++|+.||.|++||
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWD  182 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEE
Confidence            99888889999999999999999999999777777654422 2344555678899999998 678899999999999999


Q ss_pred             CCCCCceEEEe----c----CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         172 LGSASPNFTLE----G----HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       172 ~~~~~~~~~~~----~----h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ...+..++...    +    ...-|.++.|-..   ..|++|...|+|++||...+..++...
T Consensus       183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~  242 (691)
T KOG2048|consen  183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHS  242 (691)
T ss_pred             cCCCceEEEeeecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhh
Confidence            98887665221    1    1112456666532   258999999999999999887765443

>KOG0646|consensus

Probab=99.87  E-value=1.1e-20  Score=149.45  Aligned_cols=186  Identities=17%  Similarity=0.223  Sum_probs=154.8

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC---------CCCeEEEEEecCcCeEEEEEcCCC--CEEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE---------TNQNVKSFEVCDLPVRAAKFVPRK--NWIVTG   75 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~---------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg   75 (229)
                      +...+.+|+..|+|+.|+-|+.++++|+.||.|.+|.+-         +.++...|..|..+|+.+...+.|  -.|+|+
T Consensus       115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta  194 (476)
T KOG0646|consen  115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA  194 (476)
T ss_pred             HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence            445678999999999999999999999999999999974         235567778888899999887653  479999


Q ss_pred             eCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce---------------eeeeeeec
Q psy4653          76 SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW---------------ACQQVFEG  140 (229)
Q Consensus        76 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~---------------~~~~~~~~  140 (229)
                      |.|..+++||+..+..+..+. ....+.+++++|.+..+..|+.+|.|.+.++....               .....+.|
T Consensus       195 S~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG  273 (476)
T ss_pred             cCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence            999999999999998777664 34578999999999999999999999988864322               11245678


Q ss_pred             cee--eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEE
Q psy4653         141 HTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       141 ~~~--~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  194 (229)
                      |.+  +|++++++. |+.+|++|+.||.+++||..+..+++++....++|+.+.+.
T Consensus       274 h~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~  328 (476)
T KOG0646|consen  274 HENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQIN  328 (476)
T ss_pred             ccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEee
Confidence            887  899999996 89999999999999999999888777776455677777763

>KOG0303|consensus

Probab=99.87  E-value=2.4e-20  Score=144.97  Aligned_cols=206  Identities=17%  Similarity=0.277  Sum_probs=155.2

Q ss_pred             hcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCC-------CeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCe
Q psy4653          10 KLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETN-------QNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQ   80 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~   80 (229)
                      .+.||+.+|..++|.|-+ ..+|+|+.|.+|.+|.+-.+       +.+..+.+|...|-.+.|+|. .|.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            467999999999999965 45666789999999998654       345667788889999999997 468999999999


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE-EEEEEcCCCCCEEE
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-MQIVINPKDNNTFA  159 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~  159 (229)
                      |.+||+.+++.+-.+. |.+.|.++.|+.+|.++++.+.|++|||||.+.+...... .+|.+.- ..+.|- .++.++-
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl-~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFL-ASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEe-ccCceee
Confidence            9999999999887877 9999999999999999999999999999999877544333 5665442 333343 3566655


Q ss_pred             EEE---CCCcEEEEeCCCCC-c--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         160 SAS---LDRTVKVWQLGSAS-P--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       160 s~~---~d~~i~~wd~~~~~-~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      ||-   .++.+-+||...-+ +  ..++.. +.+|. +=|+..+.+-+-++|-.|+.||.|.+.+..
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl-~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVL-LPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEecc-CCceE-EeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            553   67889999976533 3  223332 23343 344434444344567789999999998765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=7e-19  Score=139.18  Aligned_cols=210  Identities=15%  Similarity=0.118  Sum_probs=150.0

Q ss_pred             cccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC-eEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM-QVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-~i~iwd~~~   88 (229)
                      +..+. .+..+.|+|+++.+++++ .++.+.+||+.+.+.+..+... ..+.++.|+|+++++++++.++ .+.+||.++
T Consensus        69 ~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        69 LPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             ccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence            44333 356789999999887764 6899999999998777666532 3468899999999999988776 466779888


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecce-------eeEEEEEEcCCCCCE-EE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHT-------HYVMQIVINPKDNNT-FA  159 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~-l~  159 (229)
                      ++.+..... .....++.|+|+++.++ ++..++.|++||++...... .+..+.       .....+.++| ++.+ ++
T Consensus       147 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~  223 (300)
T TIGR03866       147 YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKLTK-DGKTAFV  223 (300)
T ss_pred             CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEECC-CCCEEEE
Confidence            766554432 23457899999999875 44569999999998763322 221111       1124577887 4555 44


Q ss_pred             EEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEe-eCCCeEEEEECCCCeEEEeeccC
Q psy4653         160 SASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISG-ADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +.+.++++.+||+++.+.+..+. +...+.+++|.+  ++.+|+++ ..+++|++||+++++++.+++.+
T Consensus       224 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~--~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       224 ALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP--DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC--CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            45567789999998777655443 334678888854  55567765 56999999999999999888754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048|consensus

Probab=99.87  E-value=1.2e-19  Score=149.30  Aligned_cols=204  Identities=14%  Similarity=0.183  Sum_probs=167.9

Q ss_pred             cccCC-CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          11 LTARS-DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        11 ~~~~~-~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      +.|++ ..|.+++|. ++..|++.+.+|.|.-||+.+.+.+..+.....++.+++.+|.+..++.|+.||.+..++...+
T Consensus        64 i~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~  142 (691)
T KOG2048|consen   64 IHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD  142 (691)
T ss_pred             EecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence            34444 479999999 5556999999999999999999999999888889999999999999999999998888888876


Q ss_pred             ceE--EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee-------eecceeeEEEEEEcCCCCCEEEE
Q psy4653          90 ERF--HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV-------FEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        90 ~~~--~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      +..  +.+...+++|.+++|+|++..+++|+.||.|++||...+......       -++...-|..+.+-.  ...+++
T Consensus       143 ~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~s  220 (691)
T KOG2048|consen  143 KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIAS  220 (691)
T ss_pred             eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEE
Confidence            644  335556789999999999999999999999999999776443311       111223456666652  468999


Q ss_pred             EECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      |..-|+|.+||...+..+.....|.+.|.|++...  ++.++.+++.|++|..+...+.
T Consensus       221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~--~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD--NEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC--CCCeEEEccCCCceEEEEecCC
Confidence            99999999999999999999999999999999843  4458999999999988877655

>KOG0650|consensus

Probab=99.87  E-value=1.2e-20  Score=153.39  Aligned_cols=202  Identities=19%  Similarity=0.414  Sum_probs=151.6

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCE--EEEEeCC--------
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW--IVTGSDD--------   78 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~sg~~d--------   78 (229)
                      .-|.||++.|.|++.+|.|.+|++|+.||+|+||.+.||.+++++... ..|.|+.|+|.++.  ||++-..        
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            348899999999999999999999999999999999999999987643 47899999887652  3333211        


Q ss_pred             ------------------------CeEEEEECCC------c--------ceEEEe-------------------------
Q psy4653          79 ------------------------MQVCVFNYNT------L--------ERFHSF-------------------------   95 (229)
Q Consensus        79 ------------------------~~i~iwd~~~------~--------~~~~~~-------------------------   95 (229)
                                              +.+..|.-..      +        +.+..+                         
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence                                    1222332110      0        001111                         


Q ss_pred             ----------ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          96 ----------EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        96 ----------~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                                .-..+.|.++.|||..++|++++. ..|++||+........+..+ ...+..++++| .|.-++.|+.|+
T Consensus       553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-~kwiS~msihp-~GDnli~gs~d~  629 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-SKWISSMSIHP-NGDNLILGSYDK  629 (733)
T ss_pred             cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-CeeeeeeeecC-CCCeEEEecCCC
Confidence                      111234789999999999988875 68999999765444444443 45688899998 577778899999


Q ss_pred             cEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         166 TVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       166 ~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      .+..+|+.- .++.++++.|...+.+++|+.  .-+++++|+.||++.+|..
T Consensus       630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~--ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK--RYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeEEEEcccCcchhHHhhhhhhhhhhhhhcc--ccceeeeecCCCcEEEEee
Confidence            999999964 478888999999999999953  5568999999999999874

>KOG0290|consensus

Probab=99.86  E-value=1.5e-20  Score=141.13  Aligned_cols=205  Identities=18%  Similarity=0.243  Sum_probs=161.2

Q ss_pred             ccCCCceEEEEEccCC----CeEEEEEecCeEEEEEcCC--CCe--EEEE-----EecCcCeEEEEEcC-CCCEEEEEeC
Q psy4653          12 TARSDRVKCCDLHPTE----PWMLASLYNGHVHVWNHET--NQN--VKSF-----EVCDLPVRAAKFVP-RKNWIVTGSD   77 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~----~~l~~~~~dg~v~~wd~~~--~~~--~~~~-----~~~~~~v~~~~~~~-~~~~l~sg~~   77 (229)
                      ..|.-+++.+-|.|+.    +.|+|++ +..+++|.+..  .+.  ...+     ..+..++++..|+. +.++|.+.|-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            3588899999999987    4566665 46899999874  221  1111     12345789999986 5789999999


Q ss_pred             CCeEEEEECCCcce---EEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecc--eeeEEEEEEc
Q psy4653          78 DMQVCVFNYNTLER---FHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGH--THYVMQIVIN  151 (229)
Q Consensus        78 d~~i~iwd~~~~~~---~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~--~~~v~~~~~~  151 (229)
                      |-+..|||++++..   -.++-+|.++|..++|...+. .|++.|.||+||+||++....-..+++..  ..+...+.|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            99999999998633   345678999999999998665 68899999999999998764433333332  4567889999


Q ss_pred             CCCCCEEEEEECC-CcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         152 PKDNNTFASASLD-RTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       152 ~~~~~~l~s~~~d-~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +.+.+++|+-..| ..|.+.|++.. .++.++++|.+.|+.++|.+.. ...|+||++|..+.|||+.+
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC-CceeeecCCcceEEEEeccc
Confidence            9999999987655 48999999864 6888999999999999997654 45899999999999999875

>KOG0639|consensus

Probab=99.86  E-value=8.4e-21  Score=151.67  Aligned_cols=216  Identities=18%  Similarity=0.330  Sum_probs=164.7

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC---CeEEEEEe--cCcCeEEEEEcCCCCEEEEEeC
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN---QNVKSFEV--CDLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      +.....+++ .|..=|.++.++...+++++|+ .|.|++||+...   .++..+..  .+..++++...|+|+.|++|+.
T Consensus       408 rharq~~tL-~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe  485 (705)
T KOG0639|consen  408 RHARQINTL-AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE  485 (705)
T ss_pred             chHHhhhhh-ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc
Confidence            333333434 4877788888998888877776 789999999753   22333322  2457999999999999999999


Q ss_pred             CCeEEEEECCCcce-E-EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          78 DMQVCVFNYNTLER-F-HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        78 d~~i~iwd~~~~~~-~-~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      -.++.|||+..-.. + ..+........+++.+||.+..+++..||.|.|||+.+. ...+.|.||.....++.+++ ++
T Consensus       486 astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~-dG  563 (705)
T KOG0639|consen  486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISK-DG  563 (705)
T ss_pred             cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecC-CC
Confidence            88999999975432 2 223333345678999999999999999999999999865 55677899999999999987 79


Q ss_pred             CEEEEEECCCcEEEEeCCCCCce----------------------------------------EEEecCCCceEEEEEEe
Q psy4653         156 NTFASASLDRTVKVWQLGSASPN----------------------------------------FTLEGHEKGVNCVDYYH  195 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~----------------------------------------~~~~~h~~~v~~~~~~~  195 (229)
                      ..|.||+.|.++|.||++++..+                                        +.+..|+.-|.++.|.+
T Consensus       564 tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~  643 (705)
T KOG0639|consen  564 TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY  643 (705)
T ss_pred             ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc
Confidence            99999999999999999874321                                        13334666678888854


Q ss_pred             CCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         196 GGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       196 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                        .++.+++.+.|.-+..|..-.|..|..
T Consensus       644 --cGkwfvStGkDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  644 --CGKWFVSTGKDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             --cCceeeecCchhhhhhccCccccceee
Confidence              456888999999999998877766543

>KOG2106|consensus

Probab=99.86  E-value=4.3e-19  Score=141.90  Aligned_cols=157  Identities=18%  Similarity=0.250  Sum_probs=131.3

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      ....||.++...++.||+.+.+++++.|++|++|+  ..+++... ...+++.|+.|.|.| .++.|+..|...+.|.++
T Consensus       362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~  437 (626)
T KOG2106|consen  362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTET  437 (626)
T ss_pred             EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence            34568999999999999999999999999999999  55555543 345689999999999 999999999999999998


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ...+..-.. .+.+++++|+|+|.+|+.|+.|+.|+||.+..... ..++-..+..+|+.+.|++ |+.++.+.+-|-.|
T Consensus       438 ~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~ei  515 (626)
T KOG2106|consen  438 QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEI  515 (626)
T ss_pred             ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEE
Confidence            666554444 78999999999999999999999999999876543 3444445558899999987 67888888888888


Q ss_pred             EEEe
Q psy4653         168 KVWQ  171 (229)
Q Consensus       168 ~~wd  171 (229)
                      ..|.
T Consensus       516 LyW~  519 (626)
T KOG2106|consen  516 LYWK  519 (626)
T ss_pred             EEEc
Confidence            8884

>KOG1310|consensus

Probab=99.86  E-value=1.1e-20  Score=152.52  Aligned_cols=172  Identities=19%  Similarity=0.329  Sum_probs=142.2

Q ss_pred             CccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-EecCcCeEEEEEcCC--CCEEEEEeCC
Q psy4653           2 PLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-EVCDLPVRAAKFVPR--KNWIVTGSDD   78 (229)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~sg~~d   78 (229)
                      .+|+...+.+.||+.+|+|++|+.+|.+|++|+.|-.+.|||....|.+..+ ..|...|.++.|.|.  .+.+++|..|
T Consensus        37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            4678888899999999999999999999999999999999999988876655 467788999999995  4589999999


Q ss_pred             CeEEEEECCC----------cceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecc------
Q psy4653          79 MQVCVFNYNT----------LERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGH------  141 (229)
Q Consensus        79 ~~i~iwd~~~----------~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~------  141 (229)
                      ..|+++|+..          .+.++.+..|..+|.-++..|+++ .|.+++.||+|+.+|+++...+......+      
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            9999999974          223566788999999999999995 68899999999999998753332221111      


Q ss_pred             ---eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653         142 ---THYVMQIVINPKDNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus       142 ---~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  173 (229)
                         --...++.++|..+.+|+.|+.|-..++||.+
T Consensus       197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             chhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence               11235778899999999999999999999954

>KOG2106|consensus

Probab=99.86  E-value=1.7e-19  Score=144.20  Aligned_cols=215  Identities=20%  Similarity=0.387  Sum_probs=169.3

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecC--------eEEEEEcCCCCeEEEEEecCcCeEEEEEcCC--CCEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNG--------HVHVWNHETNQNVKSFEVCDLPVRAAKFVPR--KNWIVTG   75 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg--------~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg   75 (229)
                      .-++.|.||++.|.|++.||+.-.+++|-..|        +|++||..+-..+..+...+..|.|++|++.  |++|+.-
T Consensus        95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence            35788999999999999999987777765444        6999999887777887777788999999984  5666555


Q ss_pred             eCC--CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee--eeeeecce-eeEEEEEE
Q psy4653          76 SDD--MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC--QQVFEGHT-HYVMQIVI  150 (229)
Q Consensus        76 ~~d--~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~--~~~~~~~~-~~v~~~~~  150 (229)
                      ...  --+.+||.+.+......+..++.|....|+|.++.++.....+.+..|+++.+...  ..+|+++. ..|.++.|
T Consensus       175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F  254 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF  254 (626)
T ss_pred             cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence            433  35889999887777777778888999999999998877777899999999876443  33455543 56889999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .+  +.-.+||..+|.|.+|+.++....+....|..+|.++....+  + .|+||+.|+.|..|| .+-+.++..+
T Consensus       255 ~e--ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~--G-tllSGgKDRki~~Wd-~~y~k~r~~e  324 (626)
T KOG2106|consen  255 LE--NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD--G-TLLSGGKDRKIILWD-DNYRKLRETE  324 (626)
T ss_pred             cC--CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC--c-cEeecCccceEEecc-cccccccccc
Confidence            86  357789999999999999887777777799999999887543  3 467799999999999 4334444443

>KOG1007|consensus

Probab=99.85  E-value=9.4e-20  Score=136.73  Aligned_cols=209  Identities=16%  Similarity=0.272  Sum_probs=163.3

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEec--------CeEEEEEcCCCCeE---------EEEE-ecCcCeEEEEEcCC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYN--------GHVHVWNHETNQNV---------KSFE-VCDLPVRAAKFVPR   68 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--------g~v~~wd~~~~~~~---------~~~~-~~~~~v~~~~~~~~   68 (229)
                      ..+.|..|..+|..++-+|..+.+++++..        -..-||.+......         ..+. .+-..+.|+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            345577788899999999998888887654        24678998653322         1222 12247899999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCcce-EEEec-----cCCCceeEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeec
Q psy4653          69 KNWIVTGSDDMQVCVFNYNTLER-FHSFE-----AHSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEG  140 (229)
Q Consensus        69 ~~~l~sg~~d~~i~iwd~~~~~~-~~~~~-----~h~~~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~  140 (229)
                      +..|++-. |..|.+|+.+.+.. ...+.     .+....++=+|+|  ++..+++. .|++++.||++...+...+-..
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence            98888764 88999999876554 33322     2455677889988  45566554 5899999999987666777778


Q ss_pred             ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       141 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      |...|..+.|+|....+|+||+.|+.|++||.+.. .+++++.+|..-|.++.|.+.-+ ++|+||+.|..|.+|-..+
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccc
Confidence            98999999999988889999999999999998754 58999999999999999976544 5899999999999998754

>KOG0322|consensus

Probab=99.85  E-value=1.5e-20  Score=139.36  Aligned_cols=201  Identities=19%  Similarity=0.339  Sum_probs=149.3

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      +.+|...|+|+.|..++. |++|..-|.|++|++.+......++ .+...++.+...|+ ..|.+-+.|+.+.+|++.-+
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s   87 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS   87 (323)
T ss_pred             eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence            448999999999997776 9999999999999999998888877 45567888888876 56778889999999987642


Q ss_pred             ceE--E-------------------------Eec--------------------------cCCCceeEEEEcCC-CC--E
Q psy4653          90 ERF--H-------------------------SFE--------------------------AHSDYVRCVAVHPT-QP--F  113 (229)
Q Consensus        90 ~~~--~-------------------------~~~--------------------------~h~~~i~~v~~~~~-~~--~  113 (229)
                      .-+  +                         .+.                          +-.+.+.|..+..+ +.  +
T Consensus        88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l  167 (323)
T KOG0322|consen   88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL  167 (323)
T ss_pred             ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence            100  0                         000                          00123455554332 22  4


Q ss_pred             EEEEeCCCcEEEEecCCceeee---------eeeecceeeEE--------------------------------------
Q psy4653         114 LLTSSDDMLIKLWNWEKAWACQ---------QVFEGHTHYVM--------------------------------------  146 (229)
Q Consensus       114 ~~s~~~d~~v~lwd~~~~~~~~---------~~~~~~~~~v~--------------------------------------  146 (229)
                      ++.|-++|.|.+||+..+.+..         .....|..++.                                      
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence            5788889999999987642211         11122333333                                      


Q ss_pred             --------EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         147 --------QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       147 --------~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                              .+.+.| |++++||+++|++||+|..++..++..+..|++++++++|.+  +.+++|+||.|+.|.+|++
T Consensus       248 ~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp--d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP--DCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC--CCchhhhccCCceEEeeec
Confidence                    334444 678999999999999999999999999999999999999954  5568999999999999986

>KOG1034|consensus

Probab=99.85  E-value=1e-20  Score=143.94  Aligned_cols=205  Identities=19%  Similarity=0.249  Sum_probs=156.2

Q ss_pred             CCCceEEEEEccC----CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q psy4653          14 RSDRVKCCDLHPT----EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        14 ~~~~v~~~~~~p~----~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~   88 (229)
                      |.....-++|.-+    .++|++|+.-|.|++.|+.+++....+.+|..+|..+.|.|. .++++++|.|-+|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            5555667777543    678999999999999999999999999999999999999996 47999999999999999999


Q ss_pred             cceEEEe---ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeee------------------------e
Q psy4653          89 LERFHSF---EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQV------------------------F  138 (229)
Q Consensus        89 ~~~~~~~---~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~------------------------~  138 (229)
                      ..++..+   .+|.+.|.+++|++++.++++++-|.++++|++....-   ++..                        -
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            9887664   67999999999999999999999999999999862110   1111                        0


Q ss_pred             ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC-CCc-------------eEEEecCCCceEEEEEEeCCCcCEEEE
Q psy4653         139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS-ASP-------------NFTLEGHEKGVNCVDYYHGGDKPYLIS  204 (229)
Q Consensus       139 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~-------------~~~~~~h~~~v~~~~~~~~~~~~~l~s  204 (229)
                      .-|..+|-++.|-   +++++|-|.++.|..|.... ++.             +.+++-..-.+.-+.|..+.-+..|+.
T Consensus       248 diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  248 DIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             ccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence            1233333344332   46899999999999998732 111             112222223344566655566678999


Q ss_pred             eeCCCeEEEEECCCCeE
Q psy4653         205 GADDRLVKIWDYQNKTC  221 (229)
Q Consensus       205 ~s~d~~i~iwd~~~~~~  221 (229)
                      |...|+|.+||+++.++
T Consensus       325 gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             ccCCCcEEEEECCCCCC
Confidence            99999999999987654

>KOG4328|consensus

Probab=99.85  E-value=5.5e-20  Score=145.24  Aligned_cols=215  Identities=18%  Similarity=0.269  Sum_probs=165.0

Q ss_pred             hhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ...+..|+.+|.++.|+|.. ..+++.+.||+|++=|++.......+..  ....+..+.|+.+...++.|..=|...+|
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence            34467899999999999965 5788889999999999998755444443  34457888888888878888777899999


Q ss_pred             ECCCcce-EEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeee---eeeecceeeEEEEEEcCCCCCEEE
Q psy4653          85 NYNTLER-FHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQ---QVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        85 d~~~~~~-~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      |.++.+. +..+.-|...|+.|+++|..+ +++|+|.|++++|||+++.....   .....|...|..+.|+|.++. |+
T Consensus       307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~  385 (498)
T KOG4328|consen  307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LL  385 (498)
T ss_pred             EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eE
Confidence            9987654 666778989999999999887 57899999999999997643221   223468889999999996554 99


Q ss_pred             EEECCCcEEEEeCC----CCCceEEEec-CC--Cce--EEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         160 SASLDRTVKVWQLG----SASPNFTLEG-HE--KGV--NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       160 s~~~d~~i~~wd~~----~~~~~~~~~~-h~--~~v--~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      |-+.|.+||+||..    .-.++.++.- +.  ..+  ....|  .++..+++.|-.-..|-|+|-+.++.+..+
T Consensus       386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W--~P~~~li~vg~~~r~IDv~~~~~~q~v~el  458 (498)
T KOG4328|consen  386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAW--DPDYNLIVVGRYPRPIDVFDGNGGQMVCEL  458 (498)
T ss_pred             eeccCCceEEeecccccccCCccceeeccCcccccccchhhee--CCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence            99999999999983    3344444431 11  112  23344  557779999999999999999999866554

>KOG1539|consensus

Probab=99.85  E-value=1e-19  Score=152.68  Aligned_cols=196  Identities=15%  Similarity=0.235  Sum_probs=168.7

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE---EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF---EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ..+.|++.++-|++.+.|...|.|-++|+++|-....|   +.|+.+|+.++...-++.+++++.+|.+..||.+....+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            57899999999999999999999999999999888888   478899999999988999999999999999999877665


Q ss_pred             EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      ..+. -..++.++.++.....++.+..|-+|+++|.... ++.+.|.||...++...|+| ++..+++++.|++||+||+
T Consensus       529 ~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  529 KSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEec
Confidence            5554 3457889999999999999999999999998765 56777899999999999998 7999999999999999999


Q ss_pred             CCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-CeEEEEECC
Q psy4653         173 GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-RLVKIWDYQ  217 (229)
Q Consensus       173 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-~~i~iwd~~  217 (229)
                      .++..+-.+.- ..+..++.|+  +++.+|||...| .-|++|.=+
T Consensus       606 pt~~lID~~~v-d~~~~sls~S--PngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  606 PTGTLIDGLLV-DSPCTSLSFS--PNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             cCcceeeeEec-CCcceeeEEC--CCCCEEEEEEecCceEEEEEch
Confidence            98876654433 3456667774  456699999988 779999743

>KOG1188|consensus

Probab=99.85  E-value=7.2e-20  Score=139.93  Aligned_cols=198  Identities=17%  Similarity=0.280  Sum_probs=161.0

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCcceE--EEeccCC-Cce
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVFNYNTLERF--HSFEAHS-DYV  102 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~h~-~~i  102 (229)
                      ..++++...|.|++||..+++.+..|+.+...+..+.|..  ..+.+.+++.||.|++||++.....  ..+.++. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3488889999999999999999999999888888999987  5678999999999999999875543  3445554 567


Q ss_pred             eEEEEcCCCCEEEEEeC----CCcEEEEecCCcee-eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC--
Q psy4653         103 RCVAVHPTQPFLLTSSD----DMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA--  175 (229)
Q Consensus       103 ~~v~~~~~~~~~~s~~~----d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--  175 (229)
                      .|++....+.++++|..    |-.|.+||++...+ +....+.|..-|+++.|+|.++++|+|||.||.+.++|++..  
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            88888878888888743    56899999998776 556678899999999999999999999999999999999754  


Q ss_pred             -CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         176 -SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       176 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                       ..+.....|...|.++.|.... ...|.+-+...+..+|+.+-+.+.-.++
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~-ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKK-YKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCC-cceEEEEEccCceeEEEccCCChhhccc
Confidence             2344445677789999996433 2358888999999999998887654443

>KOG1034|consensus

Probab=99.85  E-value=9.6e-20  Score=138.72  Aligned_cols=199  Identities=21%  Similarity=0.462  Sum_probs=159.1

Q ss_pred             ccCCCceEEEEEcc----CCCeEEEEEecCeEEEEEcCCCCeEEEEEe-----cCcCeEEEEEcCC---CC-EEEEEeCC
Q psy4653          12 TARSDRVKCCDLHP----TEPWMLASLYNGHVHVWNHETNQNVKSFEV-----CDLPVRAAKFVPR---KN-WIVTGSDD   78 (229)
Q Consensus        12 ~~~~~~v~~~~~~p----~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-----~~~~v~~~~~~~~---~~-~l~sg~~d   78 (229)
                      -+|+.++..++|++    +.+.++++...+.+.++.....--++.++.     +++....++|.-+   ++ +||+|+.-
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence            37889999999994    456788888889999999876443333332     3445777777654   23 78899999


Q ss_pred             CeEEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeee---ecceeeEEEEEEcCCC
Q psy4653          79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVF---EGHTHYVMQIVINPKD  154 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~  154 (229)
                      |.|+|.|+..++....+.+|...|+.+.++|+.+ +++++|.|.+||+|++++. .+..+|   +||.+.|.++.|++ +
T Consensus       115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfGG~egHrdeVLSvD~~~-~  192 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFGGVEGHRDEVLSVDFSL-D  192 (385)
T ss_pred             eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEecccccccCcEEEEEEcC-C
Confidence            9999999999999999999999999999999875 6789999999999999876 555554   67999999999998 6


Q ss_pred             CCEEEEEECCCcEEEEeCCCCC---------------------------ceE-EEecCCCceEEEEEEeCCCcCEEEEee
Q psy4653         155 NNTFASASLDRTVKVWQLGSAS---------------------------PNF-TLEGHEKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~~~---------------------------~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                      +..|+|++.|..+++|++...+                           +.+ +-.-|...|.|+.|.    +.++++-|
T Consensus       193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~----gd~ilSks  268 (385)
T KOG1034|consen  193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF----GDFILSKS  268 (385)
T ss_pred             CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH----hhheeecc
Confidence            8899999999999999987310                           111 223477778888773    35899999


Q ss_pred             CCCeEEEEEC
Q psy4653         207 DDRLVKIWDY  216 (229)
Q Consensus       207 ~d~~i~iwd~  216 (229)
                      -++.|..|..
T Consensus       269 cenaI~~w~p  278 (385)
T KOG1034|consen  269 CENAIVCWKP  278 (385)
T ss_pred             cCceEEEEec
Confidence            9999999988

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=4.3e-18  Score=134.65  Aligned_cols=209  Identities=12%  Similarity=0.102  Sum_probs=146.9

Q ss_pred             hhcccCCCceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEE-eCCCeEEEEEC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG-SDDMQVCVFNY   86 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~~i~iwd~   86 (229)
                      +.+.++ ..+.+++|+|++..++ +++.++.|.+||..+++....+..+. ....+.|+|+++.++++ ..++.+.+||+
T Consensus        25 ~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        25 RTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDI  102 (300)
T ss_pred             EEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            445544 3577899999999875 45678999999999988877665443 35678999999977554 56899999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC-cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE-EEEECC
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM-LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF-ASASLD  164 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~-~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d  164 (229)
                      .+.+.+..++.+ ..+.+++|+|++..+++++.++ .+.+||.+..........+  .....+.|+| ++..+ +++..+
T Consensus       103 ~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~~~~~~~  178 (300)
T TIGR03866       103 ETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTA-DGKELWVSSEIG  178 (300)
T ss_pred             CCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECC-CCCEEEEEcCCC
Confidence            987777666532 3467899999999998888765 4667898765333322222  2345678888 56666 455579


Q ss_pred             CcEEEEeCCCCCceEEEecCC-----Cc--eEEEEEEeCCCcCEE-EEeeCCCeEEEEECCCCeEEEee
Q psy4653         165 RTVKVWQLGSASPNFTLEGHE-----KG--VNCVDYYHGGDKPYL-ISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h~-----~~--v~~~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +.|++||+.+++.+..+..+.     ..  ...+.|.  ++++++ ++...++.|.+||.++++.+..+
T Consensus       179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s--~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~  245 (300)
T TIGR03866       179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT--KDGKTAFVALGPANRVAVVDAKTYEVLDYL  245 (300)
T ss_pred             CEEEEEEcCcceeeeeeeecccccccccCCccceEEC--CCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            999999999887665554321     11  2345564  445553 44456778999999998877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0649|consensus

Probab=99.84  E-value=3.5e-19  Score=130.86  Aligned_cols=202  Identities=18%  Similarity=0.330  Sum_probs=152.9

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCC----------CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN----------QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      +..|.+-+++|.+++|++|..+|.|-+..+++-          +.+-.++.|+.++..+.|.  +.+|++|+ ||.|+-|
T Consensus        10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            356888899999999999999999999998642          2233456788999999998  45666764 5999988


Q ss_pred             ECCCc------ceEEEecc--C-----CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653          85 NYNTL------ERFHSFEA--H-----SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        85 d~~~~------~~~~~~~~--h-----~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                      ..+-.      +++...+.  |     -..|+++.+.|...-++.++.|+.+..||++++ ...+.+.||+.++.++.-.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGR  165 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeec
Confidence            65422      22222221  2     235899999999888888889999999999987 6788899999999999875


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC----------CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE----------KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      . ....++||+.||++|+||.++++.+.+++...          ..+.+++.    +...|++|+ ...+.+|+++..++
T Consensus       166 ~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~----~edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  166 N-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV----NEDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             c-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec----cCceEEecC-CCceeEEeccCCCc
Confidence            4 35688899999999999999999888775421          12455554    233555444 46799999999888


Q ss_pred             EEeec
Q psy4653         222 VQTLE  226 (229)
Q Consensus       222 ~~~~~  226 (229)
                      .+++.
T Consensus       240 t~vfp  244 (325)
T KOG0649|consen  240 TCVFP  244 (325)
T ss_pred             eEEEe
Confidence            77764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=9.9e-18  Score=136.77  Aligned_cols=211  Identities=26%  Similarity=0.501  Sum_probs=171.6

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCV   83 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~i   83 (229)
                      .....+.+|...|.+++|+|++..+++++. |+.+++|+..+++.+..+..+...+.++.|+|++. .+++++.|+.|.+
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            344567889999999999999998888875 99999999999888888888888999999999988 5666599999999


Q ss_pred             EECCCcceEE-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          84 FNYNTLERFH-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        84 wd~~~~~~~~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ||...+..+. .+..|.... ...|+|++..+++++.|+.+++|++...........+|...+..+.++| ++..+++++
T Consensus       226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  303 (466)
T COG2319         226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGS  303 (466)
T ss_pred             EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEee
Confidence            9988777777 688888775 4489999988899999999999999765442233367888899999998 567777799


Q ss_pred             CCCcEEEEeCCCCCceEEEe--cCCCceEEEEEEeCCCcCEEEEe-eCCCeEEEEECCCCe
Q psy4653         163 LDRTVKVWQLGSASPNFTLE--GHEKGVNCVDYYHGGDKPYLISG-ADDRLVKIWDYQNKT  220 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~  220 (229)
                      .|+.+++||...........  .|...+..+.+ . .+...+..+ ..|+.+.+|+.....
T Consensus       304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCCcEEEEEcCCCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCc
Confidence            89999999988777665555  77777888888 5 332344444 688999999998765

>KOG0268|consensus

Probab=99.83  E-value=2.8e-20  Score=143.27  Aligned_cols=171  Identities=16%  Similarity=0.272  Sum_probs=138.8

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      .|....+++.==.+.|.++.|+|-...++++ +.|++|.++|++++.+++..... ..-..++|+|++-.+++|+.|..+
T Consensus       175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nl  253 (433)
T KOG0268|consen  175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNL  253 (433)
T ss_pred             ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccc
Confidence            3445556666456889999999987666655 58999999999999988876543 456789999988899999999999


Q ss_pred             EEEECCCc-ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee-ecceeeEEEEEEcCCCCCEEE
Q psy4653          82 CVFNYNTL-ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF-EGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        82 ~iwd~~~~-~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      ..+|.... .++..+++|...|..++|+|.|+-|++||.|++|+||....+.. ..++ ......|.++.|+- |..+++
T Consensus       254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-RdiYhtkRMq~V~~Vk~S~-Dskyi~  331 (433)
T KOG0268|consen  254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-RDIYHTKRMQHVFCVKYSM-DSKYII  331 (433)
T ss_pred             eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc-hhhhhHhhhheeeEEEEec-cccEEE
Confidence            99998754 46788899999999999999999999999999999999876532 2222 12234589999986 789999


Q ss_pred             EEECCCcEEEEeCCCCC
Q psy4653         160 SASLDRTVKVWQLGSAS  176 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~  176 (229)
                      |||.|+.||+|.....+
T Consensus       332 SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ecCCCcceeeeecchhh
Confidence            99999999999876544

>KOG4378|consensus

Probab=99.83  E-value=1e-18  Score=139.62  Aligned_cols=187  Identities=17%  Similarity=0.286  Sum_probs=158.2

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCC-EEEEEeCCCeEEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKN-WIVTGSDDMQVCVFN   85 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd   85 (229)
                      -+.+++|++.|.++.++-...++++++..|.|.|..+.++.....|... .+.|+-+.|+|..+ +|.+++.+|.+.+||
T Consensus       114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD  193 (673)
T KOG4378|consen  114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD  193 (673)
T ss_pred             hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence            4568899999999999999999999999999999999998877777655 35678999999876 678889999999999


Q ss_pred             CCCcceEEE-eccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          86 YNTLERFHS-FEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        86 ~~~~~~~~~-~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      ++.+.++.. .+.|..+...++|+|... +|++.+.|+.|.+||.........+..  ..+...++|.+ +|.+|+.|..
T Consensus       194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~-~G~~L~aG~s  270 (673)
T KOG4378|consen  194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSE-CGTYLCAGNS  270 (673)
T ss_pred             ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecC-CceEEEeecC
Confidence            998877655 467999999999999765 678889999999999976544333332  45688999997 7899999999


Q ss_pred             CCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCC
Q psy4653         164 DRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGG  197 (229)
Q Consensus       164 d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~  197 (229)
                      .|+|..||++.. .|+.++..|...|.+++|-+.+
T Consensus       271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999999864 5888999999999999997654

>KOG0321|consensus

Probab=99.83  E-value=2.9e-19  Score=146.23  Aligned_cols=196  Identities=19%  Similarity=0.303  Sum_probs=140.4

Q ss_pred             EEEccC---CCeEEEEEecCeEEEEEcCCCCe------EEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          21 CDLHPT---EPWMLASLYNGHVHVWNHETNQN------VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        21 ~~~~p~---~~~l~~~~~dg~v~~wd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      +.|++-   ...|+.+-.||.|.++|.+..+-      .+.+..|...|..+.|.|....|++++.|.+++.||+++.+.
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            566542   34666678999999999876432      345567888999999999777899999999999999998887


Q ss_pred             EEE--eccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCce--ee----eee--------------------eecce
Q psy4653          92 FHS--FEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAW--AC----QQV--------------------FEGHT  142 (229)
Q Consensus        92 ~~~--~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~--~~----~~~--------------------~~~~~  142 (229)
                      +..  +.+|...|.+++|.|..+ .|++|+.||.|.|||++-..  ..    ...                    ...+.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            665  889999999999999876 67899999999999985422  00    000                    01122


Q ss_pred             ----eeEEEEEEcCCCCCEEEEEEC-CCcEEEEeCCCCCceE------E--EecC---CCceEEEEEEeCCCcCEEEEee
Q psy4653         143 ----HYVMQIVINPKDNNTFASASL-DRTVKVWQLGSASPNF------T--LEGH---EKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       143 ----~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~------~--~~~h---~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                          +.|+.+.|  .|+..|||++. |+.|++||++......      .  +..|   ..++.++..  ...+++|++.+
T Consensus       215 ~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l--DssGt~L~AsC  290 (720)
T KOG0321|consen  215 NTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL--DSSGTYLFASC  290 (720)
T ss_pred             CceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe--cCCCCeEEEEe
Confidence                23444444  37789999886 9999999998653222      1  2223   123333333  34456777777


Q ss_pred             CCCeEEEEECCCCe
Q psy4653         207 DDRLVKIWDYQNKT  220 (229)
Q Consensus       207 ~d~~i~iwd~~~~~  220 (229)
                      .|+.|.+||+.+..
T Consensus       291 tD~sIy~ynm~s~s  304 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLS  304 (720)
T ss_pred             cCCcEEEEeccccC
Confidence            79999999997643

>KOG1539|consensus

Probab=99.82  E-value=9.8e-19  Score=146.90  Aligned_cols=199  Identities=20%  Similarity=0.344  Sum_probs=168.9

Q ss_pred             ceEEEEEccC--CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          17 RVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        17 ~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      .+.++ +||.  -+-++.|+..|.+++||+++++.+..|+.+...|+++.-+|--..++.|..+|+|.++++...+.+.+
T Consensus       161 ~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s  239 (910)
T KOG1539|consen  161 FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS  239 (910)
T ss_pred             ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence            36664 5665  25578899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653          95 FEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  173 (229)
                      |+...+.|+.++|.-||+ .+++|+..|.+.+||+++......+...|.+.+....+-| ....++|++.|..+++|-+.
T Consensus       240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEee
Confidence            986679999999999987 5677777899999999987666666667888888888887 46799999999999999765


Q ss_pred             CC----CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         174 SA----SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       174 ~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ++    ..++...||+++..|+.|+ ..++..+.+++.|++.+.+++..
T Consensus       319 ~~dg~pR~LR~R~GHs~Pp~~irfy-~~~g~~ilsa~~Drt~r~fs~~~  366 (910)
T KOG1539|consen  319 SGDGVPRLLRSRGGHSAPPSCIRFY-GSQGHFILSAKQDRTLRSFSVIS  366 (910)
T ss_pred             CCCCcchheeeccCCCCCchheeee-ccCcEEEEecccCcchhhhhhhH
Confidence            43    3345557899999999996 34566899999999999988754

>KOG1063|consensus

Probab=99.82  E-value=1.3e-18  Score=143.51  Aligned_cols=211  Identities=22%  Similarity=0.404  Sum_probs=144.2

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCC---eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC---------
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEP---WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN---------   70 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------   70 (229)
                      .+..+.-.+.||..+|+|+.|-|...   .+++|+.|+.|.+|.++....+..+........++++...-.         
T Consensus        42 ~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~  121 (764)
T KOG1063|consen   42 EKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADG  121 (764)
T ss_pred             ccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCc
Confidence            34456667899999999999999887   899999999999999984433332221111222222222111         


Q ss_pred             ---------------------------------------EEEEEeCCCeEEEEECCC--cceEEEeccCCCceeEEEEcC
Q psy4653          71 ---------------------------------------WIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHP  109 (229)
Q Consensus        71 ---------------------------------------~l~sg~~d~~i~iwd~~~--~~~~~~~~~h~~~i~~v~~~~  109 (229)
                                                             .++.|+.+..|.++.-..  .+.+..+.+|.+-|.+++|..
T Consensus       122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~  201 (764)
T KOG1063|consen  122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR  201 (764)
T ss_pred             eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence                                                   233344444444443221  134556789999999999986


Q ss_pred             CCC---EEEEEeCCCcEEEEecCCce--------------------eee----------eeeecceeeEEEEEEcCCCCC
Q psy4653         110 TQP---FLLTSSDDMLIKLWNWEKAW--------------------ACQ----------QVFEGHTHYVMQIVINPKDNN  156 (229)
Q Consensus       110 ~~~---~~~s~~~d~~v~lwd~~~~~--------------------~~~----------~~~~~~~~~v~~~~~~~~~~~  156 (229)
                      .+.   +++++|+|..||||.+....                    ...          .++.||...|+.+.|+| .+.
T Consensus       202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~  280 (764)
T KOG1063|consen  202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGL  280 (764)
T ss_pred             cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chh
Confidence            543   78899999999999864221                    011          22458999999999998 577


Q ss_pred             EEEEEECCCcEEEEeCCCCCc----------------------------------------------------eEEEecC
Q psy4653         157 TFASASLDRTVKVWQLGSASP----------------------------------------------------NFTLEGH  184 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~----------------------------------------------------~~~~~~h  184 (229)
                      .|+|++.|+++.+|.-....-                                                    ...+.||
T Consensus       281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH  360 (764)
T KOG1063|consen  281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH  360 (764)
T ss_pred             hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence            899999999999996543100                                                    0123478


Q ss_pred             CCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       185 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      .+.|..++|.+++  .+|+|.|.|.+-|+|--
T Consensus       361 ~~~V~dv~W~psG--eflLsvs~DQTTRlFa~  390 (764)
T KOG1063|consen  361 VDGVKDVDWDPSG--EFLLSVSLDQTTRLFAR  390 (764)
T ss_pred             cccceeeeecCCC--CEEEEeccccceeeecc
Confidence            8889999996544  48999999999999753

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=4.1e-17  Score=133.15  Aligned_cols=205  Identities=28%  Similarity=0.476  Sum_probs=164.4

Q ss_pred             ceEEEEE-ccCCC-eEEEEEe-cCeEEEEEcCC-CCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCcce
Q psy4653          17 RVKCCDL-HPTEP-WMLASLY-NGHVHVWNHET-NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQVCVFNYNTLER   91 (229)
Q Consensus        17 ~v~~~~~-~p~~~-~l~~~~~-dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~   91 (229)
                      .+..+.+ ++++. .++..+. |+.+.+||..+ ......+..+...+..+.|+|+++.+++++. |+.+.+|+....+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP  190 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence            6777777 88887 4444444 99999999998 7777888888889999999999999888885 99999999998888


Q ss_pred             EEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                      +..+..|...|.+++|+|++. .+++++.|+.|++||..........+.+|.... ...++| ++..+++++.|+.+++|
T Consensus       191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~  268 (466)
T COG2319         191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLW  268 (466)
T ss_pred             EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEe
Confidence            888888999999999999998 555669999999998874433332567776664 337887 45788899999999999


Q ss_pred             eCCCCCc-eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         171 QLGSASP-NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       171 d~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +.+.... +..+..|...+.++.|.+  +...+++++.|+.+++||.++.......
T Consensus       269 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~  322 (466)
T COG2319         269 DLRSSSSLLRTLSGHSSSVLSVAFSP--DGKLLASGSSDGTVRLWDLETGKLLSSL  322 (466)
T ss_pred             eecCCCcEEEEEecCCccEEEEEECC--CCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence            9987664 444567888899998854  4456777888899999999887655544

>KOG2055|consensus

Probab=99.82  E-value=5.4e-18  Score=134.25  Aligned_cols=199  Identities=17%  Similarity=0.294  Sum_probs=157.5

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcce
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      ..+|+++.|||..+.|++++.|+.++||-+...  ..+..+....-++.+..|.|+|. .+++++...-...||+++.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            468999999999999999999999999988643  34555566677999999999998 888888888899999988764


Q ss_pred             --EEEeccCC-CceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          92 --FHSFEAHS-DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        92 --~~~~~~h~-~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                        +....++. ..+..+.++|++++++..+..|.|.|-...+... ...+. -.+.+..+.|+. ++..|+..+.+|.|.
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVY  369 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEec-CCcEEEEEcCCceEE
Confidence              34444443 4678899999999999999999999987655432 22221 245678888885 678888888899999


Q ss_pred             EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      +||++..++++.... .+.+....++.+.++.+||+||..|-|.|||.+
T Consensus       370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             EEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            999998887776654 334555555556677799999999999999954

>KOG0644|consensus

Probab=99.82  E-value=7.8e-21  Score=159.52  Aligned_cols=216  Identities=20%  Similarity=0.282  Sum_probs=171.7

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      +|+..+.+.||-..|+|+.|.-.|.++++|+.|-.|+||..+++.++....+|...++.++.+.+.-.+++++.|..|++
T Consensus       179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            57788889999999999999999999999999999999999999999999999999999999888888999999999999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee----------------ee--------
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV----------------FE--------  139 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~----------------~~--------  139 (229)
                      |.+.++.++..+.+|++.|++++|+|..    +.+.||++++||.+-. ....+                +.        
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeecccccccccc
Confidence            9999999999999999999999999964    7889999999997611 00000                00        


Q ss_pred             c------ceeeEEEEEEcCCCCC-----------EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEE
Q psy4653         140 G------HTHYVMQIVINPKDNN-----------TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL  202 (229)
Q Consensus       140 ~------~~~~v~~~~~~~~~~~-----------~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  202 (229)
                      +      ......+.+|.. ...           +.+++=.+..+.+|++.++...+.+.+|...+..+++++- +..+.
T Consensus       334 gs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf-n~ri~  411 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF-NPRIA  411 (1113)
T ss_pred             ccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC-CcHhh
Confidence            0      001111122221 122           3333445567888998888888888899999999998653 44567


Q ss_pred             EEeeCCCeEEEEECCCCeEEEeec
Q psy4653         203 ISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       203 ~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ++++.||+..|||+-.+..++.+.
T Consensus       412 msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeee
Confidence            889999999999999888777653

>KOG1273|consensus

Probab=99.82  E-value=4.3e-18  Score=129.27  Aligned_cols=210  Identities=19%  Similarity=0.265  Sum_probs=158.6

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe---------c-------------------
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV---------C-------------------   56 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~---------~-------------------   56 (229)
                      +.+.+.+.+|..+|.|++||++|+.|++++.|..+.+||+..|.+++.+..         |                   
T Consensus        55 ~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi  134 (405)
T KOG1273|consen   55 FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVI  134 (405)
T ss_pred             cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEE
Confidence            356788999999999999999999999999999999999999876655420         0                   


Q ss_pred             ------------------CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-CceeEEEEcCCCCEEEEE
Q psy4653          57 ------------------DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS-DYVRCVAVHPTQPFLLTS  117 (229)
Q Consensus        57 ------------------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~v~~~~~~~~~~s~  117 (229)
                                        +....+..|.+.|+++++|...|.+.++|.++.+++..++.-. ..|..+-|+..+..|+.-
T Consensus       135 ~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN  214 (405)
T KOG1273|consen  135 DFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN  214 (405)
T ss_pred             EecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEe
Confidence                              0012233477788999999999999999999999888776655 679999999999999999


Q ss_pred             eCCCcEEEEecCCceeee---eeeecc-------eeeEEEEEEcCCCCCEEEEEE-CCCcEEEEeCCCCCceEEEecCC-
Q psy4653         118 SDDMLIKLWNWEKAWACQ---QVFEGH-------THYVMQIVINPKDNNTFASAS-LDRTVKVWQLGSASPNFTLEGHE-  185 (229)
Q Consensus       118 ~~d~~v~lwd~~~~~~~~---~~~~~~-------~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~h~-  185 (229)
                      +.|+.||.|++++-....   ..-..|       .-+-.++.|+. ++.++..++ ....+++|.-..+..++.+.|.. 
T Consensus       215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg  293 (405)
T KOG1273|consen  215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG  293 (405)
T ss_pred             cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence            999999999986321110   000011       11224556665 777776655 66789999999999999998876 


Q ss_pred             CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       186 ~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .....++|.+  -..++++- ..|.|++|....
T Consensus       294 E~l~DV~whp--~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  294 EELLDVNWHP--VRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             hheeeccccc--ceeeeeec-cCCceEEEEeec
Confidence            4566777754  33456555 678999998654

>KOG2919|consensus

Probab=99.82  E-value=9e-19  Score=133.32  Aligned_cols=186  Identities=16%  Similarity=0.225  Sum_probs=148.6

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEc-CCCCeEEEEE-------ecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCc
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNH-ETNQNVKSFE-------VCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~-~~~~~~~~~~-------~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .|++|+|||..|++|- ...|+++|+ +.|..-..+.       ....-+.+++|+|-. +.+++|+-...+-|+.-..+
T Consensus       162 hsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~  240 (406)
T KOG2919|consen  162 HSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR  240 (406)
T ss_pred             eeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence            6899999999999875 689999999 6664322221       113458999999954 58999999999999988888


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeeeeeccee---eEEEEEEcCCCCCEEEEEECCC
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEKAWACQQVFEGHTH---YVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      .++..+-+|.+.|+.+.|+++|..|++|+. |-.|.+||++....+...+..|..   ........| ++..|++|+.||
T Consensus       241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG  319 (406)
T KOG2919|consen  241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDG  319 (406)
T ss_pred             CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCc
Confidence            899988999999999999999999998876 678999999887666666666654   333444556 678999999999


Q ss_pred             cEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC
Q psy4653         166 TVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD  208 (229)
Q Consensus       166 ~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d  208 (229)
                      .|++||++. +.++..+..|+..++.+++.+..  ++++|++..
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m--pilatssGq  361 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM--PILATSSGQ  361 (406)
T ss_pred             cEEEEecCCCCCcccccccccccccceecCccc--ceeeeccCc
Confidence            999999987 66677888889999999986553  467777654

>KOG2096|consensus

Probab=99.82  E-value=3.8e-18  Score=129.76  Aligned_cols=197  Identities=15%  Similarity=0.250  Sum_probs=152.5

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---c
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT---L   89 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---~   89 (229)
                      .|.-.|..+.....+.++.+++.|..|.+|+++ |+.+......+......+.+|+|+++++++---.+++|.+--   +
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            466677777888888899999999999999999 888888777777788889999999999999999999998621   1


Q ss_pred             -----ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee------eeeee----ecceeeEEEEEEcCCC
Q psy4653          90 -----ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA------CQQVF----EGHTHYVMQIVINPKD  154 (229)
Q Consensus        90 -----~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~------~~~~~----~~~~~~v~~~~~~~~~  154 (229)
                           +++.++++|+..|.+++|+|+...+++.+.||++++||++-...      .++.+    ....+....+.++| +
T Consensus       264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~  342 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-S  342 (420)
T ss_pred             chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-C
Confidence                 24567899999999999999999999999999999999753211      12221    11122334788888 5


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCceEEE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         155 NNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      +..|+ .+....+.++..+.++..-++ +.|...|.+++|.  .++.+++|+++ +.++++.
T Consensus       343 g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~--~~g~~~atcGd-r~vrv~~  400 (420)
T KOG2096|consen  343 GDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYS--SDGKYIATCGD-RYVRVIR  400 (420)
T ss_pred             CcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEec--CCCcEEeeecc-eeeeeec
Confidence            66666 455778999998877655444 3588899999994  46678887764 6787765

>KOG1274|consensus

Probab=99.81  E-value=1.1e-17  Score=141.88  Aligned_cols=208  Identities=20%  Similarity=0.298  Sum_probs=166.0

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC-CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN-QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      +|+...+.++|.|+|.++.+++.||.|++|+..+. +....+..+...+.++  ....+.|++|+.++.|..+.+..++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~i--a~~s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSI--ACYSNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEE--eecccceEEeeccceEEEeeCCCCCc
Confidence            68999999999999999999999999999998876 3333433344445444  44566999999999999999887765


Q ss_pred             EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      -..+..-+-.+++++|+.+|.+++.||.|-.|++-++.+. .....+.+|..+|.++.++| ++.+||+.+-||.+++||
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEE
Confidence            4344445568999999999999999999999999999776 34677889999999999999 688999999999999999


Q ss_pred             CCCCCceEEEecC--------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         172 LGSASPNFTLEGH--------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       172 ~~~~~~~~~~~~h--------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +..+...+++.+-        ...+.-++|.  +++..++....|+.|++|+....+...++-
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~--Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr  227 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWH--PKGGTLAVPPVDNTVKVYSRKGWELQFKLR  227 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeec--CCCCeEEeeccCCeEEEEccCCceeheeec
Confidence            9988777666432        1123445664  444568888899999999998887766653

>KOG0303|consensus

Probab=99.80  E-value=8e-19  Score=136.61  Aligned_cols=162  Identities=23%  Similarity=0.345  Sum_probs=131.8

Q ss_pred             EEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-------cceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcE
Q psy4653          53 FEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLI  123 (229)
Q Consensus        53 ~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v  123 (229)
                      +.+|..+|..+.|.| +++.||+||.|.+|.||.+..       .+++..+.+|+.+|.-+.|||.-. .|++++.|++|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            346788999999999 567899999999999998743       245678899999999999999876 57899999999


Q ss_pred             EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEE
Q psy4653         124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI  203 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  203 (229)
                      .+|++..+.....+ . |...|+++.|+. ++.+|+|.+.|+.||+||.++++.+.+..+|.+.-...+.+ -+++.++.
T Consensus       157 ~iWnv~tgeali~l-~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif-l~~g~i~t  232 (472)
T KOG0303|consen  157 SIWNVGTGEALITL-D-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF-LASGKIFT  232 (472)
T ss_pred             EEEeccCCceeeec-C-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE-eccCceee
Confidence            99999988655443 3 999999999996 89999999999999999999999988888887643332322 23444555


Q ss_pred             Eee---CCCeEEEEECCC
Q psy4653         204 SGA---DDRLVKIWDYQN  218 (229)
Q Consensus       204 s~s---~d~~i~iwd~~~  218 (229)
                      ||.   .++.+-+||..+
T Consensus       233 TGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNN  250 (472)
T ss_pred             eccccccccceeccCccc
Confidence            555   488999999765

>KOG4227|consensus

Probab=99.80  E-value=1.2e-17  Score=130.33  Aligned_cols=168  Identities=11%  Similarity=0.126  Sum_probs=140.7

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC------CCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCC
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE------TNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDD   78 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d   78 (229)
                      ..++.+.+|+.+|+++.|+..+++|++|+.|-.+++|++.      +.+++.....+. ..|.|+.|......+.+|..+
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            4567788999999999999999999999999999999975      456666655443 689999999988999999999


Q ss_pred             CeEEEEECCCcceEEEeccCC---CceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCC
Q psy4653          79 MQVCVFNYNTLERFHSFEAHS---DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPK  153 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~h~---~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~  153 (229)
                      +++...|+++.+.+..+. |.   +.|..+..+|.++.|++.+.++.|.+||.+........+  .......+.+.|+|.
T Consensus       127 ~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             ceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            999999999988877664 44   489999999999999999999999999998764322222  223455788899999


Q ss_pred             CCCEEEEEECCCcEEEEeCCC
Q psy4653         154 DNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      .+.+|++++..+-+-+||.+.
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             CceeEEeccccCCCCceeecc
Confidence            999999999999999999864

>KOG1587|consensus

Probab=99.79  E-value=9.3e-18  Score=140.51  Aligned_cols=203  Identities=21%  Similarity=0.343  Sum_probs=153.9

Q ss_pred             CCceEEEEEccCCCeEEE-EEecCeEEEEEcCCCCe--EEEE----EecCcCeEEEEEcCCCCE--EEEEeCCCeEEEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQN--VKSF----EVCDLPVRAAKFVPRKNW--IVTGSDDMQVCVFN   85 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~--~~~~----~~~~~~v~~~~~~~~~~~--l~sg~~d~~i~iwd   85 (229)
                      ..+|.|+.|+|..+.+++ |+.+|+|.+||++.+..  ...+    ..|..++..+.|..+...  +++++.||+|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            458999999998776666 56899999999998755  2222    235678999999876544  99999999999998


Q ss_pred             CCCcce-----EEEeccC-------CCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCcee-e------eeeeecceeeE
Q psy4653          86 YNTLER-----FHSFEAH-------SDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWA-C------QQVFEGHTHYV  145 (229)
Q Consensus        86 ~~~~~~-----~~~~~~h-------~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~-~------~~~~~~~~~~v  145 (229)
                      ++....     +.....|       ...+++++|.+..+ .|+.|+.+|.|.--+...... .      ...+..|.++|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            753221     1111111       23578999998766 688999999998744332211 1      22455678899


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEeCC-CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         146 MQIVINPKDNNTFASASLDRTVKVWQLG-SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       146 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +.+.++|.....|+|++ |.++++|... ...|+..+..+...+.+++|++. ....++++..||.+.|||+...
T Consensus       402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt-rpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT-RPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc-CceEEEEEcCCCceehhhhhcc
Confidence            99999999888888887 9999999988 77889889888888999999754 3347889999999999998643

>KOG0649|consensus

Probab=99.79  E-value=7.3e-17  Score=118.75  Aligned_cols=195  Identities=14%  Similarity=0.300  Sum_probs=144.1

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe------EEEE--Eec-----CcCeEEEEEcCCCCEEEEEeC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN------VKSF--EVC-----DLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      ..+|..+|+.++|+  ..+|++++ ||.|+-|.++.-..      +...  +.+     --+|+++...|+.+-++.++.
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG  134 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG  134 (325)
T ss_pred             ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence            47999999999999  44566655 69999998764321      1110  111     135899999999888777789


Q ss_pred             CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee--------eecc-eeeEEEE
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV--------FEGH-THYVMQI  148 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~--------~~~~-~~~v~~~  148 (229)
                      |+.+.-||+++++..+.+++|++.|.++.-......+++|++||++|+||+++.+....+        ...| ...|.++
T Consensus       135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal  214 (325)
T KOG0649|consen  135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL  214 (325)
T ss_pred             CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE
Confidence            999999999999999999999999999999777788999999999999999876443221        1122 2346666


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      +.   ++..+++|+ ...+.+|.+++.+++..+.- .+.+..+.|..  +  .+++++..+.|.-|.+.
T Consensus       215 a~---~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~--d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  215 AV---NEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDFVD--D--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ec---cCceEEecC-CCceeEEeccCCCceEEEec-ccceeEeeeec--c--eEEEeccccceeeeeec
Confidence            65   346777554 67899999999887766643 34577778842  2  57777776777777654

>KOG1188|consensus

Probab=99.78  E-value=8e-18  Score=128.85  Aligned_cols=126  Identities=19%  Similarity=0.362  Sum_probs=101.1

Q ss_pred             chhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCCeEEEE--EecC-cCeEEEEEcCCCCEEEEEeC--
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQNVKSF--EVCD-LPVRAAKFVPRKNWIVTGSD--   77 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~sg~~--   77 (229)
                      .++...++++.+-++.++|..+  ...+.+++.||.|++||+++...+..+  .++. .+..+++.+.+++.+++|+.  
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~  139 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT  139 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence            4667788999999999999873  455677889999999999987665443  3333 46788888878999999974  


Q ss_pred             --CCeEEEEECCCcce-EEEe-ccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCC
Q psy4653          78 --DMQVCVFNYNTLER-FHSF-EAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEK  130 (229)
Q Consensus        78 --d~~i~iwd~~~~~~-~~~~-~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~  130 (229)
                        +-.+.+||++..+. ++.+ ..|.+-|+++.|||..+ +|++||.||-|.|||+..
T Consensus       140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence              56799999976554 5554 67999999999999876 678999999999999864

>KOG2055|consensus

Probab=99.77  E-value=4.5e-17  Score=129.10  Aligned_cols=199  Identities=16%  Similarity=0.229  Sum_probs=154.1

Q ss_pred             CCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEE---ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          14 RSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFE---VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      ..-++.++.|+|+|. .+++++.-..+..||+.+.+..+.-.   ..+..+.....+|++++|+..+..|.|.+.-..++
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~  335 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK  335 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence            356899999999998 88888999999999999987755422   22345777788999999999999999999988888


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeeccee-eEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH-YVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      +.+..++ -.+.|..++|+.+++.++.++.+|.|.+||++.+ .+.+.+....+ .-+.++.++ ++.+||+|+..|.+.
T Consensus       336 eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVN  412 (514)
T KOG2055|consen  336 ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVN  412 (514)
T ss_pred             hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecC-CCceEEeccCcceEE
Confidence            8888776 4578999999999999999999999999999887 66666643211 234556665 678999999999999


Q ss_pred             EEeCCC------CCceE-----------------------------------------EE---e---cCCCceEEEEEEe
Q psy4653         169 VWQLGS------ASPNF-----------------------------------------TL---E---GHEKGVNCVDYYH  195 (229)
Q Consensus       169 ~wd~~~------~~~~~-----------------------------------------~~---~---~h~~~v~~~~~~~  195 (229)
                      +||..+      .+|++                                         ++   +   ..-..+.|++|++
T Consensus       413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP  492 (514)
T KOG2055|consen  413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP  492 (514)
T ss_pred             EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence            999653      11211                                         00   0   1112478888854


Q ss_pred             CCCcCEEEEeeCCCeEEEEECC
Q psy4653         196 GGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       196 ~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                        ++.+|+.|-.+|.|.+|.+.
T Consensus       493 --~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  493 --NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             --CCceEEeecCCCceeeEeec
Confidence              45689999999999999864

>KOG1445|consensus

Probab=99.77  E-value=5.3e-18  Score=139.27  Aligned_cols=203  Identities=15%  Similarity=0.224  Sum_probs=146.8

Q ss_pred             CceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCC-------eEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q psy4653          16 DRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQ-------NVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        16 ~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~   86 (229)
                      ..|+.+.|.| |...|++++.||.|++|.+..+.       ....+..|.+.|.++.|+|= .+.|++++.|.+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            4699999999 56788999999999999987653       34556778889999999994 578999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeeccee-eEEEEEEcCCCCCEEEEEECC-
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH-YVMQIVINPKDNNTFASASLD-  164 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d-  164 (229)
                      .+++....+.+|++.|..++|+|+|+.+++.+.||+|++|+-+......+.-.+-.+ .-..+.|-- ++.+++..+.| 
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk  786 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccc
Confidence            999988899999999999999999999999999999999998766444333222111 112344432 56666655544 


Q ss_pred             ---CcEEEEeCCCC--CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         165 ---RTVKVWQLGSA--SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       165 ---~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                         +.|.+||..+.  .++.+..-...+-.-+-++..+.+.+++||-.|..|.+|.+-..
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence               46788887643  23333221111111122222233457889999999999987543

>KOG0650|consensus

Probab=99.77  E-value=9.7e-18  Score=136.67  Aligned_cols=198  Identities=19%  Similarity=0.287  Sum_probs=165.8

Q ss_pred             cCCCceEEEEEccCCCeEEEEEe---cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLY---NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .|..+|..+.||-.|.+|++.+.   ...|.|.++...+.+.-|.-....+.++.|+|..-+|++++ ...|+|||+..+
T Consensus       519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq  597 (733)
T KOG0650|consen  519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ  597 (733)
T ss_pred             ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH
Confidence            47889999999999999999764   46899999998887777766667899999999988888875 556999999887


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      ..++.+.....-|..+++||.|..++.|+.|+.+..+|++-..++.+.+.-|...+..|++++. -.+|++|+.|+++.+
T Consensus       598 elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~V  676 (733)
T KOG0650|consen  598 ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIV  676 (733)
T ss_pred             HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEE
Confidence            7777776667789999999999999999999999999998776677777789999999999984 579999999999999


Q ss_pred             EeCC------C---CCceEEEecCCCc----eEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653         170 WQLG------S---ASPNFTLEGHEKG----VNCVDYYHGGDKPYLISGADDRLVKIW  214 (229)
Q Consensus       170 wd~~------~---~~~~~~~~~h~~~----v~~~~~~~~~~~~~l~s~s~d~~i~iw  214 (229)
                      +.-.      .   -.++..+++|...    |..+.|  .+....|+|++.||+|++|
T Consensus       677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w--HP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW--HPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EeeeeehhhhcCCceEeeeeccCceeecccceEeecc--cCCCceEEecCCCceEEee
Confidence            8521      1   1367788898654    666666  4567799999999999998

>KOG1538|consensus

Probab=99.76  E-value=1.7e-16  Score=131.22  Aligned_cols=197  Identities=12%  Similarity=0.181  Sum_probs=142.0

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-------
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL-------   89 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-------   89 (229)
                      .|..++|-|||..|+.++ +..+.+||.+.|..+..+++|++-|.|++|+.+|+.+++|+.|..+.+|..+-.       
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            799999999999888776 568899999999999999999999999999999999999999999999986421       


Q ss_pred             -ceEE--Eecc---------------------------CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee-eeee
Q psy4653          90 -ERFH--SFEA---------------------------HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC-QQVF  138 (229)
Q Consensus        90 -~~~~--~~~~---------------------------h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~-~~~~  138 (229)
                       ..++  .|..                           ...+|.+.+|..||++++-|-.+|+|.+-+-....+. ....
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp  172 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP  172 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence             1111  1110                           1234677888888999999999999998874333222 1222


Q ss_pred             ecceeeEEEEEEcCC---------------------------------------------CCCEEEEEECCCcEEEEeCC
Q psy4653         139 EGHTHYVMQIVINPK---------------------------------------------DNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus       139 ~~~~~~v~~~~~~~~---------------------------------------------~~~~l~s~~~d~~i~~wd~~  173 (229)
                      -|...+|..+.|+|.                                             +|.+++.|+.|+.+.+|...
T Consensus       173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence            234556666666652                                             34455666666666666432


Q ss_pred             CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       174 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                       +..+.++......+..++..  +++++++.|+.||+|..|++-
T Consensus       253 -GvrLGTvg~~D~WIWtV~~~--PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  253 -GVRLGTVGEQDSWIWTVQAK--PNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             -CeEEeeccccceeEEEEEEc--cCCceEEEEEccCeeehhhhH
Confidence             33334444444567777774  456789999999999998863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2.7e-16  Score=130.90  Aligned_cols=209  Identities=12%  Similarity=0.063  Sum_probs=141.7

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEec---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYN---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVF   84 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iw   84 (229)
                      +.+..|...+.+.+|+|+|+.++.++.+   ..|.+||+.+++.... ...........|+|+|+.|+.++ .+|.+.||
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence            3466777889999999999999887654   3799999998765322 22223345789999999887764 67766555


Q ss_pred             --ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          85 --NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        85 --d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                        |+++++ ...+..+...+....|+|+++.++ ++..++...||++.......... .+..  ....|+| ++..++..
T Consensus       276 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp-DG~~ia~~  350 (429)
T PRK01742        276 VMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISA-DGKTLVMI  350 (429)
T ss_pred             EEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCC-CCCEEEEE
Confidence              665554 344555666788999999999765 55567888888874322212222 2322  3467888 67888877


Q ss_pred             ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC--CCCeEEEeeccC
Q psy4653         162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY--QNKTCVQTLESG  228 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~  228 (229)
                      +.++ +.+||+.++........+  ......|  ++++.+|+.++.++.+.+|.+  ..+++++++..+
T Consensus       351 ~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~--sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        351 NGDN-VVKQDLTSGSTEVLSSTF--LDESPSI--SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             cCCC-EEEEECCCCCeEEecCCC--CCCCceE--CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence            7665 666999877643222222  2234566  456778999999998888886  357777877643

>KOG1009|consensus

Probab=99.76  E-value=1.1e-17  Score=130.50  Aligned_cols=157  Identities=20%  Similarity=0.341  Sum_probs=132.8

Q ss_pred             CceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCe---------EEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          16 DRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQN---------VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        16 ~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+|..+.|++... .+++|+.|..|++|-++.+..         +..+..|..+|+++.|+|+|++|++|+++|.+.+|-
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            5999999999876 899999999999999875432         223456788999999999999999999999999997


Q ss_pred             CC--------C--------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEE
Q psy4653          86 YN--------T--------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV  149 (229)
Q Consensus        86 ~~--------~--------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~  149 (229)
                      ..        +        ....+.+.+|.+.|.-++|+|++.++++++-|.++++||+..+ +....+.+|..++..++
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVA  172 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeeccccccccceee
Confidence            55        2        1123556789999999999999999999999999999999876 66777889999999999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         150 INPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       150 ~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      |.| -+.++++-+.|...+.+.+..
T Consensus       173 wDp-l~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  173 WDP-LNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             cch-hhhhhhhhccCcccceeeeee
Confidence            999 568999989898777776654

>KOG1517|consensus

Probab=99.75  E-value=2.3e-16  Score=135.95  Aligned_cols=201  Identities=19%  Similarity=0.276  Sum_probs=152.7

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC---cCeEEEEEcCC--CCEEEEEeCCCeEEEEE-CCCc-
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD---LPVRAAKFVPR--KNWIVTGSDDMQVCVFN-YNTL-   89 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---~~v~~~~~~~~--~~~l~sg~~d~~i~iwd-~~~~-   89 (229)
                      +=..+.|||-.+.++++.....|.+||.+.++....|....   ..|+.+.+..+  ..++++|+.||.|+||+ ..+. 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            45678899999999998888899999999999988877653   45888888654  34799999999999995 3332 


Q ss_pred             ---ceEEEec---cCC---Cce-eEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          90 ---ERFHSFE---AHS---DYV-RCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        90 ---~~~~~~~---~h~---~~i-~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                         +.+..+.   ++.   ... .-++|.-..-+++++|.-..|+|||.+....+..+..+....++.+.-+...+++++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence               2222221   111   111 346777666677777778999999998876767776666667777776655678999


Q ss_pred             EEECCCcEEEEeCCCCC---ceEEEecCCCc--eEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         160 SASLDRTVKVWQLGSAS---PNFTLEGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~---~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .|..||.+|+||.+...   .+...+.|...  |..+.+.+.+.+ .|++|+.||.|++||++.
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEeccc
Confidence            99999999999987643   45666778766  888888765555 689999999999999987

>KOG1009|consensus

Probab=99.75  E-value=2.7e-17  Score=128.46  Aligned_cols=165  Identities=23%  Similarity=0.394  Sum_probs=138.6

Q ss_pred             CcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcc---------eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEE
Q psy4653          57 DLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLE---------RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW  126 (229)
Q Consensus        57 ~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~---------~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lw  126 (229)
                      ..++.++.|.+... .|+||+.|..|++|.++...         -+..+..|...|+++.|+|++.++++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35799999998765 99999999999999875432         234567899999999999999999999999999999


Q ss_pred             ecC--------C-------ceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEE
Q psy4653         127 NWE--------K-------AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV  191 (229)
Q Consensus       127 d~~--------~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  191 (229)
                      -..        .       .+....+..+|...++.++|.| ++..+++++.|..+++||+..+.....+..|...++-+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            764        1       2445666778999999999998 67899999999999999999999999999999999999


Q ss_pred             EEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       192 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +|.  +..+++++-+.|...+.+++.....++.
T Consensus       172 awD--pl~qyv~s~s~dr~~~~~~~~~~~~~~~  202 (434)
T KOG1009|consen  172 AWD--PLNQYVASKSSDRHPEGFSAKLKQVIKR  202 (434)
T ss_pred             ecc--hhhhhhhhhccCcccceeeeeeeeeeee
Confidence            984  4556899999999888888776554443

>KOG0771|consensus

Probab=99.74  E-value=9.5e-17  Score=125.91  Aligned_cols=196  Identities=13%  Similarity=0.126  Sum_probs=148.0

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc-
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA-   97 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-   97 (229)
                      .+++|+++|..+++|+.||.+++|++.+...+.....|..+|..+.|+|+++.|++-+.| ..+||+.+++-.+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999998888777777888899999999999999999999 899999999865544331 


Q ss_pred             -CCCceeEEEEcCCC---CE--EEEEeCCCcEEEEecCCce--e--eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          98 -HSDYVRCVAVHPTQ---PF--LLTSSDDMLIKLWNWEKAW--A--CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        98 -h~~~i~~v~~~~~~---~~--~~s~~~d~~v~lwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                       -...+..+.|+.+.   .+  ++....-+.|++||+..-.  .  ...........|.++++++ ++++++-|+.||.|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV  305 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence             12345667777665   22  2333444677777652110  1  1111112234588899987 79999999999999


Q ss_pred             EEEeCCCCCceEEE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         168 KVWQLGSASPNFTL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       168 ~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .+++..+-+.++-. +.|...|..+.|.|  +.+++++-+.|..+.+..+..
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~P--dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSP--DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcC--CcCcccccccCCceeEEEEee
Confidence            99998776655444 56888899999965  566889989998888877643

>KOG1240|consensus

Probab=99.73  E-value=1.9e-15  Score=131.98  Aligned_cols=218  Identities=14%  Similarity=0.220  Sum_probs=155.7

Q ss_pred             cchhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCC-------CeEEEEEecCcCeEEEEEcCCCCEEEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETN-------QNVKSFEVCDLPVRAAKFVPRKNWIVTG   75 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~sg   75 (229)
                      |..+..++..|+..|..++.++.. +++++|+.||+|++||.+.-       +...+|......+.++...+.++.+|+|
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            456667789999999999988776 89999999999999998642       2334444456678999999999999999


Q ss_pred             eCCCeEEEEECCCc--ce-----------------E--EEe----------------------------------ccCCC
Q psy4653          76 SDDMQVCVFNYNTL--ER-----------------F--HSF----------------------------------EAHSD  100 (229)
Q Consensus        76 ~~d~~i~iwd~~~~--~~-----------------~--~~~----------------------------------~~h~~  100 (229)
                      +.||.|.+.+++..  ..                 +  +.+                                  +...+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999987641  00                 0  000                                  01124


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC--CEEEEEE--CCCcEEEEeCCCCC
Q psy4653         101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN--NTFASAS--LDRTVKVWQLGSAS  176 (229)
Q Consensus       101 ~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~--~d~~i~~wd~~~~~  176 (229)
                      .|++++.+|.+..++.|+..|.+.+||++-+.....-..++..++..+..+|..+  ...++++  ..+.+.+|++.++.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            5889999999999999999999999999876554444445567788888877544  4555544  57899999998876


Q ss_pred             ceEEEecC-----------------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         177 PNFTLEGH-----------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       177 ~~~~~~~h-----------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      +...+-.-                 ...+..+.......+.++.+|+.|..||.||..+.+.
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            55544221                 0111111111122345899999999999999977643

>KOG2445|consensus

Probab=99.73  E-value=1.3e-15  Score=115.44  Aligned_cols=163  Identities=17%  Similarity=0.222  Sum_probs=125.3

Q ss_pred             ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----cceEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEec
Q psy4653          55 VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT----LERFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNW  128 (229)
Q Consensus        55 ~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~----~~~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~  128 (229)
                      .|++-+.++.|.+.|+.+|+++.|++++|||.+.    -.+....+.|.+.|..+.|-+.  |+.+++++.|+++.||.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            4567799999999999999999999999999643    2355677899999999999643  788999999999999986


Q ss_pred             CC--------ceeeeeeeecceeeEEEEEEcCC-CCCEEEEEECCCcEEEEeCCCC------------------------
Q psy4653         129 EK--------AWACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSA------------------------  175 (229)
Q Consensus       129 ~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~------------------------  175 (229)
                      ..        .+.....+......|+.+.|.|. -+..||+++.||.+|+|+....                        
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~  170 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ  170 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence            21        22334445566778999999885 3567889999999999975321                        


Q ss_pred             -------------C------------------------------ceEEEecCCCceEEEEEEeCCCc--CEEEEeeCCCe
Q psy4653         176 -------------S------------------------------PNFTLEGHEKGVNCVDYYHGGDK--PYLISGADDRL  210 (229)
Q Consensus       176 -------------~------------------------------~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~d~~  210 (229)
                                   .                              .+.++.+|..+|.+++|.|+...  .+||+|+.|| 
T Consensus       171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-  249 (361)
T KOG2445|consen  171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-  249 (361)
T ss_pred             cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence                         0                              00133467778899998775432  4689999999 


Q ss_pred             EEEEECCC
Q psy4653         211 VKIWDYQN  218 (229)
Q Consensus       211 i~iwd~~~  218 (229)
                      |+||+++.
T Consensus       250 v~I~~v~~  257 (361)
T KOG2445|consen  250 VRIFKVKV  257 (361)
T ss_pred             EEEEEEee
Confidence            99999874

>KOG1523|consensus

Probab=99.72  E-value=6.1e-16  Score=117.78  Aligned_cols=204  Identities=17%  Similarity=0.167  Sum_probs=162.1

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCc
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY-NTL   89 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~-~~~   89 (229)
                      ...+|+|-+|++|...++.+.....|.|+.....+   ...++..|+..|+.++|+|..+.|++++.|..-.+|.. ..+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            45689999999999999999999999999988766   45567778889999999999999999999999999987 333


Q ss_pred             --ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          90 --ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        90 --~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                        ++.-.+..++...++|.|+|.++.|++|+.-+.|.||-.+....   ...+-..+.+.|.++.|+| ++-++++|+.|
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D  167 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTD  167 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccC
Confidence              35556677888999999999999999999999999998764321   2233445677899999999 67899999999


Q ss_pred             CcEEEEeCC-----C-------------CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         165 RTVKVWQLG-----S-------------ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       165 ~~i~~wd~~-----~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +.+|++..-     .             +....+.....+.+..+.|.++  +..|+-.+.|..+.+=|.....
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--G~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--GNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--CCEeeEecCCCceEEeecCCCc
Confidence            999999631     1             0111222233456888898554  4579999999999998887653

>KOG0290|consensus

Probab=99.72  E-value=8.1e-16  Score=115.83  Aligned_cols=200  Identities=15%  Similarity=0.203  Sum_probs=149.5

Q ss_pred             cccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCe---EEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQN---VKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFN   85 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd   85 (229)
                      -..+..++++.+|+.-.+ ++.+++-|-+..+||++++..   ...+-.|+.+|..++|...+ +.+|+.+.||++++||
T Consensus       146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            456778999999998655 555567899999999999743   55677899999999999865 4799999999999999


Q ss_pred             CCCcce---EEEeccCCCceeEEEEcCCCC-EEEEEeC-CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          86 YNTLER---FHSFEAHSDYVRCVAVHPTQP-FLLTSSD-DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        86 ~~~~~~---~~~~~~h~~~i~~v~~~~~~~-~~~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ++.-+.   +.+-.........++|++++. ++++-.. ...|.+-|++........+.+|.+.|..++|.|.....+.|
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence            976542   222222245678899998776 5565544 46899999987766677788999999999999999999999


Q ss_pred             EECCCcEEEEeCCCC------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEE
Q psy4653         161 ASLDRTVKVWQLGSA------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  213 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~i  213 (229)
                      ++.|..+.+||+.+.      .|+.... ....|+.+.|.+. ....++.++. +++.|
T Consensus       306 aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~-~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSS-QPDWIAICFG-KKLEI  361 (364)
T ss_pred             cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeeccc-CCCEEEEEec-CeeeE
Confidence            999999999998653      2333333 2456888998642 2234554443 44443

>KOG0322|consensus

Probab=99.72  E-value=9.2e-17  Score=119.37  Aligned_cols=156  Identities=22%  Similarity=0.373  Sum_probs=122.7

Q ss_pred             CCceEEEEEccC-C--CeEEEEEecCeEEEEEcCCCCeE----------EEEEecCcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653          15 SDRVKCCDLHPT-E--PWMLASLYNGHVHVWNHETNQNV----------KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus        15 ~~~v~~~~~~p~-~--~~l~~~~~dg~v~~wd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      .+.|+|.++..+ +  ..|++|-.+|+|.+||+.++..+          ..+..|..+|.++.|.+.-+.=++|+.+.++
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            456788775433 3  35667779999999999998433          3334567899999999877777888899999


Q ss_pred             EEEECCCc--ce-E-EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653          82 CVFNYNTL--ER-F-HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT  157 (229)
Q Consensus        82 ~iwd~~~~--~~-~-~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (229)
                      ..|.++..  .. + ....--...|..+.+.||++.++|++.|+.||+|++++. .+..++.-|...|++++|+| +..+
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfsp-d~~l  307 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSP-DCEL  307 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCC-CCch
Confidence            99988643  21 1 111112346889999999999999999999999999876 55777888999999999999 5679


Q ss_pred             EEEEECCCcEEEEeC
Q psy4653         158 FASASLDRTVKVWQL  172 (229)
Q Consensus       158 l~s~~~d~~i~~wd~  172 (229)
                      +|+++.|.+|.+|++
T Consensus       308 mAaaskD~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDARISLWKL  322 (323)
T ss_pred             hhhccCCceEEeeec
Confidence            999999999999986

>KOG1524|consensus

Probab=99.71  E-value=2.7e-16  Score=127.04  Aligned_cols=187  Identities=13%  Similarity=0.250  Sum_probs=140.8

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      +-+...+|...+.|-.|+|+|.-|++++.||.|++|.-. |-+..++.+...+|.|++|.|+.+.++-+ ..+++.|=.+
T Consensus        96 VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL  173 (737)
T KOG1524|consen   96 VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPL  173 (737)
T ss_pred             hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeec
Confidence            445678899999999999999999999999999999644 44444445556789999999987755443 3455666556


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      .....+-..++|.+.|.+++|++...++++|+.|-..++||-...  ....-..|..+|++++|+|.  ..++-++.. +
T Consensus       174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t  248 (737)
T KOG1524|consen  174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--NLFTSAAEEYAITSVAFNPE--KDYLLWSYN-T  248 (737)
T ss_pred             ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--ccccCChhccceeeeeeccc--cceeeeeee-e
Confidence            666666778999999999999999999999999999999997543  23334568899999999994  566666643 4


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEE
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  213 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~i  213 (229)
                      +|+=           ....+.|..++|+  .+++.++.|...|.+.+
T Consensus       249 ~R~~-----------~p~~GSifnlsWS--~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  249 ARFS-----------SPRVGSIFNLSWS--ADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeec-----------CCCccceEEEEEc--CCCceeeccccCceEEE
Confidence            5532           1224567778884  45566777777777644

>KOG2394|consensus

Probab=99.70  E-value=5.7e-16  Score=125.06  Aligned_cols=159  Identities=19%  Similarity=0.420  Sum_probs=125.8

Q ss_pred             CCceEEEEEccCCCeEEE-EEecCeEEEEEcCC--------------CC--------------eEEEEEecCcCeEEEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLA-SLYNGHVHVWNHET--------------NQ--------------NVKSFEVCDLPVRAAKF   65 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~--------------~~--------------~~~~~~~~~~~v~~~~~   65 (229)
                      +.+|.|+.|-|-++.++. .-.+|.+.++|.+-              +.              ++..+...+..+...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            368999999997665555 45799999997531              00              11112223457899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE
Q psy4653          66 VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV  145 (229)
Q Consensus        66 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v  145 (229)
                      +|+|++||+.+.||-++|||+.+++.+..++.-=+...|++|+||++++++|++|--|.||.+.+. .+...-++|...|
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWV  377 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWV  377 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccce
Confidence            999999999999999999999998877666665677999999999999999999999999999766 4455567899999


Q ss_pred             EEEEEcCCC-----------------------------------------------CCEEEEEECCCcEEEEeCCC
Q psy4653         146 MQIVINPKD-----------------------------------------------NNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       146 ~~~~~~~~~-----------------------------------------------~~~l~s~~~d~~i~~wd~~~  174 (229)
                      ..|+|.|..                                               .-.|.|.+.|-.+.+||+..
T Consensus       378 s~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  378 SVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             eeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence            999998410                                               11578889999999999864

>KOG1445|consensus

Probab=99.70  E-value=6.7e-16  Score=127.13  Aligned_cols=207  Identities=19%  Similarity=0.262  Sum_probs=149.8

Q ss_pred             hcccCCCceEEEEEccCCCe-EEEEEecCeEEEEEcCCCCeEE------EEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPW-MLASLYNGHVHVWNHETNQNVK------SFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~-l~~~~~dg~v~~wd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      .+.+|++.|..+.|+|-... |++++.|..|+||.+..+....      .+...+..+-++.|+|...-|+..+..|.+.
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~  153 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY  153 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence            47899999999999997654 5556789999999998543322      1223345789999999877666667899999


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-EEEEEEcCCCCCEEEEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-VMQIVINPKDNNTFASA  161 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~  161 (229)
                      |||+.+++.+..+.+|.+.|.+..|+.||.++++++.|+.|+|||-+......+..++|.+. -..+.|.- +...|+|-
T Consensus       154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~G-n~~rlisT  232 (1012)
T KOG1445|consen  154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAG-NWERLIST  232 (1012)
T ss_pred             EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeecc-chhhhhhc
Confidence            99999999999999999999999999999999999999999999987766666666888654 24556653 33344444


Q ss_pred             ECC----CcEEEEeCCC-CCceEEEecCC-CceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCC
Q psy4653         162 SLD----RTVKVWQLGS-ASPNFTLEGHE-KGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       162 ~~d----~~i~~wd~~~-~~~~~~~~~h~-~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~  219 (229)
                      +.+    ..+++||.+. +.++++++-.. -++.-=-|  .++.+ ++++|-.+.++..+.+.-.
T Consensus       233 GF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~--DpDt~llfLaGKG~~~l~~lE~~d~  295 (1012)
T KOG1445|consen  233 GFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLY--DPDTRLLFLAGKGTNKLFMLEMQDR  295 (1012)
T ss_pred             ccchhhheeeeeeeccccCCcceeEEeecccceEeeee--cCCCceEEEecCCcceEEEEEecCC
Confidence            433    5788999764 34554443321 22322233  33444 4566777888888776543

>KOG1272|consensus

Probab=99.70  E-value=4.8e-17  Score=129.12  Aligned_cols=200  Identities=19%  Similarity=0.241  Sum_probs=165.4

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH   98 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h   98 (229)
                      +.+.|.-+|.+|+.|+.-|+|-.+|+.++++...+.. ...|..+.|..+.+++|++- ..-+.|||- .|..++.++.|
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~  209 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRH  209 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhhc
Confidence            5678889999999999999999999999988766544 34699999999999998874 344788884 56788888876


Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCce
Q psy4653          99 SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN  178 (229)
Q Consensus        99 ~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  178 (229)
                       ..|..+.|-|-.-+|++++..|.++.-|+..+..+.. +....+.+..+..+|. +..+-.|...|++.+|.....+++
T Consensus       210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-IRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             -CchhhhcccchhheeeecccCCceEEEeechhhhhHH-HHccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchH
Confidence             4689999999988999999999999999987744333 2233455666777885 568889999999999999999999


Q ss_pred             EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       179 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ..+.+|..+|.++++.  .++.|++|.+.|..++|||+++...+.++.
T Consensus       287 vKiLcH~g~V~siAv~--~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVD--RGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             HHHHhcCCCcceEEEC--CCCcEEeecccccceeEeeeccccccceee
Confidence            9999999999999994  466799999999999999999877665543

>KOG1334|consensus

Probab=99.69  E-value=1.3e-16  Score=127.29  Aligned_cols=224  Identities=24%  Similarity=0.347  Sum_probs=160.8

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCC--CCEEEEEeCCC
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPR--KNWIVTGSDDM   79 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~sg~~d~   79 (229)
                      .|+.+..+|.+|..+|+.+.|+..|..|++|+.|..|.+||+.+++....|. +|...|....|.|.  .+.+++.+.||
T Consensus       130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            4677888999999999999999999999999999999999999988876664 56677877888884  46799999999


Q ss_pred             eEEEEECC-Ccc--eEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeee-ee-ccee---eEEEEEE
Q psy4653          80 QVCVFNYN-TLE--RFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQV-FE-GHTH---YVMQIVI  150 (229)
Q Consensus        80 ~i~iwd~~-~~~--~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~-~~-~~~~---~v~~~~~  150 (229)
                      ++++=.+- ++.  .+..+..|.+.|.-++.-|..++ |.+++.|+.+.-.|++........ .. .+..   ..+.++.
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            99987653 322  24556779999999999998874 789999999999998654221111 11 1111   2344455


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCC--------------------------------------------------------
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGS--------------------------------------------------------  174 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~--------------------------------------------------------  174 (229)
                      +|....+++.|+.|-.+++||.+.                                                        
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence            554444555555555555555432                                                        


Q ss_pred             C----------CceE-EEecCC--CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         175 A----------SPNF-TLEGHE--KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       175 ~----------~~~~-~~~~h~--~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +          ..+. .+++|.  ..|..+-|+ ++...|+++||.=|-|-||+-++++.|+.+++
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf-GPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg  434 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF-GPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG  434 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccccceeeec-cCccceEEecCccceEEEEecchhHHHHHhhc
Confidence            1          0011 245664  346666664 56677999999999999999999988877665

>KOG1310|consensus

Probab=99.67  E-value=2e-16  Score=128.13  Aligned_cols=166  Identities=21%  Similarity=0.331  Sum_probs=131.1

Q ss_pred             EEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe-ccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEe
Q psy4653          51 KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF-EAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWN  127 (229)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd  127 (229)
                      ..+.+|...|.|+.|+.+|.+|++|+.|-.+.|||+-..|.++.+ .+|.+-|.+++|-|.  ..++++|..|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            345678889999999999999999999999999998877777665 579999999999985  45789999999999999


Q ss_pred             cCC---------ceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-c---------eEEEecCCCce
Q psy4653         128 WEK---------AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-P---------NFTLEGHEKGV  188 (229)
Q Consensus       128 ~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~---------~~~~~~h~~~v  188 (229)
                      +..         .......+.+|...|..++..|..+..|.+++.||+|+-+|++... +         +..+...--..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            974         2222344667888888888888777999999999999999998632 1         11111222345


Q ss_pred             EEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         189 NCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       189 ~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      .|+++++. +..+|+.|+.|--.++||.+
T Consensus       204 k~ltisp~-rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  204 KCLTISPS-RPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeecCC-CCceEEecCCCchhhhhhhh
Confidence            67787654 34589999999999999953

>KOG0642|consensus

Probab=99.67  E-value=2.3e-15  Score=122.05  Aligned_cols=176  Identities=18%  Similarity=0.269  Sum_probs=138.8

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC----------CeEEEEEecCcCeEEEEEcCCCCEEEEEeC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN----------QNVKSFEVCDLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      --+|.+|..+|-|++..+.+..+++|+.||+|+.|++...          .....+.+|.+.+..+.+++....|++++.
T Consensus       337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~  416 (577)
T KOG0642|consen  337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS  416 (577)
T ss_pred             eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence            3458899999999999999999999999999999976421          123456788899999999999999999999


Q ss_pred             CCeEEEEECCCcce--------------------------------------------EEEeccC-------CCceeEEE
Q psy4653          78 DMQVCVFNYNTLER--------------------------------------------FHSFEAH-------SDYVRCVA  106 (229)
Q Consensus        78 d~~i~iwd~~~~~~--------------------------------------------~~~~~~h-------~~~i~~v~  106 (229)
                      ||++++|++.....                                            +..+...       ...++-+.
T Consensus       417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV  496 (577)
T KOG0642|consen  417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV  496 (577)
T ss_pred             CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence            99999998642211                                            0000000       12356788


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC
Q psy4653         107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE  185 (229)
Q Consensus       107 ~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~  185 (229)
                      .+|+..+.+++..|+.|+++|...+ .+......|...++++++.| ++.+|++++.|+++++|.+....++.....|.
T Consensus       497 s~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  497 SHPTADITFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             ecCCCCeeEecccCCceeccccccc-ccchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeecccccc
Confidence            8999999999999999999998766 44455567888899999998 68899999999999999987666655555554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=8.2e-14  Score=103.61  Aligned_cols=152  Identities=18%  Similarity=0.329  Sum_probs=108.1

Q ss_pred             EEEEEccCCCeEEEEEe----------cCeEEEEEcCC-CCeEEEEEec-CcCeEEEEEcCCCCEEEE--EeCCCeEEEE
Q psy4653          19 KCCDLHPTEPWMLASLY----------NGHVHVWNHET-NQNVKSFEVC-DLPVRAAKFVPRKNWIVT--GSDDMQVCVF   84 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~----------dg~v~~wd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~s--g~~d~~i~iw   84 (229)
                      ..+.|+|+|..|+.-..          -+...+|.++. ......+... +.+|..+.|+|+++.+++  |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45689999998877543          23456666633 2334444433 346999999999997654  4456799999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC---CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD---MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d---~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      |++ ++.+..+.  ...++.+.|+|+|++++.++.+   |.+.+||+++...+ ..+  ....+..+.|+| ++.+|+++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~~--~~~~~t~~~WsP-dGr~~~ta  161 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-STF--EHSDATDVEWSP-DGRYLATA  161 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-ecc--ccCcEEEEEEcC-CCCEEEEE
Confidence            997 56666664  4677899999999999988644   67999999865332 222  233478899999 78999988


Q ss_pred             EC------CCcEEEEeCCCCCce
Q psy4653         162 SL------DRTVKVWQLGSASPN  178 (229)
Q Consensus       162 ~~------d~~i~~wd~~~~~~~  178 (229)
                      ..      |..++||++. ++.+
T Consensus       162 ~t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             EeccceeccccEEEEEec-CeEe
Confidence            64      7888999884 4433

>KOG2394|consensus

Probab=99.65  E-value=6e-15  Score=119.26  Aligned_cols=168  Identities=16%  Similarity=0.275  Sum_probs=129.0

Q ss_pred             cCCCeEEEEEecCeEEEEEcCCCCeEEEEE----ecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----------
Q psy4653          25 PTEPWMLASLYNGHVHVWNHETNQNVKSFE----VCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNT-----------   88 (229)
Q Consensus        25 p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~-----------   88 (229)
                      |++-.|+.|=.-|.|++.|....+..+.|.    ..+..++|+.|.|.+ ..++++-.+|.+.++|.+-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            566688999889999999887633333222    123579999999954 5677788999999986531           


Q ss_pred             ---cc--------------eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653          89 ---LE--------------RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        89 ---~~--------------~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                         +.              ++..+.-.++.|+.++|+||+++|++.+.||.+||||.... .+..+++.--+...++.|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEc
Confidence               00              01111122456889999999999999999999999998765 3344444445678999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEE
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  194 (229)
                      | |++++++|+.|--+.+|.+...+.+..-++|...|..++|.
T Consensus       342 P-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  342 P-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             C-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            9 79999999999999999998888888888999999999986

>KOG1587|consensus

Probab=99.65  E-value=2.6e-14  Score=120.06  Aligned_cols=209  Identities=17%  Similarity=0.264  Sum_probs=152.3

Q ss_pred             hhhcccCCCceEEEEEccCCCe--EEEEEecCeEEEEEcCCCCe------EEEEE------ecCcCeEEEEEcCC-CCEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPW--MLASLYNGHVHVWNHETNQN------VKSFE------VCDLPVRAAKFVPR-KNWI   72 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~--l~~~~~dg~v~~wd~~~~~~------~~~~~------~~~~~v~~~~~~~~-~~~l   72 (229)
                      ......|.++|..+.|-.+-..  +++++.||.|..|+++--..      .....      .....++++.|.+. .+.+
T Consensus       284 s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F  363 (555)
T KOG1587|consen  284 SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF  363 (555)
T ss_pred             ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence            3445678999999999765544  99999999999998764221      01111      11235899999885 5689


Q ss_pred             EEEeCCCeEEEEE---CCCcc-----eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee
Q psy4653          73 VTGSDDMQVCVFN---YNTLE-----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY  144 (229)
Q Consensus        73 ~sg~~d~~i~iwd---~~~~~-----~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~  144 (229)
                      +.|+..|.|.-=+   ...+.     ....+..|.+.|.++.++|=...++.++.|..|+||...-...+...+..+..+
T Consensus       364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~  443 (555)
T KOG1587|consen  364 IVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY  443 (555)
T ss_pred             EEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce
Confidence            9999999876522   22222     123455678899999999977765555559999999987333455556677888


Q ss_pred             EEEEEEcCCCCCEEEEEECCCcEEEEeCCC--CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         145 VMQIVINPKDNNTFASASLDRTVKVWQLGS--ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       145 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ++.++|+|.-...|+++..||.|.+||+..  ..|.....-+......+.+  +.++.+|+.|...|.+.+|++..
T Consensus       444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~--s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW--SPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec--CCCCcEEEEecCCCcEEEEEcCc
Confidence            999999998888999999999999999864  3466555555444455555  44567899999999999999853

>KOG2110|consensus

Probab=99.64  E-value=3e-13  Score=105.00  Aligned_cols=175  Identities=10%  Similarity=0.238  Sum_probs=133.4

Q ss_pred             eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec---cCCCceeEEEEcCCCCEE
Q psy4653          38 HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE---AHSDYVRCVAVHPTQPFL  114 (229)
Q Consensus        38 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~v~~~~~~~~~  114 (229)
                      .+++.+.+.+..+..+. ...+|.++.++.  +.|++.-.+. |.|+|+++++.++.+.   .+...+.++.+++...++
T Consensus        69 ~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl  144 (391)
T KOG2110|consen   69 KLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL  144 (391)
T ss_pred             eEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence            47777777666665543 345788888885  3455554444 9999999999987764   345567778888777788


Q ss_pred             EEE--eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC-cEEEEeCCCCCceEEEecCC--CceE
Q psy4653         115 LTS--SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR-TVKVWQLGSASPNFTLEGHE--KGVN  189 (229)
Q Consensus       115 ~s~--~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~h~--~~v~  189 (229)
                      +--  -..|.|.|||+.+... ...+..|.+.+.+++|++ +|.+|||+|..| .||++....+..+++++--.  ..+.
T Consensus       145 Ayp~s~t~GdV~l~d~~nl~~-v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~Iy  222 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTINLQP-VNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIY  222 (391)
T ss_pred             EecCCCCCceEEEEEccccee-eeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEE
Confidence            733  3468999999987644 455679999999999998 799999999777 57999999999998886433  3467


Q ss_pred             EEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       190 ~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +++|  +++.++|++.|..++|.+|.+..-.
T Consensus       223 SL~F--s~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  223 SLSF--SPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEE--CCCCCeEEEecCCCeEEEEEecccc
Confidence            7888  4566799999999999999987543

>KOG0974|consensus

Probab=99.64  E-value=1.4e-14  Score=124.76  Aligned_cols=192  Identities=15%  Similarity=0.221  Sum_probs=151.5

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEe
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFHSF   95 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~   95 (229)
                      ..+.-+...++.++.++.+.+||...+.........+    ....-+-++++.-++++|+.-+.|.+|+..- .++. .+
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l  171 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RL  171 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-ee
Confidence            4555566778888999999999998876655543322    1234445667777999999999999999762 2233 57


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                      .+|.+.|-.+.++.++.++++.|.|+++|+|++++.+......-+|+..+.+..+.|.   .++|++.|.+.++|+.. +
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~-~  247 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN-G  247 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc-c
Confidence            8999999999999999999999999999999999876655455689999999999872   99999999999999664 3


Q ss_pred             CceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         176 SPNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       176 ~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ..+.++++|. ..+..+++  ..+..++.|++.|+.+++||..+.
T Consensus       248 ~~l~~y~~h~g~~iw~~~~--~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  248 TQLEVYDEHSGKGIWKIAV--PIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ceehhhhhhhhcceeEEEE--cCCceEEEeeccCcchhhhhhhcc
Confidence            3344777775 45777777  345568899999999999998764

>KOG2110|consensus

Probab=99.63  E-value=1.4e-12  Score=101.35  Aligned_cols=155  Identities=14%  Similarity=0.236  Sum_probs=119.8

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec---CcCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCcc
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC---DLPVRAAKFVPRKNWIVTGS--DDMQVCVFNYNTLE   90 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~   90 (229)
                      .+|.++.++-+  .|++.-.+ .|.|+|+++.+.+.++...   ...+.++.+++.+.+|+-=+  ..|.|.+||..+-+
T Consensus        88 t~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            35666666633  35555544 4999999999998877644   23466666666667776543  35899999999999


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEeCCCc-EEEEecCCceeeeeeeecc-eeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML-IKLWNWEKAWACQQVFEGH-THYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~-v~lwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      .+..+.+|.+.+-|++|+++|.+++|+|..|+ |||+.+.++.+......|. ...|++++|+| +..+|.+.|..++|.
T Consensus       165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVH  243 (391)
T KOG2110|consen  165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVH  243 (391)
T ss_pred             eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEE
Confidence            99999999999999999999999999999987 6899998875544433333 23478999998 677888888999999


Q ss_pred             EEeCCC
Q psy4653         169 VWQLGS  174 (229)
Q Consensus       169 ~wd~~~  174 (229)
                      ++.+..
T Consensus       244 iFKL~~  249 (391)
T KOG2110|consen  244 IFKLEK  249 (391)
T ss_pred             EEEecc
Confidence            998754

>KOG1523|consensus

Probab=99.62  E-value=5.2e-14  Score=107.36  Aligned_cols=207  Identities=15%  Similarity=0.186  Sum_probs=149.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC-CCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE-TNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      +..++++.|...|++++|+|..+.+++++.|..-++|... .++  +...+..++..++++.|+|.++.+|+|+.-..|.
T Consensus        46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is  125 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS  125 (361)
T ss_pred             eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence            4556788999999999999999999999999999999984 443  3334456778899999999999999999999999


Q ss_pred             EEECCCcceE----EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEec-----CCcee------------eeeeeecc
Q psy4653          83 VFNYNTLERF----HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW-----EKAWA------------CQQVFEGH  141 (229)
Q Consensus        83 iwd~~~~~~~----~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~-----~~~~~------------~~~~~~~~  141 (229)
                      +|-++....-    +.-+.+...|.+++|||+.-++++|+.|++.+++..     ++...            .+..+...
T Consensus       126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~  205 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS  205 (361)
T ss_pred             EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence            9977643321    112445678999999999999999999999999973     11100            01112234


Q ss_pred             eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       142 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      .+.+..+.|+| ++..|+-.+.|..+.+-|..... ....+....-+..++.|...   +.++.+++|..=.++..
T Consensus       206 ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise---~~vv~ag~~c~P~lf~~  277 (361)
T KOG1523|consen  206 GGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE---NSVVAAGYDCGPVLFVT  277 (361)
T ss_pred             CCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC---CceeecCCCCCceEEEe
Confidence            57799999998 68999999999999999986554 22222222245556666422   13555555544444333

>KOG1064|consensus

Probab=99.62  E-value=2.6e-15  Score=135.19  Aligned_cols=198  Identities=18%  Similarity=0.315  Sum_probs=161.2

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      -+-..|.++.-||..++-++|+.||.|++|....++.+..++.. +..|+.+.|+.+|+.+..+..||.+.+|.+. .++
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence            34557889999999999999999999999999999988877643 4568999999999999999999999999887 467


Q ss_pred             EEEeccCCCceeEEEEcCCCCEEEEE---eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQPFLLTS---SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~~~~s~---~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ....++|......+.|-.  ..++++   +.++.+.+||.........+..+|.+..+++++-|. ..+|+|||.+|.++
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~-~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK-HQLLISGGRKGEVC 2361 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc-ceEEEecCCcCcEE
Confidence            778889998888888776  455554   446889999975544444455789999999999994 67999999999999


Q ss_pred             EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +||++..+.++.++.       ++     ...++.+|+..|.|+||++.....+.++.
T Consensus      2362 l~D~rqrql~h~~~~-------~~-----~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA-------LD-----TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             EeehHHHHHHHHhhh-------hh-----hhheeeccCcccceEEEEccccchhhcCc
Confidence            999987766555543       11     23479999999999999999887776654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.62  E-value=7.5e-13  Score=106.75  Aligned_cols=197  Identities=13%  Similarity=0.255  Sum_probs=127.5

Q ss_pred             ceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCC-e---EEEEEecCcCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCcc
Q psy4653          17 RVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQ-N---VKSFEVCDLPVRAAKFVPRKNWIVTG-SDDMQVCVFNYNTLE   90 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~~i~iwd~~~~~   90 (229)
                      ....+.|+|+++.++++. .++.|.+|++.+.. .   +..+. ......++.++|++++++++ ..++.|.+||+++..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            457899999999999887 48999999997432 2   22221 22346778899999987554 556899999997643


Q ss_pred             eEEE-----ec-cCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecCCc--e-eeeeeeecc------eeeEEEEEEcCCC
Q psy4653          91 RFHS-----FE-AHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEKA--W-ACQQVFEGH------THYVMQIVINPKD  154 (229)
Q Consensus        91 ~~~~-----~~-~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~~--~-~~~~~~~~~------~~~v~~~~~~~~~  154 (229)
                      .+..     .. ........+.|+|++++++++.. +++|.+|+++..  . .........      ......+.++| +
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-d  238 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-D  238 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-C
Confidence            3321     11 01233568999999999887766 899999999632  1 111111111      11223577888 5


Q ss_pred             CCEEEEEE-CCCcEEEEeCCCCCceEEEecCC---CceEEEEEEeCCCcCEEEEee-CCCeEEEEECC
Q psy4653         155 NNTFASAS-LDRTVKVWQLGSASPNFTLEGHE---KGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQ  217 (229)
Q Consensus       155 ~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~  217 (229)
                      +.+++++. .++.|.+|++........+.++.   .....+.+  ++++++|+++. .+++|.+|+++
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~--~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI--DHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEE--CCCCCEEEEEEccCCcEEEEEEc
Confidence            77777664 57899999986543333333321   12345566  44566777655 48999999874

>KOG3881|consensus

Probab=99.61  E-value=2.1e-13  Score=106.55  Aligned_cols=204  Identities=12%  Similarity=0.175  Sum_probs=152.3

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe----EEEEEecCcCeEEEEEcCCC-CEEEEEeCC--CeEEEEEC
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRK-NWIVTGSDD--MQVCVFNY   86 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d--~~i~iwd~   86 (229)
                      .+.+|..+...  ...|+++..+|.+++|..+.+..    +..+.. ...+..+.-.+.. ..+++|+..  ..+.|||+
T Consensus       104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeec
Confidence            34444444433  33578888899999999996542    222222 2356667667654 456668888  78999999


Q ss_pred             CCcceEEEeccCC-C--------ceeEEEEcCC--CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          87 NTLERFHSFEAHS-D--------YVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        87 ~~~~~~~~~~~h~-~--------~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      +..+.+.+.+.-. +        -++.+.|-+.  ...|++++.-+++++||.+.+..+...|.-...+++++...| ++
T Consensus       181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~g  259 (412)
T KOG3881|consen  181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SG  259 (412)
T ss_pred             ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CC
Confidence            9887666544321 1        1467888887  678999999999999999876666666666677889998888 68


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceEE-EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         156 NTFASASLDRTVKVWQLGSASPNFT-LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      +.+.+|..-+.+..+|.+.++.... +++-.+++.++...  +..++|++++-|+.|||+|+++.+.+.
T Consensus       260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h--p~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH--PTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             cEEEEecccchhheecccCceeeccccCCccCCcceEEEc--CCCceEEeeccceeEEEeecccchhhh
Confidence            8999999999999999998876555 67777888888874  456799999999999999999866543

>KOG1524|consensus

Probab=99.61  E-value=2.8e-14  Score=115.57  Aligned_cols=215  Identities=20%  Similarity=0.209  Sum_probs=145.8

Q ss_pred             CCccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEE-cC-------CCCEE
Q psy4653           1 MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF-VP-------RKNWI   72 (229)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l   72 (229)
                      |-.++...++-. |+..|.|+.|+.....++++..+-.++-||+.+. .......-++-+....+ -+       ....+
T Consensus         1 mklk~~~~~k~r-~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~   78 (737)
T KOG1524|consen    1 MKLKTRICKKNR-NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTL   78 (737)
T ss_pred             Cccchhhhhccc-cceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceE
Confidence            344554555443 7888999999988887777665555555665442 21211111111111111 11       12468


Q ss_pred             EEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcC
Q psy4653          73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP  152 (229)
Q Consensus        73 ~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~  152 (229)
                      +.++.||++.|.+- .++.-+...+|.+.|.|-.|+|+|.-+++++.||.|++|.-...  .+.+......+|++++|.|
T Consensus        79 ~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   79 LICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             EEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEECC
Confidence            88899999998763 34444667899999999999999999999999999999985332  2233333456799999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       153 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ..+..+.+.+.  .+.+=-+.....+...+.|.+-|.+++|.+  ...+++||++|-..++||.. |.++.+-
T Consensus       156 ~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~--~s~lI~sgGED~kfKvWD~~-G~~Lf~S  223 (737)
T KOG1524|consen  156 NSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWST--QSNIIASGGEDFRFKIWDAQ-GANLFTS  223 (737)
T ss_pred             CCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCc--cccceeecCCceeEEeeccc-CcccccC
Confidence            87777776554  444444555555566789999999999954  45589999999999999976 3344433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.59  E-value=2.9e-12  Score=103.32  Aligned_cols=198  Identities=12%  Similarity=0.084  Sum_probs=128.3

Q ss_pred             CCceEEEEEccCCCeEEEEE-ecCeEEEEEcCC-CCe--EEEEEecCcCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCc
Q psy4653          15 SDRVKCCDLHPTEPWMLASL-YNGHVHVWNHET-NQN--VKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQVCVFNYNTL   89 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~   89 (229)
                      ......+.++|++++|++++ .++.|.+|++.. ++.  +.... .......+.|+|++++|++++. ++.|.+|+++..
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            35677889999999998875 578999999973 332  12221 2234678999999998887764 789999998642


Q ss_pred             c----eEEEeccCCCceeEEEEcCCCCEEEE-EeCCCcEEEEecCCceeeee------eeecceeeEEEEEEcCCCCCEE
Q psy4653          90 E----RFHSFEAHSDYVRCVAVHPTQPFLLT-SSDDMLIKLWNWEKAWACQQ------VFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        90 ~----~~~~~~~h~~~i~~v~~~~~~~~~~s-~~~d~~v~lwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      .    .+..+. +.....+++++|+++++++ ...+++|.+||+.....+..      .... ......+.|+| ++.++
T Consensus       113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~p-dg~~l  189 (330)
T PRK11028        113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHP-NQQYA  189 (330)
T ss_pred             CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECC-CCCEE
Confidence            2    222222 2234567899999998754 45569999999975322210      1111 12245678898 67777


Q ss_pred             EEEE-CCCcEEEEeCCC--CC--ceEEEecCCC------ceEEEEEEeCCCcCEEEEee-CCCeEEEEECCC
Q psy4653         159 ASAS-LDRTVKVWQLGS--AS--PNFTLEGHEK------GVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQN  218 (229)
Q Consensus       159 ~s~~-~d~~i~~wd~~~--~~--~~~~~~~h~~------~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~  218 (229)
                      +++. .+++|.+|++..  ++  .+..+..+..      ....+.+  .+++++|+++. .++.|.+|++.+
T Consensus       190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~--~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI--TPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE--CCCCCEEEEecCCCCeEEEEEEeC
Confidence            6665 489999999973  22  2222322111      1224556  44666777764 578999999854

>KOG1517|consensus

Probab=99.58  E-value=2.6e-13  Score=117.55  Aligned_cols=201  Identities=13%  Similarity=0.247  Sum_probs=139.8

Q ss_pred             CceEEEEEcc--CCCeEEEEEecCeEEEEEcCCC-----CeEEEEEec-------CcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653          16 DRVKCCDLHP--TEPWMLASLYNGHVHVWNHETN-----QNVKSFEVC-------DLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus        16 ~~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~-----~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      .+|..+.+-.  |...+++++.||.|+||+-...     +.+..+..-       ...-.-++|.....+|++++.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4788888754  3568888999999999985322     333333221       1112445676665566666678899


Q ss_pred             EEEECCCcceEEEecc-CCCceeEEEEc-CCCCEEEEEeCCCcEEEEecCCcee--eeeeeecceee--EEEEEEcCCCC
Q psy4653          82 CVFNYNTLERFHSFEA-HSDYVRCVAVH-PTQPFLLTSSDDMLIKLWNWEKAWA--CQQVFEGHTHY--VMQIVINPKDN  155 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~-h~~~i~~v~~~-~~~~~~~s~~~d~~v~lwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~  155 (229)
                      +|||....+.+..+.. ....|+++.-+ +.+.+++.|-.||+|++||.+-...  ...+...|...  |..+.+.+..-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            9999987766665533 33456766543 4578999999999999999865433  44556677766  88888887433


Q ss_pred             CEEEEEECCCcEEEEeCCCCC--ceEEEecCC--C-ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         156 NTFASASLDRTVKVWQLGSAS--PNFTLEGHE--K-GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~--~-~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ..++||+.||.|++||++...  ....+..|.  + .+.++..+.  ...++|+|+. +.|+||+....
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~--hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE--HAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc--CCCeeeecCc-ceEEEEecChh
Confidence            469999999999999998742  223344443  3 377777643  4458999998 99999998744

>KOG0771|consensus

Probab=99.58  E-value=3.8e-14  Score=111.47  Aligned_cols=170  Identities=17%  Similarity=0.162  Sum_probs=129.3

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcCCC---CE--EEEE
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVPRK---NW--IVTG   75 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~---~~--l~sg   75 (229)
                      |.|+.......|...|.++.|+||++.|++-+.| ...+|+++++..+....  ..+.....+.|+.++   .+  ++..
T Consensus       174 Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~  252 (398)
T KOG0771|consen  174 PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ  252 (398)
T ss_pred             CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEec
Confidence            5566667778899999999999999999999999 99999999996655443  123346778888766   33  3333


Q ss_pred             eCCCeEEEEECCCcce-----EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEE
Q psy4653          76 SDDMQVCVFNYNTLER-----FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVI  150 (229)
Q Consensus        76 ~~d~~i~iwd~~~~~~-----~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~  150 (229)
                      ..-+.|+.||+...+.     .++.-.-.+.|++++++++|++++.|+.||.|.+++..+......+.+.|...|+.+.|
T Consensus       253 ~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF  332 (398)
T KOG0771|consen  253 FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF  332 (398)
T ss_pred             CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE
Confidence            3345677766543221     12222223579999999999999999999999999998776666777889999999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      +| +..++++-+.|.++.+..+..
T Consensus       333 ~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  333 SP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cC-CcCcccccccCCceeEEEEee
Confidence            99 567888899999999987643

>KOG2321|consensus

Probab=99.58  E-value=1.1e-13  Score=112.81  Aligned_cols=195  Identities=11%  Similarity=0.132  Sum_probs=149.6

Q ss_pred             EEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec---
Q psy4653          20 CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE---   96 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~---   96 (229)
                      .+++|.-...|+.++....|.-.|++.|.-+.-|.....++.++..++...+|++|+.+|.+-.||..+...+..+.   
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            44555444456666667788889999999988888877899999999999999999999999999998765554432   


Q ss_pred             ---cCCC-----ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC-CEEEEEECCCcE
Q psy4653          97 ---AHSD-----YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTV  167 (229)
Q Consensus        97 ---~h~~-----~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i  167 (229)
                         .|..     .|+++.|+.+|-.+++|+.+|.|.+||++...+....-.+-.-+|..+.|.+.+. ..++| .....+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~  296 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRIL  296 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHh
Confidence               2322     4999999999999999999999999999876554444444456788888876433 34544 446689


Q ss_pred             EEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ++||-.++++...++.-. .++.+++.+  +..++++|-.+..+..|=+-.
T Consensus       297 kiWd~~~Gk~~asiEpt~-~lND~C~~p--~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  297 KIWDECTGKPMASIEPTS-DLNDFCFVP--GSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             hhcccccCCceeeccccC-CcCceeeec--CCceEEEecCCCcceeEEccc
Confidence            999999999888777643 488888765  345899999998887776543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=1.1e-12  Score=97.64  Aligned_cols=157  Identities=18%  Similarity=0.244  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCEEEEEeC----------CCeEEEEECCC-cceEEEecc-CCCceeEEEEcCCCCEEEE--EeCCCcEEE
Q psy4653          60 VRAAKFVPRKNWIVTGSD----------DMQVCVFNYNT-LERFHSFEA-HSDYVRCVAVHPTQPFLLT--SSDDMLIKL  125 (229)
Q Consensus        60 v~~~~~~~~~~~l~sg~~----------d~~i~iwd~~~-~~~~~~~~~-h~~~i~~v~~~~~~~~~~s--~~~d~~v~l  125 (229)
                      -..+.|+|+|++|+.-..          -+...+|.++. ......+.- ..+.|..++|+|++..|+.  |..+..|.+
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            356788999987654433          12355555422 223333332 2346999999999998654  445689999


Q ss_pred             EecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEE
Q psy4653         126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL  202 (229)
Q Consensus       126 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  202 (229)
                      ||++ ... ...+  +..++..+.|+| +|.+++.|+.+   |.+.+||.+..+.+...+ | ..+..++|  ++++++|
T Consensus        88 yd~~-~~~-i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~W--sPdGr~~  158 (194)
T PF08662_consen   88 YDVK-GKK-IFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEW--SPDGRYL  158 (194)
T ss_pred             EcCc-ccE-eEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEE--cCCCCEE
Confidence            9996 222 2223  345678899999 68899988754   569999999776655443 2 34667777  4567788


Q ss_pred             EEeeC------CCeEEEEECCCCeEEEeec
Q psy4653         203 ISGAD------DRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       203 ~s~s~------d~~i~iwd~~~~~~~~~~~  226 (229)
                      ++++.      |+.++||++. |+.+....
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEeccceeccccEEEEEec-CeEeEecc
Confidence            88764      7889999996 66665543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.4e-12  Score=108.57  Aligned_cols=206  Identities=13%  Similarity=0.088  Sum_probs=128.8

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEec---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYN---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFN   85 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd   85 (229)
                      .+..+...+.+.+|+|+++.++.++.+   ..|.+||+.+++.... ......+.+..|+|+|+.|+ +.+.++...||.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            355677789999999999998887643   4699999998876433 33334567899999999776 567777766665


Q ss_pred             --CCCcceEEEeccCCCceeEEEEcCCCCEEEEEe-CCCcEEEEecC--CceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          86 --YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        86 --~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                        .+++. ...+..+........|+|+++.++..+ .++...+|.+.  ........+.+  .......|+| ++..++.
T Consensus       269 ~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~Sp-DG~~Ia~  344 (427)
T PRK02889        269 VNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--SYNTSPRISP-DGKLLAY  344 (427)
T ss_pred             EECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--CCcCceEECC-CCCEEEE
Confidence              44433 455555555566789999999776444 45666677653  32211122222  2334567898 6788876


Q ss_pred             EECCC---cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-Ce--EEEEECCCCeEEEee
Q psy4653         161 ASLDR---TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-RL--VKIWDYQNKTCVQTL  225 (229)
Q Consensus       161 ~~~d~---~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-~~--i~iwd~~~~~~~~~~  225 (229)
                      .+.++   .|.+||+.++... .+... .......|.  +++..|+.++.+ |.  +.+-+.. +.....+
T Consensus       345 ~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~s--pdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l  410 (427)
T PRK02889        345 ISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFA--PNGRYILYATQQGGRSVLAAVSSD-GRIKQRL  410 (427)
T ss_pred             EEccCCcEEEEEEECCCCCeE-EccCC-CCccCceEC--CCCCEEEEEEecCCCEEEEEEECC-CCceEEe
Confidence            66544   6999999876543 23222 223455664  455556555543 33  4455553 4444444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.4e-12  Score=107.23  Aligned_cols=207  Identities=9%  Similarity=0.022  Sum_probs=131.5

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEe---cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEE-eCCC--eEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLY---NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG-SDDM--QVCV   83 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~--~i~i   83 (229)
                      .+..+...+.+.+|+|||+.|+..+.   +..+.+||+.+++.... ......+....|+|+|+.|+.. +.+|  .|.+
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence            34455668899999999998887653   45799999998865332 2223345678999999987754 4444  5888


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeC-CCcEEEE--ecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-DMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ||+++++.. .+..+...+....|+|+++.++..+. ++...||  |+..+.. ..+ ...........|+| ++..++.
T Consensus       272 ~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l-t~~~~~~~~~~~Sp-DG~~Ia~  347 (429)
T PRK03629        272 MDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRI-TWEGSQNQDADVSS-DGKFMVM  347 (429)
T ss_pred             EECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEe-ecCCCCccCEEECC-CCCEEEE
Confidence            999877653 33334456788999999998765554 4444444  5554322 222 22233345678898 6777776


Q ss_pred             EECC---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCe---EEEEECCCCeEEEeec
Q psy4653         161 ASLD---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL---VKIWDYQNKTCVQTLE  226 (229)
Q Consensus       161 ~~~d---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~---i~iwd~~~~~~~~~~~  226 (229)
                      .+.+   ..|.+||+.++.. ..+... .......|  ++++.+|+.++.++.   +.++++. +.....+.
T Consensus       348 ~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~--SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~  414 (429)
T PRK03629        348 VSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSI--APNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP  414 (429)
T ss_pred             EEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceE--CCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence            5533   3588899877653 233321 11233456  456777888777664   6777774 43445454

>KOG3881|consensus

Probab=99.57  E-value=1.5e-13  Score=107.31  Aligned_cols=163  Identities=15%  Similarity=0.221  Sum_probs=134.4

Q ss_pred             CceEEEEEccCCCeEEE-EEec--CeEEEEEcCCCCeEEEEEecC---------cCeEEEEEcCC--CCEEEEEeCCCeE
Q psy4653          16 DRVKCCDLHPTEPWMLA-SLYN--GHVHVWNHETNQNVKSFEVCD---------LPVRAAKFVPR--KNWIVTGSDDMQV   81 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~-~~~d--g~v~~wd~~~~~~~~~~~~~~---------~~v~~~~~~~~--~~~l~sg~~d~~i   81 (229)
                      .++..+.-+|..+.+++ |+..  +.+.+||++..+.+..-+.-.         --++.+.|.+.  ...||+++.-+++
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            57778888888777777 7777  889999999985544322111         12578889887  7889999999999


Q ss_pred             EEEECCCcc-eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          82 CVFNYNTLE-RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        82 ~iwd~~~~~-~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ++||+..+. ++.++.--+..|+++...|.++++++|..-+.+..||++........+.+-.+.+..+..+| +..++++
T Consensus       229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las  307 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLAS  307 (412)
T ss_pred             EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEe
Confidence            999998654 67788777889999999999999999999999999999988666666788888999999998 5789999


Q ss_pred             EECCCcEEEEeCCCCCceE
Q psy4653         161 ASLDRTVKVWQLGSASPNF  179 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~  179 (229)
                      +|.|+.+|++|.++.+++.
T Consensus       308 ~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  308 CGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             eccceeEEEeecccchhhh
Confidence            9999999999998865543

>KOG1409|consensus

Probab=99.57  E-value=2.3e-13  Score=104.86  Aligned_cols=168  Identities=17%  Similarity=0.340  Sum_probs=131.9

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      .||.+.+.+..|-.+|..+-|+-...++++.+.|+.+.---.+++..+..|.... ....+.|.-.  +...|...|+|.
T Consensus       102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~d~~--~~fvGd~~gqvt  178 (404)
T KOG1409|consen  102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQFDAL--YAFVGDHSGQIT  178 (404)
T ss_pred             hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec-cCCCCceeeE--EEEecccccceE
Confidence            4678889999999999999999999999999999999966677777666554332 1122222211  566777777776


Q ss_pred             EEEC--CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          83 VFNY--NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        83 iwd~--~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      +-.+  +.-..+..+.+|.+.+.+++|.+....+.++..|.++.+||+...........+|.+.|..+..-+ ....+.|
T Consensus       179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S  257 (404)
T KOG1409|consen  179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLIS  257 (404)
T ss_pred             EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeee
Confidence            6654  444567888999999999999999999999999999999999877666777788888887776544 3568889


Q ss_pred             EECCCcEEEEeCCC
Q psy4653         161 ASLDRTVKVWQLGS  174 (229)
Q Consensus       161 ~~~d~~i~~wd~~~  174 (229)
                      ++.|+.|-+|+++.
T Consensus       258 ~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  258 CGEDGGIVVWNMNV  271 (404)
T ss_pred             ccCCCeEEEEeccc
Confidence            99999999999863

>KOG1963|consensus

Probab=99.57  E-value=1.1e-12  Score=111.52  Aligned_cols=205  Identities=19%  Similarity=0.309  Sum_probs=142.1

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      +.=|.++|.+++|+++|.+|++|+..|-+.+|...+++ .+.++.-..++..+.++|++++.+....|++|.+....+++
T Consensus       247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             EEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            55688999999999999999999999999999999998 56667777899999999999998888999999998765543


Q ss_pred             eEEEec-----------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee------------------------
Q psy4653          91 RFHSFE-----------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ------------------------  135 (229)
Q Consensus        91 ~~~~~~-----------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~------------------------  135 (229)
                      ....+.           ..++..+.+.++|.-..++-.+..+.|.+||+.+.....                        
T Consensus       326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~  405 (792)
T KOG1963|consen  326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA  405 (792)
T ss_pred             hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh
Confidence            322211           123445677777755556666667777777754321110                        


Q ss_pred             -------------------------------------------eeeecceee-EEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653         136 -------------------------------------------QVFEGHTHY-VMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus       136 -------------------------------------------~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                                                                 .+...|... +..+..++.....+++++.|+.+++|-
T Consensus       406 ~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~  485 (792)
T KOG1963|consen  406 RSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWV  485 (792)
T ss_pred             hhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEE
Confidence                                                       001123222 222233333334889999999999998


Q ss_pred             CCCCC------ceEEE----ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         172 LGSAS------PNFTL----EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       172 ~~~~~------~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +...+      ..+..    .-|..++.+.+|.  .++ -+++.+.|++|.+||+.+.
T Consensus       486 ~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs--~dG-slla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  486 FTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS--QDG-SLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             EecccccCcCccceEEeeeeccccCcccchhhc--CCC-cEEEEecCCEEEEecCCCh
Confidence            84322      11211    2356677888884  445 3777888899999999883

>KOG1963|consensus

Probab=99.56  E-value=1.6e-12  Score=110.54  Aligned_cols=115  Identities=15%  Similarity=0.276  Sum_probs=98.5

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC--C--CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET--N--QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      .|+-.++|.++||.++++++|..||.|.+|.-..  +  .....+..|..+|.++.|+++|-+|++|+..+.+.+|..++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4666789999999999999999999999998655  2  23456677888999999999999999999999999999998


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEec
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW  128 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~  128 (229)
                      +++ +-+..-.+.|..+.++|++.+.+....|++|.+-..
T Consensus       283 ~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  283 GKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             CCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            872 334445678999999999999999999999988765

>KOG1409|consensus

Probab=99.56  E-value=2.9e-13  Score=104.34  Aligned_cols=212  Identities=22%  Similarity=0.419  Sum_probs=162.6

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-CCeEE-EEEecCcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-NQNVK-SFEVCDLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      |..+.+++.||.+.|++...-|..+-+++.+.|.++++|--+. ++--. .+..-..+++++.+.++-..|++|-..|++
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence            3456778999999999999999999999999999999996544 22211 122234679999999999999999999998


Q ss_pred             EEEE----CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC---------------------------
Q psy4653          82 CVFN----YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---------------------------  130 (229)
Q Consensus        82 ~iwd----~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~---------------------------  130 (229)
                      .-+-    .+.+...+.+..|..++..+-|+-....+++.+.|..+. |-.-+                           
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvG  171 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVG  171 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEec
Confidence            8874    345556677888999999999988777777777776653 32100                           


Q ss_pred             --------------ceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEEecCCCceEEEEEEe
Q psy4653         131 --------------AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYH  195 (229)
Q Consensus       131 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~  195 (229)
                                    .-.+...+.+|...+.+..|.+. ..++.||..|..+.+||+...+ ...++.+|...|..+.+..
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ  250 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence                          01112335678889999999984 6799999999999999996544 3567788988888877643


Q ss_pred             CCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         196 GGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       196 ~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                        ....|.+++.||.|.+||++..
T Consensus       251 --~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  251 --HTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             --hheeeeeccCCCeEEEEeccce
Confidence              3346999999999999999754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3.2e-12  Score=106.73  Aligned_cols=207  Identities=14%  Similarity=0.100  Sum_probs=131.9

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEe---cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCC--eEE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLY---NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDM--QVC   82 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~   82 (229)
                      +.+..+...+.+..|+|+++.++.++.   ...|.+||+.+++.... ........+..|+|+|+.|+ +.+.+|  .|.
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            345666778999999999999888764   34799999998876433 22333456789999998765 445555  589


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe-CCCc--EEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDML--IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~--v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      +||+++++. ..+..+.......+|+|+++.++..+ .++.  |.++|+..+......+.  ........|+| ++..++
T Consensus       276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~Sp-DG~~Ia  351 (433)
T PRK04922        276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ--GNYNARASVSP-DGKKIA  351 (433)
T ss_pred             EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC--CCCccCEEECC-CCCEEE
Confidence            999987654 44555555556789999999877555 4454  66666654422122222  23344678998 677777


Q ss_pred             EEECCC---cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeC---CCeEEEEECCCCeEEEee
Q psy4653         160 SASLDR---TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       160 s~~~d~---~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~  225 (229)
                      ..+.++   .|.+||+.++... .+. +........|  ++++++|+..+.   ...+.+++...+ ..+.+
T Consensus       352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~--spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l  418 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSF--APNGSMVLYATREGGRGVLAAVSTDGR-VRQRL  418 (433)
T ss_pred             EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceE--CCCCCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence            654332   6999999776543 332 2222334466  445665555444   245777888644 34444

>KOG4227|consensus

Probab=99.56  E-value=1.1e-12  Score=103.01  Aligned_cols=202  Identities=17%  Similarity=0.209  Sum_probs=145.6

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC--cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD--LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-   90 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-   90 (229)
                      |-..|.|++|+-....+++|..+++|.+.|+++.+.+..+...+  ..|..+..+|..+.|++.+.++.+.+||..... 
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence            44689999999999999999999999999999999888875433  379999999999999999999999999986543 


Q ss_pred             e--EEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeee--------------------------------
Q psy4653          91 R--FHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQ--------------------------------  135 (229)
Q Consensus        91 ~--~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~--------------------------------  135 (229)
                      .  +-...........+-|+|..+ ++++.+..+-+.+||.+......                                
T Consensus       184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence            2  122233345567889999876 56788888999999975421100                                


Q ss_pred             -----eeeecce--eeEEEEEEcC--------------CCCCEEEEEECCCcEEEEeCCCC-------------------
Q psy4653         136 -----QVFEGHT--HYVMQIVINP--------------KDNNTFASASLDRTVKVWQLGSA-------------------  175 (229)
Q Consensus       136 -----~~~~~~~--~~v~~~~~~~--------------~~~~~l~s~~~d~~i~~wd~~~~-------------------  175 (229)
                           ..+.-|.  .+|.+..-+|              .+...++||+.+-.|.+|.+...                   
T Consensus       264 R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~  343 (609)
T KOG4227|consen  264 RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE  343 (609)
T ss_pred             ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence                 0001111  1111111111              12345899999999999987421                   


Q ss_pred             ----CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         176 ----SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       176 ----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                          +.+..+++|..-++.+.|.+  ...+|++.+..+.++||.-.
T Consensus       344 ~~i~~~~~VLrGHRSv~NQVRF~~--H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  344 IFIEKELTVLRGHRSVPNQVRFSQ--HNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             heecceeEEEecccccccceeecC--CcceEeccchhhheeccccc
Confidence                23456789998889999954  44578888889999999753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=6.6e-12  Score=104.96  Aligned_cols=204  Identities=13%  Similarity=0.033  Sum_probs=133.2

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEe---cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCe--EE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLY---NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQ--VC   82 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~--i~   82 (229)
                      +.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+......+....|+|+|+.|+ +.+.++.  |.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            446677889999999999998888763   468999999988763 3344455677889999998765 5555654  77


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe-CCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      +||+++++. ..+..+........|+|+++.++..+ .++  .|.++|+.... ...+.. +........|+| ++..++
T Consensus       274 ~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~-~~~~~~~~~~Sp-dG~~ia  349 (435)
T PRK05137        274 TMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISF-GGGRYSTPVWSP-RGDLIA  349 (435)
T ss_pred             EEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeec-CCCcccCeEECC-CCCEEE
Confidence            778877654 44555555667899999999877555 333  67788876542 233322 233455678998 677777


Q ss_pred             EEECC---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeC-C-----CeEEEEECCCCeE
Q psy4653         160 SASLD---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD-D-----RLVKIWDYQNKTC  221 (229)
Q Consensus       160 s~~~d---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d-----~~i~iwd~~~~~~  221 (229)
                      ..+.+   ..|.+||+..+. ...+.. ...+....|.  ++++.|+..+. .     ..+.+.|+..++.
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~s--pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWA--PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeEC--CCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            65533   368888875443 223322 2234556774  45555544333 2     3577888876544

>KOG2321|consensus

Probab=99.53  E-value=2.1e-12  Score=105.59  Aligned_cols=221  Identities=16%  Similarity=0.254  Sum_probs=153.7

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCe----------EEEE------------------E
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQN----------VKSF------------------E   54 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~----------~~~~------------------~   54 (229)
                      |+++-+.|. |...-+.+..+|||++++|++ +.-.|++||+..-.+          +...                  .
T Consensus        41 rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   41 RIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             HHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence            445555454 777778999999999988855 788999999875211          1110                  0


Q ss_pred             ecC-----------cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcE
Q psy4653          55 VCD-----------LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI  123 (229)
Q Consensus        55 ~~~-----------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v  123 (229)
                      .|.           ..-..++++....-|..++....|.=++++.|.-+..++...+.++++..++...++++|+.+|.|
T Consensus       120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence            010           011223333222224444455556666888998888888888899999999999999999999999


Q ss_pred             EEEecCCceeeeeee-----ecce-----eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cCCCceEEEE
Q psy4653         124 KLWNWEKAWACQQVF-----EGHT-----HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVD  192 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~-----~~~~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~  192 (229)
                      -.||.+....+..+-     ..|.     ..|+.+.|+. ++..++.|..+|.+.+||+++.+|+..-. +..-++..++
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            999987543332221     1222     2388999975 68899999999999999999999876542 2345688899


Q ss_pred             EEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       193 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      |...++++.|+|.. ...++|||-.+|+....++.
T Consensus       279 ~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  279 WQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             ccccCCCceEEecc-hHHhhhcccccCCceeeccc
Confidence            97765555665433 35689999999887666553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.5e-12  Score=107.25  Aligned_cols=175  Identities=15%  Similarity=0.147  Sum_probs=115.9

Q ss_pred             cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCcce--EEEeccCCCceeEEEEcCC
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYNTLER--FHSFEAHSDYVRCVAVHPT  110 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~--~~~~~~h~~~i~~v~~~~~  110 (229)
                      +..|.+||..... ...+..+...+.+..|+|+|+.|+..+.+   ..|.+||+++++.  +..+.+|   ...++|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            4689999987655 34455566789999999999999887654   3699999987753  3333333   347899999


Q ss_pred             CCEEEEE-eCCCcEEEE--ecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE-ECCCcEEEEeCCCCCceEEEecCCC
Q psy4653         111 QPFLLTS-SDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA-SLDRTVKVWQLGSASPNFTLEGHEK  186 (229)
Q Consensus       111 ~~~~~s~-~~d~~v~lw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~h~~  186 (229)
                      ++.++.+ +.++.+.||  |+... . ...+..+...+....|+| ++..|+.. ..++...+|++...........+..
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGG-T-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCC-C-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC
Confidence            9988765 467876665  55433 2 233344555677889998 56765544 4678889998754322112223332


Q ss_pred             ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       187 ~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                        ....|  ++++..|+..+.++ +.+||+.+++..
T Consensus       336 --~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~  366 (429)
T PRK01742        336 --YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTE  366 (429)
T ss_pred             --CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence              34556  44666777777665 556999888654

>KOG0644|consensus

Probab=99.50  E-value=5.2e-14  Score=119.15  Aligned_cols=208  Identities=19%  Similarity=0.246  Sum_probs=149.8

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      ....||+..+..++.+-....+++++.|.-|++|.+.++.++..+.+|..+|+++.|+|-.    +.+.||.+++||..-
T Consensus       226 As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~  301 (1113)
T KOG0644|consen  226 ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL  301 (1113)
T ss_pred             ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc
Confidence            3478999999999999999899999999999999999999999999999999999999944    778999999999761


Q ss_pred             cce--------------EEE---------e-------ccCCCceeEEEEcCCCCEEEEEe-----------CCCcEEEEe
Q psy4653          89 LER--------------FHS---------F-------EAHSDYVRCVAVHPTQPFLLTSS-----------DDMLIKLWN  127 (229)
Q Consensus        89 ~~~--------------~~~---------~-------~~h~~~i~~v~~~~~~~~~~s~~-----------~d~~v~lwd  127 (229)
                      .-.              ...         +       .+..-.+.+++|....-.+++.+           .+..+++|+
T Consensus       302 ~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn  381 (1113)
T KOG0644|consen  302 EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWN  381 (1113)
T ss_pred             cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeee
Confidence            000              000         0       00011123444444433444443           344566777


Q ss_pred             cCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE-ecCCCceEEEEEEeCCCcCEEEEee
Q psy4653         128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                      +..+ .......+|..+++.+.++|.+..+..+++.||.+.+||+..+.+++.. .+|.. +..-.|++  +++.++..-
T Consensus       382 l~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k-l~d~kFSq--dgts~~lsd  457 (1113)
T KOG0644|consen  382 LYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK-LVDGKFSQ--DGTSIALSD  457 (1113)
T ss_pred             cccc-hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce-eeccccCC--CCceEecCC
Confidence            7655 3455667889999999999999888999999999999999988887655 44544 44446744  444455555


Q ss_pred             CCCeEEEEECCCCeEEEe
Q psy4653         207 DDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       207 ~d~~i~iwd~~~~~~~~~  224 (229)
                      .-|.+.|...-.++....
T Consensus       458 ~hgql~i~g~gqs~s~k~  475 (1113)
T KOG0644|consen  458 DHGQLYILGTGQSKSQKK  475 (1113)
T ss_pred             CCCceEEeccCCCccccc
Confidence            557888887766655443

>KOG2111|consensus

Probab=99.49  E-value=4.3e-11  Score=91.60  Aligned_cols=175  Identities=12%  Similarity=0.267  Sum_probs=127.9

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CcceEEEeccCC--CceeEEEEcCCCCE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN-TLERFHSFEAHS--DYVRCVAVHPTQPF  113 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~--~~i~~v~~~~~~~~  113 (229)
                      +.|.|||=...+++..+.. ..+|.++.+.++  .|++. ..+.|.+|... .-+.++.+....  ..+.+++=+-+..+
T Consensus        75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            6799999777777777654 458999999864  35554 46779999886 445555544322  23333333333345


Q ss_pred             EEEEe-CCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCCCCCEEEEEECCC-cEEEEeCCCCCceEEEecC--CCce
Q psy4653         114 LLTSS-DDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPKDNNTFASASLDR-TVKVWQLGSASPNFTLEGH--EKGV  188 (229)
Q Consensus       114 ~~s~~-~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~h--~~~v  188 (229)
                      ++-.| .-|+|+|-|+..... .......|...|.++.++- +|.++||+|..| -||+||..++.++.+++--  .+.+
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i  229 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI  229 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence            55443 348999999865433 2466788999999999986 799999999887 5799999999999888642  4568


Q ss_pred             EEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         189 NCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       189 ~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .|++|+  ++..+|+.+|+-|++.||.++-
T Consensus       230 y~iaFS--p~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  230 YCIAFS--PNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEeC--CCccEEEEEcCCCeEEEEEeec
Confidence            999995  4667999999999999999864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=2.5e-11  Score=98.86  Aligned_cols=220  Identities=14%  Similarity=0.161  Sum_probs=137.3

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFN   85 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd   85 (229)
                      +..++......-..+.|+||++++++.+.||.|.++|+.+.+.+..++... ....+.++++|++++++. ..+.+.++|
T Consensus        28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D  106 (369)
T PF02239_consen   28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID  106 (369)
T ss_dssp             EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence            344455433333457899999999999999999999999999999987765 468899999999988776 578999999


Q ss_pred             CCCcceEEEeccC-------CCceeEEEEcCCCCEEEEE-eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653          86 YNTLERFHSFEAH-------SDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT  157 (229)
Q Consensus        86 ~~~~~~~~~~~~h-------~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (229)
                      .++.+.++.+...       ..++.++..+|..+.++.. -..+.|.+-|..+...................|+| ++.+
T Consensus       107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry  185 (369)
T PF02239_consen  107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRY  185 (369)
T ss_dssp             TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSE
T ss_pred             cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccce
Confidence            9999988776432       3467888888988866555 44588988887665333322222333456678888 5677


Q ss_pred             EEEE-ECCCcEEEEeCCCCCceEEEec----CCCceEEE-------EEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         158 FASA-SLDRTVKVWQLGSASPNFTLEG----HEKGVNCV-------DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       158 l~s~-~~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~-------~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ++.+ .....|-++|.++.+....+..    |......+       -|...+.+...++.-....+.+||..+.+.++++
T Consensus       186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I  265 (369)
T PF02239_consen  186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI  265 (369)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred             eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence            6554 5677999999988766554432    22222211       1222222223333334446778999999999988


Q ss_pred             ccC
Q psy4653         226 ESG  228 (229)
Q Consensus       226 ~~~  228 (229)
                      +..
T Consensus       266 ~~~  268 (369)
T PF02239_consen  266 PTQ  268 (369)
T ss_dssp             E-S
T ss_pred             ECC
Confidence            753

...

>KOG4547|consensus

Probab=99.48  E-value=1.7e-11  Score=100.41  Aligned_cols=191  Identities=18%  Similarity=0.271  Sum_probs=148.8

Q ss_pred             ccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec---CcCeEEEEE------cC--------------CCCEEEEEeCCCe
Q psy4653          24 HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC---DLPVRAAKF------VP--------------RKNWIVTGSDDMQ   80 (229)
Q Consensus        24 ~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~sg~~d~~   80 (229)
                      .|...++|....||.+++||+.+++....|.-.   .....+..|      +|              +...|+-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            355677888889999999999998876655321   122333333      22              1246788889999


Q ss_pred             EEEEECCCcceEEEe--ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          81 VCVFNYNTLERFHSF--EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        81 i~iwd~~~~~~~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      |.++++..++....+  ..|-+.|+++.++.+-..|.+++.|+.+.+|+.... ...+.+.+....+..++++| |+.++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~-D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISP-DGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcC-CCCEE
Confidence            999999988876665  468899999999999889999999999999998765 55666777777788899998 68899


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCC---cC-EEEEeeCCCeEEEEECCC
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD---KP-YLISGADDRLVKIWDYQN  218 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~-~l~s~s~d~~i~iwd~~~  218 (229)
                      ++|+.  .|++||+.+.+.+..+.+|..+|.++.|....+   +. +|.++..+..|.+|-.+.
T Consensus       160 ~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            88774  799999999999999999999999999965411   23 455666778889998765

>KOG2139|consensus

Probab=99.46  E-value=5.1e-11  Score=92.72  Aligned_cols=203  Identities=11%  Similarity=0.096  Sum_probs=134.3

Q ss_pred             cccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .+|| .+|.+++|++||..|++++ .|.+|.|||..++..+......-..+.-+.|+|++.+|.+++-|+..++|+....
T Consensus       192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~  270 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS  270 (445)
T ss_pred             CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence            6788 6999999999999999988 5779999999998776554444557889999999999999999999999965543


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCcee------------eeee--------eec---ceeeE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWA------------CQQV--------FEG---HTHYV  145 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~------------~~~~--------~~~---~~~~v  145 (229)
                      ..........++|..-+|+|.|..++ +.+.  +-++|.+.-..+            ..-+        ..+   -.+..
T Consensus       271 wt~erw~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgea  348 (445)
T KOG2139|consen  271 WTKERWILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEA  348 (445)
T ss_pred             ceecceeccCCceeeeeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcc
Confidence            33222233445899999999999754 4433  334554421100            0000        001   12456


Q ss_pred             EEEEEcCCCCCEEEEEECCCc--------EEEEeCCCCCceEEE-ecC--CCceEEEEEEeCC-CcCEEEEeeCCCeEEE
Q psy4653         146 MQIVINPKDNNTFASASLDRT--------VKVWQLGSASPNFTL-EGH--EKGVNCVDYYHGG-DKPYLISGADDRLVKI  213 (229)
Q Consensus       146 ~~~~~~~~~~~~l~s~~~d~~--------i~~wd~~~~~~~~~~-~~h--~~~v~~~~~~~~~-~~~~l~s~s~d~~i~i  213 (229)
                      -+++|.| .|.+|+.--..+.        |..||.+..-+..-. .+.  ......+.|.+.. ++.+|..|-..|.|.-
T Consensus       349 q~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~  427 (445)
T KOG2139|consen  349 QCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQR  427 (445)
T ss_pred             ceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEe
Confidence            7899998 6889987665543        667776544332211 121  1123445554432 3457777888888887


Q ss_pred             EECC
Q psy4653         214 WDYQ  217 (229)
Q Consensus       214 wd~~  217 (229)
                      |++.
T Consensus       428 ypl~  431 (445)
T KOG2139|consen  428 YPLT  431 (445)
T ss_pred             eeeE
Confidence            7764

>KOG1354|consensus

Probab=99.46  E-value=1.9e-12  Score=99.93  Aligned_cols=211  Identities=17%  Similarity=0.285  Sum_probs=146.4

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-----eEEEEEecC------------cCeEEEEEcCCCC--EEEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-----NVKSFEVCD------------LPVRAAKFVPRKN--WIVT   74 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~s   74 (229)
                      ..+-+.++.|...|.+|++|..+|.|.++.-....     ....++.|+            ..|..+.|.++++  .++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            35678999999999999999999999998754322     222333332            3588899998765  5677


Q ss_pred             EeCCCeEEEEECCCcc--e---------------------------------EEEe-ccCCCceeEEEEcCCCCEEEEEe
Q psy4653          75 GSDDMQVCVFNYNTLE--R---------------------------------FHSF-EAHSDYVRCVAVHPTQPFLLTSS  118 (229)
Q Consensus        75 g~~d~~i~iwd~~~~~--~---------------------------------~~~~-~~h~~~i~~v~~~~~~~~~~s~~  118 (229)
                      .+.|..|++|.+....  .                                 .+.+ .+|.--|+++.++.|+..++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            7899999999763210  0                                 0111 24556688999999998888774


Q ss_pred             CCCcEEEEecCCceeeeeee-------ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC------CceEEEec--
Q psy4653         119 DDMLIKLWNWEKAWACQQVF-------EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA------SPNFTLEG--  183 (229)
Q Consensus       119 ~d~~v~lwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~--  183 (229)
                       |-.|.+|+++...+...+.       +.-..-|+...|+|.....|+-.+..|+|++.|++..      ..+++.+.  
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence             7789999987543332221       1113446777899988889999999999999999853      22222221  


Q ss_pred             --------CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC-CCCeEEEeeccC
Q psy4653         184 --------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY-QNKTCVQTLESG  228 (229)
Q Consensus       184 --------h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~~~~  228 (229)
                              -...|..+.|.+  +++|++|-.. -+|++||+ ...+++.+++-|
T Consensus       263 ~~rsffseiIsSISDvKFs~--sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSH--SGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             cchhhHHHHhhhhhceEEcc--CCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence                    123467788865  4568887665 58999999 456677777654

>KOG1272|consensus

Probab=99.46  E-value=1.3e-13  Score=109.82  Aligned_cols=151  Identities=19%  Similarity=0.245  Sum_probs=127.3

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      .+|..+.|=|-.=.|++++..|.++--|+.+|+.+..+......+..+.-+|-.-.+-+|...|+|.+|.++..+++..+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            57888999998877888889999999999999999888877788999999998889999999999999999999999889


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      .+|.+.|.++++.++|.+++|++.|..++|||++...++......  .+...+.++  +..+|| .+....+.+|.
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~S--qkglLA-~~~G~~v~iw~  360 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLS--QKGLLA-LSYGDHVQIWK  360 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC--CCccccccc--ccccee-eecCCeeeeeh
Confidence            999999999999999999999999999999999876554444332  334556665  334555 56666899994

>KOG0974|consensus

Probab=99.45  E-value=1.4e-12  Score=112.70  Aligned_cols=149  Identities=16%  Similarity=0.255  Sum_probs=123.9

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE-EeccCC
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH-SFEAHS   99 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~   99 (229)
                      +.++++.-++++|+..+.|.+|+....+....+.+|+..+..+.++-+|.++++.|+|+++++|++++.+.+. .--+|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            3457777789999999999999997433333567899999999999999999999999999999999987665 445799


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-EEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         100 DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-VMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       100 ~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      .+|..+.|+|.  .++|++.|-+.++|+....  ...++.+|... +..++..+ ..-..+|++.|+.+++||+..
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEecccc--eehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence            99999999998  9999999999999987543  23477777544 78888876 567889999999999999854

>KOG0280|consensus

Probab=99.45  E-value=5.2e-11  Score=90.28  Aligned_cols=195  Identities=12%  Similarity=0.121  Sum_probs=135.4

Q ss_pred             CeEEEEEe------------cCeEEEEEcCCCCeEE--EEE-ecCcCeEEEEEcC---CCC-EEEEEeCCCeEEEEECCC
Q psy4653          28 PWMLASLY------------NGHVHVWNHETNQNVK--SFE-VCDLPVRAAKFVP---RKN-WIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        28 ~~l~~~~~------------dg~v~~wd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~sg~~d~~i~iwd~~~   88 (229)
                      +.|++|+.            .|.+.+++++..+.+.  .+. .....+..+.|..   +|. .|+-+..+|+|.++....
T Consensus        25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~  104 (339)
T KOG0280|consen   25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE  104 (339)
T ss_pred             ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecc
Confidence            37777763            3568888888765533  111 1123455566653   344 677788899999997654


Q ss_pred             cceEEEecc------CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          89 LERFHSFEA------HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        89 ~~~~~~~~~------h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      ......+.+      ......++.|++.+..++++-.+|.+.+-+.... -...+..+.|.-......|+..+++++.+|
T Consensus       105 ~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytG  184 (339)
T KOG0280|consen  105 DESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG  184 (339)
T ss_pred             ceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEec
Confidence            333222221      1112457899999999999999999985554332 112236788988888899988888999999


Q ss_pred             ECCCcEEEEeCCC-CCceEE-EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC-CeEEE
Q psy4653         162 SLDRTVKVWQLGS-ASPNFT-LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQ  223 (229)
Q Consensus       162 ~~d~~i~~wd~~~-~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~  223 (229)
                      +.|+.+..||++. .+.++. .+-|..+|.+|.-++ +...+++||+.|-.|++||.|+ ++++.
T Consensus       185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             CCCceEEEEEecCCcceeeecceeeecceEEEecCC-CCCceEEEeccccceeeeehhcccCccc
Confidence            9999999999993 344444 456888898887643 4566999999999999999985 55554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=1.8e-10  Score=95.86  Aligned_cols=208  Identities=12%  Similarity=0.077  Sum_probs=131.0

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEec---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCC--eEE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYN---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDM--QVC   82 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~   82 (229)
                      +.+..+...+...+|+|+++.|+.+...   ..|.+||+.+++.... ......+.+..|+|+++.|+ +.+.++  .|.
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            3455566678999999999999887644   4799999998865433 23344567789999998765 444444  588


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeC-CC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-DM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      +||+++++. ..+..+........|+|+++.++..+. ++  .|.++|+..... .. +..+........|+| ++.+++
T Consensus       262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~-l~~~~~~~~~~~~sp-dg~~i~  337 (417)
T TIGR02800       262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RR-LTFRGGYNASPSWSP-DGDLIA  337 (417)
T ss_pred             EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE-eecCCCCccCeEECC-CCCEEE
Confidence            889887654 334344444557799999998765543 33  577778765432 22 222344566778998 577877


Q ss_pred             EEECCC---cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC---eEEEEECCCCeEEEeec
Q psy4653         160 SASLDR---TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       160 s~~~d~---~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~  226 (229)
                      ..+.+.   .|.+||+.++.. ..+.... ......|.  +++..|+..+.++   .+.+.+.. ++....++
T Consensus       338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~p~~s--pdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDESPSFA--PNGRMILYATTRGGRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             EEEccCCceEEEEEeCCCCCe-EEccCCC-CCCCceEC--CCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence            777665   788888876433 2232221 22334553  4555666555443   35555544 44445444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1538|consensus

Probab=99.45  E-value=7.5e-13  Score=110.03  Aligned_cols=151  Identities=17%  Similarity=0.279  Sum_probs=118.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q psy4653          59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF  138 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~  138 (229)
                      .|..++|.|+|..|+.+. +..+.+||++.|..+..+++|.+-|.|++|+.+|+.|++|+.|+.|.+|+-+-..   ...
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILK   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---eee
Confidence            688999999999877764 5568999999999999999999999999999999999999999999999864331   222


Q ss_pred             ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       139 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ..|...|-++.|+|. ...++|++.. ..-+|.....    ....|...+.++.+++..++++++-|-.||+|.|=+...
T Consensus        90 YSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK----~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQK----SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG  163 (1081)
T ss_pred             eccCCeeeEeecCch-HHHhhhcchh-hccccChhhh----hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence            458889999999995 5688887754 3567765322    233444445555555567888999999999999987654


Q ss_pred             C
Q psy4653         219 K  219 (229)
Q Consensus       219 ~  219 (229)
                      +
T Consensus       164 E  164 (1081)
T KOG1538|consen  164 E  164 (1081)
T ss_pred             C
Confidence            3

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.45  E-value=2.8e-10  Score=92.71  Aligned_cols=195  Identities=15%  Similarity=0.175  Sum_probs=129.5

Q ss_pred             eEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEE
Q psy4653          29 WMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV  107 (229)
Q Consensus        29 ~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~  107 (229)
                      ++++ -..+|+|.+.|..+.+.+..+.........+.|+|+++++.+.+.||.|.++|+.+.+.+..++... .-.++++
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~   85 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAV   85 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEE
Confidence            3433 4578999999999999999988655444567899999999999999999999999999988887654 3578999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEecCCceeeeeeeec------ceeeEEEEEEcCCCCCEEEEEEC-CCcEEEEeCCCCCceE
Q psy4653         108 HPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEG------HTHYVMQIVINPKDNNTFASASL-DRTVKVWQLGSASPNF  179 (229)
Q Consensus       108 ~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~  179 (229)
                      +++|++++++. .++.+.++|.++.+....+..+      ....+..+.-+|. ...++..-. -+.|.+-|.....++.
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEEEccCCeEEEEEeccccccc
Confidence            99999988664 6899999998876554443322      1234556666664 455555554 4788888877665443


Q ss_pred             EE-ecCCCceEEEEEEeCCCcCEEEE-eeCCCeEEEEECCCCeEEEeecc
Q psy4653         180 TL-EGHEKGVNCVDYYHGGDKPYLIS-GADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       180 ~~-~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .- ..-........|  .+++++++. ...+..|-++|.++++.+..++.
T Consensus       165 ~~~i~~g~~~~D~~~--dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~  212 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGF--DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT  212 (369)
T ss_dssp             EEEEE--TTEEEEEE---TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred             eeeeccccccccccc--CcccceeeecccccceeEEEeeccceEEEEeec
Confidence            22 222334556666  446666554 55678999999999988776653

...

>KOG0280|consensus

Probab=99.44  E-value=6.3e-12  Score=95.18  Aligned_cols=199  Identities=15%  Similarity=0.143  Sum_probs=137.5

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE--EEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECC-CcceEE
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK--SFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYN-TLERFH   93 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~-~~~~~~   93 (229)
                      --++.|++.+.-++++-.+|.+.+-+........  .++.|+.++....|+.. .+++.+|+.|+.+..||++ ..+.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            3577899999999999999999966655554443  67788888888999864 5789999999999999998 444443


Q ss_pred             E-eccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          94 S-FEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        94 ~-~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      . .+.|...|.++.-+|. ..++++|+.|-.|++||.++..++...- .-.+.|..+..+|.....++.++.=.-.++-+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence            3 5678889999998865 5589999999999999998654432211 12367899999886554444445444466666


Q ss_pred             CCCCCc-----eEEEecCCCceEEEEEEeCCCcCEEEEee-CCCeEE-EEECCCC
Q psy4653         172 LGSASP-----NFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDRLVK-IWDYQNK  219 (229)
Q Consensus       172 ~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~-iwd~~~~  219 (229)
                      ......     ......|..-...-+|..  ....|+|++ .|+.++ +|---++
T Consensus       283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~--~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDS--KDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ecccccchheeeeccccccceeecccccc--ccceeeeeeccccceeeeeeeccC
Confidence            543321     122234554445555522  124688876 688865 7765444

>KOG2139|consensus

Probab=99.44  E-value=8.7e-11  Score=91.46  Aligned_cols=200  Identities=14%  Similarity=0.214  Sum_probs=131.1

Q ss_pred             CCceEEEEEccCCC-eEEEEEecCeEEEEEcCCC----Ce----------EEEEEecCcCeEEEEEcCCCCEEEEEeC-C
Q psy4653          15 SDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETN----QN----------VKSFEVCDLPVRAAKFVPRKNWIVTGSD-D   78 (229)
Q Consensus        15 ~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d   78 (229)
                      ...|.|++|-|-+. -|+.|+ -+-|.+|.....    ..          +...++| .+|+++.|+++|..|++++- |
T Consensus       140 QrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            35799999999754 555566 466888987532    11          1111223 57999999999999999885 4


Q ss_pred             CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      .+|.|||+.++..+--..-.-+.++-+.|||++.+++.+..|+..++|+..+.+..++-.- ..+.|....|+|....+|
T Consensus       218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEE
Confidence            5899999988765433223456788999999999999999999999998776665544333 344788999999544455


Q ss_pred             EEEECCCcEEEEeCCCCCce-------------EEEe------cC---CCceEEEEEEeCCCcCEEEEeeCCCe------
Q psy4653         159 ASASLDRTVKVWQLGSASPN-------------FTLE------GH---EKGVNCVDYYHGGDKPYLISGADDRL------  210 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~-------------~~~~------~h---~~~v~~~~~~~~~~~~~l~s~s~d~~------  210 (229)
                      ++.+....+.-..+......             ..+.      +.   -+...+++|.+.  +.+|+.-...+.      
T Consensus       297 f~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps--GeyLav~fKg~~~v~~~k  374 (445)
T KOG2139|consen  297 FACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS--GEYLAVIFKGQSFVLLCK  374 (445)
T ss_pred             EEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC--CCEEEEEEcCCchhhhhh
Confidence            55555444443333221111             0110      10   235778888554  457877554433      


Q ss_pred             --EEEEECCCC
Q psy4653         211 --VKIWDYQNK  219 (229)
Q Consensus       211 --i~iwd~~~~  219 (229)
                        |.+||.+..
T Consensus       375 ~~i~~fdtr~s  385 (445)
T KOG2139|consen  375 LHISRFDTRKS  385 (445)
T ss_pred             hhhhhhccccc
Confidence              666777654

>KOG3914|consensus

Probab=99.42  E-value=3.5e-12  Score=100.08  Aligned_cols=161  Identities=17%  Similarity=0.240  Sum_probs=116.0

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe----EEEEEecCcCeEEEEEcCCCCEEEEE---eCCCeEEEEECCCc
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKNWIVTG---SDDMQVCVFNYNTL   89 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg---~~d~~i~iwd~~~~   89 (229)
                      ......++|+++.++.+..++...++++.....    ...+.. ...-.++.|..+......+   +....+.+|.... 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence            455667889999999888888877777765432    222222 2234445555544443333   4445667776654 


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      .+....-+|...+..|+|+||+++++++..|..|++=......-....+-||...|..+++-+  +..|+|||.|+++++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence            344556689999999999999999999999999999776554444555678999999999864  567899999999999


Q ss_pred             EeCCCCCceEEE
Q psy4653         170 WQLGSASPNFTL  181 (229)
Q Consensus       170 wd~~~~~~~~~~  181 (229)
                      ||+.+++.+.++
T Consensus       220 Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  220 WDITSGKLLDTC  231 (390)
T ss_pred             EecccCCccccc
Confidence            999998776543

>KOG2111|consensus

Probab=99.39  E-value=3.4e-10  Score=86.73  Aligned_cols=204  Identities=13%  Similarity=0.219  Sum_probs=131.1

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCC------CeEEEEECCC
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDD------MQVCVFNYNT   88 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d------~~i~iwd~~~   88 (229)
                      .+..+++|+.|...++++ .|.-++||+.+.-+....-+.......-+...-..|+| ++|+.+      .++.|||-..
T Consensus         6 ~~~lsvs~NQD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVA-TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             CceeEEEEccCCceEEEE-ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence            355669999888755555 46668899988743322211111112222222223443 444443      4799999655


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC-EEEE-EECCCc
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFAS-ASLDRT  166 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s-~~~d~~  166 (229)
                      .+++.++. -..+|.+|.++++.  ++ .-.++.|.||...++.+....++....|---.+..|..+. +||. |-.-|.
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~r--iV-vvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRDR--IV-VVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCCe--EE-EEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            56666665 45789999998863  22 2236799999988665555555433322112223333333 4443 346789


Q ss_pred             EEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCe-EEEEECCCCeEEEeec
Q psy4653         167 VKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL-VKIWDYQNKTCVQTLE  226 (229)
Q Consensus       167 i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~  226 (229)
                      |.+-|+...+.  ...+..|...|.|++..  -++.++||+|..|+ |||||..+|+.++.+-
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln--~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R  221 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALN--LQGTLVATASTKGTLIRIFDTEDGTLLQELR  221 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEc--CCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence            99999976654  57889999999999984  45679999999999 6999999999887753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.1e-09  Score=91.45  Aligned_cols=201  Identities=14%  Similarity=0.086  Sum_probs=123.3

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEec---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCC--eEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYN---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDM--QVCV   83 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i~i   83 (229)
                      .+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++.... ......+....|+|+|+.|+ +.+.++  .|.+
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            355667788999999999999877643   3689999998876433 22333456789999999776 444455  5788


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe-CCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      +|+++++. ..+..+........|+|+++.++..+ .++  .|.++|+..+......+.+  .......|+| ++..++.
T Consensus       272 ~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Sp-dg~~i~~  347 (430)
T PRK00178        272 MDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSA-DGKTLVM  347 (430)
T ss_pred             EECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECC-CCCEEEE
Confidence            89887654 33444555566789999999765444 343  5777777654322222222  2234567888 5677765


Q ss_pred             EEC-CC--cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee-CCC--eEEEEECCCC
Q psy4653         161 ASL-DR--TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDR--LVKIWDYQNK  219 (229)
Q Consensus       161 ~~~-d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~--~i~iwd~~~~  219 (229)
                      .+. ++  .|.++|+.++... .+.. ........|+  +++..++..+ .++  .+.+.+...+
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~s--pdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVA--PNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceEC--CCCCEEEEEEecCCceEEEEEECCCC
Confidence            553 33  5788898776532 2221 1111233564  4555555444 333  4666777543

>KOG1240|consensus

Probab=99.36  E-value=6.3e-11  Score=104.41  Aligned_cols=184  Identities=15%  Similarity=0.166  Sum_probs=129.8

Q ss_pred             EEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCc-------ceEEEeccCCCceeEEEEcCCCCE
Q psy4653          42 WNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNTL-------ERFHSFEAHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        42 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~-------~~~~~~~~h~~~i~~v~~~~~~~~  113 (229)
                      |+.+ |..+..+..|...+..++.+++. .++++||.||+|++||....       .....+..-..++.++...+.+..
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            6555 46667777777778788887765 89999999999999997421       112223334568999999999999


Q ss_pred             EEEEeCCCcEEEEecCCceeee------eeeecc-eeeE-EEEEEcCCCCC-EEEEEECCCcEEEEeCCCCCceEEEec-
Q psy4653         114 LLTSSDDMLIKLWNWEKAWACQ------QVFEGH-THYV-MQIVINPKDNN-TFASASLDRTVKVWQLGSASPNFTLEG-  183 (229)
Q Consensus       114 ~~s~~~d~~v~lwd~~~~~~~~------~~~~~~-~~~v-~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~-  183 (229)
                      ++.++.||.|.+.+++......      +....+ .+.+ .--++...... .++.+..-+.|..||.+.....+.++. 
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999987621111      111111 1222 22223333333 677788889999999988776666543 


Q ss_pred             -CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         184 -HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       184 -h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                       ..+.|.+++..  +.+..++.|..-|.+.+||+|=+..+..++.+
T Consensus      1193 ~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1193 LRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred             ccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCc
Confidence             23568888874  45568999999999999999988888877654

>KOG4714|consensus

Probab=99.36  E-value=6.2e-12  Score=93.81  Aligned_cols=198  Identities=15%  Similarity=0.255  Sum_probs=128.2

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE-EEEEecCcCeEEEEEcCCCCEEEEEe-----CCCeEEEEECC
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPRKNWIVTGS-----DDMQVCVFNYN   87 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~-----~d~~i~iwd~~   87 (229)
                      |+.+=.+-+.+-.+..++.+..||.+.+.+.+.-..+ ...........+.++...++.+.++.     .-+...+|+++
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~  167 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD  167 (319)
T ss_pred             cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccc
Confidence            3333344444444567888899999999998762111 11111112223334444555555543     22345666666


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ..+.+...+...+.|.+++-+|..+ ++++|+.||.+.+||.++...+...+..|+.++..+.|+|.++..|++++.||.
T Consensus       168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs  247 (319)
T KOG4714|consen  168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS  247 (319)
T ss_pred             ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence            5544333222334599999999776 567889999999999988755566678899999999999999999999999999


Q ss_pred             EEEEeCCCC-----------------CceE---EEe----cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         167 VKVWQLGSA-----------------SPNF---TLE----GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       167 i~~wd~~~~-----------------~~~~---~~~----~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      +-.||..+.                 .+..   .+.    .....|+.++.    .+..|++|++-+.|++.+
T Consensus       248 lw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV----~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  248 LWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV----LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec----cCceEEeccccceEEEec
Confidence            999998631                 1111   111    12234555554    244688899888888764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3e-10  Score=94.72  Aligned_cols=180  Identities=12%  Similarity=0.039  Sum_probs=111.6

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~  113 (229)
                      ..|.++|... .....+..+...+.+..|+|+|+.|+..+.+   ..|.+||+.+++... +......+.+..|+|+++.
T Consensus       176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            4677777744 4334444556678999999999998877643   369999998876533 3223345678999999997


Q ss_pred             EE-EEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE-CCCcEEEEeC--CCCCceEEEecCCCceE
Q psy4653         114 LL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS-LDRTVKVWQL--GSASPNFTLEGHEKGVN  189 (229)
Q Consensus       114 ~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~--~~~~~~~~~~~h~~~v~  189 (229)
                      ++ +.+.++...||.++........+..+........|+| ++..++..+ .++...+|.+  .++.. ..+..+.....
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence            75 6677887666664321111222333444455678998 677766555 4566677765  33332 22222222233


Q ss_pred             EEEEEeCCCcCEEEEeeCCC---eEEEEECCCCeEE
Q psy4653         190 CVDYYHGGDKPYLISGADDR---LVKIWDYQNKTCV  222 (229)
Q Consensus       190 ~~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~  222 (229)
                      ..+|  ++++++|+..+.++   .|.+||+.+++..
T Consensus       332 ~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        332 SPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             ceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            4566  44566777666544   6999999887653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2.1e-09  Score=90.02  Aligned_cols=176  Identities=9%  Similarity=0.033  Sum_probs=115.7

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD---DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~  113 (229)
                      ..|.+||...... +.+..+...+.+..|+|+|+.|+..+.   +..|.+||+++++. ..+..+.+.+....|+|+++.
T Consensus       182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence            4788899865443 555566778999999999998887753   45899999988765 334445567778999999987


Q ss_pred             EE-EEeCCCc--EEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-CC--cEEEEeCCCCCceEEEecCCCc
Q psy4653         114 LL-TSSDDML--IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL-DR--TVKVWQLGSASPNFTLEGHEKG  187 (229)
Q Consensus       114 ~~-s~~~d~~--v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~h~~~  187 (229)
                      ++ +.+.++.  |.+||+.... ... +..+........|+| ++..++..+. ++  .|.++|+..+.. ..+..+...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~-~~~-Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGT-TTR-LTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCc-eEE-ccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence            64 5566655  7777886553 222 333444556678998 6777776553 33  577888765543 333333334


Q ss_pred             eEEEEEEeCCCcCEEEEeeCC---CeEEEEECCCCe
Q psy4653         188 VNCVDYYHGGDKPYLISGADD---RLVKIWDYQNKT  220 (229)
Q Consensus       188 v~~~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~  220 (229)
                      .....|+  +++..|+..+.+   ..|.+||...+.
T Consensus       336 ~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        336 YSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             ccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            4556664  455566655433   358888876543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3e-10  Score=94.75  Aligned_cols=172  Identities=12%  Similarity=0.052  Sum_probs=112.8

Q ss_pred             CceEEEEEccCCCeEEEE-EecC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCc
Q psy4653          16 DRVKCCDLHPTEPWMLAS-LYNG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD-MQ--VCVFNYNTL   89 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~-~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-~~--i~iwd~~~~   89 (229)
                      ..+....|+|||+.|+.. ..+|  .|.+||+.+++.... ......+....|+|+|+.|+..+.+ +.  |.++|+.++
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence            345678999999988865 3444  588999998876443 3334467889999999988776654 44  444466665


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCC---CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD---MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d---~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      +. ..+..+........|+|+++.++..+.+   ..|.+||++.+. ...+....  ......|+| ++..++.++.++.
T Consensus       322 ~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~--~~~~p~~Sp-DG~~i~~~s~~~~  396 (429)
T PRK03629        322 AP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTF--LDETPSIAP-NGTMVIYSSSQGM  396 (429)
T ss_pred             Ce-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCC--CCCCceECC-CCCEEEEEEcCCC
Confidence            43 3333333455678999999988765443   358889987653 22222211  233567888 7888888887764


Q ss_pred             ---EEEEeCCCCCceEEEecCCCceEEEEEE
Q psy4653         167 ---VKVWQLGSASPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       167 ---i~~wd~~~~~~~~~~~~h~~~v~~~~~~  194 (229)
                         +.++++. +.....+..|...+...+|.
T Consensus       397 ~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Ws  426 (429)
T PRK03629        397 GSVLNLVSTD-GRFKARLPATDGQVKFPAWS  426 (429)
T ss_pred             ceEEEEEECC-CCCeEECccCCCCcCCcccC
Confidence               5666763 44455666776666666663

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=5.3e-09  Score=87.16  Aligned_cols=209  Identities=13%  Similarity=0.059  Sum_probs=121.4

Q ss_pred             cccCCCceEEEEEccCCCeEE---EEEec--CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CC--e--
Q psy4653          11 LTARSDRVKCCDLHPTEPWML---ASLYN--GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DM--Q--   80 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~---~~~~d--g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~--~--   80 (229)
                      +.........=.|+|||+.++   +...+  ..|.+.++.+++.... ...........|+|+|+.|+..+. +|  .  
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            333344566778999997522   33333  4688888888765333 333444566899999988776543 23  2  


Q ss_pred             EEEEECCCc---ceEEEeccCCCceeEEEEcCCCCEEEEE-eCCCcEEEEe--cCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653          81 VCVFNYNTL---ERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWN--WEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        81 i~iwd~~~~---~~~~~~~~h~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      +.+|++..+   +................|+|+++.++.. ..++...+|.  +.........+..+...+....|+| +
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-D  337 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-D  337 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-C
Confidence            344666542   2222232222344678999999976644 4566555554  4321111222333334566788999 6


Q ss_pred             CCEEEEEECC---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEE-EeeC--CCeEEEEECCCCeEEEe
Q psy4653         155 NNTFASASLD---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI-SGAD--DRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       155 ~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~--d~~i~iwd~~~~~~~~~  224 (229)
                      ++.|+..+.+   ..|.+||+.+++.. .+......+....|.  ++++.|+ ++..  ...|.++|+..++....
T Consensus       338 G~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wS--pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        338 GKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWA--IDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            7777755433   46899999877643 333222344556774  4555444 4433  45688899988765443

>KOG3914|consensus

Probab=99.30  E-value=5e-11  Score=93.70  Aligned_cols=161  Identities=15%  Similarity=0.252  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCcce----EEEeccCCCceeEEEEcCCCCEEE---EEeCCCcEEEEecCCce
Q psy4653          60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLL---TSSDDMLIKLWNWEKAW  132 (229)
Q Consensus        60 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~h~~~i~~v~~~~~~~~~~---s~~~d~~v~lwd~~~~~  132 (229)
                      ...+..++++++||++..+...-++++....+    +..+- -...-+++.|..+.....   .++..+.+.+|....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            44556678899999998888766776643322    21111 112223444544444433   445556666666554  


Q ss_pred             eeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeE
Q psy4653         133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVNCVDYYHGGDKPYLISGADDRLV  211 (229)
Q Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i  211 (229)
                      .......||-+.++.++++| |+..++++..|..||+-.+...-.+..+ -||.+-|..++..   ++..|+|||.|+++
T Consensus       142 ~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~---~~~~LlS~sGD~tl  217 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT---DNYLLLSGSGDKTL  217 (390)
T ss_pred             cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec---cCceeeecCCCCcE
Confidence            33455678999999999998 5689999999999999877655444443 4699889888874   23368999999999


Q ss_pred             EEEECCCCeEEEeecc
Q psy4653         212 KIWDYQNKTCVQTLES  227 (229)
Q Consensus       212 ~iwd~~~~~~~~~~~~  227 (229)
                      ++||+++|+++.+++.
T Consensus       218 r~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  218 RLWDITSGKLLDTCDL  233 (390)
T ss_pred             EEEecccCCcccccch
Confidence            9999999999987764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.4e-09  Score=91.01  Aligned_cols=178  Identities=12%  Similarity=0.018  Sum_probs=113.9

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~  113 (229)
                      ..|.+||...... +.+..+...+.+..|+|+++.|+..+.+   ..|.+||+.+++.. .+........++.|+|+++.
T Consensus       184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence            4689999865443 4445556678999999999998887643   46999999877653 23333444568899999997


Q ss_pred             EE-EEeCCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE-CCCc--EEEEeCCCCCceEEEecCCCc
Q psy4653         114 LL-TSSDDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS-LDRT--VKVWQLGSASPNFTLEGHEKG  187 (229)
Q Consensus       114 ~~-s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~--i~~wd~~~~~~~~~~~~h~~~  187 (229)
                      ++ +.+.++  .|++||+..+. ... +..+........|+| ++..++..+ .++.  |.++|+.+++. ..+..+...
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~-~~~-lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~  337 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQ-LTR-LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY  337 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCC-eEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence            64 555555  59999987653 222 333433445678998 677777655 3444  66666655543 223222223


Q ss_pred             eEEEEEEeCCCcCEEEEeeCC-C--eEEEEECCCCeEE
Q psy4653         188 VNCVDYYHGGDKPYLISGADD-R--LVKIWDYQNKTCV  222 (229)
Q Consensus       188 v~~~~~~~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~  222 (229)
                      ....+|+  +++++|+..+.+ +  .|.+||+.+++..
T Consensus       338 ~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        338 NARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            3356774  455566654433 2  6999999887654

>KOG4497|consensus

Probab=99.29  E-value=1.6e-10  Score=89.16  Aligned_cols=188  Identities=16%  Similarity=0.209  Sum_probs=126.7

Q ss_pred             EEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCcceEEEeccC
Q psy4653          20 CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT-GSDDMQVCVFNYNTLERFHSFEAH   98 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~~~~~~~~~h   98 (229)
                      =++|||+|+++++...- .+.|-|.++-+....|.. -+.|..+.|..+..++++ ...|+.|.+|++..-+-...++..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            35899999999988755 888999998766555433 245778889888766544 467889999999888877788888


Q ss_pred             CCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC--------------
Q psy4653          99 SDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL--------------  163 (229)
Q Consensus        99 ~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--------------  163 (229)
                      ++.+.++.|||+|+ ++.++.-|-.|.+|.+.+..........  ..+..++++| ++.+.+-++.              
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--TNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc--cCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence            88999999999996 5567777899999999765322222222  2245566776 4555443331              


Q ss_pred             ----------------------CCcEEEEeCCCCCceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         164 ----------------------DRTVKVWQLGSASPNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       164 ----------------------d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                                            +..+-+||---.  ...+-.|. -++..+.|+  +.+++|+.|+.|+.+|+-+-
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~~lG~k~v~ws--P~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYERGLGLKFVEWS--PCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeeeccceeEEEec--cccceEEeeccchhhhhhce
Confidence                                  122333332111  11111222 357777874  45669999999999998653

>KOG2695|consensus

Probab=99.28  E-value=2.4e-11  Score=93.99  Aligned_cols=152  Identities=16%  Similarity=0.215  Sum_probs=111.3

Q ss_pred             EEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-----eeeeeeeecceeeEEE
Q psy4653          73 VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-----WACQQVFEGHTHYVMQ  147 (229)
Q Consensus        73 ~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-----~~~~~~~~~~~~~v~~  147 (229)
                      ++.+.+..+-+-|++++- ...|. ....|.++.|+..+++++.|+..|.|...|++..     +.....+  |.+.|++
T Consensus       228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence            344456667777887753 23444 4566889999999999999999999999999754     2233333  6677777


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCCCCCc---eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLGSASP---NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +..-..++..|++.+.+|+|++||++..++   +.+.++|.....-+-+.-.+....++++++|...|||.++.+..+.+
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            765543567788889999999999987776   78888885432222222233445788999999999999999999988


Q ss_pred             eccC
Q psy4653         225 LESG  228 (229)
Q Consensus       225 ~~~~  228 (229)
                      ++..
T Consensus       384 ipf~  387 (425)
T KOG2695|consen  384 IPFP  387 (425)
T ss_pred             cCCC
Confidence            8753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=4e-09  Score=88.49  Aligned_cols=206  Identities=15%  Similarity=0.078  Sum_probs=120.8

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEec-C--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEE-EeCCCe--EEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYN-G--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT-GSDDMQ--VCVF   84 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~d-g--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~d~~--i~iw   84 (229)
                      +..+...+.+..|+|||+.++..+.+ +  .|.+||+.+++.... ...........|+|+|+.|+. .+.++.  |.++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            33445677899999999988887643 3  688899988765332 222334457899999997764 556664  7777


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe-CCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      |+++++. ..+..+........|+|+++.++..+ .++  .|.++|+..+......+.+.  ......|+| ++..++..
T Consensus       292 dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~Sp-DG~~l~~~  367 (448)
T PRK04792        292 DIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITP-DGRSMIMV  367 (448)
T ss_pred             ECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECC-CCCEEEEE
Confidence            8877654 34444555567889999999775443 344  46666765543222222322  233467888 56666554


Q ss_pred             E-CCC--cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE-eeCCCe--EEEEECCCCeEEEeec
Q psy4653         162 S-LDR--TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS-GADDRL--VKIWDYQNKTCVQTLE  226 (229)
Q Consensus       162 ~-~d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~--i~iwd~~~~~~~~~~~  226 (229)
                      + .++  .|.++|+.++... .+.... ......|.  +++..|+. ...++.  +.+++.+ +...+.+.
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~s--pdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~  433 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVA--PNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP  433 (448)
T ss_pred             EecCCceEEEEEECCCCCeE-EccCCC-CCCCceEC--CCCCEEEEEEecCCceEEEEEECC-CCceEECc
Confidence            4 344  4555677665432 232211 11122453  45555444 444443  6667764 44555553

>KOG1334|consensus

Probab=99.27  E-value=1.6e-11  Score=98.73  Aligned_cols=166  Identities=20%  Similarity=0.280  Sum_probs=130.3

Q ss_pred             EEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe-ccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEec
Q psy4653          52 SFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF-EAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNW  128 (229)
Q Consensus        52 ~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~  128 (229)
                      ++..|...|..+.|+..|..|++|+.|..|.+||...+.....+ .+|...|..-.|-|.  ..-+++++.||+|++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            34556778999999999999999999999999999887766554 568877888888874  457899999999999887


Q ss_pred             CCceeee--eeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE--ec-CCC---ceEEEEEEeCCCcC
Q psy4653         129 EKAWACQ--QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL--EG-HEK---GVNCVDYYHGGDKP  200 (229)
Q Consensus       129 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~-h~~---~v~~~~~~~~~~~~  200 (229)
                      .....+.  .....|.++|..++..|.+...|.|++.|+.+.=.|+++..+...+  +. +..   ..+.++..+. +..
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~-nt~  295 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR-NTN  295 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC-Ccc
Confidence            6554443  3345688999999999999999999999999999999887654333  22 333   3556665433 334


Q ss_pred             EEEEeeCCCeEEEEECCC
Q psy4653         201 YLISGADDRLVKIWDYQN  218 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~  218 (229)
                      .+++|+.|.-+++||.+.
T Consensus       296 ~faVgG~dqf~RvYD~R~  313 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRR  313 (559)
T ss_pred             ccccCChhhhhhhhcccc
Confidence            799999999999999874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=1.5e-08  Score=84.40  Aligned_cols=177  Identities=11%  Similarity=0.043  Sum_probs=114.1

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~  113 (229)
                      ..|.++|....+. +.+......+.+..|+|+|+.|+..+.+   ..|.+||+++++... +..+...+.++.|+|+++.
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            3688888865443 4444455568899999999998887654   479999998875432 2334456678999999987


Q ss_pred             EE-EEeCCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-CC--cEEEEeCCCCCceEEEecCCCc
Q psy4653         114 LL-TSSDDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL-DR--TVKVWQLGSASPNFTLEGHEKG  187 (229)
Q Consensus       114 ~~-s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~h~~~  187 (229)
                      |+ +.+.++  .|++||+.... ...+ ..+........|+| ++..|+..+. ++  .|.++|+.+++. ..+..+...
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~-~~~l-~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~  323 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQ-LTRL-TNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY  323 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCC-EEEC-CCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence            65 444444  58888987542 2222 23333344567888 6777665543 33  577778766543 334434444


Q ss_pred             eEEEEEEeCCCcCEEEEeeCCC---eEEEEECCCCeE
Q psy4653         188 VNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTC  221 (229)
Q Consensus       188 v~~~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~  221 (229)
                      .....|+  +++.+|+.++.++   .|.+||+.++..
T Consensus       324 ~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       324 NASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             ccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            5556664  4556777777665   788999887644

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=3.4e-10  Score=86.82  Aligned_cols=210  Identities=19%  Similarity=0.333  Sum_probs=141.2

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-eEE----EEEecC------------cCeEEEEEcCCCC--EEEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVK----SFEVCD------------LPVRAAKFVPRKN--WIVT   74 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-~~~----~~~~~~------------~~v~~~~~~~~~~--~l~s   74 (229)
                      ..+.|.++.|...|.+|++|...|.|.++.-+... +..    .|+.|+            ..|..+.|..+++  .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34688999999999999999999999999876533 211    133332            3477888876543  5666


Q ss_pred             EeCCCeEEEEECCC-------------------cce-----------------------EEEe-ccCCCceeEEEEcCCC
Q psy4653          75 GSDDMQVCVFNYNT-------------------LER-----------------------FHSF-EAHSDYVRCVAVHPTQ  111 (229)
Q Consensus        75 g~~d~~i~iwd~~~-------------------~~~-----------------------~~~~-~~h~~~i~~v~~~~~~  111 (229)
                      .+.|.+|++|.+-.                   +.+                       .+.+ .+|.--|+++.|..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            67999999997521                   100                       1111 3455557899998888


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeee--ecc-----eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC------Cce
Q psy4653         112 PFLLTSSDDMLIKLWNWEKAWACQQVF--EGH-----THYVMQIVINPKDNNTFASASLDRTVKVWQLGSA------SPN  178 (229)
Q Consensus       112 ~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~  178 (229)
                      ..++++ .|-.|.+|+++.......+.  ..|     ...|++..|+|.....|.-.+..|+|++-|+++.      ..+
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            877766 47789999987654433322  122     2346677889987788888889999999999853      122


Q ss_pred             EEE--ec--------CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC-CeEEEeecc
Q psy4653         179 FTL--EG--------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLES  227 (229)
Q Consensus       179 ~~~--~~--------h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~  227 (229)
                      +..  .+        -...+..+.|  +++++++++-+. -+|+|||.+. .++++|+.-
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kF--s~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKF--SDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEE--cCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence            222  11        1234566676  456668887666 5899999986 468888754

>KOG4547|consensus

Probab=99.20  E-value=4e-09  Score=86.79  Aligned_cols=144  Identities=17%  Similarity=0.199  Sum_probs=121.1

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEE
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCV  105 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v  105 (229)
                      ..++-|...|.|.+++...++...++.  .|..+|.++.++.+-.+|.+++.|+++..|+.......+.+++.+..+.++
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            355668889999999999999988876  355689999999888999999999999999999988889999988999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC----CCCEEEE-EECCCcEEEEeCCC
Q psy4653         106 AVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK----DNNTFAS-ASLDRTVKVWQLGS  174 (229)
Q Consensus       106 ~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s-~~~d~~i~~wd~~~  174 (229)
                      +++|++.++++++  ++|++||+++. .....|.||.++|.++.|-..    .+.++++ +..+..|.+|-...
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999999986  59999999876 567779999999999987542    2456554 45777888887654

>KOG0309|consensus

Probab=99.20  E-value=1.2e-10  Score=98.23  Aligned_cols=201  Identities=19%  Similarity=0.322  Sum_probs=143.9

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCC-CCeEEEEEe-cCcCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCc-
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-NQNVKSFEV-CDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNTL-   89 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~-~~~~v~~~~~~~~~--~~l~sg~~d~~i~iwd~~~~-   89 (229)
                      ...+.++..+|.|+.++.++.-|-.. -|+.. ..+.+-+.. ..-.|-.+.|+|..  .+-++.....+-.+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            35788999999999888887666544 45443 333222221 12235667777643  23344445556678987532 


Q ss_pred             -c-eEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          90 -E-RFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        90 -~-~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                       . .-..+-+|...|+.+-|+|+.+ .+++++.|..+-.||++....+...+..-...-.+|.|+..++..+|+ +..+-
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~  181 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGND  181 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCc
Confidence             2 2234568899999999999877 578999999999999988766555554444556789999887777764 66788


Q ss_pred             EEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         167 VKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       167 i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      |++||.+.+ .++..+++|...++.++|... ....+++.+.|++|++||+.+
T Consensus       182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~-~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF-KYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             eEEEeccCCCcceEEecccceeeehHHHhhh-hhhhhcccCCCCceeeecccc
Confidence            999999765 588899999989999998543 233688999999999999964

>KOG0309|consensus

Probab=99.20  E-value=1.2e-10  Score=98.10  Aligned_cols=208  Identities=15%  Similarity=0.248  Sum_probs=139.6

Q ss_pred             cccCCCceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCe-EEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQN-VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      +.||+..|..+-|+|+.+.+++. +.|-.|+.||+++... +..+..-......+.|+-..-.+++.+..+.|++||...
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~  189 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK  189 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence            57999999999999998877665 5799999999998643 444444455688899997655555556777899999875


Q ss_pred             -cceEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE----
Q psy4653          89 -LERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS----  162 (229)
Q Consensus        89 -~~~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----  162 (229)
                       +.++..+++|...|+.++|..-. ..+.+++.|++|+.||-++.............++....+-|....+++.-.    
T Consensus       190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n  269 (1081)
T KOG0309|consen  190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN  269 (1081)
T ss_pred             CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe
Confidence             45788899999999999997643 357789999999999975432211111112233443333333222222111    


Q ss_pred             ------CCCcEEEEeCC-CCCceEEEecCCCceEEEEEEe--------CCCcCEEEEeeCCCeEEEEECCC
Q psy4653         163 ------LDRTVKVWQLG-SASPNFTLEGHEKGVNCVDYYH--------GGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       163 ------~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~--------~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                            .+..-..|+.. ...+++.+.||.+.|...-|..        ....-.|+|=|.|..+|+|.+.+
T Consensus       270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                  12222333332 2467889999988776554422        11123699999999999999864

>KOG1064|consensus

Probab=99.17  E-value=1.9e-10  Score=104.76  Aligned_cols=187  Identities=17%  Similarity=0.178  Sum_probs=136.8

Q ss_pred             EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec-cCCCceeEEEEcCC
Q psy4653          32 ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE-AHSDYVRCVAVHPT  110 (229)
Q Consensus        32 ~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~i~~v~~~~~  110 (229)
                      ....++...-|..+.+.....  ..-..|.++.=+|..-+-++|+.||++++|....++.+..+. +....|+.+.|+.+
T Consensus      2185 ~~n~~~~~~tq~~~~~~~~~k--~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2185 PSNLPWLGSTQTSRGASVMIK--HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ 2262 (2439)
T ss_pred             cccCCccccceecccceeEee--cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc
Confidence            334455555555554333222  223468888888888888999999999999988777655543 22378999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE---CCCcEEEEeCC-CCCceEEEecCCC
Q psy4653         111 QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS---LDRTVKVWQLG-SASPNFTLEGHEK  186 (229)
Q Consensus       111 ~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~-~~~~~~~~~~h~~  186 (229)
                      |..+..+..||.+.+|...  .++.....+|...-....|-   +..+++++   .++.+.+||.. .+.......+|..
T Consensus      2263 Gnk~~i~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred             CCceeeeccCCceeecccC--CcceeccccCCccccceeee---ehhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence            9999999999999999986  23444456676666666653   24666653   67899999963 3333344488999


Q ss_pred             ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       187 ~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++.+++|.  +..++|+||+.+|.|++||++..+.++++++
T Consensus      2338 gaT~l~~~--P~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2338 GATVLAYA--PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred             CceEEEEc--CcceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence            99999995  4667999999999999999999888777653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=9.9e-08  Score=87.47  Aligned_cols=199  Identities=9%  Similarity=0.107  Sum_probs=128.5

Q ss_pred             eEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEec-----------------CcCeEEEEEcC-CCCEEEEEeCC
Q psy4653          18 VKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVC-----------------DLPVRAAKFVP-RKNWIVTGSDD   78 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~sg~~d   78 (229)
                      -..+++.+++..|+.+ .....|+.+|..++.. ..+...                 -..-..+.++| ++++.++.+.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            4678899988766555 4567899999887653 222110                 01125789999 55666777778


Q ss_pred             CeEEEEECCCcceEEEecc---------CC------CceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeee-----
Q psy4653          79 MQVCVFNYNTLERFHSFEA---------HS------DYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQV-----  137 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~---------h~------~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~-----  137 (229)
                      +.|++||..++... .+.+         +.      ..-..|+++|++. ++++-+.++.|++||+..+......     
T Consensus       705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            89999998765432 2111         10      1235699999988 5566677899999998754321100     


Q ss_pred             -------ee---c-----ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-------------cCCCceE
Q psy4653         138 -------FE---G-----HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-------------GHEKGVN  189 (229)
Q Consensus       138 -------~~---~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------~h~~~v~  189 (229)
                             +-   +     .-.....+++++ ++.++++.+.+++|++||..++.......             +.-....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~  862 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA  862 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence                   00   0     001134677776 67889999999999999997664332111             1111345


Q ss_pred             EEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       190 ~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      .+++.  ++++++++-+.++.|++||+++++.
T Consensus       863 GIavd--~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        863 GLALG--ENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEe--CCCCEEEEECCCCEEEEEECCCCcc
Confidence            66764  3556888888999999999998865

>KOG4532|consensus

Probab=99.10  E-value=4.8e-08  Score=73.70  Aligned_cols=193  Identities=13%  Similarity=0.091  Sum_probs=126.7

Q ss_pred             CCCeEEEEEecCeEEEEEcCCCCeEEE-EEecCcCeEEEEEcC---C-CCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q psy4653          26 TEPWMLASLYNGHVHVWNHETNQNVKS-FEVCDLPVRAAKFVP---R-KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD  100 (229)
Q Consensus        26 ~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~~---~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~  100 (229)
                      ...+|++|+..|.+.+|...+.+.... ...+.   ..+....   + .-.+..++.|..+++++++.+..-  +..|..
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn---n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSN---NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQ  157 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccc---cchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeecc
Confidence            345889999999999999998654322 22222   2221111   1 123566678888888877543221  122332


Q ss_pred             --ceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeeeee-cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC-
Q psy4653         101 --YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQQVFE-GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA-  175 (229)
Q Consensus       101 --~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-  175 (229)
                        -+.+++++++++.+++.+....|-.|.+++... ...+.. .....-....|+. ....||.+..||++.+||++.- 
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccc
Confidence              278899999999999999999999999876432 233222 2233345667775 5679999999999999998753 


Q ss_pred             CceE----EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         176 SPNF----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       176 ~~~~----~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      .+..    +.+.|.+.+..+.|...+.-.+|+-.-.=+.+.+-|++++.-.+.
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            2222    234577888888887544334566555667899999998865443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.09  E-value=1.2e-06  Score=71.23  Aligned_cols=204  Identities=14%  Similarity=0.198  Sum_probs=125.7

Q ss_pred             CceEEEEEccCCCeEEEEE-ecCeEEEEEcCC-CCeEEE---EE----------ecCcCeEEEEEcCCCCEEEEEeC-CC
Q psy4653          16 DRVKCCDLHPTEPWMLASL-YNGHVHVWNHET-NQNVKS---FE----------VCDLPVRAAKFVPRKNWIVTGSD-DM   79 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~sg~~-d~   79 (229)
                      ..-..++++|++++|+++. .+|.|.++++.. +.....   +.          +......++.|+|+++++++... ..
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            3456789999999999987 589999999987 433222   11          11235789999999998777644 34


Q ss_pred             eEEEEECCCcc-eE---EEeccC-CCceeEEEEcCCCCEEE-EEeCCCcEEEEecC--Ccee-eeeeee----cc--eee
Q psy4653          80 QVCVFNYNTLE-RF---HSFEAH-SDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWE--KAWA-CQQVFE----GH--THY  144 (229)
Q Consensus        80 ~i~iwd~~~~~-~~---~~~~~h-~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~--~~~~-~~~~~~----~~--~~~  144 (229)
                      .|.+|+++... .+   ..++.. ...=+.+.|+|+++++. +.-.+++|.++++.  .+.. ......    +.  ...
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            79999886544 12   222222 23357899999999775 45567889999987  2211 111111    11  114


Q ss_pred             EEEEEEcCCCCCE-EEEEECCCcEEEEeCCC--CCc--eEEEecCCCceEEEEEEeCCCcCEEEEee-CCCeEEEEEC--
Q psy4653         145 VMQIVINPKDNNT-FASASLDRTVKVWQLGS--ASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDY--  216 (229)
Q Consensus       145 v~~~~~~~~~~~~-l~s~~~d~~i~~wd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~--  216 (229)
                      ...+.++| ++.+ +++.-....|.+|++..  +..  +..+.........+++.  +++++|+.+. .++.|.+|++  
T Consensus       247 ~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s--~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  247 PAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS--PDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE---TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe--CCCCEEEEEecCCCeEEEEEEeC
Confidence            57788998 4555 45555778999999943  222  22223223335677774  4566666655 6789999976  


Q ss_pred             CCCeEE
Q psy4653         217 QNKTCV  222 (229)
Q Consensus       217 ~~~~~~  222 (229)
                      ++|...
T Consensus       324 ~tG~l~  329 (345)
T PF10282_consen  324 DTGKLT  329 (345)
T ss_dssp             TTTEEE
T ss_pred             CCCcEE
Confidence            566543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=4e-08  Score=81.94  Aligned_cols=161  Identities=11%  Similarity=0.031  Sum_probs=97.7

Q ss_pred             CCCceEEEEEccCCCeEEEEEe-----cCeEEEEEcCCC---CeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLY-----NGHVHVWNHETN---QNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVF   84 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~-----dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iw   84 (229)
                      ........+|+|||+.|+..+.     +..+.+|++.++   +................|+|+|+.|+..+ .+|...+|
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            3344556799999988887652     234555777653   33233222222345679999999777655 46655555


Q ss_pred             --ECCC-cceEEEeccCCCceeEEEEcCCCCEEEEEeCC---CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          85 --NYNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD---MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        85 --d~~~-~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d---~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                        ++.. +.....+..+...+....|+|+++.++..+.+   ..|.+||+..+.. ..+..+ ...+....|+| ++..|
T Consensus       309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~-~~~~~~p~wSp-DG~~L  385 (428)
T PRK01029        309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTS-PENKESPSWAI-DSLHL  385 (428)
T ss_pred             EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCC-CCCccceEECC-CCCEE
Confidence              4432 23334444444567789999999988755433   4689999876632 222222 23456678988 56665


Q ss_pred             E-EEEC--CCcEEEEeCCCCCc
Q psy4653         159 A-SASL--DRTVKVWQLGSASP  177 (229)
Q Consensus       159 ~-s~~~--d~~i~~wd~~~~~~  177 (229)
                      + ++..  ...|.++|+..++.
T Consensus       386 ~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        386 VYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEEECCCCCceEEEEECCCCCE
Confidence            5 4332  34678888876654

>KOG2695|consensus

Probab=99.07  E-value=5.5e-10  Score=86.63  Aligned_cols=149  Identities=18%  Similarity=0.219  Sum_probs=113.3

Q ss_pred             EEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-----ceEEEeccCCCceeEE
Q psy4653          31 LASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL-----ERFHSFEAHSDYVRCV  105 (229)
Q Consensus        31 ~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-----~~~~~~~~h~~~i~~v  105 (229)
                      ++.+.+..|-+-|+++|..... . ....|.++.|...++++..|...|.|...|++..     .+.+.+ -|...|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf-~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSF-Q-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccccc-c-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            6677788999999999865433 2 4456888999999999999999999999998653     233333 388899999


Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEecCCcee--eeeeeecceee--EEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEE
Q psy4653         106 AVHP-TQPFLLTSSDDMLIKLWNWEKAWA--CQQVFEGHTHY--VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT  180 (229)
Q Consensus       106 ~~~~-~~~~~~s~~~d~~v~lwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  180 (229)
                      ..-. +++++.+++-+|+|++||++-.+.  -...++||...  -.-+.+++ .+..+++++.|...|+|.++.+..+.+
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeec
Confidence            8876 788899999999999999864422  14557788432  12233455 456888899999999999999888777


Q ss_pred             Eec
Q psy4653         181 LEG  183 (229)
Q Consensus       181 ~~~  183 (229)
                      ++-
T Consensus       384 ipf  386 (425)
T KOG2695|consen  384 IPF  386 (425)
T ss_pred             cCC
Confidence            754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=8.3e-07  Score=71.48  Aligned_cols=199  Identities=10%  Similarity=0.075  Sum_probs=129.6

Q ss_pred             EccCCCeEEEEEe----------cCeEEEEEcCCCCeEEEEEecCc-------CeEEEEEcCCCCEEEEEeC--CCeEEE
Q psy4653          23 LHPTEPWMLASLY----------NGHVHVWNHETNQNVKSFEVCDL-------PVRAAKFVPRKNWIVTGSD--DMQVCV   83 (229)
Q Consensus        23 ~~p~~~~l~~~~~----------dg~v~~wd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~sg~~--d~~i~i   83 (229)
                      ++||++.++++..          ++.|.+||+.+.+.+..+..-..       .-..+.++|+|++|.+...  +..+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998888755          78999999999999888765322       2347889999999988763  578999


Q ss_pred             EECCCcceEEEeccCC------------------C-------------ceeEEE-E-------------cC-CCCEEEEE
Q psy4653          84 FNYNTLERFHSFEAHS------------------D-------------YVRCVA-V-------------HP-TQPFLLTS  117 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~------------------~-------------~i~~v~-~-------------~~-~~~~~~s~  117 (229)
                      .|+++++.+.++.-..                  .             .+.... |             .+ ++..++.+
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            9998876654332100                  0             011111 1             22 56666555


Q ss_pred             eCCCcEEEEecCCcee----eeeeeec-------ceeeEEEEEEcCCCCCEEEEEE---------CCCcEEEEeCCCCCc
Q psy4653         118 SDDMLIKLWNWEKAWA----CQQVFEG-------HTHYVMQIVINPKDNNTFASAS---------LDRTVKVWQLGSASP  177 (229)
Q Consensus       118 ~~d~~v~lwd~~~~~~----~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~  177 (229)
                      .. |+|.+-|+.....    ....+..       ..+..-.+++++..+.+++...         ..++|.++|..+.+.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            55 8888888533211    1111100       1112223788875444444231         125899999999988


Q ss_pred             eEEEecCCCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECCCCeEEEee
Q psy4653         178 NFTLEGHEKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       178 ~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~~  225 (229)
                      +..+.- ...+..+++.+  ++. +|.+.. .++.|.+.|..+++.++++
T Consensus       292 i~~i~v-G~~~~~iavS~--Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       292 LRKIEL-GHEIDSINVSQ--DAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEeC-CCceeeEEECC--CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            887764 23577788854  444 566554 6889999999999999988

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190|consensus

Probab=99.03  E-value=7.3e-10  Score=91.00  Aligned_cols=205  Identities=13%  Similarity=0.197  Sum_probs=135.2

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-------CCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-------NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      ..|.||+..|.+++--.+.+.+++++.|++|++|.++.       ..+..+|+.|+.+|..+.|..+.++++++  ||.|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence            34889999999988666777799999999999999874       23566788899999999999998888865  8999


Q ss_pred             EEEECCCcceEEEec-c-CCCceeEEEEcC--CCCEEEEE-eCCCcEEEEecCCce-eee-eee--ecceeeEEEEEEcC
Q psy4653          82 CVFNYNTLERFHSFE-A-HSDYVRCVAVHP--TQPFLLTS-SDDMLIKLWNWEKAW-ACQ-QVF--EGHTHYVMQIVINP  152 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~-~-h~~~i~~v~~~~--~~~~~~s~-~~d~~v~lwd~~~~~-~~~-~~~--~~~~~~v~~~~~~~  152 (229)
                      .+||.=-+..+..+. . ..+.+.-+..-+  +.++++.+ +...+|+++|-+... .++ ++.  .+...-+.++++.+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            999975554443221 1 112222333323  33444444 778899999976532 222 222  22334467778876


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEE-EECCCC
Q psy4653         153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI-WDYQNK  219 (229)
Q Consensus       153 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~i-wd~~~~  219 (229)
                       .|+.++.|-..|.|.+.|.++++.+...+..+-....++.  ..+ +.|+....|.++.+ |....+
T Consensus       887 -~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa--psd-q~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  887 -KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA--PSD-QALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             -CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC--chh-HHHHhhcccceeEeeehhcCC
Confidence             6889999999999999999998755444332222222332  112 24555556666666 655443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=1.4e-07  Score=72.43  Aligned_cols=188  Identities=14%  Similarity=0.081  Sum_probs=118.9

Q ss_pred             ccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe-ccCC---
Q psy4653          24 HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF-EAHS---   99 (229)
Q Consensus        24 ~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~---   99 (229)
                      .+++..++++..++.+..||..+|+.+..+.... .+.... ...++.++.++.++.+..+|..+++.+... ....   
T Consensus        33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            3466678888899999999999999988877632 222212 224566677778889999999999988773 3221   


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-----------EEEEEEcCCCCCEEEEEECCCcEE
Q psy4653         100 DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-----------VMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus       100 ~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ...........+..++.+..++.|..+|++++...-.. ......           ...+.+.  ++ .+..++.++.+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~  186 (238)
T PF13360_consen  111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVV  186 (238)
T ss_dssp             STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEE
T ss_pred             ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEE
Confidence            11222233333778888888999999999887543222 111100           1223332  34 555556666544


Q ss_pred             EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      ..|+.+++.++...  .......   +...+..|+.++.++.|..||.++++.+
T Consensus       187 ~~d~~tg~~~w~~~--~~~~~~~---~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  187 AVDLATGEKLWSKP--ISGIYSL---PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEETTTTEEEEEEC--SS-ECEC---EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEec--CCCccCC---ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            44999988666443  2223321   1223446777779999999999999875

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=4.2e-07  Score=76.11  Aligned_cols=176  Identities=14%  Similarity=0.048  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEE
Q psy4653          38 HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL  114 (229)
Q Consensus        38 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~  114 (229)
                      .|.++|...+.. ..+..+...+....|+|+|+.|+..+.+   ..|.+||+++++... +....+.+....|+|+++.+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            488888876554 3344455678999999999988776543   368899998776432 22233445678999999977


Q ss_pred             E-EEeCCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE-CCC--cEEEEeCCCCCceEEEecCCCce
Q psy4653         115 L-TSSDDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS-LDR--TVKVWQLGSASPNFTLEGHEKGV  188 (229)
Q Consensus       115 ~-s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~h~~~v  188 (229)
                      + +.+.++  .|.++|+.... ... +..+........|+| ++..++..+ .++  .|.++|+.+++.. .+.......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~-~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~  333 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQ-LSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYN  333 (430)
T ss_pred             EEEEccCCCceEEEEECCCCC-eEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence            6 555555  58888987653 222 233334455677888 566655444 333  5777777665532 222111112


Q ss_pred             EEEEEEeCCCcCEEEEeeC-CC--eEEEEECCCCeE
Q psy4653         189 NCVDYYHGGDKPYLISGAD-DR--LVKIWDYQNKTC  221 (229)
Q Consensus       189 ~~~~~~~~~~~~~l~s~s~-d~--~i~iwd~~~~~~  221 (229)
                      ....|+  +++..|+..+. ++  .|.+||+.+++.
T Consensus       334 ~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        334 ARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             cceEEC--CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            234554  44555555443 33  588899988754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.01  E-value=1.7e-09  Score=58.62  Aligned_cols=39  Identities=28%  Similarity=0.536  Sum_probs=36.5

Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN  127 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd  127 (229)
                      ++++..+++|.+.|++++|+|++.++++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497|consensus

Probab=98.99  E-value=2.2e-07  Score=72.13  Aligned_cols=208  Identities=13%  Similarity=0.222  Sum_probs=124.3

Q ss_pred             cccCCCceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC------------
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD------------   77 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------------   77 (229)
                      +..-.+++.+.+|||+|+.++.. ..+-.|.+|.+.+.+... ++.-+..+..++|+|+|++.+..+.            
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            44446789999999999766655 578899999999865532 2323445788889999988766552            


Q ss_pred             ------------------------CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC----
Q psy4653          78 ------------------------DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE----  129 (229)
Q Consensus        78 ------------------------d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~----  129 (229)
                                              +..+-+||---.-.+..+. ..-.+..+.|+|.+++++.|+.|+.+|+-+--    
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                    1223334321100111111 12357899999999999999999999875510    


Q ss_pred             -----------Cce---------e-------ee----------------ee------------------eecceeeEEEE
Q psy4653         130 -----------KAW---------A-------CQ----------------QV------------------FEGHTHYVMQI  148 (229)
Q Consensus       130 -----------~~~---------~-------~~----------------~~------------------~~~~~~~v~~~  148 (229)
                                 ...         .       +.                ..                  +......+..+
T Consensus       245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l  324 (447)
T KOG4497|consen  245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL  324 (447)
T ss_pred             hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence                       000         0       00                00                  00001223466


Q ss_pred             EEcCCCCCEEEEEEC--CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         149 VINPKDNNTFASASL--DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +|++ |..+++|-.+  -..+-+||++..+. +.+--...+|.+..|.  +..+.|+.+.....+++|......+++.
T Consensus       325 afs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~Wd--P~~prL~vctg~srLY~W~psg~~~V~v  398 (447)
T KOG4497|consen  325 AFSC-DSTYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEWD--PGRPRLVVCTGKSRLYFWAPSGPRVVGV  398 (447)
T ss_pred             eecC-CceEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEeC--CCCceEEEEcCCceEEEEcCCCceEEec
Confidence            7776 5566665432  24688999976543 3332334568777774  3444555555555689998776555543

>KOG4190|consensus

Probab=98.99  E-value=2.4e-09  Score=87.98  Aligned_cols=169  Identities=17%  Similarity=0.196  Sum_probs=118.9

Q ss_pred             EEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcE
Q psy4653          51 KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI  123 (229)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v  123 (229)
                      ..|.+|+..|+.+.-..+.|-+++++.|.++++|.++.       ..+-.+++.|..+|..+.|-.+-++++++  |+-|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence            34556777777777777788999999999999998753       22456788999999999999988877655  8999


Q ss_pred             EEEecCCceeeeeee----ecceeeEEEEEEcCCCCCEEEEE-ECCCcEEEEeCCCCCceEEEe-----cCCCceEEEEE
Q psy4653         124 KLWNWEKAWACQQVF----EGHTHYVMQIVINPKDNNTFASA-SLDRTVKVWQLGSASPNFTLE-----GHEKGVNCVDY  193 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~  193 (229)
                      -+||.-.+....+..    ++..+.|.++- + .+..++..| +...+++++|.+...-+.+++     +....+.+++.
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-N-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecc-c-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999954332222221    12222333332 1 133444444 788999999998876444443     23345778887


Q ss_pred             EeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       194 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      .+  .++.++.|-.+|.|.+-|.++|+.+..+
T Consensus       885 a~--~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  885 AD--KGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             cc--CcchhhHHhcCCcEEEEecCCCceeccC
Confidence            54  4457999999999999999999987754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.99  E-value=9e-10  Score=59.70  Aligned_cols=37  Identities=16%  Similarity=0.449  Sum_probs=34.8

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWN   43 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd   43 (229)
                      ..+.+.+|+.+|.+++|+|+++.+++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1354|consensus

Probab=98.99  E-value=2.8e-08  Score=77.31  Aligned_cols=160  Identities=18%  Similarity=0.319  Sum_probs=112.3

Q ss_pred             CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cc----eEEEeccCC------------CceeEEEEcCCCC--EEEEE
Q psy4653          57 DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LE----RFHSFEAHS------------DYVRCVAVHPTQP--FLLTS  117 (229)
Q Consensus        57 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~----~~~~~~~h~------------~~i~~v~~~~~~~--~~~s~  117 (229)
                      .+.+.++.|...|.+|++|..+|.+.++.-+. .+    ....++.|.            +.|+.+.|.+++.  .++.+
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45689999999999999999999999996432 22    233455664            2478899998765  68889


Q ss_pred             eCCCcEEEEecCCceee----------------------------------eeee-ecceeeEEEEEEcCCCCCEEEEEE
Q psy4653         118 SDDMLIKLWNWEKAWAC----------------------------------QQVF-EGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus       118 ~~d~~v~lwd~~~~~~~----------------------------------~~~~-~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      +.|++|++|-+......                                  .+++ ..|..-|.++.++. |...++| .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-A  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-A  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-c
Confidence            99999999987532110                                  1111 24666788888886 5566665 5


Q ss_pred             CCCcEEEEeCCCCCceEEE---ecCC-----CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         163 LDRTVKVWQLGSASPNFTL---EGHE-----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~---~~h~-----~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .|-+|.+|++.-....+.+   +.+.     .-|++.-|++.. .+.++-.|+-|+|++-|++..
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhh
Confidence            6899999998755444443   3332     235666776543 457788888899999999854

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.94  E-value=7e-07  Score=73.44  Aligned_cols=187  Identities=10%  Similarity=0.079  Sum_probs=117.3

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeE-----EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR-----AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-  100 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-  100 (229)
                      +..++.+..+|.+..||.++|+.+..+........     +...  .+..++.+..++.+..+|.++++.+........ 
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            34567777888999999999888777654322111     1111  134677888899999999998887654321100 


Q ss_pred             ---c------e-eEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653         101 ---Y------V-RCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus       101 ---~------i-~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                         .      + ....+  .+..++.++.++.+..+|.+++...-.. ..  ........   .+..+..++.|+.+..+
T Consensus       223 g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~-~~--~~~~~p~~---~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       223 GRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKR-DA--SSYQGPAV---DDNRLYVTDADGVVVAL  294 (377)
T ss_pred             CCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEee-cc--CCccCceE---eCCEEEEECCCCeEEEE
Confidence               0      0 11112  2456777888999999999776432211 11  11111222   24566677889999999


Q ss_pred             eCCCCCceEEEecCCC-ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         171 QLGSASPNFTLEGHEK-GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       171 d~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      |..+++.++....-.. .......    .+..|+.++.||.|.++|.++++.+.+++.
T Consensus       295 d~~tG~~~W~~~~~~~~~~ssp~i----~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       295 DRRSGSELWKNDELKYRQLTAPAV----VGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             ECCCCcEEEccccccCCccccCEE----ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            9999887766532111 1111122    123688899999999999999999877764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912|consensus

Probab=98.94  E-value=2e-07  Score=79.65  Aligned_cols=213  Identities=13%  Similarity=0.172  Sum_probs=156.7

Q ss_pred             chhhhhcccCCCceEEEEEccCC------------CeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC---C
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTE------------PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR---K   69 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~------------~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---~   69 (229)
                      .|..+.+.-|...|+.+.|.|..            ..++++...|.|.+||...+-.+..+..+.+++..++|-+.   .
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S  124 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS  124 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence            45667788899999999998642            24455567899999999998888888888889999999763   2


Q ss_pred             -CEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCc------eeeeeeeecc
Q psy4653          70 -NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKA------WACQQVFEGH  141 (229)
Q Consensus        70 -~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~------~~~~~~~~~~  141 (229)
                       ..|++-.....+.+|+..+|+.+..+........|+.+.| +.+.+...+..|.+.+.+.-..      .+..++-..|
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~  204 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH  204 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence             4677778888999999999999988776667788899998 4556777777888888875211      1112222222


Q ss_pred             ee-------------------------eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeC
Q psy4653         142 TH-------------------------YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG  196 (229)
Q Consensus       142 ~~-------------------------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  196 (229)
                      ..                         +..+.+|+|.-.+.++ ...-+.+.++|++-..++....-....+.-+++.+.
T Consensus       205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~~~~l~vvpier~~akfv~vlP~  283 (1062)
T KOG1912|consen  205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD  283 (1062)
T ss_pred             cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence            11                         1123445664333443 355778999999887788777766777888888888


Q ss_pred             CCcCEEEEeeCCCeEEEEECCC
Q psy4653         197 GDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       197 ~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ++...|.+.-.||.+.||--+.
T Consensus       284 ~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  284 PRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             CCcceEEEEecCCeEEEEEeec
Confidence            8878899999999999998665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=7.9e-06  Score=63.17  Aligned_cols=198  Identities=11%  Similarity=0.078  Sum_probs=123.1

Q ss_pred             EEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          20 CCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-PRKNWIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        20 ~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      +..|.+ ++.++++-...+.|..|+..+++... +...  ....+.+. +++ .|+.+..++ +.++|+++++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            567888 56666666678999999999875533 2322  26677777 554 444555555 45559888754322221


Q ss_pred             -----CCCceeEEEEcCCCCEEEEEeCC--------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          98 -----HSDYVRCVAVHPTQPFLLTSSDD--------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        98 -----h~~~i~~v~~~~~~~~~~s~~~d--------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                           .....+.+++.|++.+.++....        +.|..++.. . ....... .-.....++|+|....++++-+..
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVAD-GLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEE-EESSEEEEEEETTSSEEEEEETTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEec-CcccccceEECCcchheeeccccc
Confidence                 23467889999999988877654        456667665 2 3333332 234467899998433355677888


Q ss_pred             CcEEEEeCCCCCc-e---EEE-ecCC--CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         165 RTVKVWQLGSASP-N---FTL-EGHE--KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       165 ~~i~~wd~~~~~~-~---~~~-~~h~--~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +.|..+++..... +   ..+ ....  .....+++  ..++++.++....+.|.++|.+ |+.+..++.+
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v--D~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV--DSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE--BTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE--cCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence            9999999864322 1   112 1112  22555666  3456677777788999999998 8887776643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714|consensus

Probab=98.91  E-value=8.7e-09  Score=77.26  Aligned_cols=198  Identities=12%  Similarity=0.116  Sum_probs=119.4

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE------------EEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV------------KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      .|..+.|.-+. .||.+..++.+.......+.+.            +.+..+.++-.+-..+-.++-++++..||.+.++
T Consensus        38 ~~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   38 KLSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            35666676444 5778887877766655444332            2222222222222333346779999999999999


Q ss_pred             ECCCcceE-EEec-cCCCceeEEEEcCCCCEEEEEeC-----CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653          85 NYNTLERF-HSFE-AHSDYVRCVAVHPTQPFLLTSSD-----DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT  157 (229)
Q Consensus        85 d~~~~~~~-~~~~-~h~~~i~~v~~~~~~~~~~s~~~-----d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (229)
                      +.+.--.+ +... .|.+. -+.++...+..+.++..     -+..+.|+++....... .......|..++-+|.+..+
T Consensus       117 s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~-~~~~~~~v~~l~~hp~qq~~  194 (319)
T KOG4714|consen  117 STDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP-SKKALDAVTALCSHPAQQHL  194 (319)
T ss_pred             echHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccc-cccccccchhhhCCcccccE
Confidence            87541111 1111 11111 12233333444433321     12445666543221111 11112337888888988889


Q ss_pred             EEEEECCCcEEEEeCCCCC-ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         158 FASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +++|+.||.+-+||.+... +.-.+..|+..+..+.|.+. +...|++++.||.+--||..+
T Consensus       195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence            9999999999999998764 34456789999999999764 445799999999999999874

>KOG1832|consensus

Probab=98.86  E-value=1e-09  Score=94.48  Aligned_cols=204  Identities=12%  Similarity=0.152  Sum_probs=142.4

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe--EE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ--VC   82 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~--i~   82 (229)
                      +.--+.+..|+..-+|++|+.+.++|+.|+..|.|+++++.+|.....+..|+.+++-+.-+.+|..+++.+.-.+  .-
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            3444568889999999999999999999999999999999999998999999999999998989987766655443  56


Q ss_pred             EEECC-CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc---eeeEEEEEEcCCCCCEE
Q psy4653          83 VFNYN-TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH---THYVMQIVINPKDNNTF  158 (229)
Q Consensus        83 iwd~~-~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l  158 (229)
                      +|+.. ++.+.++|..    -.++.|+.....-+.|+.-..+.+||++....+...+.+-   ...-..+.|+|. ..++
T Consensus      1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~-D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC-DTLI 1245 (1516)
T ss_pred             HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC-cceE
Confidence            89874 4556665543    3588999876655666666688899998875554444321   222356678884 4555


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +   .||  .+||.+..+.++.+..-...+ .-.|+++++.  ++.-     -.|||+++.+.+++++
T Consensus      1246 l---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~e--VIIN-----SEIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNE--VIIN-----SEIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             e---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCce--EEee-----chhhhhHHHHHHhcCc
Confidence            4   455  589998776665554322111 1234444432  3222     2589999887766654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=2.6e-06  Score=71.64  Aligned_cols=176  Identities=12%  Similarity=0.035  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEE
Q psy4653          38 HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DM--QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL  114 (229)
Q Consensus        38 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~--~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~  114 (229)
                      .+.++|...... +.+......+.+..|+|+|+.|+..+. ++  .|.+||+.+++... +...........|+|+++.+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            677778766544 344455667889999999998877654 33  58888988776432 22122334578999999977


Q ss_pred             E-EEeCCCc--EEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE-CCC--cEEEEeCCCCCceEEEecCCCce
Q psy4653         115 L-TSSDDML--IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS-LDR--TVKVWQLGSASPNFTLEGHEKGV  188 (229)
Q Consensus       115 ~-s~~~d~~--v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~h~~~v  188 (229)
                      + +.+.++.  |.++|+..+. ...+ ..+........|+| ++..++..+ .++  .|.++|+.+++.. .+.......
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~-~~~l-t~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~  352 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKA-LTRI-TRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQN  352 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCC-eEEC-ccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCC
Confidence            5 5566665  7777876542 2222 23334456678998 566655444 344  4666677655432 222111122


Q ss_pred             EEEEEEeCCCcCEEEEee-CCCe--EEEEECCCCeE
Q psy4653         189 NCVDYYHGGDKPYLISGA-DDRL--VKIWDYQNKTC  221 (229)
Q Consensus       189 ~~~~~~~~~~~~~l~s~s-~d~~--i~iwd~~~~~~  221 (229)
                      ...+|+  +++.+|+..+ .++.  |.++|+.+++.
T Consensus       353 ~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        353 LGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             cCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            234564  3455554443 3443  55577777754

>KOG0882|consensus

Probab=98.84  E-value=7.9e-08  Score=77.28  Aligned_cols=217  Identities=13%  Similarity=0.148  Sum_probs=148.3

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC---CEEEEEe-CCC
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK---NWIVTGS-DDM   79 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~sg~-~d~   79 (229)
                      +++.+.+..|-..|.+++.+-++-.+.+.+. |..++++|+++-..+.-.+....+=.+-.+..+|   ..|+++. .++
T Consensus        43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg  122 (558)
T KOG0882|consen   43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSG  122 (558)
T ss_pred             eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCC
Confidence            3566778888889999999999988888777 9999999998866554333333222222222233   1344443 467


Q ss_pred             eEEEEECCC-c-ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-ee-------------eeeeccee
Q psy4653          80 QVCVFNYNT-L-ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQ-------------QVFEGHTH  143 (229)
Q Consensus        80 ~i~iwd~~~-~-~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~-------------~~~~~~~~  143 (229)
                      .|.++|-.. . +....-+-|..+|.++.+.+.+..+++....|.|..|..+...+ +.             .-+..-..
T Consensus       123 ~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt  202 (558)
T KOG0882|consen  123 KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT  202 (558)
T ss_pred             CcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccccc
Confidence            899998643 2 33344456899999999999999999999999999999863111 11             11222334


Q ss_pred             eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE--------------------------------ecCCCce-EE
Q psy4653         144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL--------------------------------EGHEKGV-NC  190 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--------------------------------~~h~~~v-~~  190 (229)
                      ...++.++| ++..+.+-+.|..||++++++++..+++                                +.|...+ ..
T Consensus       203 ~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  203 EPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             CccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            567788888 6889998899999999999887543322                                2232222 22


Q ss_pred             EEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       191 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +.|  ...+++|+-|+.=| |++.++.++.+++.+
T Consensus       282 ~~f--des~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  282 AVF--DESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             eEE--cCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            333  33456888888765 999999999988876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=1.1e-05  Score=67.26  Aligned_cols=192  Identities=10%  Similarity=-0.030  Sum_probs=112.1

Q ss_pred             ceEEEEEccCCCe-EEEEEe---cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEE-EeCC--CeEEEEECCCc
Q psy4653          17 RVKCCDLHPTEPW-MLASLY---NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT-GSDD--MQVCVFNYNTL   89 (229)
Q Consensus        17 ~v~~~~~~p~~~~-l~~~~~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~d--~~i~iwd~~~~   89 (229)
                      ....-.|+|+++. ++.++.   ...|.++|+.+++...... .........|+|+|+.|+. .+.+  ..|.++|++++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5678899999985 554443   3579999999887655433 4445667889999986654 3334  46777788776


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEE-EEeCCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC--
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD--  164 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--  164 (229)
                      +. ..+..+........|+|+++.++ ++...+  .|.+.|+..+.....++.+.    ....|+| ++..++..+..  
T Consensus       268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SP-DG~~Ia~~~~~~~  341 (419)
T PRK04043        268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVST-YKNYIVYSSRETN  341 (419)
T ss_pred             cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECC-CCCEEEEEEcCCC
Confidence            53 34433333334568999998665 443444  57777776543322222222    1247898 56766655433  


Q ss_pred             -------CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee-CCC--eEEEEECCCC
Q psy4653         165 -------RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDR--LVKIWDYQNK  219 (229)
Q Consensus       165 -------~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~--~i~iwd~~~~  219 (229)
                             ..|.+.|+.++.. ..+.... ......|+  +++..|+-.+ ..+  .+.+.++...
T Consensus       342 ~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~S--PDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        342 NEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFS--SDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             cccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEEC--CCCCEEEEEEccCCcEEEEEEecCCC
Confidence                   3677778876643 3333221 22235564  4555444333 222  3566666544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.83  E-value=2.7e-05  Score=63.32  Aligned_cols=199  Identities=11%  Similarity=0.129  Sum_probs=123.6

Q ss_pred             CceEEEEEccCCCeEEEEEe----cCeEEEEEcCCC--Ce--EEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q psy4653          16 DRVKCCDLHPTEPWMLASLY----NGHVHVWNHETN--QN--VKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNY   86 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~----dg~v~~wd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~   86 (229)
                      ..-..++++|+++.|.++..    ++.|..|++...  ++  +.........-..+.++|++++|+++. .+|.+.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34567889999999999876    579999988764  33  223332334567799999999998887 4789999998


Q ss_pred             CCc-ceEEE---ec----------cCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecCCcee-ee--eee-ecceeeEEE
Q psy4653          87 NTL-ERFHS---FE----------AHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEKAWA-CQ--QVF-EGHTHYVMQ  147 (229)
Q Consensus        87 ~~~-~~~~~---~~----------~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~-~~--~~~-~~~~~~v~~  147 (229)
                      +.. .....   +.          .-.....++.++|+++++++... ...|.+|+++.... +.  ..+ .........
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            763 22111   11          01234678999999998876633 35899999876531 11  111 122234577


Q ss_pred             EEEcCCCCCE-EEEEECCCcEEEEeCC--CCC--ceEEEec----CC--CceEEEEEEeCCCcCEEEE-eeCCCeEEEEE
Q psy4653         148 IVINPKDNNT-FASASLDRTVKVWQLG--SAS--PNFTLEG----HE--KGVNCVDYYHGGDKPYLIS-GADDRLVKIWD  215 (229)
Q Consensus       148 ~~~~~~~~~~-l~s~~~d~~i~~wd~~--~~~--~~~~~~~----h~--~~v~~~~~~~~~~~~~l~s-~s~d~~i~iwd  215 (229)
                      +.|+| ++.+ ++..-.+++|.++++.  .+.  .+..+..    ..  .....+.+.  +++++|.. ...++.|.+|+
T Consensus       197 ~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is--pdg~~lyvsnr~~~sI~vf~  273 (345)
T PF10282_consen  197 LAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS--PDGRFLYVSNRGSNSISVFD  273 (345)
T ss_dssp             EEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE---TTSSEEEEEECTTTEEEEEE
T ss_pred             EEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe--cCCCEEEEEeccCCEEEEEE
Confidence            88998 4554 4566688899999987  221  1122211    11  135567774  45555554 44678999999


Q ss_pred             CC
Q psy4653         216 YQ  217 (229)
Q Consensus       216 ~~  217 (229)
                      ++
T Consensus       274 ~d  275 (345)
T PF10282_consen  274 LD  275 (345)
T ss_dssp             EC
T ss_pred             Ee
Confidence            94

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.82  E-value=1.2e-06  Score=80.59  Aligned_cols=156  Identities=10%  Similarity=0.044  Sum_probs=105.4

Q ss_pred             EEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEEEEec---------------CcCeEEEEEcCCCCE-EEEEeCCCeE
Q psy4653          19 KCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVC---------------DLPVRAAKFVPRKNW-IVTGSDDMQV   81 (229)
Q Consensus        19 ~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~-l~sg~~d~~i   81 (229)
                      ..++|+|+ +..+++...++.|++||..++... .+...               -..-..+.++|+++. .++-+.++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            46899995 555566677899999999887543 22110               012456899999884 4555667899


Q ss_pred             EEEECCCcceEEEe-------------ccC--------CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee-e
Q psy4653          82 CVFNYNTLERFHSF-------------EAH--------SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF-E  139 (229)
Q Consensus        82 ~iwd~~~~~~~~~~-------------~~h--------~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~-~  139 (229)
                      ++||++++......             ...        -..-..+++++++.++++-+.++.|++||...... .... .
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v-~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV-TTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE-EEEecc
Confidence            99998865432111             000        00124889999999889999999999999875422 2111 1


Q ss_pred             c------------ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc
Q psy4653         140 G------------HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP  177 (229)
Q Consensus       140 ~------------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  177 (229)
                      +            .-.....+++++ ++.++++.+.+++|++||+.+++.
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence            1            112356778887 678999999999999999987643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.82  E-value=3.6e-06  Score=65.88  Aligned_cols=169  Identities=11%  Similarity=0.159  Sum_probs=113.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEe-----cCeEEEEEcC-CCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC--
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLY-----NGHVHVWNHE-TNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD--   77 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----dg~v~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--   77 (229)
                      ...++|.||-      .|||||++|+++-.     .|.|-+||+. +.+.+..|..+...=..+.+.|+++.|+++..  
T Consensus        47 ~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI  120 (305)
T PF07433_consen   47 PPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI  120 (305)
T ss_pred             CCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence            3457788886      89999999999864     3789999999 55666777766555566779999988877752  


Q ss_pred             ----------------CCeEEEEECCCcceEEE--e--ccCCCceeEEEEcCCCCEEEEEeCCCc-------EEEEecCC
Q psy4653          78 ----------------DMQVCVFNYNTLERFHS--F--EAHSDYVRCVAVHPTQPFLLTSSDDML-------IKLWNWEK  130 (229)
Q Consensus        78 ----------------d~~i~iwd~~~~~~~~~--~--~~h~~~i~~v~~~~~~~~~~s~~~d~~-------v~lwd~~~  130 (229)
                                      +-++...|..+++.+.+  +  .-|+.+|+-+++.+++..++..=..+.       |.+++...
T Consensus       121 ~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~  200 (305)
T PF07433_consen  121 ETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG  200 (305)
T ss_pred             ccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC
Confidence                            23455556666666655  4  336778999999999876665533332       33333322


Q ss_pred             ceeeeee----eecceeeEEEEEEcCCCCCEE-EEEECCCcEEEEeCCCCCceEEE
Q psy4653         131 AWACQQV----FEGHTHYVMQIVINPKDNNTF-ASASLDRTVKVWQLGSASPNFTL  181 (229)
Q Consensus       131 ~~~~~~~----~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~  181 (229)
                      .......    ...-.+++-+|++++ ++.++ +|+=..+.+.+||..++..+...
T Consensus       201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  201 ALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             cceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence            1111111    122357889999987 55555 45558889999999988765444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.81  E-value=1.4e-06  Score=71.70  Aligned_cols=188  Identities=12%  Similarity=0.053  Sum_probs=111.1

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEE
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA  106 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~  106 (229)
                      +..+++++.+|.|..+|..+|+.+..+...........  .++..++.++.++.+..+|.++++.+..............
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            56788888999999999999999887665442222221  2467788888999999999999998876553322111112


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE-----EEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE
Q psy4653         107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL  181 (229)
Q Consensus       107 ~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  181 (229)
                      +  .+..++.++.++.+..+|.+++...-. +.......     ......  + ..++.+..++.+..+|..+++.+++.
T Consensus       143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       143 V--ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             E--ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence            2  234667777899999999876643221 11111000     011111  2 36677788899999999888766543


Q ss_pred             ecCC-C---c---eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         182 EGHE-K---G---VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       182 ~~h~-~---~---v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      .... .   .   +..+.-.+.-.+..+..++.+|.+..||.++++.+
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~  264 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL  264 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence            2110 0   0   00000000001124555666777777777766554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2315|consensus

Probab=98.79  E-value=1.6e-07  Score=77.19  Aligned_cols=131  Identities=19%  Similarity=0.292  Sum_probs=96.3

Q ss_pred             CCceEEEEEccCCCeEEEEE--ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCc
Q psy4653          15 SDRVKCCDLHPTEPWMLASL--YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYNTL   89 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~   89 (229)
                      +.+|.++.|+|+++-+++.-  ..-.+-++|++. +++..+  .+.+=.++.|+|.|++|+.++-+   |.+-+||+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            57999999999998776643  567999999985 444443  45677899999999988777654   68999999998


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeeeecceeeEEEEEEcCC
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSD------DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK  153 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~  153 (229)
                      +.+..+++-.  -+-+.|+|+|.+|+|++.      |+.++||+..........|+.   ...++.|-|.
T Consensus       347 K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s---EL~qv~W~P~  411 (566)
T KOG2315|consen  347 KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS---ELLQVEWRPF  411 (566)
T ss_pred             hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH---hHhheeeeec
Confidence            8887776533  457899999999998865      688999997543222222221   3455666553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.78  E-value=4e-06  Score=75.95  Aligned_cols=199  Identities=16%  Similarity=0.216  Sum_probs=132.1

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEE----EcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC--C
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVW----NHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN--T   88 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~w----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~--~   88 (229)
                      .++|.++.|-++...+..+..+|.|.+.    |..+... .....-+..|.+++|+|++..|+..+.++++.+..-.  .
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            4689999999999999999999999999    5555333 3334456789999999999999999999988877421  0


Q ss_pred             -----------c--ceE--------EEecc------------------------CCCceeEEEEcCCCCEEEEEeC---C
Q psy4653          89 -----------L--ERF--------HSFEA------------------------HSDYVRCVAVHPTQPFLLTSSD---D  120 (229)
Q Consensus        89 -----------~--~~~--------~~~~~------------------------h~~~i~~v~~~~~~~~~~s~~~---d  120 (229)
                                 +  +.+        .+|.+                        ..+.-..++|..||.+|++++.   .
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~  233 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET  233 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence                       0  000        01110                        1223457899999999998765   2


Q ss_pred             ---CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC---CCcEEEEeCCCCC-ceEEEe--cCCCceEEE
Q psy4653         121 ---MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL---DRTVKVWQLGSAS-PNFTLE--GHEKGVNCV  191 (229)
Q Consensus       121 ---~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~-~~~~~~--~h~~~v~~~  191 (229)
                         +.+|||+-+.  ....+-+.-.+--..++|.| .|.++|+.-.   ...|.+|.....+ .-+.++  .....+..+
T Consensus       234 ~~~R~iRVy~ReG--~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l  310 (928)
T PF04762_consen  234 GSRRVIRVYSREG--ELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL  310 (928)
T ss_pred             CceeEEEEECCCc--eEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence               5789999652  22333332233345678998 6888887653   3456666543221 123443  334567888


Q ss_pred             EEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         192 DYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       192 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      .|  +.++.+||.--.|. |++|-..+..
T Consensus       311 ~W--n~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  311 AW--NSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             EE--CCCCCEEEEEecCC-ceEEEeeCCE
Confidence            88  55667888877665 9999877653

>KOG2315|consensus

Probab=98.77  E-value=8e-06  Score=67.53  Aligned_cols=194  Identities=16%  Similarity=0.212  Sum_probs=122.7

Q ss_pred             cCCCceEEEEEccC-CCeEEEE------EecCeEEEEEcCCCCe-----EEEEEecCcCeEEEEEcCCCC-EEEEEe--C
Q psy4653          13 ARSDRVKCCDLHPT-EPWMLAS------LYNGHVHVWNHETNQN-----VKSFEVCDLPVRAAKFVPRKN-WIVTGS--D   77 (229)
Q Consensus        13 ~~~~~v~~~~~~p~-~~~l~~~------~~dg~v~~wd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~-~l~sg~--~   77 (229)
                      -|..++..+.++|. .+..++.      +....|+||-..-...     .+.|.  ...-..+.|++.|. +|+..+  -
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEee
Confidence            35678999999998 4444332      3456899998763221     11221  12235578888776 333332  2


Q ss_pred             CC---------eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe--CCCcEEEEecCCceeeeeeeecceeeEE
Q psy4653          78 DM---------QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLWNWEKAWACQQVFEGHTHYVM  146 (229)
Q Consensus        78 d~---------~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~v~  146 (229)
                      |.         .+.+.+++.....-.+ .-.++|.++.|+|+++-|++.-  .=-++.++|++-.    -++.--.++-.
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~df~egpRN  315 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFDFPEGPRN  315 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEeCCCCCcc
Confidence            32         4666666632222222 2468999999999998775442  3468999998643    23333456788


Q ss_pred             EEEEcCCCCCEEEEEEC---CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeC------CCeEEEEECC
Q psy4653         147 QIVINPKDNNTFASASL---DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD------DRLVKIWDYQ  217 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------d~~i~iwd~~  217 (229)
                      ++.|+|. +++++-+|-   -|.|-+||+.+-+.+..+..-.  ..-++|  .+++.+++|+..      |+.++||++.
T Consensus       316 ~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW--~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  316 TAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEW--SPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ceEECCC-CCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEE--cCCCcEEEEEeccccEEecCCeEEEEec
Confidence            8999994 677776664   4799999998866665554422  223466  456677777664      7889999987


Q ss_pred             C
Q psy4653         218 N  218 (229)
Q Consensus       218 ~  218 (229)
                      -
T Consensus       391 G  391 (566)
T KOG2315|consen  391 G  391 (566)
T ss_pred             C
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.76  E-value=5.3e-05  Score=61.19  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=75.0

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCcceEEEeccCCC------
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD----------DMQVCVFNYNTLERFHSFEAHSD------  100 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----------d~~i~iwd~~~~~~~~~~~~h~~------  100 (229)
                      ++|.+.|..+.+.+..+.....+-. + ++|+++.|.++..          +..|.+||.++.+.+..+....+      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999998887665544 4 9999998777765          67899999999999887764322      


Q ss_pred             -ceeEEEEcCCCCEEEEEe-C-CCcEEEEecCCce
Q psy4653         101 -YVRCVAVHPTQPFLLTSS-D-DMLIKLWNWEKAW  132 (229)
Q Consensus       101 -~i~~v~~~~~~~~~~s~~-~-d~~v~lwd~~~~~  132 (229)
                       .-..++++|++++++... . +.+|.+.|+...+
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k  139 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA  139 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence             234789999999887665 3 7899999987653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=6e-06  Score=63.27  Aligned_cols=177  Identities=10%  Similarity=0.076  Sum_probs=112.6

Q ss_pred             cCeEEEEEcCCCCeEEEEEecCcCeEEEE--EcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCE
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCDLPVRAAK--FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~  113 (229)
                      +|.|..||..+|+.+..+.... ......  ..++++.+++++.++.+..||..+++.+..+... +.+...- ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccc
Confidence            6899999999999999886532 121122  3336677888889999999999999988777652 2222111 223445


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeeeecc----e-eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCce
Q psy4653         114 LLTSSDDMLIKLWNWEKAWACQQVFEGH----T-HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV  188 (229)
Q Consensus       114 ~~s~~~d~~v~lwd~~~~~~~~~~~~~~----~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v  188 (229)
                      ++.++.++.++.+|..++...-......    . .......+   .+..++.+..++.+..+|.++++.++.........
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            6666688899999987775543321111    1 11122222   25677888889999999999999988887643221


Q ss_pred             ----------EEEEEEeCCCcCEEEEeeCCCe-EEEEECCCCeEE
Q psy4653         189 ----------NCVDYYHGGDKPYLISGADDRL-VKIWDYQNKTCV  222 (229)
Q Consensus       189 ----------~~~~~~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~  222 (229)
                                ..-... . ++ .+..++.++. +.+ |.++++.+
T Consensus       156 ~~~~~~~~~~~~~~~~-~-~~-~v~~~~~~g~~~~~-d~~tg~~~  196 (238)
T PF13360_consen  156 SSPISSFSDINGSPVI-S-DG-RVYVSSGDGRVVAV-DLATGEKL  196 (238)
T ss_dssp             S--EEEETTEEEEEEC-C-TT-EEEEECCTSSEEEE-ETTTTEEE
T ss_pred             CcceeeecccccceEE-E-CC-EEEEEcCCCeEEEE-ECCCCCEE
Confidence                      111111 2 22 5666666675 566 99999854

...

>KOG2066|consensus

Probab=98.72  E-value=1.2e-06  Score=75.05  Aligned_cols=184  Identities=18%  Similarity=0.236  Sum_probs=125.7

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      .+.++|+++|  +.+++-|+.+|.|++.+....-  +....+...      ..+|.++++++.||++.|..+-+.+...+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3556777776  4568889999999999876532  221122211      66899999999999999998877776665


Q ss_pred             eccCCCceeEEEEcCC-----CCEEEEEeCCCcEEEEecC--CceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          95 FEAHSDYVRCVAVHPT-----QPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~-----~~~~~s~~~d~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      +. -..++.+++++|+     .+.+++|+.-| +.++.-.  .++ ...+.....++|.++.|.   ++++|=++.+| |
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v  181 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-DSVVLSEGEGPIHSIKWR---GNLIAWANDDG-V  181 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-cceeeecCccceEEEEec---CcEEEEecCCC-c
Confidence            54 3467899999998     45789999888 7676521  111 111344457889999995   57888877776 9


Q ss_pred             EEEeCCCCCceEEEecCCCce------EEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         168 KVWQLGSASPNFTLEGHEKGV------NCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~~~v------~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ++||..+...+..++.....+      ..+.|.  ++ ..|+-|-.| +|+|..++.+
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~-~~LVIGW~d-~v~i~~I~~~  235 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DE-DRLVIGWGD-SVKICSIKKR  235 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCcccCCCceEec--CC-CeEEEecCC-eEEEEEEecc
Confidence            999998887776665422222      234553  22 346667766 6888888733

>KOG4532|consensus

Probab=98.72  E-value=4.1e-06  Score=63.51  Aligned_cols=152  Identities=7%  Similarity=-0.041  Sum_probs=104.0

Q ss_pred             EEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-e-EEEe-ccCCCceeEEE
Q psy4653          30 MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-R-FHSF-EAHSDYVRCVA  106 (229)
Q Consensus        30 l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~-~~~~-~~h~~~i~~v~  106 (229)
                      ++.++.|-++++.+++-+-........+....++.++++++++++.+....|..|.+.... . ++.. +.-++.=-+..
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            4555666667766665443322222222347899999999999999999999999886432 2 2322 22334446889


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCceeeee----eeecceeeEEEEEEcCCCC-CEEEEEECCCcEEEEeCCCCCceEEE
Q psy4653         107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQ----VFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQLGSASPNFTL  181 (229)
Q Consensus       107 ~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~  181 (229)
                      |+.....+|++.+||++.|||++....+..    ..+.|.+.+..+.|++... ++|+-.-.-+.+.+.|+++......+
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            999999999999999999999986543322    2345788899999986322 24555556789999999987654433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.71  E-value=6.1e-06  Score=74.81  Aligned_cols=199  Identities=17%  Similarity=0.215  Sum_probs=131.9

Q ss_pred             CCCceEEEEEccCCCeEEEEEe---c---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC---CCeEEEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLY---N---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD---DMQVCVF   84 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~---d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---d~~i~iw   84 (229)
                      +.+.-..++|-.||.++++.+.   .   ..+++|+-+ |.....-+....--.+++|.|+|++||+...   .-.|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            5667788999999999999874   3   478999887 5554443333333567899999999998865   2357777


Q ss_pred             ECCCcceEEEe----ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-eeeeeeeecc-eeeEEEEEEcCCCCCEE
Q psy4653          85 NYNTLERFHSF----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGH-THYVMQIVINPKDNNTF  158 (229)
Q Consensus        85 d~~~~~~~~~~----~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~l  158 (229)
                      .-+. -+-..|    ......|..+.|++++..|+.--.|. |.+|-..+. |...+.+.-. ...+..+.|+|.+...|
T Consensus       287 ErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  287 ERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             ecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence            6443 222222    23456799999999999998877665 999998654 2233333221 22344488999887777


Q ss_pred             EEEECCCcEEEEeCC----CC--C------ce------------------------EEEecCCCceEEEEEEeCCCcCEE
Q psy4653         159 ASASLDRTVKVWQLG----SA--S------PN------------------------FTLEGHEKGVNCVDYYHGGDKPYL  202 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~----~~--~------~~------------------------~~~~~h~~~v~~~~~~~~~~~~~l  202 (229)
                      .....++.+..+++.    .+  .      .+                        +.+. -...|.+++|.+++.  .+
T Consensus       365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~--~~  441 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS--RF  441 (928)
T ss_pred             EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC--eE
Confidence            777776777655432    11  0      01                        1121 134688889865443  48


Q ss_pred             EEeeCCCeEEEEECCC
Q psy4653         203 ISGADDRLVKIWDYQN  218 (229)
Q Consensus       203 ~s~s~d~~i~iwd~~~  218 (229)
                      ++-..||.|.+|....
T Consensus       442 avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  442 AVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EEEECCCCEEEEEecC
Confidence            8889999999998543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.71  E-value=5.8e-05  Score=58.34  Aligned_cols=171  Identities=13%  Similarity=0.077  Sum_probs=109.6

Q ss_pred             eEEEEEc-cCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-----cCcCeEEEEEcCCCCEEEEEeCC--------CeEEE
Q psy4653          18 VKCCDLH-PTEPWMLASLYNGHVHVWNHETNQNVKSFEV-----CDLPVRAAKFVPRKNWIVTGSDD--------MQVCV   83 (229)
Q Consensus        18 v~~~~~~-p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~sg~~d--------~~i~i   83 (229)
                      ...+.+. +++ .++++...+. .++|..+++.......     .....+.+.+.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCC-EEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5666777 564 4555554444 4559999876555544     12347889999999977776544        44666


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCcee---eeeee---ecceeeEEEEEEcCCCCC
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWA---CQQVF---EGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~---~~~~~---~~~~~~v~~~~~~~~~~~  156 (229)
                      ++.+ ++ +..+...-..-+.++|+|+++.|+ +-+..+.|..+++.....   ..+.+   ....+..-.+++.. ++.
T Consensus       120 ~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~  196 (246)
T PF08450_consen  120 IDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGN  196 (246)
T ss_dssp             EETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-
T ss_pred             ECCC-Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCC
Confidence            6665 33 333333345668999999998664 667788999999853221   12222   11122356778876 678


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEE
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  194 (229)
                      +.++....+.|.++|.. ++.+..+......+.+++|-
T Consensus       197 l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            88887889999999987 77777776554567888883

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275|consensus

Probab=98.69  E-value=1.5e-06  Score=75.63  Aligned_cols=183  Identities=14%  Similarity=0.185  Sum_probs=128.7

Q ss_pred             CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEE
Q psy4653          26 TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCV  105 (229)
Q Consensus        26 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v  105 (229)
                      ....++.|+.-..+...|+++.+..+........+.-++.+  ++++.+|...|+|.+-|.++.+.++++.+|++.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            44568888888888889999988877766555456665554  6899999999999999999999999999999988766


Q ss_pred             EEcCCCCEEEEEeCC---------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC---
Q psy4653         106 AVHPTQPFLLTSSDD---------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG---  173 (229)
Q Consensus       106 ~~~~~~~~~~s~~~d---------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~---  173 (229)
                      +.  +|+.|+++|..         .-|+|||++....+. -..-+.++ .-+.++|.-...++.++.-|...+-|..   
T Consensus       224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             ec--cCCeEEEeecccccccccccchhhhhhhhhhhccC-CcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence            55  55788887654         457899986542211 01111111 2244667666778888889999998832   


Q ss_pred             CC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         174 SA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       174 ~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      .. ...+.+..-...+.+++++  .++..++-|..+|.|.+|--
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiS--sn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDIS--SNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCccceeEEccCCCcceeEEec--CCCceEEEecccCcEeeecC
Confidence            22 1223333333447777774  45567999999999999983

>KOG2114|consensus

Probab=98.65  E-value=7.4e-06  Score=70.98  Aligned_cols=200  Identities=13%  Similarity=0.243  Sum_probs=130.1

Q ss_pred             EEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC-eEEEEEcCCCCEEEEEeCCCe-----EEEEECCCc------
Q psy4653          22 DLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDMQ-----VCVFNYNTL------   89 (229)
Q Consensus        22 ~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~~-----i~iwd~~~~------   89 (229)
                      +|++.+..++.|+.+|.|.+.|-.- +.+..|+.++.. +..+....+.++|++-+.|+.     +++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4778888899999999998876543 444667777666 444444444468888777654     889998532      


Q ss_pred             ceE---EEe--ccC--CCceeEEEEcCCCCEEEEEeCCCcEEEEec---CCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          90 ERF---HSF--EAH--SDYVRCVAVHPTQPFLLTSSDDMLIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        90 ~~~---~~~--~~h--~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      .++   +.+  +..  ..++.++++|.+-+.++.|=.+|.|.++.=   ++.............+|+.+.+.. ++...+
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeE
Confidence            122   111  122  456889999999899999999999998852   122111222223457899999875 455523


Q ss_pred             EEECCCcEEEEeCCCCCceEE-EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         160 SASLDRTVKVWQLGSASPNFT-LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      -...-..|.+|.+....|... +..|..+++|..++.. ..+ ++.|+. .-+.+|+......-.+++
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~-t~q-fIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG-TYQ-FICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCC-Ccc-EEEecC-ceEEEEcCCCcceeeeec
Confidence            334455799999875444444 6777778899888543 222 444444 358999987666556655

>KOG1912|consensus

Probab=98.65  E-value=2.2e-06  Score=73.51  Aligned_cols=153  Identities=15%  Similarity=0.188  Sum_probs=117.5

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC------------CEEEEEeCCCeEEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK------------NWIVTGSDDMQVCVF   84 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~sg~~d~~i~iw   84 (229)
                      .-.+++|+|.|  |++-+....|.+-|..+-+.++.++.|+..|+.+.|.|..            -.||++...|.|.+|
T Consensus        17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            36788999999  6665557889999999999999999999999999998742            247777888999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCC---C-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPT---Q-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~---~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      |...+..+..++.|.+++..++|-+.   . ..++.-....++.+|+...+.+.-+. .....+..+..+.|.+...+.-
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-DYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-ccCCcceeeeeeCCCCcceEEE
Confidence            99888777778888889988888653   3 35666666789999998887554332 2223445667788888777766


Q ss_pred             EECCCcEEEEeC
Q psy4653         161 ASLDRTVKVWQL  172 (229)
Q Consensus       161 ~~~d~~i~~wd~  172 (229)
                      -+..|.+.+.+.
T Consensus       174 l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  174 LGSKGFVLSCKD  185 (1062)
T ss_pred             EccCceEEEEec
Confidence            677788887775

>KOG1008|consensus

Probab=98.64  E-value=7.2e-09  Score=86.45  Aligned_cols=199  Identities=16%  Similarity=0.242  Sum_probs=132.3

Q ss_pred             CCceEEEEEcc--CCCeEEEEEecCeEEEEEcCCCCeE--EEEEecCcCeEEEEEcC-CCCEEEEEe----CCCeEEEEE
Q psy4653          15 SDRVKCCDLHP--TEPWMLASLYNGHVHVWNHETNQNV--KSFEVCDLPVRAAKFVP-RKNWIVTGS----DDMQVCVFN   85 (229)
Q Consensus        15 ~~~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~sg~----~d~~i~iwd   85 (229)
                      +.-+.|++++.  +..++++|..+|.|.+-..+.....  .....+..+.++++|++ +.+.||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34567777544  4468888999999999888764332  22334556799999998 456787774    356799999


Q ss_pred             CCCc--ceE--EEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          86 YNTL--ERF--HSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        86 ~~~~--~~~--~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      +++.  .+.  ..+.+ -.....+++|-.+.+.+++|...+.+.++|++..  +.....-.+..+..+.+.|..++++++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs--~~~~~svnTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS--LDSVSSVNTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh--hhhhhhhhhhhcccceecCCCCCceec
Confidence            9865  221  12222 2345668899988889999999999999998743  111111123345556677877888876


Q ss_pred             EECCCcEEEEe-CCC-CCceEEEecC----CCceEEEEEEeCCCcCEEEEeeC-CCeEEEEECC
Q psy4653         161 ASLDRTVKVWQ-LGS-ASPNFTLEGH----EKGVNCVDYYHGGDKPYLISGAD-DRLVKIWDYQ  217 (229)
Q Consensus       161 ~~~d~~i~~wd-~~~-~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s~-d~~i~iwd~~  217 (229)
                      -. |+.|-+|| .+. ..++..+...    ...+..++|++..++ .+++.+. .++|+++|+.
T Consensus       214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence            55 99999999 333 3333333222    234888999876544 5666664 5789999985

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=9.8e-05  Score=56.62  Aligned_cols=203  Identities=13%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEEEecCc---CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSFEVCDL---PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~---~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ++.+++|+. +|...|..|.|=..++.  ..+.+....++   .-+-++|+|++.+||.+...|+|+++|+... .+..+
T Consensus         3 ~~~~~~Gk~-lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKL-LAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI   80 (282)
T ss_pred             eeecCCCcE-EEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence            456778874 45556888887766653  22334333332   4788999999999999999999999998753 33333


Q ss_pred             ccC-------CCceeEEEEcCCC------CEEEEEeCCCcEEEEecC----Cceeeeeeeec---ceeeEEEEEEcCCCC
Q psy4653          96 EAH-------SDYVRCVAVHPTQ------PFLLTSSDDMLIKLWNWE----KAWACQQVFEG---HTHYVMQIVINPKDN  155 (229)
Q Consensus        96 ~~h-------~~~i~~v~~~~~~------~~~~s~~~d~~v~lwd~~----~~~~~~~~~~~---~~~~v~~~~~~~~~~  155 (229)
                      ..-       ...|..+.|-+..      ..|+.-..+|.++=|-+.    +.......|.-   +...|.++.++|...
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            221       2346666665432      146667777777755542    12222333322   355789999998655


Q ss_pred             CEEEEEECCCc----------EEEEeCCCCCceE----------------------------EEec-CCCceEEEEEEeC
Q psy4653         156 NTFASASLDRT----------VKVWQLGSASPNF----------------------------TLEG-HEKGVNCVDYYHG  196 (229)
Q Consensus       156 ~~l~s~~~d~~----------i~~wd~~~~~~~~----------------------------~~~~-h~~~v~~~~~~~~  196 (229)
                      .+++.|+....          +..|-+-.+.|-.                            ..++ ....|..+..  +
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl--S  238 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL--S  238 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE--C
Confidence            45555544332          4556443322111                            0011 1334666666  4


Q ss_pred             CCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         197 GDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       197 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +++.+|++...+|.|.+|++-+-.+++.+..
T Consensus       239 Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  239 PDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            5778999999999999999988777777654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=2.5e-05  Score=59.77  Aligned_cols=164  Identities=13%  Similarity=0.200  Sum_probs=108.1

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-------ecCcCeEEEEEcCCC------CEEEEEeCCCeEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-------VCDLPVRAAKFVPRK------NWIVTGSDDMQVCV   83 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-------~~~~~v~~~~~~~~~------~~l~sg~~d~~i~i   83 (229)
                      +=.-++||||+..||.+...|+|+++|+..... ..+.       ....+|..+.|.+..      ..|++-.-+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            446789999999999999999999999986432 2221       112467777776532      24666678888776


Q ss_pred             EEC--CCcc---eEEEe--ccC-CCceeEEEEcCCCCEEEEEeCC-C----------cEEEEecCCceeee---------
Q psy4653          84 FNY--NTLE---RFHSF--EAH-SDYVRCVAVHPTQPFLLTSSDD-M----------LIKLWNWEKAWACQ---------  135 (229)
Q Consensus        84 wd~--~~~~---~~~~~--~~h-~~~i~~v~~~~~~~~~~s~~~d-~----------~v~lwd~~~~~~~~---------  135 (229)
                      +-+  .+.+   .-+.+  ..| ...|+++.|+|..++|+.||.. .          -+.-|.+-+..+..         
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            654  2222   33333  233 5689999999999887766542 2          25567653221100         


Q ss_pred             -----------e-----eee---cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe
Q psy4653         136 -----------Q-----VFE---GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE  182 (229)
Q Consensus       136 -----------~-----~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  182 (229)
                                 +     .+.   .-...|..+.++| ++..||+...+|+|.+|++.+-.......
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence                       0     011   1135688999999 78999999999999999997765544443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.61  E-value=3.4e-07  Score=76.08  Aligned_cols=74  Identities=15%  Similarity=0.337  Sum_probs=63.1

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      ....+|.|++++|+...|+.|+.||+|.+||...+...  +....-....++|+|+|..+++|+..|.+.+||..-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            35678999999999999999999999999999876433  223344578899999999999999999999999864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.61  E-value=2.6e-05  Score=63.67  Aligned_cols=150  Identities=11%  Similarity=0.130  Sum_probs=109.8

Q ss_pred             EccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCcceEEEeccCCCc
Q psy4653          23 LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM-QVCVFNYNTLERFHSFEAHSDY  101 (229)
Q Consensus        23 ~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-~i~iwd~~~~~~~~~~~~h~~~  101 (229)
                      |++-...+++--.-|...+.+...+-.++.  .+...|.-..+..+++-++.|..|| .+-|+|.++++. +.+...-+.
T Consensus       327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~  403 (668)
T COG4946         327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGN  403 (668)
T ss_pred             hccCCCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccc
Confidence            555433344444457777777666544443  3455688888888888999999999 899999988764 445556678


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC----CCcEEEEeCCCCCc
Q psy4653         102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL----DRTVKVWQLGSASP  177 (229)
Q Consensus       102 i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~  177 (229)
                      |.+++.+++|++++.+.....+.+.|++++. ...+-...-+-|+...|+| +...+|-+--    ...|+++|+..++.
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence            9999999999999999988999999998763 2333233345689999998 5677776544    45799999987653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.57  E-value=1.5e-06  Score=67.15  Aligned_cols=160  Identities=19%  Similarity=0.309  Sum_probs=108.3

Q ss_pred             CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-----eEEEeccCCC------------ceeEEEEcCCCC--EEEEE
Q psy4653          57 DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-----RFHSFEAHSD------------YVRCVAVHPTQP--FLLTS  117 (229)
Q Consensus        57 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-----~~~~~~~h~~------------~i~~v~~~~~~~--~~~s~  117 (229)
                      .+.++++.|...|.+|++|...|.+.+|.-+...     -...+++|..            .|..+.|..++.  .++.+
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3468999999999999999999999999765432     2234666643            377888875543  68888


Q ss_pred             eCCCcEEEEecCCc------------------e-e----------------------eeeee-ecceeeEEEEEEcCCCC
Q psy4653         118 SDDMLIKLWNWEKA------------------W-A----------------------CQQVF-EGHTHYVMQIVINPKDN  155 (229)
Q Consensus       118 ~~d~~v~lwd~~~~------------------~-~----------------------~~~~~-~~~~~~v~~~~~~~~~~  155 (229)
                      +.|++|++|-+.+.                  . +                      +.++. ..|..-+.++.++. +.
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~  184 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK  184 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence            89999999987542                  0 0                      00111 23555677888876 44


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceEEE---ecCC-----CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         156 NTFASASLDRTVKVWQLGSASPNFTL---EGHE-----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~-----~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ..++| +.|-+|.+|++......+.+   +.|.     .-+.+..|++.. .+.++-.+..|.|++-|++..
T Consensus       185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~-cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM-CNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-cceEEEecCCCcEEehhhhhh
Confidence            45554 56889999998654433333   4442     235666776544 346777888899999999854

>KOG1920|consensus

Probab=98.57  E-value=2e-05  Score=70.74  Aligned_cols=198  Identities=14%  Similarity=0.187  Sum_probs=128.9

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CC--cce
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY--NT--LER   91 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~--~~--~~~   91 (229)
                      +.|.++.|..+...++.+..+|.|.+-|.++..... ....+..|.+++|+|++..++-.+.++++.+..-  +.  -+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            689999999999999999999999999988865422 2334568999999999999998888887766532  10  000


Q ss_pred             E-------------------EEeccCC---------------------CceeEEEEcCCCCEEEEE----eCC-CcEEEE
Q psy4653          92 F-------------------HSFEAHS---------------------DYVRCVAVHPTQPFLLTS----SDD-MLIKLW  126 (229)
Q Consensus        92 ~-------------------~~~~~h~---------------------~~i~~v~~~~~~~~~~s~----~~d-~~v~lw  126 (229)
                      +                   ..|.+..                     +.-+.|.|..+|.+++++    ..+ ++|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0                   1121110                     112369999999999874    223 799999


Q ss_pred             ecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE---ECCCcEEEEeCCCCCc-eEEE--ecCCCceEEEEEEeCCCcC
Q psy4653         127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA---SLDRTVKVWQLGSASP-NFTL--EGHEKGVNCVDYYHGGDKP  200 (229)
Q Consensus       127 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~d~~i~~wd~~~~~~-~~~~--~~h~~~v~~~~~~~~~~~~  200 (229)
                      |-+.  ....+-+...+.-.+++|-| .|..+++-   ..|+.|.++....... -+.+  +.....+..++|.  .++.
T Consensus       228 drEg--~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn--s~sd  302 (1265)
T KOG1920|consen  228 DREG--ALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN--SNSD  302 (1265)
T ss_pred             cccc--hhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec--CCCC
Confidence            9762  22222222233345788988 67788764   3566788887643211 1222  2223347888884  4555


Q ss_pred             EEEE---eeCCCeEEEEECCCC
Q psy4653         201 YLIS---GADDRLVKIWDYQNK  219 (229)
Q Consensus       201 ~l~s---~s~d~~i~iwd~~~~  219 (229)
                      +|+.   ......|++|-+.+.
T Consensus       303 iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ceeeeecccccceEEEEEecCe
Confidence            7776   445555999998765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.56  E-value=1e-05  Score=65.91  Aligned_cols=119  Identities=12%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecC-eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNG-HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      +|..+|.=..+.-++.-++.|..|| .+-++|..+++..+. ...-..|.++..+++|+.++++.....|.+.|++++..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            4677788888888888899999998 999999999876444 33345799999999999999999999999999999876


Q ss_pred             EEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCce
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAW  132 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~  132 (229)
                      ...=+.-.+.|+.++|||+++.++=+=-+    ..|+++|+...+
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            54444556789999999999998865444    478999997653

>KOG1645|consensus

Probab=98.54  E-value=8.5e-06  Score=64.99  Aligned_cols=84  Identities=12%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             chhhhhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVC   82 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~   82 (229)
                      |+...-+.+|..-|..++|+|... .+..++-++.|+|.|+++...+..|..+ ..+.+++|..+. ++|.+|..+|.|.
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            344445778889999999999887 6777889999999999999888888877 578889998764 6899999999999


Q ss_pred             EEECCCc
Q psy4653          83 VFNYNTL   89 (229)
Q Consensus        83 iwd~~~~   89 (229)
                      ++|.+..
T Consensus       262 vyD~R~~  268 (463)
T KOG1645|consen  262 VYDMRQP  268 (463)
T ss_pred             EEEccCC
Confidence            9998653

>KOG3621|consensus

Probab=98.53  E-value=3e-06  Score=71.81  Aligned_cols=207  Identities=15%  Similarity=0.132  Sum_probs=129.7

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE-EEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS-FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      -|+.+|.-.++...+.+++.|+.-|.|.+++-.+++.... .......+.....++...++|.|+..|.|.++-++...+
T Consensus        31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             cCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence            3566788888888999999999999999999988765332 222344566677788888999999999999997654321


Q ss_pred             -----EEE-eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          92 -----FHS-FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        92 -----~~~-~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                           +.. -+.|...|+|++|++++..+.+|...|+|.+-.+.....   ..+.+..-.+.|.++...  +..+|++..
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl  188 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL  188 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence                 111 134778999999999999999999999998887765211   011111224556666654  344444433


Q ss_pred             CCCcEEEEeCCCCCceEEEe--cCCCce-EEEEEEeCC---CcCEEEEeeCCCeEEEEECC-CCeEEEeec
Q psy4653         163 LDRTVKVWQLGSASPNFTLE--GHEKGV-NCVDYYHGG---DKPYLISGADDRLVKIWDYQ-NKTCVQTLE  226 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~--~h~~~v-~~~~~~~~~---~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~  226 (229)
                       - +..+++...+. ++.+.  .....+ ...+|.++.   ....|. ++.-| .|+|..+ -|+.++|.+
T Consensus       189 -~-r~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iy-caRPG-~RlWead~~G~V~~Thq  254 (726)
T KOG3621|consen  189 -T-RCILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIY-CARPG-LRLWEADFAGEVIKTHQ  254 (726)
T ss_pred             -h-hhheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEE-EecCC-CceEEeecceeEEEeee
Confidence             2 34455554332 11121  111212 223455442   223344 44433 6889886 366776654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.51  E-value=0.00018  Score=55.40  Aligned_cols=202  Identities=8%  Similarity=0.099  Sum_probs=115.9

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+.+.+-.+.++.+.|+|+...|++.. ..+.|...+. +|+.++.+.... .-.-.+.+..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            456778888899999999987777765 6778887886 478888876543 3477788887787777766788999888


Q ss_pred             CCCcc------eEEEe-----ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC---ceeee-eeee------cceee
Q psy4653          86 YNTLE------RFHSF-----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---AWACQ-QVFE------GHTHY  144 (229)
Q Consensus        86 ~~~~~------~~~~~-----~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~---~~~~~-~~~~------~~~~~  144 (229)
                      +....      ....+     ..+...+..++|.|....|+.+....-.+++.+..   ..... ....      .....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            73211      11212     13456789999999988888787776667776643   11111 0000      11233


Q ss_pred             EEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC---------CceEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653         145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE---------KGVNCVDYYHGGDKPYLISGADDRLVKIW  214 (229)
Q Consensus       145 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~s~d~~i~iw  214 (229)
                      +..+.++|.++.+++-....+.+...|. .++++..+.-..         .....+++.+  +++ |...|+-+..+.|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~--~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP--DGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-T--T---EEEEETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECC--CCC-EEEEcCCceEEEe
Confidence            5778899988888888888999999994 455444332111         2355677743  443 3444555544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=0.00029  Score=55.67  Aligned_cols=196  Identities=12%  Similarity=0.218  Sum_probs=121.1

Q ss_pred             EEEEEccCCCeEEEEEe-cCeEEEEEcCC-CCeEEE--EEecCc----------CeEEEEEcCCCCEEEEEeCCC-eEEE
Q psy4653          19 KCCDLHPTEPWMLASLY-NGHVHVWNHET-NQNVKS--FEVCDL----------PVRAAKFVPRKNWIVTGSDDM-QVCV   83 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~-dg~v~~wd~~~-~~~~~~--~~~~~~----------~v~~~~~~~~~~~l~sg~~d~-~i~i   83 (229)
                      .-+++++++++++++.. .|.|.++-++. |.+...  ...|..          .+.+..+.|++++|++..-.- +|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            77899999999999874 68999999976 432211  112222          288999999999988875433 6899


Q ss_pred             EECCCcceEE----EeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeec---------ceeeEEEEE
Q psy4653          84 FNYNTLERFH----SFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEG---------HTHYVMQIV  149 (229)
Q Consensus        84 wd~~~~~~~~----~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~---------~~~~v~~~~  149 (229)
                      |+++.++...    .++ ....=+-|.|||++++.. ..--+++|-+|...........++.         .......+.
T Consensus       172 y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         172 YDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            9998654321    112 122347899999999865 5556899999998663111111111         122345677


Q ss_pred             EcCCCCCEEEEEE-CCCcEEEEeCCCCCceEEEec----CCCceEEEEEEeCCCcCEEEEeeC-CCeEEEEECCC
Q psy4653         150 INPKDNNTFASAS-LDRTVKVWQLGSASPNFTLEG----HEKGVNCVDYYHGGDKPYLISGAD-DRLVKIWDYQN  218 (229)
Q Consensus       150 ~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~-d~~i~iwd~~~  218 (229)
                      +++ ++..|..+. ....|-++.+........+..    +........+  ++.+.+|+++.. +..|.+|-.+.
T Consensus       251 is~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i--~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         251 ISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI--NPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             ECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee--CCCCCEEEEEccCCCcEEEEEEcC
Confidence            887 566665443 334777777654432222222    1122344455  445667777665 45688888754

>KOG2041|consensus

Probab=98.47  E-value=5.4e-06  Score=70.70  Aligned_cols=200  Identities=9%  Similarity=0.124  Sum_probs=136.2

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe---------------EEEEEecCcCeEEEEEcCCCCEEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN---------------VKSFEVCDLPVRAAKFVPRKNWIVTG   75 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~sg   75 (229)
                      +..| -+..|++|+....+++.|+.||.+++-.+.+...               -+++.+|+..|.-+.|+...+.|-+.
T Consensus        11 iPnn-vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   11 IPNN-VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CCCC-ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            4443 4789999999999999999999999988765321               12346788889999999988899999


Q ss_pred             eCCCeEEEEECCCcceEEEe--ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC
Q psy4653          76 SDDMQVCVFNYNTLERFHSF--EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK  153 (229)
Q Consensus        76 ~~d~~i~iwd~~~~~~~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~  153 (229)
                      ..+|-|.+|-+=.+..+..+  .....-|.+++|..+|..+...-.||.|.+=.++.+.--.+.+++.  ....+.|++ 
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~-  166 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSE-  166 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecc-
Confidence            99999999977555433322  2234568899999999999999999998877765542222222221  133577887 


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCC-------ceEEEec----CCCceEEEEEEeC------CCcCEEEEeeCCCeEEEE
Q psy4653         154 DNNTFASASLDRTVKVWQLGSAS-------PNFTLEG----HEKGVNCVDYYHG------GDKPYLISGADDRLVKIW  214 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~----h~~~v~~~~~~~~------~~~~~l~s~s~d~~i~iw  214 (229)
                      |...++.+-..|.+.++|.+..-       +.-...+    ....+..+.|+++      ++.+.|+.+-.+|.+.|-
T Consensus       167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence            55666677788999999976431       1111111    1112445555432      345677888888877764

>KOG1008|consensus

Probab=98.47  E-value=4.8e-08  Score=81.66  Aligned_cols=160  Identities=14%  Similarity=0.266  Sum_probs=109.8

Q ss_pred             ccCCCceEEEEEcc-CCCeEEEEE----ecCeEEEEEcCCC----CeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeE
Q psy4653          12 TARSDRVKCCDLHP-TEPWMLASL----YNGHVHVWNHETN----QNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus        12 ~~~~~~v~~~~~~p-~~~~l~~~~----~dg~v~~wd~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      .+|-...++++|++ |..+||+|-    .|..+.|||+.++    +....|.. ......+++|..+.+++++|...+.+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~  178 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV  178 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence            45677889999998 456777773    4678999999886    22223332 23346689999889999999999999


Q ss_pred             EEEECCCc-ceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEec-CCceeeeeeeec----ceeeEEEEEEcCCC
Q psy4653          82 CVFNYNTL-ERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNW-EKAWACQQVFEG----HTHYVMQIVINPKD  154 (229)
Q Consensus        82 ~iwd~~~~-~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~-~~~~~~~~~~~~----~~~~v~~~~~~~~~  154 (229)
                      .++|++.. .....  -.++.+..+.+.| ...++++.. |+.|.+||. .+-+.+......    ....+.+++|.|..
T Consensus       179 ~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  179 HIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             hhhhhhhhhhhhhh--hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            99998732 22222  2345677888888 666666555 999999993 332222222211    12247899999987


Q ss_pred             CCEEEEEECC-CcEEEEeCCC
Q psy4653         155 NNTFASASLD-RTVKVWQLGS  174 (229)
Q Consensus       155 ~~~l~s~~~d-~~i~~wd~~~  174 (229)
                      ..++++...| ++|+++|+..
T Consensus       256 tglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  256 TGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cchhhhhccCcceEEEecccc
Confidence            7788887755 6899999753

>KOG2114|consensus

Probab=98.44  E-value=1.5e-05  Score=69.08  Aligned_cols=187  Identities=13%  Similarity=0.162  Sum_probs=122.3

Q ss_pred             cchhhhhcccCCCc-eEEEEEccCCCeEEEEEecC-----eEEEEEcCCC------CeE---EEEE----ecCcCeEEEE
Q psy4653           4 RLDIKRKLTARSDR-VKCCDLHPTEPWMLASLYNG-----HVHVWNHETN------QNV---KSFE----VCDLPVRAAK   64 (229)
Q Consensus         4 ~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~~dg-----~v~~wd~~~~------~~~---~~~~----~~~~~v~~~~   64 (229)
                      .+++-+-+..+... |.-+..-.+..+|++.+.|+     .+++||++.-      +++   +.++    ....++.++.
T Consensus        53 s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~  132 (933)
T KOG2114|consen   53 SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLA  132 (933)
T ss_pred             cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEE
Confidence            34444455666655 55555555557888877654     4899998643      233   2222    1245789999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEE--CCC--cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec
Q psy4653          65 FVPRKNWIVTGSDDMQVCVFN--YNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG  140 (229)
Q Consensus        65 ~~~~~~~l~sg~~d~~i~iwd--~~~--~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~  140 (229)
                      .+.+-+.+|+|-.+|.|..+.  +-.  +.+..-.....++|+.+++..+++.++-...-..|.+|.+....+...+...
T Consensus       133 Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~  212 (933)
T KOG2114|consen  133 VSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN  212 (933)
T ss_pred             EEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc
Confidence            999999999999999988874  321  2222222233578999999988876222223458999999865434555777


Q ss_pred             ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cCCCceEEEE
Q psy4653         141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVD  192 (229)
Q Consensus       141 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~  192 (229)
                      |.....+..+++.++ .|+.++ +.-+.+||.....+-+.+. +|...+....
T Consensus       213 ~G~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~  263 (933)
T KOG2114|consen  213 NGISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVFS  263 (933)
T ss_pred             CCccceeeecCCCCc-cEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEEe
Confidence            777888999887544 355444 4469999988777777777 7765544433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=7e-06  Score=68.51  Aligned_cols=111  Identities=10%  Similarity=0.104  Sum_probs=75.7

Q ss_pred             EEEEEccC-CCeEEEEE----ecCeE----EEEEcCCCCeEEE--EE-ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          19 KCCDLHPT-EPWMLASL----YNGHV----HVWNHETNQNVKS--FE-VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        19 ~~~~~~p~-~~~l~~~~----~dg~v----~~wd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      .++.|+-. ...+.+..    .+|.+    .+|+...++..+.  .. .....+.+.+++|+...|+.|..||+|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            45566653 33444432    24433    3356554443222  11 12457999999999999999999999999998


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA  131 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~  131 (229)
                      ..+....  ....=..+.++|||+|.++++|+..|.+.+||+.-.
T Consensus       289 ~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  289 TRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            7653322  122234578999999999999999999999997544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.42  E-value=0.00011  Score=60.91  Aligned_cols=188  Identities=10%  Similarity=0.068  Sum_probs=109.6

Q ss_pred             eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEE-EEEcC--CCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-----
Q psy4653          29 WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA-AKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-----  100 (229)
Q Consensus        29 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-----  100 (229)
                      .++.+..+|.+.-+|.++|+.+..+......... ..-+|  .+..++.++.++.+..+|.++++.+........     
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~  241 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE  241 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence            4556667788888888888877766532110000 00011  134566778889999899988877655431110     


Q ss_pred             --ceeEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653         101 --YVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS  176 (229)
Q Consensus       101 --~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  176 (229)
                        ....+.-+|  .+..++.++.++.+...|..++...-+...+   ....+..   .+..+..++.++.+...|..+++
T Consensus       242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAV---DGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEE---ECCEEEEEcCCCeEEEEECCCCc
Confidence              011111122  2345666778899999998776432221111   1111222   24566667889999999999888


Q ss_pred             ceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         177 PNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       177 ~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .++....-. .........    +.+|..++.||.+...|.++|+.+-..+
T Consensus       316 ~~W~~~~~~~~~~~sp~v~----~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        316 ELWSQSDLLHRLLTAPVLY----NGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             EEEcccccCCCcccCCEEE----CCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            766543211 111111221    2367889999999999999998876654

>KOG0882|consensus

Probab=98.42  E-value=2.2e-06  Score=69.17  Aligned_cols=208  Identities=14%  Similarity=0.182  Sum_probs=136.7

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCC--C-CeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCc
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET--N-QNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQVCVFNYNTL   89 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~   89 (229)
                      |-+-|+-+ +-...+++.+++.||+++.|--.-  + +-+..+..|-..+.+++.+-++-++.|++. |..++++|++..
T Consensus         8 hrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            55555543 334677899999999999996543  2 223444556667888888888988999777 999999998765


Q ss_pred             ceEEEecc--CCCceeEEEEcCCCC--EE-EEEeCCCcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          90 ERFHSFEA--HSDYVRCVAVHPTQP--FL-LTSSDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        90 ~~~~~~~~--h~~~i~~v~~~~~~~--~~-~s~~~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      .....++.  -.+.+. ...++...  .+ ++.-.++.+-++|-.... +....-.-|..+|.++.+++ .++.++|...
T Consensus        87 DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~  164 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDI  164 (558)
T ss_pred             chhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccc
Confidence            54322211  112222 22233322  23 344557899999954332 22233345889999999997 5788988888


Q ss_pred             CCcEEEEeCCC------CCceEEE---------ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         164 DRTVKVWQLGS------ASPNFTL---------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       164 d~~i~~wd~~~------~~~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .|.|-.|....      ....+.+         ........++.|++  ++..+.+-+.|.+|+++++++|+.++.++
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp--~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP--DGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc--ccCcccccCcccEEEEEEeccchhhhhhh
Confidence            89999998763      1111222         12223355677755  44468888899999999999999888765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.38  E-value=5.2e-05  Score=62.85  Aligned_cols=150  Identities=11%  Similarity=-0.030  Sum_probs=91.0

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCc-CeEE------EEEcC--CCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDL-PVRA------AKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~------~~~~~--~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      +..+++++.+|.|.-+|..+|+.+..+..... ....      +.-.|  .+..+..++.++.+..+|.++++.+...+.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            55778888899999999999999887654321 0000      00011  355677888899999999999998877654


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeeccee----eEEEEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH----YVMQIVINPKDNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  173 (229)
                      ......+..+.  +..++.++.++.+..+|.+++...-..-.....    ........  + ..++.++.++.+...|..
T Consensus       149 ~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        149 AGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             CCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCCCEEEEEEcc
Confidence            33221112222  345666777889999998776443222111000    00011111  2 345556778888888888


Q ss_pred             CCCceEEE
Q psy4653         174 SASPNFTL  181 (229)
Q Consensus       174 ~~~~~~~~  181 (229)
                      +++.+++.
T Consensus       224 ~G~~~W~~  231 (394)
T PRK11138        224 QGQLIWQQ  231 (394)
T ss_pred             CChhhhee
Confidence            87766654

>KOG2041|consensus

Probab=98.33  E-value=5.1e-06  Score=70.86  Aligned_cols=154  Identities=19%  Similarity=0.241  Sum_probs=107.1

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce---------------EEEeccCCCceeEEEEcCCCCEEEEEeCCCc
Q psy4653          58 LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER---------------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDML  122 (229)
Q Consensus        58 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---------------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~  122 (229)
                      ....|+.|+.+..++++|+.||.+++..+.+...               -+.+.+|.+.|.-+.|..+.+.+-++..+|-
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            3578999999999999999999999987754211               1346799999999999999999999999999


Q ss_pred             EEEEecCCceeeeeee-ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceE--EEecCCCceEEEEEEeCCCc
Q psy4653         123 IKLWNWEKAWACQQVF-EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDK  199 (229)
Q Consensus       123 v~lwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~  199 (229)
                      |.+|-+-++.=+.... ....+.|.++.|+. +|..+.....||.|.+=.+.... ++  .+++.  ....+.|  +++.
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~--~l~hv~w--s~D~  168 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQ--LLAHVLW--SEDL  168 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-ecchhcchh--eccceee--cccH
Confidence            9999986553232222 22345678888986 68888888888888776554321 21  12221  1223344  3344


Q ss_pred             CEEEEeeCCCeEEEEECC
Q psy4653         200 PYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       200 ~~l~s~s~d~~i~iwd~~  217 (229)
                      ..++-+-.+|.+.++|.+
T Consensus       169 ~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             HHHHhhhcCCcEEEeccc
Confidence            445556667788888754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.33  E-value=0.00073  Score=53.47  Aligned_cols=156  Identities=13%  Similarity=0.248  Sum_probs=105.4

Q ss_pred             eEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEec---CcCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCc-ce
Q psy4653          18 VKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVC---DLPVRAAKFVPRKNWIVTGS-DDMQVCVFNYNTL-ER   91 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~-~~   91 (229)
                      +-+..|.|++++|++.. .-..|.+|++..|++.......   ...-+.+.|+|++++..+.. -+++|.+|.++.. ..
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence            88899999999999975 5678999999988764433221   23478999999999876555 4788999988763 33


Q ss_pred             EEEeccC---------CCceeEEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeeeee---cceeeEEEEEEcCCCCCEE
Q psy4653          92 FHSFEAH---------SDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEKAWACQQVFE---GHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        92 ~~~~~~h---------~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l  158 (229)
                      +..++.+         .....++.++++|++|.++.. ..+|.+|.+......+....   .+........+++ ++.+|
T Consensus       227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~L  305 (346)
T COG2706         227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFL  305 (346)
T ss_pred             EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEE
Confidence            3433322         234668999999999988754 24788888865533222221   1222234566777 56677


Q ss_pred             EEEE-CCCcEEEEeCCC
Q psy4653         159 ASAS-LDRTVKVWQLGS  174 (229)
Q Consensus       159 ~s~~-~d~~i~~wd~~~  174 (229)
                      +.+. .+..|.+|....
T Consensus       306 iaa~q~sd~i~vf~~d~  322 (346)
T COG2706         306 IAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEccCCCcEEEEEEcC
Confidence            6666 445788887654

>KOG1832|consensus

Probab=98.32  E-value=4.4e-07  Score=78.76  Aligned_cols=164  Identities=16%  Similarity=0.183  Sum_probs=114.1

Q ss_pred             EEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC--cEEEEe
Q psy4653          50 VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM--LIKLWN  127 (229)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~--~v~lwd  127 (229)
                      .+.|..++...+|+.|+...+.|+.|+-.|.|+++++.+|.....+.+|+..|+-+.=+.+|..+++++...  -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            345556677899999999999999999999999999999999899999999999999999999877665543  467999


Q ss_pred             cCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cC---CCceEEEEEEeCCCcCEEE
Q psy4653         128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GH---EKGVNCVDYYHGGDKPYLI  203 (229)
Q Consensus       128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h---~~~v~~~~~~~~~~~~~l~  203 (229)
                      +.........|.+    -..+.|+......+ -|.......+||..+..++.++- +.   ...-++..|++.  -.++ 
T Consensus      1174 ~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~--D~LI- 1245 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC--DTLI- 1245 (1516)
T ss_pred             cccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC--cceE-
Confidence            8765455555543    23455553222222 24444579999999988776632 21   112355566443  2333 


Q ss_pred             EeeCCCeEEEEECCCCeEEEee
Q psy4653         204 SGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       204 s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                        -.||  -+||.+..+.|+.+
T Consensus      1246 --lndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1246 --LNDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             --eeCc--eeeeeccHHHHhhh
Confidence              3455  57999877665544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=0.0002  Score=59.82  Aligned_cols=144  Identities=10%  Similarity=0.063  Sum_probs=85.3

Q ss_pred             cccCCCceEEEEEccCCCeEEEEE-e--cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CC--eEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASL-Y--NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DM--QVCVF   84 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~-~--dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~--~i~iw   84 (229)
                      +......+.+..|+|||+.++... .  +..|.++|+.+++... +...........|+|+|+.|+-.+. .+  .|.+.
T Consensus       228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~  306 (419)
T PRK04043        228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK  306 (419)
T ss_pred             EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence            333444566788999998776653 2  3578888988876533 3333323445679999987655553 33  57777


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC---------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD---------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d---------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      |+++++..+.... ...  ...|+|+++.++-.+..         ..|.+.|++.+.. ..+..+  .......|+| ++
T Consensus       307 dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~--~~~~~p~~SP-DG  379 (419)
T PRK04043        307 KLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN--GVNQFPRFSS-DG  379 (419)
T ss_pred             ECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC--CCcCCeEECC-CC
Confidence            8877665333221 111  24899999987655433         3677778765532 222222  1222467888 56


Q ss_pred             CEEEEEE
Q psy4653         156 NTFASAS  162 (229)
Q Consensus       156 ~~l~s~~  162 (229)
                      ..++-..
T Consensus       380 ~~I~f~~  386 (419)
T PRK04043        380 GSIMFIK  386 (419)
T ss_pred             CEEEEEE
Confidence            6555443

>KOG1275|consensus

Probab=98.29  E-value=2e-05  Score=68.96  Aligned_cols=142  Identities=12%  Similarity=0.197  Sum_probs=108.0

Q ss_pred             CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCcceEEEec
Q psy4653          26 TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---------MQVCVFNYNTLERFHSFE   96 (229)
Q Consensus        26 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---------~~i~iwd~~~~~~~~~~~   96 (229)
                      .++.+++|...|+|.+-|.++.+.+..+..|...+.  +|.-.||.|++++-.         .=|++||++..+.+..++
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence            467899999999999999999999999999987665  466679999988754         347899998877666555


Q ss_pred             cCCCceeEEEEcCCCC-EEEEEeCCCcEEEEe---cCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          97 AHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWN---WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        97 ~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      -+-+. .-+.|+|.-. .+++.+..|+..+.|   +.+...-...+..-...+....+++ +++.++-|..+|.|.+|-
T Consensus       264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeec
Confidence            55443 4567888644 688888999999999   5443221222222344588889987 688999999999999996

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.28  E-value=0.001  Score=52.33  Aligned_cols=206  Identities=15%  Similarity=0.157  Sum_probs=118.7

Q ss_pred             CceEEEEEccCCCeEEE-EEecC-eEEEEEcCCCCeEEEEEecCcC--eEEEEEcCCCCEEEEEeC-----CCeEEEEEC
Q psy4653          16 DRVKCCDLHPTEPWMLA-SLYNG-HVHVWNHETNQNVKSFEVCDLP--VRAAKFVPRKNWIVTGSD-----DMQVCVFNY   86 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~-~~~dg-~v~~wd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~sg~~-----d~~i~iwd~   86 (229)
                      .+.-.++.+|..+..++ +-..| ...+||..+++....+...+..  .-...|+++|++|.+.-.     .|.|-|||.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            34557889996554444 56676 5677999999988776543322  345679999999988754     468999999


Q ss_pred             C-CcceEEEeccCCCceeEEEEcCCCCEEEEEeC-------CCcEEE-----------EecCCceeeee-ee--ecceee
Q psy4653          87 N-TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-------DMLIKL-----------WNWEKAWACQQ-VF--EGHTHY  144 (229)
Q Consensus        87 ~-~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-------d~~v~l-----------wd~~~~~~~~~-~~--~~~~~~  144 (229)
                      . +.+.+.++..|-=.=-.+.+.|+++.|+.+-.       .|..++           -|..++....+ .+  .-|...
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            8 66777777665322235678899976665511       122222           22222222211 11  123344


Q ss_pred             EEEEEEcCCCCCEEEEEECCC-------cEEEEeCCCCCceEEEe-------cCCCceEEEEEEeCCCcCEE-EEeeCCC
Q psy4653         145 VMQIVINPKDNNTFASASLDR-------TVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYL-ISGADDR  209 (229)
Q Consensus       145 v~~~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l-~s~s~d~  209 (229)
                      +..+++.+ ++..++..=+.+       -+-+++.  +..+..+.       .-...+-+|++..  ++..+ +|+=.-+
T Consensus       165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~--~g~~ia~tsPrGg  239 (305)
T PF07433_consen  165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR--DGRLIAVTSPRGG  239 (305)
T ss_pred             eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC--CCCEEEEECCCCC
Confidence            56666654 333332221222       1222222  22111111       1124577888853  44445 4444688


Q ss_pred             eEEEEECCCCeEEEeec
Q psy4653         210 LVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       210 ~i~iwd~~~~~~~~~~~  226 (229)
                      .+.+||..+++.+....
T Consensus       240 ~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  240 RVAVWDAATGRLLGSVP  256 (305)
T ss_pred             EEEEEECCCCCEeeccc
Confidence            99999999999877654

>KOG2066|consensus

Probab=98.28  E-value=5.6e-05  Score=65.29  Aligned_cols=150  Identities=13%  Similarity=0.177  Sum_probs=105.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee-ee
Q psy4653          59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ-QV  137 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~-~~  137 (229)
                      .+.|+.++  ++.|+-|+-+|.+.+.+.+..-  .....|..+      ..+|.++++++.||+|.|-.+.+..... ..
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            45555554  5789999999999999876432  333345443      6678999999999999998886553322 22


Q ss_pred             eecceeeEEEEEEcCC----CCCEEEEEECCCcEEEEeCCC--CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeE
Q psy4653         138 FEGHTHYVMQIVINPK----DNNTFASASLDRTVKVWQLGS--ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLV  211 (229)
Q Consensus       138 ~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i  211 (229)
                      |   ..++..++++|.    ....+++|+.-| +.++..+-  .+..-.+....++|.++.|    .++++|=++++| |
T Consensus       111 f---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W----~g~lIAWand~G-v  181 (846)
T KOG2066|consen  111 F---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW----RGNLIAWANDDG-V  181 (846)
T ss_pred             c---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe----cCcEEEEecCCC-c
Confidence            2   346788888884    356899999888 77775431  1111134455678999998    345777777777 9


Q ss_pred             EEEECCCCeEEEeecc
Q psy4653         212 KIWDYQNKTCVQTLES  227 (229)
Q Consensus       212 ~iwd~~~~~~~~~~~~  227 (229)
                      ++||..+++.+..++.
T Consensus       182 ~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPP  197 (846)
T ss_pred             EEEeccccceeeccCC
Confidence            9999999988776654

>KOG1645|consensus

Probab=98.25  E-value=5.9e-05  Score=60.33  Aligned_cols=122  Identities=7%  Similarity=0.010  Sum_probs=86.9

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCe----------------EEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEe
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGH----------------VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGS   76 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~----------------v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~   76 (229)
                      |...=.++.+++....+..+.....                |++.+..+-+.+..+..+...|..+.|+|..+ +|..++
T Consensus       134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~as  213 (463)
T KOG1645|consen  134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLAS  213 (463)
T ss_pred             hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhhcccccchhhhhhccCccccceeeeec
Confidence            5555566777766554433221111                34444444444444445556799999999877 788999


Q ss_pred             CCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeee
Q psy4653          77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQ  136 (229)
Q Consensus        77 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~  136 (229)
                      .+.+|+|.|+++...+..+..+ ..+.+++|..+.. ++..|-..|.|.+||++.......
T Consensus       214 l~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~  273 (463)
T KOG1645|consen  214 LGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLM  273 (463)
T ss_pred             cCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHh
Confidence            9999999999998888888877 7789999987655 677888999999999987654433

>KOG4640|consensus

Probab=98.23  E-value=9.9e-06  Score=68.05  Aligned_cols=94  Identities=12%  Similarity=0.098  Sum_probs=78.9

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR-AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      .-.+.-+.|+|.-+.+|.+..+|.|.+..++ -+.+..+..++.+++ +++|.|+|++||.|-.||+|++.|++.+..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3468889999999999999999999999998 566778876777777 99999999999999999999999999988876


Q ss_pred             Eec-cCCCceeEEEEcC
Q psy4653          94 SFE-AHSDYVRCVAVHP  109 (229)
Q Consensus        94 ~~~-~h~~~i~~v~~~~  109 (229)
                      .+. .-...|.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            632 2345677888864

>KOG3617|consensus

Probab=98.21  E-value=3.6e-06  Score=73.01  Aligned_cols=112  Identities=19%  Similarity=0.291  Sum_probs=89.9

Q ss_pred             CceEEE-EEccCCCeEEEEE----ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          16 DRVKCC-DLHPTEPWMLASL----YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        16 ~~v~~~-~~~p~~~~l~~~~----~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      +.|..+ +|||..|++++++    ..|+|-|+ +.+|++.+... ..-.+.+++|+|..-.|+.|..-|.+.+|..++.+
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            455444 5999999998886    35889988 56666544321 12346789999999899999999999999988766


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE  129 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~  129 (229)
                      .-.....|...|..+.||++|..+.++..-|.|.+|..+
T Consensus        93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            544556799999999999999999999999999999875

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.20  E-value=0.0022  Score=52.97  Aligned_cols=209  Identities=13%  Similarity=0.167  Sum_probs=117.1

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE-------------------------------------------EEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV-------------------------------------------KSF   53 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~-------------------------------------------~~~   53 (229)
                      .|..+.|.++..-|++|...|.|.+|.+...+.-                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5899999999999999999999999876432110                                           001


Q ss_pred             EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE--ecc------CCCceeEEEEcC-----CC---CEEEEE
Q psy4653          54 EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS--FEA------HSDYVRCVAVHP-----TQ---PFLLTS  117 (229)
Q Consensus        54 ~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~------h~~~i~~v~~~~-----~~---~~~~s~  117 (229)
                      .....+|+++..+ +=-++|.|..+|.+.|.|++....+..  +..      ....++++.|.-     |+   ..+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            1234678888887 445999999999999999976655443  222      234577777762     22   368899


Q ss_pred             eCCCcEEEEecC--Cceeeeeee----ecceeeEEEEE-EcCCCC-------------------CEEEEEECCCcEEEEe
Q psy4653         118 SDDMLIKLWNWE--KAWACQQVF----EGHTHYVMQIV-INPKDN-------------------NTFASASLDRTVKVWQ  171 (229)
Q Consensus       118 ~~d~~v~lwd~~--~~~~~~~~~----~~~~~~v~~~~-~~~~~~-------------------~~l~s~~~d~~i~~wd  171 (229)
                      .+.|.+.+|.+.  .+......+    ..+.+++..+. ++..++                   .-++....+..+|++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999874  111111111    12344554444 322111                   1233345577899999


Q ss_pred             CCCCCceEEEecCCCceEEEEEEe---CCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         172 LGSASPNFTLEGHEKGVNCVDYYH---GGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       172 ~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ..+.+..+...........+.+.+   ...+..|++-..+|.|+++.+-.-+.+..+.
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            887776554442211222333321   1134468888899999999997776666554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.20  E-value=0.00019  Score=59.12  Aligned_cols=159  Identities=14%  Similarity=0.220  Sum_probs=106.8

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---------------
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---------------   78 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---------------   78 (229)
                      -.-+|..+++||.|.+|++.. -..|.+|+......+..+.  ...|.-+.|+|.+++|.+=+..               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhh-ccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            345788999999999888765 3568889988876444443  2358999999999999886543               


Q ss_pred             CeEEEEECCCcceEEEeccCCCc--ee-EEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCC-
Q psy4653          79 MQVCVFNYNTLERFHSFEAHSDY--VR-CVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPK-  153 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~h~~~--i~-~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~-  153 (229)
                      .++.+||+.++..+..+......  .. -+.|+-++.+++-- ...++.++++..+ ....-+.. ....+....|+|. 
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n-~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDN-IEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCc-cccCchhhccccceeeEEecCCC
Confidence            35899999999888887765444  33 68899988887644 2347888986222 11111111 1234666777775 


Q ss_pred             CCCEEEE-----EECCCcEEEEeCCCCCc
Q psy4653         154 DNNTFAS-----ASLDRTVKVWQLGSASP  177 (229)
Q Consensus       154 ~~~~l~s-----~~~d~~i~~wd~~~~~~  177 (229)
                      ++..|+.     .+.+..+++|.+...+.
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~  214 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSV  214 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCe
Confidence            3333332     46778899998875543

>KOG2444|consensus

Probab=98.15  E-value=3.4e-06  Score=62.52  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC-CceE
Q psy4653         111 QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE-KGVN  189 (229)
Q Consensus       111 ~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-~~v~  189 (229)
                      ...++.|+.+|.|.+|.+.........+..-...+-.......++.+..+++.|+.||.|+..-.+.+.....|. .+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            457889999999999998643333333322233343333333344578889999999999998777666666666 4444


Q ss_pred             EEEEEeCCCcCEEEEe--eCCCeEEEEECCC
Q psy4653         190 CVDYYHGGDKPYLISG--ADDRLVKIWDYQN  218 (229)
Q Consensus       190 ~~~~~~~~~~~~l~s~--s~d~~i~iwd~~~  218 (229)
                      ......  ....|..+  |.|..++.|++..
T Consensus       150 ~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVG--SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEec--CCceEEeeccccchhhhhcchhh
Confidence            433332  23356666  8888899998764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.10  E-value=0.00013  Score=60.06  Aligned_cols=180  Identities=16%  Similarity=0.248  Sum_probs=114.0

Q ss_pred             CeEEE-EEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEE
Q psy4653          37 GHVHV-WNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL  115 (229)
Q Consensus        37 g~v~~-wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~  115 (229)
                      ..|.+ |+..+...-..+...+-++..++|+|.|.+|++....+ |.+|+......+..+. | ..|.-+.|+|.+.+|.
T Consensus        11 ~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~   87 (561)
T COG5354          11 AVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLV   87 (561)
T ss_pred             ceEEEeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceee
Confidence            34444 66666555555555667899999999999999876665 8999887766666554 3 4588999999999998


Q ss_pred             EEeCCC---------------cEEEEecCCceeeeeeeecceee--EE-EEEEcCCCCCEEEEEECCCcEEEEeCCCC--
Q psy4653         116 TSSDDM---------------LIKLWNWEKAWACQQVFEGHTHY--VM-QIVINPKDNNTFASASLDRTVKVWQLGSA--  175 (229)
Q Consensus       116 s~~~d~---------------~v~lwd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--  175 (229)
                      +=+...               .+.+||+..+ .+...+.+...+  .. -+.|+- ++.+.|=- -...+.++++...  
T Consensus        88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~t~n~~  164 (561)
T COG5354          88 TWSREPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEITDNIE  164 (561)
T ss_pred             eeccCCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEecCCccc
Confidence            866544               3889998776 333334333222  11 344543 34454432 3446888886221  


Q ss_pred             -CceEEEecCCCceEEEEEEeCCCcCEEEE-----eeCCCeEEEEECCCCeEEEe
Q psy4653         176 -SPNFTLEGHEKGVNCVDYYHGGDKPYLIS-----GADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       176 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-----~s~d~~i~iwd~~~~~~~~~  224 (229)
                       .+...++  ..++....+++.+++.-|+.     ...++.++||.+-.+..+.+
T Consensus       165 ~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t  217 (561)
T COG5354         165 EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT  217 (561)
T ss_pred             cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee
Confidence             1222222  24566667766555544443     66788999999876655543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.10  E-value=0.0017  Score=50.45  Aligned_cols=165  Identities=10%  Similarity=0.114  Sum_probs=117.3

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      +.|-+..|.++.|+|+.+.|++......-.+|=...|+.++..+... ..--.+.|...+++.++--.++.+.++-++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            56667779999999999999999988888888888899998876432 22455778877888888778888888866543


Q ss_pred             ceEEE----------eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee--eecc-------eeeEEEEEE
Q psy4653          90 ERFHS----------FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV--FEGH-------THYVMQIVI  150 (229)
Q Consensus        90 ~~~~~----------~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~--~~~~-------~~~v~~~~~  150 (229)
                      ..+..          ....+.....++|.|.+..|+.+-+-.=+.|+.+.........  ...+       -..+..+.+
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            22111          1111556889999999999999988888888876543211111  0111       123566778


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                      ++.++.+++-+..++.+.-.|....
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCCC
Confidence            8878888888888888888887543

>KOG4640|consensus

Probab=98.08  E-value=2.7e-05  Score=65.51  Aligned_cols=93  Identities=14%  Similarity=0.221  Sum_probs=74.6

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCcee-EEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy4653          58 LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVR-CVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ  136 (229)
Q Consensus        58 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~-~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~  136 (229)
                      ..+.-+.|+|.-.++|.+..+|.+.+..++ .+++..+.-|...++ +++|.|||+.++.|=.||+|++.|.+.+.....
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            457889999999999999999999999998 778888887777777 999999999999999999999999987654433


Q ss_pred             eeecceeeEEEEEEc
Q psy4653         137 VFEGHTHYVMQIVIN  151 (229)
Q Consensus       137 ~~~~~~~~v~~~~~~  151 (229)
                      ..-.-...|.++.|.
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence            211123345555554

>smart00320 WD40 WD40 repeats

Probab=98.05  E-value=2e-05  Score=41.01  Aligned_cols=38  Identities=37%  Similarity=0.646  Sum_probs=33.6

Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN  127 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd  127 (229)
                      +.+..+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617|consensus

Probab=98.04  E-value=8.5e-05  Score=64.84  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=62.5

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      +.+++|||..-.|+.|-.-|-+.+|...+.+.-.....|..++..+.|+|+|+.|+++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5679999999889999999999999999877766666678899999999999999999999999999765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.99  E-value=0.00093  Score=57.02  Aligned_cols=195  Identities=8%  Similarity=0.100  Sum_probs=113.1

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC------eE--EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP------VR--AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH   98 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~------v~--~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h   98 (229)
                      +..++.++.++.|.-.|..+|+.+..+......      +.  .+... ++..++.++.++.+..+|.++++.+..++..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            345677778899999999999998877543320      00  01111 2267888889999999999999998776543


Q ss_pred             CCc-----e-eEEEEcCCCCEEEEEe---------CCCcEEEEecCCceeeeeeeecce-------------------ee
Q psy4653          99 SDY-----V-RCVAVHPTQPFLLTSS---------DDMLIKLWNWEKAWACQQVFEGHT-------------------HY  144 (229)
Q Consensus        99 ~~~-----i-~~v~~~~~~~~~~s~~---------~d~~v~lwd~~~~~~~~~~~~~~~-------------------~~  144 (229)
                      ...     + .+..+..  ..++.++         .++.+...|..+++..-+......                   ..
T Consensus       140 ~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     1 1222222  3344443         357788888876643322111000                   00


Q ss_pred             E-EEEEEcCCCCCEEEEEECCC------------------cEEEEeCCCCCceEEEecCCCce------EEEEEE----e
Q psy4653         145 V-MQIVINPKDNNTFASASLDR------------------TVKVWQLGSASPNFTLEGHEKGV------NCVDYY----H  195 (229)
Q Consensus       145 v-~~~~~~~~~~~~l~s~~~d~------------------~i~~wd~~~~~~~~~~~~h~~~v------~~~~~~----~  195 (229)
                      + ....+.+ .+.+++.++.++                  .+...|..+++.++..+.-....      ....+.    .
T Consensus       218 vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         218 SWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             ccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence            1 1123333 234555565454                  79999999999888765211110      000110    0


Q ss_pred             CCC-cCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         196 GGD-KPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       196 ~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      .+. ...++.++.+|.+.-.|.++|+.+=..
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            111 125778889999999999999876443

The alignment model contains an 8-bladed beta-propeller.

>KOG2314|consensus

Probab=97.93  E-value=0.0031  Score=52.92  Aligned_cols=99  Identities=13%  Similarity=0.231  Sum_probs=73.3

Q ss_pred             CceEEEEEccCCCeEEEEEe-----------cCeEEEEEcCCCCeEEEEEecC--c-CeEEEEEcCCCCEEEEEeCCCeE
Q psy4653          16 DRVKCCDLHPTEPWMLASLY-----------NGHVHVWNHETNQNVKSFEVCD--L-PVRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~-----------dg~v~~wd~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      ..|.-++|||..++|++=+.           ..++.|||+.+|...+.|....  . .-.-..|+.+++++|.-.. .+|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence            47999999999999998542           1589999999999988887632  2 2466789999999987766 458


Q ss_pred             EEEECCCcceEEEeccCCCceeEEEEcCCCCEEE
Q psy4653          82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL  115 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~  115 (229)
                      .|++......+..-.---..|....|+|.+..||
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            9998776443322112235688899999876654

>smart00320 WD40 WD40 repeats

Probab=97.88  E-value=7.5e-05  Score=38.67  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=32.9

Q ss_pred             CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          48 QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +....+..+...+.++.|.+.++.+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566667777899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.87  E-value=0.0027  Score=42.21  Aligned_cols=103  Identities=23%  Similarity=0.349  Sum_probs=67.5

Q ss_pred             eeEEEEcC---CC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc
Q psy4653         102 VRCVAVHP---TQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP  177 (229)
Q Consensus       102 i~~v~~~~---~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  177 (229)
                      |++|++.+   ++ +.|++|+.|..||+|+-++   +...+.. ...|..+.-..  +..|+.+-.+|+|-+|+.  ..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeC--cce
Confidence            45555543   33 4799999999999998543   2333322 23456665443  478999999999999976  345


Q ss_pred             eEEEecCCCceEEEEEEe-CCCc-CEEEEeeCCCeEEE
Q psy4653         178 NFTLEGHEKGVNCVDYYH-GGDK-PYLISGADDRLVKI  213 (229)
Q Consensus       178 ~~~~~~h~~~v~~~~~~~-~~~~-~~l~s~s~d~~i~i  213 (229)
                      ++.++.... +.+++++. ++++ .-|++|-.+|.|.+
T Consensus        74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            666665444 55555543 3333 36899999998853

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.86  E-value=0.004  Score=53.70  Aligned_cols=185  Identities=12%  Similarity=0.028  Sum_probs=114.3

Q ss_pred             EEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC---CC-eEEEEECCCcceEEEe
Q psy4653          21 CDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD---DM-QVCVFNYNTLERFHSF   95 (229)
Q Consensus        21 ~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---d~-~i~iwd~~~~~~~~~~   95 (229)
                      +-++|||..+...+ ..+.+.+.|.++.+....+.... .-..+.++++|+++.+.+.   .| .+...+.+....+..+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            34677887665543 56889999999888777766544 4467789999999887752   22 3334343333322222


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC----ceee-eeeeecceeeEEEEEEcCCCCCEEE-EEECCCcEEE
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK----AWAC-QQVFEGHTHYVMQIVINPKDNNTFA-SASLDRTVKV  169 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~----~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~~  169 (229)
                      ..  ..+.  .+.+++++...+  +++|.+.|...    .... ..+..+  .....+.++| |+.+++ ++..+.++.+
T Consensus       277 ni--~~ie--a~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSP-DGkylyVanklS~tVSV  347 (635)
T PRK02888        277 NI--ARIE--EAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSP-DGKYFIANGKLSPTVTV  347 (635)
T ss_pred             ch--HHHH--HhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECC-CCCEEEEeCCCCCcEEE
Confidence            21  1111  334567766553  67899999876    2222 233222  3356788898 566655 5557999999


Q ss_pred             EeCCCCCce------------EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         170 WQLGSASPN------------FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       170 wd~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .|+...+..            .+.+--. .....+|  .++++...|-.-|..|-.||+.+
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaF--Dg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAF--DGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeeccCC-CcceEEE--CCCCCEEEeEeecceeEEEehHH
Confidence            999765431            1222111 2234566  45666777888999999999876

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.86  E-value=0.0025  Score=56.69  Aligned_cols=194  Identities=13%  Similarity=0.178  Sum_probs=112.3

Q ss_pred             chhhhhcccCCCceEEEEEccC-------CCeEEEEEecCeEEEEEcCCCC--eEEE-EE--ecCcCeEEEEEcCCCCEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPT-------EPWMLASLYNGHVHVWNHETNQ--NVKS-FE--VCDLPVRAAKFVPRKNWI   72 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~-------~~~l~~~~~dg~v~~wd~~~~~--~~~~-~~--~~~~~v~~~~~~~~~~~l   72 (229)
                      -++...+.-|.+. .-..|-|+       ....+.|-.++.+..||.+-..  ++.. ..  .......|++-..+| +|
T Consensus       514 GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~i  591 (794)
T PF08553_consen  514 GKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YI  591 (794)
T ss_pred             CcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eE
Confidence            3444555555432 23445553       3356888899999999987532  3221 11  122356777666555 89


Q ss_pred             EEEeCCCeEEEEECCCcceEE-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC--Cc----------------e-
Q psy4653          73 VTGSDDMQVCVFNYNTLERFH-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KA----------------W-  132 (229)
Q Consensus        73 ~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~--~~----------------~-  132 (229)
                      |+|+.+|.|++||- .++..+ .+.+-.++|..|+.+.+|+.+++.+ +..+.|.+..  .+                . 
T Consensus       592 avgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp  669 (794)
T PF08553_consen  592 AVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKP  669 (794)
T ss_pred             EEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCC
Confidence            99999999999984 333322 3455568999999999999876555 4566677642  10                0 


Q ss_pred             ee--eeeeecce--------ee--EEEEEEcC---CCCCEEEEEECCCcEEEEeCCCC----CceEEEecCCCceEEEEE
Q psy4653         133 AC--QQVFEGHT--------HY--VMQIVINP---KDNNTFASASLDRTVKVWQLGSA----SPNFTLEGHEKGVNCVDY  193 (229)
Q Consensus       133 ~~--~~~~~~~~--------~~--v~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~  193 (229)
                      .+  +++-+.|.        .+  .+...|+.   ..+..|+ .+....+.+|+++..    .....++.-...|.+-.|
T Consensus       670 ~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Iv-tstG~f~v~Wnf~kV~~g~~~~Y~ikry~~~V~~dnF  748 (794)
T PF08553_consen  670 QPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIV-TSTGPFVVTWNFKKVKRGKKDPYQIKRYDENVVADNF  748 (794)
T ss_pred             CCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEE-EeccCEEEEEEHHHHhCCCCCceEEEEcCCceEEccc
Confidence            00  11111121        11  12334442   1234455 456789999998532    234455554556777666


Q ss_pred             EeCCCcCEEE
Q psy4653         194 YHGGDKPYLI  203 (229)
Q Consensus       194 ~~~~~~~~l~  203 (229)
                      ..+.+.++|+
T Consensus       749 ~fg~d~~viv  758 (794)
T PF08553_consen  749 KFGSDKNVIV  758 (794)
T ss_pred             eeCCCCcEEE
Confidence            6666655444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2314|consensus

Probab=97.82  E-value=0.00056  Score=57.13  Aligned_cols=130  Identities=16%  Similarity=0.299  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe
Q psy4653          39 VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS  118 (229)
Q Consensus        39 v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~  118 (229)
                      ...||.........-...+=.-+-+.|+|.|.+|++=...| |.+|--+..+.++.|. |. .|.-+.|||..+||+|=+
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s  268 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYS  268 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEec
Confidence            34476655332221111122357789999999999987777 7899877767777664 54 488999999999998765


Q ss_pred             CC-----------CcEEEEecCCceeeeeeeec--ceeeE-EEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         119 DD-----------MLIKLWNWEKAWACQQVFEG--HTHYV-MQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       119 ~d-----------~~v~lwd~~~~~~~~~~~~~--~~~~v-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      ..           .++.|||+..+. ..+.|..  ....+ .-..|+. ++.++|--.. ..|.+++..+
T Consensus       269 ~~p~~~~~~d~e~~~l~IWDI~tG~-lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtps  335 (698)
T KOG2314|consen  269 PEPIIVEEDDNEGQQLIIWDIATGL-LKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPS  335 (698)
T ss_pred             CCccccCcccCCCceEEEEEccccc-hhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCc
Confidence            32           578999998874 3444433  11112 3345765 6788875554 5688887643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.76  E-value=0.02  Score=48.97  Aligned_cols=183  Identities=8%  Similarity=0.091  Sum_probs=109.7

Q ss_pred             ecCeEEEEEcCCCCeEEEEEecCcC--------------------e-EEEEEcCCCCEEEEEeCCC--------------
Q psy4653          35 YNGHVHVWNHETNQNVKSFEVCDLP--------------------V-RAAKFVPRKNWIVTGSDDM--------------   79 (229)
Q Consensus        35 ~dg~v~~wd~~~~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~l~sg~~d~--------------   79 (229)
                      .+|.|.-.|..+|+.+..+......                    + .+..+.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            3678999999999998887653210                    0 1234445567788887665              


Q ss_pred             ----eEEEEECCCcceEEEeccCCC------ceeEEEEc----CCCC---EEEEEeCCCcEEEEecCCceeeeeeeecce
Q psy4653          80 ----QVCVFNYNTLERFHSFEAHSD------YVRCVAVH----PTQP---FLLTSSDDMLIKLWNWEKAWACQQVFEGHT  142 (229)
Q Consensus        80 ----~i~iwd~~~~~~~~~~~~h~~------~i~~v~~~----~~~~---~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~  142 (229)
                          .+..+|.++++....++.-..      ......+.    -++.   .++.++.+|.+...|.+++...-..-..  
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--  330 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--  330 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence                788999999998877642111      00111111    1222   5778888999999998877443221111  


Q ss_pred             eeEEEEEEcCCCCCEEEE-----------------EECCCcEEEEeCCCCCceEEEecCC--------Cce--EEEEEEe
Q psy4653         143 HYVMQIVINPKDNNTFAS-----------------ASLDRTVKVWQLGSASPNFTLEGHE--------KGV--NCVDYYH  195 (229)
Q Consensus       143 ~~v~~~~~~~~~~~~l~s-----------------~~~d~~i~~wd~~~~~~~~~~~~h~--------~~v--~~~~~~~  195 (229)
                        ...+...|  +..++.                 ...++.+...|+.+++.+++.....        ...  ..+..  
T Consensus       331 --~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--  404 (488)
T cd00216         331 --EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--  404 (488)
T ss_pred             --ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--
Confidence              00111222  112221                 1246788888998888877665321        011  11122  


Q ss_pred             CCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       196 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                        .+.+|+.++.||.++-+|.++|+.+-+.+.
T Consensus       405 --~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         405 --AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             --cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence              234788889999999999999998766553

The alignment model contains an 8-bladed beta-propeller.

>KOG1920|consensus

Probab=97.76  E-value=0.0012  Score=59.87  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=92.7

Q ss_pred             EEEEEccCCCeEEEEE----ec-CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCc-
Q psy4653          19 KCCDLHPTEPWMLASL----YN-GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS---DDMQVCVFNYNTL-   89 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~----~d-g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~d~~i~iwd~~~~-   89 (229)
                      ..+.|--||.++++..    .+ ..|++||.+ |.+...-.....--.+++|-|.|.++++-.   +|+.|.+|.-+.- 
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            4679999999988843    23 799999998 444322222223357899999999988874   4557888875532 


Q ss_pred             --ceEEEeccCCCceeEEEEcCCCCEEEE---EeCCCcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          90 --ERFHSFEAHSDYVRCVAVHPTQPFLLT---SSDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        90 --~~~~~~~~h~~~i~~v~~~~~~~~~~s---~~~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                        .-.-.+......|..++|+.++..|++   ......|++|-+.+.. ...+.+.-..  ..-+.|+|.....+..-..
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~--~~~~~W~p~~~~~L~v~~~  355 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ--KALLMWDPVTEKTLHVLRE  355 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc--cccccccCCCceeEEEEec
Confidence              222223333445899999999998876   4444559999986642 2222211111  1116677755554444445


Q ss_pred             CCcEEEEeC
Q psy4653         164 DRTVKVWQL  172 (229)
Q Consensus       164 d~~i~~wd~  172 (229)
                      +|...++|+
T Consensus       356 sG~~~v~~~  364 (1265)
T KOG1920|consen  356 SGQRLVRDF  364 (1265)
T ss_pred             CCcEEEEEE
Confidence            665555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.018  Score=48.47  Aligned_cols=145  Identities=14%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCc
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN-YNTL   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd-~~~~   89 (229)
                      +....-....+.++|.++++++ +.||.-.++.....+... +    .......|.++ +.+|+-...++|.|+. ++ .
T Consensus        28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~-~   99 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-F----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFK-N   99 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-E----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTE-E
T ss_pred             CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-c----CceeEEEEecC-ccEEEEECCCeEEEEEcCc-c
Confidence            4444445789999999998888 778888888855443322 2    23455778884 4566666688899973 32 1


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      +.+..++.. -.+..+-.   |..|+..+.+ .|.+||+++.....++ .  ..+|..+.|++ ++.+++-.+.+ .+.+
T Consensus       100 ~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i-~--v~~vk~V~Ws~-~g~~val~t~~-~i~i  169 (443)
T PF04053_consen  100 EVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRI-D--VSAVKYVIWSD-DGELVALVTKD-SIYI  169 (443)
T ss_dssp             -TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEE-S--S-E-EEEEE-T-TSSEEEEE-S--SEEE
T ss_pred             ccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEE-e--cCCCcEEEEEC-CCCEEEEEeCC-eEEE
Confidence            222222221 12333322   7777776655 8999999877444443 2  23478899997 67788877654 6777


Q ss_pred             EeCC
Q psy4653         170 WQLG  173 (229)
Q Consensus       170 wd~~  173 (229)
                      ++..
T Consensus       170 l~~~  173 (443)
T PF04053_consen  170 LKYN  173 (443)
T ss_dssp             EEE-
T ss_pred             EEec
Confidence            7654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.71  E-value=0.002  Score=57.28  Aligned_cols=139  Identities=12%  Similarity=0.164  Sum_probs=97.8

Q ss_pred             CeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC-------CCEEEEEeCCCeEEEEECCCc--ceEE----
Q psy4653          28 PWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-------KNWIVTGSDDMQVCVFNYNTL--ERFH----   93 (229)
Q Consensus        28 ~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~sg~~d~~i~iwd~~~~--~~~~----   93 (229)
                      ..++.. ...+.|+-.|++.|+.+..+..+... .-..|.|+       ......|-.+..+.-||++-.  +.+.    
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            344443 45688999999999999999887643 23445553       234577888999999998643  2221    


Q ss_pred             EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          94 SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      .+ ......+|++-..+| ++|.|+.+|.||+||- .+......+++-..+|..+.++. ||.++++-+ +..+.|.+.
T Consensus       573 ~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  573 QY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEE
Confidence            12 123446788777766 6889999999999994 33345666777788999999986 788887544 667888774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.69  E-value=0.0027  Score=49.20  Aligned_cols=198  Identities=9%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEec-----CeEEEEEcCCC-CeEEEEEecCcCeEEEEEcCCCCEEEEEeC--
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYN-----GHVHVWNHETN-QNVKSFEVCDLPVRAAKFVPRKNWIVTGSD--   77 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----g~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--   77 (229)
                      +..++|.||.      .|||||.+|.++-.|     |-|-+||.+.+ +.+..+..+...-..+.+.++|+.++.+..  
T Consensus       110 ~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGI  183 (366)
T COG3490         110 QEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGI  183 (366)
T ss_pred             ccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCce
Confidence            4567788997      799999999998654     67999999854 234456666656677889999999887643  


Q ss_pred             ----C-C-----------eEEEEECCCcceEE--Eec--cCCCceeEEEEcCCCCEEEEEeCCCc-------EEEEecCC
Q psy4653          78 ----D-M-----------QVCVFNYNTLERFH--SFE--AHSDYVRCVAVHPTQPFLLTSSDDML-------IKLWNWEK  130 (229)
Q Consensus        78 ----d-~-----------~i~iwd~~~~~~~~--~~~--~h~~~i~~v~~~~~~~~~~s~~~d~~-------v~lwd~~~  130 (229)
                          | |           ++.+.|..++..+.  .+.  .+.-+|+.++..+++...+.+=..|.       |-...-.+
T Consensus       184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~  263 (366)
T COG3490         184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE  263 (366)
T ss_pred             ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence                1 1           22222322332221  122  34456778888887766554422221       00100000


Q ss_pred             ceee----eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee
Q psy4653         131 AWAC----QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       131 ~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                      ..+.    +.....-..+|-+++.+..++-..+|+=..+...+||..++..+....--  ....++..  ..+  ++..+
T Consensus       264 ~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~~--~~g--f~vss  337 (366)
T COG3490         264 PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAAA--KGG--FAVSS  337 (366)
T ss_pred             cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccceec--cCc--eEEec
Confidence            0000    00111224567788888666666666667888999999988754332211  11112221  122  45566


Q ss_pred             CCCeEEEEE
Q psy4653         207 DDRLVKIWD  215 (229)
Q Consensus       207 ~d~~i~iwd  215 (229)
                      .+|.+.++.
T Consensus       338 g~G~~~~~s  346 (366)
T COG3490         338 GQGRIIFYS  346 (366)
T ss_pred             CCceEEecc
Confidence            678887764

>KOG4649|consensus

Probab=97.64  E-value=0.016  Score=44.42  Aligned_cols=191  Identities=12%  Similarity=0.095  Sum_probs=108.3

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEE
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA  106 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~  106 (229)
                      |++++.|+..|.+.+-+.++|.....+...+.--......+++.++.+|+.|++....|+.+..++...+....-..+-+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV  142 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence            45788899999999999999988888876654333344577899999999999999999999888887765544444455


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc--eeeEEE--------EEEcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653         107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH--THYVMQ--------IVINPKDNNTFASASLDRTVKVWQLGSAS  176 (229)
Q Consensus       107 ~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~--~~~v~~--------~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  176 (229)
                      +.|-...+..+...|.|.--.....  ....+-.|  .+++..        +.+...++.++. =+..| -.+|..+++-
T Consensus       143 i~~g~~sly~a~t~G~vlavt~~~~--~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~-f~~sG-~qvwr~~t~G  218 (354)
T KOG4649|consen  143 IAPGDGSLYAAITAGAVLAVTKNPY--SSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTS-FDESG-RQVWRPATKG  218 (354)
T ss_pred             ecCCCceEEEEeccceEEEEccCCC--CcceehhhhcCCccccCceeccceEEEEEeccEEEE-EcCCC-cEEEeecCCC
Confidence            5663333333444454443332211  01111001  111111        011111333332 23333 4577777777


Q ss_pred             ceEEEecCCCce-EEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         177 PNFTLEGHEKGV-NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       177 ~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +++.-+..+.+. ..+.+.   +.+.+.+.-....-.+|..++|...+.
T Consensus       219 pIf~~Pc~s~Ps~q~i~~~---~~~Cf~~~~p~~ghL~w~~~~g~t~~v  264 (354)
T KOG4649|consen  219 PIFMEPCESRPSCQQISLE---NENCFCAPLPIAGHLLWATQSGTTLHV  264 (354)
T ss_pred             ceecccccCCCcceEEEEe---cCCeEEEeccccceEEEEecCCcEEEE
Confidence            777665544332 334442   122344444334456777777654443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.63  E-value=0.023  Score=47.08  Aligned_cols=172  Identities=10%  Similarity=0.111  Sum_probs=96.4

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec--------CcCeEEEEEcC-----CC---CEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC--------DLPVRAAKFVP-----RK---NWIVT   74 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--------~~~v~~~~~~~-----~~---~~l~s   74 (229)
                      +.....+|.+++.+.-| ++++|..+|++.+.|++....+..-...        ...++++.|..     ++   -.|++
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            34446899999998445 8888889999999999988776652211        23577887862     22   36899


Q ss_pred             EeCCCeEEEEECC--Ccce-----EEEeccCCCceeEEE-EcCC--------------------CCEEEEEeCCCcEEEE
Q psy4653          75 GSDDMQVCVFNYN--TLER-----FHSFEAHSDYVRCVA-VHPT--------------------QPFLLTSSDDMLIKLW  126 (229)
Q Consensus        75 g~~d~~i~iwd~~--~~~~-----~~~~~~h~~~i~~v~-~~~~--------------------~~~~~s~~~d~~v~lw  126 (229)
                      |++.|.+.+|.+-  .+..     ......+.+.|..+. |+.+                    -+.++....+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            9999999999763  2221     112223455555544 3222                    1235555668899999


Q ss_pred             ecCCceeeeeeeecceeeEEEEEEc----CCCCCEEEEEECCCcEEEEeCCCCCceEEEecC
Q psy4653         127 NWEKAWACQQVFEGHTHYVMQIVIN----PKDNNTFASASLDRTVKVWQLGSASPNFTLEGH  184 (229)
Q Consensus       127 d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h  184 (229)
                      ...+.+...+.++.+. ....+.+-    ...+..|++-..+|.|+++.+..-+++..++..
T Consensus       241 ~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             -TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             eCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence            9877655555553211 11112221    113557777889999999999887777766553

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2444|consensus

Probab=97.59  E-value=0.0003  Score=52.42  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=71.0

Q ss_pred             CeEEEEEecCeEEEEEcCC-CCeEEEEEecCcCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-CceeE
Q psy4653          28 PWMLASLYNGHVHVWNHET-NQNVKSFEVCDLPV-RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS-DYVRC  104 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v-~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~  104 (229)
                      .-|+.|+.+|.|.+|+++- +.....+......+ ..+.-..++++..++..||.|+.|++...+.+.....|. ..+..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~  150 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE  150 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence            4678888999999998872 11111111122222 333334456789999999999999999998887777777 56666


Q ss_pred             EEEcCCCCEEEEE--eCCCcEEEEecCC
Q psy4653         105 VAVHPTQPFLLTS--SDDMLIKLWNWEK  130 (229)
Q Consensus       105 v~~~~~~~~~~s~--~~d~~v~lwd~~~  130 (229)
                      +..+..+..+..+  |.|..++.|+++.
T Consensus       151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  151 LIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eEEecCCceEEeeccccchhhhhcchhh
Confidence            6666666777666  7777788888754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.55  E-value=0.01  Score=49.58  Aligned_cols=161  Identities=14%  Similarity=0.124  Sum_probs=96.8

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEe---c-CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCE-EEEEeCCCeEE--E
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLY---N-GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW-IVTGSDDMQVC--V   83 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~---d-g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d~~i~--i   83 (229)
                      +..-...+..-+|+|+++.++....   . ..+.++|+++++...... .......-.|+|+|+. +++...||...  +
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            3333456777789999988877642   2 359999999987755543 2334556679999985 55666777644  4


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCc--EEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDML--IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~--v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      .|+.... +..+....+.-..-.|+|+|+.++ +++..|.  |.+.+++.....+.++.+...  ....|+| ++.+++.
T Consensus       267 ~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~Sp-dG~~i~~  342 (425)
T COG0823         267 MDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSP-DGDKIVF  342 (425)
T ss_pred             EcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCC-CCCEEEE
Confidence            5666544 333332223333668999999764 6666665  555555544332333322221  2556787 6777776


Q ss_pred             EEC-CCc--EEEEeCCCCC
Q psy4653         161 ASL-DRT--VKVWQLGSAS  176 (229)
Q Consensus       161 ~~~-d~~--i~~wd~~~~~  176 (229)
                      .+. ++.  |.+.|+.++.
T Consensus       343 ~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EeccCCceeeEEeccCCCC
Confidence            553 344  5566665444

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.54  E-value=0.0068  Score=52.32  Aligned_cols=93  Identities=15%  Similarity=0.078  Sum_probs=65.1

Q ss_pred             cCeEEEEEcCC----C-CeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCcce------------EEEecc
Q psy4653          36 NGHVHVWNHET----N-QNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLER------------FHSFEA   97 (229)
Q Consensus        36 dg~v~~wd~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~------------~~~~~~   97 (229)
                      ++.|.+.|..+    + +.+..+. .......+.++|+|+++++++ .+..+.+.|++..+.            +.+.+-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            35688888887    3 3334433 344678899999999876655 478999999987553            222222


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK  130 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~  130 (229)
                      -.++ ...+|.++|..+.|---|.+|..||++.
T Consensus       374 GlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            1121 3678899988888888899999999865

>KOG3621|consensus

Probab=97.48  E-value=0.002  Score=55.30  Aligned_cols=134  Identities=14%  Similarity=0.168  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q psy4653          60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF  138 (229)
Q Consensus        60 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~  138 (229)
                      +.--++...+++|+.|+.-|.+.+++-..++... ...+-...+....+|+...+++.|+..|.|.++-+....+....+
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            4444556678999999999999999877665432 222234456667889999999999999999999886643322222


Q ss_pred             -----ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC----CceEEEecCCCceEEEEEE
Q psy4653         139 -----EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA----SPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       139 -----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~~  194 (229)
                           ..|...|+++.|++ ++..+.+|...|+|.+-.+...    .....+-.-...|..+++.
T Consensus       116 ~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             eccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence                 23667899999997 7899999999999999887662    1112222223456667763

>KOG2395|consensus

Probab=97.43  E-value=0.0036  Score=52.34  Aligned_cols=145  Identities=10%  Similarity=0.169  Sum_probs=100.6

Q ss_pred             EccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCE-------EEEEeCCCeEEEEECCCcc--eE
Q psy4653          23 LHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW-------IVTGSDDMQVCVFNYNTLE--RF   92 (229)
Q Consensus        23 ~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~sg~~d~~i~iwd~~~~~--~~   92 (229)
                      ...+.+.++. +..-..++-.|++.|+.+..+..+.+ |.-+.+.|+.+.       -+.|-.|..|.=||++...  .+
T Consensus       341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            3344455555 45567888899999999999888776 788888887532       3567788899999986432  23


Q ss_pred             EEeccCC----CceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          93 HSFEAHS----DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        93 ~~~~~h~----~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ...++|+    .-..|.+-..+| +++.||.+|.|||||- ........+++-..+|..+..+. +|..++. ..+.++.
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvta-dGKwil~-Tc~tyLl  495 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTA-DGKWILA-TCKTYLL  495 (644)
T ss_pred             eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeec-cCcEEEE-ecccEEE
Confidence            3333332    123455444443 7889999999999996 34345667788888999999886 6777764 4466777


Q ss_pred             EEeC
Q psy4653         169 VWQL  172 (229)
Q Consensus       169 ~wd~  172 (229)
                      +-|.
T Consensus       496 Li~t  499 (644)
T KOG2395|consen  496 LIDT  499 (644)
T ss_pred             EEEE
Confidence            7765

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.43  E-value=0.054  Score=45.21  Aligned_cols=204  Identities=14%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             CceEEEEEccCCCeEEEEE-ecC----eEEEEEcCCCCeEEE-EEecCcCeEEEEEcCCCCEEEEEeCCC----------
Q psy4653          16 DRVKCCDLHPTEPWMLASL-YNG----HVHVWNHETNQNVKS-FEVCDLPVRAAKFVPRKNWIVTGSDDM----------   79 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~-~dg----~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~d~----------   79 (229)
                      ..+....++|+++++|.+. ..|    .+++.|+.+++.+.. +...  ....+.|.++++.|+-...+.          
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            3455788999999998774 444    499999999977543 2221  223499999988765554332          


Q ss_pred             -eEEEEECCCcce--EEEeccCCC-c-eeEEEEcCCCCEEEE-EeCC---CcEEEEecCCc----eeeeeeeecceeeEE
Q psy4653          80 -QVCVFNYNTLER--FHSFEAHSD-Y-VRCVAVHPTQPFLLT-SSDD---MLIKLWNWEKA----WACQQVFEGHTHYVM  146 (229)
Q Consensus        80 -~i~iwd~~~~~~--~~~~~~h~~-~-i~~v~~~~~~~~~~s-~~~d---~~v~lwd~~~~----~~~~~~~~~~~~~v~  146 (229)
                       .|..|++.+...  ...+..... . ...+..++++++++. ....   ..+.+-|+...    .....+.....+...
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence             377777766432  234443332 3 567889999998653 3332   34777787653    122222222222222


Q ss_pred             EEEEcCCCCCEEEEE--ECCCcEEEEeCCCCCc---eEEEecCCCc--eEEEEEEeCCCcCEEEEeeCCCe--EEEEECC
Q psy4653         147 QIVINPKDNNTFASA--SLDRTVKVWQLGSASP---NFTLEGHEKG--VNCVDYYHGGDKPYLISGADDRL--VKIWDYQ  217 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~---~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~~--i~iwd~~  217 (229)
                      .+... .+.-++.|.  ...+.|...++.....   ...+..+...  +..+..  ..+ .+++.-..++.  |++++..
T Consensus       282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~-~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKD-YLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETT-EEEEEEEETTEEEEEEEETT
T ss_pred             EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECC-EEEEEEEECCccEEEEEECC
Confidence            23222 222233343  2345676777766553   2255556553  444443  222 35666666654  7788888


Q ss_pred             CCeEEEee
Q psy4653         218 NKTCVQTL  225 (229)
Q Consensus       218 ~~~~~~~~  225 (229)
                      .+.....+
T Consensus       358 ~~~~~~~~  365 (414)
T PF02897_consen  358 DGKESREI  365 (414)
T ss_dssp             -TEEEEEE
T ss_pred             CCcEEeee
Confidence            44444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.41  E-value=0.047  Score=43.99  Aligned_cols=173  Identities=13%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             CeEEEEEcCCCCeEEEEEecCc-CeEEEE---EcCC----CCEEEEEeC---------C-CeEEEEECCCc----ceEEE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDL-PVRAAK---FVPR----KNWIVTGSD---------D-MQVCVFNYNTL----ERFHS   94 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~-~v~~~~---~~~~----~~~l~sg~~---------d-~~i~iwd~~~~----~~~~~   94 (229)
                      ..|++.|..+.+.+..+...+. .+.++.   +..+    ..+|++|+.         . |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4689999999888877765542 344443   3332    467888864         2 88999998773    22222


Q ss_pred             e--ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          95 F--EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        95 ~--~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      .  ....+.|.+++-- .+. ++.+. .+.|.+|++.... .....+......+.++...   +++++.|.....+.++.
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence            2  2236778888776 333 43333 4799999997765 2223222223355666553   45888888888888886


Q ss_pred             CCCCCc-eEEEe--cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         172 LGSASP-NFTLE--GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       172 ~~~~~~-~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      ++.... +..+.  .....+.++.|...+  ..++.+..+|.+.++...
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEEC
Confidence            654322 22222  233457777776443  378899999999998876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.31  E-value=0.011  Score=51.41  Aligned_cols=144  Identities=6%  Similarity=0.037  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCcceEE--EeccCCCceeEEEEcCCCCEEEEEeCCC-------------------
Q psy4653          68 RKNWIVTGSDDM-----QVCVFNYNTLERFH--SFEAHSDYVRCVAVHPTQPFLLTSSDDM-------------------  121 (229)
Q Consensus        68 ~~~~l~sg~~d~-----~i~iwd~~~~~~~~--~~~~h~~~i~~v~~~~~~~~~~s~~~d~-------------------  121 (229)
                      +++..+.|+.++     .+..||+.+.+...  .+.........+.  -++.+.+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            567777777654     47788887654322  1111111111222  2566777776542                   


Q ss_pred             ----cEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC------cEEEEeCCC-C--CceEEEecCCCc
Q psy4653         122 ----LIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLDR------TVKVWQLGS-A--SPNFTLEGHEKG  187 (229)
Q Consensus       122 ----~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~-~--~~~~~~~~h~~~  187 (229)
                          ++..||.+.. |.....+.........+.+   ++.+.+.|+.++      .+..||..+ .  ..+..++.....
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                4667886543 3221111111111111222   456777777542      356788765 2  222233332223


Q ss_pred             eEEEEEEeCCCcCEEEEeeCCC--eEEEEECCCCe
Q psy4653         188 VNCVDYYHGGDKPYLISGADDR--LVKIWDYQNKT  220 (229)
Q Consensus       188 v~~~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~  220 (229)
                      ...+.+    ++.+.+.|+.|+  .+..||..+.+
T Consensus       506 ~~~~~~----~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        506 LHTILH----DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ceeEEE----CCEEEEEeeecceeehhhcCccccc
Confidence            333333    345778888888  77888887653

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.31  E-value=0.084  Score=46.18  Aligned_cols=148  Identities=8%  Similarity=-0.034  Sum_probs=81.3

Q ss_pred             CceEEEEEccCCCeEEEEE------ecC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---------
Q psy4653          16 DRVKCCDLHPTEPWMLASL------YNG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---------   78 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~------~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---------   78 (229)
                      ..+.+.+++|++..++...      .|.  .+.+++.. +.. ..+.... ....-.|+|+|+.|.+....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999887766      244  44445542 222 3332222 37778899998877766433         


Q ss_pred             ---CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEE---EecCCceeee----eeeecceeeEEEE
Q psy4653          79 ---MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL---WNWEKAWACQ----QVFEGHTHYVMQI  148 (229)
Q Consensus        79 ---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~l---wd~~~~~~~~----~~~~~~~~~v~~~  148 (229)
                         +.+.+.+++.++...   .....|..+.|||||..++... +++|.+   -.-..+....    .+..+-...+..+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               222222333322211   2245799999999999876544 467776   3322222111    1112222234677


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeC
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      .|.. ++. |+.+..+....+|-+
T Consensus       503 ~W~~-~~~-L~V~~~~~~~~v~~v  524 (591)
T PRK13616        503 DWRT-GDS-LVVGRSDPEHPVWYV  524 (591)
T ss_pred             eEec-CCE-EEEEecCCCCceEEE
Confidence            8875 344 444554444445543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.27  E-value=0.024  Score=37.78  Aligned_cols=99  Identities=14%  Similarity=0.103  Sum_probs=67.0

Q ss_pred             eEEEEEcc---C-CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          18 VKCCDLHP---T-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        18 v~~~~~~p---~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      |.++++..   + .+-|++|+.|..|++|+-..  .+..+. ....+.++.-... ..++.|..+|+|-+|+-  ..++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            66676654   3 25899999999999998663  334433 3346777877765 67899999999999975  35566


Q ss_pred             EeccCCCceeEEEEc-CCC---CEEEEEeCCCcE
Q psy4653          94 SFEAHSDYVRCVAVH-PTQ---PFLLTSSDDMLI  123 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~-~~~---~~~~s~~~d~~v  123 (229)
                      ..+.-.. +.++.+. .++   +-|++|=.+|.|
T Consensus        76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeE
Confidence            6654333 5555443 332   257888777766

>KOG2079|consensus

Probab=97.24  E-value=0.0017  Score=58.38  Aligned_cols=105  Identities=19%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             EEccCCCeEEEEEecCeEEEEEcCCCCeE-EEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q psy4653          22 DLHPTEPWMLASLYNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD  100 (229)
Q Consensus        22 ~~~p~~~~l~~~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~  100 (229)
                      +---.+..+++|+..|+|...|..+.-.. ..=.....+|.+++|+.+|..++.|-.+|.|.+||..+++.++.+..|..
T Consensus        94 s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   94 SSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            33334556888888899999888764110 11112346899999999999999999999999999999998888776665


Q ss_pred             cee---EEEEcCCCCEEEEEeCCCcEEEEec
Q psy4653         101 YVR---CVAVHPTQPFLLTSSDDMLIKLWNW  128 (229)
Q Consensus       101 ~i~---~v~~~~~~~~~~s~~~d~~v~lwd~  128 (229)
                      +..   .+.+..+...++++..-|+  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            544   4455556667888877776  4553

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.24  E-value=0.082  Score=43.26  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEE---------ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          24 HPTEPWMLASL---------YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        24 ~p~~~~l~~~~---------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      |||+++++...         ..+.+.++|+++++....... ...+....|+|+|+.++-.. ++.|.+.+..+++..+-
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            57777776632         346789999999766444333 45788999999999988874 67899998876654322


Q ss_pred             e-ccC----------------CCceeEEEEcCCCCEEEEE-eCCCcEEEEec
Q psy4653          95 F-EAH----------------SDYVRCVAVHPTQPFLLTS-SDDMLIKLWNW  128 (229)
Q Consensus        95 ~-~~h----------------~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~  128 (229)
                      . .+-                -+.-.++.|||++++|+.. -.+..|..+.+
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence            1 110                0122578999999987755 34456665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.20  E-value=0.1  Score=44.00  Aligned_cols=146  Identities=12%  Similarity=0.151  Sum_probs=77.0

Q ss_pred             EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEE-ecCCce
Q psy4653          54 EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW-NWEKAW  132 (229)
Q Consensus        54 ~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lw-d~~~~~  132 (229)
                      ...+.....+.++|+|+.+++ ..||.-.|+......... +    +.-....|.+. ..+++-...++|.++ ++++. 
T Consensus        29 g~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~-  100 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-F----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE-  100 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-E----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE--
T ss_pred             CCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-c----CceeEEEEecC-ccEEEEECCCeEEEEEcCccc-
Confidence            344556789999999999888 467777777643332211 1    22346788884 456666668899996 33221 


Q ss_pred             eeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653         133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK  212 (229)
Q Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~  212 (229)
                      .........  .+..+.  +  |.+|...+.+ .|.+||..+++.+..+...  +|..+-|  ++++.+++-.+.+ .+.
T Consensus       101 ~~k~i~~~~--~~~~If--~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W--s~~g~~val~t~~-~i~  168 (443)
T PF04053_consen  101 VVKSIKLPF--SVEKIF--G--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW--SDDGELVALVTKD-SIY  168 (443)
T ss_dssp             TT-----SS---EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE---TTSSEEEEE-S--SEE
T ss_pred             cceEEcCCc--ccceEE--c--CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE--ECCCCEEEEEeCC-eEE
Confidence            111111111  122222  1  5566655544 8999999999888877643  3677777  4556677777655 677


Q ss_pred             EEECCCC
Q psy4653         213 IWDYQNK  219 (229)
Q Consensus       213 iwd~~~~  219 (229)
                      |++.+..
T Consensus       169 il~~~~~  175 (443)
T PF04053_consen  169 ILKYNLE  175 (443)
T ss_dssp             EEEE-HH
T ss_pred             EEEecch
Confidence            8776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.20  E-value=0.0017  Score=36.20  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHE   45 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~   45 (229)
                      ..+|.+++|+|..+.+|.+..+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3479999999999999999999999999983

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.18  E-value=0.13  Score=44.59  Aligned_cols=193  Identities=9%  Similarity=0.084  Sum_probs=109.3

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCc-CeE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDL-PVR---A-------AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~---~-------~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      +..+++++.++.|.-.|..+|+.+..+..... .+.   +       +.+  .+..++.++.|+.+...|.++++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            45677788889999999999999888754221 111   1       111  2346777888999999999999988765


Q ss_pred             ccC--CC--ceeE-EEEcCCCCEEEEEe------CCCcEEEEecCCceeeeeee--ecc---------------------
Q psy4653          96 EAH--SD--YVRC-VAVHPTQPFLLTSS------DDMLIKLWNWEKAWACQQVF--EGH---------------------  141 (229)
Q Consensus        96 ~~h--~~--~i~~-v~~~~~~~~~~s~~------~d~~v~lwd~~~~~~~~~~~--~~~---------------------  141 (229)
                      ...  ..  .+.+ -.+. ++. ++.+.      .++.|..+|.++++..-+..  ...                     
T Consensus       147 ~~~~~~~~~~~tssP~v~-~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ccccccccccccCCcEEE-CCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            421  11  1111 1111 233 33332      26788888877653321110  000                     


Q ss_pred             -------eeeE-EEEEEcCCCCCEEE-EEE---CCC-----------cEEEEeCCCCCceEEEecCCCce---------E
Q psy4653         142 -------THYV-MQIVINPKDNNTFA-SAS---LDR-----------TVKVWQLGSASPNFTLEGHEKGV---------N  189 (229)
Q Consensus       142 -------~~~v-~~~~~~~~~~~~l~-s~~---~d~-----------~i~~wd~~~~~~~~~~~~h~~~v---------~  189 (229)
                             ...+ ....+.|..+.+++ +|.   .++           .|.--|+++++..+.++.....+         .
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                   0011 12244553332222 221   122           67777888888887776422211         1


Q ss_pred             EEEEEeCCC-cCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         190 CVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       190 ~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      -++...++. ...++.+..+|.+.+.|-++|+.+.
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            222211221 1378889999999999999999873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.18  E-value=0.17  Score=45.66  Aligned_cols=198  Identities=10%  Similarity=0.100  Sum_probs=114.4

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP--------VRAAKFVP----------------RKNWIVTGSDDMQVC   82 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~sg~~d~~i~   82 (229)
                      +..++.++.++.|.-.|..||+.+..+......        .+.+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457788888999999999999999887643211        22233321                234788889999999


Q ss_pred             EEECCCcceEEEeccCCCcee-------------EEEEcC--CCCEEEEEeC----------CCcEEEEecCCceeeeee
Q psy4653          83 VFNYNTLERFHSFEAHSDYVR-------------CVAVHP--TQPFLLTSSD----------DMLIKLWNWEKAWACQQV  137 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~-------------~v~~~~--~~~~~~s~~~----------d~~v~lwd~~~~~~~~~~  137 (229)
                      -.|.++++.+..+... +.|.             .+.-.|  .+..++.|+.          +|.|+-+|.++++..-+.
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999988776421 1110             011111  1234555532          578999998776443221


Q ss_pred             eecc----------------eeeE-EEEEEcCCCCCEEE-EE----------------ECCCcEEEEeCCCCCceEEEec
Q psy4653         138 FEGH----------------THYV-MQIVINPKDNNTFA-SA----------------SLDRTVKVWQLGSASPNFTLEG  183 (229)
Q Consensus       138 ~~~~----------------~~~v-~~~~~~~~~~~~l~-s~----------------~~d~~i~~wd~~~~~~~~~~~~  183 (229)
                      ..+.                ...+ ....+++..+..++ +|                -..+.|.-.|.++++..+.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            1100                0000 12233332222111 11                1235677778888888877764


Q ss_pred             CCCc---------eEEEEEEe-CC-CcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         184 HEKG---------VNCVDYYH-GG-DKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       184 h~~~---------v~~~~~~~-~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ....         ..-+++.. ++ ....++.+..+|.+.+.|-++|+.+-..
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            1111         11223321 11 1237888999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4649|consensus

Probab=97.10  E-value=0.083  Score=40.70  Aligned_cols=138  Identities=11%  Similarity=0.041  Sum_probs=88.8

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEE
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA  106 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~  106 (229)
                      ..+++.|+..+.+.--|..+|+.+..-... ..+-+-+.. -|++++.|...|.+.+.+.+++..+..+..-..--..-.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            456777899999999999999886653221 223222222 477899999999999999999988777764433223345


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653         107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus       107 ~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ..+++..+..++.|+....-|.+..... ...+...+.....+++|.++.++++ ...|.+.
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cV-ykskcgG~~f~sP~i~~g~~sly~a-~t~G~vl  160 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVL  160 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceE-EecccCCceeccceecCCCceEEEE-eccceEE
Confidence            5778889999999999999998765322 2222222222334455644444443 3344333

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.13  Score=42.63  Aligned_cols=203  Identities=15%  Similarity=0.095  Sum_probs=127.1

Q ss_pred             EEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEE
Q psy4653          19 KCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD---DMQVCVFNYNTLERFHS   94 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~   94 (229)
                      ..++.++.++.+.+. ..++.|.+.|..+.+......... .-..+.++|+++.+.++..   ++.+.+.|..+.+.+..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            466788888755554 456999999988877766655444 5677899999987766665   57889999988887776


Q ss_pred             eccCCCceeEEEEcCCCCEEEEE-eCCCcEEEEecCCceeee-e---eeecceeeEEEEEEcCCCCCEEEEEECC--CcE
Q psy4653          95 FEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQ-Q---VFEGHTHYVMQIVINPKDNNTFASASLD--RTV  167 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i  167 (229)
                      ...-..+ ..+++.|++..+... ..++.|.+.|........ .   .. .-......+.++|......++...+  +.+
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            5443344 789999999966544 578899999976542221 0   01 1112235667777433344443333  588


Q ss_pred             EEEeCCCCCceEE-EecCCCceEEEEEEeCCCcCEEEEe-eCCCeEEEEECCCCeEEEeec
Q psy4653         168 KVWQLGSASPNFT-LEGHEKGVNCVDYYHGGDKPYLISG-ADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       168 ~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ...|..++..... +..-......+...+  .+..+... +..+.+.+-|..+.....+..
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p--~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAPRGVAVDP--AGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             EEEeCCCceEEEeccccccCCCCceeECC--CCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            8888876654333 111111223344433  33344433 335788888888777666543

>KOG2395|consensus

Probab=97.08  E-value=0.022  Score=47.87  Aligned_cols=144  Identities=11%  Similarity=0.151  Sum_probs=89.5

Q ss_pred             CCCC-EEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCC-------EEEEEeCCCcEEEEecCCcee-eeee
Q psy4653          67 PRKN-WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-------FLLTSSDDMLIKLWNWEKAWA-CQQV  137 (229)
Q Consensus        67 ~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-------~~~s~~~d~~v~lwd~~~~~~-~~~~  137 (229)
                      .+.+ +|.++.....+.-.|++.|+.+..++-+.+ |+-+.+.|+.+       .-+.|-.|+.|.-||.+-... ....
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            3344 355666666788889999999999887766 88888888754       234566788999999864332 2222


Q ss_pred             eecce---ee-EEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEE
Q psy4653         138 FEGHT---HY-VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  213 (229)
Q Consensus       138 ~~~~~---~~-v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~i  213 (229)
                      -++|.   +. ..+.+ . ....+++.||.+|.||+||.-.......+++-..+|..++...  ++..|++ ..+..+.+
T Consensus       422 ~q~kqy~~k~nFsc~a-T-T~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta--dGKwil~-Tc~tyLlL  496 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFA-T-TESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA--DGKWILA-TCKTYLLL  496 (644)
T ss_pred             eeccccccccccceee-e-cCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec--cCcEEEE-ecccEEEE
Confidence            23331   11 12222 2 2456999999999999999722222223566566787777744  3334332 33445555


Q ss_pred             EEC
Q psy4653         214 WDY  216 (229)
Q Consensus       214 wd~  216 (229)
                      -+.
T Consensus       497 i~t  499 (644)
T KOG2395|consen  497 IDT  499 (644)
T ss_pred             EEE
Confidence            443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.07  E-value=0.11  Score=41.78  Aligned_cols=141  Identities=12%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             CCeEEEEEe---------c-CeEEEEEcCCC----CeEEEE--EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          27 EPWMLASLY---------N-GHVHVWNHETN----QNVKSF--EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        27 ~~~l~~~~~---------d-g~v~~wd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      .+++++|+.         . |.|.++++...    ..+...  ...+.+|.++.-. +++ |+++ .++.|.+|+++..+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc
Confidence            577888764         1 88999999984    122222  1235688888777 444 4444 35889999987766


Q ss_pred             eEEEeccCC--CceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeee-eecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          91 RFHSFEAHS--DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQQV-FEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        91 ~~~~~~~h~--~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      .+.....+.  -.+.++...  +.+++.|...+.+.++..+.... ...+ .......++++.+-+. ++.++.+..+|.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d-~~~~i~~D~~gn  195 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD-EDTIIVGDKDGN  195 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S-SSEEEEEETTSE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC-CcEEEEEcCCCe
Confidence            232222222  245555555  55999999889998886543222 2221 1222445677766543 358888999999


Q ss_pred             EEEEeCC
Q psy4653         167 VKVWQLG  173 (229)
Q Consensus       167 i~~wd~~  173 (229)
                      +.++...
T Consensus       196 l~~l~~~  202 (321)
T PF03178_consen  196 LFVLRYN  202 (321)
T ss_dssp             EEEEEE-
T ss_pred             EEEEEEC
Confidence            9999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.05  E-value=0.11  Score=41.36  Aligned_cols=151  Identities=11%  Similarity=0.084  Sum_probs=76.9

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCcceEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN-YNTLERFH   93 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd-~~~~~~~~   93 (229)
                      ...+..+.-++++.+++++.......-||--...-...-......+..+.|.|++++.+.+ ..|.|+.=+ ....+...
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            3467888889999988888766666678765433333333345689999999998876655 888888776 22222222


Q ss_pred             E--ec--cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee--eecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          94 S--FE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV--FEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        94 ~--~~--~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      .  ..  ...-.+..++|.++....++|+. |.+ +...+.++.=.+.  ...-....+.+.|.+. +.-|+ -+.+|.+
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~-~~gf~-lG~~G~l  298 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP-DKGFV-LGQDGVL  298 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET-TEEEE-E-STTEE
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC-CceEE-ECCCcEE
Confidence            1  11  11123788999998777776654 444 3444433221221  1222344677777542 33444 4678877


Q ss_pred             EEE
Q psy4653         168 KVW  170 (229)
Q Consensus       168 ~~w  170 (229)
                      .-|
T Consensus       299 l~~  301 (302)
T PF14870_consen  299 LRY  301 (302)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.03  E-value=0.12  Score=41.52  Aligned_cols=204  Identities=11%  Similarity=0.063  Sum_probs=112.6

Q ss_pred             EEEEEccCCCeEEEEEe--cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CcceEEE-
Q psy4653          19 KCCDLHPTEPWMLASLY--NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN-TLERFHS-   94 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~--dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~-   94 (229)
                      ..+++++++++++.--.  ..+|.+-|+..++.+..+..-  .+..+-=.+ .+-+.+-+.||++.-..+. .++.... 
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEee
Confidence            44678889988888654  458889999988876655421  122222222 2456677789988887776 4554322 


Q ss_pred             ---eccCCC-ceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeeeeec------ce----eeEEEEEEcCCCCCEEE
Q psy4653          95 ---FEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQQVFEG------HT----HYVMQIVINPKDNNTFA  159 (229)
Q Consensus        95 ---~~~h~~-~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~------~~----~~v~~~~~~~~~~~~l~  159 (229)
                         |..-.+ .+..-.+...+..++--+.+|.|+--|+..... ....+.-      ..    +.--.+++++..+.+++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence               111112 122333444444444467788888777754321 1111110      00    11113455554444433


Q ss_pred             EE--ECC-----C--cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee-CCCeEEEEECCCCeEEEeecc
Q psy4653         160 SA--SLD-----R--TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       160 s~--~~d-----~--~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .-  +.+     +  .|-++|+.+++.+..+... ..+.++.... ++.++|.+.+ .++.+.+||..+++.+++++.
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsq-d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQ-DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEES-SSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEcc-CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            21  111     1  5777788888888877642 2466788764 4566776654 589999999999999998863

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.03  E-value=0.0028  Score=35.37  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=29.1

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          58 LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        58 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      ..|.++.|+|..++||.|+.+|.|.++++ ++++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            46999999999999999999999999998 4443

>KOG2079|consensus

Probab=96.96  E-value=0.0046  Score=55.72  Aligned_cols=70  Identities=19%  Similarity=0.293  Sum_probs=56.6

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCe---EEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV---RAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+|.+++|+.+|..+++|-.+|.|.+||...++..+.+..+..++   ..+.+..++..++++...|+  +|..
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4599999999999999999999999999999999998888776554   44444555667889888886  5543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.80  E-value=0.17  Score=39.61  Aligned_cols=195  Identities=12%  Similarity=0.133  Sum_probs=108.7

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-------------E-ecCcCeEEEE--EcCCCCEEEEEeCCCe
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-------------E-VCDLPVRAAK--FVPRKNWIVTGSDDMQ   80 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-------------~-~~~~~v~~~~--~~~~~~~l~sg~~d~~   80 (229)
                      +|..+..-|+-+.|++=+ |+.+.++++..-.....-             . .....+...+  -...+...++.....+
T Consensus        37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            488889888887766654 599999998764333210             0 1112344433  1123333334445558


Q ss_pred             EEEEECCCc-----ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec------------cee
Q psy4653          81 VCVFNYNTL-----ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG------------HTH  143 (229)
Q Consensus        81 i~iwd~~~~-----~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~------------~~~  143 (229)
                      |.+|.....     +.++++.- .+.+.+++|.  +..++.|..+ ...+.|+.+... ..++..            ...
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~  190 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSK  190 (275)
T ss_pred             EEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCC
Confidence            888876542     34555543 3667888888  4566666544 577888874422 222211            112


Q ss_pred             eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCce--EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN--FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      ++..+.++  ++.+|+ +. |..-.+-|.. +++.  ..++-. .....+++.    .+||+.-.. +.|.||++.+++.
T Consensus       191 ~~~~~~~~--~~e~Ll-~~-~~~g~fv~~~-G~~~r~~~i~W~-~~p~~~~~~----~pyli~~~~-~~iEV~~~~~~~l  259 (275)
T PF00780_consen  191 PLGIFQLS--DNEFLL-CY-DNIGVFVNKN-GEPSRKSTIQWS-SAPQSVAYS----SPYLIAFSS-NSIEVRSLETGEL  259 (275)
T ss_pred             ceEEEEeC--CceEEE-Ee-cceEEEEcCC-CCcCcccEEEcC-CchhEEEEE----CCEEEEECC-CEEEEEECcCCcE
Confidence            23333333  344554 33 4344444443 3332  234432 345566663    236776555 5699999999999


Q ss_pred             EEeeccC
Q psy4653         222 VQTLESG  228 (229)
Q Consensus       222 ~~~~~~~  228 (229)
                      +++++..
T Consensus       260 vQ~i~~~  266 (275)
T PF00780_consen  260 VQTIPLP  266 (275)
T ss_pred             EEEEECC
Confidence            9998754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.75  E-value=0.19  Score=39.38  Aligned_cols=145  Identities=9%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEC-CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee--------
Q psy4653          67 PRKNWIVTGSDDMQVCVFNY-NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV--------  137 (229)
Q Consensus        67 ~~~~~l~sg~~d~~i~iwd~-~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~--------  137 (229)
                      ..++.|+.|+.+| +.+++. ...+..+..+  ...|..+...++-..+++-+ |+.+.++++.........        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3578899999999 888888 3333333322  23499999999888776665 599999998654322210        


Q ss_pred             -----eecceeeEEEEE-EcCCCCCEEEEEECCCcEEEEeCCCC-----CceEEEecCCCceEEEEEEeCCCcCEEEEee
Q psy4653         138 -----FEGHTHYVMQIV-INPKDNNTFASASLDRTVKVWQLGSA-----SPNFTLEGHEKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       138 -----~~~~~~~v~~~~-~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                           .......+...+ .....+...+.....++|.+|.....     +...++.- ...+.+++|.    ++.++.|.
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~----~~~i~v~~  155 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL----GNKICVGT  155 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe----CCEEEEEe
Confidence                 001111222222 11223444455566668999987653     23334333 3567788885    22466665


Q ss_pred             CCCeEEEEECCCCeE
Q psy4653         207 DDRLVKIWDYQNKTC  221 (229)
Q Consensus       207 ~d~~i~iwd~~~~~~  221 (229)
                      .+ ...+.|+.++..
T Consensus       156 ~~-~f~~idl~~~~~  169 (275)
T PF00780_consen  156 SK-GFYLIDLNTGSP  169 (275)
T ss_pred             CC-ceEEEecCCCCc
Confidence            54 477888886654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.69  E-value=0.2  Score=38.81  Aligned_cols=166  Identities=10%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             CcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEEEeccC-CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy4653          57 DLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFHSFEAH-SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC  134 (229)
Q Consensus        57 ~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~  134 (229)
                      ...++.+.|+|+.+ ++++....+.|...+.+ ++.++.+.-. -+-...|++..++.++++.-.++.+.++++......
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            34699999999866 66666777788777864 6777665433 244789999988888888877899999988432110


Q ss_pred             ---e--eee-----ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC---CCceEEEe--------cCCCceEEEEE
Q psy4653         135 ---Q--QVF-----EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLE--------GHEKGVNCVDY  193 (229)
Q Consensus       135 ---~--~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~--------~h~~~v~~~~~  193 (229)
                         .  ..+     ..+...+-.++|+|..+ .|+.+-...-.+++.++.   ...+....        .....+.++.+
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence               0  111     12334578899998654 444556666667776653   22222111        12334677887


Q ss_pred             EeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       194 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .+ ..+.+++-...+..|...| .+|+.+..+.
T Consensus       179 ~p-~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  179 DP-RTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             ET-TTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             cC-CCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            54 3455666677788899999 6677766553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.3  Score=40.49  Aligned_cols=160  Identities=17%  Similarity=0.111  Sum_probs=105.9

Q ss_pred             eEEEEEccCCCeEEEEEe---cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEE
Q psy4653          18 VKCCDLHPTEPWMLASLY---NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLERFH   93 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~   93 (229)
                      -..+++.|++..+.++..   ++.+.+.|..+.+.+........+ ..+.+.|+|+.+.... .++.|.+.|.++....+
T Consensus       118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~  196 (381)
T COG3391         118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR  196 (381)
T ss_pred             CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence            456889999977777643   789999999999988886655556 8899999999665554 67889999977655442


Q ss_pred             -E----eccCCCceeEEEEcCCCCEEEEEeCC---CcEEEEecCCceeeeeee-ecceeeEEEEEEcCCCCCEEEEE-EC
Q psy4653          94 -S----FEAHSDYVRCVAVHPTQPFLLTSSDD---MLIKLWNWEKAWACQQVF-EGHTHYVMQIVINPKDNNTFASA-SL  163 (229)
Q Consensus        94 -~----~~~h~~~i~~v~~~~~~~~~~s~~~d---~~v~lwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~-~~  163 (229)
                       .    .... ..=..+.++|++.++......   +.+...|........... .+.. ....+..+| ++..+... +.
T Consensus       197 ~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p-~g~~~yv~~~~  273 (381)
T COG3391         197 GSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP-AGKAAYVANSQ  273 (381)
T ss_pred             cccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC-CCCEEEEEecC
Confidence             1    1111 122478999999966544333   588888876653322211 1111 344567777 45555544 45


Q ss_pred             CCcEEEEeCCCCCceEEE
Q psy4653         164 DRTVKVWQLGSASPNFTL  181 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~  181 (229)
                      .+.+.+-|..+.......
T Consensus       274 ~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         274 GGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             CCeEEEEeCCCCceeeee
Confidence            588888888776555443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.56  E-value=0.24  Score=41.59  Aligned_cols=167  Identities=12%  Similarity=0.072  Sum_probs=86.5

Q ss_pred             EEEEecCcCeEEEEEcCCCCEEEEEe---CC-CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCc--E
Q psy4653          51 KSFEVCDLPVRAAKFVPRKNWIVTGS---DD-MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDML--I  123 (229)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~sg~---~d-~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~--v  123 (229)
                      ..+......+..-.|+|++..++--+   .. ..+.++++++++.-.... ....-....|+|+++.++ +...|+.  |
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            33333344567778888887654332   22 468888998876543332 222334679999999765 6667775  5


Q ss_pred             EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE-ECCCcEEEE--eCCCCCceEEEecCCCceEEEEEEeCCCcC
Q psy4653         124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA-SLDRTVKVW--QLGSASPNFTLEGHEKGVNCVDYYHGGDKP  200 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~w--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  200 (229)
                      .+.|+.... ..+ +....+.-..-.|+| ++..++-. +..|.-.+|  +...... ..+......-..-.+  ++++.
T Consensus       265 y~~dl~~~~-~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~--SpdG~  338 (425)
T COG0823         265 YLMDLDGKN-LPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVW--SPDGD  338 (425)
T ss_pred             EEEcCCCCc-cee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccC--CCCCC
Confidence            555665442 122 222222223556888 56666544 455655555  4443332 222221111112233  34555


Q ss_pred             EEEEee-CCCe--EEEEECCCCeEEEe
Q psy4653         201 YLISGA-DDRL--VKIWDYQNKTCVQT  224 (229)
Q Consensus       201 ~l~s~s-~d~~--i~iwd~~~~~~~~~  224 (229)
                      +|+..+ .+|.  |.+.|..++.-++.
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~  365 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRI  365 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEE
Confidence            555444 3455  66666655442333

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.32  Score=39.00  Aligned_cols=200  Identities=8%  Similarity=0.108  Sum_probs=107.3

Q ss_pred             EEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec----
Q psy4653          22 DLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE----   96 (229)
Q Consensus        22 ~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~----   96 (229)
                      -|.|+.. .+++--..+.|+-||..+++. ..+.... .+.++.....+..|++. ..| +.+++.+++.....+.    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccC
Confidence            3667766 445556788999999987654 3333222 33444343344444443 333 4566665544422211    


Q ss_pred             cC-CCceeEEEEcCCCCEEEEEeC----C-----CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          97 AH-SDYVRCVAVHPTQPFLLTSSD----D-----MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        97 ~h-~~~i~~v~~~~~~~~~~s~~~----d-----~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      +. ..+-+-..+.|+|.+.++...    +     ..=.||.+.-.....+....+-..-+.++|+|+...++++-+..+.
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence            11 234567888999987765543    1     1113444432223445555555556789999943345555566788


Q ss_pred             EEEEeCCC--C----CceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCC-eEEEEECCCCeEEEeeccC
Q psy4653         167 VKVWQLGS--A----SPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDR-LVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       167 i~~wd~~~--~----~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~  228 (229)
                      |.-+++..  +    ...+... ........++.  ..++.+.+++-.+| .|..|+.+ ++.+..+..+
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v--DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV--DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             EEEEecCcccCccCCcceEEEccCCCCCCCceEE--eCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            99888752  1    1111221 11222222333  22444443444444 89999999 8777776543

>PHA02713 hypothetical protein; Provisional

Probab=96.47  E-value=0.051  Score=47.31  Aligned_cols=144  Identities=10%  Similarity=0.059  Sum_probs=70.8

Q ss_pred             CCCeEEEEEecC-----eEEEEEcCCCCeEEE--EEecCcCeEEEEEcCCCCEEEEEeCCC-------------------
Q psy4653          26 TEPWMLASLYNG-----HVHVWNHETNQNVKS--FEVCDLPVRAAKFVPRKNWIVTGSDDM-------------------   79 (229)
Q Consensus        26 ~~~~l~~~~~dg-----~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~d~-------------------   79 (229)
                      ++...+.|+.++     +|..||..+.+-...  +.........+  .-+++..+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence            444556666543     467777776543221  11000011111  22567777776542                   


Q ss_pred             ----eEEEEECCCcceEEEeccCCCcee-EEEEcCCCCEEEEEeCC------CcEEEEecCC--ceeeeeeeecceeeEE
Q psy4653          80 ----QVCVFNYNTLERFHSFEAHSDYVR-CVAVHPTQPFLLTSSDD------MLIKLWNWEK--AWACQQVFEGHTHYVM  146 (229)
Q Consensus        80 ----~i~iwd~~~~~~~~~~~~h~~~i~-~v~~~~~~~~~~s~~~d------~~v~lwd~~~--~~~~~~~~~~~~~~v~  146 (229)
                          .+..||+++.+....-.-...+.. +++ .-++.+.+.|+.+      ..+..||.+.  .|.....+........
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence                466778776543221111111222 222 2335666666654      2467898875  4554333332222222


Q ss_pred             EEEEcCCCCCEEEEEECCC--cEEEEeCCCC
Q psy4653         147 QIVINPKDNNTFASASLDR--TVKVWQLGSA  175 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~  175 (229)
                      .+.+   ++.+++.|+.|+  .+-.||..+.
T Consensus       508 ~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        508 TILH---DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             eEEE---CCEEEEEeeecceeehhhcCcccc
Confidence            3333   578999999888  5556665543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.43  E-value=0.45  Score=39.83  Aligned_cols=195  Identities=8%  Similarity=0.016  Sum_probs=96.3

Q ss_pred             EEEccCCCeEEEEEec-----------CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          21 CDLHPTEPWMLASLYN-----------GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~d-----------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      ++..|.|..+|....+           ..|++|+... +.+..+......+.++.|..+.+ |++-..||.++++|+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence            4556666555555433           1588887664 56666666567899999997655 445679999999998532


Q ss_pred             c------eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEe-cCCceeeeee--eec-----cee-eEEE-EEEcCC
Q psy4653          90 E------RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN-WEKAWACQQV--FEG-----HTH-YVMQ-IVINPK  153 (229)
Q Consensus        90 ~------~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd-~~~~~~~~~~--~~~-----~~~-~v~~-~~~~~~  153 (229)
                      .      .+...+.....+....+..+|-.+++  .++.+.+-+ ..........  ..+     +.. .... ..+.. 
T Consensus       112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-  188 (410)
T PF04841_consen  112 FQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-  188 (410)
T ss_pred             eeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-
Confidence            2      11111111222222333344533333  344444332 2111010100  000     000 0001 11222 


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +....+....++.+.+-+-.....   +.. .+++..++.+  +++++||--..+|.+.+.+..-.+++..++
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~-~~~i~~iavS--png~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENSFKQ---IDS-DGPIIKIAVS--PNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             CcceEEEEecCCEEEEEEcccccc---ccC-CCCeEEEEEC--CCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            233444444455555333221111   211 2457777774  456678877888888888766555554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.39  E-value=0.38  Score=38.55  Aligned_cols=154  Identities=9%  Similarity=0.027  Sum_probs=86.1

Q ss_pred             EEEEEcCCCCeEEEEEe-cC----cCeEEEEEcCCCCEEEEEeC---------CCeEEEEECC-CcceEEEeccCCCcee
Q psy4653          39 VHVWNHETNQNVKSFEV-CD----LPVRAAKFVPRKNWIVTGSD---------DMQVCVFNYN-TLERFHSFEAHSDYVR  103 (229)
Q Consensus        39 v~~wd~~~~~~~~~~~~-~~----~~v~~~~~~~~~~~l~sg~~---------d~~i~iwd~~-~~~~~~~~~~h~~~i~  103 (229)
                      +.+++.+++..+..+.. ..    ..-+.+...|+|.+-++--.         ...-.+|.+. .+..++.+..+-..-+
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N  166 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN  166 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC
Confidence            44566655544332221 11    23456667778775544333         0112455555 3444444444444457


Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEecCC--cee---e-eeeeecceeeEEEEEEcCCCCCEEEEEECCC-cEEEEeCCCC
Q psy4653         104 CVAVHPTQPFLLTS-SDDMLIKLWNWEK--AWA---C-QQVFEGHTHYVMQIVINPKDNNTFASASLDR-TVKVWQLGSA  175 (229)
Q Consensus       104 ~v~~~~~~~~~~s~-~~d~~v~lwd~~~--~~~---~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~  175 (229)
                      .|+|||+++.+..+ +..+.|.-|++..  ...   . ...+....+..-.++... ++.+.+++.+++ .|..|+.. +
T Consensus       167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-C
Confidence            89999999877655 4457888888752  100   0 111111222333344443 566665555554 89999998 8


Q ss_pred             CceEEEecCCCceEEEEEE
Q psy4653         176 SPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       176 ~~~~~~~~h~~~v~~~~~~  194 (229)
                      +.+..+.-....+.+++|-
T Consensus       245 ~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         245 KLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             cEEEEEECCCCCCccceEe
Confidence            8787777665667777873

>PHA03098 kelch-like protein; Provisional

Probab=96.29  E-value=0.5  Score=40.97  Aligned_cols=185  Identities=10%  Similarity=0.060  Sum_probs=81.1

Q ss_pred             CCCeEEEEEecC------eEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCcceEE
Q psy4653          26 TEPWMLASLYNG------HVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNTLERFH   93 (229)
Q Consensus        26 ~~~~l~~~~~dg------~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~   93 (229)
                      ++..++.|+.++      .+..||..+.+....-... .....++. .-+++..+.|+.++     .+..||+.+.+...
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            444556665432      4667777765542211000 00111222 22566777777652     46677876654322


Q ss_pred             EeccCCCce-eEEEEcCCCCEEEEEeCC------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          94 SFEAHSDYV-RCVAVHPTQPFLLTSSDD------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        94 ~~~~h~~~i-~~v~~~~~~~~~~s~~~d------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      .-.-...+- .+++ .-++.+++.||.+      ..+..||..+. |.....+...... .+....  ++.+++.|+.+.
T Consensus       373 ~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~  448 (534)
T PHA03098        373 EPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGISY  448 (534)
T ss_pred             CCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCccC
Confidence            111111111 1222 2345666666632      35778887543 2211111110001 111221  355666666432


Q ss_pred             --------cEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCC
Q psy4653         166 --------TVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNK  219 (229)
Q Consensus       166 --------~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~  219 (229)
                              .+..||..+.+  .+..+.........+.+    ++.+++.|+.+     ..|..||..+.
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF----NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE----CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                    27777876542  11111111111112222    23455555543     47888988765

>KOG1916|consensus

Probab=96.24  E-value=0.0019  Score=57.13  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=98.1

Q ss_pred             hhhcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcC--CCCeEEEEEec-----CcCeEEEE---EcCCCCEEEEEe
Q psy4653           8 KRKLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHE--TNQNVKSFEVC-----DLPVRAAK---FVPRKNWIVTGS   76 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~~~-----~~~v~~~~---~~~~~~~l~sg~   76 (229)
                      +--++|.+..|-.+.|-. +.+.++  -.-|...+||+.  .|+....+..+     ...+.-+.   |.++.-++..+.
T Consensus       125 ~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  125 NELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             HHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence            344667778888888843 444444  233677788875  34443333221     12233444   445677888898


Q ss_pred             CCCeEEEEECCCcceEEEeccCCCcee-----------EEEEcCCCCEEEEEeCCCcEEEEecCCce----eeeeeeecc
Q psy4653          77 DDMQVCVFNYNTLERFHSFEAHSDYVR-----------CVAVHPTQPFLLTSSDDMLIKLWNWEKAW----ACQQVFEGH  141 (229)
Q Consensus        77 ~d~~i~iwd~~~~~~~~~~~~h~~~i~-----------~v~~~~~~~~~~s~~~d~~v~lwd~~~~~----~~~~~~~~~  141 (229)
                      .++.|++..+++... ..+.+|...+.           --.++|||..|++++.||.++.|.+.-..    .+....+.|
T Consensus       203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            999988887765332 22334543322           23479999999999999999988864321    234445556


Q ss_pred             e-eeEEEEEEcCC--------CCCEEEEE-ECCCcEEEEeCCCCCce
Q psy4653         142 T-HYVMQIVINPK--------DNNTFASA-SLDRTVKVWQLGSASPN  178 (229)
Q Consensus       142 ~-~~v~~~~~~~~--------~~~~l~s~-~~d~~i~~wd~~~~~~~  178 (229)
                      . ++..+..++..        ...+.+++ ..+..+++|.....+++
T Consensus       282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            5 33333333211        01234444 46678999987665554

>KOG4441|consensus

Probab=96.18  E-value=0.38  Score=42.06  Aligned_cols=187  Identities=11%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             CCCeEEEEEec------CeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCC-C-----eEEEEECCCcceE
Q psy4653          26 TEPWMLASLYN------GHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDD-M-----QVCVFNYNTLERF   92 (229)
Q Consensus        26 ~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d-~-----~i~iwd~~~~~~~   92 (229)
                      .+..++.|+.+      ..+..+|..++.....-... .....++... ++...++|+.| |     ++..||..+.+..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            35566677766      46778888887443322111 1123334444 56778888888 3     4667777766543


Q ss_pred             EEeccCCCceeEEEEcCCCCEEEEEeCCCc-----EEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC-
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDML-----IKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLDR-  165 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~-----v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-  165 (229)
                      ....-...+...=.-.-++.+.+.||.||.     +-.||.... |.....+.........+.   .++.+.+.||.|+ 
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~---~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV---LGGKLYIIGGGDGS  439 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE---ECCEEEEEcCcCCC
Confidence            311111111111111235678889988864     556775443 221111111111122222   2577888888665 


Q ss_pred             -----cEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC-----eEEEEECCCCe
Q psy4653         166 -----TVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR-----LVKIWDYQNKT  220 (229)
Q Consensus       166 -----~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~  220 (229)
                           ++..||..+.+  ..-.+........ ++..   ++.+.+.|+.|+     +|..||.++.+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccce-EEEE---CCEEEEECCccCCCccceEEEEcCCCCc
Confidence                 34566665432  1111111111111 2221   334666677665     37778876643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.10  E-value=0.83  Score=39.62  Aligned_cols=73  Identities=5%  Similarity=0.018  Sum_probs=50.9

Q ss_pred             EEEEccCCCeEEEEEe-----cC-----------eEEEEEcCCCCeEEEEEecCc---------CeEEEEEcCCCC---E
Q psy4653          20 CCDLHPTEPWMLASLY-----NG-----------HVHVWNHETNQNVKSFEVCDL---------PVRAAKFVPRKN---W   71 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~-----dg-----------~v~~wd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~   71 (229)
                      ...+.|+...+..+..     ++           +|.--|++||+....|+....         +-.-+....+|+   .
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~  317 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL  317 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence            3467777777776652     22           788899999999988875211         122233334665   7


Q ss_pred             EEEEeCCCeEEEEECCCcceE
Q psy4653          72 IVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        72 l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ++.+..+|.+.+.|-.+++.+
T Consensus       318 v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       318 LAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEeCCCceEEEEECCCCcee
Confidence            889999999999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.90  E-value=0.75  Score=37.40  Aligned_cols=150  Identities=11%  Similarity=0.054  Sum_probs=79.0

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEE-EEcCCCCe-EEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHV-WNHETNQN-VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~-wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      ..+.++.+.|++.+++++ ..|.+.. +|- .++. ..........+..+.+.++++.+++| ..|.+.+=..+.++.-.
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            457888999988655444 4554442 221 1221 11112233568899999999887776 45765432233333322


Q ss_pred             EeccC----CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          94 SFEAH----SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        94 ~~~~h----~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ....+    ...+..+.+.+++..++ ++.+|.+.. ....+..-....  ..-....+.+.+.. ++..++ .+..|.|
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~~-~G~~G~i  325 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKGFV-LGQRGVL  325 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeC-CCceEE-ECCCceE
Confidence            22211    23477899999777554 445676643 333321111110  11122456666553 334444 5668888


Q ss_pred             EEEeC
Q psy4653         168 KVWQL  172 (229)
Q Consensus       168 ~~wd~  172 (229)
                      .-++-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            87754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.83  E-value=0.058  Score=29.27  Aligned_cols=30  Identities=23%  Similarity=0.569  Sum_probs=24.7

Q ss_pred             ceEEEEEccCCC---eEEEEEecCeEEEEEcCC
Q psy4653          17 RVKCCDLHPTEP---WMLASLYNGHVHVWNHET   46 (229)
Q Consensus        17 ~v~~~~~~p~~~---~l~~~~~dg~v~~wd~~~   46 (229)
                      .|.++.|+|+..   +|+.+-.-|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999998654   666677789999999996

It contains a characteristic DLL sequence motif.

>KOG4441|consensus

Probab=95.76  E-value=0.94  Score=39.70  Aligned_cols=190  Identities=12%  Similarity=0.079  Sum_probs=91.3

Q ss_pred             EEEEccCCCeEEEEEec------CeEEEEEcCCCCeEEEEEecCcC-eEEEEEcCCCCEEEEEeCCC-----eEEEEECC
Q psy4653          20 CCDLHPTEPWMLASLYN------GHVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDM-----QVCVFNYN   87 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~   87 (229)
                      ++++. .+...++|+.|      .++..||..+.+-...-.-.... -..+. .-+|..-|+|+.||     ++-.||+.
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCC
Confidence            33444 44567778877      45777888877643311111100 11111 12677888998887     46677776


Q ss_pred             CcceEEEeccCCCceeEEE-EcCCCCEEEEEeCCC------cEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          88 TLERFHSFEAHSDYVRCVA-VHPTQPFLLTSSDDM------LIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~-~~~~~~~~~s~~~d~------~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      +.+.-.. ........+.+ ..-++.+.+.||.++      ++..||...+ |.....+........ ++.  -++.+++
T Consensus       405 ~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~--~~~~iYv  480 (571)
T KOG4441|consen  405 TNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV--LNGKIYV  480 (571)
T ss_pred             CCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE--ECCEEEE
Confidence            6543211 11111222222 234567777887554      4567775433 221111111111111 222  1467888


Q ss_pred             EEECCCc-----EEEEeCCCCCceE--EEecCCCceEEEEEEeCCCcCEEEEeeCCCe-----EEEEECCCC
Q psy4653         160 SASLDRT-----VKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLISGADDRL-----VKIWDYQNK  219 (229)
Q Consensus       160 s~~~d~~-----i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~-----i~iwd~~~~  219 (229)
                      .||.|+.     +-.+|..+.+-..  .+......+.....    ++.+.+.|+.||.     |..||..+.
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE----CCEEEEEecccCccccceeEEcCCCCC
Confidence            8887763     5667765543211  11112222222222    3345666777654     666766544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.75  E-value=0.89  Score=37.20  Aligned_cols=62  Identities=8%  Similarity=0.023  Sum_probs=42.2

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-e---------------c-CcCeEEEEEcCCCCEEEEEeC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-V---------------C-DLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~---------------~-~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      ...+....|+|+|+.++... ++.|.+++..+++..+... +               + -..-..+.|+|++++||....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            45789999999998777765 7899999988775433221 1               0 112467889999998877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4499|consensus

Probab=95.75  E-value=0.37  Score=36.69  Aligned_cols=92  Identities=9%  Similarity=-0.025  Sum_probs=64.8

Q ss_pred             EEEEEccCCCeEEEE-EecCeEEEEE--cCCCCe-----EEEEEe----cCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          19 KCCDLHPTEPWMLAS-LYNGHVHVWN--HETNQN-----VKSFEV----CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~-~~dg~v~~wd--~~~~~~-----~~~~~~----~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      +.++|+-+.+.+..- +.+=.|.-||  ..+|..     +..++.    ....--.+++..+|++.++.-+.++|.-.|+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            567787776655544 4566777788  556543     222221    1112234555778898888888899999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCC
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPT  110 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~  110 (229)
                      .+++.+.+++-....|+|++|-..
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCC
Confidence            999999999989999999999643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.70  E-value=0.59  Score=41.94  Aligned_cols=79  Identities=15%  Similarity=0.105  Sum_probs=54.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECC---------Ccc---eEEEe--------ccCCCceeEEEEcCC---CCEEE
Q psy4653          59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYN---------TLE---RFHSF--------EAHSDYVRCVAVHPT---QPFLL  115 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~---------~~~---~~~~~--------~~h~~~i~~v~~~~~---~~~~~  115 (229)
                      .|..+.++|+|.+|+..+..|...+-=.+         .++   .++.+        ..+...|..+.|||.   +..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            58899999999999988887743332111         111   12222        123457889999997   47888


Q ss_pred             EEeCCCcEEEEecCCceeeeee
Q psy4653         116 TSSDDMLIKLWNWEKAWACQQV  137 (229)
Q Consensus       116 s~~~d~~v~lwd~~~~~~~~~~  137 (229)
                      .-..|+.+|+||+.+...+..+
T Consensus       166 vLtsdn~lR~y~~~~~~~p~~v  187 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDPQHPWQV  187 (717)
T ss_pred             EEecCCEEEEEecCCCCCCeEE
Confidence            9999999999999765444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.68  E-value=1.4  Score=38.83  Aligned_cols=169  Identities=9%  Similarity=-0.030  Sum_probs=84.9

Q ss_pred             cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe------CCC--eEEEEECCCcceEEEeccCCCceeEEEE
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS------DDM--QVCVFNYNTLERFHSFEAHSDYVRCVAV  107 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~------~d~--~i~iwd~~~~~~~~~~~~h~~~i~~v~~  107 (229)
                      +|.+.-.+-..-..+.-.......+....++|+|+.++...      .|+  +|.+.+... .. ..+.. ......-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceE
Confidence            67765543322222221112223578889999999876655      244  455545422 22 22221 123778899


Q ss_pred             cCCCCEEEEEeCC------------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE---EeC
Q psy4653         108 HPTQPFLLTSSDD------------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV---WQL  172 (229)
Q Consensus       108 ~~~~~~~~s~~~d------------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~---wd~  172 (229)
                      +|++..+++....            +.+.+.+++..+...    ...+.|..+.|+| |+..++.-. ++.+.+   -..
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~  478 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQT  478 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeC
Confidence            9998876655432            223222333221111    1234689999998 677776544 466666   222


Q ss_pred             CCCC-ce---EEEecC-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         173 GSAS-PN---FTLEGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       173 ~~~~-~~---~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      ..+. .+   ..+..- ...+..++|..  +.. |+.+..++...+|-+
T Consensus       479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~--~~~-L~V~~~~~~~~v~~v  524 (591)
T PRK13616        479 EDGQYALTNPREVGPGLGDTAVSLDWRT--GDS-LVVGRSDPEHPVWYV  524 (591)
T ss_pred             CCCceeecccEEeecccCCccccceEec--CCE-EEEEecCCCCceEEE
Confidence            2332 11   112221 22246677753  333 445454444445543

>KOG4499|consensus

Probab=95.60  E-value=0.73  Score=35.17  Aligned_cols=192  Identities=11%  Similarity=0.131  Sum_probs=100.5

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC--CEEEEE-eCCCeEEEEEC--CCcceEEE---ecc--
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK--NWIVTG-SDDMQVCVFNY--NTLERFHS---FEA--   97 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg-~~d~~i~iwd~--~~~~~~~~---~~~--   97 (229)
                      ..+.+--..|.|+-||.++.+..+.- .+..++.++.+--.+  +..+++ +..-.|.=||.  +..+.+++   ++.  
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~  106 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR  106 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence            34555567788888999886654432 222223333332222  233333 22334555663  22223332   111  


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeeeeeecce--------eeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQVFEGHT--------HYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~~~~~~~~--------~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      -..+.+.-..+|+|+++...-.|-.-   +++.-. .+..-+.+|.        +.-..++|+...-.....-+.+-+|.
T Consensus       107 kknR~NDgkvdP~Gryy~GtMad~~~---~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRYYGGTMADFGD---DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             HhcccccCccCCCCceeeeeeccccc---cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            13355666789999986644333221   121111 1111122221        12245667754444556778888998


Q ss_pred             EEe--CCCC-----CceEEEec-----CC-CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         169 VWQ--LGSA-----SPNFTLEG-----HE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       169 ~wd--~~~~-----~~~~~~~~-----h~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .||  +.++     +.++.++.     +. ..-.+++    .++++.++....++|.-.|..+|+.++++..
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID----~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl  251 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID----TEGNLYVATFNGGTVQKVDPTTGKILLEIKL  251 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc----cCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence            898  4443     23333332     11 1123332    3566778888889999999999999988753

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.50  E-value=1  Score=36.05  Aligned_cols=151  Identities=7%  Similarity=0.027  Sum_probs=73.2

Q ss_pred             CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-eeee
Q psy4653          57 DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQ  135 (229)
Q Consensus        57 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-~~~~  135 (229)
                      ...+..+.-+++|+++++++...-..-||.....-...-.....+|..|.|.|++.+.+.+ ..+.|+.=+.... ..-.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            3568888889999999988766666788765322211112245789999999997765544 7888887762211 1111


Q ss_pred             ee-ee-ccee-eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec---CCCceEEEEEEeCCCcCEEEEeeCCC
Q psy4653         136 QV-FE-GHTH-YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---HEKGVNCVDYYHGGDKPYLISGADDR  209 (229)
Q Consensus       136 ~~-~~-~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~d~  209 (229)
                      .. .. ...+ .+..+++.+ ++...++|+ .+.+. .....++.-...+.   -...+..+.|... +.  -+.-+.+|
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~-~~--gf~lG~~G  296 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNP-DK--GFVLGQDG  296 (302)
T ss_dssp             --B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEET-TE--EEEE-STT
T ss_pred             cccCCcccCceeeEEEEecC-CCCEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCC-Cc--eEEECCCc
Confidence            10 11 1122 378889986 455666544 55443 33444443332221   2334677888644 32  34447778


Q ss_pred             eEEEE
Q psy4653         210 LVKIW  214 (229)
Q Consensus       210 ~i~iw  214 (229)
                      .+.=|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76544

>KOG1897|consensus

Probab=95.42  E-value=2.1  Score=39.23  Aligned_cols=152  Identities=11%  Similarity=0.107  Sum_probs=99.6

Q ss_pred             ceEEEEEccC-CCeEEEEEe----------cCeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653          17 RVKCCDLHPT-EPWMLASLY----------NGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus        17 ~v~~~~~~p~-~~~l~~~~~----------dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      .+.++.|..| +.++++|+.          .|.+.++.....+.+......  +..+.++..- +|++||.  -..+|++
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrL  852 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRL  852 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEE
Confidence            3556668877 677777752          377888888774443433222  2334444333 4666654  4778999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC--CceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      ++..+.+.++.-..+...+..+...-.+..++.|..-+++.+..-+  ++.........+..+.+++.+-  +++.++-+
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil--~~d~ylga  930 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL--DDDTYLGA  930 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe--cCceEEee
Confidence            9998887777666778889999999999999999887877655433  3223333334456667777764  34566666


Q ss_pred             ECCCcEEEEeCC
Q psy4653         162 SLDRTVKVWQLG  173 (229)
Q Consensus       162 ~~d~~i~~wd~~  173 (229)
                      -.++.+.+....
T Consensus       931 e~~gNlf~v~~d  942 (1096)
T KOG1897|consen  931 ENSGNLFTVRKD  942 (1096)
T ss_pred             cccccEEEEEec
Confidence            777777776544

>PHA02790 Kelch-like protein; Provisional

Probab=95.36  E-value=1.6  Score=37.47  Aligned_cols=184  Identities=8%  Similarity=-0.046  Sum_probs=82.0

Q ss_pred             CCCeEEEEEec-----CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEecc
Q psy4653          26 TEPWMLASLYN-----GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        26 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~   97 (229)
                      ++..+++|+.+     ..+..||..+++....-.... ..-.++. .-++...+.|+.++  .+..||..+.+....-.-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            34455667654     256678877754322211111 1111222 23566667777543  567788765443221111


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCC---cEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDM---LIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~---~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  173 (229)
                      ...........-++.+.+.||.++   .+..||.+.. |.....+.........+.+   ++.+++.|+   .+-+||..
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~  423 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCES  423 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCC
Confidence            111111112223566677776553   4667876542 2211111101111111222   456777664   46678875


Q ss_pred             CCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         174 SAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       174 ~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                      +.+  .+..+.........+.+    ++.+.+.|+.+     ..|..||..+.+
T Consensus       424 ~~~W~~~~~m~~~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        424 SNTWTLIDDPIYPRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCcEeEcCCCCCCccccEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            432  11111111112222222    33456666643     457888887654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.30  E-value=0.76  Score=39.65  Aligned_cols=112  Identities=17%  Similarity=0.267  Sum_probs=72.2

Q ss_pred             CceEEEEEccC----CCeEEEEEecCeEEEEEcC-----CCCeEEEEEec---CcC--eEEEEEcCCCCEEEEEeCCCeE
Q psy4653          16 DRVKCCDLHPT----EPWMLASLYNGHVHVWNHE-----TNQNVKSFEVC---DLP--VRAAKFVPRKNWIVTGSDDMQV   81 (229)
Q Consensus        16 ~~v~~~~~~p~----~~~l~~~~~dg~v~~wd~~-----~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~sg~~d~~i   81 (229)
                      .-|..++|.|-    .+.|+|....++|.+|-+.     +++.+..-..+   ..+  -..+.|+|+...|++=..+..-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            46899999986    5689999999999999975     23332221111   112  2456789888777665544433


Q ss_pred             EEEECCC-cceE-EEeccCCCceeEEEEcCCCCEEEEE-eCCCcEEEEec
Q psy4653          82 CVFNYNT-LERF-HSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNW  128 (229)
Q Consensus        82 ~iwd~~~-~~~~-~~~~~h~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~  128 (229)
                      .+.++.. ..++ ..++ ..+.|.|-+|.+||+.++.+ +..=.-++||-
T Consensus       137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            4445532 2222 2233 45789999999999977654 44556779984

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.11  E-value=0.38  Score=40.12  Aligned_cols=92  Identities=11%  Similarity=0.040  Sum_probs=61.3

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEE-E-EEcCCC-------------
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA-A-KFVPRK-------------   69 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~-~-~~~~~~-------------   69 (229)
                      +..+..+......+.++..+|.+++.+++-.-|.|.++|+.++..++.+++.-++-.. + ......             
T Consensus       297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~  376 (415)
T PF14655_consen  297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS  376 (415)
T ss_pred             cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCC
Confidence            4455567777788999999999887777666799999999999887777654321100 0 000000             


Q ss_pred             --C--EEEEEeCCCeEEEEECCCcceEEEec
Q psy4653          70 --N--WIVTGSDDMQVCVFNYNTLERFHSFE   96 (229)
Q Consensus        70 --~--~l~sg~~d~~i~iwd~~~~~~~~~~~   96 (229)
                        .  +++-+-..|.|-||.++++.++..+.
T Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             cceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence              1  23344567888899988877766554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.01  E-value=1.8  Score=36.15  Aligned_cols=199  Identities=12%  Similarity=0.074  Sum_probs=104.3

Q ss_pred             EEEEccCCCeEEEEEecC-----------eEEEEEcCCCCeE--EEEEecCcC--eEEEEEcCCCCEEEEEeCC----Ce
Q psy4653          20 CCDLHPTEPWMLASLYNG-----------HVHVWNHETNQNV--KSFEVCDLP--VRAAKFVPRKNWIVTGSDD----MQ   80 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~dg-----------~v~~wd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~sg~~d----~~   80 (229)
                      .+.|.+++..++....+.           .|..|.+.++...  ..|+..+..  ...+..++++++|+.....    ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            389999999888887443           3788888876543  455444433  5688889999987654332    34


Q ss_pred             EEEEECCCc----ceEEEeccCCCceeEEEEcCCCCEEEEE---eCCCcEEEEecCCcee--eeeeeeccee--eEEEEE
Q psy4653          81 VCVFNYNTL----ERFHSFEAHSDYVRCVAVHPTQPFLLTS---SDDMLIKLWNWEKAWA--CQQVFEGHTH--YVMQIV  149 (229)
Q Consensus        81 i~iwd~~~~----~~~~~~~~h~~~i~~v~~~~~~~~~~s~---~~d~~v~lwd~~~~~~--~~~~~~~~~~--~v~~~~  149 (229)
                      +.+.+....    .....+......+....-+..+.+++..   ...+.|.-.++.....  ...++..+..  .+..+.
T Consensus       254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred             EEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence            677787664    2334444344444433333344444433   2235677777765532  1223333433  344444


Q ss_pred             EcCCCCCEEEEEECCC--cEEEEeCCCCCceEEEecCC-CceEEEEEEeCCCcCEEEEeeC---CCeEEEEECCCCeE
Q psy4653         150 INPKDNNTFASASLDR--TVKVWQLGSASPNFTLEGHE-KGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTC  221 (229)
Q Consensus       150 ~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~  221 (229)
                      ..  .+.+++.--.++  .|+++++..+.....+..-. ..+..+...+..+ .+.++-+.   -.++.-||+.+++.
T Consensus       334 ~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~-~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  334 LF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSD-ELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-S-EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCC-EEEEEEeCCCCCCEEEEEECCCCCE
Confidence            42  344555555554  67788887344444444322 2344444322222 23333332   46788889988865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2377|consensus

Probab=95.00  E-value=1.7  Score=36.51  Aligned_cols=153  Identities=9%  Similarity=0.057  Sum_probs=86.6

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEE-EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE-
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSF-EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF-   92 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-   92 (229)
                      +-+.+-|...++.+++... |.+.=|-+...  +..-.+ ....+++.++.|+++.+.||+--.+..|.+++....+.. 
T Consensus        24 esngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   24 ESNGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cccceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            3455667666666666654 44444665543  222223 234568999999999999999999999999987433221 


Q ss_pred             ---EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE-CCCcEE
Q psy4653          93 ---HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS-LDRTVK  168 (229)
Q Consensus        93 ---~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~  168 (229)
                         +.-+.-+..|....|+......+....  -+-+|.......-.+..+.|.-.|.=..|.+...-.+++.+ ..++..
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~--G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln  180 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFITDQ--GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN  180 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEecC--CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence               222333456889999887554444322  34444443322223444455555555555554443344333 344444


Q ss_pred             EEeC
Q psy4653         169 VWQL  172 (229)
Q Consensus       169 ~wd~  172 (229)
                      -+.+
T Consensus       181 pf~~  184 (657)
T KOG2377|consen  181 PFHF  184 (657)
T ss_pred             cEEE
Confidence            3433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.81  E-value=1.8  Score=35.09  Aligned_cols=174  Identities=12%  Similarity=0.079  Sum_probs=101.6

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC------CC----eEEEEECCCcceEEEeccCCC------
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD------DM----QVCVFNYNTLERFHSFEAHSD------  100 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------d~----~i~iwd~~~~~~~~~~~~h~~------  100 (229)
                      +.+.+.|..+++.+..+...-  ...+..+|+++.+.+++.      .|    .|.+||.++-.....+.-..+      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            489999999999888776543  334667899998877652      22    588999999877665433322      


Q ss_pred             -ceeEEEEcCCCCEEEE--EeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC-CCC
Q psy4653         101 -YVRCVAVHPTQPFLLT--SSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG-SAS  176 (229)
Q Consensus       101 -~i~~v~~~~~~~~~~s--~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~  176 (229)
                       ....+.++.++++++.  .+-.-+|.|-|+...+-. ..+.-  ..+..+.  |..+.-|.+-|.||++.-..+. .++
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv-~ei~~--PGC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVV-GEIDT--PGCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE-EEEEG--TSEEEEE--EEETTEEEEEETTSCEEEEEETSTSS
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCcee-eeecC--CCEEEEE--ecCCCceEEEecCCceEEEEECCCCC
Confidence             2234677888886543  355567888888765332 22221  1122222  3334578899999999999987 444


Q ss_pred             ceEEEe----cCCCceE-EEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         177 PNFTLE----GHEKGVN-CVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       177 ~~~~~~----~h~~~v~-~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +.....    .-.+++. .-++. ...+.+++ -+.+|.|+--|+...
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~-~~~~~~~F-~Sy~G~v~~~dlsg~  215 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYS-RDGGRLYF-VSYEGNVYSADLSGD  215 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEE-TTTTEEEE-EBTTSEEEEEEETTS
T ss_pred             EeEeeccccCCCCcccccccceE-CCCCeEEE-EecCCEEEEEeccCC
Confidence            432221    1112222 11221 22223333 577888888777654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.69  E-value=1.6  Score=34.04  Aligned_cols=193  Identities=8%  Similarity=0.049  Sum_probs=109.1

Q ss_pred             hhhhhcccCCCc--eEEEEEccCCCeEEEEEecC--eEEEEEcCCCCeEEEEEecCcC-eEEEEEcCCCCEEEEEeCCCe
Q psy4653           6 DIKRKLTARSDR--VKCCDLHPTEPWMLASLYNG--HVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDMQ   80 (229)
Q Consensus         6 ~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~dg--~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~~   80 (229)
                      ++.+.|. |...  ...+.|.+++..+-+++.-|  .|+.+|+.+++........... --.+... ++++..---.++.
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence            3444444 3333  36788877887777777555  7999999999987766544321 2223333 3444445567889


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee-cce---eeEEEEEEcCCCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-GHT---HYVMQIVINPKDNN  156 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~  156 (229)
                      ..+||.++.+.+..+.-. ..=..++  .++..++.+.....+..+|.++......+.. ...   ..+..+.+-  ++.
T Consensus       112 ~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~  186 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGK  186 (264)
T ss_dssp             EEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTE
T ss_pred             EEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCE
Confidence            999999998888776432 2223444  5566777776677888888765433222211 111   223445553  455


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEe------------cC---CCceEEEEEEeCCCcCEEEEee
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLE------------GH---EKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~------------~h---~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                      +.|-.-....|..-|..++.....+.            .+   ..-.+.|+|.+. .+.+++||=
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~-~~~l~vTGK  250 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE-TDRLFVTGK  250 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT-TTEEEEEET
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC-CCEEEEEeC
Confidence            55555566677777877776554432            01   223688998654 345777763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1900|consensus

Probab=94.24  E-value=2.3  Score=40.15  Aligned_cols=158  Identities=15%  Similarity=0.308  Sum_probs=92.7

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEc--------CCCCEEEEEeCCCeEEEEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV--------PRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~sg~~d~~i~iwd   85 (229)
                      |...=..+.+-|.=..+..+ .|+.+.+|+.+++.....+...+..|..+...        |.=++|+.-..--.|.++-
T Consensus        77 ~~~~~~~mGiFpeI~RaWiT-iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWIT-IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             CcceeeeeccchhhcceEEE-eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            33333445555654333333 58999999999987777776666555555432        2223444444455566664


Q ss_pred             CCCcc---eEEEec------cCCCceeEEEEcCCCCEEEEEeCCCcEE--EEecCCcee---ee----------------
Q psy4653          86 YNTLE---RFHSFE------AHSDYVRCVAVHPTQPFLLTSSDDMLIK--LWNWEKAWA---CQ----------------  135 (229)
Q Consensus        86 ~~~~~---~~~~~~------~h~~~i~~v~~~~~~~~~~s~~~d~~v~--lwd~~~~~~---~~----------------  135 (229)
                      +.-.+   ....+.      ...-.|+|+....+|+.|++|-.+ .|+  +|...++|-   +.                
T Consensus       156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence            32111   111121      123467899988899988877655 332  222333321   11                


Q ss_pred             -eeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         136 -QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       136 -~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                       .++-.+..+|.++.+.. ...++.+=+..++|.+||+..
T Consensus       235 ~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence             11114566888998875 567888889999999999975

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.21  E-value=2.4  Score=37.47  Aligned_cols=101  Identities=9%  Similarity=0.127  Sum_probs=67.9

Q ss_pred             cCCCeEEEEEecCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEc--CCCCEEEEEeCCCeEEEEECCC---------cceE
Q psy4653          25 PTEPWMLASLYNGHVHVWNHETNQNVKSFE-VCDLPVRAAKFV--PRKNWIVTGSDDMQVCVFNYNT---------LERF   92 (229)
Q Consensus        25 p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~sg~~d~~i~iwd~~~---------~~~~   92 (229)
                      .-++..++......+.|||.+.+.....-. ...+.|..++|.  |+++.+++.+-...|.++--..         ...+
T Consensus        39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            344444444455689999999887543322 235689999996  5778888888889899885321         1123


Q ss_pred             EE--eccCC-CceeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4653          93 HS--FEAHS-DYVRCVAVHPTQPFLLTSSDDMLIKLWN  127 (229)
Q Consensus        93 ~~--~~~h~-~~i~~v~~~~~~~~~~s~~~d~~v~lwd  127 (229)
                      +.  +..|+ .+|....|.++|..++.++  +++.|+|
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence            32  23344 5788999999998887764  4788887

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.09  E-value=0.34  Score=26.28  Aligned_cols=32  Identities=16%  Similarity=0.249  Sum_probs=25.3

Q ss_pred             CceeEEEEcCCCC---EEEEEeCCCcEEEEecCCc
Q psy4653         100 DYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKA  131 (229)
Q Consensus       100 ~~i~~v~~~~~~~---~~~s~~~d~~v~lwd~~~~  131 (229)
                      +.|+++.|+|+.-   +|+.+-.-+.|-|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999997544   7777777789999999854

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.01  E-value=3.4  Score=35.91  Aligned_cols=115  Identities=10%  Similarity=0.064  Sum_probs=66.8

Q ss_pred             cCeEEEEEcCCCC----EEEEEeCCCeEEEEECC-----CcceEEEeccCC-Cc--e--eEEEEcCCCCEEEEEeCCCcE
Q psy4653          58 LPVRAAKFVPRKN----WIVTGSDDMQVCVFNYN-----TLERFHSFEAHS-DY--V--RCVAVHPTQPFLLTSSDDMLI  123 (229)
Q Consensus        58 ~~v~~~~~~~~~~----~l~sg~~d~~i~iwd~~-----~~~~~~~~~~h~-~~--i--~~v~~~~~~~~~~s~~~d~~v  123 (229)
                      +.|..+.|.|.+.    -|++.....+|.+|-+.     .++.+....++- +.  |  ....|||....++.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            3699999999632    34455577889999864     233333222111 11  1  357899999987655444333


Q ss_pred             EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE-EEECCCcEEEEeCC
Q psy4653         124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA-SASLDRTVKVWQLG  173 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~  173 (229)
                      .+.++.......+.--...+-|.+.+|.. ||..|+ +.+..-.-++||-.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence            45555432222222223456789999987 555544 44555567788753

>KOG2377|consensus

Probab=93.91  E-value=3.4  Score=34.79  Aligned_cols=157  Identities=8%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCC---cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-ee
Q psy4653          60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNT---LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQ  135 (229)
Q Consensus        60 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~  135 (229)
                      .+.+-|.-..+.|.+.. .|.+.=|.+..   .-++..-....+.|.++.|++|.+.+++--.|.+|.+++...... ..
T Consensus        25 sngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   25 SNGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             ccceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            34455554444444443 33345554432   112211123456899999999999999999999999998732211 11


Q ss_pred             e--eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653         136 Q--VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK  212 (229)
Q Consensus       136 ~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~  212 (229)
                      .  ..+.....|....|..  ..-+|--. +.-+-+|.....+ .++..+.|...|+=..|++..+--+|+|+-..++..
T Consensus       104 ~~~~ck~k~~~IlGF~W~~--s~e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln  180 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTS--STEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN  180 (657)
T ss_pred             HHHHhccCcceeEEEEEec--CeeEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence            1  1222234477777864  34454444 3346677654332 234456677777766776544333444443555555


Q ss_pred             EEECCCCe
Q psy4653         213 IWDYQNKT  220 (229)
Q Consensus       213 iwd~~~~~  220 (229)
                      =+.++++.
T Consensus       181 pf~~~~~~  188 (657)
T KOG2377|consen  181 PFHFRAGT  188 (657)
T ss_pred             cEEEeece
Confidence            45555443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.88  E-value=3.4  Score=34.66  Aligned_cols=151  Identities=16%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             cCCCeEEEEEec------CeEEEEEcCCCCeEEEEEecC---cCeEEEEEcCCCCEEEEEeC------------------
Q psy4653          25 PTEPWMLASLYN------GHVHVWNHETNQNVKSFEVCD---LPVRAAKFVPRKNWIVTGSD------------------   77 (229)
Q Consensus        25 p~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~------------------   77 (229)
                      |+|++++++-.|      |.+.+.|-++-+.....+...   ..-..+.|.|..|.++|...                  
T Consensus       139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~  218 (461)
T PF05694_consen  139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG  218 (461)
T ss_dssp             SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred             CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence            688888886432      578889999887777765432   23466777888888888763                  


Q ss_pred             --CCeEEEEECCCcceEEEeccCCC--ceeEEEEc--CCCCE-EEEEeCCCcEEEEec--CCceeeeeeeec--------
Q psy4653          78 --DMQVCVFNYNTLERFHSFEAHSD--YVRCVAVH--PTQPF-LLTSSDDMLIKLWNW--EKAWACQQVFEG--------  140 (229)
Q Consensus        78 --d~~i~iwd~~~~~~~~~~~~h~~--~i~~v~~~--~~~~~-~~s~~~d~~v~lwd~--~~~~~~~~~~~~--------  140 (229)
                        ..++.+||..+.+.++.+.-..+  ....|.|.  |+..+ |+.+.-..+|.+|--  +..+....+..-        
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence              34799999999999888765433  24456664  44454 333344445555532  222333333211        


Q ss_pred             -----------ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653         141 -----------HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus       141 -----------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                                 -..-++.+.++.+|.-+.+++-.+|.||.||+...
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                       02346788888866666667779999999999653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.87  E-value=0.82  Score=34.76  Aligned_cols=64  Identities=8%  Similarity=0.052  Sum_probs=47.5

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcceEEE-------ec-------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy4653          65 FVPRKNWIVTGSDDMQVCVFNYNTLERFHS-------FE-------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE  129 (229)
Q Consensus        65 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-------~~-------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~  129 (229)
                      +...+++|++-+.+|.+.+||+.+++.+..       +.       .....|..+.+..+|.-+++-+ +|....|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            456788999999999999999998775432       11       2445688888888887776665 4678888853

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.79  E-value=3.5  Score=34.57  Aligned_cols=192  Identities=12%  Similarity=0.180  Sum_probs=88.7

Q ss_pred             CCCeEEEEE-ecCeEEEEEcCCC----CeEEEEEecC-------cCeEEEEEcCCCCEEEEEeC--C----CeEEEEECC
Q psy4653          26 TEPWMLASL-YNGHVHVWNHETN----QNVKSFEVCD-------LPVRAAKFVPRKNWIVTGSD--D----MQVCVFNYN   87 (229)
Q Consensus        26 ~~~~l~~~~-~dg~v~~wd~~~~----~~~~~~~~~~-------~~v~~~~~~~~~~~l~sg~~--d----~~i~iwd~~   87 (229)
                      +.++|++.+ ..+.|.+.|+.+.    +..+.++..+       ..-..+.-.|+|+.++++-.  +    |-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            567788876 7889999999852    3334433211       11234455678888877643  2    358888888


Q ss_pred             CcceEEEeccCC---CceeEEEEcCCCCEEEEEeC--------------------CCcEEEEecCCceeeeeeeeccee-
Q psy4653          88 TLERFHSFEAHS---DYVRCVAVHPTQPFLLTSSD--------------------DMLIKLWNWEKAWACQQVFEGHTH-  143 (229)
Q Consensus        88 ~~~~~~~~~~h~---~~i~~v~~~~~~~~~~s~~~--------------------d~~v~lwd~~~~~~~~~~~~~~~~-  143 (229)
                      +.+.....+...   ..-..+.|.|..+.++|+.-                    -.++.+||+...+....+--+..+ 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            877766655432   23446777888777777642                    357999999877544333223222 


Q ss_pred             eEEEEEE--cCCCCCEEEEEECCCcEEEEeCC-CC----CceEEEecC-----------------CCceEEEEEEeCCCc
Q psy4653         144 YVMQIVI--NPKDNNTFASASLDRTVKVWQLG-SA----SPNFTLEGH-----------------EKGVNCVDYYHGGDK  199 (229)
Q Consensus       144 ~v~~~~~--~~~~~~~l~s~~~d~~i~~wd~~-~~----~~~~~~~~h-----------------~~~v~~~~~~~~~~~  199 (229)
                      ....+.|  +|....-|+.+....+|..|-.. .+    +.+-.+...                 ..-+..|.++. ++.
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDr  324 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDR  324 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-TS-
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-CCC
Confidence            2344444  45443345555566666666442 22    111122110                 12245566542 333


Q ss_pred             CEEEEeeCCCeEEEEECCC
Q psy4653         200 PYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       200 ~~l~s~s~d~~i~iwd~~~  218 (229)
                      .+.+++-.+|.|+.||+..
T Consensus       325 fLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SS
T ss_pred             EEEEEcccCCcEEEEecCC
Confidence            3456677899999999964

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.75  E-value=3.4  Score=35.37  Aligned_cols=143  Identities=10%  Similarity=0.131  Sum_probs=88.9

Q ss_pred             cCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCcc-eEEEe
Q psy4653          25 PTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-------WIVTGSDDMQVCVFNYNTLE-RFHSF   95 (229)
Q Consensus        25 p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~sg~~d~~i~iwd~~~~~-~~~~~   95 (229)
                      .+..+++. |.....+.-.|++-|+.+..+..+.+.  -+.|.|..+       .-++|-.+..|.=.|++... .+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            34455544 456678888999999999988877754  567777532       23456666665555664322 22111


Q ss_pred             ccCCCceeEEEEcC----CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          96 EAHSDYVRCVAVHP----TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        96 ~~h~~~i~~v~~~~----~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                       ...+.++--.|+.    ..-+++.+|..|-|++||--.. .....+++-...|..+.... +|..+++-+ ..++.+-|
T Consensus       555 -esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta-~Gk~ilaTC-k~yllL~d  630 (776)
T COG5167         555 -ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTA-NGKHILATC-KNYLLLTD  630 (776)
T ss_pred             -eehhccccccccccccccCceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeec-CCcEEEEee-cceEEEEe
Confidence             1223444444443    2348999999999999995322 33445566666787788776 566666444 45777777


Q ss_pred             CC
Q psy4653         172 LG  173 (229)
Q Consensus       172 ~~  173 (229)
                      ++
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            64

>KOG1983|consensus

Probab=93.74  E-value=2.8  Score=39.32  Aligned_cols=31  Identities=10%  Similarity=0.265  Sum_probs=26.7

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCC
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHET   46 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~   46 (229)
                      ..-..++|+|....++.+...|.|+++....
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3567889999999999999999999997654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.64  E-value=2.3  Score=35.59  Aligned_cols=82  Identities=15%  Similarity=0.260  Sum_probs=54.6

Q ss_pred             eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEe---CCC---------------cC-EEEE
Q psy4653         144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH---GGD---------------KP-YLIS  204 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~---~~~---------------~~-~l~s  204 (229)
                      .+..+..+| ++.+.|....=|+|.++|+.++..++..+|-.+. .| .|..   ..+               .. +++-
T Consensus       309 ~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc-~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  309 EGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QC-GWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             eEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eE-EEEEeecccccccccccccCCCCcceEEEEEE
Confidence            356778888 4777777767789999999988777766664332 11 1110   000               11 2334


Q ss_pred             eeCCCeEEEEECCCCeEEEeeccC
Q psy4653         205 GADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       205 ~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +-.-|.|.||.+++|..+..+..+
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEEeC
Confidence            667899999999999888877653

>PRK10115 protease 2; Provisional

Probab=93.58  E-value=5.4  Score=35.97  Aligned_cols=195  Identities=9%  Similarity=-0.022  Sum_probs=100.4

Q ss_pred             CceEEEEEccCCCeEEEEEe-c----CeEEEEEcCCCCeEEE-EEecCcCeEEEEEcCCCCEEEEEeCC------CeEEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLY-N----GHVHVWNHETNQNVKS-FEVCDLPVRAAKFVPRKNWIVTGSDD------MQVCV   83 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~-d----g~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~d------~~i~i   83 (229)
                      -.+..+.++|++++|+.+.. +    -.+++-|+.+++.+.. +..   .-..+.|.++++.|+-...+      ..|..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            35777889999998887642 2    3588889988864322 211   12568999998866555432      35777


Q ss_pred             EECCCc--ceEEEeccCCCcee-EEEEcCCCCEEEEE---eCCCcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCC
Q psy4653          84 FNYNTL--ERFHSFEAHSDYVR-CVAVHPTQPFLLTS---SDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        84 wd~~~~--~~~~~~~~h~~~i~-~v~~~~~~~~~~s~---~~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  156 (229)
                      +++.+.  +....+........ ....+.++.+++..   ..++.+.+++..... ...............+. +..+.-
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  282 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF  282 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence            788776  33333443223333 33344477755433   334678888853211 11111111112222222 222323


Q ss_pred             EEEEEECCC--cEEEEeCCCCCceEEEecC-C-CceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         157 TFASASLDR--TVKVWQLGSASPNFTLEGH-E-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       157 ~l~s~~~d~--~i~~wd~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      ++.+.....  .|...++........+-.+ . ..+..+.+.  . ..++++...++.-+++-+.
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~-~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--T-DWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--C-CEEEEEEEeCCEEEEEEEc
Confidence            333322222  3433344422222344444 2 256666664  2 2467777778876665554

>KOG3630|consensus

Probab=93.57  E-value=1.6  Score=40.65  Aligned_cols=175  Identities=10%  Similarity=0.092  Sum_probs=106.0

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCC-------CCe---------EEEEEec-CcCeEEEEEcCCCCEEEEE--eC
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHET-------NQN---------VKSFEVC-DLPVRAAKFVPRKNWIVTG--SD   77 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-------~~~---------~~~~~~~-~~~v~~~~~~~~~~~l~sg--~~   77 (229)
                      .-+.++.+++...++++...+.+.++-...       ++.         ...+..+ +.++..+..++++...++-  +.
T Consensus        43 ~sn~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsn  122 (1405)
T KOG3630|consen   43 SSNNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSN  122 (1405)
T ss_pred             hhhhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecC
Confidence            346677888888899998888777765432       111         1222223 2355666667776654333  33


Q ss_pred             CCeEEEEECCCcce-----EEEeccCC------CceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeE
Q psy4653          78 DMQVCVFNYNTLER-----FHSFEAHS------DYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV  145 (229)
Q Consensus        78 d~~i~iwd~~~~~~-----~~~~~~h~------~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v  145 (229)
                      +-.|..||++....     ...+..|.      ....++.|.|.-. ..+....|+.|++..+....+....+. -....
T Consensus       123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~  201 (1405)
T KOG3630|consen  123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQ  201 (1405)
T ss_pred             CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccce
Confidence            33677889864221     12222221      2356888998766 456778899999988754322222221 23457


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec---C-CCceEEEEEE
Q psy4653         146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---H-EKGVNCVDYY  194 (229)
Q Consensus       146 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h-~~~v~~~~~~  194 (229)
                      ++++|+| .+..++.|-..|++.-|...-. ...++++   . ...|.++.|.
T Consensus       202 Tav~WSp-rGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  202 TAVLWSP-RGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             eeEEecc-ccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEe
Confidence            8999998 5899999999999999865322 1122221   1 2458888885

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.22  E-value=1.9  Score=29.82  Aligned_cols=109  Identities=11%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCC--------eEEEEEecCcCeEEEEEcC---C--CCEEEEEeCCCeEEEE
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--------NVKSFEVCDLPVRAAKFVP---R--KNWIVTGSDDMQVCVF   84 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--------~~~~~~~~~~~v~~~~~~~---~--~~~l~sg~~d~~i~iw   84 (229)
                      |..-.|....|.|++++.-|+|.|++.....        .+..+ .-+..|++++--+   +  ...|+.|+ ..++..|
T Consensus         1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaY   78 (136)
T PF14781_consen    1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY   78 (136)
T ss_pred             CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence            3455788888999999999999999987542        23333 2345666664433   2  34677764 5568999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcC----CCCEEEEEeCCCcEEEEecCC
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHP----TQPFLLTSSDDMLIKLWNWEK  130 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~----~~~~~~s~~~d~~v~lwd~~~  130 (229)
                      |+.....+.. +.-.+.|+++.+-.    +.+.++.|+ +.+|.-||.+.
T Consensus        79 DV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G  126 (136)
T PF14781_consen   79 DVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG  126 (136)
T ss_pred             EcccCchhhh-hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence            9976655432 22336677776632    233444443 55777777543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.15  E-value=4.7  Score=36.43  Aligned_cols=73  Identities=16%  Similarity=0.398  Sum_probs=50.0

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-------------eeee------e-ecceeeEEEEEEcCCC--CCEE
Q psy4653         101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-------------CQQV------F-EGHTHYVMQIVINPKD--NNTF  158 (229)
Q Consensus       101 ~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-------------~~~~------~-~~~~~~v~~~~~~~~~--~~~l  158 (229)
                      .|..|.++|+|.+++..|.. .|.|-.+...+.             |+..      + ..+...|.++.|+|..  +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCC-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            47899999999998877764 455555533211             1111      1 1234568899999963  5677


Q ss_pred             EEEECCCcEEEEeCCC
Q psy4653         159 ASASLDRTVKVWQLGS  174 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~  174 (229)
                      +.=..|+++|+||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            7778899999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.10  E-value=3.6  Score=32.53  Aligned_cols=99  Identities=16%  Similarity=0.203  Sum_probs=68.4

Q ss_pred             EEEEEccCCCeEEE-EEecCe-EEEEEcCCCCeEEEEEecCc--CeEEEEEcCCCCEEEEEeCC-----CeEEEEECCC-
Q psy4653          19 KCCDLHPTEPWMLA-SLYNGH-VHVWNHETNQNVKSFEVCDL--PVRAAKFVPRKNWIVTGSDD-----MQVCVFNYNT-   88 (229)
Q Consensus        19 ~~~~~~p~~~~l~~-~~~dg~-v~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~-   88 (229)
                      -.+.|||..+.-++ +-..|+ ..++|..+.+........+.  ..-.-.|+|+|.+|...-+|     |.|-|||... 
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            45788998765555 445664 56799998877666554332  23345699999999876544     6799999763 


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTS  117 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~  117 (229)
                      .+.+.++..|.-.=..+.+.+|+..++.+
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEe
Confidence            34566676665444678899999988776

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.08  E-value=0.91  Score=39.55  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=43.2

Q ss_pred             CCCEEEEEECCCcEEEEeCCC----CCceEEE-----------ec-----------CCCceEEEEEEe--CCCcCEEEEe
Q psy4653         154 DNNTFASASLDRTVKVWQLGS----ASPNFTL-----------EG-----------HEKGVNCVDYYH--GGDKPYLISG  205 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~----~~~~~~~-----------~~-----------h~~~v~~~~~~~--~~~~~~l~s~  205 (229)
                      ++..++.+..||.+.......    +......           .+           ....+..++...  -++..+|++-
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            456777778899888887654    1111100           00           011233334332  1245699999


Q ss_pred             eCCCeEEEEECCCCeEEEeec
Q psy4653         206 ADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       206 s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +.|+++|+||+++++++.+.+
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEec
Confidence            999999999999999988764

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460|consensus

Probab=93.02  E-value=3.7  Score=35.21  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=41.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEC---------CCcce---EEEec--------cCCCceeEEEEcCCC---CEEE
Q psy4653          59 PVRAAKFVPRKNWIVTGSDDMQVCVFNY---------NTLER---FHSFE--------AHSDYVRCVAVHPTQ---PFLL  115 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~---------~~~~~---~~~~~--------~h~~~i~~v~~~~~~---~~~~  115 (229)
                      +|..+..++.|..++-.+.+|.+.+.=.         +.++.   ++.+.        ...-.+...+|||+.   ..+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4777888999999888888985444321         22321   11111        111124566777754   4566


Q ss_pred             EEeCCCcEEEEecCC
Q psy4653         116 TSSDDMLIKLWNWEK  130 (229)
Q Consensus       116 s~~~d~~v~lwd~~~  130 (229)
                      .-++|..||+||+..
T Consensus       185 iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEecCcEEEEEecCC
Confidence            666677777777643

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.84  E-value=4.7  Score=33.22  Aligned_cols=143  Identities=10%  Similarity=0.028  Sum_probs=76.2

Q ss_pred             ceEEEEEccCCCeEEEEE-----------ecC-eEEEEEcCC--CCe--EEEEEecCcCeEEEEEcCCCCEEEEEeCCCe
Q psy4653          17 RVKCCDLHPTEPWMLASL-----------YNG-HVHVWNHET--NQN--VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ   80 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~-----------~dg-~v~~wd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~   80 (229)
                      ....++|.++|..+++-.           ..+ .|.+++-.+  |+.  ...|...-.....+.+.+++ +++ +.....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            456789999999776643           223 788887543  332  22332222345788888888 444 444443


Q ss_pred             EEEEECCCc-----c--eE-EEecc----CCCceeEEEEcCCCCEEEEEeCC-------------------CcEEEEecC
Q psy4653          81 VCVFNYNTL-----E--RF-HSFEA----HSDYVRCVAVHPTQPFLLTSSDD-------------------MLIKLWNWE  129 (229)
Q Consensus        81 i~iwd~~~~-----~--~~-~~~~~----h~~~i~~v~~~~~~~~~~s~~~d-------------------~~v~lwd~~  129 (229)
                      .++.|.+..     +  .+ ..+..    +......+.|.|++.+.++-+..                   +.|.-++.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            334354321     1  11 22322    23457789999999876655421                   334444443


Q ss_pred             CceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653         130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus       130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      .. ..+..-.++ .....++|++ ++.++++-..+
T Consensus       173 g~-~~e~~a~G~-rnp~Gl~~d~-~G~l~~tdn~~  204 (367)
T TIGR02604       173 GG-KLRVVAHGF-QNPYGHSVDS-WGDVFFCDNDD  204 (367)
T ss_pred             CC-eEEEEecCc-CCCccceECC-CCCEEEEccCC
Confidence            32 112221222 2235778887 67777764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.81  E-value=1  Score=32.75  Aligned_cols=31  Identities=16%  Similarity=0.120  Sum_probs=25.3

Q ss_pred             CceeEEEEcCCC------CEEEEEeCCCcEEEEecCC
Q psy4653         100 DYVRCVAVHPTQ------PFLLTSSDDMLIKLWNWEK  130 (229)
Q Consensus       100 ~~i~~v~~~~~~------~~~~s~~~d~~v~lwd~~~  130 (229)
                      ..|.+++|||.|      .+|++.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999964      3688899999999998643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.66  E-value=1.9  Score=32.74  Aligned_cols=69  Identities=16%  Similarity=0.131  Sum_probs=47.1

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-------E-------ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-------E-------VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      +.+...+.+|++-+.+|.+++||+.+++.+..-       .       .....|..+.+..+|.-|++= .+|....|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecc
Confidence            345667888999999999999999998764322       1       123457777777777766554 4566777776


Q ss_pred             CCcc
Q psy4653          87 NTLE   90 (229)
Q Consensus        87 ~~~~   90 (229)
                      +-+.
T Consensus        95 ~L~~   98 (219)
T PF07569_consen   95 DLGC   98 (219)
T ss_pred             ccce
Confidence            5433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.50  E-value=3.6  Score=31.01  Aligned_cols=102  Identities=14%  Similarity=0.269  Sum_probs=63.0

Q ss_pred             CEEEEEeCCCeEEEEECCC--cceEEEeccCCCceeEEEEcCCCCEEEEEeCCC------cEEEE-ecCCc----eeeee
Q psy4653          70 NWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM------LIKLW-NWEKA----WACQQ  136 (229)
Q Consensus        70 ~~l~sg~~d~~i~iwd~~~--~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~------~v~lw-d~~~~----~~~~~  136 (229)
                      +.|..+.....|.+|+++.  .+.+..|. --+.|..+.++..|++++|--.+.      .+|+| +++..    .....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4444446777899999873  33445554 347899999999999999875442      45654 33221    12222


Q ss_pred             eeecc---------------------eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         137 VFEGH---------------------THYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       137 ~~~~~---------------------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      .+.||                     ..++.+++..|.+|++++  +.++++.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g~~~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--GCGNKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--EcCCEEEEEEEEE
Confidence            22232                     123446666777787776  4466899998753

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.48  E-value=2.6  Score=37.67  Aligned_cols=111  Identities=13%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             eEEEEEcc--CCCeEEEEEecCeEEEEEcCC-------C----Ce------E--EEEEecCcCeEEEEEc--CCCCEEEE
Q psy4653          18 VKCCDLHP--TEPWMLASLYNGHVHVWNHET-------N----QN------V--KSFEVCDLPVRAAKFV--PRKNWIVT   74 (229)
Q Consensus        18 v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~-------~----~~------~--~~~~~~~~~v~~~~~~--~~~~~l~s   74 (229)
                      |+-+...-  ....|+++..||.|.+|.+++       .    +.      +  .........+.++++.  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444332  456888899999999997632       0    00      0  0111223478899998  77889999


Q ss_pred             EeCCCeEEEEECCCc--ceE-EEeccCCCceeEEEEcCCC---C---EEEEEeCCCcEEEEec
Q psy4653          75 GSDDMQVCVFNYNTL--ERF-HSFEAHSDYVRCVAVHPTQ---P---FLLTSSDDMLIKLWNW  128 (229)
Q Consensus        75 g~~d~~i~iwd~~~~--~~~-~~~~~h~~~i~~v~~~~~~---~---~~~s~~~d~~v~lwd~  128 (229)
                      +++...|.+|-+...  +.. ..-..|..-|.+|+|-++.   .   .++.++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            998888888865431  111 1111244568899997754   2   5677888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.07  E-value=6.1  Score=32.69  Aligned_cols=94  Identities=12%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             EEccCCC-eEEEEEecC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q psy4653          22 DLHPTEP-WMLASLYNG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH   98 (229)
Q Consensus        22 ~~~p~~~-~l~~~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h   98 (229)
                      +|.++|+ +|+++..||  .+.+-|+.+++..+..............+|+++.++-......+.-.|+++.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            5677885 445555555  6777888997765554433233335667788888765555667888899998876666666


Q ss_pred             CCceeEEEEc--CCCCEEE
Q psy4653          99 SDYVRCVAVH--PTQPFLL  115 (229)
Q Consensus        99 ~~~i~~v~~~--~~~~~~~  115 (229)
                      .+.+....|.  .++..++
T Consensus       122 ~~~~g~gt~v~n~d~t~~~  140 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLV  140 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEE
T ss_pred             cccccccceeeCCCccEEE
Confidence            6666545553  4455543

>PHA03098 kelch-like protein; Provisional

Probab=91.99  E-value=4.7  Score=34.97  Aligned_cols=103  Identities=10%  Similarity=0.000  Sum_probs=48.3

Q ss_pred             CCCeEEEEEec-----CeEEEEEcCCCCeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCcceEE
Q psy4653          26 TEPWMLASLYN-----GHVHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDD------MQVCVFNYNTLERFH   93 (229)
Q Consensus        26 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d------~~i~iwd~~~~~~~~   93 (229)
                      ++...+.|+.+     ..+..||..+.+-...-.. ....-.++. ..+++..+.|+.+      ..+..||+.+.+...
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            55666667654     3567788776543221000 001111222 2256666666632      357788887654322


Q ss_pred             EeccCCCc-eeEEEEcCCCCEEEEEeCCC--------cEEEEecCC
Q psy4653          94 SFEAHSDY-VRCVAVHPTQPFLLTSSDDM--------LIKLWNWEK  130 (229)
Q Consensus        94 ~~~~h~~~-i~~v~~~~~~~~~~s~~~d~--------~v~lwd~~~  130 (229)
                      .-...... -.++.. .++.+++.|+.+.        .+.+||...
T Consensus       421 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        421 GSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             cCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCC
Confidence            11111111 112222 3455666665432        377888754

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.96  E-value=4.1  Score=36.46  Aligned_cols=144  Identities=12%  Similarity=0.249  Sum_probs=87.6

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEE------EEE------------e----cCcCeEEEEE--cCCCCEEEEEeCCCeEE
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVK------SFE------------V----CDLPVRAAKF--VPRKNWIVTGSDDMQVC   82 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~------~~~------------~----~~~~v~~~~~--~~~~~~l~sg~~d~~i~   82 (229)
                      ..+|+.+ ..+.|.+|+...-....      .+.            .    ....|+.+..  .-....|+.+.+||.|.
T Consensus        49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            5566664 48999999986432211      110            0    0112333322  23445789999999999


Q ss_pred             EEECCC-------c----c---------eEEEeccCCCceeEEEEc--CCCCEEEEEeCCCcEEEEecCCc--eeeeeee
Q psy4653          83 VFNYNT-------L----E---------RFHSFEAHSDYVRCVAVH--PTQPFLLTSSDDMLIKLWNWEKA--WACQQVF  138 (229)
Q Consensus        83 iwd~~~-------~----~---------~~~~~~~h~~~i~~v~~~--~~~~~~~s~~~d~~v~lwd~~~~--~~~~~~~  138 (229)
                      +|.+++       .    +         +...+. -..++.+++++  ...+++|++++...|.||-....  ......-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            997632       1    0         001111 13467899999  77889999999999998875432  1111111


Q ss_pred             ecceeeEEEEEEcCCC--CC---EEEEEECCCcEEEEeC
Q psy4653         139 EGHTHYVMQIVINPKD--NN---TFASASLDRTVKVWQL  172 (229)
Q Consensus       139 ~~~~~~v~~~~~~~~~--~~---~l~s~~~d~~i~~wd~  172 (229)
                      ..+.+.|.++.|-+.+  +.   .+++++-.|++.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1255678888886543  22   7778889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.89  E-value=3  Score=36.38  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=44.6

Q ss_pred             cCCCeEEEEEecCeEEEEEcCC----CCeEEEE--Ee--------------------cCcCeEEEEEcC----CCCEEEE
Q psy4653          25 PTEPWMLASLYNGHVHVWNHET----NQNVKSF--EV--------------------CDLPVRAAKFVP----RKNWIVT   74 (229)
Q Consensus        25 p~~~~l~~~~~dg~v~~wd~~~----~~~~~~~--~~--------------------~~~~v~~~~~~~----~~~~l~s   74 (229)
                      ++...++.+..||.+.......    +......  ..                    ....+..+....    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            5777788899999988887764    2111111  00                    012355566665    6779999


Q ss_pred             EeCCCeEEEEECCCcceEEEe
Q psy4653          75 GSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        75 g~~d~~i~iwd~~~~~~~~~~   95 (229)
                      -+.|+++++||+++++.+...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.79  E-value=3.9  Score=34.99  Aligned_cols=146  Identities=11%  Similarity=0.122  Sum_probs=81.1

Q ss_pred             EcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCC-------EEEEEeCCCcEEEEecCCceeeee
Q psy4653          65 FVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-------FLLTSSDDMLIKLWNWEKAWACQQ  136 (229)
Q Consensus        65 ~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-------~~~s~~~d~~v~lwd~~~~~~~~~  136 (229)
                      ...+.++| ..|....++.-.|++.|+.+..+.-|.+-  -+.|.|.-+       .-+.|-++..|.--|.+-......
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            33344443 45555556777799999999888877664  677777532       234455566665545432221111


Q ss_pred             eeecceeeEEEEEEc---CCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEE
Q psy4653         137 VFEGHTHYVMQIVIN---PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI  213 (229)
Q Consensus       137 ~~~~~~~~v~~~~~~---~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~i  213 (229)
                      + .....+.+.-.|+   .....++|.||..|-||+||.-.......+++-...|..++...  ++.++++.+. ..+.+
T Consensus       553 v-~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta--~Gk~ilaTCk-~yllL  628 (776)
T COG5167         553 V-VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA--NGKHILATCK-NYLLL  628 (776)
T ss_pred             e-eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec--CCcEEEEeec-ceEEE
Confidence            1 1222333322222   12456999999999999999643322233455445666666643  3334443333 35666


Q ss_pred             EEC
Q psy4653         214 WDY  216 (229)
Q Consensus       214 wd~  216 (229)
                      -|+
T Consensus       629 ~d~  631 (776)
T COG5167         629 TDV  631 (776)
T ss_pred             Eec
Confidence            665

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.62  E-value=9.3  Score=33.90  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE--EEeccCCCceeEEEEc--CCCCEEEEEeCCCcEEEEecCCc----
Q psy4653          60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF--HSFEAHSDYVRCVAVH--PTQPFLLTSSDDMLIKLWNWEKA----  131 (229)
Q Consensus        60 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~h~~~i~~v~~~--~~~~~~~s~~~d~~v~lwd~~~~----  131 (229)
                      ..-+.-+.-++..++-+....+.|||.+.+..-  ..+ ...+.|..++|.  |+++.+++-|-.+.|.++.-...    
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            334444444555444444557999999876522  122 346789999995  78888999999999999864211    


Q ss_pred             ----eeeee-e-eecce-eeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653         132 ----WACQQ-V-FEGHT-HYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus       132 ----~~~~~-~-~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                          +...+ + ...++ ++|....|.+ +| .++.|+ ++.+.++|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G-~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLK-DG-TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEec-CC-eEEEEe-CCEEEEECC
Confidence                11111 1 22333 6788888876 45 444444 557888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.58  E-value=6.8  Score=32.24  Aligned_cols=71  Identities=14%  Similarity=0.086  Sum_probs=47.4

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEEecC--cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFEVCD--LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS   99 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~   99 (229)
                      ..++++..+|.|.-.|.++++.+.......  ..+.+-.+..+|+ |..++.++++..+|..+++.+..+....
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence            346666788989889999988766544332  1222222222555 7788889988888988888877766554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.21  E-value=1.3  Score=23.32  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=25.6

Q ss_pred             cCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEec
Q psy4653          25 PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVC   56 (229)
Q Consensus        25 p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~   56 (229)
                      |+++.|+++. .+++|.++|..+++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            6788787776 5889999999998887776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02790 Kelch-like protein; Provisional

Probab=90.32  E-value=11  Score=32.40  Aligned_cols=101  Identities=10%  Similarity=-0.032  Sum_probs=46.1

Q ss_pred             CCCeEEEEEec--CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCC
Q psy4653          26 TEPWMLASLYN--GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDM---QVCVFNYNTLERFHSFEAHS   99 (229)
Q Consensus        26 ~~~~l~~~~~d--g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~h~   99 (229)
                      ++...++|+.+  .++..||..+++-...-.... ..-.++. .-+++.-+.|+.++   .+..||+++.+....-.-..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            45555666643  357778776553322111000 0111121 22566667776553   46678887654322111111


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy4653         100 DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK  130 (229)
Q Consensus       100 ~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~  130 (229)
                      ..-...+..-++.+++.|+   .+-+||.+.
T Consensus       397 ~r~~~~~~~~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        397 PHYKSCALVFGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             ccccceEEEECCEEEEECC---ceEEecCCC
Confidence            1111111223456666664   466777653

>KOG3630|consensus

Probab=90.20  E-value=2.3  Score=39.63  Aligned_cols=111  Identities=11%  Similarity=0.009  Sum_probs=69.9

Q ss_pred             ceEEEEEccCCCeEEEE--EecCeEEEEEcCCCCe--------EEEEEe-cC--cCeEEEEEcCC-CCEEEEEeCCCeEE
Q psy4653          17 RVKCCDLHPTEPWMLAS--LYNGHVHVWNHETNQN--------VKSFEV-CD--LPVRAAKFVPR-KNWIVTGSDDMQVC   82 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~--~~dg~v~~wd~~~~~~--------~~~~~~-~~--~~v~~~~~~~~-~~~l~sg~~d~~i~   82 (229)
                      ++.-+...+|+...+..  ..+-.|..+|+++-..        +..... .+  .-..++.|+|. ....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            34444555676554443  3445888899875211        111110 11  23567788875 33466778899998


Q ss_pred             EEECCCcc-eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEec
Q psy4653          83 VFNYNTLE-RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW  128 (229)
Q Consensus        83 iwd~~~~~-~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~  128 (229)
                      +.-+.... .+..+. -....+|++|+|.|+.++.|-..|++..|-.
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec
Confidence            88765322 222222 3456899999999999999999999998864

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=89.56  E-value=11  Score=31.56  Aligned_cols=157  Identities=11%  Similarity=0.083  Sum_probs=77.7

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeE-----EEEEcCCCCEEEEEeCCCeEEEEE-CC
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVR-----AAKFVPRKNWIVTGSDDMQVCVFN-YN   87 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~-----~~~~~~~~~~l~sg~~d~~i~iwd-~~   87 (229)
                      .++.++.|..+. .|+.-..||.++++|+.... ...+.  .....|.     ...+...|-.++  ..++.+.+.+ ..
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCcc
Confidence            678888998754 56777789999999997433 11111  1111222     223333443333  3455544332 11


Q ss_pred             CcceEEEe---cc-----CCC-ceeE-EEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653          88 TLERFHSF---EA-----HSD-YVRC-VAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT  157 (229)
Q Consensus        88 ~~~~~~~~---~~-----h~~-~i~~-v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (229)
                      .....+.+   ..     +.- .... ..++.+....+....++.+.+-+-...   .. .. ..+++..++++| ++..
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~---~~-i~-~~~~i~~iavSp-ng~~  230 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF---KQ-ID-SDGPIIKIAVSP-NGKF  230 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---cc-cc-CCCCeEEEEECC-CCCE
Confidence            11011111   00     000 0111 233444444444445555553332111   01 11 235789999998 6788


Q ss_pred             EEEEECCCcEEEEeCCCCCceEEEe
Q psy4653         158 FASASLDRTVKVWQLGSASPNFTLE  182 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~~~~~~~  182 (229)
                      +|.-..+|.+.+..-.-.+.+.++.
T Consensus       231 iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  231 IALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             EEEEECCCCEEEEECcccceeEEee
Confidence            8877888888887654444444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.44  E-value=17  Score=33.30  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=46.9

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCe-------------EEEEEcC--CCCEEEEEeC----------CCeE
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPV-------------RAAKFVP--RKNWIVTGSD----------DMQV   81 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~sg~~----------d~~i   81 (229)
                      +..++.++.|+.+.-.|.+||+.+..|.... .+             ..+.-.|  -++.+++|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            3478888899999999999999987764211 11             0011111  1456666643          6889


Q ss_pred             EEEECCCcceEEEec
Q psy4653          82 CVFNYNTLERFHSFE   96 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~   96 (229)
                      +-+|.++++.+..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1900|consensus

Probab=88.75  E-value=17  Score=34.82  Aligned_cols=151  Identities=14%  Similarity=0.192  Sum_probs=85.3

Q ss_pred             eEEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEc-C-------CCCEEEEEeCCCcEEEEecCC
Q psy4653          60 VRAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVH-P-------TQPFLLTSSDDMLIKLWNWEK  130 (229)
Q Consensus        60 v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~-~-------~~~~~~s~~~d~~v~lwd~~~  130 (229)
                      -..+.+.|. ++.=+  +.|+.+.+|+++++..+..+.+-...|..|..- |       .=++++.-+.--.|.++-+..
T Consensus        81 ~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~  158 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF  158 (1311)
T ss_pred             eeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence            344455554 33333  358999999999877777777666666665543 2       223444444445666665422


Q ss_pred             cee--eeeeeecc------eeeEEEEEEcCCCCCEEEEEECCCcEEEEeC--CCC-----C----------------c-e
Q psy4653         131 AWA--CQQVFEGH------THYVMQIVINPKDNNTFASASLDRTVKVWQL--GSA-----S----------------P-N  178 (229)
Q Consensus       131 ~~~--~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~-----~----------------~-~  178 (229)
                      ...  ....+..+      .-.|.++.. ..+|..|++ |.|+  .+|.+  ...     +                | +
T Consensus       159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~-t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  159 DEFTGELSIFNTSFKISVDGVSVNCITY-TENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             ccccCcccccccceeeecCCceEEEEEe-ccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence            111  11222222      233566663 346766665 5555  44543  111     0                0 1


Q ss_pred             EEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         179 FTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       179 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ..+. .+.++|..+.+..  ..+++.+-+..++|+.||+..
T Consensus       235 ~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            1233 4566888888742  345888999999999999975

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.37  E-value=10  Score=29.47  Aligned_cols=151  Identities=9%  Similarity=-0.030  Sum_probs=85.1

Q ss_pred             ceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCcce-EE
Q psy4653          17 RVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN-YNTLER-FH   93 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd-~~~~~~-~~   93 (229)
                      .+.+.+.+|+++.+++.. .++.-.+|-...+....... .......-.|.+++...+....+...+++. ...++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999999887765 33333334333333333321 223677788999987777766666666663 222221 11


Q ss_pred             EeccC-C-CceeEEEEcCCCCEEEEEe---CCCcEEEEecCCcee--------eeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          94 SFEAH-S-DYVRCVAVHPTQPFLLTSS---DDMLIKLWNWEKAWA--------CQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        94 ~~~~h-~-~~i~~v~~~~~~~~~~s~~---~d~~v~lwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ..... . ..|..+.+||||..++.-.   .+++|.+=-+.....        ...+.......+..+.|.+. ..+++.
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~-~~L~V~  182 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD-STLVVL  182 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC-CEEEEE
Confidence            12211 1 2899999999999765443   457777765532111        01111122346788999874 444444


Q ss_pred             EE-CCCcEEE
Q psy4653         161 AS-LDRTVKV  169 (229)
Q Consensus       161 ~~-~d~~i~~  169 (229)
                      +. .+..+..
T Consensus       183 ~~~~~~~~~~  192 (253)
T PF10647_consen  183 GRSAGGPVVR  192 (253)
T ss_pred             eCCCCCceeE
Confidence            43 4443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00564 PQQ beta-propeller repeat

Probab=88.10  E-value=1.5  Score=21.80  Aligned_cols=25  Identities=8%  Similarity=0.154  Sum_probs=21.3

Q ss_pred             eEEEEEecCeEEEEEcCCCCeEEEE
Q psy4653          29 WMLASLYNGHVHVWNHETNQNVKSF   53 (229)
Q Consensus        29 ~l~~~~~dg~v~~wd~~~~~~~~~~   53 (229)
                      .+++++.+|.+...|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5788888999999999999887653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.87  E-value=12  Score=29.68  Aligned_cols=94  Identities=7%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe------CCCcEEEEecCCceeeeeeeec-----ceeeEE
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS------DDMLIKLWNWEKAWACQQVFEG-----HTHYVM  146 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~------~d~~v~lwd~~~~~~~~~~~~~-----~~~~v~  146 (229)
                      ...|++||++..+....-.+-.+.|+.+.|..+.+++++|.      ....+..||+.+..  -..+.+     -.+++.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcEE
Confidence            44699999987665443334457899999997777777663      45678899986541  212222     125666


Q ss_pred             EEEEcCCCCC-EEEEEE-C--CCcEEEEeCC
Q psy4653         147 QIVINPKDNN-TFASAS-L--DRTVKVWQLG  173 (229)
Q Consensus       147 ~~~~~~~~~~-~l~s~~-~--d~~i~~wd~~  173 (229)
                      .+.+...+.. ..++|. .  +..|.-||-.
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence            6665433443 333332 2  3356666644

>KOG2247|consensus

Probab=86.64  E-value=0.13  Score=43.05  Aligned_cols=107  Identities=10%  Similarity=0.090  Sum_probs=71.1

Q ss_pred             eEEEEEccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653          18 VKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE   96 (229)
Q Consensus        18 v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~   96 (229)
                      --.++|.-+++.++. +...+.+.+||+.+......-......-.-+.|++....++.|...|++.|++..+....-...
T Consensus        77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G  156 (615)
T KOG2247|consen   77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG  156 (615)
T ss_pred             HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc
Confidence            345667777776666 4568999999998743322111111112226788888889999899999999987765544444


Q ss_pred             cCCCceeEEEEcCCCCEEEEEeCCCcEEE
Q psy4653          97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKL  125 (229)
Q Consensus        97 ~h~~~i~~v~~~~~~~~~~s~~~d~~v~l  125 (229)
                      -|..++.++++.+.+. .+.++.|..+.+
T Consensus       157 kh~RRgtq~av~lEd~-vil~dcd~~L~v  184 (615)
T KOG2247|consen  157 KHQRRGTQIAVTLEDY-VILCDCDNTLSV  184 (615)
T ss_pred             ccccceeEEEecccce-eeecCcHHHHHH
Confidence            4889999999999764 344555554433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.43  E-value=18  Score=30.27  Aligned_cols=147  Identities=6%  Similarity=0.003  Sum_probs=75.5

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-----eE
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-----RF   92 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-----~~   92 (229)
                      ...+...+++..+++|..-.-++-||-....-...-......+..+.+.+++.+++++ .+|.+. +....++     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence            3445566777766665543333334432211011111223468889999998888776 455533 3333332     22


Q ss_pred             EEeccC--CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          93 HSFEAH--SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        93 ~~~~~h--~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ......  ...+..+.|.+++..+++| ..|.+.... +.++.-....  ..-....+.+.|.+ ++..++ .+.+|.|.
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~-~G~~G~il  394 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKGFV-LGNDGVLL  394 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCceEE-EeCCcEEE
Confidence            222221  2348889999877765554 567665553 2222211111  12234567888754 344554 46677776


Q ss_pred             EE
Q psy4653         169 VW  170 (229)
Q Consensus       169 ~w  170 (229)
                      -|
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            54

>PF01011 PQQ: PQQ enzyme repeat family

Probab=86.02  E-value=2.6  Score=21.95  Aligned_cols=28  Identities=11%  Similarity=0.140  Sum_probs=23.8

Q ss_pred             eEEEEEecCeEEEEEcCCCCeEEEEEec
Q psy4653          29 WMLASLYNGHVHVWNHETNQNVKSFEVC   56 (229)
Q Consensus        29 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~   56 (229)
                      .+++++.+|.|.-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            3566789999999999999999988754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.76  E-value=18  Score=29.45  Aligned_cols=50  Identities=16%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCcc--eEEEe----ccCCCceeEEEEcCC
Q psy4653          60 VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSF----EAHSDYVRCVAVHPT  110 (229)
Q Consensus        60 v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~----~~h~~~i~~v~~~~~  110 (229)
                      -..|.|.|+++++++ ...|.|++++.+...  .+..+    .........++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence            468999999988776 559999999833222  22222    123456789999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.51  E-value=4.8  Score=30.36  Aligned_cols=50  Identities=14%  Similarity=0.163  Sum_probs=37.3

Q ss_pred             CeEEEEEecCeEEEEEcCC--CCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC
Q psy4653          28 PWMLASLYNGHVHVWNHET--NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD   78 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d   78 (229)
                      +.|+.++....|.+|++..  .+....|..- +.|..+.++..|++|+|--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEee
Confidence            5666667778899999883  3444555433 579999999999999987544

>smart00564 PQQ beta-propeller repeat

Probab=85.50  E-value=3.1  Score=20.53  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          70 NWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        70 ~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ..+..++.+|.+..+|.++++.+..+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            36778889999999999888876643

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.48  E-value=21  Score=29.36  Aligned_cols=100  Identities=16%  Similarity=0.136  Sum_probs=54.3

Q ss_pred             CeEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--cc--eEEEeccCCCceeEEEEcCCCCEEEEEeCCCc
Q psy4653          59 PVRAAKFVPRKNWIVTGS-----------DDM-QVCVFNYNT--LE--RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML  122 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~-----------~d~-~i~iwd~~~--~~--~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~  122 (229)
                      ....|.|.++|+++++-.           ..+ .|.+++-..  ++  ....+.......+.+++.+++ ++++ +.. .
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~-~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP-D   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-e
Confidence            457789999999877642           223 677775432  22  233443334455789999988 4443 333 3


Q ss_pred             EE-EEecCCce----eeeee---eec----ceeeEEEEEEcCCCCCEEEEEE
Q psy4653         123 IK-LWNWEKAW----ACQQV---FEG----HTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus       123 v~-lwd~~~~~----~~~~~---~~~----~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      |. +.|.....    ....+   +..    +......+.+.| ++.+.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence            44 33543211    11111   211    123456788887 566666544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.39  E-value=16  Score=31.11  Aligned_cols=161  Identities=10%  Similarity=0.027  Sum_probs=91.2

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE-EEEEec-Cc----CeE-EEEEcCCCCEEEEEeCCCeEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV-KSFEVC-DL----PVR-AAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~-~~~~~~-~~----~v~-~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      +..--..|..+-..||++.|..-+. ..+.++++.+.... +++-.. ..    .|. .+.....|.-|++++.||-|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4444457888889999998877554 78888988764331 111111 11    122 1122334667888999998887


Q ss_pred             E-ECCCc-c----eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653          84 F-NYNTL-E----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT  157 (229)
Q Consensus        84 w-d~~~~-~----~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (229)
                      | |.... .    .++.++-...++..+.=..+.+-+++-+..|++.++..-..+...  ++.--..+.-+.++|. ..+
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL--~~~~~~~~~~~~~Sp~-~~~  371 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL--FERAYQAPQLVAMSPN-QAY  371 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee--hhhhhcCcceeeeCcc-cch
Confidence            7 55432 2    223333223344444444445567777888888877643322211  1111123445677884 556


Q ss_pred             EEEEECCCcEEEEeCCCCC
Q psy4653         158 FASASLDRTVKVWQLGSAS  176 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~  176 (229)
                      +++ ...+.|+++.+.+..
T Consensus       372 Ll~-e~~gki~~~~l~Nr~  389 (733)
T COG4590         372 LLS-EDQGKIRLAQLENRN  389 (733)
T ss_pred             hee-ecCCceEEEEecCCC
Confidence            654 567789999886543

>KOG1896|consensus

Probab=84.33  E-value=40  Score=32.31  Aligned_cols=177  Identities=13%  Similarity=0.226  Sum_probs=93.5

Q ss_pred             CeEEEEEcCCCCeEEEEEecC-cCeEEEEEc-----C--C--CCEEEEEeC---------CCeEEEEEC-----CCcce-
Q psy4653          37 GHVHVWNHETNQNVKSFEVCD-LPVRAAKFV-----P--R--KNWIVTGSD---------DMQVCVFNY-----NTLER-   91 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~-----~--~--~~~l~sg~~---------d~~i~iwd~-----~~~~~-   91 (229)
                      ..+.+-+..+.+.+..++..+ ..+.++...     .  .  .-+|++|..         .|.+.|+|+     +.+++ 
T Consensus      1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred             ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence            345665666655555544332 334555442     1  1  237888863         578899985     33432 


Q ss_pred             ----EEEe--ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          92 ----FHSF--EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        92 ----~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                          ++.+  +...+.|.+++ +-+|.++.+-|  -+|.+|++++. ....-.|..-.-++.++..  - .++++.|.--
T Consensus      1084 t~~KlKel~~eE~KGtVsavc-eV~G~l~~~~G--qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~--v-knlIl~gDV~ 1157 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVC-EVRGHLLSSQG--QKIIVRKLDRDSELIGVAFIDLPLYVHSMKV--V-KNLILAGDVM 1157 (1366)
T ss_pred             ccceeeeeehhhcccceEEEE-EeccEEEEccC--cEEEEEEeccCCcceeeEEeccceeEEehhh--h-hhheehhhhh
Confidence                2221  12234454443 33455544443  48999999443 2222333222222333222  1 3456666655


Q ss_pred             CcEEEEeCCCCCceEEEecC---CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         165 RTVKVWQLGSASPNFTLEGH---EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +.|.+.-++..-....+-+.   .-.+.++.|.-.+..-.++.+..|+.|+++-+...
T Consensus      1158 ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1158 KSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred             hceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence            66766665543333333222   22467788876655546788889999999887644

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.26  E-value=14  Score=29.26  Aligned_cols=91  Identities=8%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCcceEEEecc-----CCCceeE
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS------DDMQVCVFNYNTLERFHSFEA-----HSDYVRC  104 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~------~d~~i~iwd~~~~~~~~~~~~-----h~~~i~~  104 (229)
                      -..|.+||..+.+-...-..-...|..+.|..+.++++.|.      ....+-.||.+.... ..+..     -.+.|..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence            45799999988765444333456799999996677777775      344677888876643 22222     1356888


Q ss_pred             EEEcC-CCC-EEEEEe-CCC--cEEEEe
Q psy4653         105 VAVHP-TQP-FLLTSS-DDM--LIKLWN  127 (229)
Q Consensus       105 v~~~~-~~~-~~~s~~-~d~--~v~lwd  127 (229)
                      +.+.. +.. +.+.|. .++  .|.-||
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEc
Confidence            87743 333 333332 333  466665

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.03  E-value=4.2  Score=21.12  Aligned_cols=27  Identities=15%  Similarity=0.241  Sum_probs=22.4

Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          71 WIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        71 ~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      .+..++.+|.+...|.++++.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            455669999999999999999887754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG1916|consensus

Probab=83.73  E-value=1  Score=40.83  Aligned_cols=157  Identities=19%  Similarity=0.317  Sum_probs=87.5

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-----------cCeEEEEEcCCCCEEEEEeCCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-----------LPVRAAKFVPRKNWIVTGSDDM   79 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~sg~~d~   79 (229)
                      +..--+.|..+.|-+..-++-.+-.++.+++.+.+.... ..+..|.           +.+.--..+|||..++.+..||
T Consensus       179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG  257 (1283)
T KOG1916|consen  179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG  257 (1283)
T ss_pred             CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence            333335667777777777777777888888866554321 1112222           1222234789999999999999


Q ss_pred             eEEEEECC-C----cceEEEeccCCC-ceeEEEEcCCCC---------EEEEE-eCCCcEEEEecCCceeeeeeeeccee
Q psy4653          80 QVCVFNYN-T----LERFHSFEAHSD-YVRCVAVHPTQP---------FLLTS-SDDMLIKLWNWEKAWACQQVFEGHTH  143 (229)
Q Consensus        80 ~i~iwd~~-~----~~~~~~~~~h~~-~i~~v~~~~~~~---------~~~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~  143 (229)
                      .++.|.+- +    -.+++..+.|.+ .-.|.-|+.+..         +++++ .....+++|... .++|..  .....
T Consensus       258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a-~w~Cll--~~~~d  334 (1283)
T KOG1916|consen  258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA-PWQCLL--DKLID  334 (1283)
T ss_pred             ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc-chhhhh--hhccc
Confidence            88888652 2    234566777763 333433555422         34444 445678888753 344431  11111


Q ss_pred             eEEEEEEcCCCCC------------EEEEEECCCcEEEEeCC
Q psy4653         144 YVMQIVINPKDNN------------TFASASLDRTVKVWQLG  173 (229)
Q Consensus       144 ~v~~~~~~~~~~~------------~l~s~~~d~~i~~wd~~  173 (229)
                      .|..|.  |.++.            .+++-+-|+.|.+|.=+
T Consensus       335 ~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  335 GVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             ceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            222222  32322            24445677888888543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.72  E-value=12  Score=25.97  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCceeee-------eeeecceeeEEEEE---EcCC-CCCEEEEEECCCcEEEEeCC
Q psy4653         105 VAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ-------QVFEGHTHYVMQIV---INPK-DNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus       105 v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~-------~~~~~~~~~v~~~~---~~~~-~~~~l~s~~~d~~i~~wd~~  173 (229)
                      -.|....+-|+.++.-++|.|.+........       ..+ .-...|++++   +.|. +.+.|+-|+ ...+..||..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            3566666777888888888888765332111       111 1122344443   3322 344555555 5679999998


Q ss_pred             CCCceEEEecCCCceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         174 SASPNFTLEGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       174 ~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ....++-.+- .++++++.+-.-++ ..-|+-.+.++.|.-||.+-.+.-=++
T Consensus        82 ~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   82 NNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            8776654443 36788877743222 223555566688888888766554443

>KOG3616|consensus

Probab=83.34  E-value=3.3  Score=37.17  Aligned_cols=95  Identities=15%  Similarity=0.210  Sum_probs=57.1

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      .-+.++.-||.++.++.+..||++.++|.......+..... .|-..+.|...|  |++.+.|+.+.-|.-+ +-.-+.+
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~-~p~~nlv~tnhg--l~~~tsdrr~la~~~d-gvvqqqf   90 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA-KPKENLVFTNHG--LVTATSDRRALAWKED-GVVQQQF   90 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc-CCccceeeeccc--eEEEeccchhheeecc-Ccchhhc
Confidence            45788999999999999999999999998875543332221 222333444333  6777778877777533 2111111


Q ss_pred             ---ccCCCceeEEEEcCCCCEE
Q psy4653          96 ---EAHSDYVRCVAVHPTQPFL  114 (229)
Q Consensus        96 ---~~h~~~i~~v~~~~~~~~~  114 (229)
                         ........++...|..+.+
T Consensus        91 dyndqsekefss~~cdptaqnv  112 (1636)
T KOG3616|consen   91 DYNDQSEKEFSSILCDPTAQNV  112 (1636)
T ss_pred             cccchhhhhccceecCchhhhh
Confidence               1122345556666655443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.94  E-value=24  Score=28.69  Aligned_cols=103  Identities=13%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-------ecCcCeEEEEEcCC----CCEEEEEeCC------C
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-------VCDLPVRAAKFVPR----KNWIVTGSDD------M   79 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-------~~~~~v~~~~~~~~----~~~l~sg~~d------~   79 (229)
                      .-.+++|.|++.. +++...|.|.+.+ ..+.....+.       ..+.....+.++|+    +.+.++.+..      .
T Consensus         3 ~P~~~a~~pdG~l-~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRL-LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCE-EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcE-EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3478999999865 5556699999999 4443312111       12345799999994    3333333311      1


Q ss_pred             --eEEEEECCCc-------ceE-EEecc---CCCceeEEEEcCCCCEEEEEeCCC
Q psy4653          80 --QVCVFNYNTL-------ERF-HSFEA---HSDYVRCVAVHPTQPFLLTSSDDM  121 (229)
Q Consensus        80 --~i~iwd~~~~-------~~~-~~~~~---h~~~i~~v~~~~~~~~~~s~~~d~  121 (229)
                        .|.-|.....       +.+ ..+..   ....-..|.|.|++.++++.+..+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence              2333333222       111 11222   223456799999998777665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.14  E-value=26  Score=27.94  Aligned_cols=158  Identities=9%  Similarity=0.104  Sum_probs=91.2

Q ss_pred             CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec--cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy4653          57 DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC  134 (229)
Q Consensus        57 ~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~  134 (229)
                      ...+.++.|+|+.+.|.+-.+...-.++=...|+.++.+.  +-. --..+.+..++++.++--.++.+.++.+......
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            4469999999999988777776655555444566666543  222 2357888888888888888888888876543111


Q ss_pred             e---------eeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceE---EEecCCC-------ceEEEEEEe
Q psy4653         135 Q---------QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF---TLEGHEK-------GVNCVDYYH  195 (229)
Q Consensus       135 ~---------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~h~~-------~v~~~~~~~  195 (229)
                      .         ..........-.++|.|.+. .|..+-.-.-+.++.........   ....+..       .+..+.|..
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            1         11111244566889999655 44445555667777655332111   1111211       244455532


Q ss_pred             CCCcCEEEEeeCCCeEEEEECC
Q psy4653         196 GGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       196 ~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                       ..+.+|+=+-+++.+.-.|.+
T Consensus       243 -~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         243 -ITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             -CCCcEEEEecCCceEEEEecC
Confidence             233345445556666555554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=80.17  E-value=6.6  Score=20.46  Aligned_cols=28  Identities=14%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             EEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         201 YLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++++...+++|.++|..+++.+..+..+
T Consensus         6 lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         6 LYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            4455556889999999999888877653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK13684 Ycf48-like protein; Provisional

Probab=80.06  E-value=31  Score=28.10  Aligned_cols=150  Identities=7%  Similarity=0.033  Sum_probs=76.6

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEE-EECCCcceEEEec-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc--ee
Q psy4653          58 LPVRAAKFVPRKNWIVTGSDDMQVCV-FNYNTLERFHSFE-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA--WA  133 (229)
Q Consensus        58 ~~v~~~~~~~~~~~l~sg~~d~~i~i-wd~~~~~~~~~~~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~--~~  133 (229)
                      ..+..+.+.|++.++++| ..|.+.. ++- .++.-.... .-...+.++.+.++++.++.+ ..|.+++=..+.+  +.
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            357888888888777665 4554332 222 222222222 234578899999998876665 4566643222222  11


Q ss_pred             eeeeeec-ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec---CCCceEEEEEEeCCCcCEEEEeeCCC
Q psy4653         134 CQQVFEG-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---HEKGVNCVDYYHGGDKPYLISGADDR  209 (229)
Q Consensus       134 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~d~  209 (229)
                      ....... -...+..+.+.+ ++..++ ++.+|.+.. ....++.-...+.   -......+.|...  + ..+..+..|
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~--~-~~~~~G~~G  323 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDP--E-KGFVLGQRG  323 (334)
T ss_pred             cccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCC--C-ceEEECCCc
Confidence            1111001 112356777776 444444 556775553 3443333222221   1224566666432  2 244567778


Q ss_pred             eEEEEEC
Q psy4653         210 LVKIWDY  216 (229)
Q Consensus       210 ~i~iwd~  216 (229)
                      .|.-|+-
T Consensus       324 ~il~~~~  330 (334)
T PRK13684        324 VLLRYVG  330 (334)
T ss_pred             eEEEecC
Confidence            8877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		8e-85
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-84
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-83
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-83
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-18
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-12
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-15
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-13
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-08
2h9l_A	329	Wdr5delta23 Length = 329		1e-13
2h9l_A	329	Wdr5delta23 Length = 329		3e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-13
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-13
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-13
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-13
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-13
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-13
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-13
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-13
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-13
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-13
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-13
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-13
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-13
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-13
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-12
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-11
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-11
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-11
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		9e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-11
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-11
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-11
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-11
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-11
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		9e-11
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-09
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		6e-09
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		7e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		8e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-06
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		6e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		8e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		9e-04

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score =  309 bits (792), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3   LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
           ++LDIK+  + RSDRVK  D HPTEPW+L +LY+G V +WN+ET   V+S +V + PVRA
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
            KF+ RKNWI+ GSDD ++ VFNYNT E+   FEAH DY+R +AVHPT+P++L+ SDD+ 
Sbjct: 61  GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
           +KLWNWE  WA +Q FEGH H+VM +  NPKD +TFAS  LDRTVKVW LG ++PNFTL 
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
            G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLE 
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score =  307 bits (786), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3   LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
           ++LDIK+  + RSDRVK  D HPTEPW+L +LY+G V +WN+ET   V+S +V + PVRA
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
            KF+ RKNWI+ GSDD ++ VFNYNT E+   FEAH DY+R +AVHPT+P++L+ SDD+ 
Sbjct: 61  GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
           +KLWNWE  WA +Q FEGH H+VM +  NPKD +TFAS  LDRTVKVW LG ++PNFTL 
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
            G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLE 
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3   LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
           ++LDIK+  + RSDRVK  D HPTEPW+L +LY+G V +WN+ET   V+S +V + PVRA
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
            KF+ RKNWI+ GSDD ++ VFNYNT E+   FEAH DY+R +AVHPT+P++L+ SDD+ 
Sbjct: 61  GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
           +KLWNWE  WA +Q FEGH H+VM +  NPKD +TFAS  LDRTVKVW LG ++PNFTL 
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
            G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLE 
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 3   LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
           ++LDIK+  + RSDRVK  D HPTEPW+L +LY+G V +WN+ET   V+S +V + PVRA
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
            KF+ RKNWI+ GSDD ++ VFNYNT E+   FEAH DY+R +AVHPT+P++L+ SDD+ 
Sbjct: 61  GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
           +KLWNWE  WA +Q FEGH H+VM +  NPKD +TFAS  LDRTVKVW LG ++PNFTL 
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
            G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLE 
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 9/217 (4%)
Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
           + LT  S  V      P    + ++  +  V +WN    Q++++       V    F P 
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPD 355
Query: 69  KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
              I + SDD  V ++N N  +   +   HS  VR VA  P    + ++SDD  +KLWN 
Sbjct: 356 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 413
Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
            +     Q   GH+  V  +  +P D+ T ASAS D+TVK+W   +     TL GH   V
Sbjct: 414 -RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 470
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             V +    D   + S +DD+ VK+W+ +N   +QTL
Sbjct: 471 RGVAFSP--DGQTIASASDDKTVKLWN-RNGQLLQTL 504

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 22/241 (9%)
Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
           D +R L   +D V+      +   + +   +  + +W+ +  + +++    D  V +   
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
           +P  + IV+ S D  + ++   T     +F  H ++VR V  +     + + S+D  +++
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-------------------FASASLDRT 166
           W       C+     H H V  I   P+ + +                     S S D+T
Sbjct: 261 WVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           +K+W + +     TL GH+  V  V ++ GG   +++S ADD+ +++WDY+NK C++TL 
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 227 S 227
           +
Sbjct: 378 A 378

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
           ++   H   V  V  HP    ++++S+D  IK+W++E     ++  +GHT  V  I  + 
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
                 AS S D T+K+W         T+ GH+  V+ V     GD  +++S + D+ +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIK 217
Query: 213 IWDYQNKTCVQTL 225
           +W+ Q   CV+T 
Sbjct: 218 MWEVQTGYCVKTF 230

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 10/220 (4%)
Query: 5   LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
           +  +R L    ++V C D    +  +++S  +G V VW+  T     +  +    V A  
Sbjct: 54  MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 65  FVPRKNWIVTGSDDMQVCVF------NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
           + P    I  G  D +  V+      N N   +  S   H++Y+   +   +   +LT+S
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQLGSASP 177
            D    LW+ E     Q  F GH   V+ + + P +  NTF S   D+   VW + S   
Sbjct: 174 GDGTCALWDVESGQLLQS-FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
               E HE  VN V YY  GD     SG+DD   +++D +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLR 270

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 6/164 (3%)
Query: 69  KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
           K  IV+ S D +V V++  T  + H+      +V   A  P+   +     D    ++  
Sbjct: 76  KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135
Query: 129 -----EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
                E   A ++    HT+Y+        D     +AS D T  +W + S     +  G
Sbjct: 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL-TASGDGTCALWDVESGQLLQSFHG 194
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           H   V C+D          +SG  D+   +WD ++  CVQ  E+
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 11  LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
           L   +  V+C  LH  E  +++   +  + VW+ ET Q +         VR  ++  R+ 
Sbjct: 195 LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR- 251
Query: 71  WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
            +V+G+ D  V V++  T    H+ + H++  R  ++      +++ S D  I++W+ E 
Sbjct: 252 -VVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---HEKG 187
              C     GH      + +    +N   S + D TVK+W + +     TL+G   H+  
Sbjct: 309 G-NCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ---TLESG 228
           V C+ +    +K ++I+ +DD  VK+WD +    ++   TLESG
Sbjct: 365 VTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 404

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 4/222 (1%)
Query: 4   RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA 63
           RLD++  L      V   D+  T P   +S  + H+ +W+ E  + +KS +   +     
Sbjct: 69  RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 128
Query: 64  KFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI 123
            F P   ++ TG+   +V +F   + ++ +S +    ++  +A  P   +L + + D +I
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
            +++           EGH   +  +  +P D+    +AS D  +K++ +  A+   TL G
Sbjct: 189 NIFDIATG-KLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
           H   V  V +    D  + +S + D+ VK+WD   +TCV T 
Sbjct: 247 HASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVHTF 286

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 72  IVTGSDDMQVCVFNY--NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
           +VTGS D  V V+ +    L+   S E H   V  V +  T P   +SS D  I+LW+ E
Sbjct: 51  VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
                + +  G       +  +P D+   A+ +    V ++ + S    ++L+   K + 
Sbjct: 111 NGKQIKSIDAGPVD-AWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
            + Y    D  YL SGA D ++ I+D      + TLE 
Sbjct: 169 SIAY--SPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 151 NPKDNN-TFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLISGAD 207
           N K+N+ T  + SLD  VKVW+      +   +LEGH+ GV  VD  H    P   S + 
Sbjct: 43  NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSL 100
Query: 208 DRLVKIWDYQNKTCVQTLESG 228
           D  +++WD +N   ++++++G
Sbjct: 101 DAHIRLWDLENGKQIKSIDAG 121

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 15/229 (6%)
Query: 2   PLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
           P  L   R L   S +V   D  P + W++++  +G + VWN  T+Q   + ++    V 
Sbjct: 53  PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112
Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYV-RCVAVHPTQPF 113
              F P    +  G  D    +FN ++       +        H  Y   C  V   +  
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 114 LLTSSDDMLIKLWNWEKAWAC----QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV 169
           L+T S D    LW+            +   GHT  V+ + IN  + N F S S D TV++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 170 WQLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
           W L   S    T  GHE  +N V ++  G +    +G+DD   +++D +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQR--FGTGSDDGTCRLFDMR 279

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 88  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 208 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 265
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 266 QTKEIVQKLQ 275

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 12  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 68
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 69  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 95  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 215 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 272
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 273 QTKEIVQKLQ 282

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 19  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 75
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 106 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 226 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 283
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 284 QTKEIVQKLQ 293

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 30  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 86
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 95  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 215 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 272
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 273 QTKEIVQKLQ 282

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 19  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 75
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 95  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 215 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 272
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 273 QTKEIVQKLQ 282

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 19  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 75
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 89  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 209 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 266
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 267 QTKEIVQKLQ 276

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 13  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 69
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 89  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 209 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 266
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 267 QTKEIVQKLQ 276

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 13  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 69
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 85  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 205 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 262
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 263 QTKEIVQKLQ 272

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 9   YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 65
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 66  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 90  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 210 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 267
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 268 QTKEIVQKLQ 277

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 14  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 70
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 113 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 233 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 290
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 291 QTKEIVQKLQ 300

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 37  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 93
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 94  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 128

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 94  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 214 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 271
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 272 QTKEIVQKLQ 281

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 18  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 74
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 109

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 212 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 269
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 270 QTKEIVQKLQ 279

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 16  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
Query: 7   IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
           +K  L   +  V      P   W+ AS  +  + +W     +  K+     L +    + 
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 67  PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
              N +V+ SDD  + +++ ++ +   + + HS+YV C   +P    +++ S D  +++W
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHE 185
           +  K   C +    H+  V  +  N +D +   S+S D   ++W   S     TL +   
Sbjct: 138 D-VKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
             V+ V +   G   Y+++   D  +K+WDY    C++T
Sbjct: 196 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKT 232

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    A++S D+ +K+W         T+ GH+ G++  
Sbjct: 16  YALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 212 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 269
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 270 QTKEIVQKLQ 279

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 16  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D LV IW+ 
Sbjct: 231 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNL 288
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 289 QTKEIVQKLQ 298

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A +    GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 35  YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 91
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 92  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Query: 70  NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
           N+ V+ S D  + ++N    +  + F  H+  V  VA  P    +++   D  +++WN +
Sbjct: 80  NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 130 KAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
                      HT +V  +  +P  D     S   D  VKVW L +      L+GH   V
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYV 199
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
             V      D     S   D + ++WD      +  + +G
Sbjct: 200 TSVTVSP--DGSLCASSDKDGVARLWDLTKGEALSEMAAG 237

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)
Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           +R+LT  S  V+   L     + L+  ++G + +W+     + + F      V +  F  
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 68  RKNWIVTGSDDMQVCVFNYNTLERF---HSFEAHSDYVRCVAVHPT--QPFLLTSSDDML 122
               IV+ S D  + ++N     ++      E H D+V CV   P   QP ++++S D  
Sbjct: 483 DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT 542
Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
           +K+WN       +    GHT YV  + ++P D +  AS   D  V +W L      ++LE
Sbjct: 543 VKVWNLSNC-KLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE 600
Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            +    + +         Y +  A +  +KIWD ++K+ V+ L+
Sbjct: 601 AN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 73  VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN--WEK 130
           ++GS D ++ +++         F  H+  V  VA       ++++S D  IKLWN   E 
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 131 AWACQQVFEGHTHYVMQIVINPKD-NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
            +   +  EGH  +V  +  +P     T  SAS D+TVKVW L +     TL GH   V+
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
            V      D     SG  D +V +WD      + +LE+
Sbjct: 566 TVAVSP--DGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 4/190 (2%)
Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T     +  AH
Sbjct: 92  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P      
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDY 216
           A A+LD T+K+W         T  GH+    C+  ++   G K +++SG++D +V IW+ 
Sbjct: 212 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNMVYIWNL 269
Query: 217 QNKTCVQTLE 226
           Q K  VQ L+
Sbjct: 270 QTKEIVQKLQ 279

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A      GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 16  YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           I+TGS D  V V++ NT E  ++   H + V  + +      ++T S D  I +W+    
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP 243
Query: 132 --WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
                ++V  GH   V  +     D+    SAS DRT+KVW   +     TL GH++G+ 
Sbjct: 244 TDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           C+ Y        ++SG+ D  +++WD +   C++ LE 
Sbjct: 301 CLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEG 334

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
           D+    S   D T+K+W   +      L GH   V C+ Y    D+  +I+G+ D  V++
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRV 197
Query: 214 WDYQNKTCVQTL 225
           WD      + TL
Sbjct: 198 WDVNTGEMLNTL 209

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 5/215 (2%)
Query: 11  LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
           L   +  V      P   W+ +S  +  + +W     +  K+     L +    +    N
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71  WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
            +V+ SDD  + +++ ++ +   + + HS+YV C   +P    +++ S D  +++W+  K
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VK 140
Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVN 189
              C +    H+  V  +  N +D +   S+S D   ++W   S     TL +     V+
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
            V +   G   Y+++   D  +K+WDY    C++T
Sbjct: 200 FVKFSPNG--KYILAATLDNDLKLWDYSKGKCLKT 232

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +A      GHT  V  +  +P +    AS+S D+ +K+W         T+ GH+ G++  
Sbjct: 16  YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-- 72
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           D     D   L+S +DD+ +KIWD  +  C++TL+
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 47  NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA 106
           N N  S    DL +R+  F P   ++ TG++D  + +++    +     + H   +  + 
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 172
Query: 107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
             P+   L++ S D  +++W+  +   C          V  + ++P D    A+ SLDR 
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRA 230
Query: 167 VKVWQLGSA-------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-- 217
           V+VW   +        S N +  GH+  V  V +   G    ++SG+ DR VK+W+ Q  
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VVSGSLDRSVKLWNLQNA 288
Query: 218 -NKTCVQTLESG 228
            NK+  +T  SG
Sbjct: 289 NNKSDSKTPNSG 300

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
           Y+  +  +P D    A+ + DR +++W + +      L+GHE+ +  +DY+  GDK  L+
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LV 181
Query: 204 SGADDRLVKIWDYQNKTCVQTL--ESGI 229
           SG+ DR V+IWD +   C  TL  E G+
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGV 209

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVF--NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
           VR   + P  N++ + S D   C++  N +  E   + E H + V+ VA  P+   L T 
Sbjct: 64  VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 118 SDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
           S D  + +W  + E  + C  V   HT  V  +V +P      ASAS D TVK+++    
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEED 182
Query: 176 S--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
                 TLEGHE  V  + +   G +  L S +DDR V+IW
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQR--LASCSDDRTVRIW 221

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)
Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           +R L   S  V    +     + L+  ++G + +W+  T    + F      V +  F  
Sbjct: 56  QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFH-SFEAHSDYVRCVAVHP--TQPFLLTSSDDMLIK 124
               IV+GS D  + ++N   + ++    E+HS++V CV   P  + P +++   D L+K
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
           +WN       +    GHT Y+  + ++P D +  AS   D    +W L      +TL+G 
Sbjct: 176 VWNLANC-KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           +  +N + +       Y +  A    +KIWD + K  V  L+
Sbjct: 234 DI-INALCF---SPNRYWLCAATGPSIKIWDLEGKIIVDELK 271

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 73  VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW 132
           ++GS D  + +++  T      F  H+  V  VA       +++ S D  IKLWN     
Sbjct: 79  LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 133 ACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 E H+ +V  +  +P  +N    S   D+ VKVW L +        GH   +N V
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                 D     SG  D    +WD      + TL+ G
Sbjct: 199 TVSP--DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)
Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           +R L   S  V    +     + L+  ++G + +W+  T    + F      V +  F  
Sbjct: 79  QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFH-SFEAHSDYVRCVAVHP--TQPFLLTSSDDMLIK 124
               IV+GS D  + ++N   + ++    E+HS++V CV   P  + P +++   D L+K
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
           +WN       +    GHT Y+  + ++P D +  AS   D    +W L      +TL+G 
Sbjct: 199 VWNLANC-KLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           +  +N + +       Y +  A    +KIWD + K  V  L+
Sbjct: 257 DI-INALCF---SPNRYWLCAATGPSIKIWDLEGKIIVDELK 294

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 73  VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW 132
           ++GS D  + +++  T      F  H+  V  VA       +++ S D  IKLWN     
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 133 ACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 E H+ +V  +  +P  +N    S   D+ VKVW L +        GH   +N V
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                 D     SG  D    +WD      + TL+ G
Sbjct: 222 TVSP--DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 4   RLDIKRKLTARSDRVKCCDLH--PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
           R+ ++ + T R    K   +H       +L++  +G + +W+  T   V +  +    V 
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
              + P  N++  G  D    ++N  T E           H+ Y+ C         ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
           S D    LW+ E        F GHT  VM + + P D   F S + D + K+W +     
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
             T  GHE  +N + ++  G+     +G+DD   +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           +++ S D ++ +++  T  + H+    S +V   A  P+  ++     D +  ++N +  
Sbjct: 70  LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
               +V     GHT Y+        D+N   ++S D T  +W + +     T  GH   V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             +      D    +SGA D   K+WD +   C QT 
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 4   RLDIKRKLTARSDRVKCCDLH--PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
           R+ ++ + T R    K   +H       +L++  +G + +W+  T   V +  +    V 
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
              + P  N++  G  D    ++N  T E           H+ Y+ C         ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
           S D    LW+ E        F GHT  VM + + P D   F S + D + K+W +     
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
             T  GHE  +N + ++  G+     +G+DD   +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           +++ S D ++ +++  T  + H+    S +V   A  P+  ++     D +  ++N +  
Sbjct: 70  LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
               +V     GHT Y+        D+N   ++S D T  +W + +     T  GH   V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             +      D    +SGA D   K+WD +   C QT 
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 4   RLDIKRKLTARSDRVKCCDLH-PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVR 61
           R+ ++ + T R    K   +H  T+  +L S   +G + +W+  T   V +  +    V 
Sbjct: 53  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 112
Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
              + P  N++  G  D    ++N  T E           H+ Y+ C         ++TS
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 171
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
           S D    LW+ E        F GHT  VM + + P D   F S + D + K+W +     
Sbjct: 172 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 229
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
             T  GHE  +N + ++  G+     +G+DD   +++D +
Sbjct: 230 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 267

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           +V+ S D ++ +++  T  + H+    S +V   A  P+  ++     D +  ++N +  
Sbjct: 81  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
               +V     GHT Y+        D+N   ++S D T  +W + +     T  GH   V
Sbjct: 141 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 198
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             +      D    +SGA D   K+WD +   C QT 
Sbjct: 199 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 233

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 4   RLDIKRKLTARSDRVKCCDLH-PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVR 61
           R+ ++ + T R    K   +H  T+  +L S   +G + +W+  T   V +  +    V 
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
              + P  N++  G  D    ++N  T E           H+ Y+ C         ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
           S D    LW+ E        F GHT  VM + + P D   F S + D + K+W +     
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
             T  GHE  +N + ++  G+     +G+DD   +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           +V+ S D ++ +++  T  + H+    S +V   A  P+  ++     D +  ++N +  
Sbjct: 70  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
               +V     GHT Y+        D+N   ++S D T  +W + +     T  GH   V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             +      D    +SGA D   K+WD +   C QT 
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 4   RLDIKRKLTARSDRVKCCDLH-PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVR 61
           R+ ++ + T R    K   +H  T+  +L S   +G + +W+  T   V +  +    V 
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTS 117
              + P  N++  G  D    ++N  T E           H+ Y+ C         ++TS
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS 160
Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
           S D    LW+ E        F GHT  VM + + P D   F S + D + K+W +     
Sbjct: 161 SGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC 218
Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
             T  GHE  +N + ++  G+     +G+DD   +++D +
Sbjct: 219 RQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLR 256

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           +V+ S D ++ +++  T  + H+    S +V   A  P+  ++     D +  ++N +  
Sbjct: 70  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 132 WACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
               +V     GHT Y+        D+N   ++S D T  +W + +     T  GH   V
Sbjct: 130 EGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             +      D    +SGA D   K+WD +   C QT 
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76  SDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
           +DD ++ ++   N NT +  H+ +AH+  V C++ +P   F+L T S D  + LW+    
Sbjct: 253 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 FE H   + Q+  +P +    AS+  DR + VW L       + E  E G   +
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
            + HGG            ++P++I S ++D ++++W
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76  SDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
           +DD ++ ++   N NT +  H+ +AH+  V C++ +P   F+L T S D  + LW+    
Sbjct: 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 FE H   + Q+  +P +    AS+  DR + VW L       + E  E G   +
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
            + HGG            ++P++I S ++D ++++W
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76  SDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
           +DD ++ ++   N NT +  H+ +AH+  V C++ +P   F+L T S D  + LW+    
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 FE H   + Q+  +P +    AS+  DR + VW L       + E  E G   +
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
            + HGG            ++P++I S ++D ++++W
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 76  SDDMQVCVFNY---NTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
           +DD ++ +++    NT +  HS +AH+  V C++ +P   F+L T S D  + LW+    
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 FE H   + Q+  +P +    AS+  DR + VW L       + E  E G   +
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL 366
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
            + HGG            ++P++I S ++D ++++W
Sbjct: 367 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 17/156 (10%)
Query: 76  SDDMQVCVFNY---NTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
           +DD ++ +++     T +  H  +AH+  V C++ +P   F+L T S D  + LW+    
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 FE H   + Q+  +P +    AS+  DR + VW L       + E  E G   +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
            + HGG            ++P++I S ++D +++IW
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Query: 17   RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS 76
            +V CC L P   ++     +G + +     N+   S       VR  +F      +++ S
Sbjct: 963  QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022
Query: 77   DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
            +D  + V+N+ T + +   +AH + V+   +      LL+ S D  +K+WN       ++
Sbjct: 1023 EDSVIQVWNWQTGD-YVFLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITG-RIER 1079
Query: 137  VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG 196
             F  H   V+   I+  D   F+S S D+T K+W     SP   L+GH   V C  +   
Sbjct: 1080 DFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--S 1136
Query: 197  GDKPYLISGADDRLVKIWDYQN 218
             D   L +G D+  ++IW+  +
Sbjct: 1137 LDGILLATGDDNGEIRIWNVSD 1158

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
           D++  A+ S D+ VK+W   +     T + H + VNC  + +  +   L +G++D  +K+
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 214 WDYQNKTCVQTL 225
           WD   K C  T+
Sbjct: 728 WDLNQKECRNTM 739

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Query: 17   RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS 76
            +V CC L P   ++     +G + +     N+   S       VR  +F      +++ S
Sbjct: 970  QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1029
Query: 77   DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
            +D  + V+N+ T + +   +AH + V+   +      LL+ S D  +K+WN       ++
Sbjct: 1030 EDSVIQVWNWQTGD-YVFLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITG-RIER 1086
Query: 137  VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG 196
             F  H   V+   I+  D   F+S S D+T K+W     SP   L+GH   V C  +   
Sbjct: 1087 DFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 197  GDKPYLISGADDRLVKIWDYQN 218
            G    L +G D+  ++IW+  +
Sbjct: 1146 G--ILLATGDDNGEIRIWNVSD 1165

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
           D++  A+ S D+ VK+W   +     T + H + VNC  + +  +   L +G++D  +K+
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 214 WDYQNKTCVQTL 225
           WD   K C  T+
Sbjct: 735 WDLNQKECRNTM 746

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 76  SDDMQVCVFNY---NTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA 131
           +DD ++ +++     T +  H  +AH+  V C++ +P   F+L T S D  + LW+    
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                 FE H   + Q+  +P +    AS+  DR + VW L       + E  E G   +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 192 DYYHGG------------DKPYLI-SGADDRLVKIW 214
            + HGG            ++P++I S ++D + +IW
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 36  NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94
           +GH  ++N       K  +  D   V  AK   R+  + T   D++V   N+N       
Sbjct: 74  DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID- 132
Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
            +AH   +  +   P+   L++SS DM +K+W+  K  +  +   GH   V  I I  + 
Sbjct: 133 -QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEK---GVNCVDYYHGGDK 199
            N   SASLD T+++W+ G+ +   T    E    GVN +  + G D+
Sbjct: 191 RNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 237

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 36  NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94
           +GH  ++N       K  +  D   V  AK   R+  + T   D++V   N+N       
Sbjct: 77  DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID- 135
Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
            +AH   +  +   P+   L++SS DM +K+W+  K  +  +   GH   V  I I  + 
Sbjct: 136 -QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEK---GVNCVDYYHGGDK 199
            N   SASLD T+++W+ G+ +   T    E    GVN +  + G D+
Sbjct: 194 RNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 9/183 (4%)
Query: 50  VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
           V+SF+     V+         + ++ S D  + +++  T E +  F  H   V  V +  
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
               +++ S D  IK+W  +    C     GH  +V Q+ + P      D+ T  SA  D
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           + VK W L          GH   +N +      D   + S   D  + +W+   K    T
Sbjct: 176 KXVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 225 LES 227
           L +
Sbjct: 234 LSA 236

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50  VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
           V+SF+     V+         + ++ S D  + +++  T E +  F  H   V  V +  
Sbjct: 52  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
               +++ S D  IK+W  +    C     GH  +V Q+ + P      D+ T  SA  D
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           + VK W L          GH   +N +      D   + S   D  + +W+   K  + T
Sbjct: 170 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 225 LES 227
           L +
Sbjct: 228 LSA 230

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50  VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
           V+SF+     V+         + ++ S D  + +++  T E +  F  H   V  V +  
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
               +++ S D  IK+W  +    C     GH  +V Q+ + P      D+ T  SA  D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           + VK W L          GH   +N +      D   + S   D  + +W+   K  + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
           L +
Sbjct: 234 LSA 236

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50  VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
           V+SF+     V+         + ++ S D  + +++  T E +  F  H   V  V +  
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
               +++ S D  IK+W  +    C     GH  +V Q+ + P      D+ T  SA  D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           + VK W L          GH   +N +      D   + S   D  + +W+   K  + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
           L +
Sbjct: 234 LSA 236

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50  VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
           V+SF+     V+         + ++ S D  + +++  T E +  F  H   V  V +  
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
               +++ S D  IK+W  +    C     GH  +V Q+ + P      D+ T  SA  D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           + VK W L          GH   +N +      D   + S   D  + +W+   K  + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
           L +
Sbjct: 234 LSA 236

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 9/183 (4%)
Query: 50  VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
           V+SF+     V+         + ++ S D  + +++  T E +  F  H   V  V +  
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLD 164
               +++ S D  IK+W  +    C     GH  +V Q+ + P      D+ T  SA  D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           + VK W L          GH   +N +      D   + S   D  + +W+   K  + T
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 225 LES 227
           L +
Sbjct: 234 LSA 236

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-------PNFTLEGHEKGVNCVD 192
           GHT  V+ I   P ++N  AS S D TV VW++           P  TLEGH K V  V 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV- 137
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
            +H   +  L+S   D ++ +WD      V TL
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 27/179 (15%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIKLWNWE 129
           +V+GS D  V V++       H FE H+  VRC+ +  +    +++T S D  + +W   
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDN---------------------NTFASASLDRTVK 168
           K  +      G  H    +   P++N                     N   S S D T+ 
Sbjct: 236 KESSVPD--HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           VW +      + L GH   +    Y H  ++   IS + D  ++IWD +N   + TL+ 
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDH--ERKRCISASMDTTIRIWDLENGELMYTLQG 350

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIKLWNWE 129
           +V+GS D  V V++       H FE H+  VRC+ +  +    +++T S D  + +W   
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 130 KAWACQQVFEGHTHYVMQIVINPKDN---------------------NTFASASLDRTVK 168
           K  +      G  H    +   P++N                     N   S S D T+ 
Sbjct: 236 KESSVPD--HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLI 293
Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           VW +      + L GH   +    Y H  ++   IS + D  ++IWD +N     TL+ 
Sbjct: 294 VWDVAQXKCLYILSGHTDRIYSTIYDH--ERKRCISASXDTTIRIWDLENGELXYTLQG 350

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQ 111
            +R+  + P  + +  GS D  V ++           ++     E H + V+ VA     
Sbjct: 60  AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 112 PFLLTSSDDMLIKLWNWEKA---WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK 168
            +L T S D  + +W  +++   + C  V + H+  V  ++ +P +    AS+S D TV+
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVR 178
Query: 169 VWQLGSASPN--FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
           +W+           L GHE  V   D+        L SG+DD  V++W Y  
Sbjct: 179 IWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-------PNFTLEGHEKGVNCVD 192
           GHT  V+ I   P ++N  AS S D TV VW++           P  TLEGH K V  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV- 137
Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
            +H   +  L+S   D ++ +WD      V TL
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
           +++GS D    V+   +L   ++ +AH+  V     V  ++   LT+S D  IKLW  +K
Sbjct: 117 VISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK 174
Query: 131 AWACQQVFEG-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN 189
                + F G H   V  + +   D+  F S S D  +K+    +     T EGHE  V 
Sbjct: 175 V---IKTFSGIHNDVVRHLAV--VDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
           C+     GD   ++S  +DR V+IW  +N +  Q +
Sbjct: 230 CIKLLPNGD---IVSCGEDRTVRIWSKENGSLKQVI 262

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 37  GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW-IVTGSDDMQVCVFNYNTLERFHSF 95
           GHV +++  T+    + +   +   +  F P + + I++GSDD  V +F     +   +F
Sbjct: 129 GHVFLFDTGTSNGNLTGQARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 96  EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-------GHTHYVMQI 148
             H+ +V  V  +P      ++  D  I L+N         VFE        H+  V  +
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGL 245
Query: 149 VINPKDNNTFASASLDRTVKVWQLGS 174
             +P D    ASAS D+T+K+W + +
Sbjct: 246 TWSP-DGTKIASASADKTIKIWNVAT 270

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 73  VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN--WEK 130
           ++ S D  + +++  T   +  F  H   V  VA  P    +L++  +  IKLWN   E 
Sbjct: 92  ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 131 AWACQQVFEGHTHYVMQIVINP--KDNNT-------FASASLDRTVKVWQLGSASPNFTL 181
            ++  +  E H+ +V  +  +P  K  N        FAS   D  +KVW   +    +T 
Sbjct: 152 KFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF 209
Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
           + HE  VN +     G   Y+ +G  D+ + IWD  N T  Q
Sbjct: 210 KAHESNVNHLSISPNGK--YIATGGKDKKLLIWDILNLTYPQ 249

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 73  VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKA 131
           V+G  D  V V++ +      S+ AHS  V CVA  P +    L+  +D  I LW+  K 
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 132 WACQQV-FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
               ++ F         +  +P+ ++TFA       V +  + +     T   H + +  
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274
Query: 191 VDY-YHGGDKPYLISGADDRLVKIWD 215
           + Y YH    P+L S ++D  V + D
Sbjct: 275 LAYSYH--SSPFLASISEDCTVAVLD 298

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 42/237 (17%)
Query: 18  VKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVC--------DLP------VRA 62
           +   D+ P E  +ML+   +G + +++ E N + +S+  C        D P      V  
Sbjct: 46  INTLDIEPVEGRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104
Query: 63  AKFVPRKNWIVTGSD-DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP------FLL 115
            ++ P    + T S  D  + V++ NTL+    F    ++   V  H   P       + 
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF----NFEETVYSHHMSPVSTKHCLVA 160
Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
             +    ++L +  K+ +C  + +GH   ++ +  +P+ +   A+AS D  VK+W +  A
Sbjct: 161 VGTRGPKVQLCDL-KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219
Query: 176 SPNF-TLEGH----EKGVNCVDYYHGG---------DKPYLISGADDRLVKIWDYQN 218
           S    TL+ H     + V   +  H G         D  +L++   D  +++W+  N
Sbjct: 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 7/192 (3%)
Query: 30  MLASLYNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85
           +L +  +G V +W  + N+ +   + C    D  V     +      V+GS D+ + V++
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 86  YNTLERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
                   S+ AH+  V CVA  P +    L+ S+D  I LW+        Q+      Y
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Query: 145 V-MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
           +   +  +P+ +  F     + TV +    S S   +   H + V  +  +     P+L 
Sbjct: 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL-VFSPHSVPFLA 274
Query: 204 SGADDRLVKIWD 215
           S ++D  + + D
Sbjct: 275 SLSEDCSLAVLD 286

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 89  LERFHSFEAHSDYVRCVAVH---PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
           L+ +   +A  ++  C   +    + P L  +    +I++ N      C + + GH + +
Sbjct: 55  LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAI 113
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
            ++  +P+D N   S S D  +++W + +    +    +EGH   V   DY   G+K  +
Sbjct: 114 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK--I 171
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
           +S   D  +K+W   +K  +  ++
Sbjct: 172 MSCGMDHSLKLWRINSKRMMNAIK 195

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 89  LERFHSFEAHSDYVRCVAVH---PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
           L+ +   +A  ++  C   +    + P L  +    +I++ N      C + + GH + +
Sbjct: 96  LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN-PITMQCIKHYVGHGNAI 154
Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
            ++  +P+D N   S S D  +++W + +    +    +EGH   V   DY   G+K  +
Sbjct: 155 NELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK--I 212
Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
           +S   D  +K+W   +K  +  ++
Sbjct: 213 MSCGMDHSLKLWRINSKRMMNAIK 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-120
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-45
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	9e-33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	7e-20
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	6e-14
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-43
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-40
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-38
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-34
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-34
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-23
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-23
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-07
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-42
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-41
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-23
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-12
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-11
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	5e-42
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-40
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-36
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	8e-34
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-14
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-39
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-37
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-37
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-37
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-35
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-34
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-34
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-33
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-33
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-31
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-39
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	7e-37
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-35
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-34
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-25
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-22
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	1e-20
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-39
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-33
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-28
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-20
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	9e-12
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-38
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-38
3ow8_A	321	WD repeat-containing protein 61; structural genomi	5e-38
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-35
3ow8_A	321	WD repeat-containing protein 61; structural genomi	8e-25
3ow8_A	321	WD repeat-containing protein 61; structural genomi	4e-10
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-38
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-32
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-30
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-30
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	7e-26
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-20
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-19
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-10
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	6e-38
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-36
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-32
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-28
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	8e-22
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-36
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-31
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	6e-31
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-26
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-22
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	5e-14
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-36
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	7e-33
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-31
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	9e-24
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-17
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-36
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-34
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-33
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	8e-32
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-29
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-36
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	7e-33
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	8e-29
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	4e-28
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-16
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-36
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-35
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-32
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-28
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-36
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	6e-32
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	7e-31
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-28
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-18
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-35
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	3e-35
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-32
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-31
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	3e-24
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	3e-18
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-35
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	6e-32
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-31
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	4e-29
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-28
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-25
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-18
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-35
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-35
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-28
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-27
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-26
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-21
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-20
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-18
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-17
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	7e-35
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-30
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	4e-27
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-24
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	8e-16
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	9e-35
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	7e-33
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	8e-33
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	9e-26
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	3e-25
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	4e-17
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-10
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-34
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-31
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	7e-30
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-28
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-21
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	5e-20
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-08
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-34
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	5e-31
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-25
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	6e-21
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-11
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	6e-34
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	6e-31
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	4e-27
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	1e-25
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-22
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-17
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	9e-34
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-33
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-27
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	4e-22
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	4e-17
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	5e-33
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	5e-33
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-31
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-28
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	9e-26
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	7e-17
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	9e-33
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-32
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	8e-30
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-29
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	3e-22
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	9e-33
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-31
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-25
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-24
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	2e-32
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	7e-31
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-23
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-22
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-32
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-27
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	1e-22
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	2e-19
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-16
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-31
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	4e-31
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	8e-31
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-30
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	4e-29
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	7e-25
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	7e-22
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-30
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-24
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-22
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-21
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-14
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	5e-08
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-30
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-30
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-27
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	6e-26
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-08
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	9e-30
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-29
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-24
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	6e-14
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-08
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-29
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	9e-28
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	3e-27
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	3e-26
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-21
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	9e-18
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-29
3jrp_A	379	Fusion protein of protein transport protein SEC13	4e-27
3jrp_A	379	Fusion protein of protein transport protein SEC13	7e-27
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-26
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-17
3jrp_A	379	Fusion protein of protein transport protein SEC13	4e-16
2pm7_B	297	Protein transport protein SEC13, protein transport	3e-29
2pm7_B	297	Protein transport protein SEC13, protein transport	3e-28
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-27
2pm7_B	297	Protein transport protein SEC13, protein transport	5e-27
2pm7_B	297	Protein transport protein SEC13, protein transport	5e-18
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-16
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-28
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-26
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-25
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-23
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-22
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	5e-14
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-09
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-28
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	7e-28
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	8e-28
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	6e-24
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-22
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	9e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	8e-13
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	8e-28
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	9e-25
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-20
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	5e-20
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	5e-10
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-27
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	9e-24
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-23
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	2e-20
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	6e-18
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-27
3jro_A	753	Fusion protein of protein transport protein SEC13	5e-27
3jro_A	753	Fusion protein of protein transport protein SEC13	3e-26
3jro_A	753	Fusion protein of protein transport protein SEC13	4e-26
3jro_A	753	Fusion protein of protein transport protein SEC13	5e-16
3jro_A	753	Fusion protein of protein transport protein SEC13	3e-12
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-27
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-25
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	5e-25
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-24
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-17
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-24
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	7e-24
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-22
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	6e-17
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	5e-16
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	8e-09
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-06
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-24
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	1e-22
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-20
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	1e-17
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-09
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-23
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	4e-13
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	8e-21
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	6e-14
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	3e-11
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	4e-10
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	9e-07
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	7e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-18
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	9e-16
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	3e-12
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	6e-04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	4e-18
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	9e-17
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-10
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	9e-05
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	2e-15
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	3e-13
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	4e-09
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	4e-09
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	5e-07
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	3e-05
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-15
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	5e-13
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	2e-07
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	2e-04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	2e-04
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	2e-13
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	3e-05

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  359 bits (922), Expect = e-120
 Identities = 135/225 (60%), Positives = 172/225 (76%), Gaps = 1/225 (0%)

Query: 3   LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA 62
           ++LDIK+  + RSDRVK  D HPTEPW+L +LY+G V +WN+ET   V+S +V + PVRA
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60

Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
            KF+ RKNWI+ GSDD ++ VFNYNT E+   FEAH DY+R +AVHPT+P++L+ SDD+ 
Sbjct: 61  GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120

Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL- 181
           +KLWNWE  WA +Q FEGH H+VM +  NPKD +TFAS  LDRTVKVW LG ++PNFTL 
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180

Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            G E+GVN VDYY   DKPY+I+ +DD  +KIWDYQ K+CV TLE
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  160 bits (407), Expect = 2e-45
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
           R +      V+       + W++    +  + V+N+ T + V  FE     +R+    P 
Sbjct: 49  RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108

Query: 69  KNWIVTGSDDMQVCVFNYNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLW 126
           K ++++GSDD+ V ++N+        +FE H  +V CVA +P  P    S   D  +K+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168

Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
           +  ++     +  G    V  +   P  D     +AS D T+K+W   + S   TLEGH 
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228

Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             V+   ++     P +ISG++D  +KIW+       +TL 
Sbjct: 229 SNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKVEKTLN 267

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  124 bits (312), Expect = 9e-33
 Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 15/224 (6%)

Query: 7   IKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVC-DLPVRAAK 64
           +++        V C   +P +P   AS   +  V VW+   +    +     +  V    
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191

Query: 65  F--VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
           +  +P K +++T SDD+ + +++Y T     + E H   V     HPT P +++ S+D  
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251

Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINP-KDNNTFASASLDRTVKVWQLGSASPNFTL 181
           +K+WN    +  ++           I  +P    N  AS   D    V  LG+  P  +L
Sbjct: 252 LKIWNSST-YKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSL 309

Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
           +   K V               S     +++  +       + L
Sbjct: 310 DPVGKLVWSGGKNA------AASDIFTAVIRGNE--EVEQDEPL 345

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 86.7 bits (215), Expect = 7e-20
 Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 25/227 (11%)

Query: 9   RKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           + L    +R  C   HPT     +AS ++    V +   ++   S +     V    +  
Sbjct: 264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV----WSG 319

Query: 68  RKNWIVTGSDDMQVCVFNYNTLER-----FHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
            KN   +      +        +           +   + + +A  P   F+    D   
Sbjct: 320 GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEY 379

Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
           +                         V  P D+N++A       +K ++      ++++ 
Sbjct: 380 VIYT-------ALAWRNKAFGKCQDFVWGP-DSNSYALIDETGQIKYYKNFKEVTSWSVP 431

Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
            H      +D    G    L+    D  V  +D+ N T V+ ++   
Sbjct: 432 MHS----AIDRLFSG---ALLGVKSDGFVYFFDWDNGTLVRRIDVNA 471

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 28/214 (13%), Positives = 59/214 (27%), Gaps = 12/214 (5%)

Query: 15  SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWI 72
              V     HPT P +++   +G + +WN  T +  K+  V           P  RKN+I
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287

Query: 73  VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW 132
            +G D+    V +    E   S +     V     +     + T+      ++   E   
Sbjct: 288 ASGFDNG-FTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346

Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVD 192
              +       +   +  +P +            V    L                    
Sbjct: 347 LQTKELGSVDVFPQSLAHSP-NGRFVTVVGDGEYVIYTALA------WRNKAFGKCQDFV 399

Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           +    +        +   +K +    +    ++ 
Sbjct: 400 WGPDSN--SYALIDETGQIKYYKNFKEVTSWSVP 431

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  149 bits (378), Expect = 5e-43
 Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 13/218 (5%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
           + L    D V  C L      +++   +  + VW+  T + +++       V +++    
Sbjct: 112 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD- 169

Query: 69  KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
            N I++GS D  + V+N  T E  H+   H+  VRC+ +H  +  +++ S D  +++W+ 
Sbjct: 170 -NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI 226

Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
           E    C  V  GH   V  +     D     S + D  VKVW   + +   TL+GH   V
Sbjct: 227 ET-GQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282

Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             + +    D  +++SG+ D  +++WD +   C+ TL 
Sbjct: 283 YSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  143 bits (363), Expect = 1e-40
 Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVH-VWNHETNQNVKSFEVCDLP 59
                 I   L  +  +V         PW  A +    +   W     ++ K  +  D  
Sbjct: 62  KCKEEGIDEPLHIKRRKVIKPGFIH-SPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDH 120

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
           V         N IV+GSDD  + V++  T +   +   H+  V    +      +++ S 
Sbjct: 121 VITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
           D  +K+WN E    C     GHT  V  + ++ K      S S D T++VW + +     
Sbjct: 178 DRTLKVWNAET-GECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLH 233

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            L GH   V CV Y    D   ++SGA D +VK+WD + +TC+ TL+
Sbjct: 234 VLMGHVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  137 bits (346), Expect = 2e-38
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 12/188 (6%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + VWN ET + + +       VR      +   +V+GS D  + V++  T +  H    H
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQCLHVLMGH 238

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
              VRCV     +  +++ + D ++K+W+ E    C    +GHT+ V  +     D    
Sbjct: 239 VAAVRCVQYDGRR--VVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF---DGIHV 292

Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
            S SLD +++VW + + +   TL GH+   + ++         L+SG  D  VKIWD + 
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIKT 348

Query: 219 KTCVQTLE 226
             C+QTL+
Sbjct: 349 GQCLQTLQ 356

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  125 bits (317), Expect = 4e-34
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 9/191 (4%)

Query: 36  NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
           +  +     +     +   +    V    F+                 +    L+     
Sbjct: 55  DNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVL 114

Query: 96  EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
           + H D+V    +      +++ SDD  +K+W+      C +   GHT  V    +     
Sbjct: 115 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRD--- 169

Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
           N   S S DRT+KVW   +     TL GH   V C+       +  ++SG+ D  +++WD
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL----HEKRVVSGSRDATLRVWD 225

Query: 216 YQNKTCVQTLE 226
            +   C+  L 
Sbjct: 226 IETGQCLHVLM 236

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  125 bits (317), Expect = 4e-34
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 19/224 (8%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
             L   +  V+C  LH      + S   +  + VW+ ET Q +         VR  ++  
Sbjct: 193 HTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-- 247

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
               +V+G+ D  V V++  T    H+ + H++ V  +        +++ S D  I++W+
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWD 305

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---H 184
            E    C     GH      + +     N   S + D TVK+W + +     TL+G   H
Sbjct: 306 VETG-NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361

Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           +  V C+ +    +K ++I+ +DD  VK+WD +    ++ L + 
Sbjct: 362 QSAVTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 401

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V VW+ ET   + + +     V + +F      +V+GS D  + V++  T    H+   H
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGH 318

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVINPKDN 155
                 + +      L++ + D  +K+W+ +    C Q  +G   H   V  +  N    
Sbjct: 319 QSLTSGMELKDN--ILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNK--- 372

Query: 156 NTFASASLDRTVKVWQLGSASPNFTL-----EGHEKGVNCVDYYHGGDKPYLISGADDR- 209
           N   ++S D TVK+W L +      L      G    V  +   +   K     G+ +  
Sbjct: 373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN--TKLVCAVGSRNGT 430

Query: 210 ---LVKIWD 215
               + + D
Sbjct: 431 EETKLLVLD 439

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 95.4 bits (238), Expect = 4e-23
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 8/158 (5%)

Query: 69  KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
           + W +  ++D  +                    V       +           +   W  
Sbjct: 47  RYWRIL-AEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRR 105

Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
            +     +V +GH  +V+   +     N   S S D T+KVW   +     TL GH  GV
Sbjct: 106 GEL-KSPKVLKGHDDHVI-TCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 162

Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                    +   +ISG+ DR +K+W+ +   C+ TL 
Sbjct: 163 WSSQMR--DNI--IISGSTDRTLKVWNAETGECIHTLY 196

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 16/131 (12%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL---PVRAAK 64
             LT         +L      +L S   +  V +W+ +T Q +++ +  +     V   +
Sbjct: 313 HTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNTLE-----RFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
           F      ++T SDD  V +++  T E                V  +    T+      S 
Sbjct: 370 FNKNF--VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 427

Query: 120 D--MLIKLWNW 128
           +     KL   
Sbjct: 428 NGTEETKLLVL 438

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  143 bits (364), Expect = 5e-42
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 4/170 (2%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
            V + KF P   W+ + S D  + ++     +   +   H   +  VA       L+++S
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84

Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
           DD  +K+W+      C +  +GH++YV     NP  +N   S S D +V++W + +    
Sbjct: 85  DDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCL 142

Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
            TL  H   V+ V +   G    ++S + D L +IWD  +  C++TL   
Sbjct: 143 KTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDD 190

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  142 bits (360), Expect = 2e-41
 Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 2/189 (1%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  + + +K+ +     V    F P+ N IV+GS D  V +++  T +   +  AH
Sbjct: 89  LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           SD V  V  +     +++SS D L ++W+       + + +     V  +  +P +    
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYI 207

Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY-YHGGDKPYLISGADDRLVKIWDYQ 217
            +A+LD T+K+W         T  GH+    C+   +      +++SG++D LV IW+ Q
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267

Query: 218 NKTCVQTLE 226
            K  VQ L+
Sbjct: 268 TKEIVQKLQ 276

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  118 bits (298), Expect = 2e-32
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 8/182 (4%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF-EA 97
           V +W+ +T + +K+      PV A  F    + IV+ S D    +++  + +   +  + 
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN--PKDN 155
            +  V  V   P   ++L ++ D  +KLW++ K   C + + GH +    I  N      
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGG 249

Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISG--ADDRLVKI 213
               S S D  V +W L +      L+GH   V     +    +  + S    +D+ +K+
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP--TENIIASAALENDKTIKL 307

Query: 214 WD 215
           W 
Sbjct: 308 WK 309

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  118 bits (298), Expect = 3e-32
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 74  TGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA 133
           T S    V            +   H+  V  V   P   +L +SS D LIK+W       
Sbjct: 2   TQSKPTPV----KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-K 56

Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
            ++   GH   +  +  +  D+N   SAS D+T+K+W + S     TL+GH   V C ++
Sbjct: 57  FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115

Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
               +   ++SG+ D  V+IWD +   C++TL 
Sbjct: 116 NPQSN--LIVSGSFDESVRIWDVKTGKCLKTLP 146

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 93.7 bits (234), Expect = 5e-23
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFV 66
           + L A SD V     +     ++ S  Y+G   +W+  + Q +K+    D  PV   KF 
Sbjct: 143 KTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201

Query: 67  PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLI 123
           P   +I+  + D  + +++Y+  +   ++  H +   C+  + +     ++++ S+D L+
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261

Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL--DRTVKVWQL 172
            +WN +      Q  +GHT  V+    +P   N  ASA+L  D+T+K+W+ 
Sbjct: 262 YIWNLQ-TKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 310

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 63.6 bits (156), Expect = 3e-12
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRA---AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
           + +W++   + +K++               V    WIV+GS+D  V ++N  T E     
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275

Query: 96  EAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLWNWE 129
           + H+D V   A HPT+  + +++  +D  IKLW  +
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
           A+ S    VK       +  FTL GH K V+ V +   G+  +L S + D+L+KIW   +
Sbjct: 1   ATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYD 54

Query: 219 KTCVQTLE 226
               +T+ 
Sbjct: 55  GKFEKTIS 62

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  146 bits (370), Expect = 5e-42
 Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 22/207 (10%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+ +  + +++    D  V +   +P  + IV+ S D  + ++   T     +F  H
Sbjct: 174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP------ 152
            ++VR V  +     + + S+D  +++W       C+     H H V  I   P      
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSS 292

Query: 153 -------------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK 199
                        K      S S D+T+K+W + +     TL GH+  V  V ++ GG  
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK- 351

Query: 200 PYLISGADDRLVKIWDYQNKTCVQTLE 226
            +++S ADD+ +++WDY+NK C++TL 
Sbjct: 352 -FILSCADDKTLRVWDYKNKRCMKTLN 377

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  141 bits (358), Expect = 3e-40
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 4/168 (2%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
           PV    F P  + +V+ S+D  + V++Y T +   + + H+D V+ ++   +   L + S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169

Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
            DM IKLW+++  + C +   GH H V  + I P + +   SAS D+T+K+W++ +    
Sbjct: 170 ADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV 227

Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            T  GH + V  V     G    + S ++D+ V++W    K C   L 
Sbjct: 228 KTFTGHREWVRMVRPNQDGT--LIASCSNDQTVRVWVVATKECKAELR 273

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  131 bits (333), Expect = 1e-36
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 5/173 (2%)

Query: 54  EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF 113
           +V +L  +  +                   +     E+ ++   H   V  V  HP    
Sbjct: 64  KVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEK-YALSGHRSPVTRVIFHPVFSV 122

Query: 114 LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
           ++++S+D  IK+W++E     ++  +GHT  V  I  +       AS S D T+K+W   
Sbjct: 123 MVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ 180

Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                 T+ GH+  V+ V     GD  +++S + D+ +K+W+ Q   CV+T  
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFT 231

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  124 bits (313), Expect = 8e-34
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 24/199 (12%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W  +T   VK+F      VR  +       I + S+D  V V+   T E       H
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275

Query: 99  SDYVRCVAVHP--------------------TQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
              V C++  P                      PFLL+ S D  IK+W+      C    
Sbjct: 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTL 334

Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD 198
            GH ++V  ++ +        S + D+T++VW   +     TL  HE  V  +D++    
Sbjct: 335 VGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA- 392

Query: 199 KPYLISGADDRLVKIWDYQ 217
            PY+++G+ D+ VK+W+ +
Sbjct: 393 -PYVVTGSVDQTVKVWECR 410

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 24/122 (19%), Positives = 52/122 (42%)

Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
           +      + +   +        P++L+   +  + +W+  T   + +    D  VR   F
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346

Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
                +I++ +DD  + V++Y       +  AH  +V  +  H T P+++T S D  +K+
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406

Query: 126 WN 127
           W 
Sbjct: 407 WE 408

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  143 bits (361), Expect = 3e-39
 Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 6/217 (2%)

Query: 11   LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
                  +V CC L P   ++     +G + +     N+   S       VR  +F     
Sbjct: 957  DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016

Query: 71   WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
             +++ S+D  + V+N+ T   +   +AH + V+   +      LL+ S D  +K+WN   
Sbjct: 1017 TLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVIT 1074

Query: 131  AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
                ++ F  H   V+   I+  D   F+S S D+T K+W     SP   L+GH   V C
Sbjct: 1075 -GRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRC 1132

Query: 191  VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
              +   G    L +G D+  ++IW+  +   + +   
Sbjct: 1133 SAFSLDGI--LLATGDDNGEIRIWNVSDGQLLHSCAP 1167

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  137 bits (347), Expect = 2e-37
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 10/198 (5%)

Query: 30   MLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
            M+ ++     + +   +T Q     E     V      P   ++  G +D  + +     
Sbjct: 936  MVLAVDNIRGLQLIAGKTGQIDYLPEA---QVSCCCLSPHLEYVAFGDEDGAIKIIELPN 992

Query: 89   LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
               F S   H   VR +        L++SS+D +I++WNW+         + H   V   
Sbjct: 993  NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT--GDYVFLQAHQETVKDF 1050

Query: 149  VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
             +    ++   S S D TVKVW + +         H+  V               S + D
Sbjct: 1051 RLLQ--DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT--KFSSTSAD 1106

Query: 209  RLVKIWDYQNKTCVQTLE 226
            +  KIW +   + +  L+
Sbjct: 1107 KTAKIWSFDLLSPLHELK 1124

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  137 bits (346), Expect = 2e-37
 Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 19/240 (7%)

Query: 2   PLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
            ++   +  +   +D V           + +   +  + V+  ET + +   +  +  V 
Sbjct: 602 TIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL 661

Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP--TQPFLLTSSD 119
              F    ++I T S D +V +++  T +  H+++ HS+ V C           L T S+
Sbjct: 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
           D  +KLW+  +   C+    GHT+ V     +P D+   AS S D T+++W + SA+   
Sbjct: 722 DFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERK 779

Query: 180 TL-------------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           ++             E  E  V C  +   GD   +I  A ++++    + +    +   
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGD--KIIVAAKNKVLLFDIHTSGLLAEIHT 837

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  136 bits (344), Expect = 5e-37
 Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 17/232 (7%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP- 67
             + A  D V CC     + ++     +  V +W+  T + V +++     V    F   
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710

Query: 68  -RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
                + TGS+D  + +++ N  E  ++   H++ V      P    L + S D  ++LW
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770

Query: 127 NWE------------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
           +                 + +   E     V     +  D +    A+ ++ +      S
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIVAAKNKVLLFDIHTS 829

Query: 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                   GH   +   D+         +       V++W+  ++  V    
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDH--LAVIALSQYCVELWNIDSRLKVADCR 879

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  130 bits (329), Expect = 5e-35
 Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 10/198 (5%)

Query: 30   MLASLYNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
             +       V +++  T+  + +        ++   F P  +  V       V ++N ++
Sbjct: 812  KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 871

Query: 89   LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
              +      H  +V  V   P     LT+SDD  I++W  +K     +         + +
Sbjct: 872  RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK---VCKNSAIVLKQEIDV 928

Query: 149  VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD 208
            V    +     +    R +++    +          E  V+C       +  Y+  G +D
Sbjct: 929  VFQE-NETMVLAVDNIRGLQLIAGKTGQ---IDYLPEAQVSCCCLSPHLE--YVAFGDED 982

Query: 209  RLVKIWDYQNKTCVQTLE 226
              +KI +  N     +  
Sbjct: 983  GAIKIIELPNNRVFSSGV 1000

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  129 bits (326), Expect = 1e-34
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 17/227 (7%)

Query: 9    RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
                     V+          +++S  +  + VWN +T       +     V+  + +  
Sbjct: 997  SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQ- 1054

Query: 69   KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW 128
             + +++ S D  V V+N  T      F  H   V   A+        ++S D   K+W++
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114

Query: 129  EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW---------QLGSASPNF 179
            +   +     +GH   V     +  D    A+   +  +++W              S   
Sbjct: 1115 D-LLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172

Query: 180  TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                H   V  V +        L+S      +K W+       QT  
Sbjct: 1173 GTATHGGWVTDVCFSPDSK--TLVSA--GGYLKWWNVATGDSSQTFY 1215

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  127 bits (320), Expect = 7e-34
 Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 9/216 (4%)

Query: 7    IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
            +    T     ++ CD  P +   + +L    V +WN ++   V         V    F 
Sbjct: 832  LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891

Query: 67   PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
            P  +  +T SDD  + V+    + +  +          V     +  +L   +   ++L 
Sbjct: 892  PDGSSFLTASDDQTIRVWETKKVCK--NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949

Query: 127  NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
              +      Q+       V    ++P      A    D  +K+ +L +     +  GH+K
Sbjct: 950  AGK----TGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004

Query: 187  GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222
             V  + +   G    LIS ++D ++++W++Q    V
Sbjct: 1005 AVRHIQFTADGK--TLISSSEDSVIQVWNWQTGDYV 1038

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  126 bits (317), Expect = 2e-33
 Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
           ++A +        +   +   +   +   +        H+D V           + +   
Sbjct: 582 LQAKQEGDTGRLYLEWINKKTIKNLSRLVVR------PHTDAVYHACFSQDGQRIASCGA 635

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
           D  ++++  E         + H   V+    +  D++  A+ S D+ VK+W   +     
Sbjct: 636 DKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVH 693

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           T + H + VNC  + +  +   L +G++D  +K+WD   K C  T+ 
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF 740

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  124 bits (314), Expect = 5e-33
 Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 14/213 (6%)

Query: 11   LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
            L A  + VK   L   +  +L+  ++G V VWN  T +  + F      V +        
Sbjct: 1040 LQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098

Query: 71   WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE- 129
               + S D    +++++ L   H  + H+  VRC A       L T  D+  I++WN   
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158

Query: 130  -------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
                      + ++    H  +V  +  +P D+ T  SA     +K W + +   + T  
Sbjct: 1159 GQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSSQTFY 1215

Query: 183  GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
             +   +  +           ++  +  ++ I  
Sbjct: 1216 TNGTNLKKIHVSPDFR--TYVTVDNLGILYILQ 1246

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  118 bits (297), Expect = 9e-31
 Identities = 34/235 (14%), Positives = 84/235 (35%), Gaps = 21/235 (8%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL---------- 58
             +   ++ V  C   P +  + +   +G + +W+  +    KS  V             
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796

Query: 59  ---PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAVHPTQPFL 114
               V+   +    + I+  + + +V +F+ +T          H   ++     P     
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855

Query: 115 LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
           + +     ++LWN +          GH  +V  ++ +P D ++F +AS D+T++VW+   
Sbjct: 856 VIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKK 913

Query: 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
                      K    V +        +++  + R +++   +        E+ +
Sbjct: 914 VCK--NSAIVLKQEIDVVFQENET--MVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 96.8 bits (241), Expect = 2e-23
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 9    RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR 68
            R  T     V  C +        ++  +    +W+ +    +   +  +  VR + F   
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138

Query: 69   KNWIVTGSDDMQVCVFNYNTLERFHS---------FEAHSDYVRCVAVHPTQPFLLTSSD 119
               + TG D+ ++ ++N +  +  HS            H  +V  V   P    L+++  
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1198

Query: 120  DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
               +K WN        Q F  +   + +I ++P D  T+ +      + + Q+
Sbjct: 1199 Y--LKWWNVAT-GDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGILYILQV 1247

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  138 bits (351), Expect = 3e-39
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
            + S L +  + +W+  T +  +        V   ++  R   I+TGS D  V V++ NT
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNT 202

Query: 89  LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVM 146
            E  ++   H + V  +  +     ++T S D  I +W+         ++V  GH   V 
Sbjct: 203 GEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260

Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
            +     D+    SAS DRT+KVW   +     TL GH++G+ C+ Y        ++SG+
Sbjct: 261 VVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY----RDRLVVSGS 313

Query: 207 DDRLVKIWDYQNKTCVQTLE 226
            D  +++WD +   C++ LE
Sbjct: 314 SDNTIRLWDIECGACLRVLE 333

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  132 bits (335), Expect = 7e-37
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 13/160 (8%)

Query: 70  NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
             IV+G  D  + +++ NTLE       H+  V C+        ++T S D  +++W+  
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVN 201

Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEK 186
                      H   V+ +     +N    + S DR++ VW + S    +    L GH  
Sbjct: 202 TG-EMLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257

Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            VN VD+    D  Y++S + DR +K+W+      V+TL 
Sbjct: 258 AVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLN 293

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  129 bits (327), Expect = 1e-35
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 24/200 (12%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT---LERFHSF 95
           V VW+  T + + +       V   +F      +VT S D  + V++  +   +      
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVL 252

Query: 96  EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
             H   V  V        ++++S D  IK+WN        +   GH   +  +      +
Sbjct: 253 VGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQY---RD 306

Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
               S S D T+++W +   +    LEGHE+ V C+ +    D   ++SGA D  +K+WD
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWD 362

Query: 216 ---------YQNKTCVQTLE 226
                         C++TL 
Sbjct: 363 LVAALDPRAPAGTLCLRTLV 382

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  126 bits (318), Expect = 2e-34
 Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 28/202 (13%)

Query: 39  VHVWNHETNQNVKSFEVCDL-----PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93
           + VW+  +  ++    V  L      V    F     +IV+ S D  + V+N +T E   
Sbjct: 235 IAVWDMASPTDITLRRV--LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290

Query: 94  SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
           +   H   + C+        +++ S D  I+LW+ E   AC +V EGH   V  I     
Sbjct: 291 TLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--- 344

Query: 154 DNNTFASASLDRTVKVWQLGSASPNF---------TLEGHEKGVNCVDYYHGGDKPYLIS 204
           DN    S + D  +KVW L +A             TL  H   V  + +    D+  ++S
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF----DEFQIVS 400

Query: 205 GADDRLVKIWDYQNKTCVQTLE 226
            + D  + IWD+ N    Q   
Sbjct: 401 SSHDDTILIWDFLNDPAAQAEP 422

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  102 bits (257), Expect = 1e-25
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 95  FEAHSDYVRCV-AVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
               S+  + V  +      +++   D  IK+W+      C+++  GHT  V+ +     
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--- 181

Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
           D     + S D TV+VW + +     TL  H + V  + +    +   +++ + DR + +
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAV 237

Query: 214 WDYQNKTCV---QTLE 226
           WD  + T +   + L 
Sbjct: 238 WDMASPTDITLRRVLV 253

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 93.2 bits (232), Expect = 3e-22
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + VWN  T + V++       +   ++  R   +V+GS D  + +++          E H
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 335

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVI 150
            + VRC+        +++ + D  IK+W+              C +    H+  V ++  
Sbjct: 336 EELVRCIRFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393

Query: 151 NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
              D     S+S D T+ +W   +                 
Sbjct: 394 ---DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYT 431

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 126 WNWEKAWACQQVFEGHTHYVMQIV-INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
            NW       Q     +     +  +   D+    S   D T+K+W   +      L GH
Sbjct: 114 SNWRCGRHSLQRIHCRSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGH 172

Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
              V C+ Y    D+  +I+G+ D  V++WD      + TL 
Sbjct: 173 TGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLI 210

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  137 bits (348), Expect = 5e-39
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 12/231 (5%)

Query: 5   LDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVR 61
             + R  +    RV   + HPT P  +A     G + +W+++     +          + 
Sbjct: 63  YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT 122

Query: 62  AAKFVPRK-NWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
             KF     N +   S      + +++   ++ F   ++   +  CV V  ++  L T  
Sbjct: 123 GMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182

Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
               + L   +         + H   V     NP+ +   A++S+D TVK+W L +    
Sbjct: 183 STGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240

Query: 179 ---FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                   HEK VN   Y++  D   L++      ++++   + +    + 
Sbjct: 241 NSYIAEMPHEKPVNAA-YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  123 bits (310), Expect = 1e-33
 Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 28/237 (11%)

Query: 15  SDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETN--QNVKSFEVCDLPVRAAKFVPRKNW 71
            D +     +      L      G   + +   +  Q     +  D           +  
Sbjct: 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQM 177

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWE- 129
           + TG    ++ +   +        + H   V     +P   +L+ TSS D  +KLW+   
Sbjct: 178 LATGDSTGRLLLLGLDG-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236

Query: 130 -KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
            K          H   V     NP D+    +      ++V+     S    +  H    
Sbjct: 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH---- 292

Query: 189 NCVDYYH--------GGDKPYLISGA---------DDRLVKIWDYQNKTCVQTLESG 228
               + H              +++G          D R + I+D  +   V  L   
Sbjct: 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDP 349

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  108 bits (271), Expect = 5e-28
 Identities = 18/163 (11%), Positives = 46/163 (28%), Gaps = 7/163 (4%)

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLW 126
           +           +  + +  + +   +       V  +  HPT P  +   S    I LW
Sbjct: 42  QSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILW 101

Query: 127 NWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN--FTLEG 183
           +++ +         G    +  +  N  + N    +S+     +     +        + 
Sbjct: 102 DYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS 161

Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            +    CVD      +  L +G     + +        +   +
Sbjct: 162 WDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGH-EIFKEK 201

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 5   LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
           + +  K  +      C D+  +   +      G + +   + ++ +   ++    V  A+
Sbjct: 153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE-IFKEKLHKAKVTHAE 211

Query: 65  FVPRKNWIV-TGSDDMQVCVFNYNTLER---FHSFEAHSDYVRCVAVHPT-QPFLLTSSD 119
           F PR +W++ T S D  V +++   ++    + +   H   V     +PT    LLT+  
Sbjct: 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ 271

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFAS---------ASLDR 165
              I++++    W+       H H   Q +   K       +   +          +  R
Sbjct: 272 RNEIRVYSSY-DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKR 330

Query: 166 TVKVWQLGSASPNFTLEGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWD 215
           T+ ++   S      L        ++   +   GD   L SG     + IW+
Sbjct: 331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD--VLASGMGFN-ILIWN 379

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 24/186 (12%), Positives = 53/186 (28%), Gaps = 25/186 (13%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVC---DLPVRAAK 64
            K      +V   + +P   W++A+      V +W+    ++  S+      + PV AA 
Sbjct: 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY 257

Query: 65  FVPRK-NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYV---------------RCVAVH 108
           F P     ++T     ++ V++     +      H                     +   
Sbjct: 258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317

Query: 109 PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRT 166
                 L  +D   I +++                   +     +P   +  AS      
Sbjct: 318 RYPDDQLLLNDKRTIDIYDANSG-GLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFN 374

Query: 167 VKVWQL 172
           + +W  
Sbjct: 375 ILIWNR 380

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  135 bits (342), Expect = 1e-38
 Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 4/190 (2%)

Query: 37  GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
            H+ +W+ E  + +KS +   +      F P   ++ TG+   +V +F   + ++ +S +
Sbjct: 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
               ++  +A  P   +L + + D +I +++           EGH   +  +  +P D+ 
Sbjct: 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSP-DSQ 219

Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216
              +AS D  +K++ +  A+   TL GH   V  V +       + +S + D+ VK+WD 
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT--HFVSSSSDKSVKVWDV 277

Query: 217 QNKTCVQTLE 226
             +TCV T  
Sbjct: 278 GTRTCVHTFF 287

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  134 bits (340), Expect = 2e-38
 Identities = 39/224 (17%), Positives = 84/224 (37%), Gaps = 10/224 (4%)

Query: 9   RKLTARSDRVKCC----DLHPTEPWMLASLYNGHVHVWNHETNQN--VKSFEVCDLPVRA 62
           ++  A  D +       +       ++    +  V VW     +     S E   L V +
Sbjct: 26  KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVS 85

Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML 122
                      + S D  + +++    ++  S +A       +A  P   +L T +    
Sbjct: 86  VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 145

Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
           + ++  E     +   +    +++ I  +P D    AS ++D  + ++ + +     TLE
Sbjct: 146 VNIFGVESG-KKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLE 203

Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           GH   +  + +    D   L++ +DD  +KI+D Q+     TL 
Sbjct: 204 GHAMPIRSLTFSP--DSQLLVTASDDGYIKIYDVQHANLAGTLS 245

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  133 bits (338), Expect = 5e-38
 Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 4/177 (2%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V+++  E+ +   S +     + +  + P   ++ +G+ D  + +F+  T +  H+ E H
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           +  +R +   P    L+T+SDD  IK+++ + A        GH  +V+ +   P D+  F
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCP-DDTHF 263

Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
            S+S D++VKVW +G+ +   T   H+  V  V Y   G    ++S  DD+ + I+D
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS--KIVSVGDDQEIHIYD 318

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  126 bits (320), Expect = 2e-35
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA----VHPTQPFLLTSSDDMLIKLWN 127
               S +             F   +AH D +  VA           ++T S D L+K+W 
Sbjct: 5   HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK 64

Query: 128 WE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
           W  +    Q   EGH   V+ + I+       AS+SLD  +++W L +     +++    
Sbjct: 65  WRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV 123

Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
               + +       YL +G     V I+  ++     +L+
Sbjct: 124 DAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLD 161

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 98.7 bits (247), Expect = 8e-25
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           +++++  T + + + E   +P+R+  F P    +VT SDD  + +++        +   H
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           + +V  VA  P     ++SS D  +K+W+      C   F  H   V  +  N  + +  
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG-TRTCVHTFFDHQDQVWGVKYNG-NGSKI 305

Query: 159 ASASLDRTVKVWQL 172
            S   D+ + ++  
Sbjct: 306 VSVGDDQEIHIYDC 319

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 19/93 (20%), Positives = 37/93 (39%)

Query: 37  GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
           G++ +++ +      +       V    F P     V+ S D  V V++  T    H+F 
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
            H D V  V  +     +++  DD  I +++  
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  138 bits (350), Expect = 4e-38
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 11/228 (4%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
             LT ++  +   D  P+ P+ + S   +  V ++     +   +F      V + ++ P
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFE-------AHSDYVRCVAVHPTQPFLLTSSDD 120
             +   +   D  + ++N     +   FE       AHS  V  +   P    + ++S D
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             IK+WN       + +  G      Q+ I         S S +  +        S +  
Sbjct: 261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQV 319

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
             GH K +  +     G    L S   +  +  WD       +     
Sbjct: 320 RYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDV 365

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  121 bits (306), Expect = 5e-32
 Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 10/194 (5%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF--HSFE 96
           V V +    +    +         AK  P   +  +G     V +++          +  
Sbjct: 44  VPVGSLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100

Query: 97  AHSDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
             S  V+ ++       +    +  +    ++ ++          G    +  +   P  
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSR 159

Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
                S S D TV +++        T   H K V+ V Y   G      S   D  + ++
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLY 217

Query: 215 DYQNKTCVQTLESG 228
           +  + T     E  
Sbjct: 218 NGVDGTKTGVFEDD 231

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  116 bits (293), Expect = 3e-30
 Identities = 26/194 (13%), Positives = 58/194 (29%), Gaps = 11/194 (5%)

Query: 39  VHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA 97
           + +WN  T +  K+  V   +  +    +  K  +V+ S +  +   N            
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
           H+  +  ++       L ++  +  I  W+     + +   + H   +  I         
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS--KGD 380

Query: 158 FASASLDRTVKVWQL---GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
             + S D  +KV      G  S              +     GD   +   A  + + I+
Sbjct: 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IAVAACYKHIAIY 437

Query: 215 DYQNKTCVQTLESG 228
              +    +   S 
Sbjct: 438 S--HGKLTEVPISY 449

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  116 bits (292), Expect = 4e-30
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 12/191 (6%)

Query: 30  MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
           +  +    H+ +++H     V                  K ++  G  D +V V+  +  
Sbjct: 425 IAVAACYKHIAIYSHGKLTEVPI----SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480

Query: 90  ERFHS-FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVM 146
                    H   +  VA      FL+ +     +  ++       A    +  HT  V 
Sbjct: 481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 540

Query: 147 QIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS 204
            +  +P DN   A+ SLD +V VW +   S  P      H         +       ++S
Sbjct: 541 CVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVS 597

Query: 205 GADDRLVKIWD 215
              D  +K W+
Sbjct: 598 AGQDSNIKFWN 608

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  104 bits (261), Expect = 7e-26
 Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 14/204 (6%)

Query: 31  LASLYNGHVHVWNHETNQNVKSFEVCDL---PVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87
               ++ H+ V     +    S  V +               +  V       + +  Y+
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-HIAI--YS 438

Query: 88  TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
             +      +++    CVA+   + F+     D  + ++    A   +     H   +  
Sbjct: 439 HGKLTEVPISYN--SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 496

Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSASP---NFTLEGHEKGVNCVDYYHGGDKPYLIS 204
           +  +  +     +    R V  + + +        +   H   V CV +        L +
Sbjct: 497 VAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV--RLAT 553

Query: 205 GADDRLVKIWDYQNKTCVQTLESG 228
           G+ D  V +W+    +    +  G
Sbjct: 554 GSLDNSVIVWNMNKPSDHPIIIKG 577

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 87.6 bits (218), Expect = 4e-20
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKS-FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87
            +A    +  VHV+        +    V    + +  F     ++V      +V  ++  
Sbjct: 462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521

Query: 88  T---LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-AWACQQVFEGHTH 143
               L   +S+  H+  V CV+  P    L T S D  + +WN  K +     +   H  
Sbjct: 522 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 581

Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQL 172
             +  VI   +  T  SA  D  +K W +
Sbjct: 582 SSVNSVIWL-NETTIVSAGQDSNIKFWNV 609

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 84.9 bits (211), Expect = 3e-19
 Identities = 13/135 (9%), Positives = 38/135 (28%), Gaps = 13/135 (9%)

Query: 98  HSDYVRCVAVHP-TQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
                  +   P        + +    + + +        +++  H+H       +P   
Sbjct: 17  ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLT----DTEIYTEHSHQTTVAKTSP-SG 71

Query: 156 NTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD--DRLV 211
              AS  +   V++W     +     T+      V  + +        + +  +  +R  
Sbjct: 72  YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFG 129

Query: 212 KIWDYQNKTCVQTLE 226
            ++ +   T    L 
Sbjct: 130 HVFLFDTGTSNGNLT 144

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 10/98 (10%)

Query: 132 WACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
           +    +        + +   P  D   + + +   TV V    S +       H      
Sbjct: 10  FPS--LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVG---SLTDTEIYTEHSHQTTV 64

Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCV--QTLE 226
                 G   Y  SG     V+IWD    T +   T+ 
Sbjct: 65  AKTSPSGY--YCASGDVHGNVRIWDTTQTTHILKTTIP 100

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  134 bits (339), Expect = 6e-38
 Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 6/172 (3%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
           V    +   K  IV+ S D +V V++  T  + H+      +V   A  P+   +     
Sbjct: 67  VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126

Query: 120 DMLIKLWNWEKAW-----ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
           D    ++           A ++    HT+Y+         +    +AS D T  +W + S
Sbjct: 127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVES 185

Query: 175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                +  GH   V C+D          +SG  D+   +WD ++  CVQ  E
Sbjct: 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  130 bits (329), Expect = 2e-36
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 16/229 (6%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL------PVR 61
             +T     V  C   P+    +A    +    V+    ++N                + 
Sbjct: 100 HAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS 158

Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP--FLLTSSD 119
           A  F      I+T S D    +++  + +   SF  H   V C+ + P++     ++   
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP-- 177
           D    +W+      C Q FE H   V  +   P   + FAS S D T +++ L +     
Sbjct: 219 DKKAMVWDMRSG-QCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVA 276

Query: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            ++ E    G + VD+   G    L +G +D  + +WD    + V  L 
Sbjct: 277 IYSKESIIFGASSVDFSLSGR--LLFAGYNDYTINVWDVLKGSRVSILF 323

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  119 bits (302), Expect = 1e-32
 Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 7   IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
            K+ +   ++ +  C    ++  +L +  +G   +W+ E+ Q ++SF      V      
Sbjct: 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205

Query: 67  PRK--NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
           P +  N  V+G  D +  V++  + +   +FE H   V  V  +P+     + SDD   +
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265

Query: 125 LWNWEKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
           L++   A     ++   +       +  +        +   D T+ VW +   S    L 
Sbjct: 266 LYDLR-ADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILF 323

Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
           GHE  V+ +     G      SG+ D  +++W
Sbjct: 324 GHENRVSTLRVSPDGT--AFCSGSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  109 bits (275), Expect = 1e-28
 Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 11/165 (6%)

Query: 69  KNWIVTGSDDMQ-VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
           K   V      + V       ++   + + H + V C+     +  +++SS D  + +W+
Sbjct: 33  KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF------TL 181
                  +        +VM     P      A   LD    V+ L             ++
Sbjct: 93  SFTT-NKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV 150

Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             H   ++   + +      +++ + D    +WD ++   +Q+  
Sbjct: 151 AMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFH 193

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 91.1 bits (227), Expect = 8e-22
 Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 16/144 (11%)

Query: 94  SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN---WEKA----------WACQQVFEG 140
           + +   +     ++      L    ++   KL +    + A             ++  +G
Sbjct: 3   ATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKG 62

Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
           H + V+ +     D     S+S D  V VW   + +    +      V    Y   G   
Sbjct: 63  HGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-- 119

Query: 201 YLISGADDRLVKIWDYQNKTCVQT 224
            +  G  D    ++          
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENM 143

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  135 bits (341), Expect = 1e-36
 Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 11/225 (4%)

Query: 11  LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RK 69
           ++A    V+   ++                           +       V A        
Sbjct: 336 MSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNA 395

Query: 70  NWIVTGSDDMQVCVFNYNTLERF-----HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
           + IV+ S D  + ++     ++           HS +V  V +     F L+ S D  ++
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455

Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---NFTL 181
           LW+   A    + F GHT  V+ +  +  DN    SAS DRT+K+W          +   
Sbjct: 456 LWDLA-AGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGG 513

Query: 182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           EGH   V+CV +     +P ++S + D+ VK+W+  N     TL 
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  120 bits (302), Expect = 2e-31
 Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 11/193 (5%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF---HSF 95
           + +W+     + + F      V +  F      IV+ S D  + ++N     ++      
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513

Query: 96  EAHSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
           E H D+V CV   P   QP ++++S D  +K+WN       +    GHT YV  + ++P 
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSP- 571

Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
           D +  AS   D  V +W L      ++LE +   ++ + +       Y +  A +  +KI
Sbjct: 572 DGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNR---YWLCAATEHGIKI 627

Query: 214 WDYQNKTCVQTLE 226
           WD ++K+ V+ L+
Sbjct: 628 WDLESKSIVEDLK 640

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  118 bits (298), Expect = 6e-31
 Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 11/221 (4%)

Query: 15  SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL-----PVRAAKFVPR 68
           +D V           ++ S   +  + +W    +          L      V        
Sbjct: 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD 441

Query: 69  KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN- 127
             + ++GS D ++ +++         F  H+  V  VA       ++++S D  IKLWN 
Sbjct: 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501

Query: 128 -WEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
             E  +   +  EGH  +V  +  +P     T  SAS D+TVKVW L +     TL GH 
Sbjct: 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561

Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             V+ V     G      SG  D +V +WD      + +LE
Sbjct: 562 GYVSTVAVSPDGS--LCASGGKDGVVLLWDLAEGKKLYSLE 600

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  104 bits (262), Expect = 4e-26
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 10/193 (5%)

Query: 41  VWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD 100
           + N+            D P+ A      +  +          + N    E   +    S 
Sbjct: 280 LENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT-MENAQKGEIMPNIPQMSA 338

Query: 101 YVRCV--AVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           +   V  AV        T    +     N       +     HT  V  I     + +  
Sbjct: 339 FWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADII 398

Query: 159 ASASLDRTVKVWQLGSASPNF-----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
            SAS D+++ +W+L      +      L GH   V  V     G   + +SG+ D  +++
Sbjct: 399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGELRL 456

Query: 214 WDYQNKTCVQTLE 226
           WD       +   
Sbjct: 457 WDLAAGVSTRRFV 469

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 23/175 (13%)

Query: 60  VRAAKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
           V   +F P   +  IV+ S D  V V+N +  +   +   H+ YV  VAV P      + 
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579

Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP 177
             D ++ LW+  +        E ++  +  +  +P +     +A+ +  +K+W L S S 
Sbjct: 580 GKDGVVLLWDLAE-GKKLYSLEANS-VIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSI 635

Query: 178 NFTLEGHEKGVNCVDYYHGGDKP-----------------YLISGADDRLVKIWD 215
              L+   K         G                      L SG  D ++++W 
Sbjct: 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V VWN    +   +       V      P  +   +G  D  V +++    ++ +S EA+
Sbjct: 543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWN------------------WEKAWACQQVFEG 140
              +  +   P + +L  +++   IK+W+                   +   +     + 
Sbjct: 603 -SVIHALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660

Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
              Y   +  +  D +T  S   D  ++VW +G
Sbjct: 661 KVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  129 bits (327), Expect = 1e-36
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 15/233 (6%)

Query: 5   LDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL----- 58
           L ++  L   +  V        +P +L S   +  +  W    +       V        
Sbjct: 7   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
            V+         + ++ S D  + +++  T E +  F  H   V  V +      +++ S
Sbjct: 67  IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126

Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP-----KDNNTFASASLDRTVKVWQLG 173
            D  IK+W  +    C     GH  +V Q+ + P      D+ T  SA  D+ VK W L 
Sbjct: 127 RDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184

Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                    GH   +N +      D   + S   D  + +W+   K  + TL 
Sbjct: 185 QFQIEADFIGHNSNINTLTASP--DGTLIASAGKDGEIMLWNLAAKKAMYTLS 235

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  119 bits (302), Expect = 7e-33
 Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 13/193 (6%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+  T +  + F      V +     + + I++GS D  + V+     +   +   H
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGH 147

Query: 99  SDYVRCVAVHPTQ------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
           +D+V  V V P +        ++++ +D ++K WN  +    +  F GH   +  +  +P
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASP 206

Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
            D    ASA  D  + +W L +    +TL   +  V  + +       +L +      +K
Sbjct: 207 -DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRY--WLAAATATG-IK 261

Query: 213 IWDYQNKTCVQTL 225
           ++    +  V  L
Sbjct: 262 VFSLDPQYLVDDL 274

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  116 bits (294), Expect = 1e-31
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 88  TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWA----CQQVFEGHT 142
            L    + E H+ +V  +A    QP  LL++S D  +  W             + F+GH+
Sbjct: 6   VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65

Query: 143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
           H V    +   D     SAS D+T+++W + +        GH+  V  VD         +
Sbjct: 66  HIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK--KASMI 122

Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
           ISG+ D+ +K+W  + + C+ TL 
Sbjct: 123 ISGSRDKTIKVWTIKGQ-CLATLL 145

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 95.7 bits (239), Expect = 9e-24
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 20/170 (11%)

Query: 60  VRAAKFVPRKN------WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF 113
           V   + VP +        I++  +D  V  +N N  +    F  H+  +  +   P    
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210

Query: 114 LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
           + ++  D  I LWN   A             V  +  +P +    A+A+    +KV+ L 
Sbjct: 211 IASAGKDGEIMLWNLA-AKKAMYTLSAQ-DEVFSLAFSP-NRYWLAAAT-ATGIKVFSLD 266

Query: 174 SASPNFTL--------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
                  L        +  E     + +    D   L +G  D ++++W 
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSA--DGQTLFAGYTDNVIRVWQ 314

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 10/145 (6%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V  WN    Q    F   +  +      P    I +   D ++ ++N    +  ++  A 
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-------AWACQQVFEGHTHYVMQIVIN 151
            D V  +A  P + +L  ++    IK+++ +                +    + + +  +
Sbjct: 238 -DEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295

Query: 152 PKDNNTFASASLDRTVKVWQLGSAS 176
             D  T  +   D  ++VWQ+ +A+
Sbjct: 296 A-DGQTLFAGYTDNVIRVWQVMTAN 319

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  131 bits (331), Expect = 2e-36
 Identities = 6/201 (2%), Positives = 23/201 (11%), Gaps = 15/201 (7%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF------ 92
             +   +                  +     +                            
Sbjct: 90  AVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149

Query: 93  -HSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWE----KAWACQQVFEGHTHYVM 146
                        + +    +          L+     +         +        +  
Sbjct: 150 AFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYR 209

Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISG 205
                 +     A+        V +  + + +    E                       
Sbjct: 210 DPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQA--GADWT 267

Query: 206 ADDRLVKIWDYQNKTCVQTLE 226
           A                   E
Sbjct: 268 AAPAPAAGGWDTAAAPAPGWE 288

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  121 bits (305), Expect = 7e-33
 Identities = 8/234 (3%), Positives = 35/234 (14%), Gaps = 22/234 (9%)

Query: 9   RKLTARSDRVKCC----DLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAK 64
            ++   +D                            ++     +  +  ++    + A +
Sbjct: 19  IQMMLAADVHLGTKNCDFQM-----ERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIE 73

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
                          +  +              H+       +  +              
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133

Query: 125 LWNWE------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW-----QLG 173
                                      + I I   +    +   L   +           
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTI 193

Query: 174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLE 226
                + +          +      +    +        + +Y          E
Sbjct: 194 LPGHKWDVMVDLFFYRDPE-EAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGE 246

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  118 bits (298), Expect = 8e-32
 Identities = 11/164 (6%), Positives = 27/164 (16%), Gaps = 10/164 (6%)

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
                      ++  N  + +   +  +  +  +                   L   +  
Sbjct: 39  ERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYT 98

Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-------TLEGH 184
                +   HT       +     +      L       Q    S               
Sbjct: 99  -GAHAIAGRHTPGTFTNQLQT-SFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDS 156

Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                 +       K     G    L+     Q +  +      
Sbjct: 157 PMRYVDIGIPANN-KGKQSIGCLFWLLARMVLQMRGTILPGHKW 199

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 5/94 (5%), Positives = 17/94 (18%), Gaps = 4/94 (4%)

Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVD 192
                        +                  RT  ++ +        L+   + +  ++
Sbjct: 16  EQDIQMMLAADVHLGTKNCD--FQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIE 73

Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                D     +    +   +   Q         
Sbjct: 74  N--PQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  129 bits (327), Expect = 2e-36
 Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 23/236 (9%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL-----PVRA 62
           + L    +++   D       +LA+   +  + + + + +      +V D       +R+
Sbjct: 8   KSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-DVLDETAHKKAIRS 63

Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQPFLL 115
             + P  + +  GS D  V ++           ++     E H + V+ VA      +L 
Sbjct: 64  VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123

Query: 116 TSSDDMLIKLWNWE---KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
           T S D  + +W  +   + + C  V + H+  V  ++ +P      AS+S D TV++W+ 
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKD 182

Query: 173 --GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                     L GHE  V   D+        L SG+DD  V++W Y         E
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  120 bits (303), Expect = 7e-33
 Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 39  VHVWNHETNQNVKSFEVCDLP-------VRAAKFVPRKNWIVTGSDDMQVCVFNYNT--- 88
           V +W  E + +                 V+   +     ++ T S D  V ++  +    
Sbjct: 82  VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141

Query: 89  -LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVM 146
             E     + HS  V+ V  HP++  L +SS D  +++W      W C  V  GH   V 
Sbjct: 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW 201

Query: 147 QIVINPKDNNTF--ASASLDRTVKVWQLGSASPNFT---------LEGHEKGVNCVDYYH 195
               +      F   S S D TV+VW+      +            + H++ V  V +  
Sbjct: 202 SSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF 260

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
            G    + S   D ++ +++  +       +  
Sbjct: 261 NG---LIASVGADGVLAVYEEVDGEWKVFAKRA 290

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  109 bits (275), Expect = 8e-29
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 19/153 (12%)

Query: 88  TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN---WEKAWACQQVFEGHTHY 144
           ++    S + + + +           L T S D  IKL +    +           H   
Sbjct: 3   SINLIKSLKLYKEKIWSFDFSQGI--LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60

Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-------TLEGHEKGVNCVDYYHGG 197
           +  +   P   +  A+ S D TV +W    ++           +EGHE  V  V + + G
Sbjct: 61  IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119

Query: 198 DKPYLISGADDRLVKIWD----YQNKTCVQTLE 226
              YL + + D+ V IW+     +   C+  L+
Sbjct: 120 Y--YLATCSRDKSVWIWETDESGEEYECISVLQ 150

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  107 bits (270), Expect = 4e-28
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 18/174 (10%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHP--TQPFLL 115
           V+   + P +  + + S D  V ++       E       H   V             L 
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215

Query: 116 TSSDDMLIKLWNWEKA-------WACQQV-FEGHTHYVMQIVINPKDNNTFASASLDRTV 167
           + SDD  +++W +          W C+ +  + H   V  +      N   AS   D  +
Sbjct: 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVL 273

Query: 168 KVWQLGS----ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
            V++             L      +N V +     K  L +G DD +V  W  +
Sbjct: 274 AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 20/186 (10%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKF 65
             L   S  VK    HP+E  +LAS  Y+  V +W    +  + V      +  V ++ F
Sbjct: 147 SVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205

Query: 66  VP--RKNWIVTGSDDMQVCVFNYNTLERFHS---------FEAHSDYVRCVAVHPTQPFL 114
                   + +GSDD  V V+ Y   +              + H   V  VA       +
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LI 264

Query: 115 LTSSDDMLIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTF-ASASLDRTVKVW 170
            +   D ++ ++     E     ++      + +  +     +  T  A+   D  V  W
Sbjct: 265 ASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324

Query: 171 QLGSAS 176
            L  A+
Sbjct: 325 SLEKAA 330

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  129 bits (328), Expect = 2e-36
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 7/170 (4%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
           + A  +      +++ S D ++ +++  T  + H+    S +V   A  P+  ++     
Sbjct: 58  IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117

Query: 120 DMLIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
           D +  ++N    E      +   GHT Y+         +N   ++S D T  +W + +  
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQ 175

Query: 177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
              T  GH   V  +      D    +SGA D   K+WD +   C QT  
Sbjct: 176 QTTTFTGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFT 223

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  128 bits (323), Expect = 1e-35
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 17/227 (7%)

Query: 9   RKLTARSDRVKCCDLHP--TEPWMLAS-LYNGHVHVWNHETNQN----VKSFEVCDLPVR 61
             +  RS  V  C   P       +A    +    ++N +T +      +        + 
Sbjct: 91  HAIPLRSSWVMTCAYAPSGN---YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147

Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
             +F+   N IVT S D    +++  T ++  +F  H+  V  +++ P     ++ + D 
Sbjct: 148 CCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206

Query: 122 LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP--NF 179
             KLW+  +   C+Q F GH   +  I   P + N FA+ S D T +++ L +      +
Sbjct: 207 SAKLWDVREG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           + +    G+  V +   G    L++G DD    +WD         L 
Sbjct: 265 SHDNIICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKADRAGVLA 309

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  118 bits (299), Expect = 3e-32
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
             +W+ ET Q   +F      V +    P     V+G+ D    +++        +F  H
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH--YVMQIVINPKDNN 156
              +  +   P      T SDD   +L++   A      +        +  +  +     
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSK-SGR 283

Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
              +   D    VW    A     L GH+  V+C+     G    + +G+ D  +KIW+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM--AVATGSWDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  109 bits (275), Expect = 1e-28
 Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 14/172 (8%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS 118
             R A      + I    D +         +    +   H   +  +        LL++S
Sbjct: 20  DARKACADATLSQITNNIDPV-----GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74

Query: 119 DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
            D  + +W+              + +VM     P   N  A   LD    ++ L +   N
Sbjct: 75  QDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGN 132

Query: 179 F----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                 L GH   ++C  +        +++ + D    +WD +      T  
Sbjct: 133 VRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  128 bits (325), Expect = 3e-36
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 14/190 (7%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V ++       + +       V +  F      +++GS D    V  +      ++ +AH
Sbjct: 86  VPLFATSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKV--WKEGSLVYNLQAH 141

Query: 99  SDYVRCV-AVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNN 156
           +  V     V  ++   LT+S D  IKLW  +K     + F G H   V  + +    + 
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVD--DG 196

Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY 216
            F S S D  +K+  + +     T EGHE  V C+     GD   ++S  +DR V+IW  
Sbjct: 197 HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSK 253

Query: 217 QNKTCVQTLE 226
           +N +  Q + 
Sbjct: 254 ENGSLKQVIT 263

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  117 bits (296), Expect = 6e-32
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 15/171 (8%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
           VR    V   + + + S D  V +++ +             ++  V     +  LL    
Sbjct: 21  VRDVVAVD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK 79

Query: 120 DMLIK---LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
           D +I    L+             GH   V  +           S S D+T KVW+ GS  
Sbjct: 80  DTMINGVPLFATSGE-DPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWKEGSLV 135

Query: 177 PNFTLEGHEKGVNCVDYY-HGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             + L+ H   V          +K   ++ + D+ +K+W   N   ++T  
Sbjct: 136 --YNLQAHNASVWDAKVVSFSENK--FLTASADKTIKLWQ--NDKVIKTFS 180

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  114 bits (288), Expect = 7e-31
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 17/193 (8%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFV-PRKNWIVTGSDDMQVCVFNYNTLERFHSFE- 96
             VW       V + +  +  V  AK V   +N  +T S D  + ++  + +    +F  
Sbjct: 126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI--KTFSG 181

Query: 97  AHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
            H+D VR +AV        ++ S+D LIKL +        + +EGH  +V  I + P  N
Sbjct: 182 IHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLP--N 236

Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
               S   DRTV++W   + S    +      +  VD    GD   +I G+ D LV+I+ 
Sbjct: 237 GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD---IIVGSSDNLVRIFS 293

Query: 216 YQNKTCV--QTLE 226
            +         ++
Sbjct: 294 QEKSRWASEDEIK 306

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  108 bits (272), Expect = 2e-28
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
            + + H   VR V        + + S D  ++LW+ +  W    V      ++  +  + 
Sbjct: 12  ATLKGHDQDVRDVVAVDDS-KVASVSRDGTVRLWSKDDQW-LGTVVYTGQGFLNSVCYDS 69

Query: 153 KDNNTFASASLDRTVK---VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
            +         D  +    ++      P +TL GH+  V  + +  G     +ISG+ D+
Sbjct: 70  -EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG----VVISGSWDK 124

Query: 210 LVKIWDYQNKTCVQTLE 226
             K+W     + V  L+
Sbjct: 125 TAKVWK--EGSLVYNLQ 139

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +      +GH   V  +V     ++  AS S D TV++W          +   +  +N V
Sbjct: 8   YQLSATLKGHDQDVRDVVAVD--DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV 65

Query: 192 DYYHGGDKPYLISGADDRLVK---IWDYQNKTCVQTLE 226
            Y    +K  L+ G  D ++    ++    +  + TL 
Sbjct: 66  CYDS--EKELLLFGGKDTMINGVPLFATSGEDPLYTLI 101

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + + +  T   ++++E  +  V   K +P    IV+  +D  V +++             
Sbjct: 207 IKLVDMHTGDVLRTYEGHESFVYCIKLLP-NGDIVSCGEDRTVRIWSKENGSLKQVITLP 265

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYV 145
           +  +  V        ++  S D L+++++ EK+ WA +   +G     
Sbjct: 266 AISIWSVDCMSNG-DIIVGSSDNLVRIFSQEKSRWASEDEIKGELRSG 312

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  129 bits (326), Expect = 1e-35
 Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 26/222 (11%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
            L     +GH  ++N       K  +  D          +    + G+ +  + V + N 
Sbjct: 70  HLYKARLDGHDFLFNTIIRDGSKMLKRADY-TAVDTAKLQMRRFILGTTEGDIKVLDSNF 128

Query: 89  LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
             +    +AH   +  +   P+   L++SS DM +K+W+ +   +  +   GH   V  I
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIGHRATVTDI 187

Query: 149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE---KGVNCVDYYHGGDKP----- 200
            I         SASLD T+++W+ G+ +   T    E    GVN +  + G D+      
Sbjct: 188 AIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246

Query: 201 --------------YLISGADDRLVKIWDYQNKTCVQTLESG 228
                         Y+I+G    ++ + +  +K     L S 
Sbjct: 247 TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  128 bits (323), Expect = 3e-35
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 5/167 (2%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
            +   F    + +     D    +FN    +        +DY             +  + 
Sbjct: 59  GKGNTFEKVGSHLYKARLDGHDFLFNTIIRD-GSKMLKRADYTAVDTAKLQMRRFILGTT 117

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
           +  IK+ +       +++ + H   + ++   P       S+S D  +K+W +   S   
Sbjct: 118 EGDIKVLDSNF-NLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPR 175

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           TL GH   V  +     G    ++S + D  +++W+    T + T  
Sbjct: 176 TLIGHRATVTDIAIIDRGR--NVLSASLDGTIRLWECGTGTTIHTFN 220

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  121 bits (305), Expect = 2e-32
 Identities = 23/214 (10%), Positives = 58/214 (27%), Gaps = 29/214 (13%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT------LERF 92
           + +W+ +   N ++       V     + R   +++ S D  + ++   T        R 
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222

Query: 93  ------------------HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC 134
                                E  +     +       +++      +I + N       
Sbjct: 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282

Query: 135 QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVD 192
            Q+    T     + ++  + N   +   +  +  W L          L      +N V 
Sbjct: 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342

Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           +  G      +S   D  +K+    +    +   
Sbjct: 343 FAAGA---LFVSSGFDTSIKLDIISDPESERPAI 373

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  118 bits (297), Expect = 2e-31
 Identities = 32/214 (14%), Positives = 70/214 (32%), Gaps = 28/214 (13%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + V +   N   +  +     +   KF P    +++ S DMQ+ +++        +   H
Sbjct: 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWN------------------WEKAWA-----CQ 135
              V  +A+      +L++S D  I+LW                      + A      +
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYY 194
           Q+ E  T     +           +  +   + V  + S               N +   
Sbjct: 241 QLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT-V 298

Query: 195 HGGDKPYLISGADDRLVKIWDYQNKTCV--QTLE 226
            G +  Y+ +G ++ ++  WD ++  C   + L 
Sbjct: 299 DGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI 332

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 98.1 bits (245), Expect = 3e-24
 Identities = 15/173 (8%), Positives = 46/173 (26%), Gaps = 15/173 (8%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAV-HPTQPFLLT 116
                +F     +++ G     + V N  + E+        +     + V      ++  
Sbjct: 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308

Query: 117 SSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
             ++ ++  W+         +        +  +         F S+  D ++K+  +   
Sbjct: 309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA--GALFVSSGFDTSIKLDIISDP 366

Query: 176 SPNFTLEGHEKGVNCVDYYHGG--------DKP--YLISGADDRLVKIWDYQN 218
                    E     V              D+    ++    +    +++  N
Sbjct: 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 12/137 (8%)

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLW-----NWEKAWACQQVFEGHTHYV---MQIV 149
            +  +    +      +L  +D+   + +     N  +    + V  G++  V       
Sbjct: 4   MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNT 63

Query: 150 INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
                 +    A LD    ++       +  L                     I G  + 
Sbjct: 64  FEK-VGSHLYKARLDGHDFLFNTIIRDGSKML-KRADYTAVDTAKLQMR--RFILGTTEG 119

Query: 210 LVKIWDYQNKTCVQTLE 226
            +K+ D       +  +
Sbjct: 120 DIKVLDSNFNLQREIDQ 136

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  129 bits (326), Expect = 2e-35
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 31/244 (12%)

Query: 7   IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV 66
            +  L      V  C L   + +++    +  + V++    + +      D  V A K+ 
Sbjct: 113 QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171

Query: 67  PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIK 124
                +V+GS D  V V++       H FE H+  VRC+ +  +    +++T S D  + 
Sbjct: 172 H-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230

Query: 125 LWNWEK----------------------AWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162
           +W   K                            V  GH   V    ++    N   S S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSG-HGNIVVSGS 287

Query: 163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222
            D T+ VW +      + L GH   +    Y H       IS + D  ++IWD +N   +
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK--RCISASMDTTIRIWDLENGELM 345

Query: 223 QTLE 226
            TL+
Sbjct: 346 YTLQ 349

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  120 bits (302), Expect = 6e-32
 Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 33/215 (15%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAK--FVPRKNWIVTGSDDMQVCVFNYNT-------- 88
           V VW+ +       FE  +  VR           +IVTGS D  + V+            
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244

Query: 89  ---------------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA 133
                                   H   VR V+ H     +++ S D  + +W+  +   
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI--VVSGSYDNTLIVWDVAQM-K 301

Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
           C  +  GHT  +   + +  +     SAS+D T+++W L +    +TL+GH   V  +  
Sbjct: 302 CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360

Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                  +L+S A D  ++ WD  + +   +    
Sbjct: 361 ----SDKFLVSAAADGSIRGWDANDYSRKFSYHHT 391

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  118 bits (298), Expect = 2e-31
 Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 5/185 (2%)

Query: 42  WNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV-FNYNTLERFHSFEAHSD 100
            N  + +   S  +             +  +    +   +   +N   + +  +   H  
Sbjct: 63  ENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMT 122

Query: 101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160
            V          +++T +DD +I++++            GH   V  +           S
Sbjct: 123 SVITCLQFEDN-YVITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKYA--HGGILVS 178

Query: 161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT 220
            S DRTV+VW +         EGH   V C+D     +  Y+++G+ D  + +W    ++
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238

Query: 221 CVQTL 225
            V   
Sbjct: 239 SVPDH 243

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  112 bits (282), Expect = 4e-29
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 8/170 (4%)

Query: 60  VRAAKFVPRKNWIVTGSDD--MQVCV-FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLT 116
           + +       N I+  S     ++ +  N+ + + F+S                +  L  
Sbjct: 36  INSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSF 95

Query: 117 SSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
             +  ++K W   K    +    GH   V+   +   ++N   + + D+ ++V+   +  
Sbjct: 96  LENIFILKNWYNPKFVPQRTTLRGHMTSVIT-CLQF-EDNYVITGADDKMIRVYDSINKK 153

Query: 177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
               L GH+ GV  + Y HGG    L+SG+ DR V++WD +   C    E
Sbjct: 154 FLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFE 200

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  110 bits (276), Expect = 3e-28
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 67  PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
              N +V+GS D  + V++   ++  +    H+D +        +   +++S D  I++W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337

Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
           + E         +GHT  V  + ++ K      SA+ D +++ W     S       H  
Sbjct: 338 DLE-NGELMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSRK-FSYHHTN 392

Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                 +Y   +   L+SG++++   I++ ++   V      
Sbjct: 393 LSAITTFYVSDN--ILVSGSENQ-FNIYNLRSGKLVHANILK 431

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  102 bits (256), Expect = 2e-25
 Identities = 23/182 (12%), Positives = 67/182 (36%), Gaps = 14/182 (7%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + VW+    + +         + +  +   +   ++ S D  + +++    E  ++ + H
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           +  V  + +     FL++++ D  I+ W+       ++    HT+           +N  
Sbjct: 352 TALVGLLRLSDK--FLVSAAADGSIRGWDAND--YSRKFSYHHTNLSAITTFYV-SDNIL 406

Query: 159 ASASLDRTVKVWQLGSASP-NFTLEGHEKGVNCVDYYHGGDKPYLISGADD---RLVKIW 214
            S S +    ++ L S    +  +      +  V++        L++  +      ++I 
Sbjct: 407 VSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF----KGKTLVAAVEKDGQSFLEIL 461

Query: 215 DY 216
           D+
Sbjct: 462 DF 463

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 7/140 (5%)

Query: 90  ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQ 147
            +  ++    D +  + V      ++  S  +  KL   E                    
Sbjct: 24  LKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYP 83

Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSASP-NFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
            +    D    +       +K W      P   TL GH   V     +      Y+I+GA
Sbjct: 84  KLSQQ-DRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDN---YVITGA 139

Query: 207 DDRLVKIWDYQNKTCVQTLE 226
           DD++++++D  NK  +  L 
Sbjct: 140 DDKMIRVYDSINKKFLLQLS 159

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  130 bits (330), Expect = 3e-35
 Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 17/217 (7%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVC---DLPVRAAK 64
            +++  S R+  C L  + P    +   +G V  +     +   S          VR  +
Sbjct: 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213

Query: 65  FVP-RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDD 120
           F P    +++T   D ++  F+  + E     E   + V+      +        T   D
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD 273

Query: 121 MLIKLWNWEKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
             I++W+      C Q +          Q+ +    N    S SLD T+  ++LG     
Sbjct: 274 ATIRVWDVT-TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL 332

Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
            T+ GH KG+  +          LISG+ D  +  W 
Sbjct: 333 KTISGHNKGITALTVNP------LISGSYDGRIMEWS 363

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  130 bits (329), Expect = 3e-35
 Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 11/197 (5%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNT---LERFHS 94
               + ++  ++         + A      R    +T  DD  V  +            +
Sbjct: 142 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 201

Query: 95  FEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK 153
                 +VR V   P +  F++T   D  I  ++ +      +  E     V   +    
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALS 260

Query: 154 --DNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
             D+  FA+   D T++VW +        +TL+  + G   V     G+   +IS + D 
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDG 319

Query: 210 LVKIWDYQNKTCVQTLE 226
            +  ++  +   ++T+ 
Sbjct: 320 TLNFYELGHDEVLKTIS 336

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  111 bits (281), Expect = 1e-28
 Identities = 28/216 (12%), Positives = 71/216 (32%), Gaps = 26/216 (12%)

Query: 32  ASLYNGHVHVWNHETNQNVKSFEVCDL------PVRAAKFVPRKN--WIVTGSDDMQVCV 83
               +  V   +   ++      V          V   KF P K   ++ +G +  +V V
Sbjct: 36  PCGKSAFVRCLDDGDSKVP---PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92

Query: 84  FNYNTLERFHS--------FEAHSDYVRCVAVHPTQPFLLT--SSDDMLIKLWNWEKAWA 133
           + +   +  +S        F+  +  +  ++       L       D      +W+ +  
Sbjct: 93  WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGN 151

Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS---ASPNFTLEGHEKGVNC 190
                 GH+  +    +         +   D +V  +Q      ++ + T       V  
Sbjct: 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211

Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           V++     + ++I+   DR +  +D ++   ++ +E
Sbjct: 212 VEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIE 246

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  106 bits (268), Expect = 6e-27
 Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 16/197 (8%)

Query: 30  MLASLYNGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
                 +  + +    T   +KS  +       +         +  G+      + +   
Sbjct: 420 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479

Query: 89  LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
                           +++ P++ ++        I L++ +        +   T  +  I
Sbjct: 480 SFDL--KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 537

Query: 149 VINP---------KDNNTFASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYYHGGD 198
              P          + +  A+ SLD  + ++ +         L  H+ GVN + +     
Sbjct: 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 597

Query: 199 KPYLISGADDRLVKIWD 215
              L+S   D  +K W+
Sbjct: 598 ---LVSSGADACIKRWN 611

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  106 bits (266), Expect = 1e-26
 Identities = 24/209 (11%), Positives = 65/209 (31%), Gaps = 24/209 (11%)

Query: 30  MLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
             +S+ ++  + V     ++            + A         V  +DD  + +    T
Sbjct: 385 EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDD-DLLILQSFT 436

Query: 89  LERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
            +   S   +S      ++ +     L   +   + KL + E +     +          
Sbjct: 437 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS---FDLKTPLRAKPSY 493

Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFT-LEGHEKGVNCVDY--------YHGGD 198
           I I+P      A+  +   + ++ L S     +        +N + +            +
Sbjct: 494 ISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552

Query: 199 KPYLISGADDRLVKIWDYQN-KTCVQTLE 226
           +  + +G+ D  + I+  +     ++ L 
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPMKIIKALN 581

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 22/186 (11%)

Query: 60  VRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLER--FHSFEAH-SDYVRCVAVHPTQ--PF 113
                + P  N I         V   +    +      F  H S  V  V   P +   +
Sbjct: 21  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 80

Query: 114 LLTSSDDMLIKLWNWE-------KAWACQQVFEGHTHYVMQIVINPKDNNTF--ASASLD 164
           L +  +   + +W W             +  F+     +  I  +  +           D
Sbjct: 81  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRD 139

Query: 165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWD---YQNKT 220
                    S +    + GH + +N         +P    +  DD  V  +    ++   
Sbjct: 140 NFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSA 197

Query: 221 CVQTLE 226
             +T  
Sbjct: 198 SDRTHH 203

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 21/221 (9%), Positives = 63/221 (28%), Gaps = 25/221 (11%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           + ++  +  +    ++P     L S  Y+G +  W+  +     S       + +     
Sbjct: 333 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSN-----LIVSLDNSK 382

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
            +    + S D  + V      E            +  + +      + ++DD  + +  
Sbjct: 383 AQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDD-LLILQ 433

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
                  + V        + +  N          +  +  K+  L  +            
Sbjct: 434 SFTGDIIKSVRLNSPGSAVSLSQNY-VAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAK 490

Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
            + +         Y+ +G     + ++D Q++    +  + 
Sbjct: 491 PSYISISPSET--YIAAGDVMGKILLYDLQSREVKTSRWAF 529

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 81.9 bits (203), Expect = 3e-18
 Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS-FEA 97
             + + E + ++K               P + +I  G    ++ +++  + E   S +  
Sbjct: 472 FKLSDLEVSFDLK--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 529

Query: 98  HSDYVRCVAVHPTQ----------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
            +  +  ++  P +            + T S D  I +++ ++     +    H   V  
Sbjct: 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 589

Query: 148 IVINPKDNNTFASASLDRTVKVWQL 172
           ++      +T  S+  D  +K W +
Sbjct: 590 LLWET--PSTLVSSGADACIKRWNV 612

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 12/142 (8%)

Query: 97  AHSDYVRCVAVHPTQPFLLTSS-DDMLIKLW-NWEKAWACQQVFEGH-THYVMQIVINP- 152
              ++   ++  PT   +         ++   + +        F GH +  V  +  +P 
Sbjct: 16  TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75

Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLE--------GHEKGVNCVDYYHGGDKPYLIS 204
           K +    S      V VW       + ++E             ++ + +   G +  ++ 
Sbjct: 76  KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135

Query: 205 GADDRLVKIWDYQNKTCVQTLE 226
              D       + +   +  + 
Sbjct: 136 EGRDNFGVFISWDSGNSLGEVS 157

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  127 bits (321), Expect = 7e-35
 Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 13/230 (5%)

Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRA 62
            I +K      R      HPT P  +A     G + +WN                  +  
Sbjct: 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITG 169

Query: 63  AKFVPRK-NWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
            KF P   N     S +    + ++    L  F S +  + +   + V  +   ++T  +
Sbjct: 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN 229

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
              + L N +           H   V  + +NP  +   A+AS+D+TVK+W L       
Sbjct: 230 VGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287

Query: 180 TL---EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           +      H   VN   +   G    L++      ++++      C   L 
Sbjct: 288 SFLYSLPHRHPVNAACFSPDGA--RLLTTDQKSEIRVYSASQWDCPLGLI 335

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  115 bits (291), Expect = 1e-30
 Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 24/236 (10%)

Query: 15  SDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNW 71
              +     +P       +    G   + + + N      S +  ++   +         
Sbjct: 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWE- 129
           +VTG +   V + N +  +   +   H   V  VA++P    FL T+S D  +K+W+   
Sbjct: 224 VVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282

Query: 130 -KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV 188
            +  A       H H V     +P D     +      ++V+          L  H    
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341

Query: 189 N------CVDYYHGGD----------KPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                     ++   +               +  + R + ++D  +   +  L   
Sbjct: 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  106 bits (267), Expect = 4e-27
 Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 12/166 (7%)

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLI 123
             P     +  S    +     ++                +A HPT P  +   S    I
Sbjct: 90  SWPSVQQGLQQSFLHTL-----DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDI 144

Query: 124 KLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFT 180
            LWN+  K         G    +  +  NP + N F ++S++ T ++            +
Sbjct: 145 MLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS 204

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            +        +D         +++G +   V + +   K  +  L 
Sbjct: 205 SDTINIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGK-ELWNLR 247

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 99.8 bits (249), Expect = 1e-24
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 27/217 (12%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYN 87
           M+ +    G+V + N +  + + +  +    V      P    ++ T S D  V +++  
Sbjct: 223 MVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281

Query: 88  TLE---RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
            +     F     H   V      P    LLT+     I++++    W C      H H 
Sbjct: 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS-QWDCPLGLIPHPHR 340

Query: 145 VMQIVINPK----------------DNNTFASASLD-RTVKVWQLGSASPNFTL-EGHEK 186
             Q +   K                D N  +    + RT+ V+   S      L +    
Sbjct: 341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS 400

Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
           G++ ++ ++      L S      + IW  Q     +
Sbjct: 401 GISSLNEFNPMGD-TLASAMGYH-ILIWSQQEARTRK 435

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 74.7 bits (184), Expect = 8e-16
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASLYNGH-VHVWNHETNQNVKSFEVC---DLPVRAAK 64
             L     +V    L+P   W LA+      V +W+    +   SF        PV AA 
Sbjct: 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDY-----------------VRCVAV 107
           F P    ++T     ++ V++ +  +       H                    +  V  
Sbjct: 304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363

Query: 108 HPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIV-INPKDNNTFASASLDR 165
           +P   F   +  +   I +++        Q+++  +  +  +   NP   +T ASA    
Sbjct: 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GY 421

Query: 166 TVKVWQL 172
            + +W  
Sbjct: 422 HILIWSQ 428

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  125 bits (316), Expect = 9e-35
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF-HSFEA 97
           + +W+  T    + F      V +  F      IV+GS D  + ++N   + ++    E+
Sbjct: 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES 169

Query: 98  HSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
           HS++V CV   P  + P +++   D L+K+WN       +    GHT Y+  + ++P D 
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSP-DG 227

Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
           +  AS   D    +W L      +TL+G +  +N + +       Y +  A    +KIWD
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNR---YWLCAATGPSIKIWD 283

Query: 216 YQNKTCVQTLE 226
            + K  V  L+
Sbjct: 284 LEGKIIVDELK 294

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  120 bits (304), Expect = 7e-33
 Identities = 49/228 (21%), Positives = 80/228 (35%), Gaps = 11/228 (4%)

Query: 7   IKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDL-----PV 60
           ++  L   +  V      P  P M+ S   +  + +W    ++         L      V
Sbjct: 30  LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
                     + ++GS D  + +++  T      F  H+  V  VA       +++ S D
Sbjct: 90  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD--NNTFASASLDRTVKVWQLGSASPN 178
             IKLWN           E H+ +V  +  +P +  N    S   D+ VKVW L +    
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP-NSSNPIIVSCGWDKLVKVWNLANCKLK 208

Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
               GH   +N V     G      SG  D    +WD      + TL+
Sbjct: 209 TNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKHLYTLD 254

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  120 bits (303), Expect = 8e-33
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 13/165 (7%)

Query: 70  NWIVTGSDDMQVCVFNYN----TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIK 124
           +   +G D     ++  +     +    + + H+ +V  +A  P  P  +L++S D  I 
Sbjct: 5   HHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTII 64

Query: 125 LWNWE----KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
           +W            Q+   GH+H+V  +VI+  D     S S D T+++W L + +    
Sbjct: 65  MWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRR 123

Query: 181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             GH K V  V +    D   ++SG+ D+ +K+W+     C  T+
Sbjct: 124 FVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLG-VCKYTV 165

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  101 bits (254), Expect = 9e-26
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 114 LLTSSDDMLIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
             +  D     L+      +    +   +GH  +V QI   P+  +   SAS D+T+ +W
Sbjct: 7   HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 66

Query: 171 QLGSASPNF-----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
           +L     N+      L GH   V+ V     G   + +SG+ D  +++WD    T  +  
Sbjct: 67  KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLRLWDLTTGTTTRRF 124

Query: 226 E 226
            
Sbjct: 125 V 125

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 99.9 bits (250), Expect = 3e-25
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 60  VRAAKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
           V   +F P      IV+   D  V V+N    +   +   H+ Y+  V V P      + 
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233

Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW------- 170
             D    LW+  +        +G    +  +  +P +     +A+   ++K+W       
Sbjct: 234 GKDGQAMLWDLNE-GKHLYTLDGG-DIINALCFSP-NRYWLCAAT-GPSIKIWDLEGKII 289

Query: 171 --QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
             +L     + + +        + +   G    L +G  D LV++W 
Sbjct: 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQ--TLFAGYTDNLVRVWQ 334

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 77.5 bits (192), Expect = 4e-17
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V VWN    +   +       +      P  +   +G  D Q  +++ N  +  ++ +  
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVI 150
            D +  +   P + +L  ++    IK+W+ E        K        +        +  
Sbjct: 257 -DIINALCFSPNRYWLCAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314

Query: 151 NPKDNNTFASASLDRTVKVWQLGS 174
           +  D  T  +   D  V+VWQ+  
Sbjct: 315 SA-DGQTLFAGYTDNLVRVWQVTI 337

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 154 DNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCVDYYHGGDKP-YLISGADD 208
            ++  +S     T  ++     +       TL+GH   V  +        P  ++S + D
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTP--QFPDMILSASRD 60

Query: 209 RLVKIWDYQNK-----TCVQTLE 226
           + + +W             + L 
Sbjct: 61  KTIIMWKLTRDETNYGIPQRALR 83

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  124 bits (313), Expect = 2e-34
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 11/193 (5%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH----- 93
           +        + + +    +  V A         + TG     V V++ +           
Sbjct: 34  IGPGIPRHARQINTLNHGE-VVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQL 91

Query: 94  SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINP 152
                 +Y+R   + P    L+   +   + +W+        +            + I+P
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
            D+    S   D  + VW L + +     +GH  G +C+D  + G    L +G  D  V+
Sbjct: 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT--KLWTGGLDNTVR 208

Query: 213 IWDYQNKTCVQTL 225
            WD +    +Q  
Sbjct: 209 SWDLREGRQLQQH 221

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  116 bits (293), Expect = 2e-31
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 12/175 (6%)

Query: 59  PVRAAKFVP-RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
           P  +       +   V    D  +         + ++   H + V  V +      + T 
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTG 69

Query: 118 SDDMLIKLWN----WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
                +K+W+      K+   Q       +Y+    + P D  T        T+ +W L 
Sbjct: 70  GKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLA 127

Query: 174 SASPN--FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           + +P     L         +            S   D  + +WD  N+T V+  +
Sbjct: 128 APTPRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQ 180

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  112 bits (283), Expect = 7e-30
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 8/167 (4%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD 119
             A    P      +   D  + V++ +       F+ H+D   C+ +      L T   
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203

Query: 120 DMLIKLWNWEKAWACQQVFE-GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
           D  ++ W+  +    +Q+ +   T  +  +   P      A       V+V  +      
Sbjct: 204 DNTVRSWDLRE---GRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDK- 258

Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
           + L  HE  V  + + + G   + +S   D L+  W       +   
Sbjct: 259 YQLHLHESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGASIFQS 303

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  107 bits (270), Expect = 5e-28
 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 7/177 (3%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + VW+      V+ F+                 + TG  D  V  ++     +    +  
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F 223

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           +  +  +   PT  +L    +   +++ +  K    +     H   V+ +         F
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--DKYQLHLHESCVLSLKFAY-CGKWF 280

Query: 159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
            S   D  +  W+    +  F        V   D        Y+++G+ D+   +++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVYE 334

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 88.7 bits (221), Expect = 5e-21
 Identities = 24/137 (17%), Positives = 31/137 (22%), Gaps = 14/137 (10%)

Query: 98  HSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
            S       V             D LI         A Q     H   V  + I+     
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR--HARQINTLNHGEVVCAVTISN-PTR 64

Query: 157 TFASASLDRTVKVW-----QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLV 211
              +      VKVW        S          +  +        G    LI G +   +
Sbjct: 65  HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTL 121

Query: 212 KIWDYQNKT--CVQTLE 226
            IWD    T      L 
Sbjct: 122 SIWDLAAPTPRIKAELT 138

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 85.6 bits (213), Expect = 5e-20
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 5/134 (3%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V  W+    + ++  +     + +  + P   W+  G +   V V + N  ++ +    H
Sbjct: 207 VRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLH 264

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
              V  +       + +++  D L+  W               +  V+   I+  D+   
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQSKESSSVLSCDISV-DDKYI 321

Query: 159 ASASLDRTVKVWQL 172
            + S D+   V+++
Sbjct: 322 VTGSGDKKATVYEV 335

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 138 FEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
           F+G           +             D  +       A    TL  H + V  V   +
Sbjct: 3   FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN 61

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                ++ +G     VK+WD  +      + 
Sbjct: 62  PTR--HVYTGGKG-CVKVWDISHPGNKSPVS 89

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  126 bits (317), Expect = 3e-34
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 15  SDRVKCCDLHPTEPWMLASLY-NGHVHVWN----------HETNQNVKSFEVCDLPVRAA 63
              V      P    ++A+   +  V V++              Q               
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187

Query: 64  KFVP-RKNWIVTGSDDMQVCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQPFLL 115
            + P    ++++ SDD  +C+++ N        ++  + F  H+  V  VA H     L 
Sbjct: 188 SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247

Query: 116 TS-SDDMLIKLWN--WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
            S +DD  + +W+             + HT  V  +  NP      A+ S D+TV +W L
Sbjct: 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307

Query: 173 GS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            +      + E H+  +  V +    ++  L S   DR + +WD       Q+ E
Sbjct: 308 RNLKLKLHSFESHKDEIFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  117 bits (294), Expect = 5e-31
 Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLP-------V 60
            +L            +P     L S   +  + +W+                       V
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 234

Query: 61  RAAKFVPR-KNWIVTGSDDMQVCVF---NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL- 115
               +    ++   + +DD ++ ++   N NT +  H+ +AH+  V C++ +P   F+L 
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294

Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
           T S D  + LW+          FE H   + Q+  +P +    AS+  DR + VW L   
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354

Query: 176 SPNFTLEGHEKGVNCVDYYHGG------------DKPYLI-SGADDRLVKIWD 215
               + E  E G   + + HGG            ++P++I S ++D ++++W 
Sbjct: 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  100 bits (252), Expect = 3e-25
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 20/194 (10%)

Query: 5   LDIKRKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVW---NHETNQNVKSFEVCDLPV 60
           +D K   T  +  V+    H     +  S   +  + +W   N+ T++   + +     V
Sbjct: 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280

Query: 61  RAAKFVP-RKNWIVTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAVHPTQPFLL-TS 117
               F P  +  + TGS D  V +++   L+   HSFE+H D +  V   P    +L +S
Sbjct: 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340

Query: 118 SDDMLIKLWNWEKAWACQQ-------------VFEGHTHYVMQIVINPKDNNTFASASLD 164
             D  + +W+  K    Q              +  GHT  +     NP +     S S D
Sbjct: 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400

Query: 165 RTVKVWQLGSASPN 178
             ++VWQ+     N
Sbjct: 401 NIMQVWQMAENVYN 414

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 89.4 bits (222), Expect = 6e-21
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 21/149 (14%)

Query: 98  HSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEK---------AWACQQVFEGHTHYVMQ 147
           H   V      P    ++ T +    + ++++ K                  GH      
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186

Query: 148 IVINPKDNNTFASASLDRTVKVWQLGSAS-------PNFTLEGHEKGVNCVDYYHGGDKP 200
           +  NP  N    SAS D T+ +W + +               GH   V  V  +H   + 
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-WHLLHES 245

Query: 201 YLISGADDRLVKIWDYQNKT---CVQTLE 226
              S ADD+ + IWD +N        T++
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVD 274

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 11/109 (10%)

Query: 117 SSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL---- 172
            ++      +         ++   H   V +    P++    A+ +    V V+      
Sbjct: 103 DNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHP 162

Query: 173 ------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
                 G   P+  L GH+K    + +    +  YL+S +DD  + +WD
Sbjct: 163 SKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWD 210

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  123 bits (312), Expect = 6e-34
 Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 29/223 (13%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86
            +A    N  VH++    N+ V+  E+   +  V    + P  N IVT   D    V+  
Sbjct: 22  QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81

Query: 87  NT--LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE---KAWACQQVFEGH 141
                +        +   RCV   P +      S   +I +  +E     W C+ + +  
Sbjct: 82  KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI 141

Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQL--------------GSASPN----FTLEG 183
              V+ +  +P ++   A+ S D   +++                GS  P     F    
Sbjct: 142 RSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200

Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
               V+ V +   G    +   + D  V + D   K  V TL 
Sbjct: 201 SCGWVHGVCFSANGS--RVAWVSHDSTVCLADADKKMAVATLA 241

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  116 bits (292), Expect = 6e-31
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 10/177 (5%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLT 116
           P+    +   +  I    ++ +V ++  +     + H  + H+  V  V   P    ++T
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69

Query: 117 SSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
              D    +W  + + W    V          +   P +   FA  S  R + +      
Sbjct: 70  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQE 128

Query: 176 SPNF----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           +  +      +     V  +D++       L +G+ D   +I+    K   +     
Sbjct: 129 NDWWVCKHIKKPIRSTVLSLDWHPNSV--LLAAGSCDFKCRIFSAYIKEVEERPAPT 183

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  105 bits (265), Expect = 4e-27
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVIN 151
           HSF    + + C A +  +  +    ++  + ++      W      + H   V  +   
Sbjct: 4   HSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 61

Query: 152 PKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR 209
           P D+N   +   DR   VW L   +  P   +    +   CV +     K     G+  R
Sbjct: 62  P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK--FAVGSGSR 118

Query: 210 LVKIWDYQNK----TCVQTLE 226
           ++ I  ++ +     C    +
Sbjct: 119 VISICYFEQENDWWVCKHIKK 139

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  101 bits (254), Expect = 1e-25
 Identities = 26/212 (12%), Positives = 59/212 (27%), Gaps = 27/212 (12%)

Query: 39  VHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF---- 92
            +VW  +      +  +   +   R  ++ P +     GS    + +  +     +    
Sbjct: 76  AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE----------KAWA-------CQ 135
           H  +     V  +  HP    L   S D   ++++              W          
Sbjct: 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM 195

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
                   +V  +  +  + +  A  S D TV +          TL      +  V +  
Sbjct: 196 FESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF-- 252

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
             +   + +G D     ++ Y +     +   
Sbjct: 253 ITESSLVAAGHDCF-PVLFTYDSAAGKLSFGG 283

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 92.3 bits (230), Expect = 3e-22
 Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 12/191 (6%)

Query: 41  VWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD 100
                  + +         V    F    + +   S D  VC+ + +      +  + + 
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 245

Query: 101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS 160
            +  V        +    D     L+ ++ A A +  F G      Q             
Sbjct: 246 PLLAVTFITESSLVAAGHDCF-PVLFTYDSA-AGKLSFGGRLDVPKQSSQRGLTARERFQ 303

Query: 161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY--LISGADDRLVKIWDYQN 218
               +        + +   +L  H+  V+ +    GG        +   D  + IWD   
Sbjct: 304 NLDKKASSEGSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD--- 358

Query: 219 KTCVQTLESGI 229
              V++LES +
Sbjct: 359 ---VRSLESAL 366

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 8/140 (5%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           V + + +    V +     LP+ A  F+   + +  G D     +F Y++     SF   
Sbjct: 226 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFGGR 284

Query: 99  SDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP---KD 154
            D  +  +           + D       +     A   +   H + V QI +       
Sbjct: 285 LDVPKQSSQRGLTARERFQNLDKKASSEGSAA---AGAGLDSLHKNSVSQISVLSGGKAK 341

Query: 155 NNTFASASLDRTVKVWQLGS 174
            + F +  +D  + +W + S
Sbjct: 342 CSQFCTTGMDGGMSIWDVRS 361

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  124 bits (313), Expect = 9e-34
 Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 20/203 (9%)

Query: 39  VHVWNHETNQNVKSFEV---CDLPVRAAKFVPRKNW-----------IVTGSDDMQVCVF 84
             +WN  +   ++ FE+       + A       +             V       + V+
Sbjct: 173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVY 232

Query: 85  NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
                        H   +  +  + T   LL++SDD  +++W+       Q  F GH+  
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQS 291

Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS 204
           ++        ++   S S+D +V++W L   +           +         D      
Sbjct: 292 IVSASWVG--DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ--DGQKYAV 347

Query: 205 GADDRLVKIWDYQN-KTCVQTLE 226
              D  V ++D +   +  ++L 
Sbjct: 348 AFMDGQVNVYDLKKLNSKSRSLY 370

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  124 bits (313), Expect = 1e-33
 Identities = 28/190 (14%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + V+                P+   +F      +++ SDD  + +++       + F  H
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           S  +   +       +++ S D  ++LW+ ++      +       +    I+  D   +
Sbjct: 289 SQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQ-DGQKY 345

Query: 159 ASASLDRTVKVWQLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI-WDY 216
           A A +D  V V+ L   +    +L G+  G+            Y  S  +D +  + W+ 
Sbjct: 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL-YASYQSSQDNDYIFDLSWNC 404

Query: 217 QNKTCVQTLE 226
                     
Sbjct: 405 AGNKISVAYS 414

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  107 bits (269), Expect = 2e-27
 Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 36/201 (17%)

Query: 59  PVRAAKFVPR-KNWIVTGSDDMQVCVFNYNT--------------------LERFHSFEA 97
            + ++ + P  ++ +  G  +    +                              S   
Sbjct: 47  NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK 106

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
            ++ V C+A       ++T  ++  ++LWN  K  A   V   H   ++ +  N  D   
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNK-DGTH 163

Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKG---VNCVDYYHGGDKPY---------LISG 205
             S  ++    +W + S +     E  E G   +N  ++   G              +  
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223

Query: 206 ADDRLVKIWDYQNKTCVQTLE 226
                + ++    KT    L 
Sbjct: 224 GPKGAIFVYQITEKTPTGKLI 244

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 92.3 bits (230), Expect = 4e-22
 Identities = 16/156 (10%), Positives = 49/156 (31%), Gaps = 6/156 (3%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
           + +W+     +   F      + +A +V   +   +++ S D  V +++           
Sbjct: 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK---VISCSMDGSVRLWSLKQNTLLALSI 327

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
                +    +         +  D  + +++ +K  +  +   G+   ++  +  P   +
Sbjct: 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387

Query: 157 TFASASLDRTVKV-WQLGSASPNFTLEGHEKGVNCV 191
             +S   D    + W       +      E  V  +
Sbjct: 388 YQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 78.1 bits (193), Expect = 4e-17
 Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 31/151 (20%)

Query: 96  EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
                              + SSDD+   +   ++              ++    NP D 
Sbjct: 7   GEDGASTVERETQEDDTNSIDSSDDLDGFVKILKE--------IVKLDNIVSSTWNPLDE 58

Query: 156 NTFASASLDRTVKVWQLGSASPN--------------------FTLEGHEKGVNCVDYYH 195
           +  A    +   ++ ++                           +       V C+ + H
Sbjct: 59  SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            G+   +++G ++  +++W+      +  L 
Sbjct: 119 DGN--SIVTGVENGELRLWNKTGA-LLNVLN 146

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  121 bits (305), Expect = 5e-33
 Identities = 42/211 (19%), Positives = 76/211 (36%), Gaps = 30/211 (14%)

Query: 39  VHVWNHETNQ------NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER- 91
           + +   +          V S  +      + K       +++GS D  V ++     E+ 
Sbjct: 7   LDIQVVKRGILEGHSDWVTS--IVAGF--SQKENEDSPVLISGSRDKTVMIWKLYEEEQN 62

Query: 92  ------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
                   +   H+ +V  +A+     F ++SS D  ++LW+        + F GH   V
Sbjct: 63  GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEV 121

Query: 146 MQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCV--------DYYH 195
             +  +P DN    SA  +R +K+W +       +   E H   V+CV            
Sbjct: 122 YSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
               PY  S   D  +K+W+  N     T +
Sbjct: 181 QPFAPYFASVGWDGRLKVWN-TNFQIRYTFK 210

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  120 bits (304), Expect = 5e-33
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 18/200 (9%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFE 96
           + +W+  T    K F      V +  F P    I++   + ++ ++N            E
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159

Query: 97  AHSDYVRCVAVHP----------TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
            HSD+V CV   P            P+  +   D  +K+WN       +  F+ H   V 
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHESNVN 217

Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
            + I+P +    A+   D+ + +W + + +           +N + +       ++  G 
Sbjct: 218 HLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP--KLQWVAVGT 274

Query: 207 DDRLVKIWDYQNKTCVQTLE 226
           D   VKI++   ++      
Sbjct: 275 DQG-VKIFNLMTQSKAPVCT 293

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  116 bits (294), Expect = 1e-31
 Identities = 45/205 (21%), Positives = 73/205 (35%), Gaps = 20/205 (9%)

Query: 39  VHVWNHETNQNVKSFEVCDLP-------VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91
           V +W     +    F +           V          + ++ S D  + +++  T   
Sbjct: 51  VMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT 110

Query: 92  FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVI 150
           +  F  H   V  VA  P    +L++  +  IKLWN   +        E H+ +V  +  
Sbjct: 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170

Query: 151 NP---------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY 201
           +P              FAS   D  +KVW        +T + HE  VN +     G   Y
Sbjct: 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGK--Y 227

Query: 202 LISGADDRLVKIWDYQNKTCVQTLE 226
           + +G  D+ + IWD  N T  Q   
Sbjct: 228 IATGGKDKKLLIWDILNLTYPQREF 252

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  108 bits (273), Expect = 2e-28
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 76  SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF------LLTSSDDMLIKLWN-- 127
           +D+  + +            E HSD+V  +    +Q        L++ S D  + +W   
Sbjct: 2   ADNSSLDIQVVKR----GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY 57

Query: 128 ----WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
                       +   GH H+V  + ++  +N    S+S D+T+++W L + +      G
Sbjct: 58  EEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVG 116

Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN--KTCVQTLE 226
           H+  V  V +    D   ++S   +R +K+W+     K      E
Sbjct: 117 HQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAEKE 159

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  101 bits (254), Expect = 9e-26
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 19/168 (11%)

Query: 61  RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
            A K  P   +  +   D ++ V+N N  +  ++F+AH   V  +++ P   ++ T   D
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKD 234

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS------ 174
             + +W+        Q        + QI  NP      A  + D+ VK++ L +      
Sbjct: 235 KKLLIWDILNL-TYPQREFDAGSTINQIAFNP-KLQWVAVGT-DQGVKIFNLMTQSKAPV 291

Query: 175 -------ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
                   +     +G       + +   G    L +G  D +++ + 
Sbjct: 292 CTIEAEPITKAEGQKGKNPQCTSLAWNALGK--KLFAGFTDGVIRTFS 337

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 76.9 bits (190), Expect = 7e-17
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 15/150 (10%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + VWN    Q   +F+  +  V      P   +I TG  D ++ +++   L         
Sbjct: 196 LKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE------------KAWACQQVFEGHTHYVM 146
              +  +A +P   ++   +D   +K++N              +     +  +G      
Sbjct: 255 GSTINQIAFNPKLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCT 313

Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSAS 176
            +  N        +   D  ++ +   +++
Sbjct: 314 SLAWNA-LGKKLFAGFTDGVIRTFSFETSA 342

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  120 bits (303), Expect = 9e-33
 Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 39  VHVWNHETNQNVKSFEVC---DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFH 93
           V VW  +     +   V       V+   + P +  + + S D  V ++           
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188

Query: 94  SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN--------------WEKAWACQQVFE 139
           + E H   V  +A  P+   L + SDD  +++W                + +W C     
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248

Query: 140 G-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---------NFTLEGHEKGVN 189
           G H+  +  I          A+A  D  ++V+Q    S              + H + VN
Sbjct: 249 GFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307

Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           CV + +  +   L S +DD  V  W YQ    +    
Sbjct: 308 CVAW-NPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  119 bits (302), Expect = 1e-32
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 12/179 (6%)

Query: 57  DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS---FEAHSDYVRCVAVHPTQPF 113
           D       + P    + +   D ++ ++              E H   VR VA  P   +
Sbjct: 16  DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY 75

Query: 114 LLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
           L ++S D    +W      + C    EGH + V  +   P   N  A+ S D++V VW++
Sbjct: 76  LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEV 134

Query: 173 GSASPN---FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ--NKTCVQTLE 226
                      L  H + V  V ++   +   L S + D  VK++  +  +  C  TLE
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLE 191

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  112 bits (282), Expect = 8e-30
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 25/213 (11%)

Query: 39  VHVWNHETNQN--VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF---H 93
             +W    +    V + E  +  V++  + P  N + T S D  V V+  +  + +    
Sbjct: 85  TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144

Query: 94  SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINP 152
              +H+  V+ V  HP+Q  L ++S D  +KL+  E   W C    EGH   V  +  +P
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204

Query: 153 KDNNTFASASLDRTVKVWQL-------GSASPNF--------TLEG-HEKGVNCVDYYHG 196
                 AS S DRTV++W+        G A            TL G H + +  + +   
Sbjct: 205 -SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263

Query: 197 GDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
                L +   D  ++++     +  Q     +
Sbjct: 264 TG--ALATACGDDAIRVFQEDPNSDPQQPTFSL 294

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  111 bits (281), Expect = 1e-29
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 11/148 (7%)

Query: 87  NTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTH 143
           ++L       AH D     +A +P    L +   D  I++W  E         + EGH  
Sbjct: 3   DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR 62

Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPY 201
            V ++  +P   N  ASAS D T  +W+          TLEGHE  V  V +   G+   
Sbjct: 63  TVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--L 119

Query: 202 LISGADDRLVKIWDY---QNKTCVQTLE 226
           L + + D+ V +W+        CV  L 
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLN 147

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 91.9 bits (229), Expect = 3e-22
 Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 28/203 (13%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNV--KSFEVCDLPVRAAKF 65
             L + +  VK    HP++  +LAS  Y+  V ++  E +  V   + E  +  V +  F
Sbjct: 144 SVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202

Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA----------------HSDYVRCVAVHP 109
            P    + + SDD  V ++                             HS  +  +A   
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262

Query: 110 TQPFLLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
               L T+  D  I+++  +               + + H+  V  +  NPK+    AS 
Sbjct: 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322

Query: 162 SLDRTVKVWQLGSASPNFTLEGH 184
           S D  V  W+            H
Sbjct: 323 SDDGEVAFWKYQRPEGLHHHHHH 345

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  120 bits (304), Expect = 9e-33
 Identities = 30/184 (16%), Positives = 71/184 (38%), Gaps = 19/184 (10%)

Query: 59  PVRAAKFVPR----KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV------- 107
           P+   +F          +       +V ++  ++       +++ D              
Sbjct: 20  PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY 79

Query: 108 --HPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR 165
             + + P L  +    +I++ N      C + + GH + + ++  +P+D N   S S D 
Sbjct: 80  DSNTSHPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 138

Query: 166 TVKVWQLGSASPNFT---LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV 222
            +++W + + +       +EGH   V   DY   G+   ++S   D  +K+W   +K  +
Sbjct: 139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE--KIMSCGMDHSLKLWRINSKRMM 196

Query: 223 QTLE 226
             ++
Sbjct: 197 NAIK 200

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  116 bits (293), Expect = 3e-31
 Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 47/237 (19%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-----VCDLPVRAAKF----VPRKN 70
                  +P + A++ +  V ++   +   ++  +       D       +         
Sbjct: 27  NWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP 86

Query: 71  WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWE 129
            +        + + N  T++    +  H + +  +  HP  P LL S S D  ++LWN +
Sbjct: 87  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146

Query: 130 KAWACQQVF---EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG--- 183
                  +F   EGH   V+    +        S  +D ++K+W++ S      ++    
Sbjct: 147 TD-TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204

Query: 184 -------------------------HEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
                                    H   V+CV +   GD   ++S + +  +  W 
Sbjct: 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD--LILSKSCENAIVCWK 257

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  100 bits (251), Expect = 3e-25
 Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 14/144 (9%)

Query: 95  FEAHSDYVRCVAVHPT----QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVI 150
            E H+  +  V  +       P +  +     + L+         ++ + +         
Sbjct: 14  KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENF 72

Query: 151 NP--------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL 202
                       +   A A     +++    +        GH   +N +  +H  D   L
Sbjct: 73  YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK-FHPRDPNLL 131

Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
           +S + D  +++W+ Q  T V    
Sbjct: 132 LSVSKDHALRLWNIQTDTLVAIFG 155

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 97.7 bits (244), Expect = 3e-24
 Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 56/259 (21%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVC---DLPVRAAK 64
           +      + +     HP +P +L S+  +  + +WN +T+  V  F         V +A 
Sbjct: 109 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNT----------------------------LERFHSFE 96
           +      I++   D  + ++  N+                               F + +
Sbjct: 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN-------------WEKAWACQQVFEGHTH 143
            H +YV CV        +L+ S +  I  W               E        F+    
Sbjct: 229 IHRNYVDCVRWLGD--LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC 286

Query: 144 YVMQIVINP-KDNNTFASASLDRTVKVWQLGSASPN----FTLEGHEKG--VNCVDYYHG 196
            +  +  +        A  +    + VW L    P+     TL  H+ G  +    +   
Sbjct: 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR- 345

Query: 197 GDKPYLISGADDRLVKIWD 215
            D   LI+  DD  +  WD
Sbjct: 346 -DSSILIAVCDDASIWRWD 363

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 135 QQVFEGHTHYVMQIVINP--KDNNTFASASL-DRTVKVWQLGSASPNFTLEGH-----EK 186
             + E H   +  +  N   K+ +    A++    V +++  S      L+ +     ++
Sbjct: 11  NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADE 70

Query: 187 GVNCVDYYHGG--DKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                 + +      P L       +++I +     C++   
Sbjct: 71  NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  120 bits (304), Expect = 2e-32
 Identities = 22/184 (11%), Positives = 49/184 (26%), Gaps = 15/184 (8%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS--DYVRCVAVHPTQPFLLT 116
                            S D  + +++    +      +         +        +  
Sbjct: 25  IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAG 84

Query: 117 SSDDMLIKLWNWEK---AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG 173
           + D+  ++L++  +   A      F  H+  V  +  N K +N  AS   +  + +W + 
Sbjct: 85  ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144

Query: 174 SASPNF---------TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
             + +                  V  + +          S        IWD + K  V  
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH-VFASAGSSNFASIWDLKAKKEVIH 203

Query: 225 LESG 228
           L   
Sbjct: 204 LSYT 207

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  116 bits (293), Expect = 7e-31
 Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 23/242 (9%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLP-------- 59
            + +  S  VK    +  +  +LAS   NG + +W+        S      P        
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166

Query: 60  -VRAAKFVP-RKNWIVTGSDDMQVCVFNYNT------LERFHSFEAHSDYVRCVAVHPTQ 111
            V +  +     +   +        +++         L            +  V  HP  
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226

Query: 112 PFLLT----SSDDMLIKLWNWEKAWACQQVF-EGHTHYVMQIVINPKDNNTFASASLDRT 166
              +     S +D  I +W+   A    Q   +GH   ++ +    +D +   S+  D T
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286

Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           V +W   SA                 +            + D  +++   QN T     +
Sbjct: 287 VLLWNPESAEQLSQFPARGNWCFKTKFAPEA-PDLFACASFDNKIEVQTLQNLTNTLDEQ 345

Query: 227 SG 228
             
Sbjct: 346 ET 347

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 75  GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC 134
           G+    V +  ++    F    +H      V+   +       S D  ++LW+   A   
Sbjct: 1   GAMGSMVKLAEFSRTATF--AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA-DS 57

Query: 135 QQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGV 188
           ++             +  +  +N   A A  + +++++    A+           H   V
Sbjct: 58  EKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116

Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
             V  ++      L SG ++  + IWD    T   +  + +
Sbjct: 117 KTVK-FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 92.8 bits (231), Expect = 3e-22
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 33/232 (14%)

Query: 10  KLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDL------PVRA 62
           +  +  D V     + +   + AS   +    +W+ +  + V               +  
Sbjct: 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219

Query: 63  AKFVPR-KNWIVTGSDDMQ---VCVFNYNTLERF--HSFEAHSDYVRCVAVHPTQP-FLL 115
            ++ P+    + T +       + +++            + H   +  +         LL
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279

Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
           +S  D  + LWN E A      F    ++  +    P+  + FA AS D  ++V  L   
Sbjct: 280 SSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL--Q 336

Query: 176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           +   TL+  E                  +   +     W+  ++   +   S
Sbjct: 337 NLTNTLDEQE----------------TETKQQESETDFWNNVSREESKEKPS 372

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score =  119 bits (301), Expect = 3e-32
 Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 9/194 (4%)

Query: 39  VHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA 97
           V+VWN ++       E      V + K+    +++  G  +  V +++  +  +  +   
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
           H   V C++ +     L + S    I   +   A       +GH+  V  +     D   
Sbjct: 175 HQARVGCLSWNRHV--LSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQ 231

Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI---SGADDRLVKIW 214
            AS   D  V++W   S+ P FT   H   V  V +     +  L+    G  D+ +  W
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP--WQSNLLATGGGTMDKQIHFW 289

Query: 215 DYQNKTCVQTLESG 228
           +      V T+++G
Sbjct: 290 NAATGARVNTVDAG 303

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score =  106 bits (267), Expect = 3e-27
 Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 23/205 (11%)

Query: 37  GHVHVWNHET-NQNVKSF-----EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE 90
           G +H  +    N  + +      EVC L      +      + +G +D  V +++  +  
Sbjct: 196 GAIHHHDVRIANHQIGTLQGHSSEVCGL-----AWRSDGLQLASGGNDNVVQIWDARSSI 250

Query: 91  RFHSFEAHSDYVRCVAVHPTQPFLLTS---SDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
              +   H+  V+ VA  P Q  LL +   + D  I  WN     A     +     V  
Sbjct: 251 PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAG-SQVTS 308

Query: 148 IVINPKDNNTFASA--SLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
           ++ +P  +    S     D  + +W       +    +  H+  V        G    L 
Sbjct: 309 LIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR--ILS 365

Query: 204 SGADDRLVKIWDYQNKTCVQTLESG 228
           + A D  +K W   +   V+     
Sbjct: 366 TAASDENLKFWRVYDGDHVKRPIPI 390

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 93.8 bits (234), Expect = 1e-22
 Identities = 31/203 (15%), Positives = 77/203 (37%), Gaps = 12/203 (5%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT 88
            L+  L NG V +++ E+   +++       V        ++ + +GS    +   +   
Sbjct: 148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGC--LSWNRHVLSSGSRSGAIHHHDVRI 205

Query: 89  LER-FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
                 + + HS  V  +A       L +  +D ++++W+   +   +     H   V  
Sbjct: 206 ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKA 264

Query: 148 IVINPKDNNTFASA--SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS- 204
           +   P  +N  A+   ++D+ +  W   + +   T++     V  + +        ++S 
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSK--EIMST 321

Query: 205 -GADDRLVKIWDYQNKTCVQTLE 226
            G  D  + IW Y +    + ++
Sbjct: 322 HGFPDNNLSIWSYSSSGLTKQVD 344

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
             D      +  +   ++  + +  + +WN +            + YV  +  +  D + 
Sbjct: 90  IIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSF 148

Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
            +    +  V ++ + S +   T+ GH+  V C+ +    ++  L SG+    +   D +
Sbjct: 149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVR 204

Query: 218 N-KTCVQTLE 226
                + TL+
Sbjct: 205 IANHQIGTLQ 214

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 25/161 (15%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT---GSDDMQVCVFNYNTLERFHSF 95
           V +W+  ++    +    +  V+A  + P ++ ++    G+ D Q+  +N  T  R ++ 
Sbjct: 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300

Query: 96  EAHSDYVRCVAVHPTQPFLLTS--SDDMLIKLWNWEKAWACQQV--FEGHTHYVMQIVIN 151
           +A S  V  +   P    ++++    D  + +W++  +    +      H   V+   ++
Sbjct: 301 DAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQVDIPAHDTRVLYSALS 358

Query: 152 PKDNNTFASASLDRTVKVWQLGSASPNFT-LEGHEKGVNCV 191
           P D    ++A+ D  +K W++         +   +   + +
Sbjct: 359 P-DGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSI 398

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  116 bits (294), Expect = 3e-31
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 23/207 (11%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           + +W+ E  + V   +  +  + +  + P  + +V+GS D  V +++  T +   +    
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206

Query: 99  SDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWE------KAWACQQVFEGHTHYVMQIVIN 151
              V  VAV P    ++   S D  +++W+ E      +  +  +   GH   V  +V  
Sbjct: 207 DG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265

Query: 152 PKDNNTFASASLDRTVKVWQLGSASPNF------------TLEGHEKGVNCVDYYHGGDK 199
             D  +  S SLDR+VK+W L +A+               T  GH+  V  V      + 
Sbjct: 266 R-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE- 323

Query: 200 PYLISGADDRLVKIWDYQNKTCVQTLE 226
            Y++SG+ DR V  WD ++   +  L+
Sbjct: 324 -YILSGSKDRGVLFWDKKSGNPLLMLQ 349

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  116 bits (293), Expect = 4e-31
 Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 25/202 (12%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNT---LERFHS 94
           V +W+  T Q   +  + D  V      P    +I  GS D  V V++  T   +ER  S
Sbjct: 189 VRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247

Query: 95  ----FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN-----------WEKAWACQQVFE 139
                  H D V  V        +++ S D  +KLWN              +  C+  + 
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK 199
           GH  +V+ +     ++    S S DR V  W   S +P   L+GH   V  V   +G   
Sbjct: 308 GHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366

Query: 200 P----YLISGADDRLVKIWDYQ 217
                   +G+ D   +IW Y+
Sbjct: 367 GPEYNVFATGSGDCKARIWKYK 388

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  115 bits (291), Expect = 8e-31
 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 23/209 (11%)

Query: 37  GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
                     N N  S    DL +R+  F P   ++ TG++D  + +++    +     +
Sbjct: 103 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
            H   +  +   P+   L++ S D  +++W+      C          V  + ++P D  
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDG-VTTVAVSPGDGK 220

Query: 157 TFASASLDRTVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYLISGADDR 209
             A+ SLDR V+VW   +      L+       GH+  V  V +   G    ++SG+ DR
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDR 278

Query: 210 LVKIWDYQNK------------TCVQTLE 226
            VK+W+ QN             TC  T  
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYI 307

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  115 bits (290), Expect = 1e-30
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 23/186 (12%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS------------------DY 101
           V   KF     ++ TG +     V+  +           S                   Y
Sbjct: 67  VCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125

Query: 102 VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA 161
           +R V   P   FL T ++D LI++W+ E       + +GH   +  +   P   +   S 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFP-SGDKLVSG 183

Query: 162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC 221
           S DRTV++W L +   + TL   + GV  V     GD  Y+ +G+ DR V++WD +    
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIED-GVTTVAV-SPGDGKYIAAGSLDRAVRVWDSETGFL 241

Query: 222 VQTLES 227
           V+ L+S
Sbjct: 242 VERLDS 247

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  111 bits (280), Expect = 4e-29
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 28/192 (14%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL-------ERFHSFEAHSDYVRCVAVHPTQ 111
           P+           +           +               H    H+  V CV      
Sbjct: 17  PIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG 76

Query: 112 PFLLTSSDDMLIKLWN-----------------WEKAWACQQVFEGHTHYVMQIVINPKD 154
            +L T  +    +++                   +              Y+  +  +P D
Sbjct: 77  EYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-D 134

Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
               A+ + DR +++W + +      L+GHE+ +  +DY+  GD   L+SG+ DR V+IW
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIW 192

Query: 215 DYQNKTCVQTLE 226
           D +   C  TL 
Sbjct: 193 DLRTGQCSLTLS 204

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =   99 bits (250), Expect = 7e-25
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 24/157 (15%)

Query: 92  FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN------WEKAWACQQVFEGHTHYV 145
           ++    HS  +    +      +  +        +         +          HT  V
Sbjct: 8   YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 67

Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP----- 200
             +  +  D    A+   ++T +V+++   S    L          +  +    P     
Sbjct: 68  CCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125

Query: 201 -----------YLISGADDRLVKIWDYQNKTCVQTLE 226
                      +L +GA+DRL++IWD +N+  V  L+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 91.5 bits (228), Expect = 7e-22
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 39  VHVWNHETNQNVKSFEVCDLP-------VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER 91
           V VW+ ET   V+  +  +         V +  F      +V+GS D  V ++N      
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290

Query: 92  F------------HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
                         ++  H D+V  VA      ++L+ S D  +  W+ +       + +
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQ 349

Query: 140 GHTHYVMQIVINPK-----DNNTFASASLDRTVKVWQLGSASPN 178
           GH + V+ + +        + N FA+ S D   ++W+    +PN
Sbjct: 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  115 bits (289), Expect = 1e-30
 Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 12/159 (7%)

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNW 128
             + + D    + +           +  D + C++  P      FL+  S    ++ W  
Sbjct: 18  FGSATTDNHNPMKDIEVTS------SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV 71

Query: 129 EKAWACQ-QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
           + +     +  + HT  V+ +  +  D +   +AS D+T K+W L S      +  H+  
Sbjct: 72  QDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAP 129

Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           V  + +    +   +++G+ D+ +K WD ++   +  L+
Sbjct: 130 VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 98.9 bits (247), Expect = 1e-24
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 21/206 (10%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFV--PRKNWIVTGSDDMQVCVFNYNTLERFHSFE 96
             +W+  +NQ ++     D PV+   ++  P  + ++TGS D  +  ++  +       +
Sbjct: 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP---K 153
                     ++P    + T+   +++     + +   +++     H    + I      
Sbjct: 169 LPERCYCADVIYPMA-VVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQN 226

Query: 154 DNNTFASASLDRTVKVWQL---GSASPNFTLEGHEKGVNCVDYYHGG----------DKP 200
               FA  S++  V +  +     A  NFT + H                          
Sbjct: 227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG 286

Query: 201 YLISGADDRLVKIWDYQNKTCVQTLE 226
            L +   D     WD   +T ++T E
Sbjct: 287 TLATVGSDGRFSFWDKDARTKLKTSE 312

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 91.9 bits (229), Expect = 4e-22
 Identities = 25/205 (12%), Positives = 58/205 (28%), Gaps = 22/205 (10%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
           +  W+  ++  +   ++ +    A    P    + T    + V        E        
Sbjct: 153 LKFWDTRSSNPMMVLQLPERCYCADVIYPMA-VVATAERGLIVYQLENQPSEFRRIESPL 211

Query: 99  SDYVRCVAVHPTQPFLLT----SSDDMLIKLWNWE--------------KAWACQQVFEG 140
               RCVA+   +    T     S +  + +                  ++         
Sbjct: 212 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271

Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP 200
             + V  I  +P  + T A+   D     W   + +   T E  ++ ++   + H G+  
Sbjct: 272 DIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGN-- 328

Query: 201 YLISGADDRLVKIWDYQNKTCVQTL 225
                +     K  ++ N      +
Sbjct: 329 IFAYASSYDWSKGHEFYNPQKKNYI 353

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 89.2 bits (222), Expect = 4e-21
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 23/208 (11%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP---RKNWIVTGSDDMQVCVFN 85
           M  S   + H  + + E   +          +    F P     N+++ GS    V  + 
Sbjct: 17  MFGSATTDNHNPMKDIEVTSSPDD------SIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70

Query: 86  --YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH 143
              +      + + H+  V  V        + T+S D   K+W+             H  
Sbjct: 71  VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--QAIQIAQHDA 128

Query: 144 YVMQI--VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY 201
            V  I  +  P + +   + S D+T+K W   S++P   L+  E+       Y     P 
Sbjct: 129 PVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-----PM 182

Query: 202 LISGADDRLVKIWDYQNKT-CVQTLESG 228
            +    +R + ++  +N+    + +ES 
Sbjct: 183 AVVATAERGLIVYQLENQPSEFRRIESP 210

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 21/166 (12%)

Query: 38  HVHVWNHETNQNVKSFEVCDLPVRAAKFVP----RKNWIVTGSDDMQVCVFNYNT---LE 90
            V+   ++ ++  +         R          +      GS + +V +   N     +
Sbjct: 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252

Query: 91  RFHSFEAHSDY------------VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
              +F+ H               V  +A HP    L T   D     W+ + A    +  
Sbjct: 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD-ARTKLKTS 311

Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
           E     +     N  + N FA AS     K  +  +      +   
Sbjct: 312 EQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFYNPQKKNYIFLR 356

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 13/81 (16%)

Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV----DYYHGG 197
           + +           + F SA+ D    +  +            +  + C+        G 
Sbjct: 2   SLFGTTSGFGTSGTSMFGSATTDNHNPMKDIE------VTSSPDDSIGCLSFSPPTLPGN 55

Query: 198 DKPYLISGADDRLVKIWDYQN 218
              +LI+G+    V+ W+ Q+
Sbjct: 56  ---FLIAGSWANDVRCWEVQD 73

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  115 bits (289), Expect = 2e-30
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 37/221 (16%)

Query: 39  VHVWNHETNQNVKSFEVCDLP-------------VRAAKFVPRK-NWIVTGSDDMQVCVF 84
           + +++ E +     +    +              V   ++ P       + S D  + V+
Sbjct: 68  IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW 127

Query: 85  NYNTLERFHSFEAHSDYVRCVAVHP---TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH 141
           + NTL+    F    + V    + P       +   +    ++L + +   +C  + +GH
Sbjct: 128 DTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGH 185

Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----------------TLEGHE 185
              ++ +  +P+ +   A+AS D  VK+W +  AS                       H 
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245

Query: 186 KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             VN + +   G   +L++   D  +++W+  N        
Sbjct: 246 GKVNGLCFTSDGL--HLLTVGTDNRMRLWNSSNGENTLVNY 284

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  115 bits (289), Expect = 2e-30
 Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 15/178 (8%)

Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDM 121
           A+    ++ +     +    V      +       H   +  + + P    ++L+   D 
Sbjct: 7   ARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDG 66

Query: 122 LIKLWNWE------------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV 169
           +I L++ E                 +   + H + V  +   P D   F S+S D+T+KV
Sbjct: 67  VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126

Query: 170 WQLGSASPNFTLEGHEKGVNCVDY-YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           W   +          E+ V              +  G     V++ D ++ +C   L+
Sbjct: 127 WDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  106 bits (266), Expect = 3e-27
 Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 27/239 (11%)

Query: 15  SDRVKCCDLHP--TEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW 71
            + V    + P  T+  ++A       V + + ++       +     + A  + PR ++
Sbjct: 141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200

Query: 72  IV-TGSDDMQVCVFNYNTLER----------------FHSFEAHSDYVRCVAVHPTQPFL 114
           I+ T S D +V +++                        +  AH+  V  +        L
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260

Query: 115 LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM----QIVINPKDNNTFASASLDRTVKVW 170
           LT   D  ++LWN         V  G          +  ++   ++ F       T+ V+
Sbjct: 261 LTVGTDNRMRLWNSS-NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319

Query: 171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
            + S      L+GH K V+C  +        L SG+ D  +  W       V   +   
Sbjct: 320 TVYSGEQITMLKGHYKTVDCCVFQSNFQ--ELYSGSRDCNILAWVPSLYEPVPDDDETT 376

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  103 bits (258), Expect = 6e-26
 Identities = 24/231 (10%), Positives = 59/231 (25%), Gaps = 30/231 (12%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHET-NQNVKSFEVCDLPVRAAKFV 66
             L      +      P   ++LA+   +  V +W+    +  + + +  +     A   
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239

Query: 67  PRK---------------NWIVTGSDDMQVCVFNYNTLERF-----HSFEAHSDYVRCVA 106
                               ++T   D ++ ++N +  E                ++   
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299

Query: 107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
                   +       I ++          + +GH   V   V    +     S S D  
Sbjct: 300 SCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCN 357

Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL-VKIWDY 216
           +  W      P   +   ++           +     S +D+      W +
Sbjct: 358 ILAWVPSLYEP---VPDDDETTTKSQLNPAFE--DAWSSSDEEGGTSAWSH 403

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 31  LASLYNGH-VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
              +  G  + V+   + + +   +     V    F      + +GS D  +  +  +  
Sbjct: 307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366

Query: 90  ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDML-IKLWNWE 129
           E         +      ++P      +SSD+      W+  
Sbjct: 367 E---PVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  112 bits (283), Expect = 9e-30
 Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 11/179 (6%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLT 116
           P     F  ++   VT +   QV ++  +    +   +F  H   V CV   P    ++T
Sbjct: 13  PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVT 72

Query: 117 SSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS 174
            S D    ++       W    V          +  +P + + FA  S  R + V     
Sbjct: 73  CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQ 131

Query: 175 ASPNF----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
            +  +            +  +D++       L +G  DR   +     +      E+ +
Sbjct: 132 ENDWWVSKHLKRPLRSTILSLDWHPNNV--LLAAGCADRKAYVLSAYVRDVDAKPEASV 188

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  111 bits (279), Expect = 3e-29
 Identities = 35/225 (15%), Positives = 63/225 (28%), Gaps = 29/225 (12%)

Query: 30  MLAS-LYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNY 86
              +      V ++  + N    +      D  V    + P+ N IVT S D    V+  
Sbjct: 25  EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84

Query: 87  NTLERF---HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---AWACQQVFEG 140
                +         +     V   P +      S   +I +  +E+    W  + +   
Sbjct: 85  RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144

Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN------CVDYY 194
               ++ +  +P +N   A+   DR   V        +   E    G        C +Y 
Sbjct: 145 LRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP 203

Query: 195 HGG---------DKPYLISGADDRLVKIWDYQN----KTCVQTLE 226
            GG             L     D  V I            + T++
Sbjct: 204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK 248

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 99.1 bits (247), Expect = 1e-24
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 11/140 (7%)

Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-AWACQQVFEGHTHYVMQIVINPK 153
                      A +  +   +T++    ++L+  +   W   + F  H   V  +   P 
Sbjct: 7   LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP- 65

Query: 154 DNNTFASASLDRTVKVWQL---GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
            +N   + S DR   V++    G+      L    +    V +    DK     G+  R+
Sbjct: 66  KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK--FAVGSGARV 123

Query: 211 VKIWDYQNKT----CVQTLE 226
           + +  ++ +           
Sbjct: 124 ISVCYFEQENDWWVSKHLKR 143

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 69.0 bits (169), Expect = 6e-14
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 14/190 (7%)

Query: 40  HVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER----FHS 94
            VW      N    E      V A  F P  N +     D  V +   +  E+      +
Sbjct: 187 SVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246

Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----MQIV 149
            +     +R +        +    +   I L   E  WA  +  +  T            
Sbjct: 247 VKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTG 306

Query: 150 INPKDNNTFASASLDRTVKVWQL-GSASPNFTLEG-HEKGVNCVDYY--HGGDKPYLISG 205
              ++    +  +L  T +   L GS+    +L   H+  +  +  Y    G+     S 
Sbjct: 307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSS 366

Query: 206 ADDRLVKIWD 215
             D  V +W 
Sbjct: 367 GTDGRVVLWT 376

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 17/154 (11%), Positives = 45/154 (29%), Gaps = 17/154 (11%)

Query: 35  YNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY--NT 88
           ++  V +      +     + + ++  LP+R+  +      +  G +     +     + 
Sbjct: 225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY-SPILLQGNESG 283

Query: 89  LERFHSFEAHSDYVRCVAVHPT-------QPFLLTSSDDMLIKLWNWEKAWACQQVFEGH 141
                  +A +          T        P   T+       +     + +   +   H
Sbjct: 284 WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH 343

Query: 142 THYVMQIVI---NPKDNNTFASASLDRTVKVWQL 172
            + +  +      P +   F S+  D  V +W L
Sbjct: 344 QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  111 bits (279), Expect = 1e-29
 Identities = 50/237 (21%), Positives = 74/237 (31%), Gaps = 39/237 (16%)

Query: 30  MLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVF 84
           +LAS  Y+  V +W  E             D  V +  + P      +  GS D  + + 
Sbjct: 73  ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132

Query: 85  NYNTLERF---HSFEAHSDYVRCVAVHP-----------------TQPFLLTSSDDMLIK 124
            Y    ++       AH+     V+  P                       +   D LIK
Sbjct: 133 TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIK 192

Query: 125 LWNWE--KAWACQQVFEGHTHYVMQIVINP---KDNNTFASASLDRTVKVWQLGSASPNF 179
           LW  E    W  +Q  E H+ +V  +   P      +T AS S D  V +W    AS N 
Sbjct: 193 LWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT 252

Query: 180 ----TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY---QNKTCVQTLESGI 229
                L      V  V +    +   L     D  V +W         C+  +  G 
Sbjct: 253 WSPKLLHKFNDVVWHVSWSITAN--ILAVSGGDNKVTLWKESVDGQWVCISDVNKGQ 307

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  106 bits (267), Expect = 9e-28
 Identities = 38/194 (19%), Positives = 53/194 (27%), Gaps = 27/194 (13%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF--HSFEAHSDYVRCVAVHPTQP--FLL 115
           +  A+       + T S D  V +F+     +        H   V  VA         L 
Sbjct: 16  IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA 75

Query: 116 TSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQL- 172
           + S D  + +W  E   W       GH   V  +   P D     A  S D  + +    
Sbjct: 76  SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135

Query: 173 --GSASPNFTLEGHEKGVNCV---------------DYYHGGDKPYLISGADDRLVKIWD 215
             G          H  G N V                           SG  D L+K+W 
Sbjct: 136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195

Query: 216 YQNKT---CVQTLE 226
            +        Q LE
Sbjct: 196 EEEDGQWKEEQKLE 209

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  105 bits (263), Expect = 3e-27
 Identities = 40/227 (17%), Positives = 65/227 (28%), Gaps = 39/227 (17%)

Query: 37  GHVHVWNHETNQN--VKSFEVCDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNT--LE 90
             V +++        +      + PV    +      N + + S D +V ++       E
Sbjct: 35  RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94

Query: 91  RFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNW--EKAWACQQVFEGHTHYVM 146
           + H    H   V  V   P      L   S D  I L  +  E  W  +++   HT    
Sbjct: 95  KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154

Query: 147 QIVINP----------------KDNNTFASASLDRTVKVWQLGSASPNF---TLEGHEKG 187
            +   P                     FAS   D  +K+W+            LE H   
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214

Query: 188 VNCV----DYYHGGDKPYLISGADDRLVKIWDYQNKT----CVQTLE 226
           V  V              + S + D  V IW   + +      + L 
Sbjct: 215 VRDVAWAPSIGLPTS--TIASCSQDGRVFIWTCDDASSNTWSPKLLH 259

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  102 bits (256), Expect = 3e-26
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINP- 152
             +H D +    +      L T S D  +K+++             GH   V Q+     
Sbjct: 9   DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68

Query: 153 KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGADD 208
              N  AS S DR V +W+   G+   +    GH+  VN V +  +  G    L  G+ D
Sbjct: 69  MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG--LILACGSSD 126

Query: 209 RLVKIWDYQNKT---CVQTLE 226
             + +  Y  +      +   
Sbjct: 127 GAISLLTYTGEGQWEVKKINN 147

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 89.2 bits (222), Expect = 2e-21
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 23/193 (11%)

Query: 15  SDR-VKCCDLHPTEPWMLASLYNGHVH-----VWNHETNQNVKSFEVCDLPVRAAKFVPR 68
           SD  +          W +  + N H        W                   + +    
Sbjct: 125 SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID------HPSGQKPNY 178

Query: 69  KNWIVTGSDDMQVCVFNYNT---LERFHSFEAHSDYVRCVAVHPTQPF----LLTSSDDM 121
                +G  D  + ++        +     EAHSD+VR VA  P+       + + S D 
Sbjct: 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238

Query: 122 LIKLWNWEKA---WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
            + +W  + A       ++       V  +  +    N  A +  D  V +W+       
Sbjct: 239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVDGQW 297

Query: 179 FTLEGHEKGVNCV 191
             +    KG   V
Sbjct: 298 VCISDVNKGQGSV 310

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 79.2 bits (196), Expect = 9e-18
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCV 191
              V   H   +    ++       A+ S DR+VK++ +  G       L GHE  V  V
Sbjct: 5   INTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV 63

Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            + H      L S + DR V IW  +N T  ++ E
Sbjct: 64  AWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  112 bits (282), Expect = 2e-29
 Identities = 39/190 (20%), Positives = 63/190 (33%), Gaps = 23/190 (12%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYN--TLERFHSFEAHSDYVRCVAVHPTQP--FLL 115
           +  A        + T S D  + +F     T +   +   H   V  V     +    L 
Sbjct: 14  IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 73

Query: 116 TSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQL- 172
           + S D  + +W  E   W+   V   H+  V  +   P +       AS D  V V +  
Sbjct: 74  SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133

Query: 173 -GSASPNFTLEGHEKGVNCV-----------DYYHGGDKPYLISGADDRLVKIWDYQNKT 220
               +    ++ H  GVN             ++    +    ++G  D LVKIW Y +  
Sbjct: 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193

Query: 221 ----CVQTLE 226
                  TLE
Sbjct: 194 QTYVLESTLE 203

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  105 bits (265), Expect = 4e-27
 Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 34/220 (15%)

Query: 37  GHVHVWNHE--TNQNVKSFEVCDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNT--LE 90
             + ++  E  T++ + +    + PV    +   K    + + S D +V ++        
Sbjct: 33  KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 92

Query: 91  RFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNW-EKAWACQQVFEGHTHYVMQ 147
           +      HS  V  V   P +    LL +S D  + +  + E       + + H   V  
Sbjct: 93  QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 152

Query: 148 IVINP------------KDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCV 191
               P            K++  F +   D  VK+W+  S +  +    TLEGH   V  V
Sbjct: 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212

Query: 192 ----DYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTL 225
                        YL S + DR   IW   N+     +TL
Sbjct: 213 AWSPTVLLR---SYLASVSQDRTCIIWTQDNEQGPWKKTL 249

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  105 bits (263), Expect = 7e-27
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 10/142 (7%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVIN 151
               AH++ +    +      L T S D  IK++  E           GH   V ++   
Sbjct: 5   VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64

Query: 152 P-KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGA 206
             K     AS S D  V +W+   G  S       H   VN V +  +  G  P L+  +
Sbjct: 65  HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--PLLLVAS 122

Query: 207 DDRLVKIWDYQ--NKTCVQTLE 226
            D  V + +++    T    ++
Sbjct: 123 SDGKVSVVEFKENGTTSPIIID 144

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  103 bits (259), Expect = 3e-26
 Identities = 47/224 (20%), Positives = 75/224 (33%), Gaps = 41/224 (18%)

Query: 30  MLAS-LYNGHVHVWNHETNQNV--KSFEVCDLPVRAAKFVPRKN-------------WIV 73
           +L     +G V V   + N        +   + V +A + P                  V
Sbjct: 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 176

Query: 74  TGSDDMQVCVFNYN----TLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLW 126
           TG  D  V ++ YN    T     + E HSD+VR VA  PT     +L + S D    +W
Sbjct: 177 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236

Query: 127 NWE-KAWACQQV---FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
             + +    ++     E     + +   +    N  A +  D  V +W+         LE
Sbjct: 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE-------NLE 288

Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           G  +    V    GG      SG      K +D   +  +  L 
Sbjct: 289 GKWEPAGEVHQGGGG------SGGGGATSKEFDGPCQNEIDLLF 326

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNC 190
           +   +   H   +   V++       A+ S D+T+K++++   +     TL GHE  V  
Sbjct: 2   SMVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60

Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ--TLE 226
           VD+ H      L S + D  V IW  +N    Q     
Sbjct: 61  VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA 98

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 32/203 (15%)

Query: 39  VHVWNHETNQNVKSFEVCDL-----PVRAAKFVP---RKNWIVTGSDDMQVCVFNYNT-- 88
           V +W + ++          L      VR   + P    ++++ + S D    ++  +   
Sbjct: 184 VKIWKYNSDAQTYV-LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242

Query: 89  ---LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
               +     E   D +   +   +   L  S  D  + LW        +   E H    
Sbjct: 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGG 302

Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISG 205
                         S     T K +     +    L                ++ +  S 
Sbjct: 303 -------------GSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASY 349

Query: 206 -----ADDRLVKIWDYQNKTCVQ 223
                +   ++   D   K+ V 
Sbjct: 350 TFAKFSTGSMLLTKDIVGKSGVS 372

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  110 bits (276), Expect = 3e-29
 Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFN--YNTLERFHSFEAHSDYVRCVAV-HPTQPF--- 113
           +  A        + T S D  + +F     T +   +   H   V  V   HP   F   
Sbjct: 12  IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--KFGTI 69

Query: 114 LLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQ 171
           L + S D  + +W  E   W+   V   H+  V  +   P +       AS D  V V +
Sbjct: 70  LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129

Query: 172 L--GSASPNFTLEGHEKGVNCV-----------DYYHGGDKPYLISGADDRLVKIWDYQN 218
                 +    ++ H  GVN             ++    +    ++G  D LVKIW Y +
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189

Query: 219 KT----CVQTLE 226
                    TLE
Sbjct: 190 DAQTYVLESTLE 201

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  107 bits (269), Expect = 3e-28
 Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 33/228 (14%)

Query: 30  MLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVF 84
           +LAS  Y+G V +W  E  +   +    V    V + ++ P +    ++  S D +V V 
Sbjct: 69  ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV 128

Query: 85  NYNT--LERFHSFEAHSDYVRCVAVHPTQP-------------FLLTSSDDMLIKLWNWE 129
            +           +AH+  V   +  P                  +T   D L+K+W + 
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188

Query: 130 ---KAWACQQVFEGHTHYVMQIVINP--KDNNTFASASLDRTVKVWQLGSASPNF----- 179
              + +  +   EGH+ +V  +  +P     +  AS S DRT  +W   +    +     
Sbjct: 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL 248

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLE 226
             E     +    +   G    L     D  V +W            E
Sbjct: 249 KEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWKENLEGKWEPAGE 294

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  105 bits (263), Expect = 2e-27
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVI-NP 152
             AH++ +    +      + T S D  IK++  E           GH   V ++   +P
Sbjct: 5   ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64

Query: 153 KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGADD 208
           K     AS S D  V +W+   G  S       H   VN V +  +  G  P L+  + D
Sbjct: 65  KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--PMLLVASSD 122

Query: 209 RLVKIWDYQ--NKTCVQTLE 226
             V + +++    T    ++
Sbjct: 123 GKVSVVEFKENGTTSPIIID 142

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  103 bits (260), Expect = 5e-27
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 34/220 (15%)

Query: 37  GHVHVWN--HETNQNVKSFEVCDLPVRAAKFVPRK--NWIVTGSDDMQVCVFNYNT--LE 90
             + ++    ET++ + +    + PV    +   K    + + S D +V ++        
Sbjct: 31  KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90

Query: 91  RFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNW-EKAWACQQVFEGHTHYVMQ 147
           +      HS  V  V   P +    LL +S D  + +  + E       + + H   V  
Sbjct: 91  QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150

Query: 148 IVINP------------KDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNCV 191
               P            K++  F +   D  VK+W+  S +  +    TLEGH   V  V
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210

Query: 192 ----DYYHGGDKPYLISGADDRLVKIWDYQNKT--CVQTL 225
                        Y+ S + DR   IW   N+     +TL
Sbjct: 211 AWSPTVLLRS---YMASVSQDRTCIIWTQDNEQGPWKKTL 247

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 80.0 bits (198), Expect = 5e-18
 Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 28/176 (15%)

Query: 37  GHVHVWNHETNQNV--KSFEVCDLPVRAAKFVPRKN-------------WIVTGSDDMQV 81
           G V V   + N        +   + V +A + P                  VTG  D  V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182

Query: 82  CVFNYN----TLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKA--- 131
            ++ YN    T     + E HSD+VR VA  PT     ++ + S D    +W  +     
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242

Query: 132 -WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL-GSASPNFTLEGHE 185
                   E     + +   +    N  A +  D  V +W+           E H+
Sbjct: 243 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQ 297

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDY 193
            +   H   +   V++       A+ S D+T+K++++   +     TL GHE  V  VD+
Sbjct: 3   VIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61

Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
            H      L S + D  V IW  +N    Q
Sbjct: 62  AHPKFGTILASCSYDGKVMIWKEENGRWSQ 91

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  108 bits (272), Expect = 2e-28
 Identities = 24/201 (11%), Positives = 53/201 (26%), Gaps = 37/201 (18%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNT----LERFHSFEAHSDYVRCVAVHPTQP--F 113
           V    +      + T S D  + VF  +      E   S+ AH   +  +     +    
Sbjct: 14  VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI 73

Query: 114 LLTSSDDMLIKLWNWE--------KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLD 164
           + ++S D  +KLW  +        + W            +  +   P       A    D
Sbjct: 74  IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133

Query: 165 RTVKVW-------------QLGSASPNFTLEGHEKGVNCV----DYYHGGDKPYLISGAD 207
             ++++                    +     H +   C+      +       L   A 
Sbjct: 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP---EKLAVSAL 190

Query: 208 DRLVKIWDYQNKT--CVQTLE 226
           ++ +     ++        L 
Sbjct: 191 EQAIIYQRGKDGKLHVAAKLP 211

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  104 bits (261), Expect = 1e-26
 Identities = 26/223 (11%), Positives = 59/223 (26%), Gaps = 37/223 (16%)

Query: 39  VHVWNHETNQNVKSFEVCDL---------PVRAAKFVPRKN--WIVTGSDDMQVCVFNYN 87
           V +W  + +Q   S    +           + + KF P      +    +D  + +++  
Sbjct: 83  VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142

Query: 88  TLERFH-------------SFEAHSDYVRCVAVHP---TQPFLLTSSDDMLIKLWNWE-K 130
                                  H     C++  P   +   L  S+ +  I     +  
Sbjct: 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG 202

Query: 131 AWACQQVFEGHTHYVMQIVINP---KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
                    GH   +  I   P   +     A+   D  ++++++        L   E  
Sbjct: 203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI--TEKLSPLASEESL 260

Query: 188 VNCVDYYHGGDKPYLISGADD----RLVKIWDYQNKTCVQTLE 226
            N   + +  D      G  D       ++        +   +
Sbjct: 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  100 bits (250), Expect = 3e-25
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---AWACQQVFEGHTHYVMQIVINP-K 153
           H D V  V        + T S D  IK++  +K    W     +  H   ++ I     +
Sbjct: 10  HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69

Query: 154 DNNTFASASLDRTVKVWQLGSASPN---------FTLEGHEKGVNCVDY--YHGGDKPYL 202
                ASAS D+TVK+W+                 TL   +  +  V +   H G    L
Sbjct: 70  YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG--LKL 127

Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
               +D +++++D    + +++  
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWT 151

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 94.7 bits (236), Expect = 3e-23
 Identities = 27/229 (11%), Positives = 65/229 (28%), Gaps = 39/229 (17%)

Query: 37  GHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVFNYNT-- 88
            H+ V+  + + +      S+   D  + A  +   +    I + S D  V ++  +   
Sbjct: 33  QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92

Query: 89  -------LERFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKLWNWE---------- 129
                    +  +       +  V   P      L    +D +++L++            
Sbjct: 93  EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL 152

Query: 130 --KAWACQQVFEGHTHYVMQIVINP--KDNNTFASASLDRTVKVWQL--GSASPNFTLEG 183
             +          H      +   P        A ++L++ +   +   G       L G
Sbjct: 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG 212

Query: 184 HEKGVNCV----DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           H+  +  +              + +G  D  ++I+    K      E  
Sbjct: 213 HKSLIRSISWAPSIGRWYQ--LIATGCKDGRIRIFKITEKLSPLASEES 259

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 32/216 (14%)

Query: 37  GHVHVWNHETNQNVKSFEVCDL-------------PVRAAKFVP---RKNWIVTGSDDMQ 80
           G + +++     +++S+ +                      + P       +   + +  
Sbjct: 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193

Query: 81  VCVFNYNT--LERFHSFEAHSDYVRCVAVHP----TQPFLLTSSDDMLIKLWNWEKAWAC 134
           +         L        H   +R ++  P        + T   D  I+++        
Sbjct: 194 IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK---ITEK 250

Query: 135 QQVFEGHTHYVMQIVINP-KDNNTFASASLD----RTVKVWQLGSASPNFTLEGHEKGVN 189
                         + +   D +  A    D       ++            + H   V 
Sbjct: 251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310

Query: 190 CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
            V +   G    L S  DD  V++W        + +
Sbjct: 311 SVSWNLTGT--ILSSAGDDGKVRLWKATYSNEFKCM 344

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 135 QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----TLEGHEKGVNC 190
           Q    GH   V  +V +       A+ S D+ +KV++L   + N+    +   H+  +  
Sbjct: 4   QPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA 62

Query: 191 VDYYHGGDKPYLISGADDRLVKIWD 215
           +D+        + S + D+ VK+W+
Sbjct: 63  IDWASPEYGRIIASASYDKTVKLWE 87

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 69.2 bits (170), Expect = 5e-14
 Identities = 17/159 (10%), Positives = 43/159 (27%), Gaps = 16/159 (10%)

Query: 39  VHVWNHETNQN--VKSFEVCDLPVRAAKFVP----RKNWIVTGSDDMQVCVFNYNTLERF 92
           +     +  +             +R+  + P        I TG  D ++ +F      + 
Sbjct: 194 IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE--KL 251

Query: 93  HSFEAHSDYVRCVAVHPTQPF------LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
               +            +            S+ +   +L +  +        + H   V 
Sbjct: 252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVW 310

Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE 185
            +  N       +SA  D  V++W+   ++    +    
Sbjct: 311 SVSWNL-TGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 348

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 6/111 (5%)

Query: 37  GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ----VCVFNYNTLERF 92
           G + ++      +  + E               +    G  D        + +   +E  
Sbjct: 240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW--NWEKAWACQQVFEGH 141
              + H+  V  V+ + T   L ++ DD  ++LW   +   + C  V    
Sbjct: 300 SEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  108 bits (273), Expect = 3e-28
 Identities = 29/215 (13%), Positives = 66/215 (30%), Gaps = 31/215 (14%)

Query: 39  VHVWNHETNQNVKSFEV-------------CDLPVRAAKFVPRKNWIVTGSDDMQVCVFN 85
           ++++  E +                            A +  +  +I+ G  D ++  ++
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203

Query: 86  YNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
            +   E   S + H   +  +   P   + +TSS D    L +        + +E     
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYETDCP- 261

Query: 145 VMQIVINP-------------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
           +   VI P             KD  T ++       + +          ++GH   +N V
Sbjct: 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV 321

Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                G      SG +D  +++  ++        +
Sbjct: 322 AISPQGT--SYASGGEDGFIRLHHFEKSYFDFKYD 354

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  107 bits (270), Expect = 7e-28
 Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 24/207 (11%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAH 98
            +++   ++         + P+   K+    + + + S D    V+     ER  + + H
Sbjct: 14  ENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH 73

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           +  +  + V     + +T S D  IKLW+      C   ++     V ++  +P   N F
Sbjct: 74  TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-QCVATWKSPV-PVKRVEFSP-CGNYF 130

Query: 159 ASASLDR-----TVKVWQL-----------GSASPNFTLEGHEKG--VNCVDYYHGGDKP 200
            +   +      ++ ++++            S  P   +  HE         +   G   
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-- 188

Query: 201 YLISGADDRLVKIWDYQN-KTCVQTLE 226
           Y+I+G  D  +  +D  N    V +++
Sbjct: 189 YIIAGHKDGKISKYDVSNNYEYVDSID 215

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  107 bits (269), Expect = 8e-28
 Identities = 24/218 (11%), Positives = 65/218 (29%), Gaps = 33/218 (15%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ-----VCVFNYNTLERFH 93
           + +W+    Q V +++   +PV+  +F P  N+ +   D++      + ++        H
Sbjct: 98  IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156

Query: 94  SFEAHS-------------DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG 140
                S             D            +++    D  I  ++    +      + 
Sbjct: 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216

Query: 141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV----DYYH- 195
           H   +  +  +P D   F ++S D    +  + +       E     +N           
Sbjct: 217 HEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDC-PLNTAVITPLKEFI 274

Query: 196 ---GGDKPYLI----SGADDRLVKIWDYQNKTCVQTLE 226
              GG +   +    +       + +    +  +  ++
Sbjct: 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 96.9 bits (242), Expect = 6e-24
 Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 10/162 (6%)

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
                      ++   +  +      H   +  V  +     L + S D    +W     
Sbjct: 5   HHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG 64

Query: 132 WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
                  +GHT  +  I ++        + S D ++K+W + +     T +     V  V
Sbjct: 65  -ERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRV 121

Query: 192 DYYHGGDKPYLISGADDRL-----VKIWDYQNKTCVQTLESG 228
           ++   G+  Y ++  D+ +     + I++ +  +    L   
Sbjct: 122 EFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKV 161

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 92.7 bits (231), Expect = 2e-22
 Identities = 21/165 (12%), Positives = 59/165 (35%), Gaps = 18/165 (10%)

Query: 35  YNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93
            +G +  ++   N     S ++ +  +   +F P   + +T S D    + + +TL+   
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254

Query: 94  SFEAHSDYVRCVAVHPTQPFLL--------------TSSDDMLIKLWNWEKAWACQQVFE 139
            +E     +    + P + F++               +      + ++ +         +
Sbjct: 255 KYETDCP-LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH-KIFEEEIGRVQ 312

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
           GH   +  + I+P    ++AS   D  +++     +  +F  +  
Sbjct: 313 GHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSYFDFKYDVE 356

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 68.4 bits (168), Expect = 9e-14
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
           ++           ++  GS      L GHE+ +  V Y   GD   L S + D    +W 
Sbjct: 3   SSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGD--LLFSCSKDSSASVWY 60

Query: 216 YQNKTCVQTLE 226
             N   + TL+
Sbjct: 61  SLNGERLGTLD 71

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 16/120 (13%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS--------------DDMQVCVF 84
             + +  T Q +K +E  D P+  A   P K +I+ G                  +   +
Sbjct: 242 SFLVDVSTLQVLKKYET-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300

Query: 85  NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY 144
           +    E     + H   +  VA+ P      +  +D  I+L ++EK++     ++     
Sbjct: 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY-FDFKYDVEKAA 359

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score =  107 bits (269), Expect = 8e-28
 Identities = 25/216 (11%), Positives = 75/216 (34%), Gaps = 27/216 (12%)

Query: 36  NGHVHVWNHETNQNVKSFEV-CDLPVRAAKFV---PRKNWIVTGSDDMQVCVFNYNTLER 91
            G + ++  +        E+    P++   F     ++ ++ TG     + ++N    E 
Sbjct: 43  TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM 102

Query: 92  F-HSFEAHSDYVRCV------AVHPTQPFLLTSSDDMLIKLWNW---EKAWACQQVFEGH 141
             +S + H + +  +       +    P ++T S D  +K+W+    +   A  +  +G 
Sbjct: 103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162

Query: 142 THY-----VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH- 195
                         N  +     +   +  +K++ L + +        + GV  +++   
Sbjct: 163 NKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRK 220

Query: 196 GGDKPYLISGADDRLVKIWDYQNK-----TCVQTLE 226
                 L++ + +    ++D + +         + +
Sbjct: 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK 256

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 99.0 bits (247), Expect = 9e-25
 Identities = 28/252 (11%), Positives = 71/252 (28%), Gaps = 45/252 (17%)

Query: 9   RKLTARSDRVKCCDLHPTEPW-----MLAS-LYNGHVHVWNHETNQNVKSF--------- 53
             +    + +   D             + +   +G V VW+     +  +          
Sbjct: 105 YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164

Query: 54  EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP---T 110
             C        +   +  +  G D+  + +F+              + V  +       +
Sbjct: 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MALRWETNIKNGVCSLEFDRKDIS 223

Query: 111 QPFLLTSSDDMLIKLWNWEKAWA----CQQVFEGHTHYVMQIVINPKDNNTFASASLDRT 166
              L+ +S +    +++               + H   V Q+   P++   F +A     
Sbjct: 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG 283

Query: 167 VKVWQL-------------------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLI-SGA 206
           + +W+                    GS S    +    + ++ +D+    DK  L    +
Sbjct: 284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW--SPDKRGLCVCSS 341

Query: 207 DDRLVKIWDYQN 218
            D+ V++     
Sbjct: 342 FDQTVRVLIVTK 353

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 15/146 (10%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTS----SDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
           H  +  +  V      P     +T         +I+L+  +     + + E      ++ 
Sbjct: 12  HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-DLKLLREIEKAKPIKC 70

Query: 149 V----INPKDNNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGG----DK 199
                 +       A+      + +W L +   P ++++GH++ +N +D   G       
Sbjct: 71  GTFGATSL-QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA 129

Query: 200 PYLISGADDRLVKIWDYQNKTCVQTL 225
           P +++G+ D  VK+WD + K      
Sbjct: 130 PEIVTGSRDGTVKVWDPRQKDDPVAN 155

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 85.9 bits (213), Expect = 5e-20
 Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 22/187 (11%)

Query: 60  VRAAKFVPRKNWIVT----GSDDMQVCVFNYNT--LERFHSFEAHSDYVRCV---AVHPT 110
           V   K+VP     VT          + ++      L+     E  +  ++C    A    
Sbjct: 21  VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE-KAKPIKCGTFGATSLQ 79

Query: 111 QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-----DNNTFASASLDR 165
           Q +L T      + +WN E         +GH   +  I                + S D 
Sbjct: 80  QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139

Query: 166 TVKVWQLGSASPNF----TLEGHEKG-VNCVDYYHGG--DKPYLISGADDRLVKIWDYQN 218
           TVKVW              ++G  K     V + +    ++  + +G D+  +K++D +N
Sbjct: 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199

Query: 219 KTCVQTL 225
                  
Sbjct: 200 MALRWET 206

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFAS----ASLDRTVKVWQLGSASPNFTLE-G 183
           EK      + +G  + V      P  +  F +    A     ++++++         E  
Sbjct: 5   EKPQIIAHIQKGFNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE 63

Query: 184 HEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQN-KTCVQTLE 226
             K + C  +      + YL +G     + IW+ +  +  V +++
Sbjct: 64  KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK 108

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score =  107 bits (269), Expect = 1e-27
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 59  PVRAAKFVPR-KNWIVTGSDDMQVCVFN-------YNTLERFHSFEAHSDYVRCVAVHPT 110
           PV    + P   N I +GS+D  V V+            E   + E H+  V  VA HPT
Sbjct: 83  PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT 142

Query: 111 -QPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRTV 167
            Q  LL++  D +I +W+     A       + H   +  +  +  D     ++  D+ V
Sbjct: 143 AQNVLLSAGCDNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRV 200

Query: 168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTCVQT 224
           +V +    +     +   +G   V      +   L +G     +R V +WD ++     +
Sbjct: 201 RVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260

Query: 225 LES 227
           L+ 
Sbjct: 261 LQE 263

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 97.1 bits (242), Expect = 9e-24
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 13/170 (7%)

Query: 70  NWIVTGSDDMQVCVFNY--NTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLW 126
               +G     V          +       H+  V  +A  P    ++ S S+D  + +W
Sbjct: 50  ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109

Query: 127 N------WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
                             EGHT  V  +  +P   N   SA  D  + VW +G+ +   T
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169

Query: 181 L--EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           L  + H   +  VD+   G    + +   D+ V++ + +  T V   +  
Sbjct: 170 LGPDVHPDTIYSVDWSRDGA--LICTSCRDKRVRVIEPRKGTVVAEKDRP 217

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 20/236 (8%)

Query: 9   RKLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLP-------V 60
             +   +  V      P    ++AS   +  V VW       V       +        V
Sbjct: 75  PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134

Query: 61  RAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFHSF--EAHSDYVRCVAVHPTQPFLLTS 117
               + P  +N +++   D  + V++  T     +   + H D +  V        + TS
Sbjct: 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194

Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTH-YVMQIVINPKDNNTFAS---ASLDRTVKVWQLG 173
             D  +++    K     +    H     +  V    +     +      +R V +W   
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTK 253

Query: 174 SASPNFTLE--GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLE 226
                 +L+      GV    +         + G  D  ++ ++  +    +  L 
Sbjct: 254 HLEEPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLS 308

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 87.8 bits (218), Expect = 2e-20
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 10/138 (7%)

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTHYVMQIVINPKD 154
                   V           S     + L   +  +      +  GHT  V+ I   P +
Sbjct: 34  TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN 93

Query: 155 NNTFASASLDRTVKVWQL-------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD 207
           +N  AS S D TV VW++           P  TLEGH K V  V ++    +  L+S   
Sbjct: 94  DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGC 152

Query: 208 DRLVKIWDYQNKTCVQTL 225
           D ++ +WD      V TL
Sbjct: 153 DNVILVWDVGTGAAVLTL 170

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 80.5 bits (199), Expect = 6e-18
 Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 10  KLTARSDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLP--VRAAKFV 66
            L   + RV     HPT   +L S   +  + VW+  T   V +      P  + +  + 
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185

Query: 67  PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRC--VAVHPTQPFLLT---SSDDM 121
                I T   D +V V            +   +  R            L T      + 
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245

Query: 122 LIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
            + LW+  K        +    +  V+    +P  N  +     D +++ +++ S +P  
Sbjct: 246 QVALWD-TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL 304

Query: 180 -TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
             L       +     +   +   +      + + +    + C  
Sbjct: 305 HYLSMFSSKESQRGMGYMPKR--GLEVNKCEIARFYKLHERKCEP 347

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  108 bits (271), Expect = 2e-27
 Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYN--TLERFHSFEAHSDYVRCVAV-HPTQPF--- 113
           +  A        + T S D  + +F     T +   +   H   V  V   HP   F   
Sbjct: 12  IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--KFGTI 69

Query: 114 LLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVINPKDN-NTFASASLDRTVKVWQ 171
           L + S D  + +W  E   W+   V   H+  V  +   P +       AS D  V V +
Sbjct: 70  LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129

Query: 172 L--GSASPNFTLEGHEKGVNCV-----------DYYHGGDKPYLISGADDRLVKIWDYQN 218
                 +    ++ H  GVN             ++    +    ++G  D LVKIW Y +
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189

Query: 219 KT----CVQTLE 226
                    TLE
Sbjct: 190 DAQTYVLESTLE 201

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  107 bits (268), Expect = 5e-27
 Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 32/218 (14%)

Query: 30  MLAS-LYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQVCVF 84
           +LAS  Y+G V +W  E  +   +    V    V + ++ P +    ++  S D +V V 
Sbjct: 69  ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128

Query: 85  NYNT--LERFHSFEAHSDYVRCVAVHPTQP-------------FLLTSSDDMLIKLWNWE 129
            +           +AH+  V   +  P                  +T   D L+K+W + 
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188

Query: 130 ---KAWACQQVFEGHTHYVMQIVINP--KDNNTFASASLDRTVKVWQLGSASPNF----- 179
              + +  +   EGH+ +V  +  +P     +  AS S DRT  +W   +    +     
Sbjct: 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 248

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
             E     +    +   G    L     D  V +W   
Sbjct: 249 KEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWKEN 284

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  105 bits (262), Expect = 3e-26
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVI-NP 152
             AH++ +    +      L T S D  IK++  E           GH   V ++   +P
Sbjct: 5   ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64

Query: 153 KDNNTFASASLDRTVKVWQL--GSASPNFTLEGHEKGVNCVDY--YHGGDKPYLISGADD 208
           K     AS S D  V +W+   G  S       H   VN V +  +  G  P L+  + D
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--PLLLVASSD 122

Query: 209 RLVKIWDYQ--NKTCVQTLE 226
             V + +++    T    ++
Sbjct: 123 GKVSVVEFKENGTTSPIIID 142

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  105 bits (262), Expect = 4e-26
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 24/180 (13%)

Query: 70  NWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQP--FLLTSSDDMLIKL 125
             + + S D +V ++        +      HS  V  V   P +    LL +S D  + +
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127

Query: 126 WNW-EKAWACQQVFEGHTHYVMQIVINP------------KDNNTFASASLDRTVKVWQL 172
             + E       + + H   V      P            K++  F +   D  VK+W+ 
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187

Query: 173 GSASPNF----TLEGHEKGVNCVDYYH-GGDKPYLISGADDRLVKIWDYQNKT--CVQTL 225
            S +  +    TLEGH   V  V +      + YL S + DR   IW   N+     +TL
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 247

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 75.4 bits (185), Expect = 5e-16
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDY 193
            +   H   +   V++       A+ S D+T+K++++   +     TL GHE  V  VD+
Sbjct: 3   VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61

Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
            H      L S + D  V IW  +N    Q
Sbjct: 62  AHPKFGTILASCSYDGKVLIWKEENGRWSQ 91

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 64.2 bits (156), Expect = 3e-12
 Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 27/159 (16%)

Query: 39  VHVWNHETNQNVKSFEVCDL-----PVRAAKFVP---RKNWIVTGSDDMQVCVFNYNT-- 88
           V +W + ++          L      VR   + P    ++++ + S D    ++  +   
Sbjct: 182 VKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240

Query: 89  ---LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV 145
               +     E   D +   +   +   L  S  D  + LW        +   E H    
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGG 300

Query: 146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
                         S     T K +     +    L   
Sbjct: 301 -------------GSGGGGATSKEFDGPCQNEIDLLFSE 326

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score =  106 bits (266), Expect = 4e-27
 Identities = 28/235 (11%), Positives = 72/235 (30%), Gaps = 37/235 (15%)

Query: 10  KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPR 68
           + + R   V    +      ++     G + +W+   N  ++S+   D  P+   +    
Sbjct: 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268

Query: 69  KN----WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ------------- 111
                  +V GS    + ++N+      ++F    +        P +             
Sbjct: 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328

Query: 112 ------------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA 159
                         LLT      I +++  +  +  +     + +    +       T  
Sbjct: 329 LNALSTISVSNDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIP------TQV 381

Query: 160 SASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW 214
           +A+L   ++  +  S         H   +N +      + P L++  +  L+ I+
Sbjct: 382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score =  102 bits (256), Expect = 1e-25
 Identities = 26/256 (10%), Positives = 68/256 (26%), Gaps = 40/256 (15%)

Query: 3   LRLDIKRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCD--LP 59
           +R    +        V+       E  +L +L     V +++  T + ++  E       
Sbjct: 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA 216

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA-HSDYVRCVAVHPTQP----FL 114
           V +         ++ G+    + +++        S+       +  V V          +
Sbjct: 217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276

Query: 115 LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP---------------------- 152
           +  S    + +WN+ K   CQ  F             P                      
Sbjct: 277 VGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335

Query: 153 --KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
              ++    +     ++ ++ L   S +  +    +  +          P  ++     L
Sbjct: 336 SVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVF-------IPTQVTANLTML 388

Query: 211 VKIWDYQNKTCVQTLE 226
           ++     +   V    
Sbjct: 389 LRKMKRTSTHSVDDSL 404

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score =  101 bits (252), Expect = 5e-25
 Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 29/213 (13%)

Query: 41  VWNHETNQNVKSFEVCDL-----PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE----- 90
           +WN +     + +           V     +P  +     S D Q+ V   N  +     
Sbjct: 90  IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149

Query: 91  -----------RFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
                         +F  +   VR  A     +  L+  ++   + +++  +     Q+ 
Sbjct: 150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI-RTLERLQII 208

Query: 139 EGHTHY--VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG-VNCVDY-- 193
           E    +  V  I I+  +       +    + +W +       +    +   +  V+   
Sbjct: 209 ENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267

Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           ++G +   ++ G+    + IW++    C     
Sbjct: 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI 300

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 99.9 bits (249), Expect = 1e-24
 Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 59  PVRAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFHSFEA-----HSDYVRCVAVHPTQP 112
            + ++   P    +++TGSD   + ++N   +     + +      S  V  + + P   
Sbjct: 65  SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124

Query: 113 FLLTSSDDMLIKLWNWE--------KAWACQQV-------FEGHTHYVMQIVINPKDNNT 157
               SS D  I +            K   C+ +       F  + + V       ++ + 
Sbjct: 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184

Query: 158 FASASLDRTVKVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
             + +    V ++ + +      +E       V+ +          LI G    ++ IWD
Sbjct: 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC--VLILGTTRGIIDIWD 242

Query: 216 YQNKTCVQTLESG 228
            +    +++   G
Sbjct: 243 IRFNVLIRSWSFG 255

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 14/150 (9%), Positives = 34/150 (22%), Gaps = 18/150 (12%)

Query: 93  HSFEAHSDYVR----CVAVHPT----QPFLLTSSDDMLIKLWNWEKAWACQQVF-EGHTH 143
           H  E   + +        + P     + F           + N            E   +
Sbjct: 7   HHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPNMGNLR--GKLIATLMENEPN 64

Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-----GHEKGVNCVDYYHGGD 198
            +    ++P +     + S    +K+W L                    V  +      D
Sbjct: 65  SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124

Query: 199 KPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                  + D  + +    +      ++  
Sbjct: 125 --AFAVSSKDGQIIVLKVNHYQQESEVKFL 152

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 97.9 bits (244), Expect = 3e-24
 Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 31/172 (18%)

Query: 72  IVTGSDDMQVCVFNYNT------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM---L 122
           I TG ++  V +   +T       E  HS   +S+ +R V   P    L  + D      
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259

Query: 123 IKLWN------------WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
           I L+                +         H+ +VM +  N     T  SA  D  ++ W
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFW 318

Query: 171 QLGSASPNFTLEGHEKGV----NCVDYYHGGDKPYLISGADD---RLVKIWD 215
            + +     TL  H   +    + +     GD   L          L K W 
Sbjct: 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGD--SLAEPGVFDVKFLKKGWR 368

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 97.1 bits (242), Expect = 7e-24
 Identities = 22/230 (9%), Positives = 61/230 (26%), Gaps = 46/230 (20%)

Query: 39  VHVWNHETNQNVKSFEVCDLPVRAAKFVPRK---NWIVTGSDDMQVCVFNYNTL------ 89
             V   + +      +              +   + +V         ++ ++        
Sbjct: 105 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164

Query: 90  ------------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-----KAW 132
                           S    S +   V +      + T  ++  +++           +
Sbjct: 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF 223

Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT---VKVWQLGSASPNFTLE------- 182
             Q     +++ +  +  +P   +  A A    +   + +++        +L        
Sbjct: 224 ESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282

Query: 183 ------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                  H   V  + +   G+   L S   D  ++ WD + K  + TL 
Sbjct: 283 ASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLN 330

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 93.7 bits (233), Expect = 2e-22
 Identities = 16/185 (8%), Positives = 47/185 (25%), Gaps = 33/185 (17%)

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNW 128
                +D    V            + HS +         +     L+ +       +W +
Sbjct: 96  YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155

Query: 129 E-----------------KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW- 170
                             +     +     + +   + I+       A+   + TV++  
Sbjct: 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 213

Query: 171 -----QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTCV 222
                 L +     ++  +   +  V +   G    L    D      + +++ +    +
Sbjct: 214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQG--SLLAIAHDSNSFGCITLYETEFGERI 271

Query: 223 QTLES 227
            +L  
Sbjct: 272 GSLSV 276

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 77.9 bits (192), Expect = 6e-17
 Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 51/214 (23%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFNYNT------LERFHSFEAHS-------------- 99
           + +       ++ V+ S D  + V++          ++ +S   H               
Sbjct: 19  IFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIER 76

Query: 100 -----DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
                  V   +      F   + +D   K+   EK        + H+ + ++   +   
Sbjct: 77  DAFELCLVATTSFSGDLLFYRITREDETKKVIF-EKLDLLDSDMKKHSFWALKWGASNDR 135

Query: 155 NN--TFASASLDRTVKVWQL---GSASPNF---------------TLEGHEKGVNCVDYY 194
                  +  +  T  +W+       S +                +     +    VD  
Sbjct: 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 195

Query: 195 HGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
             G    + +G ++  V+I +      +   ES 
Sbjct: 196 ERG---LIATGFNNGTVQISELSTLRPLYNFESQ 226

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 75.2 bits (185), Expect = 5e-16
 Identities = 27/206 (13%), Positives = 62/206 (30%), Gaps = 51/206 (24%)

Query: 39  VHVWNHETNQNVKSFEVCDL------PVRAAKFVPRKNWIVTGSDDM---QVCVFNYNTL 89
           V +    T + + +FE           +R+ KF P+ + +    D      + ++     
Sbjct: 209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268

Query: 90  ERFHSFE-------------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
           ER  S               AHS +V  ++ + +   L ++  D  ++ W+ +       
Sbjct: 269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERIT 327

Query: 137 VFEGHTHYVMQ----IVINPKDNNTFASASLD---RTVKVWQLGSASPNFTLEGHEKGVN 189
               H   +      + ++    ++ A   +       K W+ G  +             
Sbjct: 328 TLNMHCDDIEIEEDILAVDE-HGDSLAEPGVFDVKFLKKGWRSGMGADLNES-------- 378

Query: 190 CVDYYHGGDKPYLISGADDRLVKIWD 215
                       L     DR ++ + 
Sbjct: 379 ------------LCCVCLDRSIRWFR 392

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 69.8 bits (171), Expect = 3e-14
 Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 96  EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
           +AH   +  V+   +    ++ S D  +K+W+ +         + ++H+V +  ++  D 
Sbjct: 13  KAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 70

Query: 156 N-----------------------TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV- 191
                                    +     D T KV        +  ++ H        
Sbjct: 71  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 130

Query: 192 ---DYYHGGDKPYLISGADDRLVKIWD 215
              D         L++        IW 
Sbjct: 131 ASNDRLLSH---RLVATDVKGTTYIWK 154

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 11/116 (9%), Positives = 28/116 (24%), Gaps = 26/116 (22%)

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYY 194
              + H   +  +           S S D  +KVW           +  +   V+    +
Sbjct: 10  NAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 66

Query: 195 H----------GGDKPYLISGA------------DDRLVKIWDYQNKTCVQTLESG 228
           H            +   + + +            +D   K+   +       ++  
Sbjct: 67  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 122

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 36/152 (23%)

Query: 37  GHVHVWNHETNQNVKSFEVCDLP-------------VRAAKFVPRKNWIVTGSDDMQVCV 83
           G + ++  E  + + S  V                 V +  F      + +   D ++  
Sbjct: 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317

Query: 84  FNYNTLERFHSFEAHSDYVR----CVAVHPTQPFLLT-SSDDMLIKLWNWEKAWACQQVF 138
           ++  T ER  +   H D +      +AV      L      D+      W          
Sbjct: 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW---------- 367

Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVW 170
                   +  +    N +     LDR+++ +
Sbjct: 368 --------RSGMGADLNESLCCVCLDRSIRWF 391

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 97.2 bits (242), Expect = 4e-24
 Identities = 21/187 (11%), Positives = 54/187 (28%), Gaps = 12/187 (6%)

Query: 51  KSFEVCDLP---VRAAKFVPRKNWIVTGSDDMQVCVFNYNT---LERFHSFEAHSDYVRC 104
           +  ++   P   +   K +P K+ ++  S D  + V+ ++             +   + C
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 105 VAVHPTQPFLLTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL 163
                     +   +    I   +   +    Q    +   +    I    ++   +AS 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGS-PSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 164 DRTVKVWQLGSASPNFT----LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK 219
           D  ++V    +          L  +   V    +    +   LI G ++  V+ +     
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 220 TCVQTLE 226
                  
Sbjct: 181 EDDNGTI 187

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 93.0 bits (231), Expect = 1e-22
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 96  EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPK 153
           +A  DY+  + + P++  LL +S D  + ++ ++       + +   + H ++       
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
            +      ++   +    L  +     L  +E  +        GD   LI+ + D L+++
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEV 126

Query: 214 WDYQNKTCVQTLESG 228
            D +N          
Sbjct: 127 IDPRNYGDGVIAVKN 141

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 87.2 bits (216), Expect = 2e-20
 Identities = 26/239 (10%), Positives = 77/239 (32%), Gaps = 27/239 (11%)

Query: 15  SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-PRKNWI 72
              + CC+        +      G +   +   + + ++    +  +   +      + +
Sbjct: 56  KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115

Query: 73  VTGSDDMQVCVFNYNT----LERFHSFEAHSDYV--RCVAVHPTQPFLLTSSDDMLIKLW 126
           +  S D  + V +       +    +  +++  V  +   +      L+   ++  ++ +
Sbjct: 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175

Query: 127 NWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASLDRTVKVW------QLGSASPN 178
                       E  G  + +  + + PK+   +A +S+D  V V          ++S  
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 179 FTLEGHEK---------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           F    H            VN +++       +L +   D ++  W+ Q +  ++     
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRH--KFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 27/224 (12%), Positives = 71/224 (31%), Gaps = 13/224 (5%)

Query: 15  SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV---KSFEVCDLPVRAAKFVP-RKN 70
            D +    + P++  +L + ++G + V+  +                P+    F+     
Sbjct: 11  KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70

Query: 71  WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA-VHPTQPFLLTSSDDMLIKLWN-- 127
            I  G+   ++   +      F +   +   +            L+ +S D LI++ +  
Sbjct: 71  QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 128 -WEKAWACQQVFEGHTHYVMQIVINP-KDNNTFASASLDRTVKVWQLGSASPNFTLE--- 182
            +       +    +   V   +     +++       +  V+ ++L     +       
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190

Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRL-VKIWDYQNKTCVQTL 225
           G +  +  V       + Y  S  D R+ V+ +D Q      + 
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 28/193 (14%)

Query: 15  SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV---CDLPVRAAKFVPRK-N 70
            +++   D +     ++  + N  V  +     ++             +R    +P++  
Sbjct: 150 KNKIFTMDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE 207

Query: 71  WIVTGSDDMQVCVFNYNT------LERFHSFEAHSDY---------VRCVAVHPTQPFLL 115
                S D +V V  ++         +  +F  H            V  +   P   FL 
Sbjct: 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267

Query: 116 TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
           T+  D +I  WN +     +   + +   V++I  +    N    A+ D T K     +A
Sbjct: 268 TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD---NILCLATSDDTFK----TNA 320

Query: 176 SPNFTLEGHEKGV 188
           + + T+E +   +
Sbjct: 321 AIDQTIELNASSI 333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 95.9 bits (238), Expect = 3e-23
 Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 15  SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRK 69
              ++   L   E  ++A    +  + V++ +        ++          A       
Sbjct: 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161

Query: 70  NWIVTGSDDMQVCVFNYNTLERFHS----FEAHSDYVRCVAVHPTQP---FLLTSSDDML 122
             ++       V   + N++            H   +  V +        F++TS  D  
Sbjct: 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH 221

Query: 123 IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
           IK+ ++ + +   +   GH H+V  I      +    SA  D  +  W   +     T +
Sbjct: 222 IKISHYPQCFIVDKWLFGHKHFVSSICCGK--DYLLLSAGGDDKIFAWDWKTGKNLSTFD 279

Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLV---KIWDYQNKTCVQTLESGI 229
            +      ++  H     +     D       KI   +N   V       
Sbjct: 280 YNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT 329

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 66.7 bits (162), Expect = 4e-13
 Identities = 19/177 (10%), Positives = 47/177 (26%), Gaps = 25/177 (14%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT----------------LERFHSFEAHSDYV 102
           P++        + +     +  +  F Y +                ++   +  A     
Sbjct: 6   PLQNLLTSRDGSLVFAIIKNC-ILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQG 64

Query: 103 RCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS 162
           +          L ++  D + +     K  +          Y+  + +   ++   A A 
Sbjct: 65  QSSENENENKKLKSNKGDSIKRTAA--KVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD 122

Query: 163 LDRTVKVWQLGSASPNFTL----EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
            D+++ V+ +   S N           K  N +          +I       V   D
Sbjct: 123 SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT--TVIIADKFGDVYSID 177

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 89.5 bits (221), Expect = 8e-21
 Identities = 27/238 (11%), Positives = 71/238 (29%), Gaps = 34/238 (14%)

Query: 15  SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT 74
           S +        T+  +  +   G VH++  +  + V   E     ++  +FV    ++V 
Sbjct: 17  SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVV 74

Query: 75  GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---- 130
            +    V V +  + +   +       +  +    +  ++L    +  + +++ ++    
Sbjct: 75  INAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133

Query: 131 ------AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW-------------- 170
                               ++ I  NP+D  T   +  +     +              
Sbjct: 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYVTLTYSLVENEIKQSFIYE 192

Query: 171 ----QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
                 G      T E     V    Y+      ++I+  +D  +  WD  +   +  
Sbjct: 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL--HIITIHEDNSLVFWDANSGHMIMA 248

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 69.5 bits (169), Expect = 6e-14
 Identities = 19/190 (10%), Positives = 57/190 (30%), Gaps = 30/190 (15%)

Query: 30  MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL 89
           ++       V+V +  + + + +       + +       +W++ G  +  + V++ +  
Sbjct: 72  LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130

Query: 90  ER-----------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ--- 135
           +                 A    +  +  +P     +  S + +   ++  +    Q   
Sbjct: 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFI 190

Query: 136 --------------QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
                         +  E  T  V+Q + +P ++    +   D ++  W   S       
Sbjct: 191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMAR 249

Query: 182 EGHEKGVNCV 191
              E  +N  
Sbjct: 250 TVFETEINVP 259

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 61.4 bits (148), Expect = 3e-11
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 40/232 (17%)

Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
                  AR   +     +P +   +   Y      ++   N+  +SF   +LP  A   
Sbjct: 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIY-ELPPFAPGG 200

Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
              +                        + E  +  V     HP    ++T  +D  +  
Sbjct: 201 DFSE-----------------------KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237

Query: 126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT----- 180
           W+         +    T +  +I +   D    +S +  +  KV+ +   +P +T     
Sbjct: 238 WDANS----GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293

Query: 181 ----LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                 G  + +  +D    G  P     + + +   +    +  +  L + 
Sbjct: 294 HKSISRGDNQSLTMIDL---GYTPRYSITSYEGMKNYYANPKQMKIFPLPTN 342

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 58.3 bits (140), Expect = 4e-10
 Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT 157
            S      A   TQ  L  ++    + ++   +      +       + ++         
Sbjct: 16  MSSKPIAAAFDFTQNLLAIATVTGEVHIYG--QQQVEVVIKLEDRSAIKEMRFVK--GIY 71

Query: 158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
               +   TV V  L S     T+    K +  +D     D  +++ G  +  + ++D  
Sbjct: 72  LVVINAKDTVYVLSLYSQKVLTTVFVPGK-ITSIDTDASLD--WMLIGLQNGSMIVYDID 128

Query: 218 NKTCVQ 223
                 
Sbjct: 129 RDQLSS 134

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 48.3 bits (114), Expect = 9e-07
 Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
            +    G +   +    +    N  A A++   V ++          LE     +  + +
Sbjct: 9   AETNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRF 66

Query: 194 YHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
             G    YL+       V +    ++  + T+
Sbjct: 67  VKGI---YLVVINAKDTVYVLSLYSQKVLTTV 95

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 26/258 (10%), Positives = 70/258 (27%), Gaps = 56/258 (21%)

Query: 12  TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-- 69
             R+ +V     HP    ++    +  +  W+  +   + +  V +  +   +    +  
Sbjct: 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDS 267

Query: 70  ----------NWIVTGSDDMQVCVFNYNTLERFH-------------------------- 93
                      W+   + +    + ++ ++ R                            
Sbjct: 268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327

Query: 94  ----------SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-- 141
                         +   V  + +    P+     +  LI L              G   
Sbjct: 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFT 387

Query: 142 ---THYVMQIVINPKDNNTFASASLDRTVKVWQL-GSASPNFTLEGHEKGVNCVDYYHGG 197
              + +   +        T  +AS+   + +  L  + + ++ L+G  +          G
Sbjct: 388 DKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447

Query: 198 DKPYLISGADDRLVKIWD 215
                I+G  +  V+I+D
Sbjct: 448 T--AFITGHSNGSVRIYD 463

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 83.4 bits (205), Expect = 1e-18
 Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 25/216 (11%)

Query: 24  HPTEPWMLASLY-NGHVHVWNHETN-QNVKSFEVCDLPVRAAKF---------VPRKNWI 72
            P     L+ +   G ++      N  +V  F++C+ P                     +
Sbjct: 221 APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280

Query: 73  VTGSDDMQVCVFNYNTLER-FHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNW 128
           V G  +  V  F+    E      + H  Y+  V+   +      + T + D    ++N 
Sbjct: 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340

Query: 129 EKAWACQQVFEGHTH--YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
            K  A  +          ++ +V  P    ++  +    +++     +A     L   E 
Sbjct: 341 -KDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398

Query: 187 GVNCVDY--YHGGDKPYLISGADDRLVKIWDYQNKT 220
            +  +     H    P +++G+ D  + I +   + 
Sbjct: 399 TITAIGVSRLH----PMVLAGSADGSLIITNAARRL 430

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 74.9 bits (183), Expect = 9e-16
 Identities = 18/211 (8%), Positives = 53/211 (25%), Gaps = 22/211 (10%)

Query: 38  HVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNW------IVTGSDDMQVCVFN---- 85
            +   N  T   VK   +      V   K+    +       +   S +  +        
Sbjct: 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245

Query: 86  -------YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
                      +   +       +           ++    +  +  ++           
Sbjct: 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYD 304

Query: 139 EGHTHYVMQIVI--NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG 196
           + H  Y++ +    +  ++   ++ ++D    ++     +   T     +G N V   + 
Sbjct: 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC 364

Query: 197 GDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
                 I       ++    +    V  L S
Sbjct: 365 PQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 64.5 bits (156), Expect = 3e-12
 Identities = 20/205 (9%), Positives = 58/205 (28%), Gaps = 14/205 (6%)

Query: 20  CCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGS 76
                  E  +++++  +G+ +++N +     K+         +    + P+    +   
Sbjct: 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374

Query: 77  DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---AWA 133
               +           H   +    +  + V    P +L  S D  + + N  +      
Sbjct: 375 GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGI 434

Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
                   +  + +   + KD+     +S +         +      ++ H   + C  +
Sbjct: 435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTV---NDVSKAKIDAHGINITCTKW 491

Query: 194 ---YHGGDKPYLISGADDRLVKIWD 215
                GG            L+ +  
Sbjct: 492 NETSAGG--KCYAFSNSAGLLTLEY 514

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 18/169 (10%), Positives = 40/169 (23%), Gaps = 11/169 (6%)

Query: 12  TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW 71
             R   +      P     + S     +          V      +  + A         
Sbjct: 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411

Query: 72  IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           ++ GS D  + + N       H  +  S   + + +     +  +  DD      ++E  
Sbjct: 412 VLAGSADGSLIITNAAR-RLLHGIKNSSATQKSLRLW---KWDYSIKDDKYRIDSSYEVY 467

Query: 132 WACQQVFEGHTHYVMQIVI-------NPKDNNTFASASLDRTVKVWQLG 173
                           I I              +A ++    + +  L 
Sbjct: 468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 80.6 bits (198), Expect = 4e-18
 Identities = 31/210 (14%), Positives = 69/210 (32%), Gaps = 15/210 (7%)

Query: 30  MLASLYNGHVHVWNHETNQNVKSFEVCDL-PVRAAKFVP--RKNWIVTGSDDMQVCVFNY 86
           +L       + + + +TN+ ++  EV     +            + +   +   +   +Y
Sbjct: 97  LLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156

Query: 87  NTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-GHTHY 144
               ++    A SD       +H     L   S D ++ ++N          F       
Sbjct: 157 EDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216

Query: 145 VMQIVINPKDNNTFASASLDRTVKVWQL-----GSASPNFTLEGHEKGVNCVDYYHGGDK 199
           + ++      N  +     D+TV  + L       A P +T+   + G    D    G  
Sbjct: 217 IKEVKFAD--NGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK- 273

Query: 200 PYLISGA-DDRLVKIWDYQNKTCVQTLESG 228
             +I+ + +   + I+ +  KT   T +  
Sbjct: 274 -NMIAYSNESNSLTIYKFDKKTKNWTKDEE 302

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 76.7 bits (188), Expect = 9e-17
 Identities = 24/227 (10%), Positives = 62/227 (27%), Gaps = 21/227 (9%)

Query: 7   IKRKLTARSDRVKCCDLHPTEP--WMLASLYNGHVHVWNHETNQNVKSFEV-CDLPVRAA 63
           ++      ++ +     H      + + +   G +   ++E +          D+   + 
Sbjct: 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG 176

Query: 64  KFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDM 121
                   +   S D  + V+N ++ ++  S         ++ V       +++   D  
Sbjct: 177 VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQT 236

Query: 122 LIKLWNWEKAWACQQV----FEGHTHYVMQIVINP---------KDNNTFASASLDRTVK 168
            +  ++  K                   +   I+           ++N+      D+  K
Sbjct: 237 -VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295

Query: 169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
            W     S    L+        +D   G      I   +D    I  
Sbjct: 296 NWTKDEESA-LCLQSDTADFTDMDVVCGDGGIAAILKTNDS-FNIVA 340

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 9/144 (6%), Positives = 35/144 (24%), Gaps = 3/144 (2%)

Query: 86  YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE--KAWACQQVFEGHTH 143
                   + +         +++  +   +   +D  +     +  K           T 
Sbjct: 23  LQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTG 82

Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYL 202
                +I+    N          + +    +      +E      +  +  ++  +  Y 
Sbjct: 83  GEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYF 142

Query: 203 ISGADDRLVKIWDYQNKTCVQTLE 226
           I   +   +    Y++ +      
Sbjct: 143 IWADNRGTIGFQSYEDDSQYIVHS 166

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADDRLV 211
           D         D  +   QL  +    T+       G         G    L+       +
Sbjct: 47  DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQI 106

Query: 212 KIWDYQNKTCVQTLESG 228
            I D +    ++ +E  
Sbjct: 107 TILDSKTNKVLREIEVD 123

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 73.3 bits (179), Expect = 2e-15
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 36/215 (16%)

Query: 39  VHVWN-HETNQNVKSF--EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
           + +W   E ++  + +  +  D   R    V      V    D+ V              
Sbjct: 119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-----A 173

Query: 96  EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV-------FEGHTHYVMQI 148
            AH+ ++  ++++      L S+DD+ I LW+ E       +        E  T  +   
Sbjct: 174 NAHTYHINSISINSDYETYL-SADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA 232

Query: 149 VINPKDNNTFASASLDRTVKVWQL----------------GSASPNFTLEGHEKGVNCVD 192
             +P   NTF  +S   T+++  +                   S           ++ V 
Sbjct: 233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292

Query: 193 YYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLE 226
           + H G   Y+++  D   VK+WD       V+T +
Sbjct: 293 FSHSGR--YMMTR-DYLSVKVWDLNMENRPVETYQ 324

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 67.1 bits (163), Expect = 3e-13
 Identities = 26/201 (12%), Positives = 63/201 (31%), Gaps = 41/201 (20%)

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNTLER--------FHSFEAHSDYVRCVAVHPTQPFLL- 115
                   ++ +DD+++ +++    +R          + E  ++ +     HP       
Sbjct: 185 INSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243

Query: 116 TSSDDMLIKLWNWEKAWACQQ---------------VFEGHTHYVMQIVINPKDNNTFAS 160
            SS    I+L +   +  C +                F      +  +  +        +
Sbjct: 244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMT 302

Query: 161 ASLDRTVKVWQLGSAS-PNFTLEGHEKGVNCVDYYHG-------------GDKPYLISGA 206
                +VKVW L   + P  T + HE   + +   +              G    +++G+
Sbjct: 303 RD-YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361

Query: 207 DDRLVKIWDYQNKTCVQTLES 227
            +   +++D   K  +    S
Sbjct: 362 YNNFFRMFDRNTKRDITLEAS 382

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 55.2 bits (132), Expect = 4e-09
 Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 40/195 (20%)

Query: 60  VRAAKFVPRKNWIVTGSDDMQVCVFN--------------YNTLERFHSFEAHSDY---- 101
           +   +F      + TG    +V +F               YN    F S E   DY    
Sbjct: 31  ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90

Query: 102 -----VRCVAVHPTQP--FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP-- 152
                +  +   P +     L S++D  IKLW   K     +  EG+             
Sbjct: 91  EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW---KISERDKRPEGYNLKEEDGRYRDPT 147

Query: 153 --KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
                       +D  V+               H   +N +      D    +S ADD  
Sbjct: 148 TVTTLRVPVFRPMDLMVEASPRRI-----FANAHTYHINSIS--INSDYETYLS-ADDLR 199

Query: 211 VKIWDYQNKTCVQTL 225
           + +W  +       +
Sbjct: 200 INLWHLEITDRSFNI 214

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 54.8 bits (131), Expect = 4e-09
 Identities = 27/258 (10%), Positives = 72/258 (27%), Gaps = 51/258 (19%)

Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP------ 59
             +    A +  +    ++        S  +  +++W+ E     +SF + D+       
Sbjct: 168 PRRIFANAHTYHINSISINSDYET-YLSADDLRINLWHLEITD--RSFNIVDIKPANMEE 224

Query: 60  ----VRAAKFVPR-KNWIVTGSDDMQVCVF----------------NYNTLERFHSFEAH 98
               + AA+F P   N  V  S    + +                           F   
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284

Query: 99  SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK----- 153
              +  V    +  +++ + D + +K+W+        + ++ H +   ++    +     
Sbjct: 285 ISSISDVKFSHSGRYMM-TRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343

Query: 154 ---------DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS 204
                     ++   + S +   +++   +          E             +    S
Sbjct: 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTV---LKPRKVCAS 400

Query: 205 GADDR---LVKIWDYQNK 219
           G   +    V   D+  K
Sbjct: 401 GKRKKDEISVDSLDFNKK 418

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 48.6 bits (115), Expect = 5e-07
 Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 28/144 (19%)

Query: 98  HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-------------KAWACQQVFEGHTHY 144
            +D +  V  + +   L T      + ++  E               ++  Q  E    Y
Sbjct: 27  EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDY 86

Query: 145 VMQIVINPK----------DNNTFASASLDRTVKVWQLGSASPN---FTLEGHEKGVNCV 191
           +  + I  K          +   F  ++ D+T+K+W++         + L+  +      
Sbjct: 87  LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDP 146

Query: 192 DYYHGGDKPYLISGADDRLVKIWD 215
                   P       D +V+   
Sbjct: 147 TTVTTLRVPVFRP--MDLMVEASP 168

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 12/130 (9%), Positives = 32/130 (24%), Gaps = 30/130 (23%)

Query: 127 NWEKAWACQQVFE------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
             +  W   QV             +  +  N       A+      V ++Q    +   +
Sbjct: 7   GNDIQWCFSQVKGAVDDDVAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQS 65

Query: 181 LEGH-----------------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ 217
                                      E+ +N + +    +    +   +D+ +K+W   
Sbjct: 66  HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKIS 125

Query: 218 NKTCVQTLES 227
            +       +
Sbjct: 126 ERDKRPEGYN 135

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 72.0 bits (176), Expect = 6e-15
 Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 19/197 (9%)

Query: 34  LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH 93
                +         N       +  +        ++     + D    V     L +  
Sbjct: 132 RITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQD--QGVQQKAILGKGV 189

Query: 94  SFEAHSDYVRCVAVHPTQPFLLTSSDDM-LIKLWNWEKAWACQQVFEGHTH--YVMQIVI 150
             +AH++ ++ V ++     + T S D  +I+++  E      + F        V+ +  
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKW 248

Query: 151 NPKDNNTFASASLDRTVKVWQLGSASPN--------FTLEGHEKGVNCVDYYHGGDKPY- 201
           +  D +  A  S   T+ V+++ +   N          ++  +   +  ++    DK   
Sbjct: 249 ST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR 307

Query: 202 ---LISGADDRLVKIWD 215
              +   ++  LV +W 
Sbjct: 308 GCKIAWISESSLVVVWP 324

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 66.2 bits (161), Expect = 5e-13
 Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 29/215 (13%)

Query: 23  LHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC 82
           LH T      +     VH+W+    Q+V   +  D PV+       + +IV    D  + 
Sbjct: 67  LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFL--SREFIVVSYGD-VIS 122

Query: 83  VFNYNTLERFHSFE----------------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
           VF +    +  + +                ++   +  + +   Q     ++ D  ++  
Sbjct: 123 VFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK 182

Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT-VKVWQLGSASPNFTLEGHE 185
                     + + HT+ +  + +N   ++  A+ S D T ++V++              
Sbjct: 183 AILG---KGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL 238

Query: 186 K--GVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
               V  + +    D   L   +D   + +++  N
Sbjct: 239 DRADVVDMKWST--DGSKLAVVSDKWTLHVFEIFN 271

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 21/216 (9%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 30  MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT 88
            L         ++N     ++ S E+    +   + + R N++         V +++   
Sbjct: 33  CLILSTLKSFEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90

Query: 89  LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE---------------KAWA 133
            +     +  +  V+ + +       +  S   +I ++ +                  ++
Sbjct: 91  KQDVSRIKVDAP-VKDLFLSREF---IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFS 146

Query: 134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY 193
              +   +   + QI I    ++    ++  +   V Q         ++ H   +  V  
Sbjct: 147 NGLLVYSNEFNLGQIHITKLQSS---GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL 203

Query: 194 YHGGDKPYLISGADD-RLVKIWDYQNKTCVQTLESG 228
               D   + + + D  +++++  ++   V+    G
Sbjct: 204 NRKSDM--VATCSQDGTIIRVFKTEDGVLVREFRRG 237

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 14/138 (10%), Positives = 39/138 (28%), Gaps = 10/138 (7%)

Query: 87  NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
            T          S+ V     +  Q  L+ S+     +++N         +      ++ 
Sbjct: 7   ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP---VAHIMSQEMRHLS 62

Query: 147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA 206
           ++ +  + N       +   V +W          ++     V  +           I  +
Sbjct: 63  KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAP-VKDLFLSREF-----IVVS 116

Query: 207 DDRLVKIWDYQNKTCVQT 224
              ++ ++ + N     T
Sbjct: 117 YGDVISVFKFGNPWKRIT 134

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 20/162 (12%), Positives = 48/162 (29%), Gaps = 17/162 (10%)

Query: 11  LTARSDRVKCCDLHPTEPWM-LASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVP 67
           + A ++ +K   L+     +   S     + V+  E    V+ F   +    V   K+  
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250

Query: 68  RKNWIVTGSDDMQVCVFNYNT--LERFHSFEA------HSDYVRCVAVHPTQPF------ 113
             + +   SD   + VF        + H+ +                   +         
Sbjct: 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310

Query: 114 LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN 155
           +   S+  L+ +W   +     +V          I ++ ++ 
Sbjct: 311 IAWISESSLVVVWPHTRMIETFKVVFDDEMERWLIQMDQREQ 352

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 67.6 bits (164), Expect = 2e-13
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 16/132 (12%)

Query: 98  HSDYVRCVAVHPTQPFL----LTSSDDMLIKLWNWE----------KAWACQQVFEGHTH 143
               +  +A+      L    ++S    +I  ++            + +A  ++ +    
Sbjct: 91  MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG 150

Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
            V+ +  NP   +  A    D ++ V Q+               V  V +   G    L 
Sbjct: 151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK--QLA 208

Query: 204 SGADDRLVKIWD 215
            G  +  V  + 
Sbjct: 209 VGKQNGTVVQYL 220

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 21/181 (11%)

Query: 7   IKRKLTARSDRVKCCDLHPTEPWMLASLYNGH----VHVWNHET-----NQNVKSFEVCD 57
           ++  L      +    L      + A + +      +  ++  T      Q  + F    
Sbjct: 84  VQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK 143

Query: 58  LPVRAAKFVPRKNW-------IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPT 110
           L   A   V    W       +     D  + V       +  +    +  V  V   P 
Sbjct: 144 LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK 203

Query: 111 QPFLLTSSDDMLIKLWNWEKAWACQQ-----VFEGHTHYVMQIVINPKDNNTFASASLDR 165
              L     +  +  +                   H   V+ ++           A+ D 
Sbjct: 204 GKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263

Query: 166 T 166
           T
Sbjct: 264 T 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.58
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.47
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.46
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.41
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.4
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.25
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.25
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.21
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.2
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.16
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.12
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.01
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.96
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.96
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.94
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.92
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.85
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.81
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.68
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.68
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.66
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.62
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.61
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.56
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.45
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.45
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.45
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.43
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.39
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.36
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.36
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.32
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.24
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.24
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.14
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.07
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.99
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.98
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.96
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.96
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.94
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.85
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.83
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.76
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.7
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.67
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.58
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.57
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.3
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.28
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.23
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.15
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.13
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.03
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.99
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.93
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.86
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.83
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.65
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.39
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.36
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.35
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.3
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.15
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.09
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.02
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.92
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.8
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.76
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.63
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.62
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.47
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.85
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.45
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.29
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.74
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.8
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.12
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.27
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.2
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.09
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	86.51
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	85.91
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	83.87
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.47
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.24
3ott_A	758	Two-component system sensor histidine kinase; beta	83.15
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	81.81
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.72

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.1e-46  Score=296.09  Aligned_cols=225  Identities=60%  Similarity=1.115  Sum_probs=209.4

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      ++++.++|.+|+++|.+++|+|++++|++|+.||.|++||+++++.+..+..+..++.++.|+|++++|++|+.|+.|++
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      ||+++++.+..+.+|.+.|.+++|+|+++++++++.|++|++||++........+.+|...|.++.|+|.++.+|++|+.
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999987767778889999999999999977889999999


Q ss_pred             CCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         164 DRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |++|++||++...+...+. +|...+..++|.+.+++.+|++|+.|++|++||+++++++.++++|
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h  227 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH  227 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence            9999999998887777665 4567899999987777789999999999999999999999999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5e-42  Score=282.55  Aligned_cols=219  Identities=25%  Similarity=0.485  Sum_probs=203.0

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ...+.+|..+|.+++|+|+++.+++|+.||.|++||+.+++....+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      +++.+..+.+|...|.+++|+|++.++++++.|++|++||++.+ .+...+.+|...+..+.++| ++.++++|+.|+.|
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTV  258 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeE
Confidence            99999999999999999999999999999999999999999876 45667889999999999998 68999999999999


Q ss_pred             EEEeCCCCCceEEEecCCCceEEEEEEeCC------------------CcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGG------------------DKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~------------------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++||+.+......+.+|...+.+++|.+..                  .+.+|++|+.|+.|++||+++++++.++.+|
T Consensus       259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence            999999999888999999999999996532                  1458999999999999999999999988765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.7e-41  Score=268.81  Aligned_cols=219  Identities=26%  Similarity=0.434  Sum_probs=196.4

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+.+.+|..+|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus        48 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~  127 (304)
T 2ynn_A           48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE  127 (304)
T ss_dssp             EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG
T ss_pred             eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Ccc-eEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-CCCEEEEEECC
Q psy4653          88 TLE-RFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASLD  164 (229)
Q Consensus        88 ~~~-~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d  164 (229)
                      ++. ....+.+|...|.+++|+| ++..+++++.|++|++||+...........+|...+..+.+.|. ++.+|++|+.|
T Consensus       128 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D  207 (304)
T 2ynn_A          128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (304)
T ss_dssp             GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred             CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence            764 4567889999999999999 56899999999999999997765545555566677888888763 56799999999


Q ss_pred             CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++|++||+++++++..+.+|...|.+++|.  +++++|++|+.||+|++||.+++++++++..+
T Consensus       208 ~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             CeEEEEeCCCCccceeeCCCCCCEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            999999999999999999999999999995  45669999999999999999999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-41  Score=268.51  Aligned_cols=218  Identities=23%  Similarity=0.422  Sum_probs=202.2

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ....+.+|...|.+++|+|+++.+++++.|+.|++||+.+++.+..+..+...+.++.|+|++++|++|+.|+.|++||+
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            44568899999999999999999999999999999999999999998888888999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ++++....+..|...|.+++|+|+++++++++.|+.|++||++.+ .....+.+|..+|..+.|+| ++.+|++|+.|+.
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~  229 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGY  229 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECT-TSCEEEEECTTSC
T ss_pred             CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCe
Confidence            999988888899999999999999999999999999999999876 45666788999999999998 6889999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |++||++.......+.+|...|.+++|.  +++.+|++|+.|++|++||+++++++.++..|
T Consensus       230 i~iwd~~~~~~~~~~~~h~~~v~~~~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h  289 (321)
T 3ow8_A          230 IKIYDVQHANLAGTLSGHASWVLNVAFC--PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH  289 (321)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEECCCcceeEEEcCCCCceEEEEEC--CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence            9999999999889999999999999995  45678999999999999999999999998765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-40  Score=265.54  Aligned_cols=222  Identities=21%  Similarity=0.364  Sum_probs=198.2

Q ss_pred             ccchhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCC-----CeEEEEEecCcCeEEEEEcCCCCEEEEEe
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETN-----QNVKSFEVCDLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~   76 (229)
                      +.+.+..++.||+.+|.+++|+|++ .+|++|+.|++|++||+.+.     ..+..+..|...|.++.|+|++++|++|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            3467778899999999999999975 78999999999999998643     34667888999999999999999999999


Q ss_pred             CCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC---
Q psy4653          77 DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK---  153 (229)
Q Consensus        77 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~---  153 (229)
                      .|+.|++||+++++.+..+.+|...|.+++|+|++.++++++.|++|++||++.  .....+.+|...+..+.+.|.   
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC---
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCC
Confidence            999999999999999999999999999999999999999999999999999964  345667789999999999874   


Q ss_pred             --CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         154 --DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       154 --~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                        ++..+++++.|+.|++||+++......+.+|...|.+++|.  +++.+|++|+.||.|++||+++++++.++..+
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  237 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ  237 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence              34589999999999999999888888899999999999995  46679999999999999999999998887643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-41  Score=276.55  Aligned_cols=220  Identities=24%  Similarity=0.468  Sum_probs=203.0

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +..+.+.+|++.|.+++|+|+++.|++|+.|++|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||
T Consensus       141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd  220 (410)
T 1vyh_C          141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE  220 (410)
T ss_dssp             CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC-----------
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD-----------  154 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------  154 (229)
                      ++++..+..+.+|...|.++.++|++.++++++.|++|++||+... .+...+.+|...|.++.|+|..           
T Consensus       221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence            9999999999999999999999999999999999999999999776 4456678899999999999842           


Q ss_pred             --------CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         155 --------NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       155 --------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                              +.+|++|+.|+.|++||++++.++..+.+|...|.+++|.  +++.+|++|+.|+.|++||+++++++.++.
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~--~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence                    5689999999999999999999999999999999999995  456689999999999999999999998887


Q ss_pred             cC
Q psy4653         227 SG  228 (229)
Q Consensus       227 ~~  228 (229)
                      +|
T Consensus       378 ~h  379 (410)
T 1vyh_C          378 AH  379 (410)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.2e-40  Score=259.40  Aligned_cols=222  Identities=20%  Similarity=0.438  Sum_probs=201.0

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      +...+...+.+|+.+|.+++|+|++++|++++.||.|++||..+++....+..|...|.++.|+|++++|++|+.|+.|+
T Consensus        11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            34556677899999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      +||+++++.+..+.+|...|.+++|+|++.++++++.|+.|++||++.. .....+..|..++..+.|+| ++.+|++++
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  168 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSS  168 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcC-CCCEEEEEe
Confidence            9999999999999999999999999999999999999999999999876 44566778999999999998 688999999


Q ss_pred             CCCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         163 LDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .|+.|++||+++++.+..+. .+...+.+++|.  +++.+|++++.|+.|++||+++++++..+..+
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  233 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS--PNGKYILAATLDNTLKLWDYSKGKCLKTYTGH  233 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence            99999999999888777664 455678888884  46679999999999999999999999888754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-39  Score=262.15  Aligned_cols=217  Identities=22%  Similarity=0.445  Sum_probs=196.4

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      +...+.+.+|..+|.+++|+|++++|++|+.||.|++||..+++.+..+..+...+.++.|+|++++|++|+.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567799999999999999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             ECCCcc----eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          85 NYNTLE----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        85 d~~~~~----~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ++.+.+    ....+.+|.+.|.++.|++++. +++++.|++|++||++.. .....+.+|...|..+.|+| ++.++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s  201 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAP-DTRLFVS  201 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-cEEEEEcCCCCceEEEEECC-CCCEEEE
Confidence            997653    4566789999999999998765 889999999999999876 44566789999999999998 6789999


Q ss_pred             EECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |+.|+.|++||++++.+...+.+|...|.+++|.+  ++.+|++|+.|++|++||+++++.+.++.
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            99999999999999999999999999999999954  56799999999999999999998877664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.2e-40  Score=264.79  Aligned_cols=213  Identities=19%  Similarity=0.247  Sum_probs=181.5

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE----EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF----EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      .|...|.+++|+|++ .+++|+.||.|++||+++++.+..+    ..|...|.++.|+|++++|++|+.|+.|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            356789999999986 6889999999999999998765443    35788999999999999999999999999999999


Q ss_pred             cceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeee-eecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQV-FEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ++.+..+.+|.+.|.+++|+|++. ++++++.|++|++||++........ ...+...+..+.|+|.++.+|++|+.|+.
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~  238 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT  238 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence            999999999999999999999885 7889999999999999876443332 23455668899999987889999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |++||+++++++..+.+|...|.+++|.+.+ ..+|++|+.|++|+|||+++++++. +.+|
T Consensus       239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g-~~~lasgs~D~~i~vwd~~~~~~~~-~~~H  298 (344)
T 4gqb_B          239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS-VPFLASLSEDCSLAVLDSSLSELFR-SQAH  298 (344)
T ss_dssp             EEEEESCC--CCEEEECCSSCEEEEEECSSS-SCCEEEEETTSCEEEECTTCCEEEE-ECCC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCcEEE-EcCC
Confidence            9999999999999999999999999996432 3589999999999999999998764 4444

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.9e-39  Score=261.28  Aligned_cols=219  Identities=26%  Similarity=0.407  Sum_probs=196.3

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      +...+.+.+|..+|.+++|+|+++.|++|+.||.|++||..+++....+..+...+.++.|+|+++.|++|+.|+.+++|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            34566789999999999999999999999999999999999999888888888899999999999999999999999999


Q ss_pred             ECCCc------ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-CCCE
Q psy4653          85 NYNTL------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-DNNT  157 (229)
Q Consensus        85 d~~~~------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~  157 (229)
                      ++...      .....+..|...|.++.|+|++..+++++.|++|++||++.+ .+...+.+|...|..+.++|. ++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            98543      234567789999999999999999999999999999999876 456678899999999999874 4579


Q ss_pred             EEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |++|+.|++|++||+++++++..+.+|...|.+++|.+  ++.+|++|+.|++|++||+++++.+..+.
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~~~~~~~~~  279 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP--SGDAFASGSDDATCRLYDLRADREVAIYS  279 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            99999999999999999999999999999999999954  55689999999999999999988776654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=258.87  Aligned_cols=205  Identities=24%  Similarity=0.446  Sum_probs=190.5

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+.+.+|...+.+++|+|+++.|++|+.||.|++||+++++....+..+...+.++.|+|++++|++|+.|+.|++||++
T Consensus       115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~  194 (321)
T 3ow8_A          115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA  194 (321)
T ss_dssp             EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            34567788899999999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      +++.+..+++|...|.+++|+|++++|++++.|+.|++||++.. .....+.+|...|..++|+| ++.+|++|+.|++|
T Consensus       195 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v  272 (321)
T 3ow8_A          195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSV  272 (321)
T ss_dssp             TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence            99999999999999999999999999999999999999999866 44567789999999999998 68899999999999


Q ss_pred             EEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      ++||+++++++.++.+|...|.+++|.  +++.+|++++.|+.|++||.
T Consensus       273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s--~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          273 KVWDVGTRTCVHTFFDHQDQVWGVKYN--GNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTCCEEEEEC
T ss_pred             EEEeCCCCEEEEEEcCCCCcEEEEEEC--CCCCEEEEEeCCCeEEEEeC
Confidence            999999999999999999999999994  46678999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.4e-40  Score=269.05  Aligned_cols=221  Identities=27%  Similarity=0.448  Sum_probs=194.7

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      .+...+.+.||+.+|.+++|+|++++|++|+.||+|++||+.+++....+..|...|.++.|+|++++|++|+.|+.+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            34556779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcc-------eEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeee-----ecceeeEEEEEE
Q psy4653          84 FNYNTLE-------RFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVF-----EGHTHYVMQIVI  150 (229)
Q Consensus        84 wd~~~~~-------~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~-----~~~~~~v~~~~~  150 (229)
                      ||+.+..       ....+.+|.+.|.++.|+|++ ..+++++.|++|++||+..+... ..+     .+|...|..+.+
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~-~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE-EEECCCSSSSCCSCEEEEEE
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE-EEeecccCCCCccCeEEEEe
Confidence            9986432       345678899999999999975 47999999999999999876443 333     578889999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCC-CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLG-SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++.++.+|++|+.|++|++||++ ...++..+.+|...|.+++|.  +++.+|+||+.|++|++||+++++++.++..
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~--p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF--PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC--TTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe--cCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence            88788999999999999999997 456788899999999999995  4667899999999999999999999887754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=261.46  Aligned_cols=208  Identities=15%  Similarity=0.162  Sum_probs=179.9

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~   88 (229)
                      .+.+|++.|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.++.|+|++. +|++|+.|+.|++||+++
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence            4568999999999999999999999999999999999999999999999999999999874 789999999999999999


Q ss_pred             cceEEEec--cCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          89 LERFHSFE--AHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        89 ~~~~~~~~--~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      ++....+.  .|...+.+++|+|+ +.++++|+.|++|++||++.. .+...+.+|...|.+++|+|....+|+||+.|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          202 PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            88877764  34567899999985 457889999999999999876 456678899999999999995557899999999


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +|++||+.+++ +..+.+|...|.+++|++.+ ..+|+||+.|++|++|++.++.
T Consensus       281 ~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~-~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          281 SLAVLDSSLSE-LFRSQAHRDFVRDATWSPLN-HSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEECTTCCE-EEEECCCSSCEEEEEECSSS-TTEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEECCCCc-EEEEcCCCCCEEEEEEeCCC-CeEEEEEcCCCeEEEEECCCCC
Confidence            99999998775 45678999999999996533 3478899999999999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-39  Score=258.93  Aligned_cols=212  Identities=21%  Similarity=0.392  Sum_probs=178.4

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEE-Ee-cCcCeEEEEEcCCCCEEEEEeCCCe
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSF-EV-CDLPVRAAKFVPRKNWIVTGSDDMQ   80 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~l~sg~~d~~   80 (229)
                      ++..+.+.+|+.+|.+++|+|+  .|++|+.|+.|++||+.++.  .+..+ .. |..+|.++.|+|++++|++|+.|+.
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            4566779999999999999998  89999999999999998753  34444 23 7778999999999999999999999


Q ss_pred             EEEEECCC-------cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc---eeeeeeeecceeeEEEEEE
Q psy4653          81 VCVFNYNT-------LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA---WACQQVFEGHTHYVMQIVI  150 (229)
Q Consensus        81 i~iwd~~~-------~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~---~~~~~~~~~~~~~v~~~~~  150 (229)
                      |++||++.       .+.+..+.+|.+.|.+++|+|++++|++++.|++|++||+...   ..+...+.+|...|..+.|
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            99999843       3456778899999999999999999999999999999999532   2345667889999999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCCC--CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGSA--SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +| ++.+|++|+.|++|++||...+  +++..+.+|...|.+++|.+...+.+|++|+.|++|++||++++
T Consensus       162 ~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          162 HP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             CS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            99 6889999999999999998765  56778899999999999976544568999999999999998754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=261.06  Aligned_cols=214  Identities=28%  Similarity=0.402  Sum_probs=185.6

Q ss_pred             CCccchhhhhcccCCC-ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE---EecCcCeEEEEEcCCCCEEEEEe
Q psy4653           1 MPLRLDIKRKLTARSD-RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF---EVCDLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~   76 (229)
                      |-..++..+.+.+|.. +|.+++|+|++++|++|+.|+.|++||+.++......   ..|...|.++.|+|++++|++|+
T Consensus         1 ~~~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s   80 (345)
T 3fm0_A            1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS   80 (345)
T ss_dssp             ---CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence            4455677888999998 9999999999999999999999999999987643322   45778899999999999999999


Q ss_pred             CCCeEEEEECCCc--ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEEEEcC
Q psy4653          77 DDMQVCVFNYNTL--ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQIVINP  152 (229)
Q Consensus        77 ~d~~i~iwd~~~~--~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~  152 (229)
                      .|+.+++||.+..  +.+..+.+|...|.+++|+|++++|++++.|++|++||++...  .+...+.+|...|..+.|+|
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            9999999998765  4567889999999999999999999999999999999997643  34566788999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         153 KDNNTFASASLDRTVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       153 ~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                       ++.+|++|+.|+.|++||.+...  +...+.+|...|.+++|.  +++.+|++|+.|++|+|||..
T Consensus       161 -~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s--p~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          161 -SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD--PSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             -SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEEE
T ss_pred             -CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC--CCCCEEEEEeCCCeEEEeccc
Confidence             67899999999999999997764  456788999999999995  466799999999999999963

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.8e-39  Score=253.06  Aligned_cols=210  Identities=20%  Similarity=0.279  Sum_probs=182.0

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC--CCeEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEEEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET--NQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~iwd   85 (229)
                      .+.+|.+.|.+++|+|+++.|++|+.|+.|++||+.+  .+.+..+..|..+|.++.|+|+  +++|++|+.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            3678999999999999999999999999999999975  3667888899999999999874  88999999999999999


Q ss_pred             CCCcc--eEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCCC------
Q psy4653          86 YNTLE--RFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPKD------  154 (229)
Q Consensus        86 ~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~------  154 (229)
                      +++++  .+..+..|...|.+++|+|+  +.++++++.|++|++||++.... ....+.+|...|..+.|+|..      
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence            98764  55667889999999999997  78999999999999999976532 245677899999999999842      


Q ss_pred             ------CCEEEEEECCCcEEEEeCCCCC----ceEEEecCCCceEEEEEEeCC-CcCEEEEeeCCCeEEEEECCCC
Q psy4653         155 ------NNTFASASLDRTVKVWQLGSAS----PNFTLEGHEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       155 ------~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                            +.+|++|+.|++|++||+++..    ....+.+|...|.+++|.+.+ .+.+|++|+.|++|+|||++++
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                  4699999999999999998765    456788999999999996543 1368999999999999999764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-38  Score=250.62  Aligned_cols=220  Identities=22%  Similarity=0.402  Sum_probs=196.7

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+.+.+|..+|.+++|+|+++.|++++.|+.|++||+++++.+..+..+...+.++.|+|++++|++|+.|+.|++||+
T Consensus        57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~  136 (312)
T 4ery_A           57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  136 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ++++.+..+..|...|.+++|+|++.++++++.|+.|++||++...........+..++..+.|+| ++.++++++.|+.
T Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~  215 (312)
T 4ery_A          137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNT  215 (312)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTE
T ss_pred             CCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence            999999999999999999999999999999999999999999877555555556677899999998 6889999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEE--EEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCV--DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |++||+++++.+..+.+|.....++  .+. ..++.+|++|+.||.|++||+++++++.+++.|
T Consensus       216 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  278 (312)
T 4ery_A          216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFS-VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH  278 (312)
T ss_dssp             EEEEETTTTEEEEEECSSCCSSSCCCEEEE-CSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEECCCCcEEEEEEecCCceEEEEEEEE-eCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence            9999999998888888887654332  333 335668999999999999999999999998866

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-38  Score=254.69  Aligned_cols=214  Identities=22%  Similarity=0.339  Sum_probs=184.2

Q ss_pred             CccchhhhhcccCCCceEEEEE-----cc-CCCeEEEEEecCeEEEEEcCCC-------CeEEEEEecCcCeEEEEEcCC
Q psy4653           2 PLRLDIKRKLTARSDRVKCCDL-----HP-TEPWMLASLYNGHVHVWNHETN-------QNVKSFEVCDLPVRAAKFVPR   68 (229)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~-----~p-~~~~l~~~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~   68 (229)
                      +++++....+.||++.|.+++|     +| ++++|++|+.|++|++||+.+.       .....+..|...|.++.|+|+
T Consensus         8 ~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R            8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             ceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            3456677789999999999999     77 8999999999999999999754       345567788889999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee-eeeecceeeEEE
Q psy4653          69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ-QVFEGHTHYVMQ  147 (229)
Q Consensus        69 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~-~~~~~~~~~v~~  147 (229)
                      +++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++.++++++.|++|++||+....... ....+|...+.+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            9999999999999999999999999999999999999999999999999999999999997432111 112368888999


Q ss_pred             EEEcCCC---------CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         148 IVINPKD---------NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       148 ~~~~~~~---------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +.|+|..         +.+|++++.|+.|++||. .......+.+|...|.+++|.  +++.+|++|+.|+.|++||+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s--~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS--PNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTCEEEEEESSC
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC--CCCCEEEEEcCCCeEEEEECCC
Confidence            9999843         268999999999999994 455667788999999999994  4667999999999999999943

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-37  Score=248.95  Aligned_cols=226  Identities=21%  Similarity=0.318  Sum_probs=199.8

Q ss_pred             CCccchhhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCC-----eEEEEEecCcCeEEEEEcCCCCEEEE
Q psy4653           1 MPLRLDIKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQ-----NVKSFEVCDLPVRAAKFVPRKNWIVT   74 (229)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s   74 (229)
                      |+++++++.+|.||++.|++++|+|+ +++|++|+.|++|++||+.+.+     +...+..|...|.++.|+|++++|++
T Consensus        24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            46778889999999999999999998 5789999999999999998754     34566778889999999999999999


Q ss_pred             EeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653          75 GSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        75 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      |+.|+.|++|+............+...+..+.+++++.++++++.|+.+++||+...........+|...+..+.+++..
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            99999999999998888888888888999999999999999999999999999987766666677888999999998643


Q ss_pred             -CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         155 -NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       155 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                       ..++++++.|+.|++||+++.+....+.+|...|.+++|.  +++.+|++|+.|+.|++||+++++++..+..+
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  256 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG  256 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC--CCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence             4578899999999999999999999999999999999994  46679999999999999999999998887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-38  Score=253.00  Aligned_cols=205  Identities=19%  Similarity=0.335  Sum_probs=184.7

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+.+.+|...|.++.|+|++. +++++.|+.|++||+++++.+..+..|...|.++.|+|++++|++|+.|+.|++||+
T Consensus       135 ~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~  213 (340)
T 1got_B          135 VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            4456789999999999999876 889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee-eecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV-FEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      ++++....+.+|...|.+++|+|++.++++++.|++|++||++........ ...+...|..+.|+| ++.+|++|+.|+
T Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~  292 (340)
T 1got_B          214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF  292 (340)
T ss_dssp             TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred             CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCC
Confidence            999999999999999999999999999999999999999999876433222 122345789999998 689999999999


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      .|++||+.+...+..+.+|...|.+++|.  +++.+|+||+.|+.|+|||
T Consensus       293 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~s--~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          293 NCNVWDALKADRAGVLAGHDNRVSCLGVT--DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred             eEEEEEcccCcEeeEeecCCCcEEEEEEc--CCCCEEEEEcCCccEEecC
Confidence            99999999999999999999999999995  4667899999999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.7e-38  Score=249.22  Aligned_cols=219  Identities=15%  Similarity=0.216  Sum_probs=185.1

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC----eEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ----NVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQV   81 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i   81 (229)
                      ++.+.+|+++|.+++|+|++++|++|+.||.|++||+.++.    ....+..|..+|.++.|+|  ++++|++|+.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            44578999999999999999999999999999999999763    5566677888999999999  58999999999999


Q ss_pred             EEEECCCc---------ceEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-----------------
Q psy4653          82 CVFNYNTL---------ERFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA-----------------  133 (229)
Q Consensus        82 ~iwd~~~~---------~~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~-----------------  133 (229)
                      ++||++++         +.+..+..|...|.+++|+|+  +.++++++.|+.|++||++....                 
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999876         457778899999999999999  99999999999999999864321                 


Q ss_pred             ------------------------------------------eeeeeecceeeEEEEEEcCCCC---CEEEEEECCCcEE
Q psy4653         134 ------------------------------------------CQQVFEGHTHYVMQIVINPKDN---NTFASASLDRTVK  168 (229)
Q Consensus       134 ------------------------------------------~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~  168 (229)
                                                                ....+.+|...|.++.|+|..+   .+|++|+.|+.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence                                                      1233456888999999998432   7999999999999


Q ss_pred             EEeCCCC----------------------------------------------CceEEEecCCCceEEEEEEeCCCcCEE
Q psy4653         169 VWQLGSA----------------------------------------------SPNFTLEGHEKGVNCVDYYHGGDKPYL  202 (229)
Q Consensus       169 ~wd~~~~----------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l  202 (229)
                      +||++..                                              .++..+.+|...|.+++|.+  ++.+|
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l  321 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL--TGTIL  321 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS--SSCCE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC--CCCEE
Confidence            9998764                                              45566788999999999954  55689


Q ss_pred             EEeeCCCeEEEEECCCC---eEEEeeccC
Q psy4653         203 ISGADDRLVKIWDYQNK---TCVQTLESG  228 (229)
Q Consensus       203 ~s~s~d~~i~iwd~~~~---~~~~~~~~~  228 (229)
                      ++|+.||.|++||++++   ++++.+..+
T Consensus       322 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~  350 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATYSNEFKCMSVITAQ  350 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred             EEecCCCcEEEEecCcCcchhheeehccc
Confidence            99999999999999876   566666654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-37  Score=250.34  Aligned_cols=205  Identities=20%  Similarity=0.329  Sum_probs=184.6

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iw   84 (229)
                      ..+.+.+|+..|.+++|+|++..+++++.|++|++||+++++.+..+..|...+.++.|+|  ++++|++|+.||.|++|
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence            4455778999999999999999999999999999999999999999999999999999988  46899999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec--ceeeEEEEEEcCCCCCEEEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG--HTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      |+++++.+..+.+|...|++++|+|++.++++++.|++|++||++.... ...+..  +...+..+.|+| ++.++++|+
T Consensus       226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~  303 (354)
T 2pbi_B          226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVDFSL-SGRLLFAGY  303 (354)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred             ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccceeEEEEeC-CCCEEEEEE
Confidence            9999999999999999999999999999999999999999999987633 233322  334688999998 689999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      .|+.|++||+.++.++..+.+|...|.+++|.  +++.+|++|+.|++|++|+
T Consensus       304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s--pdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVS--PDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEEC--TTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEECCCCceEEEEECCCCcEEEEEEC--CCCCEEEEEcCCCCEEecC
Confidence            99999999999999899999999999999995  4667899999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.4e-38  Score=254.70  Aligned_cols=216  Identities=20%  Similarity=0.283  Sum_probs=180.8

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE----EEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS----FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ....+|...|.+++|+|++. +++++.||+|++||+.+++....    ...|...|.++.|+|++++|++|+.|+.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            33557999999999999986 56778899999999998765432    23567889999999999999999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeee-eeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQ-VFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      |+++++.+..+++|...|++++|+|++. ++++++.|++|++||++....... .+..|...+.++.|+|..+.+|++|+
T Consensus       167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence            9999999999999999999999999875 789999999999999987644332 23456777999999997778999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .|+.|++||+++++++..+.+|...|.+++|.+. ...+|++|+.|++|+|||+++++++..+.
T Consensus       247 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~lasgs~D~~i~iwd~~~~~~~~~~~  309 (357)
T 4g56_B          247 ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH-SSPFLASISEDCTVAVLDADFSEVFRDLS  309 (357)
T ss_dssp             SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS-SSCCEEEEETTSCEEEECTTSCEEEEECC
T ss_pred             cccceeEEECCCCcEeEEEeccceeEEEEEEcCC-CCCEEEEEeCCCEEEEEECCCCcEeEECC
Confidence            9999999999999999999999999999999643 23589999999999999999999887763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.6e-37  Score=266.30  Aligned_cols=216  Identities=19%  Similarity=0.313  Sum_probs=188.8

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCC----C
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDD----M   79 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~   79 (229)
                      +..+.|.+|++.|.+++|+|++++|++|+.||.|+|||+.+++  ....+..|..+|.++.|+|+++.|++++.+    +
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            3455688999999999999999999999999999999997654  345677788899999999999999998875    3


Q ss_pred             eEEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      .|++||  +++....+.+|.+.|++++|+|+++ .+++++.|++|++||.... .+...+.+|...|.++.|+| ++.+|
T Consensus       130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fsp-dg~~l  205 (611)
T 1nr0_A          130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-DGSLF  205 (611)
T ss_dssp             EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECC-CCCEE
Confidence            677777  4556677889999999999999987 5999999999999998765 45667889999999999999 68999


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEe-------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++|+.|++|++||+.+++++..+.       +|...|.+++|.  +++.+|+||+.|++|++||+++++++.++..
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence            999999999999999888877774       799999999995  4667999999999999999999999887753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-38  Score=253.40  Aligned_cols=212  Identities=19%  Similarity=0.228  Sum_probs=175.0

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVC   82 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~   82 (229)
                      ++..+.+|+++|.+++|+|++++|++|+.|++|++||+++++  .+..+..|..+|.++.|+|+  +++|++|+.|+.|+
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ---------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             eeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            345577999999999999999999999999999999998875  45678889999999999864  88999999999999


Q ss_pred             EEECCCc--ceEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEEEEcCCC--
Q psy4653          83 VFNYNTL--ERFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQIVINPKD--  154 (229)
Q Consensus        83 iwd~~~~--~~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~--  154 (229)
                      +||++++  +.+..+.+|...|.+++|+|+  +.++++++.|++|++||++...  .....+.+|...+..+.|+|..  
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9999876  356778899999999999998  7799999999999999997642  2345567888889999998842  


Q ss_pred             --------------CCEEEEEECCCcEEEEeCCCC---CceEEEecCCCceEEEEEEeCC--CcCEEEEeeCCCeEEEEE
Q psy4653         155 --------------NNTFASASLDRTVKVWQLGSA---SPNFTLEGHEKGVNCVDYYHGG--DKPYLISGADDRLVKIWD  215 (229)
Q Consensus       155 --------------~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~d~~i~iwd  215 (229)
                                    +.+|++|+.|++|++||++..   .++..+.+|...|.+++|.+.+  +..+|++|+.|++|+|||
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          368999999999999999754   3556778999999999997643  236899999999999999


Q ss_pred             CCC
Q psy4653         216 YQN  218 (229)
Q Consensus       216 ~~~  218 (229)
                      +++
T Consensus       245 ~~~  247 (316)
T 3bg1_A          245 CDD  247 (316)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-37  Score=251.38  Aligned_cols=206  Identities=16%  Similarity=0.126  Sum_probs=179.9

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~   89 (229)
                      ..+|+..|.+++|+|+++.|++|+.|+.|++||+++++.+..+..|...|.++.|+|+++ ++++++.|+.|++||++++
T Consensus       135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~  214 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP  214 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC
Confidence            458999999999999999999999999999999999999999999999999999999875 7899999999999999988


Q ss_pred             ceEEEe--ccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          90 ERFHSF--EAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        90 ~~~~~~--~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      +.+..+  ..|...+.+++|+|++ .++++|+.|+.|++||++.. .....+.+|...|..++|+|..+.+|++|+.|++
T Consensus       215 ~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~  293 (357)
T 4g56_B          215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT  293 (357)
T ss_dssp             SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence            766544  3466789999999975 57889999999999999876 4456678899999999999966678999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      |++||+++++.+. ..+|...|.+++|+|. ++.+|+||+.||+|++||+.+.
T Consensus       294 i~iwd~~~~~~~~-~~~H~~~V~~vafsP~-d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          294 VAVLDADFSEVFR-DLSHRDFVTGVAWSPL-DHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEECTTSCEEEE-ECCCSSCEEEEEECSS-STTEEEEEETTSCEEEEECC--
T ss_pred             EEEEECCCCcEeE-ECCCCCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCC
Confidence            9999998876554 4589999999999642 4568999999999999999654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-37  Score=251.49  Aligned_cols=211  Identities=24%  Similarity=0.402  Sum_probs=184.8

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd   85 (229)
                      ....+.+|...|.+++|+|+++.|++++.|+.|++||+++++....+. +...+.++.|+| ++++|++|+.|+.|++||
T Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd  235 (393)
T 1erj_A          157 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD  235 (393)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            345678999999999999999999999999999999999998877765 456799999999 899999999999999999


Q ss_pred             CCCcceEEEe-------ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-----------eeeeeeecceeeEEE
Q psy4653          86 YNTLERFHSF-------EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-----------ACQQVFEGHTHYVMQ  147 (229)
Q Consensus        86 ~~~~~~~~~~-------~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-----------~~~~~~~~~~~~v~~  147 (229)
                      +++++.+..+       .+|...|.+++|+|++.++++++.|+.|++||++...           .+...+.+|...|..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  315 (393)
T 1erj_A          236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS  315 (393)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred             CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence            9988776665       5788999999999999999999999999999986532           234566789999999


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeC----CCcCEEEEeeCCCeEEEEECCCC
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG----GDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +.++| ++.+|++|+.|+.|++||..+++++..+.+|...|.+++|.+.    +++++|+||+.||+|+||++++.
T Consensus       316 ~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          316 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99998 6789999999999999999999999999999999999998642    24678999999999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.3e-37  Score=266.88  Aligned_cols=221  Identities=24%  Similarity=0.322  Sum_probs=193.0

Q ss_pred             hhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCC-----CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETN-----QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM   79 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~   79 (229)
                      .....+.+|++.|.+++|+|++ .+|++|+.|++|++||+.+.     .....+..|...|.++.|+|++++|++|+.|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4445688999999999999975 68889999999999999764     33566788999999999999999999999999


Q ss_pred             eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee--eeeecceeeEEEEEEcCCC-CC
Q psy4653          80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ--QVFEGHTHYVMQIVINPKD-NN  156 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~  156 (229)
                      .|++||+.+++.+..+.+|...|.+++|+|++.++++++.|++|++||+.......  ....+|...|.++.|+|.. ..
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            99999999999999999999999999999999999999999999999986542211  1224688889999999843 25


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .+++|+.|++|++||+++.+....+.+|...|.+++|+  +++.+|++|+.||.|++||+++++++..+..+
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s--pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~  602 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS--PDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN  602 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSBCEEEETTTTEEEECCBCS
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCceEEEecCC
Confidence            89999999999999999998888999999999999995  46679999999999999999999988877543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2e-36  Score=247.80  Aligned_cols=209  Identities=24%  Similarity=0.417  Sum_probs=182.7

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ..|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||+++++....+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999998877666


Q ss_pred             ccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeee------eecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          96 EAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQV------FEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        96 ~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      . +...+.+++|+| ++.++++++.|+.|++||++........      ..+|...|.++.|+| ++.+|++|+.|+.|+
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVK  281 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEE
Confidence            5 567899999999 8899999999999999999876433222      257888999999998 688999999999999


Q ss_pred             EEeCCCC------------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         169 VWQLGSA------------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       169 ~wd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +||++..            .....+.+|...|.+++|.+  ++.+|++|+.|+.|++||.++++++.++++|
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECG--GGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            9998753            23456788999999999854  5568999999999999999999999988876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.1e-37  Score=272.49  Aligned_cols=225  Identities=59%  Similarity=1.099  Sum_probs=208.4

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      ++++.+++.+|+.+|.+++|||++++|++++.||.|++||+.+++.+..+..+..+|.++.|+|++++|++|+.||.|++
T Consensus         2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v   81 (814)
T 3mkq_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (814)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      ||+++++.+..+.+|.+.|.+++|+|+++++++++.|+.|++||++........+.+|..++.++.|+|.++..+++++.
T Consensus        82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999988767777888999999999999866789999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |+.|++||+..+.+...+..+. ..+.+++|.+.+++.+|++|+.||.|++||+++++++.++..|
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  227 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH  227 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            9999999999888888877655 7899999977557779999999999999999999999888754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-37  Score=247.11  Aligned_cols=213  Identities=25%  Similarity=0.450  Sum_probs=175.2

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      ..+|...|.+++|+|++++|++|+.|+.|++||..++.  .+..+..|..+|.++.|+|++++|++|+.|+.|++||++.
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            36899999999999999999999999999999998874  4667778889999999999999999999999999999976


Q ss_pred             cc---eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          89 LE---RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        89 ~~---~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      ..   .+..+.+|...|.+++|+|++.++++++.|+.|++||++... .+...+.+|...|..+.|+| ++.+|++|+.|
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D  215 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDD  215 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCC
Confidence            53   456778899999999999999999999999999999987653 34567789999999999998 68899999999


Q ss_pred             CcEEEEeCCCC--------------------------------------------------------------CceE---
Q psy4653         165 RTVKVWQLGSA--------------------------------------------------------------SPNF---  179 (229)
Q Consensus       165 ~~i~~wd~~~~--------------------------------------------------------------~~~~---  179 (229)
                      ++|++||....                                                              .+.+   
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~  295 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT  295 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence            99999985210                                                              0000   


Q ss_pred             --EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         180 --TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       180 --~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                        ...+|...|.+++|.+.+ ..+|+||+.||+|++|++++++.....
T Consensus       296 ~~~~~~h~~~V~~v~~~p~~-~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNPKE-PGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEETTSSSSCEEEEEECSSS-TTEEEEEETTSCEEEEEECC-------
T ss_pred             eeecccccCcEeEeEEeCCC-ceEEEEcCCCCcEEEEEecCCCCcccc
Confidence              113678889999996432 248999999999999999988765544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-37  Score=244.34  Aligned_cols=205  Identities=21%  Similarity=0.357  Sum_probs=170.7

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-------CCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-------NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +|..+|.+++|+|++++|++|+.|+.|++||.+.       .+.+..+..|..+|.++.|+|++++|++|+.|+.|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999853       345667778888999999999999999999999999999


Q ss_pred             CCC----cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCC-CCEEE
Q psy4653          86 YNT----LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKD-NNTFA  159 (229)
Q Consensus        86 ~~~----~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~  159 (229)
                      ++.    .+.+..+.+|...|.+++|+|++.+|++++.|++|++||+... ..+...+.+|...|..+.|+|.. +.+|+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            943    2456778899999999999999999999999999999998654 24567788999999999999842 56899


Q ss_pred             EEECCCcEEEEeCCCC--------CceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         160 SASLDRTVKVWQLGSA--------SPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~--------~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +|+.|++|++||+...        .....+.+ |...|.+++|.  ++ .+|++++.||.|++||..+++
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~-~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG--FN-GLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC--TT-SCEEEEETTSCEEEEEEETTE
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc--CC-CEEEEEeCCCEEEEEEcCCCc
Confidence            9999999999998654        22333444 88899999995  23 379999999999999998773

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.4e-36  Score=239.91  Aligned_cols=212  Identities=20%  Similarity=0.405  Sum_probs=187.4

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+.+.+|+..|.+++|+|++++|++|+.|++|++||+++++.+..+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CcceEEEeccCCCceeEEEEcCCC------CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQ------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~------~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                       ++.+..+.+|...|.++.|+|..      ..+++++.|+.|++||++.. .....+.+|...|..+.|+| ++.+|++|
T Consensus       138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp-~g~~l~s~  214 (319)
T 3frx_A          138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASP-DGTLIASA  214 (319)
T ss_dssp             -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECT-TSSEEEEE
T ss_pred             -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcC-CCCEEEEE
Confidence             45677888999999999999954      48999999999999999875 45666789999999999998 68999999


Q ss_pred             ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         162 SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +.|++|++||+.+.+++..+..+ ..+.+++|.+  ++.+|++++. +.+++|+++.+..+..+.
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp--~~~~la~~~~-~~i~v~~~~~~~~~~~~~  275 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATA-TGIKVFSLDPQYLVDDLR  275 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEECC-SCEEEEEECS--SSSEEEEEET-TEEEEEEETTEEEEEEEC
T ss_pred             eCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcC--CCCEEEEEcC-CCcEEEEeCcCeeeeccC
Confidence            99999999999999888888765 5799999954  5567777765 469999999887776654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-36  Score=238.62  Aligned_cols=210  Identities=20%  Similarity=0.344  Sum_probs=175.6

Q ss_pred             hhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCC
Q psy4653           6 DIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDM   79 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~   79 (229)
                      +....+.+|+.+|.+++|+|+  ++.|++|+.|++|++||+++++  .+..+..|...|.++.|+|+  +++|++|+.|+
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            345678899999999999864  8899999999999999999874  45566678889999999997  88999999999


Q ss_pred             eEEEEECCCcc--eEEEeccCCCceeEEEEcCC-------------CCEEEEEeCCCcEEEEecCCce---eeeeeeecc
Q psy4653          80 QVCVFNYNTLE--RFHSFEAHSDYVRCVAVHPT-------------QPFLLTSSDDMLIKLWNWEKAW---ACQQVFEGH  141 (229)
Q Consensus        80 ~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~~-------------~~~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~  141 (229)
                      .|++||++...  ....+.+|...|.+++|+|+             +++|++|+.|++|++||++...   .....+.+|
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            99999997653  23567789999999999997             4689999999999999986543   245567899


Q ss_pred             eeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCCCc--e-EEE--ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653         142 THYVMQIVINPKD--NNTFASASLDRTVKVWQLGSASP--N-FTL--EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  214 (229)
Q Consensus       142 ~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~--~-~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iw  214 (229)
                      ...|..+.|+|..  +.+|+|++.|++|++||++....  . ..+  ..|...+.+++|.+  ++++|++++.|+.|+||
T Consensus       204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~las~~~D~~v~lw  281 (297)
T 2pm7_B          204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLW  281 (297)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS--SSCCEEEEETTSCEEEE
T ss_pred             CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC--CCCEEEEEcCCCcEEEE
Confidence            9999999999943  47999999999999999976431  1 223  45777899999954  56689999999999999


Q ss_pred             ECC
Q psy4653         215 DYQ  217 (229)
Q Consensus       215 d~~  217 (229)
                      +..
T Consensus       282 ~~~  284 (297)
T 2pm7_B          282 KEN  284 (297)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.3e-37  Score=253.38  Aligned_cols=218  Identities=17%  Similarity=0.194  Sum_probs=179.2

Q ss_pred             hhhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEE--EEEecCcCeEEEEEcC-CCCEEEEEeCCCeE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVK--SFEVCDLPVRAAKFVP-RKNWIVTGSDDMQV   81 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i   81 (229)
                      .+.+...+|..+|+|++|||. +..|++|+.||.|+|||+.+++...  .+..|..+|.++.|+| ++++|++|+.||.|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            344556789999999999995 5678889999999999998876544  3456788999999998 68899999999999


Q ss_pred             EEEECCCcceEEEec--cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          82 CVFNYNTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      ++||+++........  .+...+.+++|+|++.++++|+.|+.|++||++..  ....+.+|...|.++.|+|....+++
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEE
Confidence            999998654322222  23446789999999999999999999999998643  34567789999999999997667899


Q ss_pred             EEECCCcEEEEeCCCCCceE---EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         160 SASLDRTVKVWQLGSASPNF---TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +|+.|+.|++||+++.....   ...+|...|.+++|.  +++.+|++|+.||.|+|||++++++...+..
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS--PDGARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC--TTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeEC--CCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence            99999999999998765432   346788999999994  4667999999999999999999887766643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-36  Score=247.45  Aligned_cols=211  Identities=19%  Similarity=0.335  Sum_probs=181.6

Q ss_pred             hhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCeEEEE-----EecCcCeEEEEEcC-CCCEEEEEeCC
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSF-----EVCDLPVRAAKFVP-RKNWIVTGSDD   78 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~sg~~d   78 (229)
                      ...+.+.+|+..|.++.|+|++ ..|++|+.|++|++||+++++.+..+     ..|...+.++.|++ ++++|++|+.|
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D  227 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD  227 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence            3456688999999999999975 56899999999999999999988877     45667899999987 78999999999


Q ss_pred             CeEEEEECC-CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-------eeeEEEEEE
Q psy4653          79 MQVCVFNYN-TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-------THYVMQIVI  150 (229)
Q Consensus        79 ~~i~iwd~~-~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-------~~~v~~~~~  150 (229)
                      +.|++||++ ..+.+..+.+|...|.+++|+|++.+|++++.|++|++||++.+.. ...+..+       ...+..++|
T Consensus       228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~  306 (380)
T 3iz6_a          228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAF  306 (380)
T ss_dssp             SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEE
T ss_pred             CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE-EEEecccccccccccCceEEEEE
Confidence            999999997 4567788899999999999999999999999999999999987643 3333322       234789999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCCCCceEEE----ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGSASPNFTL----EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +| ++.++++|+.|+.|++||...++....+    .+|...|.+++|.  +++.+|+||+.|++|+||++..++
T Consensus       307 s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          307 SI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--SDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC--SSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC--CCCCEEEEeeCCCCEEEEecCCCc
Confidence            98 6899999999999999999888877776    6799999999995  466799999999999999998653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.6e-38  Score=254.14  Aligned_cols=214  Identities=15%  Similarity=0.142  Sum_probs=177.0

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      +..+..+|.+++|+|++++|++|+.|+.|++||+.++  +.+..+..|...|.++.|+|++++|++|+.|+.|++||+++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4456789999999999999999999999999999998  67778888889999999999999999999999999999988


Q ss_pred             cc---eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee--eeeeeec-ceeeEEEEEEcCCCCCEEEEEE
Q psy4653          89 LE---RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA--CQQVFEG-HTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        89 ~~---~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ++   ....+..|...|.+++|+|++.++++++.|+.|++||++....  +...+.+ |...|.++.|+| ++.+|++++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~  165 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGC  165 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEe
Confidence            76   5677788999999999999999999999999999999987643  3455566 999999999998 688999999


Q ss_pred             CCCcEEEEeCCC------------------CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE---
Q psy4653         163 LDRTVKVWQLGS------------------ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC---  221 (229)
Q Consensus       163 ~d~~i~~wd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---  221 (229)
                      .|+.|++||+..                  +.++..+ +|...+.+++|.  +++.+|++++.|+.|++||++++++   
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS--PSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC--TTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            999999999852                  2334444 888899999995  4566899999999999999998876   


Q ss_pred             -EEeeccC
Q psy4653         222 -VQTLESG  228 (229)
Q Consensus       222 -~~~~~~~  228 (229)
                       +.++..|
T Consensus       243 ~~~~~~~~  250 (377)
T 3dwl_C          243 ALITVKLS  250 (377)
T ss_dssp             ECCCEECS
T ss_pred             eeEeecCC
Confidence             6666544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-36  Score=240.95  Aligned_cols=213  Identities=20%  Similarity=0.286  Sum_probs=185.2

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC--CCCeEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE--TNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVC   82 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~   82 (229)
                      ..+.+.+|..+|.+++|+|++++|++|+.||.|++||+.  +++.+..+..|..+|.++.|+++  +++|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            456788999999999999999999999999999999998  55667778888899999999987  89999999999999


Q ss_pred             EEECCCcc--eEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCC----
Q psy4653          83 VFNYNTLE--RFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPK----  153 (229)
Q Consensus        83 iwd~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~----  153 (229)
                      +||+++++  .+..+..|...|.+++|+|+  +.++++++.|+.|++||+..... ....+.+|...|..+.|+|.    
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99998876  67778889999999999999  89999999999999999977632 34456788899999999985    


Q ss_pred             --------CCCEEEEEECCCcEEEEeCCCCCc----eEEEecCCCceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCC
Q psy4653         154 --------DNNTFASASLDRTVKVWQLGSASP----NFTLEGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       154 --------~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~  219 (229)
                              ++.++++++.|+.|++||++....    ...+.+|...+.+++|.+.+. +.+|++++.||.|++||++++
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                    578999999999999999987653    356678999999999954310 568999999999999999886

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.8e-35  Score=236.68  Aligned_cols=207  Identities=20%  Similarity=0.373  Sum_probs=174.7

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+.+.+|...|.+++|+|++.++++|+.|+.|++||+++++.+..+..|..+|.++.|+|++++|++|+.|+.|++||+.
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CcceEEEe---ccCCCceeEEEEcCCC----------CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653          88 TLERFHSF---EAHSDYVRCVAVHPTQ----------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        88 ~~~~~~~~---~~h~~~i~~v~~~~~~----------~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      .. .....   ..|...|.+++|+|++          +++++++.|+.|++||..  ......+.+|...|.++.|+| +
T Consensus       149 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~-~  224 (343)
T 2xzm_R          149 GE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISP-N  224 (343)
T ss_dssp             SC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECT-T
T ss_pred             CC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECC-C
Confidence            43 32232   3688899999999987          789999999999999953  245567788999999999998 6


Q ss_pred             CCEEEEEECCCcEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         155 NNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      +.+|++|+.|+.|++||+.. ..+...+ .+...+.+++|.+  ++.+++ ++.|+.|++||+.+++.+
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp--~~~~la-~~~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNP--KLQWVA-VGTDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS--SSCEEE-EEESSCEEEEESSSCCSC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECC--CCCEEE-EECCCCEEEEEeCCCCCC
Confidence            89999999999999999954 3344444 3445699999954  455555 556888999999876543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-35  Score=234.73  Aligned_cols=215  Identities=13%  Similarity=0.180  Sum_probs=191.7

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ...+.+|..+|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.++.|+|++++|++++.||.|++||++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            34588999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCcee----------eeeeeeccee--eEEEEEE
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAWA----------CQQVFEGHTH--YVMQIVI  150 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~~----------~~~~~~~~~~--~v~~~~~  150 (229)
                      +++.+..+. +...|.+++|+|++.++++++.+     +.|++||+.....          ....+..|..  .+..+.|
T Consensus       105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            999888887 88899999999999999999999     9999999865422          1222334444  7999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +| ++.++++++.|+.|++||+++ ...+..+..|...+.+++|.  +++.+|++++.|+.|++||+++++++..+.
T Consensus       184 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          184 ST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS--PDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             CG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC--CCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            98 688999999999999999988 67788889999999999995  466789999999999999999999888775

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.5e-35  Score=237.04  Aligned_cols=215  Identities=18%  Similarity=0.211  Sum_probs=188.8

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      +..|..+|.+++|+|++++|++++.|+.|++||+.+++  .+..+..|...|.++.|+|++++|++|+.|+.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45689999999999999999999999999999999987  7888888889999999999999999999999999999988


Q ss_pred             cceEE--EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          89 LERFH--SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        89 ~~~~~--~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      ++...  .+..|...|.+++|+|+++++++++.|+.|++||++....   ......+|...+..+.|+| ++.+|++++.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcC
Confidence            76433  3467889999999999999999999999999999976542   2344467888999999998 6789999999


Q ss_pred             CCcEEEEeCC------------------CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         164 DRTVKVWQLG------------------SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       164 d~~i~~wd~~------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      |+.|++||++                  .+.++..+.+|...+.+++|.+  ++.+|++++.|+.|++||+++++++.++
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA--NGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS--SSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC--CCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            9999999953                  5667777888999999999954  5568999999999999999999998888


Q ss_pred             ccC
Q psy4653         226 ESG  228 (229)
Q Consensus       226 ~~~  228 (229)
                      ..+
T Consensus       241 ~~~  243 (372)
T 1k8k_C          241 ASE  243 (372)
T ss_dssp             ECS
T ss_pred             ccC
Confidence            765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.5e-36  Score=238.43  Aligned_cols=217  Identities=22%  Similarity=0.305  Sum_probs=179.9

Q ss_pred             hhhcccCCCceEEEEEcc--CCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeE
Q psy4653           8 KRKLTARSDRVKCCDLHP--TEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQV   81 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i   81 (229)
                      ...+.+|+.+|.+++|+|  ++..|++|+.|++|++||+++++  ....+..|...|.++.|+|+  +++|++|+.|+.|
T Consensus        50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred             EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence            356889999999999976  48899999999999999999874  45566778889999999998  7899999999999


Q ss_pred             EEEECCCcce---EEEeccCCCceeEEEEcCC-----------------CCEEEEEeCCCcEEEEecCCc--eeeeeeee
Q psy4653          82 CVFNYNTLER---FHSFEAHSDYVRCVAVHPT-----------------QPFLLTSSDDMLIKLWNWEKA--WACQQVFE  139 (229)
Q Consensus        82 ~iwd~~~~~~---~~~~~~h~~~i~~v~~~~~-----------------~~~~~s~~~d~~v~lwd~~~~--~~~~~~~~  139 (229)
                      ++||++....   ...+.+|...|.+++|+|+                 +.+|++++.|++|++||++..  ......+.
T Consensus       130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~  209 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE  209 (316)
T ss_dssp             EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred             EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence            9999986532   3456789999999999997                 368999999999999999644  23456678


Q ss_pred             cceeeEEEEEEcCCC---CCEEEEEECCCcEEEEeCCCCC----ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653         140 GHTHYVMQIVINPKD---NNTFASASLDRTVKVWQLGSAS----PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK  212 (229)
Q Consensus       140 ~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~  212 (229)
                      +|...|..+.|+|..   +.+|++|+.|++|++||+....    ....+..|...|.+++|.  +++++|++|+.|++|+
T Consensus       210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~g~~las~~~D~~v~  287 (316)
T 3bg1_A          210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS--ITANILAVSGGDNKVT  287 (316)
T ss_dssp             CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC--TTTCCEEEEESSSCEE
T ss_pred             cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc--CCCCEEEEEcCCCeEE
Confidence            999999999999842   3789999999999999987521    234567788899999995  4566899999999999


Q ss_pred             EEECCC-C--eEEEeec
Q psy4653         213 IWDYQN-K--TCVQTLE  226 (229)
Q Consensus       213 iwd~~~-~--~~~~~~~  226 (229)
                      ||+... +  .+++++.
T Consensus       288 lw~~~~~g~~~~~~~~~  304 (316)
T 3bg1_A          288 LWKESVDGQWVCISDVN  304 (316)
T ss_dssp             EEEECTTSCEEEEEECC
T ss_pred             EEEECCCCcEEEeeecc
Confidence            999863 3  5666655

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.1e-35  Score=239.14  Aligned_cols=217  Identities=18%  Similarity=0.244  Sum_probs=183.7

Q ss_pred             chhhhhcccCCCceEEEEEccCC-CeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcC-CCCEEEEEeCCCe
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVP-RKNWIVTGSDDMQ   80 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~sg~~d~~   80 (229)
                      +.+.+.+.+|..+|.+++|+|++ ++|++|+.||.|++||+.+++....+.  .+...|.++.|+| ++++|++|+.|+.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            34455678999999999999999 899999999999999999988877765  4778999999999 6799999999999


Q ss_pred             EEEEECCCcceEEEeccC---CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653          81 VCVFNYNTLERFHSFEAH---SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT  157 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h---~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (229)
                      |++||++. +.+..+..+   ...|.+++|+|+++++++++.|+.|++||+..  .....+.+|...|.++.|+|....+
T Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEEEECCCCCCE
Confidence            99999985 455555444   47899999999999999999999999999943  3456678899999999999953339


Q ss_pred             EEEEECCCcEEEEeCCC----CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         158 FASASLDRTVKVWQLGS----ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +++|+.|+.|++||+++    ...+..+ +|...+.+++|.+ .++.+|++++.|+.|++||+++++++.++.
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNP-TDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECT-TTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcC-CCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            99999999999999987    4444444 6889999999953 156689999999999999999887766654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.2e-35  Score=251.95  Aligned_cols=211  Identities=17%  Similarity=0.245  Sum_probs=184.6

Q ss_pred             hhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           9 RKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ..+.+|...|.+++|+|+++ .|++|+.|++|++||..+++.+..+..|...|.++.|+|++++|++|+.|+.|++||..
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence            45789999999999999998 48999999999999999998888999999999999999999999999999999999999


Q ss_pred             CcceEEEec-------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ceeeEEEEEEcCCCCCE
Q psy4653          88 TLERFHSFE-------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVINPKDNNT  157 (229)
Q Consensus        88 ~~~~~~~~~-------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~  157 (229)
                      +++.+..+.       +|.+.|.+++|+|++++|++++.|++|++||+...... ..+..   +...+..+.+   ++..
T Consensus       221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~  296 (611)
T 1nr0_A          221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE-KTIPVGTRIEDQQLGIIW---TKQA  296 (611)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEEECCSSGGGCEEEEEE---CSSC
T ss_pred             CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee-eeecCCCCccceeEEEEE---cCCE
Confidence            988887774       79999999999999999999999999999999876433 33322   2334555565   4678


Q ss_pred             EEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         158 FASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +++++.|+.+++||...+.+...+.+|...|.+++|.  +++.+|++++.|++|++||+.++++...+
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s--pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~  362 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRVF  362 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe--CCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence            9999999999999998888788889999999999995  46779999999999999999998876654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.4e-35  Score=247.97  Aligned_cols=201  Identities=30%  Similarity=0.460  Sum_probs=181.8

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ....+.+|..+|.+++|+|++++|++++.|+.|++||. +++.+..+..+...+.++.|+|++++|++++.|+.|++||.
T Consensus       377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~  455 (577)
T 2ymu_A          377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR  455 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            34557789999999999999999999999999999995 56778888889999999999999999999999999999996


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                       +++.+..+.+|...|.+++|+|+++++++++.|+.|++||...  .+...+.+|...|.+++|+| ++.+|++++.|+.
T Consensus       456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~  531 (577)
T 2ymu_A          456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT  531 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSE
T ss_pred             -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEEEeCCCCCEEEEEEcC-CCCEEEEEECcCE
Confidence             4567788899999999999999999999999999999999643  45667889999999999998 6889999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      |++||. +++++..+.+|...|.+++|.  +++.+|+|++.|++|++||
T Consensus       532 v~lwd~-~~~~~~~~~~h~~~v~~~~fs--~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          532 VKLWNR-NGQLLQTLTGHSSSVWGVAFS--PDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECT-TSCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred             EEEEeC-CCCEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCEEEEeC
Confidence            999996 567888899999999999995  4667899999999999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-34  Score=235.14  Aligned_cols=201  Identities=10%  Similarity=0.022  Sum_probs=168.5

Q ss_pred             cCCCceEEEEEccCCCeEEEEE--ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASL--YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      .+.+.|.+++|+|||+++++++  .|+.|++||+++++.+..+. +..+|.++.|+|++++|++++.++ +.+|+..+++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence            4455689999999999987654  68999999999999888875 667899999999999999998665 5666666655


Q ss_pred             eEE--EeccCCCceeEEEEcCCCCEEEEEeCCC----cEEEEecCCcee---eeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          91 RFH--SFEAHSDYVRCVAVHPTQPFLLTSSDDM----LIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        91 ~~~--~~~~h~~~i~~v~~~~~~~~~~s~~~d~----~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      .+.  ....|...|.+++|+|++.++++++.|+    .+++|++.....   ....+.+|..+|.+++|+| ++.+||+|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasg  287 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLA  287 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEE
Confidence            443  3456888999999999999999998887    588888765432   1345678889999999999 78999999


Q ss_pred             ECCCcEEEEeCCCCCceEEE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         162 SLDRTVKVWQLGSASPNFTL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +.|++|++||+++++++..+ ++|...|.+++|+  +++++|+|||.|++|+|||+..
T Consensus       288 s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS--pdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          288 SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS--PDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC--TTSCEEEEEETTSEEEEEECCT
T ss_pred             cCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC--CCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999988875 7899999999994  5677999999999999999853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.1e-34  Score=244.49  Aligned_cols=211  Identities=31%  Similarity=0.455  Sum_probs=189.8

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      ..+.+|..+|.+++|+|+++.+++++.||.|++||. +++.+..+..+..++.++.|+|++++|++|+.|+.|++||. +
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~  415 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N  415 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence            456789999999999999999999999999999995 56778888888899999999999999999999999999995 4


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ++.+..+.+|...|.+++|+|+++++++++.|++|++||+..  .....+.+|...|.+++|+| ++.+|++++.|+.|+
T Consensus       416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~  492 (577)
T 2ymu_A          416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK  492 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEE
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEE
Confidence            577888899999999999999999999999999999999743  34566788999999999998 789999999999999


Q ss_pred             EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +||. +++.+..+.+|...|.+++|.  +++++|++++.||.|++||. +++++.++.+|
T Consensus       493 iw~~-~~~~~~~~~~h~~~v~~l~~s--~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h  548 (577)
T 2ymu_A          493 LWNR-NGQLLQTLTGHSSSVRGVAFS--PDGQTIASASDDKTVKLWNR-NGQLLQTLTGH  548 (577)
T ss_dssp             EEET-TSCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred             EEcC-CCCEEEEEeCCCCCEEEEEEc--CCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence            9996 567888999999999999995  46678999999999999996 57788888776

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-35  Score=240.71  Aligned_cols=219  Identities=13%  Similarity=0.313  Sum_probs=181.9

Q ss_pred             hhhhc-ccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCC---CC---eEEEEEecCcCeEEEEEcCCCCEEEEEeCC
Q psy4653           7 IKRKL-TARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHET---NQ---NVKSFEVCDLPVRAAKFVPRKNWIVTGSDD   78 (229)
Q Consensus         7 ~~~~~-~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d   78 (229)
                      +..++ .+|.++|.+++|+| ++++|++|+.||.|++||+.+   +.   ....+ .|..+|.++.|+|++++|++|+.|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            34456 88999999999999 999999999999999999977   43   22333 478899999999999999999999


Q ss_pred             CeEEEEECC---CcceEEEec----------c--CCCceeEEE--EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-
Q psy4653          79 MQVCVFNYN---TLERFHSFE----------A--HSDYVRCVA--VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-  140 (229)
Q Consensus        79 ~~i~iwd~~---~~~~~~~~~----------~--h~~~i~~v~--~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-  140 (229)
                      |.|++||++   .++....+.          .  +...+.++.  +++++.++++++.|+.|++||++... ....+.+ 
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~  211 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQIIENS  211 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEEEccC
Confidence            999999984   444333222          1  455667776  56789999999999999999998764 4555666 


Q ss_pred             -ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeC--CCcCEEEEeeCCCeEEEEEC
Q psy4653         141 -HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHG--GDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       141 -~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~~~l~s~s~d~~i~iwd~  216 (229)
                       |...|.++.|+| ++.+|++|+.|+.|++||++.++++..+. .|...|.++++.+.  +++.+|++|+.||.|++||+
T Consensus       212 ~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          212 PRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             GGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence             889999999998 68999999999999999999988888876 77778999977543  45669999999999999999


Q ss_pred             CCCeEEEeeccC
Q psy4653         217 QNKTCVQTLESG  228 (229)
Q Consensus       217 ~~~~~~~~~~~~  228 (229)
                      ++++++.++..+
T Consensus       291 ~~~~~~~~~~~~  302 (437)
T 3gre_A          291 VKGHCQYAFINS  302 (437)
T ss_dssp             TTTEEEEEEESS
T ss_pred             CCCcEEEEEEcC
Confidence            999999888754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-34  Score=238.18  Aligned_cols=209  Identities=13%  Similarity=0.149  Sum_probs=180.0

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ....+.+|..+|.+++|+|+++.|++|+.|+.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||+
T Consensus       131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence            34456799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEeccC---CCc---------------------eeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce
Q psy4653          87 NTLERFHSFEAH---SDY---------------------VRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT  142 (229)
Q Consensus        87 ~~~~~~~~~~~h---~~~---------------------i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~  142 (229)
                      ++++.+..+..|   ...                     +.+++|+|+++++++++.|+.|++||++..........+|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  290 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT  290 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence            999888887653   333                     44455688999999999999999999988766666667788


Q ss_pred             eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS-PNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       143 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ..+.++.|+|....+|++|+.|+.|++||++++. ++..+.. |...+.++.+ +  ++.+|++++.|+.|++||+..
T Consensus       291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~--~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A--AGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E--TTEEEEEETTTEEEEEEEECC
T ss_pred             CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C--CCCEEEEecCCccEEEEeccC
Confidence            8999999999543399999999999999998864 4777777 5667788765 3  345899999999999999876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.4e-34  Score=249.35  Aligned_cols=213  Identities=25%  Similarity=0.473  Sum_probs=184.5

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+.+.+|+..|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||..
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CcceEEE---eccCCCceeEEEEcCCC--CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          88 TLERFHS---FEAHSDYVRCVAVHPTQ--PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        88 ~~~~~~~---~~~h~~~i~~v~~~~~~--~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      .......   ..+|...|.+++|+|++  ..+++++.|++|++||++.. .+...+.+|...|.++.|+| ++.+|++|+
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~  580 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSP-DGSLCASGG  580 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeC-CCCEEEEEe
Confidence            5433322   24688899999999986  57999999999999999876 45667789999999999998 689999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .|+.|++||+++++++..+..+ ..+.+++|++  ++.+|++ +.|+.|+|||+++++++..+.
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp--~~~~l~~-~~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP--NRYWLCA-ATEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             TTSBCEEEETTTTEEEECCBCS-SCEEEEEECS--SSSEEEE-EETTEEEEEETTTTEEEEEEC
T ss_pred             CCCeEEEEECCCCceEEEecCC-CcEEEEEEcC--CCcEEEE-EcCCCEEEEECCCCCChhhhc
Confidence            9999999999998887776654 4688999854  4545554 556779999999999888765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=238.15  Aligned_cols=211  Identities=17%  Similarity=0.313  Sum_probs=176.8

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-----------eEEEEEecC------------cCeEEEEEcCCC-
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-----------NVKSFEVCD------------LPVRAAKFVPRK-   69 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~-   69 (229)
                      |.+.|.+++|+|++++|++|+.||.|++||+.+++           ....+..|.            ..|.++.|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            57899999999999999999999999999999877           466777787            789999999998 


Q ss_pred             -CEEEEEeCCCeEEEEECCCcceE---------------------------------------EE-eccCCCceeEEEEc
Q psy4653          70 -NWIVTGSDDMQVCVFNYNTLERF---------------------------------------HS-FEAHSDYVRCVAVH  108 (229)
Q Consensus        70 -~~l~sg~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~i~~v~~~  108 (229)
                       ..|++++.|+.|++||+..++..                                       .. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             79999999999999998754321                                       12 36799999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCceeeee-------eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc----
Q psy4653         109 PTQPFLLTSSDDMLIKLWNWEKAWACQQ-------VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP----  177 (229)
Q Consensus       109 ~~~~~~~s~~~d~~v~lwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----  177 (229)
                      |++++++++ .|+.|++||++.......       .+.+|...|.++.|+|..+.+|++|+.|+.|++||++++..    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999998 799999999985434333       25688999999999995338999999999999999998876    


Q ss_pred             eEEEecCCC------------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC-CeEEEeeccC
Q psy4653         178 NFTLEGHEK------------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQN-KTCVQTLESG  228 (229)
Q Consensus       178 ~~~~~~h~~------------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~  228 (229)
                      ...+..|..            .+.+++|.  +++.+|++++. +.|++||+++ ++++.++..|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFS--HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEEC--TTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             eeEeccCCCccccccccccCceEEEEEEC--CCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence            678888876            89999995  46678999999 9999999997 7777777654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.3e-34  Score=228.11  Aligned_cols=220  Identities=19%  Similarity=0.299  Sum_probs=178.3

Q ss_pred             chhhhhcccCCCceEEEEEccC---CCeEEEEEecCeEEEEEcCC-CCeE-EEEEecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPT---EPWMLASLYNGHVHVWNHET-NQNV-KSFEVCDLPVRAAKFVPRKNWIVTGSDDM   79 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~v~~wd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~d~   79 (229)
                      ++..+.+.+|..+|.+++|+|+   ++.|++|+.||.|++||+.+ ++.+ ..+..|...|.++.|+|++++|++|+.||
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            3455668899999999999999   59999999999999999998 5554 67788899999999999999999999999


Q ss_pred             eEEEEECCCcceEEEeccCCCceeEEEE--cCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce---------------
Q psy4653          80 QVCVFNYNTLERFHSFEAHSDYVRCVAV--HPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT---------------  142 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~--~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~---------------  142 (229)
                      .|++||+++++.+. +..|...|.+++|  +|++.++++++.|+.|++||++.... ...+..+.               
T Consensus       109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  186 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYCADVIYPMAVVA  186 (368)
T ss_dssp             EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSSCEEEEEEETTEEEEE
T ss_pred             cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCCCceEEEecCCeeEEE
Confidence            99999999887665 5669999999999  89999999999999999999976532 22222111               


Q ss_pred             --------------------------eeEEEEEEcCC---CCCEEEEEECCCcEEEEeCCCC---CceEEEecCCC----
Q psy4653         143 --------------------------HYVMQIVINPK---DNNTFASASLDRTVKVWQLGSA---SPNFTLEGHEK----  186 (229)
Q Consensus       143 --------------------------~~v~~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~----  186 (229)
                                                ..+..+.+.+.   ....+++++.|+.|++||++..   .....+.+|..    
T Consensus       187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  266 (368)
T 3mmy_A          187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN  266 (368)
T ss_dssp             EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred             eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence                                      11222222221   1123999999999999999877   55677788765    


Q ss_pred             --------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         187 --------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       187 --------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                              .+.+++|.+  ++.+|++|+.||.|++||+++++++.++..|
T Consensus       267 ~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (368)
T 3mmy_A          267 TSAPQDIYAVNGIAFHP--VHGTLATVGSDGRFSFWDKDARTKLKTSEQL  314 (368)
T ss_dssp             -CCCEEECCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             ccccccccceEEEEEec--CCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence                    699999854  5668999999999999999999999988765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-33  Score=235.48  Aligned_cols=213  Identities=24%  Similarity=0.409  Sum_probs=187.8

Q ss_pred             hhhcccCCCce-EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           8 KRKLTARSDRV-KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         8 ~~~~~~~~~~v-~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ...+.+|...| .|+.+  +++.+++|+.||.|++||+.+++.+..+..|...|.++.|+|++ .|++|+.||.|++||+
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence            34678999986 55555  56799999999999999999999999999999999999999887 9999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEc--CCCCEEEEEeCCCcEEEEecCCceee----------------------eeeeecce
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVH--PTQPFLLTSSDDMLIKLWNWEKAWAC----------------------QQVFEGHT  142 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~--~~~~~~~s~~~d~~v~lwd~~~~~~~----------------------~~~~~~~~  142 (229)
                      ++++.+..+.+|...|.+++|+  +++.++++++.|+.|++||+......                      ...+.+|.
T Consensus       191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            9999999999999999999998  57789999999999999999765322                      34566787


Q ss_pred             eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       143 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      ..+..+.  + ++.++++|+.|+.|++||+++.+++..+.+|...+.+++|.+  ++.+|++|+.||.|++||+++++++
T Consensus       271 ~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          271 ASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH--ERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             SCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            7887774  3 568999999999999999999999999999999999999964  5568999999999999999999999


Q ss_pred             EeeccC
Q psy4653         223 QTLESG  228 (229)
Q Consensus       223 ~~~~~~  228 (229)
                      .+++.|
T Consensus       346 ~~~~~h  351 (464)
T 3v7d_B          346 YTLQGH  351 (464)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998865

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.7e-34  Score=233.26  Aligned_cols=216  Identities=12%  Similarity=0.176  Sum_probs=189.7

Q ss_pred             hhhhhcccCCCceEEEEEccC----C---CeEEEEEecCeEEEEEcCCCCe-----EEEEEec-----CcCeEEEEEc--
Q psy4653           6 DIKRKLTARSDRVKCCDLHPT----E---PWMLASLYNGHVHVWNHETNQN-----VKSFEVC-----DLPVRAAKFV--   66 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~----~---~~l~~~~~dg~v~~wd~~~~~~-----~~~~~~~-----~~~v~~~~~~--   66 (229)
                      .....+.+|..+|.+++|+|+    +   ..|++++.||.|++||+.+++.     ...+..+     ...|.++.|+  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            356668899999999999999    9   9999999999999999999886     7777777     4789999999  


Q ss_pred             --CCCCE-EEEEeCCCeEEEEECCC------cceEE-----Ee-------ccCCCceeEEEEcCCCCEEEEEeCCCcEEE
Q psy4653          67 --PRKNW-IVTGSDDMQVCVFNYNT------LERFH-----SF-------EAHSDYVRCVAVHPTQPFLLTSSDDMLIKL  125 (229)
Q Consensus        67 --~~~~~-l~sg~~d~~i~iwd~~~------~~~~~-----~~-------~~h~~~i~~v~~~~~~~~~~s~~~d~~v~l  125 (229)
                        |++++ |++|+.||.|++||+++      ++.+.     .+       ..|...|.+++|+|++ ++++++.|+.|++
T Consensus       133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI  211 (397)
T ss_dssp             C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred             cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence              99999 99999999999999988      66555     66       3488899999999999 9999999999999


Q ss_pred             EecCCceeeeeeeec---c---eeeEEEEEEcCCCCCEEEEEECC---CcEEEEeCCCCCceEEEec-------------
Q psy4653         126 WNWEKAWACQQVFEG---H---THYVMQIVINPKDNNTFASASLD---RTVKVWQLGSASPNFTLEG-------------  183 (229)
Q Consensus       126 wd~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~-------------  183 (229)
                      ||++.. .....+..   |   ...+..+.|+| ++.+|++++.|   +.|++||+++.+++..+.+             
T Consensus       212 ~d~~~~-~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          212 SELSTL-RPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EETTTT-EEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EECCCC-ceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            999876 44566677   8   88999999998 68899999999   9999999999999999988             


Q ss_pred             CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       184 h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |...+.+++|.+  ++.+|++++.|+.|++||+++++++.++.
T Consensus       290 ~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          290 HSSWVMSLSFND--SGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             BSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cCCcEEEEEECC--CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            999999999954  56699999999999999999999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-34  Score=233.09  Aligned_cols=204  Identities=17%  Similarity=0.220  Sum_probs=179.7

Q ss_pred             CCCceEEEEEccC----CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q psy4653          14 RSDRVKCCDLHPT----EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        14 ~~~~v~~~~~~p~----~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      |...|.+++|+|+    +++|++|+.||.|++||+.+++.+..+..+..+|.++.|+| ++++|++|+.||.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6678999999999    66899999999999999999999999998999999999999 899999999999999999999


Q ss_pred             cceEEEe---ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee---------------------------eee
Q psy4653          89 LERFHSF---EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ---------------------------QVF  138 (229)
Q Consensus        89 ~~~~~~~---~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~---------------------------~~~  138 (229)
                      ++.+..+   ..|...|.+++|+|++.++++++.|+.|++||++......                           ...
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            8888887   6899999999999999999999999999999997642211                           112


Q ss_pred             ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc--------------eEEEecCCCceEEEEEEeCCCcCEEEE
Q psy4653         139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP--------------NFTLEGHEKGVNCVDYYHGGDKPYLIS  204 (229)
Q Consensus       139 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~~~l~s  204 (229)
                      .+|...|.++.|+   +.++++++.|+.|++||+++...              +..+..|...+.+++|.+.+++.+|++
T Consensus       228 ~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          228 DIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             SSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             cCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence            2388889999997   56999999999999999987644              667788988999999987644779999


Q ss_pred             eeCCCeEEEEECCCCe
Q psy4653         205 GADDRLVKIWDYQNKT  220 (229)
Q Consensus       205 ~s~d~~i~iwd~~~~~  220 (229)
                      |+.||.|++||+++++
T Consensus       305 ~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          305 GNQVGKLYVWDLEVED  320 (366)
T ss_dssp             ECTTSCEEEEECCSSS
T ss_pred             EecCCcEEEEECCCCC
Confidence            9999999999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.4e-34  Score=233.13  Aligned_cols=210  Identities=15%  Similarity=0.185  Sum_probs=179.8

Q ss_pred             hhhcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCC-------CeEEEEEecCcCeEEEEEcCCC-CEEEEEeCC
Q psy4653           8 KRKLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETN-------QNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDD   78 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d   78 (229)
                      ...+.+|..+|.+++|+| ++..|++|+.||.|++||+.++       +.+..+..|...|.++.|+|++ ++|++|+.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            445789999999999999 8999999999999999999987       5677888899999999999998 799999999


Q ss_pred             CeEEEEECCCcceEEEe--ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-EEEEEEcCCCC
Q psy4653          79 MQVCVFNYNTLERFHSF--EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-VMQIVINPKDN  155 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~  155 (229)
                      +.|++||+++++.+..+  ..|...|.+++|+|++.++++++.|+.|++||++..........+|.+. +..+.|+| ++
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  232 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EG  232 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TT
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CC
Confidence            99999999999998888  7899999999999999999999999999999998775443332677665 88899998 67


Q ss_pred             CEEEEE---ECCCcEEEEeCCCCCc-eEEEe-cCCCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECCCCe
Q psy4653         156 NTFASA---SLDRTVKVWQLGSASP-NFTLE-GHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQNKT  220 (229)
Q Consensus       156 ~~l~s~---~~d~~i~~wd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~  220 (229)
                      .++++|   +.|+.|++||+++... +.... .|...+.+++|.+  ++.+|+ +|+.|+.|++||+++++
T Consensus       233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP--DTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET--TTTEEEEEETTCSCEEEEEECSST
T ss_pred             cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC--CCCEEEEEEcCCCeEEEEEecCCC
Confidence            888888   7999999999987654 33333 4667789999864  445664 66689999999999877

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-34  Score=230.71  Aligned_cols=205  Identities=16%  Similarity=0.311  Sum_probs=176.9

Q ss_pred             cccCCCceEEEEEccC----CCeEEEEEecCeEEEEEcCCCCeEEEEEec-----CcCeEEEEEcCC----CCEEEEEeC
Q psy4653          11 LTARSDRVKCCDLHPT----EPWMLASLYNGHVHVWNHETNQNVKSFEVC-----DLPVRAAKFVPR----KNWIVTGSD   77 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~----~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~----~~~l~sg~~   77 (229)
                      ..+|..+|.+++|+|+    ...+++++.++.|++||+.+++.+..+..+     ...+.++.|+|+    +++|++|+.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4489999999999994    567888888999999999988877766543     367999999998    679999999


Q ss_pred             CCeEEEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeee---ecceeeEEEEEEcCC
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVF---EGHTHYVMQIVINPK  153 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~---~~~~~~v~~~~~~~~  153 (229)
                      ||.|++||+++++.+..+.+|...|.+++|+| ++.++++++.|+.|++||++.... ...+   .+|...|..+.|+| 
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~-  171 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDL-  171 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECT-
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECC-
Confidence            99999999999999999999999999999999 899999999999999999987643 4444   67899999999998 


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCceEEEe----------------------------cCCCceEEEEEEeCCCcCEEEEe
Q psy4653         154 DNNTFASASLDRTVKVWQLGSASPNFTLE----------------------------GHEKGVNCVDYYHGGDKPYLISG  205 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------------------------~h~~~v~~~~~~~~~~~~~l~s~  205 (229)
                      ++.+|++++.|+.|++||+++.+....+.                            .|...+.+++|.    +.+|+++
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~  247 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----GDLILSK  247 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----TTEEEEE
T ss_pred             CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----CCEEEEE
Confidence            68899999999999999998764433332                            388899999995    3489999


Q ss_pred             eCCCeEEEEECCCCeE
Q psy4653         206 ADDRLVKIWDYQNKTC  221 (229)
Q Consensus       206 s~d~~i~iwd~~~~~~  221 (229)
                      +.|+.|++||+++++.
T Consensus       248 ~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          248 SCENAIVCWKPGKMED  263 (366)
T ss_dssp             CSSSEEEEEEESSTTC
T ss_pred             ecCCEEEEEeCCCccc
Confidence            9999999999987643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-32  Score=218.43  Aligned_cols=207  Identities=15%  Similarity=0.276  Sum_probs=183.5

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      +|..+|.+++|+|+++.+++++.||.|++||+++++  ....+..+...+.++.|+|++++|++++.|+.|++||+++++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            789999999999999999999999999999999987  455666777889999999999999999999999999999999


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                      .+..+..|...|.+++|+|+++++++++.|+.|++||++....... + .+...+..+.|+| ++.++++++.|+.|++|
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-H-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-E-ECSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-e-cCCCceEEEEECC-CCCEEEEEcCCCcEEEE
Confidence            9999999999999999999999999999999999999987644333 3 3667799999998 68899999999999999


Q ss_pred             eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      |++..+. ..+..|...+.+++|.  +++.+|++++.||.|++||+++++.+...
T Consensus       252 ~~~~~~~-~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          252 HVNKPDK-YQLHLHESCVLSLKFA--YCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             ETTSSCE-EEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCCCCe-EEEcCCccceeEEEEC--CCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence            9987654 5678899999999995  46678999999999999999998877554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-34  Score=234.02  Aligned_cols=217  Identities=10%  Similarity=0.169  Sum_probs=188.5

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC------eEEEEEecCcCeEEEEEcCC----C---CE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ------NVKSFEVCDLPVRAAKFVPR----K---NW   71 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~   71 (229)
                      +...+.+.+|..+|.+++|+|  +.|++|+.||.|++||+.+++      .+..+..+..+|.++.|+|+    +   ++
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            356677899999999999999  789999999999999999988      67888888899999999999    9   99


Q ss_pred             EEEEeCCCeEEEEECCCcce-----EEEeccC-----CCceeEEEEc----CCCCE-EEEEeCCCcEEEEecCC------
Q psy4653          72 IVTGSDDMQVCVFNYNTLER-----FHSFEAH-----SDYVRCVAVH----PTQPF-LLTSSDDMLIKLWNWEK------  130 (229)
Q Consensus        72 l~sg~~d~~i~iwd~~~~~~-----~~~~~~h-----~~~i~~v~~~----~~~~~-~~s~~~d~~v~lwd~~~------  130 (229)
                      |++|+.|+.|++||+++++.     +..+..|     ...|.+++|+    |++.+ +++++.|+.|++||++.      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999988776     7888888     5899999999    99999 99999999999999976      


Q ss_pred             ceeee----eee-------ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec---C---CCceEEEEE
Q psy4653         131 AWACQ----QVF-------EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---H---EKGVNCVDY  193 (229)
Q Consensus       131 ~~~~~----~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h---~~~v~~~~~  193 (229)
                      .....    ..+       ..|...+.++.|+| ++ ++++++.|+.|++||+++.+++..+..   |   ...+.+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence            32222    134       34788899999998 56 999999999999999999998899988   8   889999999


Q ss_pred             EeCCCcCEEEEeeCC---CeEEEEECCCCeEEEeecc
Q psy4653         194 YHGGDKPYLISGADD---RLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       194 ~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~  227 (229)
                      .+  ++.+|++++.|   +.|++||+++++++.++..
T Consensus       242 ~~--~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          242 SP--QGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  276 (397)
T ss_dssp             CS--STTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             CC--CCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence            54  56689999999   9999999999999988875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-34  Score=234.97  Aligned_cols=207  Identities=11%  Similarity=0.159  Sum_probs=170.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      +..+.+.+|..+|.+++|+|++++|++++.|+.|++||+.+++   ....+..+...+.++.|+|++++|++|+.|+.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            4556788999999999999999999999999999999999977   5566667888999999999999999999999999


Q ss_pred             EEECCCcc---eEEEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc-----------------eeeeeeeecc
Q psy4653          83 VFNYNTLE---RFHSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA-----------------WACQQVFEGH  141 (229)
Q Consensus        83 iwd~~~~~---~~~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~-----------------~~~~~~~~~~  141 (229)
                      +||+++++   ....+.. |...|.+++|+|++.++++++.|+.|++||+...                 ..+...+ +|
T Consensus       126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  204 (377)
T 3dwl_C          126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS  204 (377)
T ss_dssp             ECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC
T ss_pred             EEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC
Confidence            99998876   3667777 9999999999999999999999999999998521                 2334445 88


Q ss_pred             eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc----eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP----NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       142 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      ...|.++.|+| ++.+|++++.|+.|++||+.+++.    +..+.+|...+.+++|.+  ++.+|++|+.|+.+ +|+..
T Consensus       205 ~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          205 GGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN--ESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE--TTEEEEEESSSSEE-EECCC
T ss_pred             CceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC--CCCEEEEEcCCcEE-EEEeC
Confidence            99999999998 688999999999999999998887    788899999999999976  45588888877666 66665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-33  Score=219.47  Aligned_cols=214  Identities=18%  Similarity=0.250  Sum_probs=187.3

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      .+++.+.+.+|..+|.+++| |+++.|++++.||.|++||+.+++....+..+...+.++.|+|++++|++|+.|+.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            35677889999999999999 99999999999999999999999988888889999999999999999999999999999


Q ss_pred             EECCCc---ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          84 FNYNTL---ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        84 wd~~~~---~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      |++...   +.+..+..|...|.++.|  ++.++++++.|+.|++||.   ......+..|...+..+.+.|.++.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            998653   557778899999999999  5679999999999999992   24466677899999999998867899999


Q ss_pred             EECCCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         161 ASLDRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++.|+.|++||  .......+.. |...+.+++|.+.+  . +++++.|+.|++||+++++++.++..|
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~  224 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGH  224 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence            99999999999  3445666666 88889999997643  3 899999999999999999999888755

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=235.65  Aligned_cols=213  Identities=14%  Similarity=0.189  Sum_probs=188.0

Q ss_pred             hhhhcccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCC------eEEE---EEecCcCeEEEEEcCC-CCEEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQ------NVKS---FEVCDLPVRAAKFVPR-KNWIVTG   75 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~sg   75 (229)
                      ....+.+|..+|.+++|+|+ +..|++++.||.|++||+.+++      ....   +..+...+.++.|+|+ +++|+++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence            45567899999999999998 8899999999999999999886      3222   3456778999999999 7899999


Q ss_pred             eCCCeEEEEECCCcceEEEeccC------CCceeEEEEcCCC-CEEEEEeCCC---cEEEEecCCceeeeeeee-cceee
Q psy4653          76 SDDMQVCVFNYNTLERFHSFEAH------SDYVRCVAVHPTQ-PFLLTSSDDM---LIKLWNWEKAWACQQVFE-GHTHY  144 (229)
Q Consensus        76 ~~d~~i~iwd~~~~~~~~~~~~h------~~~i~~v~~~~~~-~~~~s~~~d~---~v~lwd~~~~~~~~~~~~-~~~~~  144 (229)
                      +.|+.|++||+++++.+..+..|      ...|.+++|+|++ .++++++.|+   .|++||++........+. +|...
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~  264 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG  264 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred             cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence            99999999999999888888766      7889999999997 5899999998   999999987655666677 89999


Q ss_pred             EEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCc-CEEEEeeCCCeEEEEECCCCeE
Q psy4653         145 VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK-PYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       145 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      |..+.|+|.++.+|++++.|+.|++||+++++++..+.+|...+.+++|.+  ++ .+|++++.|+.|++||+++++.
T Consensus       265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP--EAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT--TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC--CCCCEEEEEecCCcEEEEEccCCCC
Confidence            999999986788999999999999999999999999999999999999954  44 6899999999999999987754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-34  Score=253.63  Aligned_cols=207  Identities=13%  Similarity=0.152  Sum_probs=180.6

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      .||...|.+++|+|++++||+|+.||.|++||..+.+....+. +..+|.++.|+| +++|++++.|+.|++||+++++.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            4899999999999999999999999999999998876655433 567899999999 88999999999999999999988


Q ss_pred             EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee----------eeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ----------QVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      +..+. |...|++++|+|++.++++|+.||.|++||++......          ..+.+|.++|.+++|+|.++.++++|
T Consensus        92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A           92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred             EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence            88876 77889999999999999999999999999998764321          23467889999999999666799999


Q ss_pred             ECCCcEEEEeCCCCCceEEEecC------------------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         162 SLDRTVKVWQLGSASPNFTLEGH------------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      +.|+.| +||+++.+++..+..|                  ...|.+++|.  +++.+|++|+.||+|++||+++++++.
T Consensus       171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs--pdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH--PNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--TTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            999999 9999998888777665                  4679999995  456799999999999999999998876


Q ss_pred             e
Q psy4653         224 T  224 (229)
Q Consensus       224 ~  224 (229)
                      .
T Consensus       248 ~  248 (902)
T 2oaj_A          248 A  248 (902)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-34  Score=232.97  Aligned_cols=214  Identities=17%  Similarity=0.333  Sum_probs=185.3

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC----CCeEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET----NQNVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~   87 (229)
                      .|..+|.+++|+|++++|++++.||.|++||+.+    .+.+..+..|..+|.++.|+|+ +++|++|+.|+.|++||++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            5889999999999999999999999999999988    4577777888899999999998 8999999999999999998


Q ss_pred             Ccc------eE---EEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecc------eeeEEEEEEc
Q psy4653          88 TLE------RF---HSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGH------THYVMQIVIN  151 (229)
Q Consensus        88 ~~~------~~---~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~------~~~v~~~~~~  151 (229)
                      +.+      ..   ..+..|...|.+++|+|+ +.++++++.|+.|++||++.... ...+..+      ...+..+.|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccCCceEEEEEC
Confidence            776      22   234678899999999999 78999999999999999987643 3444444      7789999999


Q ss_pred             CCCCCEEEEEECCC---cEEEEeCCCC-CceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         152 PKDNNTFASASLDR---TVKVWQLGSA-SPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       152 ~~~~~~l~s~~~d~---~i~~wd~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |....++++++.|+   .|++||+++. .+...+. +|...+.+++|.+. ++.+|++++.|+.|++||+++++++.++.
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ-DEHLLLSSGRDNTVLLWNPESAEQLSQFP  302 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS-CSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC-CCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence            96557999999999   9999999886 6677777 89999999999542 45689999999999999999999999887


Q ss_pred             cC
Q psy4653         227 SG  228 (229)
Q Consensus       227 ~~  228 (229)
                      .|
T Consensus       303 ~~  304 (416)
T 2pm9_A          303 AR  304 (416)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=243.73  Aligned_cols=204  Identities=13%  Similarity=0.126  Sum_probs=172.1

Q ss_pred             hcccCCCceEEEEEccC------CCeEEEEEecCeEEEEEcCCCCe-----------EEEEEecCcCeEEEEEcCCCCEE
Q psy4653          10 KLTARSDRVKCCDLHPT------EPWMLASLYNGHVHVWNHETNQN-----------VKSFEVCDLPVRAAKFVPRKNWI   72 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~------~~~l~~~~~dg~v~~wd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l   72 (229)
                      .+.+|...|.+++|+|+      +.+|++++.||+|++||+.+++.           ...+..+...|.+++|+++ +.|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence            35678899999999997      56899999999999999987642           2355667789999999985 589


Q ss_pred             EEEeCCCeEEEEECCCcc-eEEEeccCCCceeEE--EEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeeccee--eEE
Q psy4653          73 VTGSDDMQVCVFNYNTLE-RFHSFEAHSDYVRCV--AVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH--YVM  146 (229)
Q Consensus        73 ~sg~~d~~i~iwd~~~~~-~~~~~~~h~~~i~~v--~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~--~v~  146 (229)
                      ++|+.||.|++||++++. +...+.+|.+.|.+|  .|+|++ .+|++++.|++|+|||++... +...+.+|..  .+.
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCccc
Confidence            999999999999998763 455678999999999  578887 899999999999999997653 3344555543  477


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .++|+| ++..+++++.|++|++||++++..+..+.+|...|.+++|+  +++++|++|+.|++|++||...
T Consensus       360 ~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S--p~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          360 PVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS--RLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC--SSCCBCEEEETTTEEECCBSCS
T ss_pred             ceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC--CCCCeEEEEECCCEEEEEechH
Confidence            899999 57889999999999999999988888899999999999995  4566899999999999999754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-33  Score=229.50  Aligned_cols=215  Identities=16%  Similarity=0.226  Sum_probs=180.4

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+.+.+| ..+....|+|++..|++|+.||.|++||+.+++....+..|...|.++.|+|++++|++|+.|+.|++||++
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            3345555 455666789999999999999999999999998888777888999999999999999999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ceeeEEEEEE--------------
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVI--------------  150 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~~~v~~~~~--------------  150 (229)
                      +++.+..+.+|...|.+++|+|++.++++++.|+.|++||++.... ...+..   +...+..+.+              
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            9998899999999999999999999999999999999999987643 334432   4445555554              


Q ss_pred             -------cCCCCCEEEEEECCCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeE
Q psy4653         151 -------NPKDNNTFASASLDRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       151 -------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~  221 (229)
                             +| ++.++++|+.|+.|++||++++.....+. .|...+.+++|.+  ++. +|++|+.||.|++||+++++.
T Consensus       249 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          249 KKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG--NNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             CCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             cccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC--CCCCEEEEEeCCCeEEEEEcCCCcC
Confidence                   55 67899999999999999999888777765 4788899999954  444 899999999999999998743


Q ss_pred             -EEeecc
Q psy4653         222 -VQTLES  227 (229)
Q Consensus       222 -~~~~~~  227 (229)
                       +..+..
T Consensus       326 ~~~~~~~  332 (420)
T 3vl1_A          326 PVGEFLI  332 (420)
T ss_dssp             CSEEEEE
T ss_pred             chhhhhc
Confidence             555543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=225.59  Aligned_cols=212  Identities=17%  Similarity=0.247  Sum_probs=180.7

Q ss_pred             ccCCCceEEEEEccCCC-eEEEEEecCeEEEEEc----CCCC------eEEEEEe----------cCcCeEEEEEcCCCC
Q psy4653          12 TARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNH----ETNQ------NVKSFEV----------CDLPVRAAKFVPRKN   70 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~   70 (229)
                      ..|..+|.+++|+|+++ +|++|+.||.|++||+    .+++      ....+..          +...|.++.|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34668999999999999 9999999999999999    8888      4444443          466899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee---------------
Q psy4653          71 WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ---------------  135 (229)
Q Consensus        71 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~---------------  135 (229)
                      +|++|+.||.|++|| .+++.+..+..|...|.+++|+|+++++++++.|+.|++||+.......               
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            999999999999999 6677888899999999999999999999999999999999986543211               


Q ss_pred             ----------------------------------------eeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653         136 ----------------------------------------QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus       136 ----------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                                                              ..+.+|...+..+.|+| ++.+|++++.|+.|++||++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSB
T ss_pred             cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence                                                    12345677899999998 6789999999999999999999


Q ss_pred             CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       176 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +....+..|...+.+++|.+  ++ ++++++.|+.|++||+++++++..+..+
T Consensus       280 ~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~  329 (425)
T 1r5m_A          280 NSQNCFYGHSQSIVSASWVG--DD-KVISCSMDGSVRLWSLKQNTLLALSIVD  329 (425)
T ss_dssp             SCSEEECCCSSCEEEEEEET--TT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred             ccceEecCCCccEEEEEECC--CC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence            98999999999999999965  44 8999999999999999999998887654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-34  Score=250.40  Aligned_cols=213  Identities=20%  Similarity=0.279  Sum_probs=181.9

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcC--CCCeEEEEEecCcCeEEEEEcCC--CCEEEEEeCCCeEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE--TNQNVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDMQVCV   83 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~~i~i   83 (229)
                      ...+.+|..+|.+++|+|+++.+++|+.||.|++||+.  +++.+..+..|..+|.++.|+|+  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            35678999999999999999999999999999999998  45667778888899999999988  899999999999999


Q ss_pred             EECCCcc--eEEEeccCCCceeEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEcCC-----
Q psy4653          84 FNYNTLE--RFHSFEAHSDYVRCVAVHPT--QPFLLTSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVINPK-----  153 (229)
Q Consensus        84 wd~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~~~s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~-----  153 (229)
                      ||+.+++  .+..+..|...|.+++|+|+  +.++++++.|+.|++||++.... ....+.+|...|..+.|+|.     
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9998876  67778889999999999999  99999999999999999976532 34456788899999999985     


Q ss_pred             -------CCCEEEEEECCCcEEEEeCCCCC----ceEEEecCCCceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCCe
Q psy4653         154 -------DNNTFASASLDRTVKVWQLGSAS----PNFTLEGHEKGVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       154 -------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                             ++.++++|+.|+.|++||++++.    ....+.+|...|.+++|.+.+. +.+|++|+.||.|++||+++++
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                   47899999999999999998763    4456778999999999964310 5689999999999999998763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.8e-33  Score=230.65  Aligned_cols=212  Identities=22%  Similarity=0.369  Sum_probs=186.6

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEc--CCCCEEEEEeCCCeEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV--PRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~d~~i~i   83 (229)
                      +....+.+|..+|.+++|+|++ .+++|+.||.|++||+++++.+..+..|...|.++.|.  +++++|++|+.|+.|++
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v  231 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  231 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence            3445678999999999999988 89999999999999999999999999899999999998  56789999999999999


Q ss_pred             EECCCcce-----------------------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec
Q psy4653          84 FNYNTLER-----------------------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG  140 (229)
Q Consensus        84 wd~~~~~~-----------------------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~  140 (229)
                      ||+++...                       +..+.+|...|.++  ++++.++++++.|+.|++||+... .....+.+
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~  308 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSG  308 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-EEEEEECC
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC
Confidence            99986542                       45567788888877  677889999999999999999876 45666788


Q ss_pred             ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         141 HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       141 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      |...|.++.++| ++.++++|+.|+.|++||+++++++..+.+|...+.++++.    +.+|++|+.||.|++||+++++
T Consensus       309 ~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          309 HTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             CSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc----CCEEEEEeCCCcEEEEECCCCc
Confidence            999999999998 68899999999999999999999999999999999999983    3589999999999999999887


Q ss_pred             EEEeec
Q psy4653         221 CVQTLE  226 (229)
Q Consensus       221 ~~~~~~  226 (229)
                      ......
T Consensus       384 ~~~~~~  389 (464)
T 3v7d_B          384 RKFSYH  389 (464)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            665543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-33  Score=227.70  Aligned_cols=212  Identities=19%  Similarity=0.281  Sum_probs=184.5

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      .+|.+.+.+..+++++..+++++.|+.|++||+.+++....+.. +...|.++.|+|++++|++|+.||.|++||+++++
T Consensus        88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  167 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT  167 (401)
T ss_dssp             TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence            36666654444444456699999999999999999998877766 57789999999999999999999999999999999


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                      .+..+.+|...|.+++|+  +.++++++.|+.|++||++........+.+|...|..+.|+| ++.+|++|+.|+.|++|
T Consensus       168 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             EEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence            999999999999999994  579999999999999999865566777889999999999998 78999999999999999


Q ss_pred             eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee--CCCeEEEEECCCCeEEEeecc
Q psy4653         171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA--DDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      |+++..+...+..|...+.+++|.+.+ ..++++|+  .|+.|++||+++++++.+++.
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~-~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~  302 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQ-SNLLATGGGTMDKQIHFWNAATGARVNTVDA  302 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTS-TTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCC-CCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            999999999999999999999996533 34777765  899999999999999888764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=226.69  Aligned_cols=212  Identities=20%  Similarity=0.333  Sum_probs=179.6

Q ss_pred             hhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCC
Q psy4653           6 DIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDM   79 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~   79 (229)
                      +..+.+.+|..+|.+++|+|+  +..|++++.||.|++||+.+++  .+..+..+...+.++.|+|+  +++|++|+.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  125 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  125 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence            445568899999999999987  8999999999999999999987  56667778889999999999  99999999999


Q ss_pred             eEEEEECCCcc--eEEEeccCCCceeEEEEcC-------------CCCEEEEEeCCCcEEEEecCCce---eeeeeeecc
Q psy4653          80 QVCVFNYNTLE--RFHSFEAHSDYVRCVAVHP-------------TQPFLLTSSDDMLIKLWNWEKAW---ACQQVFEGH  141 (229)
Q Consensus        80 ~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~-------------~~~~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~  141 (229)
                      .|++||+....  ....+..|...|.+++|+|             ++.++++++.|+.|++||++...   .....+.+|
T Consensus       126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence            99999998763  3456678999999999999             68999999999999999986543   244567789


Q ss_pred             eeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCCCce-----EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653         142 THYVMQIVINPKD--NNTFASASLDRTVKVWQLGSASPN-----FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  214 (229)
Q Consensus       142 ~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iw  214 (229)
                      ..+|.++.|+|..  +.+|++++.|+.|++||++.+...     .....|...+.+++|.+  ++.+|++++.||.|++|
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS--SSCCEEEEESSSSEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC--CCCEEEEecCCCcEEEE
Confidence            9999999999943  789999999999999999876421     12234777899999954  56689999999999999


Q ss_pred             ECCCC
Q psy4653         215 DYQNK  219 (229)
Q Consensus       215 d~~~~  219 (229)
                      |++.+
T Consensus       284 ~~~~~  288 (379)
T 3jrp_A          284 KENLE  288 (379)
T ss_dssp             EEEET
T ss_pred             eCCCC
Confidence            99743

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-32  Score=218.72  Aligned_cols=206  Identities=16%  Similarity=0.280  Sum_probs=178.9

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE---EEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV---KSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ..+|..+|.+++|+|+++++++++ ||.|++||+.+++..   ..+.  .+...+.++.|+|++++|++|+.|+.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            347999999999999999999998 999999999887543   3333  5677899999999999999999999999999


Q ss_pred             CCCcc--eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          86 YNTLE--RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        86 ~~~~~--~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      +++++  ....+..|...|.+++|+|+++++++++.|+.|++||++.. .....+.+|...+..+.|+| ++.++++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  203 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISN-DGTKLWTGGL  203 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECC-CCCEEEEEec
Confidence            98876  56677889999999999999999999999999999999876 44566778999999999998 6789999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      |+.|++||+++++.+..+. +...+.+++|.  +++.+|++++.|+.|++||+++++..
T Consensus       204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s--~~~~~l~~~~~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYC--PTGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             CCcEEEEECCCCceEeeec-CCCceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCCeE
Confidence            9999999999887776654 56779999984  45678999999999999999988754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.3e-33  Score=221.57  Aligned_cols=216  Identities=15%  Similarity=0.252  Sum_probs=182.1

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVF   84 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iw   84 (229)
                      ....+|.+.|.+++|+|+++.|++++.||.|++||+.+++   ....+..+...+.++.|+|+++ +|++|+.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3356899999999999999999999999999999999887   3445557888999999999999 99999999999999


Q ss_pred             EC-CCcceEEEecc--CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC---------ceee------------------
Q psy4653          85 NY-NTLERFHSFEA--HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK---------AWAC------------------  134 (229)
Q Consensus        85 d~-~~~~~~~~~~~--h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~---------~~~~------------------  134 (229)
                      |+ ++++. ..+.+  |...|.+++|+| +.++++++.|+.|++||++.         ....                  
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence            99 77654 67788  999999999999 99999999999999999764         2110                  


Q ss_pred             -----------------------eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC------CceEEEecCC
Q psy4653         135 -----------------------QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA------SPNFTLEGHE  185 (229)
Q Consensus       135 -----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~h~  185 (229)
                                             ......|...+.++.|+|.++.++++++.|+.|++|++...      .+...+.+|.
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence                                   00112345568888998724689999999999999999876      7788888886


Q ss_pred             C---------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         186 K---------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       186 ~---------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .         .+.+++|.+  ++.+|++|+.||.|++||+++++++.++..+
T Consensus       243 ~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             ccccccccceeEEEEEEcC--CCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            5         899999854  5668999999999999999999999988765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.9e-33  Score=231.52  Aligned_cols=213  Identities=18%  Similarity=0.377  Sum_probs=183.2

Q ss_pred             chhhhhcccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCe-------EEEEEecCcCeEEEEEcC-CCCEEEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQN-------VKSFEVCDLPVRAAKFVP-RKNWIVTG   75 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~sg   75 (229)
                      ......+.+|..+|.+++|+|+++ .|++|+.||.|++||+.++..       ...+..|...|.++.|+| ++++|+++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            455566889999999999999998 999999999999999988432       345556778899999999 67899999


Q ss_pred             eCCCeEEEEECCCc---ceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653          76 SDDMQVCVFNYNTL---ERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        76 ~~d~~i~iwd~~~~---~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                      +.|+.|++||+++.   +.+..+..|...|++++|+|++. ++++++.|+.|++||++........+.+|...|.++.|+
T Consensus       251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s  330 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  330 (430)
T ss_dssp             ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC
Confidence            99999999999876   56677788999999999999987 688999999999999987656677788899999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCC--------------CCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEEC
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGS--------------ASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDY  216 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~  216 (229)
                      |....+|++++.|+.|++||+..              ...++.+.+|...+.+++|.+  ++. +|++++.||.|+||++
T Consensus       331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS--SSTTEEEEEETTSEEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC--CCCCEEEEEECCCCEEEeEc
Confidence            96556899999999999999976              245667778988999999954  444 8999999999999998


Q ss_pred             CCC
Q psy4653         217 QNK  219 (229)
Q Consensus       217 ~~~  219 (229)
                      ...
T Consensus       409 ~~~  411 (430)
T 2xyi_A          409 AEN  411 (430)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-33  Score=226.30  Aligned_cols=201  Identities=17%  Similarity=0.280  Sum_probs=179.0

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      |..+|.+++|+|++++|++++.||.|++|| .+++.+..+..+...+.++.|+|++++|++++.|+.|++||+++++.+.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            688999999999999999999999999999 6778888888888999999999999999999999999999997665433


Q ss_pred             --------------------------------------------------------EeccCCCceeEEEEcCCCCEEEEE
Q psy4653          94 --------------------------------------------------------SFEAHSDYVRCVAVHPTQPFLLTS  117 (229)
Q Consensus        94 --------------------------------------------------------~~~~h~~~i~~v~~~~~~~~~~s~  117 (229)
                                                                              .+..|...|.+++|+|++++++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence                                                                    234577789999999999999999


Q ss_pred             eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCC
Q psy4653         118 SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG  197 (229)
Q Consensus       118 ~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~  197 (229)
                      +.|+.|++||++.. .....+.+|...+..+.|+| ++ ++++++.|+.|++||+++++.+..+..|...+.+++|.  +
T Consensus       266 ~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s--~  340 (425)
T 1r5m_A          266 SDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS--Q  340 (425)
T ss_dssp             ETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC--T
T ss_pred             cCCCEEEEEECCCC-ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc--C
Confidence            99999999999875 44556678889999999998 45 99999999999999999999999999999999999995  4


Q ss_pred             CcCEEEEeeCCCeEEEEECCCCe
Q psy4653         198 DKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       198 ~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      ++.+|++++.||.|++||+++++
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHH
T ss_pred             CCCEEEEEECCCeEEEEECCCCc
Confidence            56799999999999999999887

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.4e-33  Score=224.74  Aligned_cols=208  Identities=14%  Similarity=0.181  Sum_probs=180.4

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE--EecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF--EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ....+.+|..+|.+++|+|+++.|++++.||.|++||+++++....+  ..+...+.++.|+|++++|++|+.|+.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            55668899999999999999999999999999999999988755444  4467789999999999999999999999999


Q ss_pred             ECCCcce---E-EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCC-----------------ceeeeeeeeccee
Q psy4653          85 NYNTLER---F-HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK-----------------AWACQQVFEGHTH  143 (229)
Q Consensus        85 d~~~~~~---~-~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~-----------------~~~~~~~~~~~~~  143 (229)
                      |++..+.   . .....|...|.+++|+|++.++++++.|+.|++||++.                 .......+.+|..
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  203 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence            9987652   2 33367889999999999999999999999999999641                 1244566678889


Q ss_pred             eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .+..+.|+| ++.+|++++.|+.|++||+++++++..+..|...+.+++|.+  ++.+|++| .|+.|++||+++
T Consensus       204 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          204 WVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT--ESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE--TTEEEEEE-TTSSCEEEEEET
T ss_pred             eEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec--CCCEEEEE-eCCeEEEEEccC
Confidence            999999998 678999999999999999999999999999999999999976  34467666 999999999987

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.9e-33  Score=254.44  Aligned_cols=215  Identities=21%  Similarity=0.399  Sum_probs=191.5

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      .+.+|.+.|.+++|+|+++++++|+.||.|++||+.+++.+..+..|...|.++.|+|++++|++|+.|+.|++||+.++
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCceeEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      +.+..+.+|...|.+++|+|  ++.++++++.|+.|++||+..+ .+...+.+|...|..+.|+| ++.++++++.|+.|
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTL  767 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEec-CCCEEEEEECCCeE
Confidence            99999999999999999999  4558899999999999999876 45566778999999999998 68899999999999


Q ss_pred             EEEeCCCCCceEEE-------------------------------------------------------ecCCCceEEEE
Q psy4653         168 KVWQLGSASPNFTL-------------------------------------------------------EGHEKGVNCVD  192 (229)
Q Consensus       168 ~~wd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~~~  192 (229)
                      ++||+.++.....+                                                       .+|...+.+++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            99998665332221                                                       15667788888


Q ss_pred             EEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       193 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |.  +++.++++++.|+.|++||+.++..+..+.+|
T Consensus       848 ~s--p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  881 (1249)
T 3sfz_A          848 FS--PYDHLAVIALSQYCVELWNIDSRLKVADCRGH  881 (1249)
T ss_dssp             EC--SSTTEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             Ec--CCCCEEEEEeCCCeEEEEEcCCCceeeecCCC
Confidence            84  45668999999999999999999998888765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=228.84  Aligned_cols=214  Identities=14%  Similarity=0.181  Sum_probs=181.1

Q ss_pred             cccCCCceEEEEEccCCCeE-EEEEecCeEEEEEcC--CCCeEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWM-LASLYNGHVHVWNHE--TNQNVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l-~~~~~dg~v~~wd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      ..+|...|.+++|+|+++.| ++|+.||.|++||+.  +++.+..+.  .+...+.++.|+|++++|++|+.||.+.+|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            45678899999999999997 778899999999999  888888776  4557899999999999999999999999999


Q ss_pred             CCCcceEE----EeccCCCceeEEEEcCC---CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          86 YNTLERFH----SFEAHSDYVRCVAVHPT---QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        86 ~~~~~~~~----~~~~h~~~i~~v~~~~~---~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      +.+++...    .+.+|...|.+++|+|+   ++++++++.|+.|++||++..........+|...|.++.|+  ++.+|
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~~l  255 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDYLL  255 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STTEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCCEE
Confidence            98766443    67889999999999999   89999999999999999987655445467899999999998  68999


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecC-------------------------CCceEEEEEEeCCCcCEEEEee-CCCeEE
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGH-------------------------EKGVNCVDYYHGGDKPYLISGA-DDRLVK  212 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h-------------------------~~~v~~~~~~~~~~~~~l~s~s-~d~~i~  212 (229)
                      ++++.|+.|++||+++++.+..+..+                         ...+.+++|.  +++.+|++++ .|+.|+
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS--KNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC--SSSSEEEEEETTCSEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe--CCCCEEEEEECCCCeEE
Confidence            99999999999999999887777532                         3457788875  4566888888 899999


Q ss_pred             EEEC--CCC---eEEEeeccC
Q psy4653         213 IWDY--QNK---TCVQTLESG  228 (229)
Q Consensus       213 iwd~--~~~---~~~~~~~~~  228 (229)
                      +|++  .++   +.+.++..+
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~  354 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFP  354 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECS
T ss_pred             EEEeccCCCCceeeccEeccC
Confidence            9999  665   677766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4e-33  Score=246.30  Aligned_cols=220  Identities=26%  Similarity=0.434  Sum_probs=195.5

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+.+.+|..+|.+++|+|+++.|++|+.||.|++||+.+++.+..+..|...+.++.|+|++++|++|+.||.|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            44567889999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCc-ceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC-CCCEEEEEEC
Q psy4653          87 NTL-ERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-DNNTFASASL  163 (229)
Q Consensus        87 ~~~-~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~  163 (229)
                      +++ .....+.+|...|.+++|+| ++..+++++.|+.|++||+............+...+..+.|+|. ++.++++++.
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            876 56677888999999999999 78899999999999999997664444443444477899999872 5779999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |+.|++||+.++.++..+.+|...+.+++|.  +++.+|++++.||.|++||+.+++.+.++..+
T Consensus       207 dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            9999999999999999999999999999995  45669999999999999999999988887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-32  Score=223.99  Aligned_cols=210  Identities=16%  Similarity=0.195  Sum_probs=175.1

Q ss_pred             cccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecC---cCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          11 LTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCD---LPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      +.+|...|.+++|+| ++..|++++.|+.|++||+++ +.+..+..+.   ..+.++.|+|++++|++|+.|+.|++||+
T Consensus       114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  192 (383)
T 3ei3_B          114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL  192 (383)
T ss_dssp             CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred             cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence            347999999999999 678999999999999999996 5555554443   67999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCce---eeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAW---ACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                       .++.+..+..|...|.+++|+|+++ ++++++.|+.|++||++...   .+...+ +|...|..+.|+|.++.+|++++
T Consensus       193 -~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          193 -DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             -TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             -CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence             5678888999999999999999999 89999999999999997622   233334 68899999999985688999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCC-------C----------ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHE-------K----------GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~-------~----------~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      .|+.|++||+++......+.+|.       .          .+.+++|.+  ++.+  +|+.|+.|++||+++++++.++
T Consensus       271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~--dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP--DDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC--CTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC--Cccc--ccCCCCeEEEEecCCCceeeee
Confidence            99999999999887777776553       1          233344432  3333  7889999999999999999988


Q ss_pred             cc
Q psy4653         226 ES  227 (229)
Q Consensus       226 ~~  227 (229)
                      ..
T Consensus       347 ~~  348 (383)
T 3ei3_B          347 RD  348 (383)
T ss_dssp             CB
T ss_pred             cC
Confidence            75

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-32  Score=226.29  Aligned_cols=204  Identities=26%  Similarity=0.483  Sum_probs=183.7

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      .+|...|.|++|  +++.+++|+.||.|++||+.+++.+..+..|...|.++.|  ++++|++|+.||.|++||+++++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            356677888877  7889999999999999999999999999999999999998  788999999999999999999999


Q ss_pred             EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      +..+.+|...|.+++|++  .++++++.|+.|++||+......  ...+.+|...|..+.+   ++.++++|+.|+.|++
T Consensus       206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~v  280 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKV  280 (435)
T ss_dssp             EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEE
T ss_pred             EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEE
Confidence            999999999999999975  59999999999999999765432  3667789999999988   4679999999999999


Q ss_pred             EeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ||+++++.+..+.+|...+.++++.    +.++++|+.||.|++||+++++++.++.+|
T Consensus       281 wd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h  335 (435)
T 1p22_A          281 WNTSTCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGH  335 (435)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EECCcCcEEEEEcCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence            9999999999999999999999882    358999999999999999999999998865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=222.22  Aligned_cols=211  Identities=20%  Similarity=0.322  Sum_probs=176.8

Q ss_pred             ccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC---CCEEEEEeCCCeEEEEECC
Q psy4653          12 TARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR---KNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus        12 ~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+|..+|.+++|+| ++..+++++.||.|++||+.+++....+. +...+.++.|.|.   ++++++|+.|+.|.+||++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            46999999999999 77789999999999999999998887776 5668999999984   4599999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeee---------------ecceeeEEEEEEc
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVF---------------EGHTHYVMQIVIN  151 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~---------------~~~~~~v~~~~~~  151 (229)
                      +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||++........+               .+|...|..+.|+
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            9998899999999999999999998 58899999999999997654333333               5688899999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCC-----------------------------------------------ceEEEecC
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSAS-----------------------------------------------PNFTLEGH  184 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------------------------~~~~~~~h  184 (229)
                      | ++.+|++++.|+.|++||+.+++                                               ++..+.+|
T Consensus       255 ~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          255 S-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             C-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence            8 68899999999999999986542                                               34456779


Q ss_pred             CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       185 ~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ...|.+++|.+  ++.+|++|+.||.|++||+++++.+...+
T Consensus       334 ~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          334 YKTVDCCVFQS--NFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             SSCEEEEEEET--TTTEEEEEETTSCEEEEEECC--------
T ss_pred             CCeEEEEEEcC--CCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            89999999964  55689999999999999999988776543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=224.31  Aligned_cols=215  Identities=13%  Similarity=0.207  Sum_probs=175.5

Q ss_pred             hhcccCCCceEEEEEccCCCeEEE-EEe---cCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCC---CCEEEEEeCCCe
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLA-SLY---NGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPR---KNWIVTGSDDMQ   80 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~-~~~---dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~sg~~d~~   80 (229)
                      +.+.+|..+|.+++|+|+++.+++ |+.   ||.|++||+.+++...... .+..+|.++.|+|+   +++|++|+.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            346789999999999999976665 444   8999999999988755433 57789999999998   699999999999


Q ss_pred             EEEEECCCcc-eEEEeccCCCceeEEE------EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeeccee----eEEEEE
Q psy4653          81 VCVFNYNTLE-RFHSFEAHSDYVRCVA------VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH----YVMQIV  149 (229)
Q Consensus        81 i~iwd~~~~~-~~~~~~~h~~~i~~v~------~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~----~v~~~~  149 (229)
                      |++||+++++ .+..+.+|...|.+++      |+|+++++++++.|+.|++||++........+..|.+    .+..+.
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            9999999887 7888999999999995      5788999999999999999999876544555544433    688887


Q ss_pred             ----EcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCC-CcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         150 ----INPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG-DKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       150 ----~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                          |+| ++.++++++.|+.|++||+++.+.. ....|...+.+++|.+.+ ++.+|++|+.||.|++||+++++++..
T Consensus       172 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          172 FGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EECCCC--CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEeccCC-CCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence                555 6889999999999999999887764 346678889999996421 456899999999999999987765444


Q ss_pred             e
Q psy4653         225 L  225 (229)
Q Consensus       225 ~  225 (229)
                      +
T Consensus       250 ~  250 (357)
T 3i2n_A          250 F  250 (357)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=222.50  Aligned_cols=214  Identities=20%  Similarity=0.364  Sum_probs=181.4

Q ss_pred             hhhhcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEE-------------ecCcCeEEEEEcC-CCCE
Q psy4653           7 IKRKLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFE-------------VCDLPVRAAKFVP-RKNW   71 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~   71 (229)
                      ....+.+|..+|.+++|+| ++++|++|+.||.|++||+.+++....+.             .+...|.++.|+| ++++
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3445778999999999999 99999999999999999999987655543             3778899999999 7789


Q ss_pred             EEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCC---EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEE
Q psy4653          72 IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI  148 (229)
Q Consensus        72 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~---~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~  148 (229)
                      |++++.|+.|++||+.+++....+. +...+.++.++|.+.   ++++++.|+.|++||++.. .....+.+|...|.++
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAV  192 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCCSCEEEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCCCcEEEE
Confidence            9999999999999999988877776 778899999998544   8999999999999999876 4456677899999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCCCCC-ceEEE---------------ecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLGSAS-PNFTL---------------EGHEKGVNCVDYYHGGDKPYLISGADDRLVK  212 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~---------------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~  212 (229)
                      .|+|....++++|+.|+.|++||++... +...+               ..|...+.+++|.  +++.+|++++.||.|+
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~  270 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT--SDGLHLLTVGTDNRMR  270 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC--TTSSEEEEEETTSCEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc--CCCCEEEEecCCCeEE
Confidence            9999544479999999999999998764 33333               5688889999995  4667999999999999


Q ss_pred             EEECCCCeEEEe
Q psy4653         213 IWDYQNKTCVQT  224 (229)
Q Consensus       213 iwd~~~~~~~~~  224 (229)
                      +||+++++....
T Consensus       271 vwd~~~~~~~~~  282 (408)
T 4a11_B          271 LWNSSNGENTLV  282 (408)
T ss_dssp             EEETTTCCBCCC
T ss_pred             EEECCCCcccee
Confidence            999998775443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.7e-33  Score=229.77  Aligned_cols=207  Identities=20%  Similarity=0.322  Sum_probs=179.0

Q ss_pred             cccCCCceEEEEEccC-CCeEEEEEecCeEEEEEcCC----------CCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCC
Q psy4653          11 LTARSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHET----------NQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDD   78 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d   78 (229)
                      ..+|..+|++++|+|+ +.++++++.||.|++||+.+          .+.+..+..|...+.++.|+|++. +|++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            4579999999999998 67888889999999999987          566778888888999999999988 99999999


Q ss_pred             CeEEEEECCCcce-------EEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCce--eeeeeeecceeeEEEE
Q psy4653          79 MQVCVFNYNTLER-------FHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAW--ACQQVFEGHTHYVMQI  148 (229)
Q Consensus        79 ~~i~iwd~~~~~~-------~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~  148 (229)
                      |.|++||++.+..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||++...  .....+..|...|.++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999987321       355678999999999999 67789999999999999998653  3455567899999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCCC-CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLGS-ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .|+|....++++|+.|+.|++||++. ..++..+..|...+.+++|.+.+ ..+|++++.|+.|+|||+++
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN-ETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSCCEEEEGGG
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC-CCEEEEEeCCCcEEEEeCCC
Confidence            99996555899999999999999987 56788899999999999996543 24799999999999999987

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-32  Score=234.68  Aligned_cols=217  Identities=14%  Similarity=0.243  Sum_probs=192.8

Q ss_pred             hhhhhcccCCCc-eEEEEEcc--CCCeEEEEEecCeEEEEEcCCC--------CeEEEEEecCcCeEEEEEcCCCCEEEE
Q psy4653           6 DIKRKLTARSDR-VKCCDLHP--TEPWMLASLYNGHVHVWNHETN--------QNVKSFEVCDLPVRAAKFVPRKNWIVT   74 (229)
Q Consensus         6 ~~~~~~~~~~~~-v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s   74 (229)
                      +..+.+.+|... |.+++|+|  ++++|++++.||.|++||+.++        +.+..+..+..++.++.|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            455678899999 99999999  9999999999999999999855        566677778889999999999999999


Q ss_pred             EeCC----CeEEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeeccee---eEE
Q psy4653          75 GSDD----MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTH---YVM  146 (229)
Q Consensus        75 g~~d----~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~---~v~  146 (229)
                      ++.+    +.|.+||  .++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+... .....+.+|..   .|.
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~  210 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVR  210 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEE
Confidence            9988    6888887  5677888899999999999999998 7999999999999999766 45566778888   999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE-e---cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-E---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      ++.|+|.++.++++++.|+.|++||+.+++.+..+ .   .|...+.+++|.   ++.+|++++.|+.|++||+++++++
T Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL---DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES---SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc---CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            99999943889999999999999999999988888 6   899999999995   5668999999999999999999998


Q ss_pred             EeeccC
Q psy4653         223 QTLESG  228 (229)
Q Consensus       223 ~~~~~~  228 (229)
                      .++..+
T Consensus       288 ~~~~~~  293 (615)
T 1pgu_A          288 QKWTLD  293 (615)
T ss_dssp             EEEECC
T ss_pred             EEEcCC
Confidence            887654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-32  Score=216.56  Aligned_cols=218  Identities=12%  Similarity=0.215  Sum_probs=190.8

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC-----Ce
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD-----MQ   80 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----~~   80 (229)
                      +....+.+|..+|.+++|+|+++.|++++.||.|++||+.+++.+..+. +...+.++.|+|++++|++++.+     +.
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred             hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence            3445688999999999999999999999999999999999999988887 67789999999999999999999     99


Q ss_pred             EEEEECCCcc-----------eEEEeccCCC--ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEE
Q psy4653          81 VCVFNYNTLE-----------RFHSFEAHSD--YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ  147 (229)
Q Consensus        81 i~iwd~~~~~-----------~~~~~~~h~~--~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~  147 (229)
                      |.+||++...           .+..+..|..  .+.+++|+|+++++++++.|+.|++||++........+..|...|..
T Consensus       144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred             EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence            9999986542           3344455655  89999999999999999999999999998755667778889999999


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC--------------eEEE
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR--------------LVKI  213 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--------------~i~i  213 (229)
                      +.|+| ++.+|++++.|+.|++||+++.+.+..+. +...+.+++|.  +++.++++++.++              .+++
T Consensus       224 ~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  299 (369)
T 3zwl_B          224 MQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVIT--PLKEFIILGGGQEAKDVTTTSANEGKFEARF  299 (369)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSSSEEEEEECCC-------------CEEEE
T ss_pred             EEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEec--CCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence            99998 68899999999999999999988887777 56778888884  4567899999888              8999


Q ss_pred             EECCCCeEEEeeccC
Q psy4653         214 WDYQNKTCVQTLESG  228 (229)
Q Consensus       214 wd~~~~~~~~~~~~~  228 (229)
                      ||..+++.+..+..|
T Consensus       300 ~d~~~~~~~~~~~~~  314 (369)
T 3zwl_B          300 YHKIFEEEIGRVQGH  314 (369)
T ss_dssp             EETTTCCEEEEEECC
T ss_pred             EecCCCcchhheecc
Confidence            999999999888765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.3e-32  Score=222.39  Aligned_cols=206  Identities=16%  Similarity=0.285  Sum_probs=180.9

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC-Ccce
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN-TLER   91 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~-~~~~   91 (229)
                      .|...|.+++|+|+++.|++|+.||.|++||+.+++.+..+..+...+.++.|  +++.|++|+.||.|++||++ ....
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence            37889999999999999999999999999999999999999989999999999  45799999999999999998 4566


Q ss_pred             EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE--CCCcEEE
Q psy4653          92 FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS--LDRTVKV  169 (229)
Q Consensus        92 ~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~  169 (229)
                      +..+.+|...|.+++|+|++.++++++.|+.|++||++.. .....+.+|...|..+.|+|....++++++  .|+.|++
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence            7888899999999999999999999999999999999875 345556788999999999997677888876  8999999


Q ss_pred             EeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE--eeCCCeEEEEECCCCeEEEe
Q psy4653         170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS--GADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~~~~~  224 (229)
                      ||+.+++++..+. +...+.+++|.+  ++.+|++  |+.||.|++||+++++....
T Consensus       289 ~d~~~~~~~~~~~-~~~~v~~~~~s~--~~~~l~~~~g~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          289 WNAATGARVNTVD-AGSQVTSLIWSP--HSKEIMSTHGFPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECS--SSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred             EECCCCCEEEEEe-CCCcEEEEEECC--CCCeEEEEeecCCCcEEEEecCCccceeE
Confidence            9999998888776 456799999954  5567777  55899999999999766554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.4e-32  Score=224.30  Aligned_cols=212  Identities=14%  Similarity=0.247  Sum_probs=168.2

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL-   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-   89 (229)
                      +.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...+.++.++  ++.|++|+.|+.+.+||.... 
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence            45788899999999999999999999999999999999999999998888888775  679999999999999998764 


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCC-------------
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPK-------------  153 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~-------------  153 (229)
                      ..+..+.+|...+.++.++|++.++++++.|+.+++|+......   .......|...|..+.|+|.             
T Consensus       221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence            45677889999999999999999999999999999999864321   12222333333443333332             


Q ss_pred             ------------------------------CCCEEEEEE--CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCE
Q psy4653         154 ------------------------------DNNTFASAS--LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY  201 (229)
Q Consensus       154 ------------------------------~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  201 (229)
                                                    ++..+++++  .|+.|++||+.+.+++.++.+|...|.+++|+  +++.+
T Consensus       301 ~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s--pdg~~  378 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS--PDGAT  378 (420)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSC
T ss_pred             CEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCE
Confidence                                          234444433  67778888887778888899999999999995  46678


Q ss_pred             EEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         202 LISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       202 l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |+||+.|++|+|||+....+.++.+
T Consensus       379 l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          379 VASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             EEEEETTTEEEEECCSCSSCC----
T ss_pred             EEEEecCCeEEEEECCCCCccchhh
Confidence            9999999999999997765544443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.7e-33  Score=229.54  Aligned_cols=211  Identities=14%  Similarity=0.295  Sum_probs=174.3

Q ss_pred             hhhhcccCC------------CceEEEEEccCC--CeEEEEEecCeEEEEEcCCCCeE----------------------
Q psy4653           7 IKRKLTARS------------DRVKCCDLHPTE--PWMLASLYNGHVHVWNHETNQNV----------------------   50 (229)
Q Consensus         7 ~~~~~~~~~------------~~v~~~~~~p~~--~~l~~~~~dg~v~~wd~~~~~~~----------------------   50 (229)
                      +...+.+|.            .+|.+++|+|++  ..|++++.|+.|++||+.+++..                      
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            456688998            889999999998  78999999999999999874432                      


Q ss_pred             -----------------EE-EEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEE-------EeccCCCceeE
Q psy4653          51 -----------------KS-FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFH-------SFEAHSDYVRC  104 (229)
Q Consensus        51 -----------------~~-~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~-------~~~~h~~~i~~  104 (229)
                                       .. ...|...|.++.|+|++++|++| .|+.|++||++. .+.+.       .+..|...|.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  231 (447)
T 3dw8_B          153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA  231 (447)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred             EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence                             12 23577889999999999999999 799999999984 33443       35689999999


Q ss_pred             EEEcCCC-CEEEEEeCCCcEEEEecCCceee---eeeeeccee------------eEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653         105 VAVHPTQ-PFLLTSSDDMLIKLWNWEKAWAC---QQVFEGHTH------------YVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus       105 v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~---~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ++|+|++ .++++++.|+.|++||++.....   ...+.+|..            .|..+.|+| ++.+|++++. +.|+
T Consensus       232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~  309 (447)
T 3dw8_B          232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVK  309 (447)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEE
T ss_pred             EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEE
Confidence            9999998 89999999999999999876431   456677765            899999998 7889999998 9999


Q ss_pred             EEeCCC-CCceEEEecCCCc---------------eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         169 VWQLGS-ASPNFTLEGHEKG---------------VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       169 ~wd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      +||++. ++++..+.+|...               +..++|  ++++.+|++|+.||.|++||+++++.+
T Consensus       310 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          310 VWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW--NGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE--CTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             EEeCCCCccccceeeccccccccccccccccccccceEEEE--CCCCCEEEEeccCCEEEEEEcCCCcce
Confidence            999987 7888888888532               223777  456678999999999999999998875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-32  Score=227.26  Aligned_cols=206  Identities=10%  Similarity=0.131  Sum_probs=176.5

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCC---eEEEEEecC-----------------------------------
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ---NVKSFEVCD-----------------------------------   57 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~-----------------------------------   57 (229)
                      .++.+++|+|+|++|+ ++.++.|++||+.+++   .+..+..+.                                   
T Consensus         5 ~p~~~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            4789999999999544 5568999999999998   555554221                                   


Q ss_pred             -------------------cCeEEEEEcCCCCEE-EEEeCCCeEEEEECC--CcceEEEec--cCCCceeEEEEcCCCCE
Q psy4653          58 -------------------LPVRAAKFVPRKNWI-VTGSDDMQVCVFNYN--TLERFHSFE--AHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        58 -------------------~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~--~~~~~~~~~--~h~~~i~~v~~~~~~~~  113 (229)
                                         ..|.++.|+|++++| ++|+.||.|++||+.  +++.+..+.  .|...|.+++|+|++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                               159999999999996 999999999999998  787777776  56788999999999999


Q ss_pred             EEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCCC---CCEEEEEECCCcEEEEeCCCCCceEE-EecCCC
Q psy4653         114 LLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKD---NNTFASASLDRTVKVWQLGSASPNFT-LEGHEK  186 (229)
Q Consensus       114 ~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~h~~  186 (229)
                      +++++.|+.|++|++.....   ....+.+|...|.++.|+| +   +.+|++|+.|+.|++||++++..+.. +.+|..
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999876533   2235678999999999998 5   77999999999999999998888777 568999


Q ss_pred             ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       187 ~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .|.+++|.   ++.+|++|+.|+.|++||+++++++.++.
T Consensus       243 ~v~~~~~s---d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          243 FVSSICCG---KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             CEEEEEEC---STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEEC---CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            99999995   56699999999999999999999988876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-33  Score=230.23  Aligned_cols=212  Identities=12%  Similarity=0.197  Sum_probs=176.7

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcC---CCCeEEEEEe------------cCcCeEEEE--EcCCCCEEEEE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHE---TNQNVKSFEV------------CDLPVRAAK--FVPRKNWIVTG   75 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~sg   75 (229)
                      +|..+|.+++|+|+++.|++++.||.|++||++   +++....+..            +...+.++.  +++++++|++|
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            699999999999999999999999999999995   6665554432            233456665  55789999999


Q ss_pred             eCCCeEEEEECCCcceEEEecc--CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee-cceeeEEEEEEcC
Q psy4653          76 SDDMQVCVFNYNTLERFHSFEA--HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-GHTHYVMQIVINP  152 (229)
Q Consensus        76 ~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~  152 (229)
                      +.|+.|++||+++++.+..+..  |...|.+++|+|++.++++++.|+.|++||++.... ...+. +|..+|..+.++|
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECT
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEecc
Confidence            9999999999999999998887  889999999999999999999999999999987643 44443 7778999998776


Q ss_pred             C---CCCEEEEEECCCcEEEEeCCCCCceEEEecC--------------------------CCceEEEEEEeCCCcCEEE
Q psy4653         153 K---DNNTFASASLDRTVKVWQLGSASPNFTLEGH--------------------------EKGVNCVDYYHGGDKPYLI  203 (229)
Q Consensus       153 ~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--------------------------~~~v~~~~~~~~~~~~~l~  203 (229)
                      .   ++.+|++|+.|+.|++||+++++.+..+.+|                          ...|.+++|.   ++.+|+
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~---~~~~l~  344 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS---NDKILL  344 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE---TTEEEE
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC---CceEEE
Confidence            2   5669999999999999999988877766644                          4457778885   336899


Q ss_pred             EeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         204 SGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       204 s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +|+.|+.|++||+++++++.++..+
T Consensus       345 s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          345 TDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             EEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             ecCCCCeEEEEECCCcccceEEecc
Confidence            9999999999999999888777653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4e-32  Score=225.23  Aligned_cols=209  Identities=25%  Similarity=0.451  Sum_probs=186.2

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+.+.+|.+.|.. +++++++.+++|+.||.|++||+.+++.+..+..|...|.++.|+  ++.|++|+.||.|++||+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence            34568899998744 366678999999999999999999999999999999999999998  679999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ++++.+..+.+|...|.++.|+  +..+++++.|+.|++||+... .....+.+|...+.++.+   ++.++++|+.|+.
T Consensus       187 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~  260 (445)
T 2ovr_B          187 ETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFM  260 (445)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-CEEEEEECCSSCEEEEEE---CSSCEEEEETTSC
T ss_pred             CcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-cEEEEEcCCcccEEEEEE---CCCEEEEEcCCCE
Confidence            9999999999999999999996  468999999999999999876 445667789999999988   4678999999999


Q ss_pred             EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |++||+++++++..+.+|...+.+++|    ++.++++|+.|+.|++||+++++++.++..+
T Consensus       261 i~iwd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          261 VKVWDPETETCLHTLQGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  318 (445)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE----CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEECCCCcEeEEecCCCCceEEEEE----CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence            999999999999999999999999998    4568999999999999999999999888765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=220.17  Aligned_cols=204  Identities=19%  Similarity=0.267  Sum_probs=173.8

Q ss_pred             ccCCCceEEEEEccC---CCeEEEEEecCeEEEEEcCCCC-eEEEEEecCcCeEEEEE------cCCCCEEEEEeCCCeE
Q psy4653          12 TARSDRVKCCDLHPT---EPWMLASLYNGHVHVWNHETNQ-NVKSFEVCDLPVRAAKF------VPRKNWIVTGSDDMQV   81 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~---~~~l~~~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~d~~i   81 (229)
                      .+|..+|.+++|+|+   +..|++|+.||.|++||+.+++ .+..+..|...+.++.|      +|++++|++|+.|+.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            378999999999999   6999999999999999999988 78888889999999955      6789999999999999


Q ss_pred             EEEECCCcc-eEEEeccCCC----ceeEEE----EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcC
Q psy4653          82 CVFNYNTLE-RFHSFEAHSD----YVRCVA----VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP  152 (229)
Q Consensus        82 ~iwd~~~~~-~~~~~~~h~~----~i~~v~----~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~  152 (229)
                      ++||+++++ .+..+..|..    .+.+++    |+|++.++++++.|+.|++||++....  .....|...+..+.|+|
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESC
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCC
Confidence            999998876 6677766554    788888    789999999999999999999987643  23356788899999998


Q ss_pred             C--CCCEEEEEECCCcEEEEeCCCCCceEEEe-----cCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCC
Q psy4653         153 K--DNNTFASASLDRTVKVWQLGSASPNFTLE-----GHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       153 ~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~  219 (229)
                      .  ++.++++++.|+.|++||+++..+...+.     +|...+.+++|.+  ++. +|++|+.||.|++||++++
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP--QNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET--TEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC--CCCcEEEEEeCCCcEEEeecCCC
Confidence            4  57899999999999999998776555444     8999999999964  445 8999999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=236.74  Aligned_cols=211  Identities=8%  Similarity=0.020  Sum_probs=168.6

Q ss_pred             CCCceEEEEEccCC---------CeEEEE-------------------EecCeEEEEEcCCCCeE----EEEEecCcCeE
Q psy4653          14 RSDRVKCCDLHPTE---------PWMLAS-------------------LYNGHVHVWNHETNQNV----KSFEVCDLPVR   61 (229)
Q Consensus        14 ~~~~v~~~~~~p~~---------~~l~~~-------------------~~dg~v~~wd~~~~~~~----~~~~~~~~~v~   61 (229)
                      +...|.+++|+|++         ++||+|                   +.|++|+|||+.+++..    ..+..+...|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46688899999886         566664                   46789999999887652    23455667899


Q ss_pred             EEEEcCC------CCEEEEEeCCCeEEEEECCCcce-----------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEE
Q psy4653          62 AAKFVPR------KNWIVTGSDDMQVCVFNYNTLER-----------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK  124 (229)
Q Consensus        62 ~~~~~~~------~~~l~sg~~d~~i~iwd~~~~~~-----------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~  124 (229)
                      ++.|+|+      +++||+|+.||.|++||+..++.           ...+.+|...|.+++|+++ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996      57999999999999999976531           2367789999999999986 4899999999999


Q ss_pred             EEecCCceeeeeeeecceeeEEEE--EEcCCCC-CEEEEEECCCcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCc
Q psy4653         125 LWNWEKAWACQQVFEGHTHYVMQI--VINPKDN-NTFASASLDRTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDK  199 (229)
Q Consensus       125 lwd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~  199 (229)
                      +||++....+...+.+|..+|.++  .++| ++ .+|+||+.|++|++||+++.++...+.+|..  .+.+++|++  ++
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp--~~  367 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP--QI  367 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET--TT
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC--Cc
Confidence            999986644556678999999999  3454 55 7999999999999999998877777777754  478899964  45


Q ss_pred             CEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         200 PYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       200 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ..+++++.|++|++||++++.++.++..|
T Consensus       368 ~~l~s~~~d~tv~lwd~~~~~~~~~l~gH  396 (524)
T 2j04_B          368 YSYIYSDGASSLRAVPSRAAFAVHPLVSR  396 (524)
T ss_dssp             TEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred             CeEEEeCCCCcEEEEECcccccceeeecC
Confidence            57999999999999999999887777654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.6e-32  Score=224.43  Aligned_cols=209  Identities=25%  Similarity=0.451  Sum_probs=184.8

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +....+.+|..+|.+++|  ++..+++|+.||.|++||+.+++.+..+..+...+.++.|+  ++.|++|+.||.|++||
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEe
Confidence            345568899999999999  78899999999999999999999999999899999999997  46999999999999999


Q ss_pred             CCCcceE---EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          86 YNTLERF---HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        86 ~~~~~~~---~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      +++++..   ..+.+|...|.+++|  ++.++++++.|+.|++||++.. .....+.+|...+.++.++   +.++++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~~g~  313 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR---DRLVVSGS  313 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE---TTEEEEEE
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEeC---CCEEEEEe
Confidence            9877654   667889999999999  6789999999999999999876 4566678899999999884   57999999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe---------EEEeeccC
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT---------CVQTLESG  228 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---------~~~~~~~~  228 (229)
                      .|+.|++||+++++++..+.+|...+.+++|    ++.+|++|+.||.|++||+++++         ++.++..|
T Consensus       314 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h  384 (435)
T 1p22_A          314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH  384 (435)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred             CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe----cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence            9999999999999999999999999999998    45589999999999999997765         77777654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.2e-32  Score=215.55  Aligned_cols=196  Identities=13%  Similarity=0.121  Sum_probs=153.2

Q ss_pred             CceEEEEEccC----CCeEEEEEe--------------------cCeEEEEEc-CCCCeEEEEEecCcCeEEEEEcC---
Q psy4653          16 DRVKCCDLHPT----EPWMLASLY--------------------NGHVHVWNH-ETNQNVKSFEVCDLPVRAAKFVP---   67 (229)
Q Consensus        16 ~~v~~~~~~p~----~~~l~~~~~--------------------dg~v~~wd~-~~~~~~~~~~~~~~~v~~~~~~~---   67 (229)
                      ..|.+++|+|+    ++.+++++.                    |+.|++|++ .+++.+..+..+...+..+.|++   
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence            36778888888    888887664                    889999999 44788888888888888999998   


Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEeccCC---CceeEEEEcCCCCEE------------EEEeCCCcEEEEecCCce
Q psy4653          68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS---DYVRCVAVHPTQPFL------------LTSSDDMLIKLWNWEKAW  132 (229)
Q Consensus        68 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~---~~i~~v~~~~~~~~~------------~s~~~d~~v~lwd~~~~~  132 (229)
                      ++.+|++|+.|+.|+|||+++++.++.+.+|.   ..+.+++|+|++.++            ++|+.|++|++||..++.
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            67899999999999999999999999998654   467788999999876            568899999999998764


Q ss_pred             eeeeee-----ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceE-EEEEEeCCCcCEEEEee
Q psy4653         133 ACQQVF-----EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVN-CVDYYHGGDKPYLISGA  206 (229)
Q Consensus       133 ~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s  206 (229)
                      .. .++     .+|...+....++   +.++++|+.|++|++||+.+++.+.++.+|...+. +++|+  +++++|+||+
T Consensus       272 ~l-~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS--PDG~~LaSGS  345 (356)
T 2w18_A          272 SV-GVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS--GTDSHLLAGQ  345 (356)
T ss_dssp             EE-EEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC--SSSSEEEEEC
T ss_pred             EE-EEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC--CCCCEEEEEE
Confidence            33 222     3665554444332   56899999999999999999999999999987665 58884  5677999999


Q ss_pred             CCCeEEEEECC
Q psy4653         207 DDRLVKIWDYQ  217 (229)
Q Consensus       207 ~d~~i~iwd~~  217 (229)
                      .|++|+|||+.
T Consensus       346 ~D~TIklWd~~  356 (356)
T 2w18_A          346 KDGNIFVYHYS  356 (356)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCcEEEecCC
Confidence            99999999963

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-31  Score=210.25  Aligned_cols=209  Identities=21%  Similarity=0.265  Sum_probs=182.0

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC---CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN---QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ...+.+|..+|.+++|+|+++.+++++.||.|++|++...   +.+..+..+...+.++.|  ++++|++|+.|+.|++|
T Consensus        52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~  129 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW  129 (313)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence            4456789999999999999999999999999999998764   556677778889999999  57899999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      |  ..+....+..|...+.++.|+| ++.++++++.|+.|++||..   .....+.. |...+..+.++| ++. +++++
T Consensus       130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~  202 (313)
T 3odt_A          130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVD-DGH-FISCS  202 (313)
T ss_dssp             E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEE-TTE-EEEEE
T ss_pred             c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcC-CCe-EEEcc
Confidence            9  5677788889999999999988 88999999999999999943   23444555 888899999998 444 99999


Q ss_pred             CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         163 LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .|+.|++||+++++++..+.+|...+.+++|.+  ++ .|++++.||.|++||+++++++.++..+
T Consensus       203 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          203 NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP--NG-DIVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECT--TS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             CCCeEEEEECCchhhhhhhhcCCceEEEEEEec--CC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence            999999999999999999999999999999954  43 5899999999999999999998888765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.4e-32  Score=231.63  Aligned_cols=209  Identities=14%  Similarity=0.158  Sum_probs=187.4

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC----CeEEEEEecCcC-eEEEEEcC--CCCEEEEEeCCCeEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN----QNVKSFEVCDLP-VRAAKFVP--RKNWIVTGSDDMQVCV   83 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~sg~~d~~i~i   83 (229)
                      -..|...|.+++|+|++++|++++ ++.|.+||+.++    +....+..|... |.++.|+|  ++++|++|+.||.|++
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            346889999999999999999988 899999999998    888899889999 99999999  9999999999999999


Q ss_pred             EECCCc--------ceEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653          84 FNYNTL--------ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        84 wd~~~~--------~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                      ||+.++        +.+..+..|...|.+++|+|+++++++++.+    +.|++||..   .....+.+|...|..+.|+
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~~~~  169 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLK  169 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEEC
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEEEEEC
Confidence            999754        5667788899999999999999999999988    789999843   3456678899999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCC---ceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK---GVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~---~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      |....++++++.|+.|++||+.+.+.+..+.+|..   .+.+++|.+  + +.+|++++.|+.|++||+++++.+..+
T Consensus       170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            95444899999999999999999988999999998   899999954  4 668999999999999999999999888

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.9e-31  Score=209.43  Aligned_cols=215  Identities=25%  Similarity=0.466  Sum_probs=186.5

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+.+.+|...|.+++|+|++++|++++.|+.|++|+............+...+....+.+.+++|++|+.|+.+++||.
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            34568899999999999999999999999999999999999888888778888999999999999999999999999998


Q ss_pred             CCcce-EEEeccCCCceeEEEEcCCC--CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          87 NTLER-FHSFEAHSDYVRCVAVHPTQ--PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        87 ~~~~~-~~~~~~h~~~i~~v~~~~~~--~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      ..... .....+|...+.+++|++++  .++++++.|+.|++||++.. .....+.+|..+|.++.|+| ++.+|++|+.
T Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~  235 (340)
T 4aow_A          158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSP-DGSLCASGGK  235 (340)
T ss_dssp             TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred             CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECC-CCCEEEEEeC
Confidence            76543 44567889999999999865  46889999999999999876 45666788999999999998 6889999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      |+.|++||+++.+++..+..+ ..+.++.|.+  ++ .+++++.|+.|++||++++.++.++..
T Consensus       236 Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~  295 (340)
T 4aow_A          236 DGQAMLWDLNEGKHLYTLDGG-DIINALCFSP--NR-YWLCAATGPSIKIWDLEGKIIVDELKQ  295 (340)
T ss_dssp             TCEEEEEETTTTEEEEEEECS-SCEEEEEECS--SS-SEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred             CCeEEEEEeccCceeeeecCC-ceEEeeecCC--CC-ceeeccCCCEEEEEECCCCeEEEeccc
Confidence            999999999999888888765 4688888853  33 477788899999999999988877653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.2e-31  Score=219.11  Aligned_cols=208  Identities=26%  Similarity=0.491  Sum_probs=187.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +..+.+.+|...|.+++|+  ++.+++|+.||.|++||+.+++.+..+..|...|.++.|+  ++.|++|+.||.|++||
T Consensus       150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEE
Confidence            3455688999999999998  5689999999999999999999999999899999999996  57899999999999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      +++++.+..+.+|...|.++.|  ++.++++++.|+.|++||++.. .....+.+|...+.++.+   ++.++++|+.|+
T Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~  299 (445)
T 2ovr_B          226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDT  299 (445)
T ss_dssp             SSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE---CSSEEEEEETTS
T ss_pred             CCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE---CCCEEEEEeCCC
Confidence            9999999999999999999999  6789999999999999999876 455667789999999998   467999999999


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .|++||+++++++..+.+|...+.++.+.    +.+|++|+.||.|++||+++++++.++..
T Consensus       300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          300 SIRVWDVETGNCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             CEEEEETTTCCEEEEECCCCSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             eEEEEECCCCCEEEEEcCCcccEEEEEEe----CCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence            99999999999999999999989888872    34899999999999999999999988875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.9e-31  Score=206.93  Aligned_cols=205  Identities=14%  Similarity=0.252  Sum_probs=168.2

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL-   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-   89 (229)
                      +.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...+.++.  ++++.|++|+.++.+.+|+.... 
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCc
Confidence            457888999999999999999999999999999999999999988887776654  45689999999999999998765 


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee---eeeee---------------------------
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC---QQVFE---------------------------  139 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~---~~~~~---------------------------  139 (229)
                      ..+..+.+|...+.++.+++++.++++++.|+.|++||++.....   .....                           
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            456778899999999999999999999999999999998643210   00001                           


Q ss_pred             -----------------cceeeEEEEEEcCCCCCEEEEE--ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC
Q psy4653         140 -----------------GHTHYVMQIVINPKDNNTFASA--SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP  200 (229)
Q Consensus       140 -----------------~~~~~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  200 (229)
                                       .+...+..+.+.|. +..++++  +.|+.|++||+++++++.++.+|...|.+++|.  +++.
T Consensus       221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s--pdg~  297 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS--PDGA  297 (318)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEEETT-TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSS
T ss_pred             CEEEEEecccccccccccceeeeeeeeeccc-ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCC
Confidence                             11223455566663 4555544  489999999999999999999999999999995  4667


Q ss_pred             EEEEeeCCCeEEEEECCCCe
Q psy4653         201 YLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +|+||+.||+|+|||+....
T Consensus       298 ~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          298 TVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CEEEEETTTEEEEECCSCCC
T ss_pred             EEEEEecCCeEEEEECCCCC
Confidence            89999999999999997653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.1e-32  Score=225.58  Aligned_cols=213  Identities=16%  Similarity=0.200  Sum_probs=168.7

Q ss_pred             hcccCCCceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          10 KLTARSDRVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      .+.+|..+|.+++|+| ++..|++++.||+|++||++++........+  ...+.++.|+|++++|++|+.||.|++||+
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~  238 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM  238 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence            4678999999999998 5789999999999999999876543333222  345789999999999999999999999998


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      +. +.+..+.+|...|.+++|+|++. ++++++.|+.|++||++.....  .....+|...|.++.|+| ++.+|++++.
T Consensus       239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~  316 (435)
T 4e54_B          239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQ  316 (435)
T ss_dssp             SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEES
T ss_pred             Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcC
Confidence            64 56678889999999999999887 6789999999999999765332  223357889999999998 7899999999


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCc------eEEEEEEeCCCcCEEEEee------------CCCeEEEEECCCCeEEEee
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKG------VNCVDYYHGGDKPYLISGA------------DDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~  225 (229)
                      |+.|++||+.++.....+..|...      +....|  .++..++++++            .++.|++||..+++++.++
T Consensus       317 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          317 KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW--HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE--CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             CCEEEEEECCCCccceEEecccccccccceeEEEEE--cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            999999999988877777665421      112233  22333344332            4568999999999998876


Q ss_pred             c
Q psy4653         226 E  226 (229)
Q Consensus       226 ~  226 (229)
                      .
T Consensus       395 ~  395 (435)
T 4e54_B          395 Y  395 (435)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.4e-31  Score=214.05  Aligned_cols=203  Identities=13%  Similarity=0.154  Sum_probs=163.2

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT   88 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~   88 (229)
                      .+.+|..+|.+++|+|++++|++|+.+ .+++||+.+++......  ...+..+.+.++++.+ ++|+.|+.|++||..+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            457899999999999999988888765 57899999876654433  2357888899988876 6788889999999999


Q ss_pred             cceEEEeccCCCceeEEEEcCCC-----------------------------------CEEEE--EeCCCcEEEEecCCc
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQ-----------------------------------PFLLT--SSDDMLIKLWNWEKA  131 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~-----------------------------------~~~~s--~~~d~~v~lwd~~~~  131 (229)
                      ++.+..+. +...|.+++|+++.                                   .+++.  |+.||.|++||+...
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred             CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence            98888776 66688888888752                                   23333  578899999998764


Q ss_pred             e--------------e-eeeeeecceeeEEEEEEcCCCCCEEEEEECCCc-EEEEeCCCCCceEEEe-c-CCCceEEEEE
Q psy4653         132 W--------------A-CQQVFEGHTHYVMQIVINPKDNNTFASASLDRT-VKVWQLGSASPNFTLE-G-HEKGVNCVDY  193 (229)
Q Consensus       132 ~--------------~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~-~-h~~~v~~~~~  193 (229)
                      .              . ....+.+|...|.++.|+| ++.+|++|+.|++ |++||+++++++..+. + |...|.+++|
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~  248 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW  248 (355)
T ss_dssp             -----------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred             CccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence            3              0 1566789999999999999 7899999999998 9999999999999998 5 9999999999


Q ss_pred             EeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         194 YHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       194 ~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .  +++.+|++++.|++|++||++.+
T Consensus       249 s--~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          249 S--TDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             C--TTSCEEEEEETTCEEEEEESSCC
T ss_pred             C--CCCCEEEEEECCCEEEEEEccCC
Confidence            5  46679999999999999999765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.6e-31  Score=212.84  Aligned_cols=165  Identities=8%  Similarity=0.070  Sum_probs=134.8

Q ss_pred             CeEEEEEcCCCCEEEEE--eCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-ee
Q psy4653          59 PVRAAKFVPRKNWIVTG--SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-CQ  135 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg--~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-~~  135 (229)
                      .+.+++|+|+|++|+++  +.|+.|+|||+++++.+..++ |...|.+++|+|+++++++++.++ +.+|+...+.. ..
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIAR  212 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceee
Confidence            36789999999987654  478999999999999888876 778899999999999999998665 55555544433 34


Q ss_pred             eeeecceeeEEEEEEcCCCCCEEEEEECCC----cEEEEeCCCCCc----eEEEecCCCceEEEEEEeCCCcCEEEEeeC
Q psy4653         136 QVFEGHTHYVMQIVINPKDNNTFASASLDR----TVKVWQLGSASP----NFTLEGHEKGVNCVDYYHGGDKPYLISGAD  207 (229)
Q Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~  207 (229)
                      ....+|...+..+.|+| ++.++++++.|+    .+++|++.....    ...+.+|...|.+++|+  +++++|++|+.
T Consensus       213 ~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S--pdg~~lasgs~  289 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD--MKGELAVLASN  289 (365)
T ss_dssp             ECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC--TTSCEEEEEET
T ss_pred             eecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC--CCCCceEEEcC
Confidence            45567888999999998 688999999887    688898866532    34677899999999994  56779999999


Q ss_pred             CCeEEEEECCCCeEEEee-ccC
Q psy4653         208 DRLVKIWDYQNKTCVQTL-ESG  228 (229)
Q Consensus       208 d~~i~iwd~~~~~~~~~~-~~~  228 (229)
                      |++|+|||++++++++++ ++|
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSS
T ss_pred             CCEEEEEECCCCcEEEEecCcc
Confidence            999999999999999885 555

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-32  Score=237.33  Aligned_cols=212  Identities=20%  Similarity=0.328  Sum_probs=181.4

Q ss_pred             hhhhhcccCCCceEEEEEccC--CCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCC--CCEEEEEeCCC
Q psy4653           6 DIKRKLTARSDRVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPR--KNWIVTGSDDM   79 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~d~   79 (229)
                      +....+.+|..+|.+++|+|+  ++.+++|+.||.|++||+.+++  .+..+..+...|.++.|+|+  ++.+++|+.||
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            345568899999999999998  9999999999999999999987  56677778889999999999  99999999999


Q ss_pred             eEEEEECCCcc--eEEEeccCCCceeEEEEcC-------------CCCEEEEEeCCCcEEEEecCCce---eeeeeeecc
Q psy4653          80 QVCVFNYNTLE--RFHSFEAHSDYVRCVAVHP-------------TQPFLLTSSDDMLIKLWNWEKAW---ACQQVFEGH  141 (229)
Q Consensus        80 ~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~-------------~~~~~~s~~~d~~v~lwd~~~~~---~~~~~~~~~  141 (229)
                      .|++||+.+..  ....+.+|...|.+++|+|             ++.++++++.||.|++||++...   .+...+.+|
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            99999998763  3455678999999999999             58899999999999999987643   345567789


Q ss_pred             eeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCCC-----ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653         142 THYVMQIVINPKD--NNTFASASLDRTVKVWQLGSAS-----PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIW  214 (229)
Q Consensus       142 ~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iw  214 (229)
                      ..+|.++.|+|..  +.++++|+.|+.|++||+..+.     .......|...+.+++|.  +++.+|++|+.||.|++|
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS--LSGNVLALSGGDNKVTLW  281 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC--TTTCCEEEECSSSCEECC
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc--CCCCEEEEEcCCCEEEEE
Confidence            9999999999943  7899999999999999998763     233345577889999995  456689999999999999


Q ss_pred             ECCCC
Q psy4653         215 DYQNK  219 (229)
Q Consensus       215 d~~~~  219 (229)
                      |++++
T Consensus       282 d~~~~  286 (753)
T 3jro_A          282 KENLE  286 (753)
T ss_dssp             BCCSS
T ss_pred             ecCCC
Confidence            99853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-30  Score=212.31  Aligned_cols=205  Identities=18%  Similarity=0.338  Sum_probs=175.7

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ++.|+|++++ .|++ +.|++|+|||+.+++....+..  +...|.+++|+|+|++|++|+.||.|++||+++++.+..+
T Consensus       108 ~~~l~wS~~n-~lAv-gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            4679999764 5554 4599999999999998887764  4567999999999999999999999999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                      .+|...+.++.++  +.++++++.|+.+++||..........+.+|...+..+.++| ++.++++++.|+.+++|+...+
T Consensus       186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCC
T ss_pred             eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccc
Confidence            9999999998875  479999999999999999877666777889999999999998 6889999999999999999765


Q ss_pred             C----ceEEEecCCCceEEEEEEeCCCcCEEEE--eeCCCeEEEEECCCCeEEEeeccC
Q psy4653         176 S----PNFTLEGHEKGVNCVDYYHGGDKPYLIS--GADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       176 ~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +    .+.....|...|.+++|.+.. ..++++  |+.|++|++||+++++++..+..+
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~  320 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH  320 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTTEEEEEEECS
T ss_pred             cccceeeeeecccCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCccccceeeccc
Confidence            4    355677888999999997543 346655  568999999999999998887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-32  Score=216.48  Aligned_cols=197  Identities=12%  Similarity=0.111  Sum_probs=162.2

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC---------Ccce
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN---------TLER   91 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~---------~~~~   91 (229)
                      ..+.+++..+++|+.||.|++||+.+++.+..+.  ...+.++.|+|.   +++|+.|+.|++|+.+         +++.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            3455788899999999999999999999888776  356788888887   9999999999999765         4443


Q ss_pred             EEEec-cCCCceeEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          92 FHSFE-AHSDYVRCVAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        92 ~~~~~-~h~~~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      +..+. .|.+.|.+++|+|  ++.++++++.|++|++||++...........+...+.++.|+| ++.+|++|+.|+.|+
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~  195 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEE
Confidence            44443 5678899999999  9999999999999999999877543222234555799999998 789999999999999


Q ss_pred             EEeCCCCCce-EEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         169 VWQLGSASPN-FTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       169 ~wd~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +||+++++.. ..+.. |...|.+++|.  +++.+|++++. +.|++||+++++++.+++
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs--~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFA--DNGYWMVVECD-QTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEEC--TTSSEEEEEES-SBEEEEETTSSTTCBSSC
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEe--CCCCEEEEEeC-CeEEEEEcCCCCcceeec
Confidence            9999998877 77887 99999999995  46678999995 599999999987765544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-30  Score=239.99  Aligned_cols=209  Identities=20%  Similarity=0.383  Sum_probs=186.6

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP--RKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~d~~i~iw   84 (229)
                      ....+.+|...|.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.++.|+|  ++.++++|+.|+.|++|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            3456789999999999999999999999999999999999999999999999999999999  45689999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee----------------------------
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ----------------------------  136 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~----------------------------  136 (229)
                      |+++++.+..+.+|.+.|.+++|+|+++++++++.|+.|++||+........                            
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            9999999999999999999999999999999999999999999865422111                            


Q ss_pred             --------------------------eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEE
Q psy4653         137 --------------------------VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC  190 (229)
Q Consensus       137 --------------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~  190 (229)
                                                ...+|...+..+.|+| ++.++++++.|+.|++||+.++..+..+.+|...|.+
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~  887 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG  887 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence                                      1125667788899998 6889999999999999999999999999999999999


Q ss_pred             EEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         191 VDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       191 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ++|.  +++.+|++++.||.|++||+.+
T Consensus       888 v~~s--pdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          888 VMFS--PDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEC--TTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEEC--CCCCEEEEEeCCCeEEEEEccc
Confidence            9995  4667899999999999999753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.4e-30  Score=201.63  Aligned_cols=205  Identities=19%  Similarity=0.283  Sum_probs=164.8

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      +++++|||++ . +|++.|++|+|||+++++.+..+..  |...|.++.|+|++++|++|+.||.|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~-lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-V-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-E-EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-E-EEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4789999886 4 4555699999999999999887764  4567999999999999999999999999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                      .+|...+.++.+  ++..+++++.++.+++|+..........+.+|...+..+.+.+ ++.++++++.|+.|++||++++
T Consensus       106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCB
T ss_pred             cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCC
Confidence            999988877655  4578999999999999999877677777889999999999987 6789999999999999998764


Q ss_pred             Cc----eEEEecC--------------------------------------------CCceEEEEEEeCCCcCEEEE--e
Q psy4653         176 SP----NFTLEGH--------------------------------------------EKGVNCVDYYHGGDKPYLIS--G  205 (229)
Q Consensus       176 ~~----~~~~~~h--------------------------------------------~~~v~~~~~~~~~~~~~l~s--~  205 (229)
                      +.    ......|                                            ...+..+.|.+.  ...+++  |
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~sg  260 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH--YKELISGHG  260 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT--TTEEEEEEC
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc--ccceEEEEE
Confidence            31    1111112                                            222344444332  233443  4


Q ss_pred             eCCCeEEEEECCCCeEEEeeccCC
Q psy4653         206 ADDRLVKIWDYQNKTCVQTLESGI  229 (229)
Q Consensus       206 s~d~~i~iwd~~~~~~~~~~~~~~  229 (229)
                      +.|+.|++||+++++++.++++|.
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCS
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCC
Confidence            589999999999999999998763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.9e-31  Score=215.98  Aligned_cols=201  Identities=22%  Similarity=0.294  Sum_probs=171.6

Q ss_pred             ceEEEEEccCCCeEEE-EEecCeEEEEEcCCC----CeEEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCc-
Q psy4653          17 RVKCCDLHPTEPWMLA-SLYNGHVHVWNHETN----QNVKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYNTL-   89 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~-   89 (229)
                      ....++++|+...+++ ++.||.|++||+.+.    +....+..|...|.++.|+| ++++|++|+.||.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            4556889998876665 678999999999664    23445667888999999999 8999999999999999999887 


Q ss_pred             ------ceEEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEE
Q psy4653          90 ------ERFHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        90 ------~~~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                            +.+..+.+|...|.+++|+|++ .++++++.|+.|++||++.... ...+  .+|...|.++.|+| ++.+|++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~  193 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSR-DGALICT  193 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECC-CCCEEEE
Confidence                  5677888999999999999998 6999999999999999987743 4455  67999999999998 7889999


Q ss_pred             EECCCcEEEEeCCCCCceEEE-ecCCCc-eEEEEEEeCCCcCEEEEe---eCCCeEEEEECCCCeE
Q psy4653         161 ASLDRTVKVWQLGSASPNFTL-EGHEKG-VNCVDYYHGGDKPYLISG---ADDRLVKIWDYQNKTC  221 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~~~l~s~---s~d~~i~iwd~~~~~~  221 (229)
                      ++.|+.|++||+++++.+..+ .+|... +.++.|.  +++.+|++|   +.|+.|++||+++++.
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV--SEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC--STTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc--CCCcEEEEeccCCCCceEEEEcCccccC
Confidence            999999999999999888888 688765 7888885  456688888   7999999999988653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=4.4e-31  Score=216.15  Aligned_cols=205  Identities=10%  Similarity=0.034  Sum_probs=155.4

Q ss_pred             hhhcccCCCceEEEEEcc--------CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCC
Q psy4653           8 KRKLTARSDRVKCCDLHP--------TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDD   78 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p--------~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d   78 (229)
                      ...+.||++.|++++|+|        ++++|++++.|++|+|||++++..+..+..+..++.++.|+|++ ++|++|+.|
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence            456889999999999998        78899999999999999999988888888888899999999987 489999999


Q ss_pred             CeEEEEECCCcceEEE-------------------------eccCCCceeEEEEc-CCCCEEEEEeCCCcEEEEecCCce
Q psy4653          79 MQVCVFNYNTLERFHS-------------------------FEAHSDYVRCVAVH-PTQPFLLTSSDDMLIKLWNWEKAW  132 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~-------------------------~~~h~~~i~~v~~~-~~~~~~~s~~~d~~v~lwd~~~~~  132 (229)
                      +.|++||+.+++....                         ..+|...+.++.|+ |++..+++++.|+++++||+....
T Consensus       209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~  288 (393)
T 4gq1_A          209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN  288 (393)
T ss_dssp             SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred             CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence            9999999987643221                         23567788899987 799999999999999999986543


Q ss_pred             eeeeeeecceeeEE------------------EEEEcCC-CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEE
Q psy4653         133 ACQQVFEGHTHYVM------------------QIVINPK-DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDY  193 (229)
Q Consensus       133 ~~~~~~~~~~~~v~------------------~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  193 (229)
                      . ...+..|...+.                  ...++|. ++.++++|+.|++|++||..++.+.....+|..+|.+++|
T Consensus       289 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf  367 (393)
T 4gq1_A          289 D-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW  367 (393)
T ss_dssp             ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred             C-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence            2 222222322222                  2223333 3445677889999999999999888888889899999999


Q ss_pred             EeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         194 YHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       194 ~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      +  +++++|++++.|| +.+|.+
T Consensus       368 s--pdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          368 H--QDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             C--TTSSEEEEEESSE-EEEEEE
T ss_pred             c--CCCCEEEEEeCCC-eEEEEE
Confidence            4  5677999998876 555544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=1.2e-30  Score=209.73  Aligned_cols=204  Identities=14%  Similarity=0.205  Sum_probs=168.8

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEE--cCCCCEEEEEeCCCeEEEEEC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF--VPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ..+.+|..+|.+++|+|+++.|++++.||.|++||+++++.+. +..+..++.++.|  +|++++|++|+.|+.|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            5678999999999999999999999999999999999988766 4568889999999  889999999999999999999


Q ss_pred             CCcceEEEeccCC-----------------------------------------CceeEEEEcCCCCE----EEEEeCCC
Q psy4653          87 NTLERFHSFEAHS-----------------------------------------DYVRCVAVHPTQPF----LLTSSDDM  121 (229)
Q Consensus        87 ~~~~~~~~~~~h~-----------------------------------------~~i~~v~~~~~~~~----~~s~~~d~  121 (229)
                      ++++.+..+..+.                                         ..+.++.+.++...    +++++.|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg  238 (368)
T 3mmy_A          159 RSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG  238 (368)
T ss_dssp             SCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred             CCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence            8877655554332                                         23445555544443    99999999


Q ss_pred             cEEEEecCCce--eeeeeeeccee------------eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCc
Q psy4653         122 LIKLWNWEKAW--ACQQVFEGHTH------------YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG  187 (229)
Q Consensus       122 ~v~lwd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~  187 (229)
                      .|++||++...  .....+.+|..            +|.++.|+| ++.+|++|+.|+.|++||+.+++++..+.+|...
T Consensus       239 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  317 (368)
T 3mmy_A          239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP  317 (368)
T ss_dssp             EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC
T ss_pred             cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC
Confidence            99999997653  23455666665            799999998 6789999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         188 VNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       188 v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      +.+++|.  +++.+|++|+.|+..+.|++
T Consensus       318 v~~~~~s--~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          318 ISACCFN--HNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEEEEC--TTSSCEEEEECCCSTTCGGG
T ss_pred             ceEEEEC--CCCCeEEEEecccccccccc
Confidence            9999994  46678999998876554443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.1e-31  Score=238.21  Aligned_cols=215  Identities=10%  Similarity=0.062  Sum_probs=171.2

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE--EEEE---------ecCcCeEEEEEcCCCCEEEEEeCC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV--KSFE---------VCDLPVRAAKFVPRKNWIVTGSDD   78 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~---------~~~~~v~~~~~~~~~~~l~sg~~d   78 (229)
                      .+.||...|.+++|+|+++.|++|+.|++|++||+.++...  ..+.         .|...|.+++|+|++++||+|+.|
T Consensus       430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred             cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence            46778888888889999999999999999999999987532  1122         466789999999999999999999


Q ss_pred             CeEEEEECCCcc---------------------------------------------eEEEeccCCCceeEEEEcCCCCE
Q psy4653          79 MQVCVFNYNTLE---------------------------------------------RFHSFEAHSDYVRCVAVHPTQPF  113 (229)
Q Consensus        79 ~~i~iwd~~~~~---------------------------------------------~~~~~~~h~~~i~~v~~~~~~~~  113 (229)
                      |.|++||+++++                                             ++..+.+|.+.|++|+|+|+| +
T Consensus       510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~  588 (902)
T 2oaj_A          510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F  588 (902)
T ss_dssp             SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred             cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence            999999987552                                             356778899999999999999 9


Q ss_pred             EEEEeCCCcEEEEecCCceeee----eeee-cceeeEEEEEEc-----CCC--CCEEEEEECCCcEEEEeC---CCCCce
Q psy4653         114 LLTSSDDMLIKLWNWEKAWACQ----QVFE-GHTHYVMQIVIN-----PKD--NNTFASASLDRTVKVWQL---GSASPN  178 (229)
Q Consensus       114 ~~s~~~d~~v~lwd~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~--~~~l~s~~~d~~i~~wd~---~~~~~~  178 (229)
                      +++|+.|++|+|||++......    ..+. +|...|++++|+     |+.  +.+|++|+.|++|++||+   .+++.+
T Consensus       589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred             EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence            9999999999999997654322    2233 889999999999     732  479999999999999999   677777


Q ss_pred             EEEecC-----CCceEEEE-EEeC--------------------CCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         179 FTLEGH-----EKGVNCVD-YYHG--------------------GDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       179 ~~~~~h-----~~~v~~~~-~~~~--------------------~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ..+.+|     ...|..++ |...                    .++ +++.++ +..||||+..+++++++...
T Consensus       669 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~l~~~-~~~ir~~~~~~~k~~~k~~~  741 (902)
T 2oaj_A          669 VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPG-IVLITG-FDDIRLITLGKSKSTHKGFK  741 (902)
T ss_dssp             EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCE-EEEEEC-SSEEEEECTTCCCEEEEECS
T ss_pred             EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCe-EEEEEe-ccceEEEeCccccceeeEcc
Confidence            777666     35666666 4300                    233 333333 77999999999999887643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.2e-30  Score=209.66  Aligned_cols=197  Identities=11%  Similarity=0.122  Sum_probs=159.0

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcC---------CCCeEEEEE-ecCcCeEEEEEcC--CCCEEEEEeCCCeEEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHE---------TNQNVKSFE-VCDLPVRAAKFVP--RKNWIVTGSDDMQVCV   83 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~sg~~d~~i~i   83 (229)
                      ..|.++.|+|+   +++++.|+.|++|+..         +++.+..+. .+..+|.++.|+|  ++++|++|+.||.|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            56788889988   9999999999999665         555455544 4556899999999  9999999999999999


Q ss_pred             EECCCcceEEEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEE
Q psy4653          84 FNYNTLERFHSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        84 wd~~~~~~~~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      ||+++++.+..... |...|.+++|+|++.++++|+.|+.|++||++........+.+ |..+|.++.|+| ++.+|+++
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~  232 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVE  232 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEE
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEE
Confidence            99999888766543 4558999999999999999999999999999887555356676 999999999998 68899999


Q ss_pred             ECCCcEEEEeCCCCCceEEEec---CCCceE--EEEEEeCCCcCEEEEeeC-CCeEEEEECCCC
Q psy4653         162 SLDRTVKVWQLGSASPNFTLEG---HEKGVN--CVDYYHGGDKPYLISGAD-DRLVKIWDYQNK  219 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~~~---h~~~v~--~~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~  219 (229)
                      + |+.|++||++..+....+..   |...+.  +++|  ++++.+|++++. |+.|++|++.+.
T Consensus       233 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          233 C-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI--DDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             E-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE--CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             e-CCeEEEEEcCCCCcceeecccccccccccceEEEE--CCCCCEEEEecCCCCcEEEEEEccc
Confidence            9 44999999998876655443   333343  5777  456779999998 999999999654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=9.8e-31  Score=219.01  Aligned_cols=195  Identities=13%  Similarity=0.171  Sum_probs=162.8

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc-----CeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL-----PVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .|.+.|.+++|+|+|..|++++.||.|++||..+  ++..+. ++.     .+.+++|+|+|++|++|+.||+|++||++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            4588999999999999999999999999999655  555555 554     49999999999999999999999999998


Q ss_pred             Ccc-------eEEEe----ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee--eeeee-ecceeeEEEEEEcCC
Q psy4653          88 TLE-------RFHSF----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA--CQQVF-EGHTHYVMQIVINPK  153 (229)
Q Consensus        88 ~~~-------~~~~~----~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~--~~~~~-~~~~~~v~~~~~~~~  153 (229)
                      +++       .+..+    .+|.+.|.+++|+|++  +++++.|++|++||+..+..  ..+.+ .+|...|..++|+  
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            875       25665    6778899999999999  88899999999999977642  12334 4788889999997  


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                       +..+|+++ +++|++||+..++......+|...+..++|.+++++..|++++.||+ ++|..+
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             47888887 69999999987765333338999999999844456678999999999 999987

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=7.4e-32  Score=220.74  Aligned_cols=214  Identities=8%  Similarity=0.042  Sum_probs=150.8

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE-----EEEecCcCeEEEEEcC--------CCCEEEEEeCCCe
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK-----SFEVCDLPVRAAKFVP--------RKNWIVTGSDDMQ   80 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~sg~~d~~   80 (229)
                      |...+....++|++..+++++.|++|++||+++++...     .+..|...|.++.|+|        ++++||+|+.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            33344444556667789999999999999999886543     2456888999999998        7889999999999


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeee-----------------------
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQ-----------------------  136 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~-----------------------  136 (229)
                      |+|||++++..+..+..|...|.+++|+|++. ++++++.|++|++||+........                       
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            99999988888888888999999999999875 799999999999999876432211                       


Q ss_pred             -eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEE------------------EEEeCC
Q psy4653         137 -VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV------------------DYYHGG  197 (229)
Q Consensus       137 -~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~------------------~~~~~~  197 (229)
                       ...+|...+..+.|.+.++..+++++.|+++++||+..+.....+..|...+..+                  .+.+..
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY  327 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence             1135666777888876688999999999999999998766555554443333222                  233334


Q ss_pred             CcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         198 DKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       198 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++.++++|+.||.|+|||+.+++++.++..
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~  357 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQ  357 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            455788899999999999999877666543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=217.90  Aligned_cols=196  Identities=13%  Similarity=0.182  Sum_probs=158.1

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE-----------------------------EEEE-ecCcCeEE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV-----------------------------KSFE-VCDLPVRA   62 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~-----------------------------~~~~-~~~~~v~~   62 (229)
                      .....|.+++|+|||+.+++++.|++|+  |...++.+                             ..+. .++..|.+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            3457899999999999999999999996  54443321                             1111 23567999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-----ceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee----
Q psy4653          63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-----YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA----  133 (229)
Q Consensus        63 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-----~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~----  133 (229)
                      +.|+|+|+.||+++.||.+++||.+.  .+..+. |..     .|.+++|||+++++++|+.||+|++||+..+..    
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence            99999999999999999999999654  666666 665     599999999999999999999999999987532    


Q ss_pred             --eeeee----ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc---eEEE-ecCCCceEEEEEEeCCCcCEEE
Q psy4653         134 --CQQVF----EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP---NFTL-EGHEKGVNCVDYYHGGDKPYLI  203 (229)
Q Consensus       134 --~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~-~~h~~~v~~~~~~~~~~~~~l~  203 (229)
                        ....+    .+|...|.+++|+| ++  +++++.|+++++||+.....   ..++ .+|...|.+++|.  +  ++|+
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g--~~LA  240 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D--YKVV  240 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T--TEEE
T ss_pred             ceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C--CEEE
Confidence              23444    67888999999998 55  88899999999999987763   3456 4788889999996  2  5788


Q ss_pred             EeeCCCeEEEEECCCCeE
Q psy4653         204 SGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       204 s~s~d~~i~iwd~~~~~~  221 (229)
                      +++ +++|++||+.+++.
T Consensus       241 Sa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          241 LTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             EEC-SSEEEEEETTTTEE
T ss_pred             EEe-CCeEEEEECCCCeE
Confidence            887 69999999998877

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5.7e-29  Score=198.59  Aligned_cols=198  Identities=16%  Similarity=0.126  Sum_probs=169.8

Q ss_pred             hhccc--CCCceEEEEEccCCCeEEEEEecCeEEEEEcCC---------CCeEEEEEecCcCeEEEEEcCCCCEEEEEeC
Q psy4653           9 RKLTA--RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET---------NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus         9 ~~~~~--~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      ..+.+  |..+|.+++|+| +..+++++.|+.|++||+++         ++.+..+. +...+.++.|+|++  +++++.
T Consensus        93 ~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~  168 (342)
T 1yfq_A           93 QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMN  168 (342)
T ss_dssp             EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEES
T ss_pred             EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeC
Confidence            45677  999999999999 99999999999999999988         76666665 67789999999877  999999


Q ss_pred             CCeEEEEECCC-cce--EEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCc-----eeeeeeeeccee-----
Q psy4653          78 DMQVCVFNYNT-LER--FHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKA-----WACQQVFEGHTH-----  143 (229)
Q Consensus        78 d~~i~iwd~~~-~~~--~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~-----~~~~~~~~~~~~-----  143 (229)
                      |+.|++||+++ +..  ......|...|.+++|+| ++.++++++.|+.|++|+++..     ......+.+|..     
T Consensus       169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T 1yfq_A          169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence            99999999987 542  334456788999999999 9999999999999999999765     345666777755     


Q ss_pred             ----eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC-CCceEEEEEEeCCCcCEEEEeeCCCe-EEEEE
Q psy4653         144 ----YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGADDRL-VKIWD  215 (229)
Q Consensus       144 ----~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~-i~iwd  215 (229)
                          .|.++.|+| ++.+|++++.|+.|++||+.+++.+..+.+| ...|.+++  +  ++.+|++|+.||. .+.|.
T Consensus       249 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~--~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          249 NLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C--SDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E--CSSEEEEEEECTHHHHCSS
T ss_pred             ccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C--CCCeEEEEecCCccccccc
Confidence                899999998 6889999999999999999999999999998 89999888  3  5568999999998 54444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.7e-28  Score=193.97  Aligned_cols=175  Identities=13%  Similarity=0.230  Sum_probs=148.9

Q ss_pred             hhhhhcccCCCceEEEEEcc--CCCeEEEEEecCeEEEEEcCCC---------CeEEEEEecCcCeEEEEEcCC--CCEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHP--TEPWMLASLYNGHVHVWNHETN---------QNVKSFEVCDLPVRAAKFVPR--KNWI   72 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l   72 (229)
                      +....+.+|..+|.+++|+|  ++..|++++.||.|++||++++         +.+..+..+...+.++.|+|+  +++|
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            34556789999999999999  5999999999999999999987         446677778889999999999  9999


Q ss_pred             EEEeCCCeEEEEECCCcc------------------------------------------------------------eE
Q psy4653          73 VTGSDDMQVCVFNYNTLE------------------------------------------------------------RF   92 (229)
Q Consensus        73 ~sg~~d~~i~iwd~~~~~------------------------------------------------------------~~   92 (229)
                      ++|+.|+.|++||+.+++                                                            .+
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            999999999999986432                                                            14


Q ss_pred             EEeccCCCceeEEEEcCCC----CEEEEEeCCCcEEEEecCCc-------------------------------------
Q psy4653          93 HSFEAHSDYVRCVAVHPTQ----PFLLTSSDDMLIKLWNWEKA-------------------------------------  131 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~----~~~~s~~~d~~v~lwd~~~~-------------------------------------  131 (229)
                      ..+.+|...|.+++|+|++    .++++++.|+.|++||++..                                     
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            4556788999999999998    78999999999999998753                                     


Q ss_pred             --------eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE
Q psy4653         132 --------WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL  181 (229)
Q Consensus       132 --------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  181 (229)
                              ......+.+|...|..+.|+| ++.+|++|+.|+.|++||+..+.....+
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                    134455678999999999998 6789999999999999999877654433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.8e-26  Score=188.92  Aligned_cols=212  Identities=13%  Similarity=0.126  Sum_probs=175.9

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT   88 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~   88 (229)
                      .+.+|...|.+++|+|++..+++++.|+.|++||+++++.+..+..+...+.++.|+|+++.+ ++++.|+.|.+||+++
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            466899999999999999999999999999999999999988888788889999999999977 4555899999999999


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEe--------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSS--------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~--------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ++.+..+..+ ..+.+++|+|+++.+++++        .|+.|++||+...... ... .|...+..+.|+|....++++
T Consensus       244 ~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          244 KLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI-DTI-GPPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE-EEE-EEEECEEEEEECSSTTEEEEE
T ss_pred             CcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE-eec-cCCCCcceEEECCCCCEEEEE
Confidence            8888777654 4589999999999998887        5889999999876432 222 455678899999854346678


Q ss_pred             EECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeC---------------CCeEEEEECCCCeEEEee
Q psy4653         161 ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD---------------DRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---------------d~~i~iwd~~~~~~~~~~  225 (229)
                      ++.|+.|++||+.+++.+..+. +...+.+++|.  +++.+|++++.               ||.|++||..+++.+..+
T Consensus       321 ~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALS--PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC--TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             ecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEc--CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            8899999999999887776665 56678889885  45566777665               579999999999988877


Q ss_pred             cc
Q psy4653         226 ES  227 (229)
Q Consensus       226 ~~  227 (229)
                      ..
T Consensus       398 ~~  399 (433)
T 3bws_A          398 EA  399 (433)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.8e-27  Score=189.74  Aligned_cols=198  Identities=14%  Similarity=0.195  Sum_probs=154.2

Q ss_pred             CceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-------------------------
Q psy4653          16 DRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-------------------------   69 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------   69 (229)
                      ..+..+++.++++.++ +|+.|+.|++||..+++.+..+. +..++.++.|+++.                         
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  137 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDI  137 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCE
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEec
Confidence            3588899999988884 56788999999999999888776 44578888887642                         


Q ss_pred             ----------CEEEE--EeCCCeEEEEECCCcc---------------e-EEEeccCCCceeEEEEcCCCCEEEEEeCCC
Q psy4653          70 ----------NWIVT--GSDDMQVCVFNYNTLE---------------R-FHSFEAHSDYVRCVAVHPTQPFLLTSSDDM  121 (229)
Q Consensus        70 ----------~~l~s--g~~d~~i~iwd~~~~~---------------~-~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~  121 (229)
                                ++++.  |+.||.|++||+++++               + +..+.+|.+.|.+++|+|++.++++++.|+
T Consensus       138 ~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          138 RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             cCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence                      23444  6788999999998754               1 677889999999999999999999999999


Q ss_pred             c-EEEEecCCceeeeeeee-c-ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc--eEEE---------------
Q psy4653         122 L-IKLWNWEKAWACQQVFE-G-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP--NFTL---------------  181 (229)
Q Consensus       122 ~-v~lwd~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~---------------  181 (229)
                      + |++||++.... ...+. + |...|.+++|+| ++.+|++++.|++|++||+.....  ...+               
T Consensus       218 ~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T 3vu4_A          218 TIIRVFKTEDGVL-VREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL  295 (355)
T ss_dssp             SEEEEEETTTCCE-EEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred             CEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence            8 99999987644 44455 5 899999999998 689999999999999999975421  1111               


Q ss_pred             -----ec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         182 -----EG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       182 -----~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                           .. +......++|  .+++.+|++++.||.+++|++..
T Consensus       296 ~~~~~~~~~~~~~~~~a~--~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          296 CNFKLSVDKHVRGCKIAW--ISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEEECCCCTTCCCCEEEE--SSSSEEEEEETTTTEEEEEEEEE
T ss_pred             eEEEeccCCCCCceEEEE--eCCCCEEEEEeCCCeEEEEEEEc
Confidence                 10 1112245666  45667899999999999999865

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6.1e-26  Score=184.55  Aligned_cols=212  Identities=11%  Similarity=0.063  Sum_probs=169.3

Q ss_pred             hhhcccCCCceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFN   85 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd   85 (229)
                      .+.+.+| ..+.+++|+|+++.++ +++.|+.|++||+.+++.+..+..+. .+.++.|+|++++|+ +++.++.|.+||
T Consensus        25 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           25 TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID  102 (391)
T ss_dssp             EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence            3445555 4689999999999875 55689999999999999888877655 899999999999775 555779999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE-EEEEC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF-ASASL  163 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~  163 (229)
                      +++++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+.... ....+..+ ..+..+.|+| ++..+ ++++.
T Consensus       103 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~  178 (391)
T 1l0q_A          103 TTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTP-DGTKVYVANFD  178 (391)
T ss_dssp             TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECT-TSSEEEEEETT
T ss_pred             CCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-CCcceEEECC-CCCEEEEEeCC
Confidence            9998887777654 568999999999977 688889999999998764 34444444 3458889998 45555 67889


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee---CCCeEEEEECCCCeEEEeeccC
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA---DDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |+.|++||+++++....+.. ...+.+++|.  +++.+|++++   .|+.|++||+++++++..++.+
T Consensus       179 ~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~--~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  243 (391)
T 1l0q_A          179 SMSISVIDTVTNSVIDTVKV-EAAPSGIAVN--PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG  243 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-SSEEEEEEEC--TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred             CCEEEEEECCCCeEEEEEec-CCCccceEEC--CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC
Confidence            99999999998877666654 4568888884  4556777776   7999999999999988887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=9.5e-28  Score=190.00  Aligned_cols=161  Identities=12%  Similarity=0.119  Sum_probs=128.6

Q ss_pred             hhhcccCCCceEEEEEcc---CCCeEEEEEecCeEEEEEcCCCCeEEEEEecC---cCeEEEEEcCCCCEE---------
Q psy4653           8 KRKLTARSDRVKCCDLHP---TEPWMLASLYNGHVHVWNHETNQNVKSFEVCD---LPVRAAKFVPRKNWI---------   72 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p---~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l---------   72 (229)
                      ...+.+|+..|..++|+|   +++.|++|+.|++|+|||+.+++.+..+..+.   ..+.++.|+|+++++         
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence            344667888888888888   67889999999999999999999999987543   357788999999876         


Q ss_pred             ---EEEeCCCeEEEEECCCcceEEEe-----ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee
Q psy4653          73 ---VTGSDDMQVCVFNYNTLERFHSF-----EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY  144 (229)
Q Consensus        73 ---~sg~~d~~i~iwd~~~~~~~~~~-----~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~  144 (229)
                         ++|+.|++|++||..+++.+..+     .+|...+.+..++  +..+++++.|++|+|||+..+ ++...+.+|...
T Consensus       251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~  327 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQ  327 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-SEEEEECCC--C
T ss_pred             ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCC
Confidence               66888999999999999877654     3666655444444  778999999999999999877 456677888776


Q ss_pred             EE-EEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653         145 VM-QIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus       145 v~-~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      +. .++|+| ++.+|+||+.|++|++||+
T Consensus       328 vvs~vafSP-DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSG-TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence            55 589999 7899999999999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.2e-25  Score=182.77  Aligned_cols=212  Identities=15%  Similarity=0.116  Sum_probs=171.4

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFN   85 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd   85 (229)
                      .+.+..+. .+.+++|+|+++.+++++ .++.|++||+.+++.+..+..+ ..+.++.|+|+++.| ++++.|+.|.+||
T Consensus        67 ~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  144 (391)
T 1l0q_A           67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVIN  144 (391)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34445443 899999999999887665 6799999999999888777654 468999999999977 7888899999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE--
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS--  162 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--  162 (229)
                      +++++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||++.... ...+. +...+..+.++| ++.++++++  
T Consensus       145 ~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~  220 (391)
T 1l0q_A          145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNP-EGTKAYVTNVD  220 (391)
T ss_dssp             TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECT-TSSEEEEEEEC
T ss_pred             CCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEe-cCCCccceEECC-CCCEEEEEecC
Confidence            9998888877765 457999999999977 6778899999999987643 33333 345678899998 577777776  


Q ss_pred             -CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEE-EEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         163 -LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       163 -~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                       .++.|++||+.+++.+..+..|. .+.+++|.  +++.+| ++++.|+.|++||+.+++.+.+++.+
T Consensus       221 ~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s--~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          221 KYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT--PDGKKVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             SSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             cCCCcEEEEECCCCeEEEEEecCC-CccEEEEc--cCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence             78999999999888888887765 46778884  455555 67889999999999999999888654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=7.6e-26  Score=186.34  Aligned_cols=211  Identities=10%  Similarity=0.088  Sum_probs=168.5

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-----EecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-----EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      .+..+ ..+.+++|+|++..+++++.++.|++||+.+++.....     ..+...+.++.|+++++++++++.|+.|++|
T Consensus       118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~  196 (433)
T 3bws_A          118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF  196 (433)
T ss_dssp             EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred             EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence            34433 45679999997766777778899999999999887633     3455679999999999999999999999999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE-
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS-  162 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-  162 (229)
                      |+++++.+..+..|...+.+++|+|++..++ +++.|+.|++||++.... ...+..+ ..+..+.++| ++..+++++ 
T Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~-~g~~l~~~~~  273 (433)
T 3bws_A          197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDKI-GLPRGLLLSK-DGKELYIAQF  273 (433)
T ss_dssp             ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCCC-SEEEEEEECT-TSSEEEEEEE
T ss_pred             ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecCC-CCceEEEEcC-CCCEEEEEEC
Confidence            9999998888888999999999999999875 555899999999987643 3444433 4588999998 577888777 


Q ss_pred             -------CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         163 -------LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       163 -------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                             .|+.|++||+.+++.+..+ .|...+.+++|.+  +++ ++++++.|+.|++||+++++.+..+..
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~--~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  343 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGN--TENKIYVSDMCCSKIEVYDLKEKKVQKSIPV  343 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECS--STTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECC--CCCEEEEEecCCCEEEEEECCCCcEEEEecC
Confidence                   4889999999887665544 3445677888854  443 667789999999999999998877653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=4.6e-24  Score=175.80  Aligned_cols=211  Identities=9%  Similarity=0.003  Sum_probs=164.3

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecC---eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCC--eE
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNG---HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDM--QV   81 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~--~i   81 (229)
                      .+.+.+|...|.+++|+|+++.|++++.++   .|++||+.+++.. .+..+...+.++.|+|+|+.|+ +++.++  .|
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            355778999999999999999999999875   9999999998875 4555667899999999999877 666665  49


Q ss_pred             EEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeC-CC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-DM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      .+||+++++. ..+..|...+.+++|+|+++.++.++. ++  .|++||+.....  ..+..+...+..+.|+| ++.+|
T Consensus       250 ~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~sp-dG~~l  325 (415)
T 2hqs_A          250 YVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSS-DGKFM  325 (415)
T ss_dssp             EEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCCSSSEEEEEEECT-TSSEE
T ss_pred             EEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE--EEEecCCCcccCeEECC-CCCEE
Confidence            9999988765 566778889999999999998887775 45  677778876532  23344566788999998 67888


Q ss_pred             EEEECC---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC---eEEEEECCCCeEEEeeccC
Q psy4653         159 ASASLD---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR---LVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       159 ~s~~~d---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++++.+   ..|++||+.+++. ..+..+. .+.+++|.  +++.+|++++.|+   .|.+||+..+ ....++.+
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~s--pdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~  396 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLA--PNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPAT  396 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEEC--TTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCS
T ss_pred             EEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEc--CCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCC
Confidence            877754   5899999987765 3455554 67888884  5667788888776   7999999754 45666544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.1e-24  Score=180.58  Aligned_cols=199  Identities=12%  Similarity=0.067  Sum_probs=151.5

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCC----------CeEEEE-----EecCcCeEEEEEcCCCCEEE----EE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN----------QNVKSF-----EVCDLPVRAAKFVPRKNWIV----TG   75 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~l~----sg   75 (229)
                      ...++.++++|++..+++++.++ +++|+...-          ..+..+     ..+...+.++.|+|++++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999998887 889885321          011110     11345699999999999999    78


Q ss_pred             eCCCeEEEEECCCc--------c---eEEEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeeccee
Q psy4653          76 SDDMQVCVFNYNTL--------E---RFHSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH  143 (229)
Q Consensus        76 ~~d~~i~iwd~~~~--------~---~~~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~  143 (229)
                      +.|+.|++||+++.        +   .+..+.+|...|.+++|+|+ +.++++++.|++|++||++.... .....+|..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCC
Confidence            89999999998654        1   24556779999999999998 78999999999999999987633 334456888


Q ss_pred             eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC-------CceEEEEEEeCCCcCEEEE-eeCCC------
Q psy4653         144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE-------KGVNCVDYYHGGDKPYLIS-GADDR------  209 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~l~s-~s~d~------  209 (229)
                      .+.+++|+| ++.+|++|+.|+.|++||.+ +.....+..|.       ..+.+++|..  +..++++ +..||      
T Consensus       194 ~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~--~~~~l~~~~~~dg~~~~~~  269 (434)
T 2oit_A          194 AVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG--TYVFAIVYAAADGTLETSP  269 (434)
T ss_dssp             CEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE--TTEEEEEEEETTCCSSSCC
T ss_pred             ceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec--CceEEEEEccCCCccCCCC
Confidence            999999999 68999999999999999998 55555554442       2677888864  4445543 44453      


Q ss_pred             eEEEEECCCC
Q psy4653         210 LVKIWDYQNK  219 (229)
Q Consensus       210 ~i~iwd~~~~  219 (229)
                      .+++|++++.
T Consensus       270 ~v~i~~l~~~  279 (434)
T 2oit_A          270 DVVMALLPKK  279 (434)
T ss_dssp             EEEEEECCCT
T ss_pred             ceEEEEeccC
Confidence            3899999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=9.1e-23  Score=158.64  Aligned_cols=206  Identities=8%  Similarity=-0.002  Sum_probs=154.6

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCC-CCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC--CCeEEEE-
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHET-NQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD--DMQVCVF-   84 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~--d~~i~iw-   84 (229)
                      .+..|...|.+++|+|+++.+++++ ++.|.+||+.+ ++.......+. ..+.++.|+|++++|++++.  ++...|| 
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            4567888999999999999888876 89999999999 87766554442 56888999999999999983  3444555 


Q ss_pred             -ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          85 -NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        85 -d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                       +..+++ ...+..+ ..+.+++|+|+++.++ +++.++.+++|+++........+..+...+..+.|+| ++..++.++
T Consensus       115 ~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~  191 (297)
T 2ojh_A          115 LPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNS  191 (297)
T ss_dssp             EETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred             EECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEe
Confidence             555544 3444433 3488999999999876 7888999999996432222344455667789999998 567666555


Q ss_pred             -CCCcEEEEeCC-CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----------CeEEEEECCCCeE
Q psy4653         163 -LDRTVKVWQLG-SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----------RLVKIWDYQNKTC  221 (229)
Q Consensus       163 -~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~  221 (229)
                       .|+.+++|++. .......+..|...+.+++|.  +++.+|++++.+           +.|.+||+++++.
T Consensus       192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS--PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC--TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cCCCCccEEEECCCCCCcEEEecCCcccCCeEEC--CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence             69999999986 455666777777777888884  466678777765           5699999988764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=3.4e-22  Score=164.61  Aligned_cols=206  Identities=8%  Similarity=0.027  Sum_probs=158.6

Q ss_pred             hhcccCCCceEEEEEccC--------------CCeEEEEEec------CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC
Q psy4653           9 RKLTARSDRVKCCDLHPT--------------EPWMLASLYN------GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR   68 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~--------------~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~   68 (229)
                      +.+.+|...+..+++++.              +..++.++.+      +.|++||+..+ ....+..+...+.++.|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC
Confidence            457788888888887752              5566666654      79999999854 45666777889999999999


Q ss_pred             CCEEEEEeCCC---eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCc--EEEEecCCceeeeeeeecce
Q psy4653          69 KNWIVTGSDDM---QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDML--IKLWNWEKAWACQQVFEGHT  142 (229)
Q Consensus        69 ~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~--v~lwd~~~~~~~~~~~~~~~  142 (229)
                      |+.|++++.++   .|.+||+++++.. .+..|...+.+++|+|+++.++ +++.|+.  |++||+.....  ..+..|.
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~  266 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGR  266 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCC
Confidence            99999999885   8999999988764 4666888999999999999877 6766655  99999976532  4455677


Q ss_pred             eeEEEEEEcCCCCCEEEEEEC-CC--cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCC---CeEEEEEC
Q psy4653         143 HYVMQIVINPKDNNTFASASL-DR--TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADD---RLVKIWDY  216 (229)
Q Consensus       143 ~~v~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---~~i~iwd~  216 (229)
                      ..+..+.|+| ++..|++++. ++  .|.+||+.+++. ..+..+...+.+++|+  +++.+|++++.+   ..|.+||+
T Consensus       267 ~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s--pdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          267 SNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEEC--TTSSEEEEEEECSSCEEEEEEET
T ss_pred             CcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEEC--CCCCEEEEEECcCCceEEEEEEC
Confidence            7899999998 6788887775 45  677778877653 3455566677888884  466678777754   58999999


Q ss_pred             CCCeEE
Q psy4653         217 QNKTCV  222 (229)
Q Consensus       217 ~~~~~~  222 (229)
                      .++++.
T Consensus       343 ~~~~~~  348 (415)
T 2hqs_A          343 ATGGVQ  348 (415)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            988764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.1e-21  Score=166.79  Aligned_cols=215  Identities=12%  Similarity=0.143  Sum_probs=164.4

Q ss_pred             hhhcc-cCCCceEEEEEccCCCeEEEEEecCeEEEEEc--CCCCeEEEEEecCcCeEEEEEcC----CCCEEEEEe-CCC
Q psy4653           8 KRKLT-ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNH--ETNQNVKSFEVCDLPVRAAKFVP----RKNWIVTGS-DDM   79 (229)
Q Consensus         8 ~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~sg~-~d~   79 (229)
                      ...+. ++.  +.+++|+|++++|++++.|+.|.+||+  .+++.+..+... .....+.|+|    +|++|++++ .++
T Consensus       172 ~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~~~~~~  248 (543)
T 1nir_A          172 VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAGAYWPP  248 (543)
T ss_dssp             EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEEEccCC
Confidence            34455 443  899999999999999999999999999  888888877743 4579999999    999999988 489


Q ss_pred             eEEEEECCCcceEEEecc----------CC-CceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEE
Q psy4653          80 QVCVFNYNTLERFHSFEA----------HS-DYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ  147 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~----------h~-~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~  147 (229)
                      +|.+||..+++.+..+..          |. ..+.++.++|++.. +++...+++|.+||......+......+...+..
T Consensus       249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~  328 (543)
T 1nir_A          249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHD  328 (543)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCC
T ss_pred             eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccC
Confidence            999999999988877654          22 37889999998775 5677788999999987653322111224445677


Q ss_pred             EEEcCCCCCEEE-EEECCCcEEEEeCCCCCceEEEec----CCCceEEEEEEeCCCcCEEEEee-CCCeEEEEECCC---
Q psy4653         148 IVINPKDNNTFA-SASLDRTVKVWQLGSASPNFTLEG----HEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQN---  218 (229)
Q Consensus       148 ~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~---  218 (229)
                      +.|+| ++.+++ ++..+++|.+||..+++.+..+..    |.....  .|.+...+.+++|+. .|++|.+||+.+   
T Consensus       329 ~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~--~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~  405 (543)
T 1nir_A          329 GGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA--NFVHPKYGPVWSTSHLGDGSISLIGTDPKNH  405 (543)
T ss_dssp             EEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE--EEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             ceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc--ccCCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence            88998 677665 445689999999999988877764    543332  233333456777776 689999999998   


Q ss_pred             ----CeEEEeeccC
Q psy4653         219 ----KTCVQTLESG  228 (229)
Q Consensus       219 ----~~~~~~~~~~  228 (229)
                          .+++++++.+
T Consensus       406 ~~~~~~~v~~l~~~  419 (543)
T 1nir_A          406 PQYAWKKVAELQGQ  419 (543)
T ss_dssp             TTTBTSEEEEEECS
T ss_pred             chhcCeEEEEEEcC
Confidence                8999999865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=2.1e-21  Score=165.01  Aligned_cols=200  Identities=9%  Similarity=0.123  Sum_probs=160.7

Q ss_pred             EEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCcceEEEeccCC
Q psy4653          22 DLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY--NTLERFHSFEAHS   99 (229)
Q Consensus        22 ~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~--~~~~~~~~~~~h~   99 (229)
                      .|+|++..++++..|++|.+||..+++++..+..... +.++.|+|++++|++++.|+.|.+||+  ++++.+..+. +.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence            4899998888888999999999999999988875443 889999999999999999999999999  7888888777 44


Q ss_pred             CceeEEEEcC----CCCEEEEEeC-CCcEEEEecCCceeeeeeeec----------cee-eEEEEEEcCCCCCEEEEEEC
Q psy4653         100 DYVRCVAVHP----TQPFLLTSSD-DMLIKLWNWEKAWACQQVFEG----------HTH-YVMQIVINPKDNNTFASASL  163 (229)
Q Consensus       100 ~~i~~v~~~~----~~~~~~s~~~-d~~v~lwd~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~s~~~  163 (229)
                      .....++|+|    +++++++++. +++|.+||....... ..+..          |.. .+..+.++|..+.++++...
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            5679999999    9999988874 899999998776433 33332          222 57888999866667888889


Q ss_pred             CCcEEEEeCCCCCceE--EEecCCCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECCCCeEEEeecc
Q psy4653         164 DRTVKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +++|.+||+.+.+.+.  .+. +...+..+.|.  +++++|+ ++..+++|.+||.++++++.+++.
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s--pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD--SSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC--TTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEEecCCCcceeEEec-cCcCccCceEC--CCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence            9999999998765443  333 45557778884  4566655 455689999999999999988874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.7e-22  Score=166.17  Aligned_cols=159  Identities=14%  Similarity=0.050  Sum_probs=126.0

Q ss_pred             CCCceEEEEEccCCCeEE----EEEecCeEEEEEcCCC--------Ce---EEEEEecCcCeEEEEEcCC-CCEEEEEeC
Q psy4653          14 RSDRVKCCDLHPTEPWML----ASLYNGHVHVWNHETN--------QN---VKSFEVCDLPVRAAKFVPR-KNWIVTGSD   77 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~----~~~~dg~v~~wd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~sg~~   77 (229)
                      |..+|.+++|+|++++|+    +|+.|+.|++||+.++        +.   ...+..|...|.++.|+|+ +++|++|+.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            556799999999999999    6778999999998764        22   3344457789999999998 789999999


Q ss_pred             CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee-------cceeeEEEEEE
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-------GHTHYVMQIVI  150 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-------~~~~~v~~~~~  150 (229)
                      ||.|++||++++..+....+|...|.+++|+|++++|++|+.|++|++||++ ... ...+.       .|...+..+.|
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEEEEEEE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeEEEEEE
Confidence            9999999999887766667788999999999999999999999999999997 222 22222       23457899999


Q ss_pred             cCCCCCEEE-EEECCCc------EEEEeCCCC
Q psy4653         151 NPKDNNTFA-SASLDRT------VKVWQLGSA  175 (229)
Q Consensus       151 ~~~~~~~l~-s~~~d~~------i~~wd~~~~  175 (229)
                      ++ +..+++ ++..|+.      +++|+++..
T Consensus       249 ~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          249 IG-TYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EE-TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ec-CceEEEEEccCCCccCCCCceEEEEeccC
Confidence            87 444443 3344533      899999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=2.4e-21  Score=169.74  Aligned_cols=205  Identities=7%  Similarity=0.025  Sum_probs=157.1

Q ss_pred             CCceEEEEEccCCCeEEEEEe-cC-----eEEEEEcCCCCeEEEEEecCc------------------------CeEEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLY-NG-----HVHVWNHETNQNVKSFEVCDL------------------------PVRAAK   64 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~-dg-----~v~~wd~~~~~~~~~~~~~~~------------------------~v~~~~   64 (229)
                      ...|.+++|+|||+.|++++. |+     .|.+||+.+++....+..+..                        .+.++.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999988 88     999999999987766654322                        278899


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcc--eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecce
Q psy4653          65 FVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT  142 (229)
Q Consensus        65 ~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~  142 (229)
                      |+|+|++|++++. +.|.+||++++.  .+..+..|...+.+++|+|+++.++.++ ++.|++||+..+.. ..+...+.
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EEeccCCc
Confidence            9999999999886 999999998873  4456667888899999999999998887 46999999987533 33322222


Q ss_pred             ee----------------EEEEEEcCCCCCEEEEEECCC---------------------------------cEEEEeCC
Q psy4653         143 HY----------------VMQIVINPKDNNTFASASLDR---------------------------------TVKVWQLG  173 (229)
Q Consensus       143 ~~----------------v~~~~~~~~~~~~l~s~~~d~---------------------------------~i~~wd~~  173 (229)
                      ..                +..+.|+| ++..|++++.|+                                 .|.+||+.
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             cceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            21                36689998 688888887665                                 78899998


Q ss_pred             C-CCceEEEe--cCCCceEEEEEEeCCCcCEEEEee-----CCCeEEEEECCCCeEEEeec
Q psy4653         174 S-ASPNFTLE--GHEKGVNCVDYYHGGDKPYLISGA-----DDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       174 ~-~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~~  226 (229)
                      + ++......  .|...+..++| +.+  ++|+.++     .+..|.+||+.++++...+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~  329 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH  329 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred             CCCceEEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence            7 76543332  36667888898 754  4566544     36789999999998766554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=3.2e-20  Score=148.39  Aligned_cols=208  Identities=12%  Similarity=0.059  Sum_probs=160.5

Q ss_pred             CceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcC---------eEEEEEcCCCCEEEEEe--CCCeEEE
Q psy4653          16 DRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLP---------VRAAKFVPRKNWIVTGS--DDMQVCV   83 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~sg~--~d~~i~i   83 (229)
                      ..+..++|+|+++.++++. .++.|.+||..+++.+..+......         ..++.|+|+++.+++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            4578899999999776655 5799999999999988877654321         68899999999777765  4788999


Q ss_pred             EECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee---cceeeEEEEEEcCCCCCEEE-
Q psy4653          84 FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE---GHTHYVMQIVINPKDNNTFA-  159 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~-  159 (229)
                      ||.++++.+..+..+...+.+++|+|+++.+++++.++.|.+||+...........   ++...+..+.++| ++..++ 
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~  247 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFI  247 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEE
Confidence            99999988888775666688999999999999999999999999987644333222   2455677889998 456554 


Q ss_pred             EEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         160 SASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +...++.|.+||..+++.+..+.....  ..++|.+  +++ ++++...++.|.+||..+++.+..++.+
T Consensus       248 ~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNP--ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSSC--CCEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECC--CCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence            444569999999998887777765432  4577754  444 4555557999999999999988877643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=7.4e-20  Score=146.30  Aligned_cols=208  Identities=8%  Similarity=-0.022  Sum_probs=160.0

Q ss_pred             CCceEEEEEccCCCeEEEEEe-------cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEEC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLY-------NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNY   86 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~-------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~   86 (229)
                      ...+..++|+|+++.+++++.       ++.|.+||..+++.+..+.... ....+.|+|+++.+ +++..++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            356889999999998888773       6789999999999888877543 47789999999955 55556789999999


Q ss_pred             CCcceEEEeccCCCc---------eeEEEEcCCCCEEEEEe--CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          87 NTLERFHSFEAHSDY---------VRCVAVHPTQPFLLTSS--DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~---------i~~v~~~~~~~~~~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      ++++.+..+..+...         ..+++|+|++..+++++  .++.|.+||+..... ...+..+...+..+.++| ++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~-dg  196 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDS-EG  196 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEET-TT
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECC-CC
Confidence            999887777654322         68899999999776665  578999999987643 344443444467788888 67


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceEEEec----CCCceEEEEEEeCCCcCEEEE-eeCCCeEEEEECCCCeEEEeecc
Q psy4653         156 NTFASASLDRTVKVWQLGSASPNFTLEG----HEKGVNCVDYYHGGDKPYLIS-GADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ..++.++.++.|.+||..+++....+..    +...+..++|.+  ++.+|+. ...++.|.+||..+++.+..++.
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT--ARQRAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET--TTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC--CCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            8888888899999999998887776654    444567788864  4444444 44569999999999998887754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=9.8e-20  Score=144.67  Aligned_cols=205  Identities=9%  Similarity=0.063  Sum_probs=152.4

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEe-cCeEEEEEcCCCCe-EEEEEecCcCeEEEEEcCCCCEEEEEeCCC---eEEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLY-NGHVHVWNHETNQN-VKSFEVCDLPVRAAKFVPRKNWIVTGSDDM---QVCVF   84 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~---~i~iw   84 (229)
                      .+..+...+ +++|+|+++.+++++. ++.|.+||..+++. ...+..+..+..++.|+|++++|+++..++   .|.+|
T Consensus        35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            334445566 9999999998877765 89999999999987 667666666666599999999998665553   89999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCc-EEEEecCCceee----eeeeecceeeEEEEEEcCCCCC-E
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDML-IKLWNWEKAWAC----QQVFEGHTHYVMQIVINPKDNN-T  157 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~-v~lwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~  157 (229)
                      |+++++.+..+..+ ....+++|+|++++++ +...++. |.+|++......    .... ........+.|+| ++. +
T Consensus       114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~sp-dg~~l  190 (331)
T 3u4y_A          114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTP-DGNFA  190 (331)
T ss_dssp             ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECT-TSSEE
T ss_pred             ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECC-CCCEE
Confidence            99998887776644 4568999999998554 5566688 999998753222    1112 2233467889998 566 4


Q ss_pred             EEEEECCCcEEEEeCCCCCc---eEEEecCCCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECCCCeE
Q psy4653         158 FASASLDRTVKVWQLGSASP---NFTLEGHEKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~  221 (229)
                      ++++..++.|++||+.+++.   +..+..+ ..+..++|.  +++++|+ +...++.|.+||..+++.
T Consensus       191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s--pdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          191 FVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVS--RDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEEC--TTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             EEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEEC--CCCCEEEEEEcCCCEEEEEECCCCce
Confidence            55566789999999998887   6666654 456778884  4566554 445688899999999877

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=7.9e-20  Score=144.97  Aligned_cols=203  Identities=11%  Similarity=0.063  Sum_probs=154.5

Q ss_pred             ceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecC-----cCeEEEEEcCCCCEEEEEe------------CC
Q psy4653          17 RVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCD-----LPVRAAKFVPRKNWIVTGS------------DD   78 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~------------~d   78 (229)
                      .+..++|+|+++.++++. .++.|.+||+.+++.+..+....     ..+..+.|+|+++.|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998776654 57899999999998877765422     2567899999999988886            57


Q ss_pred             CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee-------------------
Q psy4653          79 MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE-------------------  139 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-------------------  139 (229)
                      +.|.+||+++++.+..+.. ...+.+++|+|++++++++  ++.|.+||+...........                   
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            9999999998887776654 4567889999999988877  68999999876532211100                   


Q ss_pred             ----------------------------------------------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC
Q psy4653         140 ----------------------------------------------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG  173 (229)
Q Consensus       140 ----------------------------------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~  173 (229)
                                                                    .+...+..+.++| ++.+++++  ++.|.+||+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~  268 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLE  268 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECC
Confidence                                                          0111234578888 67777776  7899999999


Q ss_pred             CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       174 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +++.+..+..+ ..+.+++|.  +++++|++++.++.|++||+++++.+..++.+
T Consensus       269 ~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          269 KNASIKRVPLP-HSYYSVNVS--TDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTEEEEEEECS-SCCCEEEEC--TTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCcCcceecCC-CceeeEEEC--CCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            88777666643 346778884  45667888888999999999999998887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=6e-20  Score=146.01  Aligned_cols=209  Identities=12%  Similarity=0.117  Sum_probs=144.8

Q ss_pred             cCCCceEEEEEccCCCeEEEEEec-CeEEEEEcC--CCCe--EEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYN-GHVHVWNHE--TNQN--VKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNY   86 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~d-g~v~~wd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~   86 (229)
                      .|...+.+++|+|+++.|++++.+ +.|.+|++.  +++.  +..+.... .+..+.|+|++++|++++ .++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            467789999999999999998876 999999998  5553  33344333 788999999999776665 4889999999


Q ss_pred             C---CcceEEEeccCCCceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeee----eeec-ceeeEEEEEEcCCCCCE
Q psy4653          87 N---TLERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQ----VFEG-HTHYVMQIVINPKDNNT  157 (229)
Q Consensus        87 ~---~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~~  157 (229)
                      +   ..+.+..+..+ ..+.+++|+|+++++++++ .++.|++||+........    .... ....+..+.|+| ++.+
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~  191 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQY  191 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSE
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCE
Confidence            4   33444444433 4588999999999887776 899999999976222221    1121 234577899998 5665


Q ss_pred             E-EEEECCCcEEEEeCCC--CCc--eEEEe----cC--CCceEEEEEEeCCCcCEEE-EeeCCCeEEEEECC----CCeE
Q psy4653         158 F-ASASLDRTVKVWQLGS--ASP--NFTLE----GH--EKGVNCVDYYHGGDKPYLI-SGADDRLVKIWDYQ----NKTC  221 (229)
Q Consensus       158 l-~s~~~d~~i~~wd~~~--~~~--~~~~~----~h--~~~v~~~~~~~~~~~~~l~-s~s~d~~i~iwd~~----~~~~  221 (229)
                      + +++..++.|.+|++..  +..  ...+.    ++  ...+..++|.  +++.+|+ ++..|+.|++||++    +.+.
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s--~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~  269 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT--PDGRHLYACDRTASLITVFSVSEDGSVLSK  269 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC--CCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence            5 4555899999999953  322  22222    11  1235567774  4555555 66689999999998    3345


Q ss_pred             EEeec
Q psy4653         222 VQTLE  226 (229)
Q Consensus       222 ~~~~~  226 (229)
                      +..+.
T Consensus       270 ~~~~~  274 (343)
T 1ri6_A          270 EGFQP  274 (343)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            54443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=2.1e-21  Score=169.69  Aligned_cols=203  Identities=13%  Similarity=0.126  Sum_probs=153.5

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc---CeEEEEEcCCCCEEEEEeCC---------CeEEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL---PVRAAKFVPRKNWIVTGSDD---------MQVCV   83 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~sg~~d---------~~i~i   83 (229)
                      ..+.+++|+|+|+++++ +.||.|++||+.+++....+..+..   .+.++.|+|+|++|++++.+         +.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            35788999999997665 7899999999999988777665543   48999999999999999874         77889


Q ss_pred             EECCCcceEEEe---ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee----------------
Q psy4653          84 FNYNTLERFHSF---EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY----------------  144 (229)
Q Consensus        84 wd~~~~~~~~~~---~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~----------------  144 (229)
                      ||+++++. ..+   ..|...+..++|||+++.++.++. +.|++||+..+.. ..+...+...                
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEIL  172 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEec
Confidence            99988765 333   344455889999999999998876 7999999976533 3333332221                


Q ss_pred             --EEEEEEcCCCCCEEEEEECCC----------------------------------cEEEEeCCCCCceEEEecC----
Q psy4653         145 --VMQIVINPKDNNTFASASLDR----------------------------------TVKVWQLGSASPNFTLEGH----  184 (229)
Q Consensus       145 --v~~~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~~~h----  184 (229)
                        +..+.|+| ++..|++++.|.                                  .|++||+.+++....+..+    
T Consensus       173 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          173 KTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             cCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence              26789999 788888887553                                  7999999887765566554    


Q ss_pred             --CCceEEEEEEeCCCcCEEEEeeC----CCeEEEEECCCCeEEEee
Q psy4653         185 --EKGVNCVDYYHGGDKPYLISGAD----DRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       185 --~~~v~~~~~~~~~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~  225 (229)
                        ...+..++|+  +++++|++.+.    +..|++||+.++++...+
T Consensus       252 ~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~  296 (723)
T 1xfd_A          252 MREYYITMVKWA--TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (723)
T ss_dssp             GSSEEEEEEEES--SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             CccceeEEEEEe--CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence              4567788885  46667766543    367999999998876654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=2e-20  Score=163.91  Aligned_cols=203  Identities=11%  Similarity=0.088  Sum_probs=153.4

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      .|.+++|+||++.|++++. +.|.+||+.++.  ....+..+...+..+.|+|+|++|+.++ ++.|.+||+++++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            4889999999999998886 999999999882  3344555667899999999999999987 46899999998776554


Q ss_pred             eccCCCc----------------eeEEEEcCCCCEEEEEeCCC---------------------------------cEEE
Q psy4653          95 FEAHSDY----------------VRCVAVHPTQPFLLTSSDDM---------------------------------LIKL  125 (229)
Q Consensus        95 ~~~h~~~----------------i~~v~~~~~~~~~~s~~~d~---------------------------------~v~l  125 (229)
                      ...+...                +..++|+|+++.|+.++.|+                                 .|++
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            4434332                47899999999998887765                                 7889


Q ss_pred             EecCC-ceeeeeeee--cceeeEEEEEEcCCCCCEEEEEEC-----CCcEEEEeCCCCCceEEEecCCC----ceEEEEE
Q psy4653         126 WNWEK-AWACQQVFE--GHTHYVMQIVINPKDNNTFASASL-----DRTVKVWQLGSASPNFTLEGHEK----GVNCVDY  193 (229)
Q Consensus       126 wd~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~  193 (229)
                      ||+.. ... ..+..  .|...+..+.| | ++..|+.++.     +..|++||+.+++....+..+..    .+..++|
T Consensus       268 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          268 ISPAEQAQT-QWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             ECSSTTCCC-EEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             EECCCCCce-EEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            99876 532 33322  47778999999 8 6788886653     56899999998877666655543    3456777


Q ss_pred             EeCCCcCEEEEeeCCCeEEEEECC-CCeEEEeecc
Q psy4653         194 YHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLES  227 (229)
Q Consensus       194 ~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~  227 (229)
                      .  ++++++++++.||.++||.+. .++ ...++.
T Consensus       345 s--pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~  376 (741)
T 2ecf_A          345 L--DDGSILWSSERTGFQHLYRIDSKGK-AAALTH  376 (741)
T ss_dssp             C--TTSCEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred             C--CCCeEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence            4  455688999999988888875 344 555554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=3.7e-19  Score=141.41  Aligned_cols=199  Identities=14%  Similarity=0.235  Sum_probs=137.3

Q ss_pred             ceEEEEEccCCCeEEEEEe-cCeEEEEEcCCC---CeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-cc
Q psy4653          17 RVKCCDLHPTEPWMLASLY-NGHVHVWNHETN---QNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNYNT-LE   90 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~-~~   90 (229)
                      .+.+++|+|+++.+++++. ++.|.+||+.++   +.+..+.. ...+.++.|+|++++|++++ .++.|.+||+++ ++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            7899999999998887765 889999999533   33333332 34588899999999888777 899999999987 54


Q ss_pred             eEE----EeccC-CCceeEEEEcCCCCEEEEE-eCCCcEEEEecCC--cee-eeeeee----cc--eeeEEEEEEcCCCC
Q psy4653          91 RFH----SFEAH-SDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEK--AWA-CQQVFE----GH--THYVMQIVINPKDN  155 (229)
Q Consensus        91 ~~~----~~~~h-~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~--~~~-~~~~~~----~~--~~~v~~~~~~~~~~  155 (229)
                      ...    .+..+ ...+.+++|+|++++++.+ ..++.|.+|++..  +.. ......    ++  ...+..+.|+| ++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg  242 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DG  242 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CC
Confidence            321    22222 3468899999999976544 5789999999953  211 111111    11  23456789998 56


Q ss_pred             CEEE-EEECCCcEEEEeCCC--C--CceEEEecCCCceEEEEEEeCCCcCEEEEee-CCCeEEEEEC--CCCe
Q psy4653         156 NTFA-SASLDRTVKVWQLGS--A--SPNFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDY--QNKT  220 (229)
Q Consensus       156 ~~l~-s~~~d~~i~~wd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~--~~~~  220 (229)
                      .+++ ++..++.|.+||+..  +  +.+..+..+.. +..++|.  +++.+|++++ .|+.|.+|++  ++++
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s--~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD--HSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC--TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC--CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            5555 666899999999973  2  23334444443 7778884  4556666666 6899999954  4653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=2.1e-18  Score=137.00  Aligned_cols=202  Identities=10%  Similarity=0.087  Sum_probs=143.5

Q ss_pred             EEEccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCcce-EEEecc
Q psy4653          21 CDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQVCVFNYNTLER-FHSFEA   97 (229)
Q Consensus        21 ~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~-~~~~~~   97 (229)
                      +.|.+++..+++ ...++.|.+||..+++.+..+.....+. .+.|+|++++|++++. ++.|.+||.++++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            456777666554 5678999999999999988777655556 9999999996665555 88999999998887 666766


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCC---cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc-EEEEeCC
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDM---LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT-VKVWQLG  173 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~---~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~  173 (229)
                      +.....+++|+|++++++++..++   .|.+||+..... ...+..+ .....+.|+|....+++++..++. |.+|++.
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence            666666699999999988555553   899999987644 3333332 335789999943346666677788 9999987


Q ss_pred             CCCceE----EEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCCeE---EEeecc
Q psy4653         174 SASPNF----TLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNKTC---VQTLES  227 (229)
Q Consensus       174 ~~~~~~----~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~---~~~~~~  227 (229)
                      ....+.    ...........++|.  ++++ +++++..++.|++||+++++.   +.+++.
T Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~  219 (331)
T 3u4y_A          160 ADGVLFDTGQEFISGGTRPFNITFT--PDGNFAFVANLIGNSIGILETQNPENITLLNAVGT  219 (331)
T ss_dssp             TTCCEEEEEEEEECSSSSEEEEEEC--TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             CCCcEeecCCccccCCCCccceEEC--CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC
Confidence            544332    112233457778884  4555 455566799999999998887   766653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=2.1e-18  Score=138.11  Aligned_cols=209  Identities=9%  Similarity=0.072  Sum_probs=143.4

Q ss_pred             cccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCC-CCe--EEEEEec---------CcCeEEEEEcCCCCEEEEEeC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHET-NQN--VKSFEVC---------DLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~-~~~--~~~~~~~---------~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      +..+...+..++|+|+++.|++++ .++.|.+|++.. +..  +..+...         ...+.++.|+|+++++++...
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~  160 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG  160 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC
Confidence            345677889999999999998887 689999999963 332  2222211         123788999999997777777


Q ss_pred             CCeEEEEECC-CcceE--EEeccC-CCceeEEEEcCCCCEEE-EEeCCCcEEEEecCC--cee-eeeeeecce------e
Q psy4653          78 DMQVCVFNYN-TLERF--HSFEAH-SDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEK--AWA-CQQVFEGHT------H  143 (229)
Q Consensus        78 d~~i~iwd~~-~~~~~--~~~~~h-~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~--~~~-~~~~~~~~~------~  143 (229)
                      ++.|.+|+++ +++..  ..+..+ ......++|+|++++++ +...++.|.+|+++.  +.. .........      .
T Consensus       161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            8899999998 44322  222222 23578899999999655 456789999999864  211 111221111      3


Q ss_pred             eEEEEEEcCCCCCEE-EEEECCCcEEEEeCCCC---CceEEEecCCCceEEEEEEeCCCcCEEEEeeC-CCeEEEE--EC
Q psy4653         144 YVMQIVINPKDNNTF-ASASLDRTVKVWQLGSA---SPNFTLEGHEKGVNCVDYYHGGDKPYLISGAD-DRLVKIW--DY  216 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d~~i~iw--d~  216 (229)
                      .+..+.|+| ++.++ +++..++.|.+|++...   ..+..+..+...+..++|  ++++++|++++. ++.|.+|  |.
T Consensus       241 ~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~--spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          241 GAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL--DPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE--CTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE--CCCCCEEEEEEcCCCcEEEEEEeC
Confidence            477899998 57755 66778999999998632   344455555556778888  456667777665 5999999  55


Q ss_pred             CCCeEE
Q psy4653         217 QNKTCV  222 (229)
Q Consensus       217 ~~~~~~  222 (229)
                      ++++..
T Consensus       318 ~tg~l~  323 (347)
T 3hfq_A          318 TSGKLS  323 (347)
T ss_dssp             TTCCEE
T ss_pred             CCCeEE
Confidence            566544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.1e-19  Score=158.58  Aligned_cols=208  Identities=9%  Similarity=0.082  Sum_probs=152.9

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----cc
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-----LE   90 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-----~~   90 (229)
                      ..|.+++|+|+ ..++.+ .++.|.+||+.+++.... ..+...+.++.|+|+|+.|+.+ .|+.|.+||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            57999999999 666655 469999999998866444 3445578889999999999985 689999999988     76


Q ss_pred             eEEEeccCCCc--------------eeEEEEcCCCCEEEEEe---------------------------------CCCcE
Q psy4653          91 RFHSFEAHSDY--------------VRCVAVHPTQPFLLTSS---------------------------------DDMLI  123 (229)
Q Consensus        91 ~~~~~~~h~~~--------------i~~v~~~~~~~~~~s~~---------------------------------~d~~v  123 (229)
                      .......+...              +.++.|+|++++|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            65544433332              48999999999999887                                 45789


Q ss_pred             EEEecCCceeeeeee-ecceeeEEEEEEcCCCCCEEEEEECCC-----cEEEEeCCCCCceEEEe--cCCC---ceEEEE
Q psy4653         124 KLWNWEKAWACQQVF-EGHTHYVMQIVINPKDNNTFASASLDR-----TVKVWQLGSASPNFTLE--GHEK---GVNCVD  192 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~--~h~~---~v~~~~  192 (229)
                      ++||+..+....... ..|...+..+.|+| ++..+++++.|+     .|++||+.+++....+.  .+..   .+..+.
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence            999998764322211 24667789999998 688888887776     99999998874333332  2221   235667


Q ss_pred             EEeCCCcCEEEEeeCCCeEEEEECC-CCeEEEeeccC
Q psy4653         193 YYHGGDKPYLISGADDRLVKIWDYQ-NKTCVQTLESG  228 (229)
Q Consensus       193 ~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~  228 (229)
                      |.+..++.+|++++.|+.++||+++ +++.+..++.+
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~  353 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG  353 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence            7431155688999999999999986 56666766543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=5.5e-19  Score=140.90  Aligned_cols=203  Identities=11%  Similarity=0.037  Sum_probs=146.5

Q ss_pred             ceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecC------cCeEEEEEcCCCCEEEEEeCC-----------
Q psy4653          17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCD------LPVRAAKFVPRKNWIVTGSDD-----------   78 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~sg~~d-----------   78 (229)
                      .+..++|+|+++.++++ ..++.|.+||+.+++.+..+....      ..+..+.|+|++++|++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            57899999999877655 468999999999998877665432      237889999999999998865           


Q ss_pred             -CeEEEEECCCcce---EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-------------
Q psy4653          79 -MQVCVFNYNTLER---FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-------------  141 (229)
Q Consensus        79 -~~i~iwd~~~~~~---~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-------------  141 (229)
                       +.|.+||+++++.   +..+. +...+.+++|+|+++ +++++.  .|.+||+...........+.             
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence             8999999987543   33333 334688999999999 555543  49999987653322211110             


Q ss_pred             ------------------------------------------------------eeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653         142 ------------------------------------------------------THYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus       142 ------------------------------------------------------~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                                                                            ...+..+.++|.++.+++++  ++.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v  277 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL  277 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence                                                                  00233455666356777766  8899


Q ss_pred             EEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .+||+.+++.+..+... ..+.+++|.  +++.+|++++.++.|++||.++++.+.+++.+
T Consensus       278 ~~~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          278 AKYDLKQRKLIKAANLD-HTYYCVAFD--KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEETTTTEEEEEEECS-SCCCEEEEC--SSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEECccCeEEEEEcCC-CCccceEEC--CCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            99999988776666543 346678884  45556777888899999999999998887643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=2.4e-19  Score=139.24  Aligned_cols=194  Identities=11%  Similarity=0.040  Sum_probs=141.0

Q ss_pred             cccC-CCceEEEEEccCCCeEEEEEe--cCeEEE--EEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEE
Q psy4653          11 LTAR-SDRVKCCDLHPTEPWMLASLY--NGHVHV--WNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVF   84 (229)
Q Consensus        11 ~~~~-~~~v~~~~~~p~~~~l~~~~~--dg~v~~--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iw   84 (229)
                      +.+| ...|.+++|+|+++.+++++.  ++...+  |+..+++. ..+... ..+..+.|+|+++.|+ +++.++.+.+|
T Consensus        79 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~  156 (297)
T 2ojh_A           79 DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIY  156 (297)
T ss_dssp             CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEE
Confidence            3344 367899999999999999983  344444  55555553 333322 3588899999999877 78889999999


Q ss_pred             ECCC-cceEEEeccCCCceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          85 NYNT-LERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        85 d~~~-~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      +++. ......+..+...+.+++|+|+++.++.++ .++.+++|++.........+..|...+..+.|+| ++.+|++++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~  235 (297)
T 2ojh_A          157 SMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVS  235 (297)
T ss_dssp             EEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEE
T ss_pred             EEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEE
Confidence            8532 234456667788899999999999877665 5899999998633233455566777888999998 678888777


Q ss_pred             CC-----------CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCC
Q psy4653         163 LD-----------RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDR  209 (229)
Q Consensus       163 ~d-----------~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~  209 (229)
                      .+           ..|.+||+.+++.  +..+.+|...+.+++|.  +++.+|++++.|.
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~  293 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS--PDGDEFAYVRYFP  293 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC--TTSSEEEEEEECC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC--CCCCEEEEEEecc
Confidence            65           5699999987765  34445777788888884  4566777766553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=6.3e-19  Score=160.15  Aligned_cols=206  Identities=11%  Similarity=0.094  Sum_probs=162.2

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-----------cCcCeEEEEEc-CCCCEEEEEeC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV-----------CDLPVRAAKFV-PRKNWIVTGSD   77 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~sg~~   77 (229)
                      .+..|. .+.+.+|+|+++.++.+ .++.|.+||+.+.+. ..+..           +...+.++.|+ |+|+.|++++ 
T Consensus       240 ~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-  315 (1045)
T 1k32_A          240 KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-  315 (1045)
T ss_dssp             ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-
T ss_pred             EecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-
Confidence            345554 57788999999988887 599999999955443 33332           22358899999 9999998887 


Q ss_pred             CCeEEEEECCCcceEEEeccCCC-ceeEEEEcCCCCEEEEEeCCCcEE-EEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIK-LWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~~-~i~~v~~~~~~~~~~s~~~d~~v~-lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      ++.|.+|+...++.. .+..|.. .+..++|+ +++.++.++.+..+. +||+.... ...+. +|...+..+.|+| ++
T Consensus       316 ~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~~~l~-~~~~~~~~~~~Sp-DG  390 (1045)
T 1k32_A          316 RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-AEKFE-ENLGNVFAMGVDR-NG  390 (1045)
T ss_dssp             TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-EEECC-CCCCSEEEEEECT-TS
T ss_pred             cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-ceEec-CCccceeeeEECC-CC
Confidence            889999999876643 4566777 89999999 999999888888888 89987653 23333 6777889999998 78


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC----------eEEEEECCCCeEEEee
Q psy4653         156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR----------LVKIWDYQNKTCVQTL  225 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~----------~i~iwd~~~~~~~~~~  225 (229)
                      ..|++++.++.|++||+.+++......+|...+.+++|+  +++++|++++.++          .|++||+.+++ +..+
T Consensus       391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S--pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l  467 (1045)
T 1k32_A          391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS--DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA  467 (1045)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC--TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC
T ss_pred             CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC--CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe
Confidence            999999999999999999888777777888888889984  5667788777654          89999999887 4554


Q ss_pred             cc
Q psy4653         226 ES  227 (229)
Q Consensus       226 ~~  227 (229)
                      ..
T Consensus       468 ~~  469 (1045)
T 1k32_A          468 TT  469 (1045)
T ss_dssp             SC
T ss_pred             eC
Confidence            43

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=8.8e-18  Score=134.45  Aligned_cols=210  Identities=10%  Similarity=0.151  Sum_probs=142.1

Q ss_pred             cCCCceEEEEEccCCCeEEEEEe---cCeEEEEEcCCCCe--EEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLY---NGHVHVWNHETNQN--VKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNY   86 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~   86 (229)
                      .+......++|+|+++ |++++.   ++.|.+||+.+++.  +..+..+...+..+.|+|++++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            4456788899999999 666654   68999999987653  333344566788999999999888887 6789999998


Q ss_pred             CC-c--ceEEEecc---------CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee--eeecc-eeeEEEEEEc
Q psy4653          87 NT-L--ERFHSFEA---------HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ--VFEGH-THYVMQIVIN  151 (229)
Q Consensus        87 ~~-~--~~~~~~~~---------h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~--~~~~~-~~~v~~~~~~  151 (229)
                      .. +  +.+..+..         +...+.+++|+|+++++++...++.|.+|++........  .+..+ ...+..+.|+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            63 2  23333321         122478999999999666777789999999973222211  11111 2245678999


Q ss_pred             CCCCC-EEEEEECCCcEEEEeCCC--CCc--eEEEecCC------CceEEEEEEeCCCcCEE-EEeeCCCeEEEEECC--
Q psy4653         152 PKDNN-TFASASLDRTVKVWQLGS--ASP--NFTLEGHE------KGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQ--  217 (229)
Q Consensus       152 ~~~~~-~l~s~~~d~~i~~wd~~~--~~~--~~~~~~h~------~~v~~~~~~~~~~~~~l-~s~s~d~~i~iwd~~--  217 (229)
                      | ++. +++++..++.|.+|++..  ++.  +..+....      ..+..++|.  +++++| ++...++.|.+|++.  
T Consensus       196 p-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s--pdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          196 P-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS--HDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC--TTSCEEEEEEETTTEEEEEEECGG
T ss_pred             C-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC--CCCCEEEEEeCCCCEEEEEEECCC
Confidence            8 577 455566789999999874  322  22333222      236778884  456655 566779999999997  


Q ss_pred             -CCeEEEeec
Q psy4653         218 -NKTCVQTLE  226 (229)
Q Consensus       218 -~~~~~~~~~  226 (229)
                       +.+.+..+.
T Consensus       273 g~~~~~~~~~  282 (347)
T 3hfq_A          273 GHLTLIQQIS  282 (347)
T ss_dssp             GCEEEEEEEE
T ss_pred             CcEEEeEEEe
Confidence             234555544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.8e-18  Score=147.83  Aligned_cols=200  Identities=14%  Similarity=0.067  Sum_probs=142.6

Q ss_pred             CCceEEEEEccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC---CCeEEEEECCC-
Q psy4653          15 SDRVKCCDLHPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD---DMQVCVFNYNT-   88 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~---d~~i~iwd~~~-   88 (229)
                      ..+|.+++|+|||+.|+.++. ||++.||++.+++..+ +..+. ..+..+.|+|+ +++++++.   +....+|.++. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999876 9999999997665544 33344 47899999998 78887765   44556655432 


Q ss_pred             --cceEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-
Q psy4653          89 --LERFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-  164 (229)
Q Consensus        89 --~~~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-  164 (229)
                        +... .+... ..+...+|+|+++. +++++.++.+.+||+..+. ...+...+.   ..+.|+| ++..+++++.| 
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~~~l~~~~~---~~~~~sp-DG~~la~~~~~~  171 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-LRELARLPG---FGFVSDI-RGDLIAGLGFFG  171 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-EEEEEEESS---CEEEEEE-ETTEEEEEEEEE
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-EEEeecCCC---ceEEECC-CCCEEEEEEEcC
Confidence              2222 33222 23446688888763 3444445555699997663 333333222   6788998 78999988877 


Q ss_pred             ---CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCC--eEEEEECCCCeEEEeecc
Q psy4653         165 ---RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       165 ---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~  227 (229)
                         ..|++||+.+++.. .+..|...+...+|  +++++.|+++..++  .|++||+.+++.. .++.
T Consensus       172 ~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGGLR-VFDSGEGSFSSASI--SPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             TTEEEEEEEETTTCCCE-EECCSSCEEEEEEE--CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred             CCCeEEEEEcCCCCCce-EeecCCCccccceE--CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence               78999999877654 67788888888888  45677888888888  8999999998876 5543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=8e-19  Score=153.34  Aligned_cols=205  Identities=8%  Similarity=0.014  Sum_probs=143.7

Q ss_pred             hcccCCC---ceEEEEEccCCCeEEEEEec---------CeEEEEEcCCCCeEEEEEe---cCcCeEEEEEcCCCCEEEE
Q psy4653          10 KLTARSD---RVKCCDLHPTEPWMLASLYN---------GHVHVWNHETNQNVKSFEV---CDLPVRAAKFVPRKNWIVT   74 (229)
Q Consensus        10 ~~~~~~~---~v~~~~~~p~~~~l~~~~~d---------g~v~~wd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s   74 (229)
                      .+.+|..   .|.+++|||||+.|++++.+         +.+.+||+.+++. ..+..   +...+..+.|+|+|+.|+.
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence            3444543   49999999999999998764         7889999999876 33322   2234788999999999999


Q ss_pred             EeCCCeEEEEECCCcceEEEeccCCCce------------------eEEEEcCCCCEEEEEeCCC---------------
Q psy4653          75 GSDDMQVCVFNYNTLERFHSFEAHSDYV------------------RCVAVHPTQPFLLTSSDDM---------------  121 (229)
Q Consensus        75 g~~d~~i~iwd~~~~~~~~~~~~h~~~i------------------~~v~~~~~~~~~~s~~~d~---------------  121 (229)
                      ++. +.|.+||..+++.......+...+                  .+++|+|+++.|+.++.|+               
T Consensus       131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            876 789999998887665555443333                  7899999999998887543               


Q ss_pred             -------------------cEEEEecCCceeeeeeeec------ceeeEEEEEEcCCCCCEEEEEEC----CCcEEEEeC
Q psy4653         122 -------------------LIKLWNWEKAWACQQVFEG------HTHYVMQIVINPKDNNTFASASL----DRTVKVWQL  172 (229)
Q Consensus       122 -------------------~v~lwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~  172 (229)
                                         .|++||+..... ...+..      +...+..+.|+| ++.++++.+.    +..|++||+
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEET
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeC
Confidence                               789999876542 222332      356789999999 6777766643    358999999


Q ss_pred             CCCCceEEEecC-CCceE----EEEEEeCCCcCEEEE--eeCCC------eEEEEE-CCCCe
Q psy4653         173 GSASPNFTLEGH-EKGVN----CVDYYHGGDKPYLIS--GADDR------LVKIWD-YQNKT  220 (229)
Q Consensus       173 ~~~~~~~~~~~h-~~~v~----~~~~~~~~~~~~l~s--~s~d~------~i~iwd-~~~~~  220 (229)
                      .+++....+..+ ...+.    .++|++  +++.|+.  +..|+      .|.+|| ..+++
T Consensus       288 ~~g~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          288 TTGVCTKKHEDESEAWLHRQNEEPVFSK--DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECT--TSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             CCCcceEEEEeccCCEEeccCCCceEcC--CCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            888766555433 33332    567744  5554443  55677      566677 34443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=6.6e-18  Score=134.61  Aligned_cols=157  Identities=13%  Similarity=0.154  Sum_probs=117.6

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccC
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAH   98 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h   98 (229)
                      +++++++..+++++.++.|.+||+.+++.+..+.... .....+.|+|+++.+ +++..++.|.+||+++++.+..+..+
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            4678888889999999999999999998888776543 257889999999865 55567899999999998877666532


Q ss_pred             C------CceeEEEEcCCCCEEEEEeCC------------CcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEE
Q psy4653          99 S------DYVRCVAVHPTQPFLLTSSDD------------MLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        99 ~------~~i~~v~~~~~~~~~~s~~~d------------~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      .      ..+.+++|+|+++++++++.+            +.|.+||+..+...  ...+.. ...+..+.|+| ++.++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~l~  162 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD-DGSLY  162 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT-TSCEE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECC-CCcEE
Confidence            2      237899999999999888765            89999999764221  222322 23467788998 56644


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEe
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLE  182 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~  182 (229)
                      + ++  +.|.+||..+++....+.
T Consensus       163 ~-~~--~~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          163 V-AG--PDIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             E-ES--SSEEEECTTTCCEEEEEC
T ss_pred             E-cc--CcEEEEeCCCCceecccc
Confidence            4 43  349999998877666554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=4e-18  Score=148.65  Aligned_cols=198  Identities=12%  Similarity=0.095  Sum_probs=141.1

Q ss_pred             eEEEEEccCCCeEEEEE---------------------------------ecCeEEEEEcCCCCeEEEEE--ecCcCeEE
Q psy4653          18 VKCCDLHPTEPWMLASL---------------------------------YNGHVHVWNHETNQNVKSFE--VCDLPVRA   62 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~---------------------------------~dg~v~~wd~~~~~~~~~~~--~~~~~v~~   62 (229)
                      +.+++|+||++.|++++                                 .+..|.+||+.+++......  .+...+.+
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            68999999999999987                                 34689999999987654432  23456899


Q ss_pred             EEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEEec--cCCC---ceeEEEEcC--CCCEEEEEeCCCcEEEEecCC
Q psy4653          63 AKFVPRKNWIVTGSDDM-----QVCVFNYNTLERFHSFE--AHSD---YVRCVAVHP--TQPFLLTSSDDMLIKLWNWEK  130 (229)
Q Consensus        63 ~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~--~h~~---~i~~v~~~~--~~~~~~s~~~d~~v~lwd~~~  130 (229)
                      +.|+|+|+.|++++.++     .|.+||+++++....+.  .+..   .+..+.|+|  +++++++++.|+.++||+++.
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~  342 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT  342 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence            99999999999887775     89999999884433332  2222   246789999  999999999999999998763


Q ss_pred             ceeeeeeeecceeeEEE-EEEcCCCCCEEE-EEECCC----cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEE
Q psy4653         131 AWACQQVFEGHTHYVMQ-IVINPKDNNTFA-SASLDR----TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLIS  204 (229)
Q Consensus       131 ~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~-s~~~d~----~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  204 (229)
                      .......+..+...+.. +.|+| ++..++ +++.++    .|..||+.++. ...+. |...+.+++|+  +++++|+.
T Consensus       343 ~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s--pdg~~l~~  417 (706)
T 2z3z_A          343 TGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLS--PDGSAIID  417 (706)
T ss_dssp             TSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEEC--TTSSEEEE
T ss_pred             CCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEEC--CCCCEEEE
Confidence            22334445556666766 78998 566555 444554    56666776654 33333 56678888884  45555655


Q ss_pred             e-eCC---CeEEEEECCCCe
Q psy4653         205 G-ADD---RLVKIWDYQNKT  220 (229)
Q Consensus       205 ~-s~d---~~i~iwd~~~~~  220 (229)
                      . +.+   +.|.+||..+++
T Consensus       418 ~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          418 IFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEECSSCSCEEEEEESSSCE
T ss_pred             EecCCCCCcEEEEEECCCCe
Confidence            4 433   569999999887

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=8.9e-19  Score=159.18  Aligned_cols=198  Identities=12%  Similarity=0.049  Sum_probs=161.5

Q ss_pred             CCCceEEEEEc-cCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc-CeEEEEEcCCCCEEEEEeCCCeEE-EEECCCcc
Q psy4653          14 RSDRVKCCDLH-PTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL-PVRAAKFVPRKNWIVTGSDDMQVC-VFNYNTLE   90 (229)
Q Consensus        14 ~~~~v~~~~~~-p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~d~~i~-iwd~~~~~   90 (229)
                      |...|.+++|+ |+++.+++++ ++.|.+|+..+++... +..+.. .+..+.|+ +++.|+.++.++.+. +||.++++
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            45579999999 9999998887 8999999999876543 344444 78999999 999999998888888 99998765


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC-----
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR-----  165 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----  165 (229)
                      .. .+..|...+..++|+|+++.+++++.++.|++||+..+ ....+..+|...+..+.|+| ++.+|++++.++     
T Consensus       371 ~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~  447 (1045)
T 1k32_A          371 AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETD  447 (1045)
T ss_dssp             EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTC
T ss_pred             ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECC-CCCeEEEEecCcccccc
Confidence            53 44477788999999999999999999999999999866 34555567888889999998 688888877654     


Q ss_pred             -----cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         166 -----TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       166 -----~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                           .|++||+.+++ ...+..|...+..++|  ++++++|+.++.++..++|+.....
T Consensus       448 ~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~--spdG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          448 GYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF--DADSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             SCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE--CTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             CCCCCeEEEEECCCCc-EEEeeCCCcccCCceE--cCCCCEEEEEecccCCcCcchhccc
Confidence                 99999998776 6667778777888888  4566789999998888888876443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=1.3e-17  Score=132.15  Aligned_cols=191  Identities=12%  Similarity=0.086  Sum_probs=139.2

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEEecCc--CeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccC-----C
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFEVCDL--PVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAH-----S   99 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h-----~   99 (229)
                      +++++++.++.|.+||+.+++.+..+.....  .+..+.|+|+++.+ +++..++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4688889999999999999988887764432  47889999999865 55666789999999998877665432     1


Q ss_pred             CceeEEEEcCCCCEEEEEe------------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653         100 DYVRCVAVHPTQPFLLTSS------------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus       100 ~~i~~v~~~~~~~~~~s~~------------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ..+..++|+|+++++++++            .++.|.+||+...... ..+.. ...+..+.|+| ++.+++.+  ++.|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-KAFEA-PRQITMLAWAR-DGSKLYGL--GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-EEEEC-CSSCCCEEECT-TSSCEEEE--SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE-EEEeC-CCCcceeEECC-CCCEEEEe--CCeE
Confidence            2577899999999888775            5799999999776433 33332 23456778998 56666665  6889


Q ss_pred             EEEeCCCCCceEEEecCC--------------------------------------------------------------
Q psy4653         168 KVWQLGSASPNFTLEGHE--------------------------------------------------------------  185 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~--------------------------------------------------------------  185 (229)
                      .+||+.+++....+..+.                                                              
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  236 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence            999998765444332211                                                              


Q ss_pred             ----CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         186 ----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       186 ----~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                          ..+..++|  ++++.+|+++  ++.|.+||+++++.+..+..
T Consensus       237 ~~~~~~~~~~~~--s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~  278 (337)
T 1pby_B          237 RIMDVFYFSTAV--NPAKTRAFGA--YNVLESFDLEKNASIKRVPL  278 (337)
T ss_dssp             EECSSCEEEEEE--CTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCceeeEEE--CCCCCEEEEe--CCeEEEEECCCCcCcceecC
Confidence                12234555  4456677776  78999999999988877653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=158.31  Aligned_cols=199  Identities=13%  Similarity=0.149  Sum_probs=144.4

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc---CeEEEEEcCCCCEEEEEeC---------CCeEEEEEC
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL---PVRAAKFVPRKNWIVTGSD---------DMQVCVFNY   86 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~sg~~---------d~~i~iwd~   86 (229)
                      ..++|+|++. +++.+.|+.|++||+.+++....+..+..   .+.++.|+|+|++|+.++.         ++.|.+||+
T Consensus        19 ~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            4789999995 55555799999999999988766654432   4899999999999998876         789999999


Q ss_pred             CCcceE--EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE-----------------EE
Q psy4653          87 NTLERF--HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----------------MQ  147 (229)
Q Consensus        87 ~~~~~~--~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-----------------~~  147 (229)
                      ++++.+  ..+   ...+..++|||+|+.++.+. ++.|++||+..+........++...+                 ..
T Consensus        98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            988663  222   24688999999999998875 78999999976543222223332222                 37


Q ss_pred             EEEcCCCCCEEEEEECCC----------------------------------cEEEEeCCCCCce--EE------EecCC
Q psy4653         148 IVINPKDNNTFASASLDR----------------------------------TVKVWQLGSASPN--FT------LEGHE  185 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~--~~------~~~h~  185 (229)
                      +.|+| |+..|++++.|.                                  .|++||+.+++..  ..      +.+|.
T Consensus       174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            89999 788999887652                                  7889999876542  11      23577


Q ss_pred             CceEEEEEEeCCCcCEEEEeeCC----CeEEEEE----CCCCeEEEee
Q psy4653         186 KGVNCVDYYHGGDKPYLISGADD----RLVKIWD----YQNKTCVQTL  225 (229)
Q Consensus       186 ~~v~~~~~~~~~~~~~l~s~s~d----~~i~iwd----~~~~~~~~~~  225 (229)
                      ..+..++|++  ++.++++....    ..|.+||    ..++++...+
T Consensus       253 ~~~~~~~~Sp--D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          253 YYFSWLTWVT--DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             EEEEEEEESS--SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             ceEEEeEEeC--CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence            7788889854  45566664432    3488899    8777765444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=8.1e-18  Score=143.86  Aligned_cols=199  Identities=13%  Similarity=0.046  Sum_probs=142.5

Q ss_pred             hcccCC-CceEEEEEccCCCeEEEEEe---cCeEEEEEcCC---CCeEEEEEecCcCeEEEEEcCCCC--EEEEEeCCCe
Q psy4653          10 KLTARS-DRVKCCDLHPTEPWMLASLY---NGHVHVWNHET---NQNVKSFEVCDLPVRAAKFVPRKN--WIVTGSDDMQ   80 (229)
Q Consensus        10 ~~~~~~-~~v~~~~~~p~~~~l~~~~~---dg~v~~wd~~~---~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~d~~   80 (229)
                      .+..|. ..|.++.|+|+ +.++++..   +....+|.+..   +... .+.. ........|+|+++  .+++++.+ .
T Consensus        58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~-~  133 (582)
T 3o4h_A           58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATED-R  133 (582)
T ss_dssp             ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSS-C
T ss_pred             eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCC-C
Confidence            345555 58999999999 77776664   45556655433   2222 2221 22345667888875  34444444 4


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (229)
                      +.+||+++++.......+ .  .+++|+|+|+.+++++.+    +.|++||+..+..  ..+..|...+..+.|+| |+.
T Consensus       134 ~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~Sp-DG~  207 (582)
T 3o4h_A          134 VALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISP-GMK  207 (582)
T ss_dssp             EEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECT-TSC
T ss_pred             ceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECC-CCC
Confidence            559999887654444333 3  789999999999988777    7899999876532  34567778889999999 788


Q ss_pred             EEEEEECCC--cEEEEeCCCCCceEEEecCCCceEEEE--------EEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         157 TFASASLDR--TVKVWQLGSASPNFTLEGHEKGVNCVD--------YYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       157 ~l~s~~~d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      .|+++..++  .|++||+.+++.. .+.+|...+..++        |+  +++.++++++.|+.++||++  ++++.
T Consensus       208 ~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s--pdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          208 VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYL--PDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEEC--TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEc--CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence            999888888  8999999888776 6677766666555        74  45578999999999999999  76654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=1.6e-17  Score=146.04  Aligned_cols=200  Identities=11%  Similarity=0.106  Sum_probs=144.9

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC-----eEEEEEcCCCCEEEEEeCC---------C
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----VRAAKFVPRKNWIVTGSDD---------M   79 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~sg~~d---------~   79 (229)
                      +.....++.|+|++.+++++  ||.|++||+.+++....+..+...     ...+.|+|+|+.|+.++.+         +
T Consensus        15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             SCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            34457789999999888776  999999999999987776655422     2347899999999998876         5


Q ss_pred             eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE--------------
Q psy4653          80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV--------------  145 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v--------------  145 (229)
                      .+.+||+++++. ..+..|...+...+|||+|+.++.+. |+.|++||+..+........++...+              
T Consensus        93 ~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            667999998765 44666778899999999999988774 68999999876543332333332222              


Q ss_pred             ---EEEEEcCCCCCEEEEEECCC------------------------------------cEEEEeCCC---CC--ceEEE
Q psy4653         146 ---MQIVINPKDNNTFASASLDR------------------------------------TVKVWQLGS---AS--PNFTL  181 (229)
Q Consensus       146 ---~~~~~~~~~~~~l~s~~~d~------------------------------------~i~~wd~~~---~~--~~~~~  181 (229)
                         ..+.|+| |+..|+.++.|.                                    +|++||+.+   +.  ....+
T Consensus       171 ~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          171 SAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             CCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence               2478999 788888876332                                    478888877   63  23344


Q ss_pred             e------cCCCceEEEEEEeCCCcCEEEEee----CCCeEEEEECCCCe
Q psy4653         182 E------GHEKGVNCVDYYHGGDKPYLISGA----DDRLVKIWDYQNKT  220 (229)
Q Consensus       182 ~------~h~~~v~~~~~~~~~~~~~l~s~s----~d~~i~iwd~~~~~  220 (229)
                      .      +|...+..++|++.  ++.++...    .+..|.+||+.+++
T Consensus       250 ~~~~~~~~~~~~~~~~~wspd--g~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQ--ERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEET--TEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCCccCCCCCeEEEEEEEeCC--CeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            3      26667888999764  44444432    34479999998887

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=7.7e-16  Score=123.83  Aligned_cols=199  Identities=12%  Similarity=0.081  Sum_probs=132.6

Q ss_pred             CCCceEEEEEccCCCeEEEEEec----CeEEEEEcCC--CCeE--EEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYN----GHVHVWNHET--NQNV--KSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVF   84 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~d----g~v~~wd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iw   84 (229)
                      +......++|+|+++.|++++.+    +.|.+|++..  ++..  ............+.+  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56677889999999999998875    7999998865  4432  222323445667777  777776665 67899999


Q ss_pred             ECCCcceEEEe------cc--------CCCceeEEEEcCCCCEEEEE-eCCCcEEEEecCCcee------e------eee
Q psy4653          85 NYNTLERFHSF------EA--------HSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWA------C------QQV  137 (229)
Q Consensus        85 d~~~~~~~~~~------~~--------h~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~~~~------~------~~~  137 (229)
                      ++.....+..+      .+        +...+.+++|+|++++++++ ..++.|.+|++.....      +      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            98754332211      11        12335789999999966555 4588999999865431      1      111


Q ss_pred             eecceeeEEEEEEcCCCCCEEEEEE-CCCcEEEEeCCCCCc--eEEEe---cCCCceEEEEEEeCCCcCEEEEee-C-CC
Q psy4653         138 FEGHTHYVMQIVINPKDNNTFASAS-LDRTVKVWQLGSASP--NFTLE---GHEKGVNCVDYYHGGDKPYLISGA-D-DR  209 (229)
Q Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~--~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s-~-d~  209 (229)
                      ...+...+..+.|+| ++.+++.++ .++.|.+||+.++..  +..+.   .+......++|  ++++++|+++. . ++
T Consensus       206 ~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~--spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          206 KVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL--SPDGKYLYASNRLKAD  282 (361)
T ss_dssp             ECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE--CTTSSEEEEEECSSSC
T ss_pred             ecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE--CCCCCEEEEECCCCCC
Confidence            122234467899998 677666555 789999999976542  22232   23344667888  45666675555 4 58


Q ss_pred             eEEEEECC
Q psy4653         210 LVKIWDYQ  217 (229)
Q Consensus       210 ~i~iwd~~  217 (229)
                      .|.+|++.
T Consensus       283 ~i~v~~~~  290 (361)
T 3scy_A          283 GVAIFKVD  290 (361)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            99999996

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=6.5e-18  Score=147.69  Aligned_cols=199  Identities=9%  Similarity=0.016  Sum_probs=137.6

Q ss_pred             ceEEEEEccCCCeEEEEEe---------cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653          17 RVKCCDLHPTEPWMLASLY---------NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~---------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .|.+++|||||+.|+.++.         ++.|++||+.+++.+..... ...+..+.|+|+|+.|+.+. ++.|.+||+.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            4899999999999998876         78999999999876211111 24688899999999999885 7899999998


Q ss_pred             CcceEEEe-ccCCCce-----------------eEEEEcCCCCEEEEEeCCC----------------------------
Q psy4653          88 TLERFHSF-EAHSDYV-----------------RCVAVHPTQPFLLTSSDDM----------------------------  121 (229)
Q Consensus        88 ~~~~~~~~-~~h~~~i-----------------~~v~~~~~~~~~~s~~~d~----------------------------  121 (229)
                      +++..... .++...|                 .+++|+|+++.|+.++.|.                            
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            87654332 2222222                 4899999999999887552                            


Q ss_pred             ------cEEEEecCCceee--e-----eeeecceeeEEEEEEcCCCCCEEEEEECC----CcEEEEe----CCCCCceEE
Q psy4653         122 ------LIKLWNWEKAWAC--Q-----QVFEGHTHYVMQIVINPKDNNTFASASLD----RTVKVWQ----LGSASPNFT  180 (229)
Q Consensus       122 ------~v~lwd~~~~~~~--~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~~wd----~~~~~~~~~  180 (229)
                            .|++||+......  .     ..+.+|...+..+.|+|+ +.++++....    ..|.+||    ..+++....
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~  297 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT  297 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred             CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence                  7889998765321  1     113467888999999994 6666664422    2488899    766654433


Q ss_pred             E----ecCCCceE-----EEEEEeCCCcCEEE--EeeCCC--eEEEEECCCCe
Q psy4653         181 L----EGHEKGVN-----CVDYYHGGDKPYLI--SGADDR--LVKIWDYQNKT  220 (229)
Q Consensus       181 ~----~~h~~~v~-----~~~~~~~~~~~~l~--s~s~d~--~i~iwd~~~~~  220 (229)
                      +    .+|...+.     ...|++  +++.|+  +...+|  .|.+||..+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          298 QEHIEESRTGWAGGFFVSTPVFSY--DAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             GEEEEECSSSCSSSSSCCCCEECT--TSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             EecccccCCceEccccCCccEECC--CCCeEEEEEEccCCceEEEEEECCCCc
Confidence            3    35655555     677754  444333  344555  46667776665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=6.9e-16  Score=123.02  Aligned_cols=209  Identities=11%  Similarity=0.100  Sum_probs=153.1

Q ss_pred             CCceEEEEEccCCCeEEEEEec------------------------CeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYN------------------------GHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRK   69 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~d------------------------g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~   69 (229)
                      -..|.+++++|+++++++...+                        +.|.+||..+++.+..+... -.....++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4579999999999988887766                        47999999999887665422 2367899999999


Q ss_pred             CEEEEEeCCCeEEEEECCCcc-eEEEe---------ccCCCceeEEEEcC-CCCEEEEEe-CCCcEEEEecCCceeeeee
Q psy4653          70 NWIVTGSDDMQVCVFNYNTLE-RFHSF---------EAHSDYVRCVAVHP-TQPFLLTSS-DDMLIKLWNWEKAWACQQV  137 (229)
Q Consensus        70 ~~l~sg~~d~~i~iwd~~~~~-~~~~~---------~~h~~~i~~v~~~~-~~~~~~s~~-~d~~v~lwd~~~~~~~~~~  137 (229)
                      +++++...++.|..||.+... .+..+         ..+......++++| ++.++++.+ .++.|++||....  ....
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~--~~~~  180 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK--FVTQ  180 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC--EEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC--EEEE
Confidence            999998889999999986542 34444         23344678999999 788888886 6899999995432  2223


Q ss_pred             ee----------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe--cCCCceEEEEEEeCC-----CcC
Q psy4653         138 FE----------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE--GHEKGVNCVDYYHGG-----DKP  200 (229)
Q Consensus       138 ~~----------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~~-----~~~  200 (229)
                      +.          ++......++++|..+.++++...+++|++||..+++.+..+.  .+...+..+++.+ +     ++.
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            32          1223478899998547888888899999999998787777764  3445677777754 1     111


Q ss_pred             EEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         201 YLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ..++.+.+..|++||..+++.+.++.
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            22233445689999999999888863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=8.7e-16  Score=124.07  Aligned_cols=204  Identities=7%  Similarity=0.013  Sum_probs=137.6

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcC-CCCeEEEEEec-CcCeEEEEEcCCCCE--EEEEe-------------C
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHE-TNQNVKSFEVC-DLPVRAAKFVPRKNW--IVTGS-------------D   77 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~sg~-------------~   77 (229)
                      ...+..++|+|+++.|++++.+ .|.+|++. +++........ .....++.|+|+|++  +++++             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3468899999999999988887 99999997 77665433321 123556889999994  55553             6


Q ss_pred             CCeEEEEECC-CcceEEEec----cCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecC-Cceee-eeeee--cceeeEEE
Q psy4653          78 DMQVCVFNYN-TLERFHSFE----AHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWE-KAWAC-QQVFE--GHTHYVMQ  147 (229)
Q Consensus        78 d~~i~iwd~~-~~~~~~~~~----~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~-~~~~~-~~~~~--~~~~~v~~  147 (229)
                      ++.+.+|+++ .++....+.    .+...+.+++|+|++++++++.. ++.|++||+. .+... ...+.  .|...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8999999987 354433332    24567899999999998877654 6899999997 44221 12222  23445788


Q ss_pred             EEEcCCCCCEEEEEE-CCCcEEEEeCC--CCCce---EEEec-------CCC------ceEEEE-EEeCCCcCEEEEeeC
Q psy4653         148 IVINPKDNNTFASAS-LDRTVKVWQLG--SASPN---FTLEG-------HEK------GVNCVD-YYHGGDKPYLISGAD  207 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~-~d~~i~~wd~~--~~~~~---~~~~~-------h~~------~v~~~~-~~~~~~~~~l~s~s~  207 (229)
                      +.|+| ++.+++.++ .++.|.+|++.  +++..   ..+..       |..      .+..++ |  ++++++|+++..
T Consensus       198 ~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--spdG~~l~v~~~  274 (365)
T 1jof_A          198 VAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL--TFSGKYMFASSR  274 (365)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE--CTTSSEEEEEEE
T ss_pred             eEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE--CCCCCEEEEECC
Confidence            99998 677777666 57899999875  34432   12221       121      467788 7  456666666553


Q ss_pred             -CC-----eEEEEECC-CCeEE
Q psy4653         208 -DR-----LVKIWDYQ-NKTCV  222 (229)
Q Consensus       208 -d~-----~i~iwd~~-~~~~~  222 (229)
                       +.     .|.+|++. +++..
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEE
T ss_pred             CCCCCCCCeEEEEEECCCCCEE
Confidence             22     89999996 56543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.75  E-value=2.4e-15  Score=120.92  Aligned_cols=204  Identities=10%  Similarity=0.074  Sum_probs=133.3

Q ss_pred             CCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEE---Eec-----------CcCeEEEEEcCCCCEEEEE-eC
Q psy4653          14 RSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSF---EVC-----------DLPVRAAKFVPRKNWIVTG-SD   77 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~sg-~~   77 (229)
                      +......+++  +++.|+++. .++.|.+|++.+...+...   ..+           ...+.++.|+|++++|+++ ..
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            4455666777  888787776 5889999999764332211   111           1235789999999966554 45


Q ss_pred             CCeEEEEECCCcce------E-------EEeccCCCceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceee-eeee---e
Q psy4653          78 DMQVCVFNYNTLER------F-------HSFEAHSDYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWAC-QQVF---E  139 (229)
Q Consensus        78 d~~i~iwd~~~~~~------~-------~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~-~~~~---~  139 (229)
                      ++.|.+|+++....      +       .....+......++|+|+++++++++ .++.|.+||+..+... ....   .
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            78999998864331      1       11122345678999999999877666 6899999998754221 1111   2


Q ss_pred             cceeeEEEEEEcCCCCCEEEEEEC--CCcEEEEeCC--CCC--ceEEEecCCCceEEEEEEeCCCcCEEEEee-CCCeEE
Q psy4653         140 GHTHYVMQIVINPKDNNTFASASL--DRTVKVWQLG--SAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGA-DDRLVK  212 (229)
Q Consensus       140 ~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~--~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~  212 (229)
                      .+......+.|+| ++.+|+.+..  ++.|.+|++.  +++  .+..+.. ...+..++|  ++++++|++++ .++.|.
T Consensus       256 ~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~--spdg~~l~~~~~~~~~v~  331 (361)
T 3scy_A          256 VNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII--TPNGKYLLVACRDTNVIQ  331 (361)
T ss_dssp             SCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE--CTTSCEEEEEETTTTEEE
T ss_pred             CCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE--CCCCCEEEEEECCCCCEE
Confidence            2233457899998 6777755554  5899999986  333  2333443 345677888  45666777766 679999


Q ss_pred             EEEC--CCCeEEE
Q psy4653         213 IWDY--QNKTCVQ  223 (229)
Q Consensus       213 iwd~--~~~~~~~  223 (229)
                      +|++  .+++...
T Consensus       332 v~~~d~~~g~~~~  344 (361)
T 3scy_A          332 IFERDQATGLLTD  344 (361)
T ss_dssp             EEEECTTTCCEEE
T ss_pred             EEEEECCCCcEee
Confidence            9655  5666544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=3e-16  Score=135.89  Aligned_cols=203  Identities=7%  Similarity=-0.047  Sum_probs=140.6

Q ss_pred             CCCceEEEEEccCCCeEEEEEec----------CeEEEEEcCC------CCeEEEEE-ecCcCeEEEEEcCCCCEEEEEe
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYN----------GHVHVWNHET------NQNVKSFE-VCDLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~d----------g~v~~wd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~   76 (229)
                      |...+.+++|+|||+.|++++.+          ..|.+||+.+      ++.. .+. .+...+..+.|+|+|+.|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence            66789999999999999998877          5899999998      5543 333 3345677889999999998877


Q ss_pred             CC--------CeEEEEECC-Cc---ceEEEeccCCCceeEEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeeeecce
Q psy4653          77 DD--------MQVCVFNYN-TL---ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM--LIKLWNWEKAWACQQVFEGHT  142 (229)
Q Consensus        77 ~d--------~~i~iwd~~-~~---~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~--~v~lwd~~~~~~~~~~~~~~~  142 (229)
                      .+        ..|.+||++ ++   +.......|...+..+.|+|++++++++..++  .|.+||+..+ ....+...+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeecccccc
Confidence            54        379999998 56   33333444577899999999999888888888  5666665443 2233333322


Q ss_pred             ee--------EEEEEEcCCCCCEEEEEECCCcEEEE--eCCCCCceEEEecCCCceEEE-EEEeCCCcCEEEEeeCCCe-
Q psy4653         143 HY--------VMQIVINPKDNNTFASASLDRTVKVW--QLGSASPNFTLEGHEKGVNCV-DYYHGGDKPYLISGADDRL-  210 (229)
Q Consensus       143 ~~--------v~~~~~~~~~~~~l~s~~~d~~i~~w--d~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~l~s~s~d~~-  210 (229)
                      ..        +..+.++| ++.+++++.. +.+++|  |+.++. +..+..|...+..+ ++  .++.-++++++.+.. 
T Consensus       286 ~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~  360 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTV--SGTRAVGVAASPRTAY  360 (662)
T ss_dssp             BSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred             cccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEec--CCCEEEEEEcCCCCCC
Confidence            21        34567776 5788888888 999999  544443 56677776667666 43  444434555566654 


Q ss_pred             -EEEEECCCCeEEE
Q psy4653         211 -VKIWDYQNKTCVQ  223 (229)
Q Consensus       211 -i~iwd~~~~~~~~  223 (229)
                       |.+||..+++...
T Consensus       361 ~i~~~d~~~g~~~~  374 (662)
T 3azo_A          361 EVVELDTVTGRART  374 (662)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             EEEEEECCCCceEE
Confidence             5555666776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=2.7e-15  Score=116.81  Aligned_cols=200  Identities=17%  Similarity=0.250  Sum_probs=144.3

Q ss_pred             cCCCceEEEEE-ccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          13 ARSDRVKCCDL-HPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        13 ~~~~~v~~~~~-~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      +|...+..+++ .+++..+++... ++.|.+|| .+++.+..+... ......+.+.|+++++++...++.|.+||.+ +
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  151 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G  151 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C
Confidence            34457889999 467766666543 89999999 566776665432 2468899999999988888888999999965 4


Q ss_pred             ceEEEec--cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          90 ERFHSFE--AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        90 ~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      +.+..+.  .+......+++++++.++++...++.|++||....  ....+.  ++...+..+++++ ++.++++...++
T Consensus       152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~  228 (286)
T 1q7f_A          152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNN  228 (286)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSS
T ss_pred             CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCC
Confidence            5555543  34456899999999998888888999999997543  222332  2235678899988 678888887776


Q ss_pred             -cEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         166 -TVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       166 -~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                       .|.+||.. ++.+..+..+..  .+.++++.+  ++.++++ +.|+.|++|++....+
T Consensus       229 ~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~--~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          229 FNLTIFTQD-GQLISALESKVKHAQCFDVALMD--DGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             CEEEEECTT-SCEEEEEEESSCCSCEEEEEEET--TTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EEEEEECCC-CCEEEEEcccCCCCcceeEEECC--CCcEEEE-CCCCeEEEEEcccccc
Confidence             99999964 555556655433  366788754  5556666 6799999999876543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=8.3e-15  Score=114.08  Aligned_cols=205  Identities=16%  Similarity=0.187  Sum_probs=147.8

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe------cCcCeEEEEEc-CCCCEEEEEeC-CCeEEEE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV------CDLPVRAAKFV-PRKNWIVTGSD-DMQVCVF   84 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~sg~~-d~~i~iw   84 (229)
                      ++-....+++++|++.++++...++.|.+||.. ++.+..+..      +......+.+. ++++++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988887889999999987 566555542      12357889994 66766666643 7899999


Q ss_pred             ECCCcceEEEecc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEEEE
Q psy4653          85 NYNTLERFHSFEA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        85 d~~~~~~~~~~~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      | .+++.+..+.. +.....+++++|++.++++...++.|.+||.... . ...+.  ++...+..+++++ ++.++++.
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~-~~~~~~~~~~~~p~~i~~~~-~g~l~v~~  181 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V-LHKFGCSKHLEFPNGVVVND-KQEIFISD  181 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E-EEEEECTTTCSSEEEEEECS-SSEEEEEE
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E-EEEeCCCCccCCcEEEEECC-CCCEEEEE
Confidence            9 45666665542 3456889999999998888888899999996532 2 22222  3344578899998 57788887


Q ss_pred             ECCCcEEEEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCCC-eEEEEECCCCeEEEeec
Q psy4653         162 SLDRTVKVWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADDR-LVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       162 ~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~  226 (229)
                      ..++.|++||.. +..+..+..+  ...+..+++.  +++.++++...++ .|.+||.. ++.+.++.
T Consensus       182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d--~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~  245 (286)
T 1q7f_A          182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGIN--SNGEILIADNHNNFNLTIFTQD-GQLISALE  245 (286)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEEC--TTCCEEEEECSSSCEEEEECTT-SCEEEEEE
T ss_pred             CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEEC--CCCCEEEEeCCCCEEEEEECCC-CCEEEEEc
Confidence            889999999974 4444555433  3457778874  4556788877776 99999964 55666554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=9.3e-16  Score=123.90  Aligned_cols=201  Identities=13%  Similarity=0.164  Sum_probs=135.0

Q ss_pred             eEEEEEccCCCe--EEEEE-------------ecCeEEEEEcC-CCCeEEEEEe----cCcCeEEEEEcCCCCEEEEEeC
Q psy4653          18 VKCCDLHPTEPW--MLASL-------------YNGHVHVWNHE-TNQNVKSFEV----CDLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus        18 v~~~~~~p~~~~--l~~~~-------------~dg~v~~wd~~-~~~~~~~~~~----~~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      ..+++|+|+++.  ++++.             .+|.+.+|++. +++....+..    +...+.++.|+|+|++|++++.
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            556899999995  44442             58999999997 4665444332    3457899999999998877654


Q ss_pred             -CCeEEEEECC-Ccce--EEEec--cCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecCC--ceee-----eeeee----
Q psy4653          78 -DMQVCVFNYN-TLER--FHSFE--AHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEK--AWAC-----QQVFE----  139 (229)
Q Consensus        78 -d~~i~iwd~~-~~~~--~~~~~--~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~--~~~~-----~~~~~----  139 (229)
                       ++.|.+|+++ +++.  +..+.  .|......++|+|+++++++++. ++.|.+|+++.  +...     ...+.    
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence             6799999998 6653  23333  23567899999999998877765 68999998752  2211     11111    


Q ss_pred             ccee------eEEEEE-EcCCCCCEEEEEECC-C-----cEEEEeCC-CCCceE---EEecCCCceEEEEEEeCC-CcCE
Q psy4653         140 GHTH------YVMQIV-INPKDNNTFASASLD-R-----TVKVWQLG-SASPNF---TLEGHEKGVNCVDYYHGG-DKPY  201 (229)
Q Consensus       140 ~~~~------~v~~~~-~~~~~~~~l~s~~~d-~-----~i~~wd~~-~~~~~~---~~~~h~~~v~~~~~~~~~-~~~~  201 (229)
                      +|..      .+..+. |+| ++.+|+++..+ .     +|.+|++. +++...   ....+......++|.+.. ++++
T Consensus       245 g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~  323 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             CcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence            2222      477889 998 67776655532 2     89999986 444332   133344445667776520 3457


Q ss_pred             EEEeeC-CCeEEEEECCCC
Q psy4653         202 LISGAD-DRLVKIWDYQNK  219 (229)
Q Consensus       202 l~s~s~-d~~i~iwd~~~~  219 (229)
                      |++++. ++.|++|++...
T Consensus       324 l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          324 MAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSSCEEEEEEEETT
T ss_pred             EEEEEcCCCeEEEEEEchh
Confidence            877775 599999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=2.3e-16  Score=136.58  Aligned_cols=211  Identities=7%  Similarity=0.019  Sum_probs=142.8

Q ss_pred             hcccCCCceE---------EEEEc--cCCCe-EEEEEe-cCeEEEEEcC--C-CCeEEEEEe-----cCcCeEEEEEcCC
Q psy4653          10 KLTARSDRVK---------CCDLH--PTEPW-MLASLY-NGHVHVWNHE--T-NQNVKSFEV-----CDLPVRAAKFVPR   68 (229)
Q Consensus        10 ~~~~~~~~v~---------~~~~~--p~~~~-l~~~~~-dg~v~~wd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~   68 (229)
                      .+..|...|.         +..|+  ||++. |+.+.. +..|.+|++.  + ++. ..+..     +...+..+.|+|+
T Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spD  140 (662)
T 3azo_A           62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPE  140 (662)
T ss_dssp             ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETT
T ss_pred             eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCC
Confidence            3555555555         55565  99998 666553 5667777766  3 443 33333     3456889999999


Q ss_pred             CCEEEEEeCC----------CeEEEEECCC------cceEEEec-cCCCceeEEEEcCCCCEEEEEeCC--------CcE
Q psy4653          69 KNWIVTGSDD----------MQVCVFNYNT------LERFHSFE-AHSDYVRCVAVHPTQPFLLTSSDD--------MLI  123 (229)
Q Consensus        69 ~~~l~sg~~d----------~~i~iwd~~~------~~~~~~~~-~h~~~i~~v~~~~~~~~~~s~~~d--------~~v  123 (229)
                      |+.|+.++.+          ..|.+||+++      ++. ..+. .+...+..++|+|+++.|+.++.+        ..|
T Consensus       141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i  219 (662)
T 3azo_A          141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL  219 (662)
T ss_dssp             TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred             CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence            9999988876          5799999987      544 4444 556778899999999999877654        379


Q ss_pred             EEEecC-Cc--eeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC--cEEEEeCCCCCceEEEecCCCc--------eEE
Q psy4653         124 KLWNWE-KA--WACQQVFEGHTHYVMQIVINPKDNNTFASASLDR--TVKVWQLGSASPNFTLEGHEKG--------VNC  190 (229)
Q Consensus       124 ~lwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~h~~~--------v~~  190 (229)
                      ++||+. .+  .....+..++...+..+.|+| ++.+++++..++  .|.+||+.+++.......+...        +..
T Consensus       220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence            999998 34  134455555567788999998 567888888888  5556666555433222222211        345


Q ss_pred             EEEEeCCCcCEEEEeeCCCeEEEE--ECCCCeEEEeecc
Q psy4653         191 VDYYHGGDKPYLISGADDRLVKIW--DYQNKTCVQTLES  227 (229)
Q Consensus       191 ~~~~~~~~~~~l~s~s~d~~i~iw--d~~~~~~~~~~~~  227 (229)
                      ++|  .+++.++++++. +.++||  |..+++ +..++.
T Consensus       299 ~~~--~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~  333 (662)
T 3azo_A          299 FAP--LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAG  333 (662)
T ss_dssp             EEE--CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCS
T ss_pred             EeE--eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecC
Confidence            666  345668888888 999999  555555 555554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=6.1e-15  Score=128.98  Aligned_cols=210  Identities=5%  Similarity=0.009  Sum_probs=143.7

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecC-----eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe-------
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNG-----HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ-------   80 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg-----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~-------   80 (229)
                      +|+..+..++|||||+.|+.+..++     .|++||+.+++...... ....+..+.|+|+|+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4555789999999999998876543     89999999998765322 2223678999999999998887765       


Q ss_pred             ---------EEEEECCCcce----EEEeccCCCceeEEEEcCCCCEEEEEeC-----CCcEEEEecCC------ceeeee
Q psy4653          81 ---------VCVFNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTSSD-----DMLIKLWNWEK------AWACQQ  136 (229)
Q Consensus        81 ---------i~iwd~~~~~~----~~~~~~h~~~i~~v~~~~~~~~~~s~~~-----d~~v~lwd~~~------~~~~~~  136 (229)
                               |.+|++.+++.    +.....|...+..+.|+|++++++.++.     +..|++||+..      +.....
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     99999987652    2222334556789999999998876654     57899999875      321233


Q ss_pred             eeecceeeEEEEEEcCCCCCEEEEEEC-C---CcEEEEeCCCCC--ceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC
Q psy4653         137 VFEGHTHYVMQIVINPKDNNTFASASL-D---RTVKVWQLGSAS--PNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD  208 (229)
Q Consensus       137 ~~~~~~~~v~~~~~~~~~~~~l~s~~~-d---~~i~~wd~~~~~--~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d  208 (229)
                      .+..+...+.. .++| ++..|+..+. +   ..|.+||+.++.  ....+..|..  .+..+++.  +++.++++...|
T Consensus       281 ~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~lv~~~~~~  356 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV--RSNFLVLCYLHD  356 (710)
T ss_dssp             EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE--TTTEEEEEEEET
T ss_pred             EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE--cCCEEEEEEEEC
Confidence            33444444433 3556 4555554443 2   369999997764  2355555544  56777774  345578888888


Q ss_pred             Ce--EEEEECCCCeEEEeecc
Q psy4653         209 RL--VKIWDYQNKTCVQTLES  227 (229)
Q Consensus       209 ~~--i~iwd~~~~~~~~~~~~  227 (229)
                      +.  |.+||..+++.+..++.
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~  377 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPL  377 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECC
T ss_pred             CEEEEEEEECCCCCEEEecCC
Confidence            85  55667767777676654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=9e-15  Score=118.15  Aligned_cols=207  Identities=8%  Similarity=0.053  Sum_probs=138.6

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEec------CcCeEEEEEcCCCCEEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVC------DLPVRAAKFVPRKNWIV   73 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~   73 (229)
                      .+..+..+  .++|+|++++++++.          .++.|.+||..+.+.+..+...      ......+.++|+|++|+
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            34444444  889999999999986          3678999999999988877643      23456789999999998


Q ss_pred             EEeC--CCeEEEEECCCcceEEE-eccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeee--------------
Q psy4653          74 TGSD--DMQVCVFNYNTLERFHS-FEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQ--------------  135 (229)
Q Consensus        74 sg~~--d~~i~iwd~~~~~~~~~-~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~--------------  135 (229)
                      +++.  ++.|.+||+++++.+.. +... . ...+.+.|++ ..+++.+.|+++.+|+++......              
T Consensus       124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~  201 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD  201 (361)
T ss_dssp             EEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS
T ss_pred             EECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC
Confidence            8874  57899999999888776 5421 1 1223445544 345555566666655543211100              


Q ss_pred             -----------------------------------eeee--c----c----eeeEEEEEEcCCCCCEEEEEEC-------
Q psy4653         136 -----------------------------------QVFE--G----H----THYVMQIVINPKDNNTFASASL-------  163 (229)
Q Consensus       136 -----------------------------------~~~~--~----~----~~~v~~~~~~~~~~~~l~s~~~-------  163 (229)
                                                         ..+.  .    +    ......+.++|..+.++++...       
T Consensus       202 ~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~  281 (361)
T 2oiz_A          202 PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTH  281 (361)
T ss_dssp             CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCT
T ss_pred             ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccc
Confidence                                               0000  0    0    0000014667743334444331       


Q ss_pred             ---CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC--eEEEee
Q psy4653         164 ---DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK--TCVQTL  225 (229)
Q Consensus       164 ---d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~  225 (229)
                         +..|.+||+.+.+.+..+..+.  ...++|.+  ++++|++++. ++|.+||..++  +.++++
T Consensus       282 ~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp--dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          282 KFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ--QRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET--TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             cCCCceEEEEECCCCcEEEEEecCC--eeEEEECC--CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence               3489999999999888888876  88889864  5557877776 99999999999  999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=4.1e-15  Score=120.38  Aligned_cols=209  Identities=10%  Similarity=0.017  Sum_probs=144.5

Q ss_pred             hhhcccCCCceEE-----EEEccCCCeEEEEEe-cC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC
Q psy4653           8 KRKLTARSDRVKC-----CDLHPTEPWMLASLY-NG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM   79 (229)
Q Consensus         8 ~~~~~~~~~~v~~-----~~~~p~~~~l~~~~~-dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~   79 (229)
                      .+.+..|...+..     .+|+|||+.|+.++. +|  .|.+||+.+++.......+...+....|+|+++.|+.++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            3446666655665     789999999999886 66  488899999887666555554555678999999999999999


Q ss_pred             eEEEEECCCcceEEEeccCCCceeEE--EEcCCCCEEEEE----------------------eCCCcEEEEecCCceeee
Q psy4653          80 QVCVFNYNTLERFHSFEAHSDYVRCV--AVHPTQPFLLTS----------------------SDDMLIKLWNWEKAWACQ  135 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~h~~~i~~v--~~~~~~~~~~s~----------------------~~d~~v~lwd~~~~~~~~  135 (229)
                      .|.+||+.+++....+..+...+...  .++|++.+++..                      ..+..|.+||+..+. ..
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~  181 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-ST  181 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EE
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eE
Confidence            99999999988766666666655444  348999887743                      244689999988763 22


Q ss_pred             eeeecceeeEEEEEEcCCCCCEEEEEECC------CcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEee-
Q psy4653         136 QVFEGHTHYVMQIVINPKDNNTFASASLD------RTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGA-  206 (229)
Q Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s-  206 (229)
                      . +..+...+..+.|+|.++..++....+      ..|.++|...... ..+..+..  .+....|+  ++++.|+..+ 
T Consensus       182 ~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s--pdg~~l~~~~~  257 (388)
T 3pe7_A          182 V-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWV--PDGSALVYVSY  257 (388)
T ss_dssp             E-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEEC--TTSSCEEEEEE
T ss_pred             E-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceEC--CCCCEEEEEec
Confidence            3 234455678889998446777766643      3777888765443 33444432  35566774  4555554433 


Q ss_pred             CCC----eEEEEECCCCeE
Q psy4653         207 DDR----LVKIWDYQNKTC  221 (229)
Q Consensus       207 ~d~----~i~iwd~~~~~~  221 (229)
                      .++    .|.+||+.+++.
T Consensus       258 ~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCE
T ss_pred             CCCCCcceEEEEecCCCce
Confidence            222    399999998874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=8.3e-15  Score=116.95  Aligned_cols=191  Identities=12%  Similarity=0.148  Sum_probs=129.7

Q ss_pred             CceEEEEEccCCCeEEEEEec---C--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC------------
Q psy4653          16 DRVKCCDLHPTEPWMLASLYN---G--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD------------   78 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~d---g--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------------   78 (229)
                      ..+..+.|+|+|+.|+..+.+   +  .|.+||+.+++........ . +..+.|+|+++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            357889999999999887754   3  4788888887765554433 3 8999999999988887632            


Q ss_pred             ---------------CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC-------cEEEEecCCceeeee
Q psy4653          79 ---------------MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM-------LIKLWNWEKAWACQQ  136 (229)
Q Consensus        79 ---------------~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~-------~v~lwd~~~~~~~~~  136 (229)
                                     ..|.+||+++++.+..+.. . .+..+.|+|++ +++++..+.       ...||.+..+ ....
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~  212 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEK  212 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEE
Confidence                           4688999988776455544 3 78899999999 777776542       3455544422 3333


Q ss_pred             eeecceeeEEEEEEcCCCCCEEEEEECC--------CcEEEEeCCCCCceEEEecCCCceEE-EEEEeCCCcCEEEEeeC
Q psy4653         137 VFEGHTHYVMQIVINPKDNNTFASASLD--------RTVKVWQLGSASPNFTLEGHEKGVNC-VDYYHGGDKPYLISGAD  207 (229)
Q Consensus       137 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~  207 (229)
                      +.. + ..+..+  +| ++..++.++.+        ..|.+||  +++.......+...+.. +.|  + ++ ++++++.
T Consensus       213 l~~-~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~--s-dg-~~~~~~~  281 (347)
T 2gop_A          213 MFE-K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK--D-GK-VYFTLFE  281 (347)
T ss_dssp             EEE-E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE--T-TE-EEEEEEE
T ss_pred             ecc-C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE--c-Cc-EEEEEec
Confidence            332 3 444444  67 67777766644        3677777  44433323445566765 666  4 55 8899999


Q ss_pred             CCeEEEEECCCCeEEEe
Q psy4653         208 DRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       208 d~~i~iwd~~~~~~~~~  224 (229)
                      ++.++|| +.+++....
T Consensus       282 ~~~~~l~-~~~g~~~~~  297 (347)
T 2gop_A          282 EGSVNLY-IWDGEIKPI  297 (347)
T ss_dssp             TTEEEEE-EESSSEEEE
T ss_pred             CCcEEEE-EcCCceEEE
Confidence            9999999 876655433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=8.7e-15  Score=113.99  Aligned_cols=192  Identities=10%  Similarity=0.036  Sum_probs=147.5

Q ss_pred             CCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-Ccee
Q psy4653          26 TEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHS-DYVR  103 (229)
Q Consensus        26 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~  103 (229)
                      .++.+++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++|+  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            35688889999999999999999999988765 4688999999999988  35778999998 788888887653 4688


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeee-ee----cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc
Q psy4653         104 CVAVHPTQPFLLTSSD-DMLIKLWNWEKAWACQQV-FE----GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP  177 (229)
Q Consensus       104 ~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  177 (229)
                      ++.+.+++.++++.+. ++.|..+|.. ++..... +.    ++......+...+ ++.++++...++.|..||.. ++.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCE
Confidence            9999999999998887 7778877763 3222211 11    1112233345565 68899999999999999998 888


Q ss_pred             eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       178 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ++++.... ...++..  .++++++++++.++.|..+|.++++.+-++.
T Consensus       158 ~w~~~~~~-~~~~~~~--~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          158 LNSVKLSG-TPFSSAF--LDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEEECSS-CCCEEEE--CTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCC-CccceeE--cCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            88887643 3344444  3456688888888899999999999887764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=2e-14  Score=112.60  Aligned_cols=206  Identities=7%  Similarity=-0.017  Sum_probs=143.8

Q ss_pred             cccCCCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          11 LTARSDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      +..+..-..++.|+|+++ .++++..++.|..||..++  ...+......+.++.++++++++++...++.|.+||.+++
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            444556678999999998 7777888999999999987  5666656667899999999998888777889999999777


Q ss_pred             ceEEEeccC----CCceeEEEEcCCCCEEEEEeC-----------------CCcEEEEecCCceeeeeeeecceeeEEEE
Q psy4653          90 ERFHSFEAH----SDYVRCVAVHPTQPFLLTSSD-----------------DMLIKLWNWEKAWACQQVFEGHTHYVMQI  148 (229)
Q Consensus        90 ~~~~~~~~h----~~~i~~v~~~~~~~~~~s~~~-----------------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~  148 (229)
                      +........    ...+..++++|++.++++.+.                 .+.|..++.. + .. ..+..+......+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~-~~~~~~~~~~~gi  177 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TL-SAPIRDRVKPNGL  177 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CE-EEEECCCSSEEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CE-EEeecCCCCCccE
Confidence            643322211    234678999999998887321                 2355555544 2 22 2233444556788


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCC-CCCc---eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLG-SASP---NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +++| ++..+++.+.++.|.+|++. .+..   ...+..+...+..+++.  .+++++++.  ++.|.+||.+ ++.+..
T Consensus       178 ~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d--~~G~l~v~~--~~~v~~~~~~-g~~~~~  251 (296)
T 3e5z_A          178 AFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD--AGGLIWASA--GDGVHVLTPD-GDELGR  251 (296)
T ss_dssp             EECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB--TTSCEEEEE--TTEEEEECTT-SCEEEE
T ss_pred             EECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC--CCCCEEEEc--CCeEEEECCC-CCEEEE
Confidence            9998 57777888888999999986 3333   22232233445667774  455555554  8899999987 666666


Q ss_pred             ecc
Q psy4653         225 LES  227 (229)
Q Consensus       225 ~~~  227 (229)
                      +..
T Consensus       252 ~~~  254 (296)
T 3e5z_A          252 VLT  254 (296)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=2.1e-13  Score=108.33  Aligned_cols=209  Identities=11%  Similarity=0.085  Sum_probs=144.2

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC----CeEEEEEC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD----MQVCVFNY   86 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~   86 (229)
                      +.++...+.+++|+|++.+++++..++.|.+||..+++...........+.++.++|+++++++...+    +.|.+||.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            44566678999999999977788889999999999887655443445679999999999988887766    68999998


Q ss_pred             CCcceEEEec--cCCCceeEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC-E
Q psy4653          87 NTLERFHSFE--AHSDYVRCVAVHPTQPFLLTSSD------DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-T  157 (229)
Q Consensus        87 ~~~~~~~~~~--~h~~~i~~v~~~~~~~~~~s~~~------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~  157 (229)
                      ++++....+.  .+...+..++++|++.++++...      .+.|..+|.... ..... ......+..+.++| ++. +
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~~~~~~~i~~~~-dg~~l  196 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPI-IQNISVANGIALST-DEKVL  196 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEE-EEEESSEEEEEECT-TSSEE
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC-EEEEe-ecCCCcccceEECC-CCCEE
Confidence            8765432322  23457899999999988877654      245666665432 22222 22233467788988 565 4


Q ss_pred             EEEEECCCcEEEEeCCC-CCceEEE--------ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         158 FASASLDRTVKVWQLGS-ASPNFTL--------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       158 l~s~~~d~~i~~wd~~~-~~~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +++.+.++.|.+||+.. +.....+        .++ ..+..+++.  +++.++++...++.|.+||.+ ++.+..+.
T Consensus       197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d--~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~  270 (333)
T 2dg1_A          197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCID--SDDNLYVAMYGQGRVLVFNKR-GYPIGQIL  270 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEB--TTCCEEEEEETTTEEEEECTT-SCEEEEEE
T ss_pred             EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEEC--CCCCEEEEEcCCCEEEEECCC-CCEEEEEE
Confidence            55666788999999864 3322211        122 245667763  455677777788999999984 55555554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=5.9e-15  Score=129.67  Aligned_cols=200  Identities=11%  Similarity=0.075  Sum_probs=135.7

Q ss_pred             EEEEEccCCCeEEEEEec---------CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q psy4653          19 KCCDLHPTEPWMLASLYN---------GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~d---------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~   89 (229)
                      ...+||||++.++.++.+         +.+.+||+.+++... +..+...+....|+|+|+.||.+ .|+.|.+|+..++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC
Confidence            447899999999998876         566799999987643 34455679999999999999888 4689999999887


Q ss_pred             ceEEE-eccCCCce-----------------eEEEEcCCCCEEEEEeCCC------------------------------
Q psy4653          90 ERFHS-FEAHSDYV-----------------RCVAVHPTQPFLLTSSDDM------------------------------  121 (229)
Q Consensus        90 ~~~~~-~~~h~~~i-----------------~~v~~~~~~~~~~s~~~d~------------------------------  121 (229)
                      +..+. ..++...+                 ..+.||||++.|+..+.|.                              
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            65432 22332222                 3589999999988765322                              


Q ss_pred             ------cEEEEecCC---ce--eeeeeee-----cceeeEEEEEEcCCCCCEEEEEE----CCCcEEEEeCCCCC-----
Q psy4653         122 ------LIKLWNWEK---AW--ACQQVFE-----GHTHYVMQIVINPKDNNTFASAS----LDRTVKVWQLGSAS-----  176 (229)
Q Consensus       122 ------~v~lwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~~-----  176 (229)
                            +|++||+..   +.  ....+..     +|...+..+.|+| ++..++...    .+..|++||+.+++     
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~  301 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNC  301 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence                  477888876   42  1222221     3777899999999 566555443    23479999998876     


Q ss_pred             -ceEEE--ecCCCceE-----EEEEEeCCCcCEEE-EeeC-C--CeEEEEECCCCeEEE
Q psy4653         177 -PNFTL--EGHEKGVN-----CVDYYHGGDKPYLI-SGAD-D--RLVKIWDYQNKTCVQ  223 (229)
Q Consensus       177 -~~~~~--~~h~~~v~-----~~~~~~~~~~~~l~-s~s~-d--~~i~iwd~~~~~~~~  223 (229)
                       .+..+  +.|...+.     ...|+  ++++.|+ ..+. +  ..|.+||..++++.+
T Consensus       302 ~~~~~l~~~~~~~~v~~~~~~~p~fs--pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          302 LVARQHIEMSTTGWVGRFRPSEPHFT--LDGNSFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             CGGGCEEEECSSSCSSSSSCCCCEEC--TTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             eEEEEeeeccCCceEccCcCCCceEc--CCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence             12222  44554443     56674  4555554 5553 3  458888988776543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=1.1e-14  Score=127.06  Aligned_cols=208  Identities=7%  Similarity=-0.077  Sum_probs=139.6

Q ss_pred             cCCCceEEEEEccCCCeEEEEE-----ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe-------
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASL-----YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ-------   80 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~-----~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~-------   80 (229)
                      +|+..+.+++|||||+.|+.+.     .+..|++||+.+++.+..-.........+.|+|+|+.|+.++.|..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            5666799999999999988543     3358999999998864111111112267899999999999988765       


Q ss_pred             ------EEEEECCCcc----eEEEeccCCCceeEEEEcCCCCEEEEEeCCC----cEEEEecCCceeeeeeeecceeeEE
Q psy4653          81 ------VCVFNYNTLE----RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM----LIKLWNWEKAWACQQVFEGHTHYVM  146 (229)
Q Consensus        81 ------i~iwd~~~~~----~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~----~v~lwd~~~~~~~~~~~~~~~~~v~  146 (229)
                            |.+|++.+++    .+.....|...+..+.|+|++++++.++.++    .|++|+.... .... +..+...+.
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-l~~~~~~~~  275 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-DFRL-LVKGVGAKY  275 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-SCEE-EEECSSCCE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-ceEE-eecCCCceE
Confidence                  9999998765    2333344556788999999999887766555    6777765433 2222 333333444


Q ss_pred             EEEEcCCCCCEEEEEE---CCCcEEEEeCCCCCc--eEEEecC--CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC-C
Q psy4653         147 QIVINPKDNNTFASAS---LDRTVKVWQLGSASP--NFTLEGH--EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ-N  218 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~-~  218 (229)
                      ...+ +.+. ++++..   .++.|.+||+.++..  ...+..+  ...+..+++.   ++.++++...|+..+||.+. .
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~---~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV---GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE---TTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE---CCEEEEEEEECCEEEEEEEeCC
Confidence            4555 3334 555544   357899999977653  2344443  3446777774   34588899999999998765 4


Q ss_pred             CeEEEeecc
Q psy4653         219 KTCVQTLES  227 (229)
Q Consensus       219 ~~~~~~~~~  227 (229)
                      ++.+..+..
T Consensus       351 g~~~~~l~~  359 (695)
T 2bkl_A          351 GKPVRTVQL  359 (695)
T ss_dssp             CCEEEECCC
T ss_pred             CCeeEEecC
Confidence            555565543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=1.3e-13  Score=109.84  Aligned_cols=200  Identities=10%  Similarity=0.017  Sum_probs=144.1

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-eEEEEE---------ecCcCeEEEEEcC-CCCEEEEEe-CCCe
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVKSFE---------VCDLPVRAAKFVP-RKNWIVTGS-DDMQ   80 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~sg~-~d~~   80 (229)
                      ++-.....++++|++.++++...++.|++||..... .+..+.         .+-.....++++| +++++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            344578899999999988888889999999986542 344442         1122578999999 788888886 6899


Q ss_pred             EEEEECCCcceEEEecc----------CCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEE
Q psy4653          81 VCVFNYNTLERFHSFEA----------HSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQ  147 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~----------h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~  147 (229)
                      |.+|+. .++.+..+..          +-.....++++|+ +.++++...++.|++||.+.+.. ...+  ..+...+..
T Consensus       168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFA  245 (329)
T ss_dssp             EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEE
T ss_pred             EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcce
Confidence            999994 4555555532          2234789999998 77778888899999999874433 3333  234445677


Q ss_pred             EEEcCCCCCEEEEE-------ECCCcEEEEeCCCCCceEEEe---cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         148 IVINPKDNNTFASA-------SLDRTVKVWQLGSASPNFTLE---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       148 ~~~~~~~~~~l~s~-------~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      +.++|  +..+.+.       ..+.+|++||..+++.+..+.   .+......+++.  +++.++++...++.|++|+..
T Consensus       246 ~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~--~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          246 ISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS--EDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC--TTSEEEEEESSSCCEEEEEEE
T ss_pred             eeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC--CCCCEEEEECCCCEEEEEeCC
Confidence            77776  3333333       344589999999888777763   556668888884  455688888899999999986


Q ss_pred             C
Q psy4653         218 N  218 (229)
Q Consensus       218 ~  218 (229)
                      .
T Consensus       322 ~  322 (329)
T 3fvz_A          322 E  322 (329)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=1.8e-15  Score=122.49  Aligned_cols=201  Identities=9%  Similarity=-0.005  Sum_probs=132.5

Q ss_pred             eEEEEEccCCCeEEEEEec---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          18 VKCCDLHPTEPWMLASLYN---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      +..++|+|+|+.++.+...   ..|.+||+.+++................|+|+++.|+.++.++.|.+||+++++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            7788999999998877543   4788899998876444332222233478999999999999999999999988776544


Q ss_pred             eccCCCceeE-------------------EEEcCCCCEEEEE-----eCCCcEEEEecCCceeeeeeeecceeeEEEEEE
Q psy4653          95 FEAHSDYVRC-------------------VAVHPTQPFLLTS-----SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVI  150 (229)
Q Consensus        95 ~~~h~~~i~~-------------------v~~~~~~~~~~s~-----~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~  150 (229)
                      +..+......                   +.|+|+++.++..     ..+..|.+||+..+. ...+. .+...+..+.|
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-LEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-EEEEE-EESSCEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-EEeec-cCCcccccceE
Confidence            4434332222                   3567777765543     456789999997653 23332 34556788899


Q ss_pred             cCCCCCEEEEEECC------CcEEEEeCCCCCceEEEecCC--CceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECC
Q psy4653         151 NPKDNNTFASASLD------RTVKVWQLGSASPNFTLEGHE--KGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQ  217 (229)
Q Consensus       151 ~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~  217 (229)
                      +|.++..++..+.+      ..|.+||+..+.. ..+..+.  ..+..++|.  ++++.|+.++.+     +.|.+||+.
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWI--PDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEEC--TTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEEC--CCCCEEEEEecCCCCccceEEEEECC
Confidence            98445656655433      4688888865543 2232232  246667774  455556655543     459999998


Q ss_pred             CCeEEE
Q psy4653         218 NKTCVQ  223 (229)
Q Consensus       218 ~~~~~~  223 (229)
                      +++...
T Consensus       273 ~g~~~~  278 (396)
T 3c5m_A          273 TLENEE  278 (396)
T ss_dssp             TCCEEE
T ss_pred             CCCeEE
Confidence            886543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=1.4e-13  Score=105.99  Aligned_cols=199  Identities=9%  Similarity=-0.033  Sum_probs=141.3

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      ..+.+++++|++..+++.. ++.|.+||..+.... .+.. .......+.+.++++++++...++.|.+|+..+......
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            4678999999998555555 889999998875443 2222 224688999999999888877788999997665443322


Q ss_pred             eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653          95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      .........++++++++.++++...++.|.+||......... ...+...+..+++++ ++.++++...++.|.+||...
T Consensus       145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-PFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-CCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTC
T ss_pred             ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee-cccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCC
Confidence            222334678999999999777777788999999876532222 122224577888987 567888777788999999876


Q ss_pred             CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       175 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      .........+...+.++++.  ++++++++.+.++.|++++....+
T Consensus       223 ~~~~~~~~~~~~~p~~i~~~--~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          223 TTSTVLPFTGLNTPLAVAVD--SDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             SCCEECCCCSCSCEEEEEEC--TTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CcceeeccCCCCCceeEEEC--CCCCEEEEECCCCEEEEEcCCCcc
Confidence            54332222333457788874  455688888899999999987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=2.3e-13  Score=106.51  Aligned_cols=203  Identities=9%  Similarity=-0.032  Sum_probs=139.1

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEE----Ee-----
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVT----GS-----   76 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s----g~-----   76 (229)
                      .+..+...+.+++++|++.++++...++.|.+||..+++.........    ..+..+.++|+|+++++    |+     
T Consensus        63 ~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~  142 (296)
T 3e5z_A           63 PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE  142 (296)
T ss_dssp             EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred             EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence            355566789999999999977766667999999998887644432211    24567999999998887    33     


Q ss_pred             --------CCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee---eeeeecceeeE
Q psy4653          77 --------DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC---QQVFEGHTHYV  145 (229)
Q Consensus        77 --------~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~---~~~~~~~~~~v  145 (229)
                              ..+.|..++.+ + .+..+..+......++|+|+++.+++.+.++.|.+|++......   ...+..+...+
T Consensus       143 ~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p  220 (296)
T 3e5z_A          143 GYGGEMELPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT  220 (296)
T ss_dssp             SSCCCCCSSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC
T ss_pred             cccccccCCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC
Confidence                    12455555554 3 33444556667789999999998877778899999998622122   22332233445


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         146 MQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       146 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      ..+.+++ ++.++++.  ++.|.+||.. ++.+..+..+.. +.+++|. .+++..|..++.++ +.-++.++.+.
T Consensus       221 ~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~-~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          221 DGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFG-GPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             CSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEE-STTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             CeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEE-CCCCCEEEEEcCCe-EEEEEcccccc
Confidence            6788887 57766655  8899999986 666667776666 8888885 34556677777663 44556665543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.63  E-value=1.3e-13  Score=111.44  Aligned_cols=207  Identities=10%  Similarity=-0.005  Sum_probs=134.7

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEE--EEcCCCCEEEEE-------------
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA--KFVPRKNWIVTG-------------   75 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~sg-------------   75 (229)
                      ..++...+..+.|+|+++.|+.+..++.|.+||+.+++....+......+...  .++|+++.++..             
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~  155 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW  155 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence            34555566678899999999999999999999999998877666554434333  348899888742             


Q ss_pred             ---------eCCCeEEEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCC------CcEEEEecCCceeeeeeee
Q psy4653          76 ---------SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDD------MLIKLWNWEKAWACQQVFE  139 (229)
Q Consensus        76 ---------~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d------~~v~lwd~~~~~~~~~~~~  139 (229)
                               ..+..|.+||+.+++.. .+..+...+..+.|+| +++.++....+      ..|.++|+... ....+..
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~  233 (388)
T 3pe7_A          156 KKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-NMRKVKT  233 (388)
T ss_dssp             HHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-CCEESCC
T ss_pred             chhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-ceEEeee
Confidence                     24467999999887653 4445667789999999 99988766553      37888887543 2223222


Q ss_pred             cce-eeEEEEEEcCCCCCEEEEEE-C-CC---cEEEEeCCCCCceE--EEecCCCc---eEEEEEEeCCCcCEEEEe---
Q psy4653         140 GHT-HYVMQIVINPKDNNTFASAS-L-DR---TVKVWQLGSASPNF--TLEGHEKG---VNCVDYYHGGDKPYLISG---  205 (229)
Q Consensus       140 ~~~-~~v~~~~~~~~~~~~l~s~~-~-d~---~i~~wd~~~~~~~~--~~~~h~~~---v~~~~~~~~~~~~~l~s~---  205 (229)
                      ... ..+..+.|+| ++..|+..+ . +.   .|.+||+.+++...  .+.++...   .....|++.  +..|+..   
T Consensus       234 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~  310 (388)
T 3pe7_A          234 HAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD--GSDAPVDVQD  310 (388)
T ss_dssp             CCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE--ECCC------
T ss_pred             CCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC--CCcceeEeee
Confidence            221 3577888998 566554433 2 22   39999998876422  22221000   111245543  3334422   


Q ss_pred             ------eCCCeEEEEECCCCeEE
Q psy4653         206 ------ADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       206 ------s~d~~i~iwd~~~~~~~  222 (229)
                            ..+..|.+||..+++..
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~  333 (388)
T 3pe7_A          311 DSGYKIENDPFLYVFNMKNGTQH  333 (388)
T ss_dssp             ------CCCCEEEEEETTTTEEE
T ss_pred             ccccccCCCCEEEEEeccCCceE
Confidence                  55678999999988753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=1.2e-13  Score=110.14  Aligned_cols=188  Identities=7%  Similarity=0.081  Sum_probs=129.2

Q ss_pred             eEEEEEccCCCeEEEEEec---------------------------CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC
Q psy4653          18 VKCCDLHPTEPWMLASLYN---------------------------GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN   70 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~d---------------------------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~   70 (229)
                      +..++|+|+++.|+.++.+                           ..|.+||+.+++.+..+.. . .+..+.|+|++ 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            8999999999988887642                           5799999999877455544 3 78899999999 


Q ss_pred             EEEEEeCCC-------eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC--------CcEEEEecCCceeee
Q psy4653          71 WIVTGSDDM-------QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD--------MLIKLWNWEKAWACQ  135 (229)
Q Consensus        71 ~l~sg~~d~-------~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d--------~~v~lwd~~~~~~~~  135 (229)
                      +++++..+.       ...+|.+++++ ...+..+ ..+..+  +|+++.++.++.+        ..|.+||  .+ ...
T Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~  255 (347)
T 2gop_A          183 IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EVM  255 (347)
T ss_dssp             EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEE
T ss_pred             EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-ceE
Confidence            888776542       33455444443 3444444 444444  9999988776644        3677887  22 334


Q ss_pred             eeeecceeeEEE-EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeE-EE
Q psy4653         136 QVFEGHTHYVMQ-IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLV-KI  213 (229)
Q Consensus       136 ~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i-~i  213 (229)
                      .+..++...+.. +.|+  ++ ++++++.++.+++| +..++. ..+..+...+.++++.  +  .++++++.++.. +|
T Consensus       256 ~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s--~--~~~~~~~~~~~~~~l  326 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVD--E--IVVYLKETATRLREL  326 (347)
T ss_dssp             ESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEES--S--SEEEEEECSSSCCEE
T ss_pred             eccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeee--C--cEEEEEcCCCChHHh
Confidence            444555666775 7887  56 88899999999999 874443 4444556678888874  3  477777777665 88


Q ss_pred             EECCCCeEEEeec
Q psy4653         214 WDYQNKTCVQTLE  226 (229)
Q Consensus       214 wd~~~~~~~~~~~  226 (229)
                      |.+. ++. ..++
T Consensus       327 ~~~~-g~~-~~lt  337 (347)
T 2gop_A          327 FTWD-GEE-KQLT  337 (347)
T ss_dssp             EEES-SSE-EECC
T ss_pred             eEeC-CcE-EEec
Confidence            8877 553 3344

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=3.6e-13  Score=118.35  Aligned_cols=207  Identities=7%  Similarity=-0.004  Sum_probs=134.2

Q ss_pred             cCCCceEEEEEccCCCeEEEEEec-----CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCe-------
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYN-----GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQ-------   80 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~d-----g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~-------   80 (229)
                      +|+..+..++|||||+.|+.+..+     ..|++||+.+++.+... .....+..+.|+|+ +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            344468899999999999887654     35999999999875532 12222357889999 98888876553       


Q ss_pred             -------EEEEECCCcce--EEEe--ccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCceee-eeeeeccee
Q psy4653          81 -------VCVFNYNTLER--FHSF--EAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAWAC-QQVFEGHTH  143 (229)
Q Consensus        81 -------i~iwd~~~~~~--~~~~--~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~~~-~~~~~~~~~  143 (229)
                             |.+|++.++..  ...+  ..+...+..+.|+|++++++..+.+     ..|++||+..+... ...+..+..
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                   88999876652  2223  2333468899999999988766644     38999998765211 233333333


Q ss_pred             eEEEEEEcCCCCCEEEEEEC----CCcEEEEeCCCCC-ceEEE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         144 YVMQIVINPKDNNTFASASL----DRTVKVWQLGSAS-PNFTL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      ....... | ++..|+..+.    ++.|.+||+.+.. ....+ ..+...+..+++.   ++.++++...|+..+||.+.
T Consensus       318 ~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~---~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          318 AQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA---GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE---BTEEEEEEEETTEEEEEEEE
T ss_pred             ceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE---CCEEEEEEEECCEEEEEEEe
Confidence            3333333 5 4666666654    3459999987642 33333 3444445566664   34578889999998888765


Q ss_pred             -CCeEEEeec
Q psy4653         218 -NKTCVQTLE  226 (229)
Q Consensus       218 -~~~~~~~~~  226 (229)
                       .++.++.++
T Consensus       393 ~~g~~~~~l~  402 (741)
T 1yr2_A          393 LDGKPAGAVS  402 (741)
T ss_dssp             TTSCEEEECB
T ss_pred             CCCCceeecc
Confidence             455666655

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=1.1e-13  Score=112.20  Aligned_cols=170  Identities=11%  Similarity=0.067  Sum_probs=127.9

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-----------eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-----------NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      +++.+++++....+++|+.+ .+.+|++.+.+           ..... .... |..+.|  ++++|+++ .++.|.+||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            69999999999999998877 55559976432           11222 2445 999999  89999999 889999999


Q ss_pred             CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          86 YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        86 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      +...........|...+..+.+.+.  .+++++.||+|.+||+.+... ..    +...|.+++|+| ++  ++.|..|+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSp-kG--~~vg~~dg  182 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTN-SQ--LAVLLKDR  182 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECS-SE--EEEEETTS
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcC-Cc--eEEEEcCC
Confidence            9876655556677778888777654  388899999999999986533 22    456799999998 45  67799999


Q ss_pred             cEEEEeCCCCCc--eEEE------e---cCCCceEEEEEEeCCCcCEEEE
Q psy4653         166 TVKVWQLGSASP--NFTL------E---GHEKGVNCVDYYHGGDKPYLIS  204 (229)
Q Consensus       166 ~i~~wd~~~~~~--~~~~------~---~h~~~v~~~~~~~~~~~~~l~s  204 (229)
                      ++++|+......  ..++      .   +|...|.++.|.  ++..++++
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl--~~~~flv~  230 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL--SPQDFLAV  230 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES--SSSEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe--cCCeEEEE
Confidence            999998876553  4455      2   366778888884  35556665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.58  E-value=6.5e-14  Score=113.35  Aligned_cols=196  Identities=10%  Similarity=0.016  Sum_probs=128.7

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEE-------------------EEEcCCCCEEEEE----
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA-------------------AKFVPRKNWIVTG----   75 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~sg----   75 (229)
                      ..+.|+|+++.|+.++.++.|.+||+.+++....+.........                   ..|+|+++.++.+    
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            34789999999999999999999999998876555433321111                   3457777766554    


Q ss_pred             -eCCCeEEEEECCCcceEEEeccCCCceeEEEEcC-CCCEEEEEeCC------CcEEEEecCCceeeeeeeecc-eeeEE
Q psy4653          76 -SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDD------MLIKLWNWEKAWACQQVFEGH-THYVM  146 (229)
Q Consensus        76 -~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d------~~v~lwd~~~~~~~~~~~~~~-~~~v~  146 (229)
                       ..+..|.+||+++++..... .+...+..+.|+| ++..++..+.+      ..|.+||+.... ...+.... ...+.
T Consensus       164 ~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~  241 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHAEGESCT  241 (396)
T ss_dssp             TCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCCTTEEEE
T ss_pred             CCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccCCCcccc
Confidence             35668999999887654433 4667789999999 77766655443      468888886542 22222221 23577


Q ss_pred             EEEEcCCCCCEEEEEECC-----CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee---------------
Q psy4653         147 QIVINPKDNNTFASASLD-----RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA---------------  206 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---------------  206 (229)
                      .+.|+| ++..|+.++.+     +.|++||+.+++...... .. ... ..|.+ .++.++++++               
T Consensus       242 ~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~-~dg~~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          242 HEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSN-FDGSLMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             EEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEEC-SSSSEEEEEECCC----------CC
T ss_pred             ceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccC-CCCceEEEecCCcceeecccccccc
Confidence            889998 56766655543     449999998776433222 11 233 56653 1455666654               


Q ss_pred             -CCCeEEEEECCCCeE
Q psy4653         207 -DDRLVKIWDYQNKTC  221 (229)
Q Consensus       207 -~d~~i~iwd~~~~~~  221 (229)
                       .+..|.+||..+++.
T Consensus       317 ~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCCCEEEEEETTTTBC
T ss_pred             CCCCcEEEEecccCce
Confidence             347899999988764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=3e-12  Score=103.35  Aligned_cols=144  Identities=13%  Similarity=0.095  Sum_probs=100.6

Q ss_pred             CCCeEEEEE------ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCc
Q psy4653          26 TEPWMLASL------YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD----------DMQVCVFNYNTL   89 (229)
Q Consensus        26 ~~~~l~~~~------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----------d~~i~iwd~~~~   89 (229)
                      +++.+++..      .|+.|.+||..+++.+..+.....+  .+.|+|++++|.+++.          ++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            455566543      4789999999999988887765544  8999999999988863          567999999988


Q ss_pred             ceEEEeccC------CCceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          90 ERFHSFEAH------SDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        90 ~~~~~~~~h------~~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      +.+..+...      ......++|+|++++++++..  +++|.+||+.........+... + ...+.+.|.....+++.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEE
Confidence            887776533      234568999999999988764  6899999998774433302211 1 11133445434566666


Q ss_pred             ECCCcEEEEeCC
Q psy4653         162 SLDRTVKVWQLG  173 (229)
Q Consensus       162 ~~d~~i~~wd~~  173 (229)
                      +.|+++.+|+..
T Consensus       170 ~~dg~~~~v~~~  181 (361)
T 2oiz_A          170 CGDGGLLTINLG  181 (361)
T ss_dssp             ETTSSEEEEEEC
T ss_pred             CCCCcEEEEEEC
Confidence            666766666653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.56  E-value=1e-12  Score=101.08  Aligned_cols=199  Identities=7%  Similarity=-0.078  Sum_probs=133.9

Q ss_pred             ceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          17 RVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ...+++++|++..++ +...++.|.+||..+...............++.+.++++++++.. ++.|..||.+..... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            678999999998666 446789999999876543222112224578899999999766665 889999998765432 22


Q ss_pred             c-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653          96 E-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus        96 ~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      . ........+++++++.++++...++.|.+|+........ ........+..+++++ ++.++++...++.|.+||...
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-CCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-eccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC
Confidence            2 223568899999999988887778899999865432211 1112223456788887 567888777788999999876


Q ss_pred             CCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         175 ASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       175 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      .........+...+..+++.  +++.++++...++.|.+||......
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d--~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVD--EAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEEC--TTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             CceEeecccCCCCceEEEEC--CCCCEEEEECCCCcEEEEcCCCCcc
Confidence            55333222333457778874  3456777777788999999876543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=3.4e-12  Score=99.33  Aligned_cols=208  Identities=8%  Similarity=-0.008  Sum_probs=144.8

Q ss_pred             hhhcccCC-CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q psy4653           8 KRKLTARS-DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD-DMQVCVF   84 (229)
Q Consensus         8 ~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~-d~~i~iw   84 (229)
                      .-++..+. ..+.++.+.|+|++++  +.++.|..||. +++.+..+.... ..+.++.+.++|+.+++.+. ++.+..+
T Consensus        28 ~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v  104 (276)
T 3no2_A           28 VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV  104 (276)
T ss_dssp             EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred             EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence            33455444 4789999999999888  45889999999 899999988653 46888999999999999887 7778777


Q ss_pred             ECCCcceEEEecc------CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE
Q psy4653          85 NYNTLERFHSFEA------HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        85 d~~~~~~~~~~~~------h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      |. .++.+..+..      +......+.+.+++.++++...++.|.+||.+ ++. ...+... ..+..+...+ ++.++
T Consensus       105 d~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~-~g~~~  179 (276)
T 3no2_A          105 NM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLD-NGDCL  179 (276)
T ss_dssp             CT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-EEEEECS-SCCCEEEECT-TSCEE
T ss_pred             eC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-EEEEECC-CCccceeEcC-CCCEE
Confidence            75 5666665532      22234567789999999999999999999987 533 3333332 2344455665 67889


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecCC------CceEEEEEEeCCCcCEEEEeeCC--------CeEEEEEC-CCCeEEE
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGHE------KGVNCVDYYHGGDKPYLISGADD--------RLVKIWDY-QNKTCVQ  223 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~l~s~s~d--------~~i~iwd~-~~~~~~~  223 (229)
                      ++++.+++|..+|..+++.++++..+.      ..+..+..  ..++.++++.+..        +..+++.+ .+++.+=
T Consensus       180 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~--~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W  257 (276)
T 3no2_A          180 VACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFP--LQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW  257 (276)
T ss_dssp             EECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEE--CTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred             EEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceE--cCCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence            888888899999999999998886432      11444444  3455566665311        23355555 3455543


Q ss_pred             ee
Q psy4653         224 TL  225 (229)
Q Consensus       224 ~~  225 (229)
                      ++
T Consensus       258 ~~  259 (276)
T 3no2_A          258 QL  259 (276)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=2.6e-12  Score=102.34  Aligned_cols=209  Identities=8%  Similarity=0.001  Sum_probs=141.3

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecC-----cCeEEEEEcCCCCEEEEEe-CCCeE
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCD-----LPVRAAKFVPRKNWIVTGS-DDMQV   81 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~-~d~~i   81 (229)
                      +++.. ......++++|++. ++++. .++.|.+||..+++....+....     .....+.+ ..++++++.. .++.|
T Consensus        78 ~~i~~-~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           78 GRITG-FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRI  154 (328)
T ss_dssp             EEEEC-CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred             EEcCC-CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence            34432 35678899999985 55554 89999999999998877766543     02345556 3444444443 48899


Q ss_pred             EEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC----------CcEEEEecCCceeeeeeeec-ceeeEEEEEE
Q psy4653          82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----------MLIKLWNWEKAWACQQVFEG-HTHYVMQIVI  150 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----------~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~  150 (229)
                      .++|+++++.+..+... .....+.++|++++++++..+          +.|.++|...... ...+.- .......+++
T Consensus       155 ~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             EEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEE
T ss_pred             EEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEE
Confidence            99999998877766543 334688999999877776554          7899999876643 322221 1224678999


Q ss_pred             cCCCCCEEEEEECCCcEEEEeCCCCCceE--EEecCCCceEEEEEEeCCCcCEEEEe----eCCCeEEEEECCCCeEEEe
Q psy4653         151 NPKDNNTFASASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLISG----ADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       151 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~----s~d~~i~iwd~~~~~~~~~  224 (229)
                      +| ++..+..+..  .|.+||..+++...  .+.........+++.+. ++.+.++.    ..++.|.+||.. ++.+.+
T Consensus       233 ~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~-~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~  307 (328)
T 3dsm_A          233 NG-TRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN-NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE  307 (328)
T ss_dssp             CT-TSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT-TCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred             ec-CCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC-CCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence            98 4566655443  89999998765421  12222345677887432 44566666    678999999998 888888


Q ss_pred             ecc
Q psy4653         225 LES  227 (229)
Q Consensus       225 ~~~  227 (229)
                      ++.
T Consensus       308 i~~  310 (328)
T 3dsm_A          308 FYV  310 (328)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=1.6e-12  Score=113.76  Aligned_cols=200  Identities=7%  Similarity=-0.018  Sum_probs=137.3

Q ss_pred             ceEEEEEccCCCeEEEEEecCe----------------EEEEEcCCCCeE--EEEEec--CcCeEEEEEcCCCCEEEEEe
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGH----------------VHVWNHETNQNV--KSFEVC--DLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~----------------v~~wd~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~sg~   76 (229)
                      .+..++|+||++.|+.++.++.                |.+|++.+++..  ..+...  ...+..+.|+|+|++|+.++
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            3678999999999999987765                999999987632  333332  33478899999999988776


Q ss_pred             C-----CCeEEEEECCC------cc-eEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCcee--eeeee
Q psy4653          77 D-----DMQVCVFNYNT------LE-RFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWA--CQQVF  138 (229)
Q Consensus        77 ~-----d~~i~iwd~~~------~~-~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~--~~~~~  138 (229)
                      .     +..|.+||+.+      +. ....+..+...+.. .|+|++..++..+.+    +.|.+||+.....  ...+.
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            4     56899999876      43 35556666665554 488888876655443    3699999876521  12333


Q ss_pred             ecce-eeEEEEEEcCCCCCEEEEEECCCc--EEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEee---CCCeE
Q psy4653         139 EGHT-HYVMQIVINPKDNNTFASASLDRT--VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGA---DDRLV  211 (229)
Q Consensus       139 ~~~~-~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s---~d~~i  211 (229)
                      ..+. ..+..+.+.+ ++.++++...|+.  |.+||+.+++.+..+..+...+..+++.+  ++. ++++.+   ..++|
T Consensus       331 ~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          331 PEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK--KDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             CCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT--TCSEEEEEEECSSCCCEE
T ss_pred             CCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCC--CCCEEEEEEeCCCCCCEE
Confidence            3222 2567778875 5668888888884  55667766776677777766677777743  333 443433   35789


Q ss_pred             EEEECCCCe
Q psy4653         212 KIWDYQNKT  220 (229)
Q Consensus       212 ~iwd~~~~~  220 (229)
                      .+||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999998876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.55  E-value=1.6e-11  Score=104.59  Aligned_cols=208  Identities=12%  Similarity=0.114  Sum_probs=146.8

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcC--CCCeEEEEEecCcCeEEEEEc----CCCCEEEEEeC-CCeEEEEECCC
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHE--TNQNVKSFEVCDLPVRAAKFV----PRKNWIVTGSD-DMQVCVFNYNT   88 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~sg~~-d~~i~iwd~~~   88 (229)
                      ..+..+.|+|+++++++++.|+.|.+||+.  +++.+..+.... .-..+.|+    |+|+++++++. ++++.++|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            356789999999999999999999999996  888877776544 35789999    69998877765 58999999999


Q ss_pred             cceEEEecc----------C-CCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC
Q psy4653          89 LERFHSFEA----------H-SDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        89 ~~~~~~~~~----------h-~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (229)
                      .+.+..+..          | ...+..+..+++++.+ +....+|+|.++|....................+.|+| ++.
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr  354 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHR  354 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSC
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCC
Confidence            888776542          2 2267889999887755 45566799999998654221111111222345677888 677


Q ss_pred             EEEEEE-CCCcEEEEeCCCCCceEEEec-----CCCceEEEEEEeCCCcCEEEEee-CCCeEEEEECCC-------CeEE
Q psy4653         157 TFASAS-LDRTVKVWQLGSASPNFTLEG-----HEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQN-------KTCV  222 (229)
Q Consensus       157 ~l~s~~-~d~~i~~wd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~-------~~~~  222 (229)
                      +++.+. .++.|.++|..+++.+..+.-     |...  ...|.+...+...+++. .+++|.++|..+       .+.+
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv  432 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL  432 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc--ceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence            766554 678999999998876665543     3221  22343333344555554 578999999987       6677


Q ss_pred             Eeecc
Q psy4653         223 QTLES  227 (229)
Q Consensus       223 ~~~~~  227 (229)
                      ++++.
T Consensus       433 ~~i~~  437 (567)
T 1qks_A          433 DSFPA  437 (567)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            87764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.54  E-value=6.2e-13  Score=105.57  Aligned_cols=195  Identities=9%  Similarity=0.012  Sum_probs=137.2

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ..|.++.|+|++..++..+.++.++.|   .++....+..+.....++.|++++++++++..++.|.+||.++++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            468889999999888777888999999   34445555555556789999999998888888999999999887654444


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEEEEEC------
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFASASL------  163 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------  163 (229)
                      ..+...+.+++++|++.++++...+    +.|.+||.+.... .....  .+...+..+.++| ++.++++...      
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBC
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECC-CCCEEEEeccccccCC
Confidence            3456789999999999988877766    6899999876532 21221  2334578889998 5777776553      


Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCC
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQN  218 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~  218 (229)
                      .+.|..+|..+++. ..+..+...+..++|.  +++. ++++.+.++.|.+||.++
T Consensus       161 ~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          161 LGGVYYVSPDFRTV-TPIIQNISVANGIALS--TDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CEEEEEECTTSCCE-EEEEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CceEEEEeCCCCEE-EEeecCCCcccceEEC--CCCCEEEEEeCCCCeEEEEEecC
Confidence            24555555544332 2232223346777774  4555 445556788999999964

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=1.8e-11  Score=104.20  Aligned_cols=199  Identities=9%  Similarity=0.053  Sum_probs=142.3

Q ss_pred             ccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CcceEEEeccCCCc
Q psy4653          24 HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN--TLERFHSFEAHSDY  101 (229)
Q Consensus        24 ~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~--~~~~~~~~~~h~~~  101 (229)
                      +|.+..+++...++.|.++|..+++.+..+.... ....+.|+|+++++.+++.|+.|.+||+.  +.+.+..+.... .
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~  241 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E  241 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence            3444455555678999999999999988887544 56789999999999999999999999995  777777776533 3


Q ss_pred             eeEEEEc----CCCCEEEEEe-CCCcEEEEecCCceeeeeeeec---------cee-eEEEEEEcCCCCCEEEEEECCCc
Q psy4653         102 VRCVAVH----PTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEG---------HTH-YVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus       102 i~~v~~~----~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~---------~~~-~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      -..++|+    |++++++++. .+++|.++|..+......+..+         |.. .+..+..++.....+++...++.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            5789999    6999877665 4599999998776443332211         112 35667777654556666667899


Q ss_pred             EEEEeCCCCCceE--EEecCCCceEEEEEEeCCCcCEEEE-eeCCCeEEEEECCCCeEEEeecc
Q psy4653         167 VKVWQLGSASPNF--TLEGHEKGVNCVDYYHGGDKPYLIS-GADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       167 i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      |.++|......+.  .+. .......+.|  .++++++++ +..+++|.++|.++++.+.+++.
T Consensus       322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~--~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEIS-AERFLHDGGL--DGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEEEETTCSSEEEEEEEE-CCSSEEEEEE--CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEecCCCccceeeeee-ccccccCceE--CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            9999987654322  222 2234566677  445666555 44688999999999998877754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=3.1e-11  Score=93.83  Aligned_cols=203  Identities=8%  Similarity=-0.013  Sum_probs=141.0

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      +..+...+.++++.|++..+++...++.|.+||.. ++.. .+.  .....+.++.+.+++++.++...++.|..||.+.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC
Confidence            44455689999999999977776668999999998 5543 332  2345689999999999888877788899999762


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ......+......+.++++.+++.++++...++.|.+||. ...............+..+.+.+ ++.++++...++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEE
Confidence            2111222224457889999999988888877889999998 33222222222334577888887 567777766778999


Q ss_pred             EEeCCCCCceEE-EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         169 VWQLGSASPNFT-LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       169 ~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      .||. +++.... +......+..+++.  +++.+.++...++.|..||. +++.
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKG--NDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEEC--CCCCEEEEccCCceEEEECC-CCcE
Confidence            9998 5443321 22334456777773  44556666667889999999 6553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=9.3e-11  Score=91.08  Aligned_cols=198  Identities=7%  Similarity=-0.005  Sum_probs=137.6

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      +...+.++++.|++..+++...++.|..||.. ++. ..+..  ....+..+.+.+++++.++...++.|..||. +++.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            34678999999999877777678999999986 333 33332  3346889999999998888777889999998 4443


Q ss_pred             EE-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653          92 FH-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus        92 ~~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                      .. ....+...+..+++.+++.++++...++.|..||. ++.............+..+.+.+ ++.++++...++.|..|
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRI  209 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEE
Confidence            22 22334456899999999988887777889999998 43222211222334567888887 56777776678899999


Q ss_pred             eCCCCCceE-EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         171 QLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       171 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      |. ++.... .+..+...+.++++.  +++.++++...++.|..||. +++
T Consensus       210 ~~-~g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          210 TT-SGEITEFKIPTPNARPHAITAG--AGIDLWFTEWGANKIGRLTS-NNI  256 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEEET-TTE
T ss_pred             CC-CCcEEEEECCCCCCCceeEEEC--CCCCEEEeccCCceEEEECC-CCc
Confidence            98 554322 123334567778774  34556666657889999998 444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.49  E-value=2.9e-12  Score=111.87  Aligned_cols=197  Identities=8%  Similarity=-0.057  Sum_probs=131.6

Q ss_pred             EEEEEccCCCeEEEEEecCe-------------EEEEEcCCCCe--EEEEEe--cCcCeEEEEEcCCCCEEEEEeCCC--
Q psy4653          19 KCCDLHPTEPWMLASLYNGH-------------VHVWNHETNQN--VKSFEV--CDLPVRAAKFVPRKNWIVTGSDDM--   79 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~-------------v~~wd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~--   79 (229)
                      ..++|+||++.|+.++.|..             |.+|++.+++.  ...+..  +...+..+.|+|+|++|+.++.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            68899999999999988776             99999998863  233332  234688999999999988877665  


Q ss_pred             --eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEe---CCCcEEEEecCCcee--eeeeeecc-eeeEEEEEEc
Q psy4653          80 --QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSS---DDMLIKLWNWEKAWA--CQQVFEGH-THYVMQIVIN  151 (229)
Q Consensus        80 --~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~---~d~~v~lwd~~~~~~--~~~~~~~~-~~~v~~~~~~  151 (229)
                        .|.+|+..+++ ...+..+.+.+....++ ++.+++.+.   .++.|.+||+.....  ...++..+ ...+..+.++
T Consensus       251 ~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKD-FRLLVKGVGAKYEVHAW-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEEECTTCSS-CEEEEECSSCCEEEEEE-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEEcCCCCc-eEEeecCCCceEEEEec-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence              67777665543 34455566666666664 444555544   258899999876431  23333333 3456677776


Q ss_pred             CCCCCEEEEEECCCcEEEEeCC-CCCceEEEecC-CCceEEEEEEeCCCcCEEE-Eee---CCCeEEEEECCCCeE
Q psy4653         152 PKDNNTFASASLDRTVKVWQLG-SASPNFTLEGH-EKGVNCVDYYHGGDKPYLI-SGA---DDRLVKIWDYQNKTC  221 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~-s~s---~d~~i~iwd~~~~~~  221 (229)
                        ++.++++...|+..++|.+. .+.....+..+ ...+..+++.+  ++..++ +.+   ..++|.+||+.+++.
T Consensus       329 --~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          329 --GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE--DLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             --TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT--TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             --CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC--CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence              46788899999998888664 34444555544 44566666643  343343 333   457899999988763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=3.3e-11  Score=98.83  Aligned_cols=199  Identities=11%  Similarity=-0.006  Sum_probs=137.8

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFH   93 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~   93 (229)
                      .....++|+|++.++++...++.|++||..+++..........+ . +.|+++++.|+++..++  .|..++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            35789999999997777777899999999987765554433333 3 99999999988888766  78888876554333


Q ss_pred             Ee---cc-CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee----eecceeeE-E-EEEEcCCCCCEEEEEEC
Q psy4653          94 SF---EA-HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV----FEGHTHYV-M-QIVINPKDNNTFASASL  163 (229)
Q Consensus        94 ~~---~~-h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~----~~~~~~~v-~-~~~~~~~~~~~l~s~~~  163 (229)
                      .+   .. ......+++++|++..|+.+..++.|+.||...... ...    ..++.... . .++++|.++.++++...
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            33   12 345678999999555555577788999999875532 111    11222222 2 78899866777888788


Q ss_pred             CCcEEEEeCCCCCceEEEecCC---------------CceEEEEEEeCCCcCEEEEee-CCCeEEEEECCCCeE
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHE---------------KGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTC  221 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~---------------~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~  221 (229)
                      +++|+.|+....  ...+.++.               .....+++.  +++.++++-+ .++.|+.||..++..
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d--~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD--EDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC--TTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe--CCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            899999997643  33333322               235677774  4556777877 899999999877764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=6.4e-11  Score=92.89  Aligned_cols=199  Identities=9%  Similarity=0.068  Sum_probs=134.9

Q ss_pred             CCCceEEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEE-EEec----CcCeEEEEEcCCCCEEEEEeCC---------
Q psy4653          14 RSDRVKCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKS-FEVC----DLPVRAAKFVPRKNWIVTGSDD---------   78 (229)
Q Consensus        14 ~~~~v~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~----~~~v~~~~~~~~~~~l~sg~~d---------   78 (229)
                      +...+.++.++|+ +..+ ++...+.|.+||.. ++.... ....    ...+..+.+.+++++.++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLF-VADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEE-EEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEE-EEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4467899999999 6544 44445589999998 665433 2211    1347899999999988777655         


Q ss_pred             ------CeEEEEECCCcceEEEeccCCCceeEEEEc----CCCCEEE-EEeCCCcEEEEecC-Ccee----eeeeeecce
Q psy4653          79 ------MQVCVFNYNTLERFHSFEAHSDYVRCVAVH----PTQPFLL-TSSDDMLIKLWNWE-KAWA----CQQVFEGHT  142 (229)
Q Consensus        79 ------~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~----~~~~~~~-s~~~d~~v~lwd~~-~~~~----~~~~~~~~~  142 (229)
                            +.|..++.+ ++. ..+..+......++++    |+++.++ +...++.|.+||+. .+..    ....+.++.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cccCCCCeEEEECCC-CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence                  466677665 433 2222333456789999    9987654 54567899999975 2211    111222332


Q ss_pred             -eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECCCC
Q psy4653         143 -HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       143 -~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~  219 (229)
                       ..+..+++++ ++.++++...++.|.+||..+++.+..+..+...+.++++  .+++. ++++...++.|..|+....
T Consensus       225 ~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~--~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          225 EGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF--KPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE--CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE--CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence             4567788887 6788888778899999999867766667666667888888  44556 4555566789999998753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=2.7e-11  Score=95.06  Aligned_cols=204  Identities=8%  Similarity=0.021  Sum_probs=133.2

Q ss_pred             CCceEEEEEccCCCeEEE-------EEecCeEEEEEcCCCCeEEEEE----ecCcCeEEEEEcCC-CCEEEEEeCCCeEE
Q psy4653          15 SDRVKCCDLHPTEPWMLA-------SLYNGHVHVWNHETNQNVKSFE----VCDLPVRAAKFVPR-KNWIVTGSDDMQVC   82 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~-------~~~dg~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~sg~~d~~i~   82 (229)
                      -....+++|+|++..+++       +..++.|.+||..+++......    .....+.++.++++ ++++++.. ...|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            345689999999987777       5788999999998877643221    02346889999999 76555544 44788


Q ss_pred             EEECCCcceEEE-ecc----CCCceeEEEEcCCCCEEEEEeCC---------------CcEEEEecCCceeeeeeeecce
Q psy4653          83 VFNYNTLERFHS-FEA----HSDYVRCVAVHPTQPFLLTSSDD---------------MLIKLWNWEKAWACQQVFEGHT  142 (229)
Q Consensus        83 iwd~~~~~~~~~-~~~----h~~~i~~v~~~~~~~~~~s~~~d---------------~~v~lwd~~~~~~~~~~~~~~~  142 (229)
                      +||.+ ++.... ...    ....+.++++++++.++++...+               +.|..+|.. . ...... .+.
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~-~~~  171 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVD-TAF  171 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEE-EEE
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEEEec-cCC
Confidence            99988 554332 211    12357899999999888777654               567777764 2 222222 223


Q ss_pred             eeEEEEEEc----CCCCC-EEEEEECCCcEEEEeCC-CCC-----ceEEEecCC-CceEEEEEEeCCCcCEEEEeeCCCe
Q psy4653         143 HYVMQIVIN----PKDNN-TFASASLDRTVKVWQLG-SAS-----PNFTLEGHE-KGVNCVDYYHGGDKPYLISGADDRL  210 (229)
Q Consensus       143 ~~v~~~~~~----~~~~~-~l~s~~~d~~i~~wd~~-~~~-----~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~~  210 (229)
                      .....++++    | ++. ++++...++.|.+||.. .+.     ....+..+. .....+++.  .++.++++...++.
T Consensus       172 ~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d--~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          172 QFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD--EDNNLLVANWGSSH  248 (314)
T ss_dssp             SSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB--TTCCEEEEEETTTE
T ss_pred             CCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC--CCCCEEEEEcCCCE
Confidence            345677787    7 454 45555678899999976 332     112223332 446667764  45667777778899


Q ss_pred             EEEEECCCCeEEEeec
Q psy4653         211 VKIWDYQNKTCVQTLE  226 (229)
Q Consensus       211 i~iwd~~~~~~~~~~~  226 (229)
                      |.+||.++++.+..+.
T Consensus       249 i~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             EEEECTTCBSCSEEEE
T ss_pred             EEEEcCCCCcEeEEEe
Confidence            9999998666554443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.47  E-value=2.2e-10  Score=89.71  Aligned_cols=204  Identities=12%  Similarity=0.121  Sum_probs=132.9

Q ss_pred             ceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          17 RVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        17 ~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      =-.+..|+|++. .+++...++.|..||..+++. ..+. ....+.++.+.++++++++ . +..|.+||.++++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            346888999655 555556789999999998765 3333 3457899999999996555 3 567999999876543222


Q ss_pred             cc----CCCceeEEEEcCCCCEEEEEeCC---------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC-EEEEE
Q psy4653          96 EA----HSDYVRCVAVHPTQPFLLTSSDD---------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFASA  161 (229)
Q Consensus        96 ~~----h~~~i~~v~~~~~~~~~~s~~~d---------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~  161 (229)
                      ..    ....++.++++|++.++++...+         ..-.||.+......... .........++|+| ++. ++++.
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-~~~~~~pngi~~sp-dg~~lyv~~  167 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-FDQVDISNGLDWSL-DHKIFYYID  167 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-EEEESBEEEEEECT-TSCEEEEEE
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-eeccccccceEEcC-CCCEEEEec
Confidence            11    12357889999999977755322         23345554332222222 22333457889998 455 55667


Q ss_pred             ECCCcEEEEeCC--CCCce-----EEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         162 SLDRTVKVWQLG--SASPN-----FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       162 ~~d~~i~~wd~~--~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +.++.|.+||+.  ++...     ..+..+......+++.  .++++.++...++.|..||..+++.+.++..+
T Consensus       168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d--~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID--AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB--TTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC--CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            778899999973  44321     1122223445667763  45567777778889999999999888877643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.46  E-value=2.5e-14  Score=115.96  Aligned_cols=188  Identities=11%  Similarity=0.073  Sum_probs=111.5

Q ss_pred             CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-cee-
Q psy4653          26 TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-YVR-  103 (229)
Q Consensus        26 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~-  103 (229)
                      ++..+++++.||.|..||..+|+.+..+..  .++.+..+..++..+++++.|+.|..||.++++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            467899999999999999999999988876  4555666667787888889999999999988887666543321 111 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec
Q psy4653         104 CVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG  183 (229)
Q Consensus       104 ~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  183 (229)
                      +..+. .+..+++++.|+.|+.||.+++... ..+..+.    .....| ++..+++++.|+.|+.||.++++.++.+..
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQ-QTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEE-EEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence            11111 3445677788999999999876432 2232222    123345 567888889999999999999988777653


Q ss_pred             CCCceEEEEEEeCCC---cCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         184 HEKGVNCVDYYHGGD---KPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       184 h~~~v~~~~~~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +.  .....+  .++   ...++.++.||.|..||.++++.+-+.+
T Consensus       159 ~~--~~~~~~--~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          159 FD--YAASLP--EDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EE--ECCBCC--CCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             cc--ccCccc--cCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            21  111112  111   1357778999999999999998765543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.44  E-value=4e-11  Score=104.69  Aligned_cols=207  Identities=14%  Similarity=0.143  Sum_probs=131.1

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEe-----cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC-------
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLY-----NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM-------   79 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~-----dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~-------   79 (229)
                      .+|+..+..++||||++.|+.+..     ...|++||+.+++.+... ........+.|+ +++.|+.++.+.       
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            456678999999999998886542     247999999999865431 111113567899 999888887773       


Q ss_pred             ------eEEEEECCCcc----eEEEecc-CCCceeEEEEcCCCCEEE-EEeC---CCcEEEEecCCceeeeeeeecceee
Q psy4653          80 ------QVCVFNYNTLE----RFHSFEA-HSDYVRCVAVHPTQPFLL-TSSD---DMLIKLWNWEKAWACQQVFEGHTHY  144 (229)
Q Consensus        80 ------~i~iwd~~~~~----~~~~~~~-h~~~i~~v~~~~~~~~~~-s~~~---d~~v~lwd~~~~~~~~~~~~~~~~~  144 (229)
                            +|.+|++.+..    .+..... |...+..+.|+|++++++ +.+.   +..|+++|+.........+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                  48999987654    2332333 445678899999999774 3332   3589999987653223333444444


Q ss_pred             EEEEEEcCCCCCEEEEEECC---CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCC--eEEEEECC
Q psy4653         145 VMQIVINPKDNNTFASASLD---RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDR--LVKIWDYQ  217 (229)
Q Consensus       145 v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--~i~iwd~~  217 (229)
                      .... +++..+.+++....|   +.|..+|+.++..  ...+..|...+.  .|.+.++ .++++...++  .|++||+.
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~-~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG-YLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT-EEEEEEEETTEEEEEEECTT
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC-EEEEEEEECCeeEEEEEECC
Confidence            4333 334334444454443   6799999987654  345666665554  5554433 2444445565  58889987


Q ss_pred             CCeEEEee
Q psy4653         218 NKTCVQTL  225 (229)
Q Consensus       218 ~~~~~~~~  225 (229)
                      .+. ...+
T Consensus       359 g~~-~~~l  365 (693)
T 3iuj_A          359 GKR-VREV  365 (693)
T ss_dssp             SCE-EEEE
T ss_pred             CCe-eEEe
Confidence            554 3444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=2.9e-10  Score=89.08  Aligned_cols=178  Identities=8%  Similarity=0.057  Sum_probs=120.7

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec----CcCeEEEEEcCCCCEEEEEeC---------CCe
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSD---------DMQ   80 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~~---------d~~   80 (229)
                      ....+.+++++|++.++++ . ++.|.+||..+++........    ...+..+.+.|+|++.++...         ...
T Consensus        52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            3467999999999994444 4 678999999987654333221    123788999999997665432         123


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecC--Cceee-eee---eecceeeEEEEEEcCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWE--KAWAC-QQV---FEGHTHYVMQIVINPK  153 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~--~~~~~-~~~---~~~~~~~v~~~~~~~~  153 (229)
                      ..+|.+.....+..+..+....+.++|+|+++.+ ++.+.++.|.+||+.  .+... .+.   +..+......+.+.+ 
T Consensus       130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-  208 (297)
T 3g4e_A          130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-  208 (297)
T ss_dssp             EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-
T ss_pred             cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-
Confidence            4566554322333333333456799999999866 556667899999973  32111 112   222334567788887 


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEE
Q psy4653         154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  194 (229)
                      ++.+.++...++.|..||..+++.+..+..+...+.+++|.
T Consensus       209 ~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          209 EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            57788887788899999998888888887776678899985

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.41  E-value=8.1e-10  Score=85.76  Aligned_cols=199  Identities=7%  Similarity=-0.049  Sum_probs=137.9

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      ......++.+.+++...++...++.|.+||.. ++... +..  ....+..+.+.+++++.++...++.|..+|.+ ++.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            34578999999999877777778999999988 55433 322  22468899999999988877778889999987 443


Q ss_pred             E-EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653          92 F-HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus        92 ~-~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                      . .........+.++++.+++.++++...++.|..+|.. +.............+..+.+.+ ++.++++...++.|..+
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence            2 2222234568899999999988887778899999986 3222222222334577888887 56777776667889999


Q ss_pred             eCCCCCceE-EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         171 QLGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       171 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      |. .++... ....+...+..+++.  +++.+.++....+.|..||. +++.
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSG--NDGALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEEC--TTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEEC--CCCCEEEEccCCCEEEEEcC-CCcE
Confidence            98 443322 222333456777774  35556666666778999998 4443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.40  E-value=9.3e-10  Score=85.41  Aligned_cols=195  Identities=5%  Similarity=-0.021  Sum_probs=135.2

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ...+.++++.+++..+++...++.|..+|.. ++.. .+..  ....+..+.+.+++++.++...++.|..+|.+ ++..
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            3578999999999877776668899999988 5543 3332  23568899999999988887778889999987 4443


Q ss_pred             E-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          93 H-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        93 ~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      . .+........++++.+++.++++...++.|..+|.. ..............+..+.+.+ ++.++++....+.|..+|
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEEC
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEc
Confidence            2 223334578899999999977777667899999983 3222222223334577888887 567777666677899999


Q ss_pred             CCCCCceE-EEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         172 LGSASPNF-TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       172 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      . .+.... .+..+...+.++++.  +++.+.++...++.|..||..
T Consensus       216 ~-~g~~~~~~~~~~~~~~~~i~~d--~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          216 T-TGEISEYDIPTPNARPHAITAG--KNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT
T ss_pred             C-CCcEEEEECCCCCCCceEEEEC--CCCCEEEeccCCCeEEEECCC
Confidence            8 333222 223334557777774  345566666667899999984

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=3.2e-11  Score=97.79  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=105.3

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      .+.. |..++|  ++.+|+++ .++.|++||+.+.........++.++.++.+.+..  +++++.||.+.+||+..+...
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~  159 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK  159 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc
Confidence            4556 999999  88999988 88999999998877666666777788888877653  888899999999999876653


Q ss_pred             EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee-eeee------e---cceeeEEEEEEcCCCCCEEEE
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC-QQVF------E---GHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      .    +...|+|++|||.|  ++.|..||++++|+.+..... ...+      .   +|...|..+.|.+ ++..+++
T Consensus       160 ~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          160 Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             E----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            2    44689999999999  678899999999987655311 2233      2   3667899999987 4555554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=2.3e-10  Score=91.02  Aligned_cols=196  Identities=10%  Similarity=-0.027  Sum_probs=132.7

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      +....+.+. .+...++...++.|.+||..+++.+..+.. ......+.+++++++.++...++.|.+||.++++....+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            446777774 444555555689999999999999888753 346788999888855555447899999999998877665


Q ss_pred             ccCC-----CceeEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-----
Q psy4653          96 EAHS-----DYVRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-----  164 (229)
Q Consensus        96 ~~h~-----~~i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----  164 (229)
                      ....     .....+++ .++..+++.. .++.|.++|+.+......+..+  .....+.++| ++.+++++..+     
T Consensus       122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~-dG~l~v~~~~~~~~~~  197 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDK-YNKMWTITDGGYEGSP  197 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECT-TSEEEEEBCCBCTTCS
T ss_pred             EcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcC-CCCEEEEECCCccCCc
Confidence            5332     14456777 3444444443 4889999999876443333222  2235677777 56777766554     


Q ss_pred             -----CcEEEEeCCCCCceEEEecC-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         165 -----RTVKVWQLGSASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       165 -----~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                           +.|.++|..+.+....+.-. ......+++.  +++..|..+..  .|.+||..+++.
T Consensus       198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~--~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN--GTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC--TTSCEEEEESS--SEEEEETTCSSC
T ss_pred             cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe--cCCCEEEEEcc--EEEEEECCCCce
Confidence                 78999999887766555432 2356778884  34455655444  899999988765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=2.4e-09  Score=86.76  Aligned_cols=196  Identities=10%  Similarity=-0.015  Sum_probs=126.8

Q ss_pred             EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEec-------CcCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653          20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVC-------DLPVRAAKFVPRKNWIVTGSD--DMQ   80 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~--d~~   80 (229)
                      .+.++||++.++++.          .++.|.+||..+.+.+..+...       ...-..+.|+|+|++|++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            889999999999886          3688999999998887766542       122357899999999998874  478


Q ss_pred             EEEEECCCcceEEE-eccCCCceeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeee-----------------------
Q psy4653          81 VCVFNYNTLERFHS-FEAHSDYVRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQ-----------------------  135 (229)
Q Consensus        81 i~iwd~~~~~~~~~-~~~h~~~i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~-----------------------  135 (229)
                      |.++| ++++.+.. +....    |+.+.|+++ .+++.+.|+++.++|. .+....                       
T Consensus       150 v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99888776 54321    233344432 3344455555555555 221110                       


Q ss_pred             --------------------------eeeec----------ceeeEEEEEEcCCCCCEEEEEEC----------CCcEEE
Q psy4653         136 --------------------------QVFEG----------HTHYVMQIVINPKDNNTFASASL----------DRTVKV  169 (229)
Q Consensus       136 --------------------------~~~~~----------~~~~v~~~~~~~~~~~~l~s~~~----------d~~i~~  169 (229)
                                                ..+.-          .......+.++|. +..+..+..          ++.|.+
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d-~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS-SDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC-CCEEEEEeccCCcccccCCCCeEEE
Confidence                                      00000          0001112456663 444443322          357999


Q ss_pred             EeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECCCCeEEEee
Q psy4653         170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~~  225 (229)
                      .|..+.+.+..+... .....++|.+  +++ +++++. .++.|.++|..+++.++++
T Consensus       303 ID~~t~~vv~~i~~g-~~p~~i~~s~--Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          303 VTGLVGQTSSQISLG-HDVDAISVAQ--DGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EECCCCEEEEEEECC-CCcCeEEECC--CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            999988887777542 2467788854  555 666666 5899999999999999883

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.36  E-value=9.5e-11  Score=103.01  Aligned_cols=199  Identities=15%  Similarity=0.040  Sum_probs=132.1

Q ss_pred             eEEEEEccCCCeEEEEEecCe--------------EEEEEcCCCCe--EEEEEecC--cCeEEEEEcCCCCEEEEEeCCC
Q psy4653          18 VKCCDLHPTEPWMLASLYNGH--------------VHVWNHETNQN--VKSFEVCD--LPVRAAKFVPRKNWIVTGSDDM   79 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~--------------v~~wd~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d~   79 (229)
                      +..++|+|| +.|+.+..++.              |.+|++.+++.  ...+....  ..+..+.|+|+|++|+..+.++
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            357899999 98998886654              89999988763  23333322  2478999999999888777543


Q ss_pred             -----eEEEEECCCc--ceEEEeccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCc-eeeeeeeecceeeEEE
Q psy4653          80 -----QVCVFNYNTL--ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKA-WACQQVFEGHTHYVMQ  147 (229)
Q Consensus        80 -----~i~iwd~~~~--~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~-~~~~~~~~~~~~~v~~  147 (229)
                           .|.+||++++  +....+..+.+.+.... +|++..|+..+.+    +.|.+||+... .....++..+...+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                 8999998776  31455555555555543 4888877766653    45999998764 2334455555555656


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCC-CCCceEEEecC-CCceEEEEEEeCCCcCEEEEee---CCCeEEEEECCCCeE
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLG-SASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGA---DDRLVKIWDYQNKTC  221 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~  221 (229)
                      +.+.  ++.++++...|+..++|.+. .+.....+..+ ...+..+++.+.+ ..++++.+   ..++|.+||+.+++.
T Consensus       369 ~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~-~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          369 VGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD-RHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC-SCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC-CEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            6665  45688888899988888654 34444555542 4557777775432 23443333   458899999998863

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.34  E-value=3e-09  Score=84.49  Aligned_cols=197  Identities=11%  Similarity=0.084  Sum_probs=125.0

Q ss_pred             eEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653          18 VKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE   96 (229)
Q Consensus        18 v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~   96 (229)
                      ..+..|+|++. .+++...++.|..||..+++.. .+. ....+.++.+.++++++++. .+ .|.+||.++++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            46789999855 4555567899999999987543 333 34578999999999877654 44 48999988776432221


Q ss_pred             c----CCCceeEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE-EEEEECCC
Q psy4653          97 A----HSDYVRCVAVHPTQPFLLTSSD------DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT-FASASLDR  165 (229)
Q Consensus        97 ~----h~~~i~~v~~~~~~~~~~s~~~------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~  165 (229)
                      .    ....++.++++|++.++++...      .+.|..++  .+ ...... ........+.|+| ++.. +++...++
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~-~~~~~~~~i~~s~-dg~~lyv~~~~~~  201 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLF-ADISIPNSICFSP-DGTTGYFVDTKVN  201 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEE-EEESSEEEEEECT-TSCEEEEEETTTC
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEee-CCCcccCCeEEcC-CCCEEEEEECCCC
Confidence            1    1235889999999997765542      23455555  22 222222 2223456788988 5654 45556678


Q ss_pred             cEEEEeCC--CC-Cc--eEE---EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         166 TVKVWQLG--SA-SP--NFT---LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       166 ~i~~wd~~--~~-~~--~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .|.+||+.  ++ ..  ...   +.........+.+  ..++.+.++...++.|..||. +++.+..+.
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~--d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC--DAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE--CTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEE--CCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            99999985  44 21  111   2222334555665  445566666667789999998 466666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=2.2e-09  Score=88.02  Aligned_cols=189  Identities=11%  Similarity=0.082  Sum_probs=126.0

Q ss_pred             EEEccCCCeEEEEEecC--eEEEEEcCCCCeEEEEE---e-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          21 CDLHPTEPWMLASLYNG--HVHVWNHETNQNVKSFE---V-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg--~v~~wd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      ++|+|++..|+++..++  .|.+++..++.....+.   . ......++.++|++..|..+..++.|..||.+++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999999988765  89999988766544431   1 234578899999555555577788999999987653222


Q ss_pred             ----eccCCCce--eEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecc---------------eeeEEEEEEcC
Q psy4653          95 ----FEAHSDYV--RCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGH---------------THYVMQIVINP  152 (229)
Q Consensus        95 ----~~~h~~~i--~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~---------------~~~v~~~~~~~  152 (229)
                          ..++...-  ..++|+|+ +.++++-...+.|+.|+....   ...+.++               -.....+++++
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence                22222222  39999995 556667777899999997643   1222222               12367889988


Q ss_pred             CCCCEEEEEE-CCCcEEEEeCCCCCceEEEecC---------------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         153 KDNNTFASAS-LDRTVKVWQLGSASPNFTLEGH---------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       153 ~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                       ++.++++-. .+++|+.|++..+. +..+.++               -.....+++.  +++.++++-..++.|+.+++
T Consensus       333 -dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd--~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          333 -DGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYD--GEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -TCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEEC--SSSEEEEEESTTCEEEEEEE
T ss_pred             -CCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEc--CCCCEEEEECCCCeEEEEEe
Confidence             577888888 89999999976654 3334333               1235566763  34556666677777776654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=1.2e-08  Score=80.95  Aligned_cols=186  Identities=10%  Similarity=0.053  Sum_probs=118.8

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec----CcCeEEEEEcCCCCEEEEEeC------CCeEEEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSD------DMQVCVF   84 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~~------d~~i~iw   84 (229)
                      ...+.++.++|++.+++++  ...|.+||..+++........    ...+..+.++|+|++.++...      .+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            4579999999999876654  445999999888764332211    124788999999997665432      2345555


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecC--Cc-eee-eeee---ecceeeEEEEEEcCCCCC
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWE--KA-WAC-QQVF---EGHTHYVMQIVINPKDNN  156 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~--~~-~~~-~~~~---~~~~~~v~~~~~~~~~~~  156 (229)
                      +  +++ +..+..+....+.++|+|+++.++ +.+.++.|.+||+.  .+ ... ...+   .........+.+.+ ++.
T Consensus       167 ~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~  242 (326)
T 2ghs_A          167 A--KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGH  242 (326)
T ss_dssp             E--TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSC
T ss_pred             e--CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCC
Confidence            5  333 333333334567999999998664 55567899999985  33 110 1122   12233456778876 577


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEE-EEeeCC
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYL-ISGADD  208 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~d  208 (229)
                      +.++...++.|..||. .++.+..+..+...+.+++|. .++...| ++...+
T Consensus       243 lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~-g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          243 IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI-GPDASRLLVTSARE  293 (326)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE-STTSCEEEEEEBCT
T ss_pred             EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe-cCCCCEEEEEecCC
Confidence            7777667789999998 566666676666678888885 1333334 444443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=5.7e-09  Score=85.66  Aligned_cols=203  Identities=9%  Similarity=-0.008  Sum_probs=128.1

Q ss_pred             EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEec-------CcCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653          20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVC-------DLPVRAAKFVPRKNWIVTGSD--DMQ   80 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~--d~~   80 (229)
                      .+.++||++.++++.          .++.|.++|..+.+.+..+...       ...-..+.|+|+|++|.++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999998886          4679999999999998887643       123456889999999988874  578


Q ss_pred             EEEEECCCcceEEEeccCCC-------ceeEEEEcCCCCEEEEEeC----------------------------------
Q psy4653          81 VCVFNYNTLERFHSFEAHSD-------YVRCVAVHPTQPFLLTSSD----------------------------------  119 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~-------~i~~v~~~~~~~~~~s~~~----------------------------------  119 (229)
                      |.+.|..+++.+..+.....       .-..+.+++++++++....                                  
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999887766643110       0011334444443332222                                  


Q ss_pred             ---CCcEEEEecCCcee-eeeeee---------c-ceeeEEEEEEcCCCCCEEEEEE---------CCCcEEEEeCCCCC
Q psy4653         120 ---DMLIKLWNWEKAWA-CQQVFE---------G-HTHYVMQIVINPKDNNTFASAS---------LDRTVKVWQLGSAS  176 (229)
Q Consensus       120 ---d~~v~lwd~~~~~~-~~~~~~---------~-~~~~v~~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~  176 (229)
                         .+.|.+.|+..... ....+.         + .......+.++|....++++..         .++.|.+.|..+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence               33333333321100 000000         0 0000112466764333444433         13579999999998


Q ss_pred             ceEEEecCCCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECCCCeEEEee
Q psy4653         177 PNFTLEGHEKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       177 ~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~~  225 (229)
                      .+..+.... ....+.|.  ++++ +++++. .++.|.++|..+++.++++
T Consensus       362 vv~~I~vg~-~P~gia~s--pDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          362 RINKIELGH-EIDSINVS--QDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEEEE-EECEEEEC--CSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCC-CcCeEEEc--cCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            888775422 36677884  3555 677766 6999999999999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.25  E-value=2.4e-08  Score=80.80  Aligned_cols=144  Identities=15%  Similarity=0.022  Sum_probs=96.1

Q ss_pred             EEccCCCeEEEEEe--cC---eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCeEEEEEC
Q psy4653          22 DLHPTEPWMLASLY--NG---HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQVCVFNY   86 (229)
Q Consensus        22 ~~~p~~~~l~~~~~--dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~i~iwd~   86 (229)
                      -..|+++.+++...  .+   .|.++|..+++.+..+.....+  .+.++|+++.|.++.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34477877777653  33   8899999999988877655444  899999999988886          3678999999


Q ss_pred             CCcceEEEeccC-------CCceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCE
Q psy4653          87 NTLERFHSFEAH-------SDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNT  157 (229)
Q Consensus        87 ~~~~~~~~~~~h-------~~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (229)
                      .+.+.+..+...       ...-..+.|+|++++++.+..  +++|.++| .........+... ..   +.+.|.....
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~  179 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPST  179 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCce
Confidence            988877665432       122347999999999988764  57899999 7764433302211 11   2222333344


Q ss_pred             EEEEECCCcEEEEeC
Q psy4653         158 FASASLDRTVKVWQL  172 (229)
Q Consensus       158 l~s~~~d~~i~~wd~  172 (229)
                      +++.+.|+++.++|.
T Consensus       180 ~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH  194 (373)
T ss_pred             EEEEcCCCCEEEEEC
Confidence            455555666665555

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.25  E-value=1.8e-09  Score=87.27  Aligned_cols=192  Identities=15%  Similarity=0.054  Sum_probs=132.5

Q ss_pred             EEEEccCCCeEEEEEe-----cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCeEEEE
Q psy4653          20 CCDLHPTEPWMLASLY-----NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQVCVF   84 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~-----dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~i~iw   84 (229)
                      .....|++..+++...     ++.|.+.|..+++.+..+.....+ . +.++|+|+.|.+++          .++.|.+|
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            3456799998888865     689999999999999998877666 4 99999999887765          35679999


Q ss_pred             ECCCcceEEEeccCC-------CceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCC
Q psy4653          85 NYNTLERFHSFEAHS-------DYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        85 d~~~~~~~~~~~~h~-------~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (229)
                      |..+.+.+..+....       ..-..+.|+|++++++.+..  ++.|.++|+........+-...   .  ..+.|...
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~--~~~~P~g~  189 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C--YHIFPTAP  189 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEET
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---c--ceeecCCC
Confidence            999998887764321       13457999999998887764  6899999998875443332111   1  11224455


Q ss_pred             CEEEEEECCCcEEEEeCCC-CCceEEEecCC----CceE-EEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         156 NTFASASLDRTVKVWQLGS-ASPNFTLEGHE----KGVN-CVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~----~~v~-~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      ..+++.+.||++.+.++.. ++.......+.    ..+. ...|. ..++.+++ .+.+|.|.+.|..++.
T Consensus       190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~~dG~~~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-QKAGRLVW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-TTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred             ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE-cCCCcEEE-EeCCCEEEEEECCCCc
Confidence            6788889999999999876 44322121111    1121 12333 23444444 5668999999997653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.21  E-value=1.7e-09  Score=87.43  Aligned_cols=204  Identities=12%  Similarity=0.083  Sum_probs=128.2

Q ss_pred             EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEecC-------cCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653          20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVCD-------LPVRAAKFVPRKNWIVTGSD--DMQ   80 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~sg~~--d~~   80 (229)
                      .+.++|+++.++++.          .++.|.+||..+.+.+..+....       ..-..+.|+|+|++|.++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999998875          36789999999999988876532       23567899999999888864  688


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc----eeeEE-EEEEcCCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH----THYVM-QIVINPKDN  155 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~----~~~v~-~~~~~~~~~  155 (229)
                      |.++|.++++.+..+....  . ...+....+.+++.+.||++.+.++............+    ..++. ...|.+.++
T Consensus       162 VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            9999999999888775321  1 12232334567788889999888886532221111111    11111 123433355


Q ss_pred             CEEEEEECCCcEEEEeCCCCCc--eEEEe---------c-CCCceEEEEEEeCCCcCEEEEee--------CCCeEEEEE
Q psy4653         156 NTFASASLDRTVKVWQLGSASP--NFTLE---------G-HEKGVNCVDYYHGGDKPYLISGA--------DDRLVKIWD  215 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~--~~~~~---------~-h~~~v~~~~~~~~~~~~~l~s~s--------~d~~i~iwd  215 (229)
                      .+++ .+.++++.+.|+.+...  ...+.         + .......+++.+.++.-|++...        ..+.|-+.|
T Consensus       239 ~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          239 RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            4444 56689999999976542  11111         0 11223345554332221232221        125799999


Q ss_pred             CCCCeEEEeecc
Q psy4653         216 YQNKTCVQTLES  227 (229)
Q Consensus       216 ~~~~~~~~~~~~  227 (229)
                      .++++.++++..
T Consensus       318 ~~t~kv~~~i~v  329 (386)
T 3sjl_D          318 AKTGERLAKFEM  329 (386)
T ss_dssp             TTTCCEEEEEEE
T ss_pred             CCCCeEEEEEEC
Confidence            999999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.20  E-value=1.8e-08  Score=79.09  Aligned_cols=198  Identities=8%  Similarity=0.005  Sum_probs=125.1

Q ss_pred             CCceEEEEEccCCC-eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          15 SDRVKCCDLHPTEP-WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        15 ~~~v~~~~~~p~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      ..-.....|+|+++ .++++..++.|..|+. +++ ...+......+..+.++++|+++++...++.|..|+.+ ++. .
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~  119 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-H  119 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-E
Confidence            34567889999998 5566667899999998 444 34555555678999999999977776667889999976 442 2


Q ss_pred             EeccC-----CCceeEEEEcCCCCEEEE----EeC-------------CCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653          94 SFEAH-----SDYVRCVAVHPTQPFLLT----SSD-------------DMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        94 ~~~~h-----~~~i~~v~~~~~~~~~~s----~~~-------------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                      .+..+     ...++.+++++++.+.++    |..             .+.|..+|...+. .....  .......++|+
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~--~~~~p~gl~~s  196 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMA--DLDHPNGLAFS  196 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE--EESSEEEEEEC
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEEEe--cCCCCcceEEc
Confidence            22111     234678999999998886    321             2467777764432 22222  33345678899


Q ss_pred             CCCCCEEEEEECC------CcEEEEeCCCCCceE---EE-ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         152 PKDNNTFASASLD------RTVKVWQLGSASPNF---TL-EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       152 ~~~~~~l~s~~~d------~~i~~wd~~~~~~~~---~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      | ++..|+.+...      +.|.+|++.... +.   .+ .........+.+  ..+++ |..+..+ .|.+||.. ++.
T Consensus       197 p-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~--d~~G~-lwv~~~~-gv~~~~~~-g~~  269 (305)
T 3dr2_A          197 P-DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCV--DRGGW-LWSSSGT-GVCVFDSD-GQL  269 (305)
T ss_dssp             T-TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEE--CTTSC-EEECCSS-EEEEECTT-SCE
T ss_pred             C-CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEE--CCCCC-EEEecCC-cEEEECCC-CCE
Confidence            8 56655555544      789999986543 21   11 111222344555  34555 4444444 49999984 556


Q ss_pred             EEeec
Q psy4653         222 VQTLE  226 (229)
Q Consensus       222 ~~~~~  226 (229)
                      +.++.
T Consensus       270 ~~~~~  274 (305)
T 3dr2_A          270 LGHIP  274 (305)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=1.2e-08  Score=88.99  Aligned_cols=188  Identities=10%  Similarity=0.065  Sum_probs=125.8

Q ss_pred             cCeEEEEEcCCCCeEEEEEecC-------------------------------cCeEEEEEcCCCCEEEEEeCCCe----
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCD-------------------------------LPVRAAKFVPRKNWIVTGSDDMQ----   80 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~sg~~d~~----   80 (229)
                      +|.|..||..+|+.+..+....                               .....+.+.|+++.+..++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            7899999999999988875311                               01135788998999999988764    


Q ss_pred             ---------------EEEEECCCcceEEEecc--CC-------CceeEEEEcCCCC---EEEEEeCCCcEEEEecCCcee
Q psy4653          81 ---------------VCVFNYNTLERFHSFEA--HS-------DYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKAWA  133 (229)
Q Consensus        81 ---------------i~iwd~~~~~~~~~~~~--h~-------~~i~~v~~~~~~~---~~~s~~~d~~v~lwd~~~~~~  133 (229)
                                     |..+|.++++.+..++.  |.       ..........++.   .++.++.+|.++++|.++++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           99999999998877654  21       1112223333454   688899999999999887754


Q ss_pred             eeeeeecc---------------------------eee-----------EEEEEEcCCCCCEEEEEEC------------
Q psy4653         134 CQQVFEGH---------------------------THY-----------VMQIVINPKDNNTFASASL------------  163 (229)
Q Consensus       134 ~~~~~~~~---------------------------~~~-----------v~~~~~~~~~~~~l~s~~~------------  163 (229)
                      +...-...                           ...           -..++++|.. .++.....            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeecccc
Confidence            32111000                           000           0114566643 44444321            


Q ss_pred             ---------------------------------CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCe
Q psy4653         164 ---------------------------------DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL  210 (229)
Q Consensus       164 ---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~  210 (229)
                                                       ++.|+.||+.+++.++.++.+... ..-.+...  +.+++.|+.||.
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~ta--gglvf~gt~dg~  497 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTA--GNLVFEGSADGR  497 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEET--TTEEEEECTTSE
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceEC--CCEEEEECCCCc
Confidence                                             478999999999999888765432 22233223  348889999999


Q ss_pred             EEEEECCCCeEEEeecc
Q psy4653         211 VKIWDYQNKTCVQTLES  227 (229)
Q Consensus       211 i~iwd~~~~~~~~~~~~  227 (229)
                      ++.||.++|+.+-+++.
T Consensus       498 l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          498 VIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCccceeeeC
Confidence            99999999999877654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=3.7e-09  Score=84.52  Aligned_cols=201  Identities=10%  Similarity=0.053  Sum_probs=126.5

Q ss_pred             CceEEEEEccCCCeEEEEE--ecCeEEEEEcCCCCeEEEEEe-------cCcCeEEEEEcCCCCEEEEEeC-----CCeE
Q psy4653          16 DRVKCCDLHPTEPWMLASL--YNGHVHVWNHETNQNVKSFEV-------CDLPVRAAKFVPRKNWIVTGSD-----DMQV   81 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~sg~~-----d~~i   81 (229)
                      .....++++|+++.+++..  .++.+.||.+.+++. ..|..       +-..+..+.+.+++++.++...     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5789999999999887753  234355666555543 33321       2246899999999887766544     5789


Q ss_pred             EEEECCCcceEEEeccC------CCceeEEEEcCCCC-EEEEEe---CCCcEEEEecCCceeeeeeeecc----------
Q psy4653          82 CVFNYNTLERFHSFEAH------SDYVRCVAVHPTQP-FLLTSS---DDMLIKLWNWEKAWACQQVFEGH----------  141 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h------~~~i~~v~~~~~~~-~~~s~~---~d~~v~lwd~~~~~~~~~~~~~~----------  141 (229)
                      .+||+++++.++.+...      ......+++++++. .+++..   .++.|.+||+..+.. .+...+|          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCcccccccce
Confidence            99999988866655432      23568999998654 445655   678999999875432 2222211          


Q ss_pred             -------------------eeeEEEEEEcCCCCCEEEEEECCC-cEEEEeCC---CCC-------ceEEEecCCCceEEE
Q psy4653         142 -------------------THYVMQIVINPKDNNTFASASLDR-TVKVWQLG---SAS-------PNFTLEGHEKGVNCV  191 (229)
Q Consensus       142 -------------------~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~---~~~-------~~~~~~~h~~~v~~~  191 (229)
                                         ...+..++++| ++..|..+..++ .+..++..   ...       ......++......+
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                               01257789998 667666666555 44444421   110       001122333334456


Q ss_pred             EEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         192 DYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       192 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      ++.  .++.++++...++.|.+||..+++.
T Consensus       254 a~d--~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          254 SID--KDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             EEC--TTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEC--CCCCEEEEccCCCeEEEEECCCCCE
Confidence            663  4567888888899999999955653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=9.1e-09  Score=82.19  Aligned_cols=196  Identities=9%  Similarity=-0.009  Sum_probs=125.9

Q ss_pred             cCCCceEEEEEccCCCeEEEEEe-----cCeEEEEEcCCCCeEEEEEecC------cCeEEEEEcCCCCE-EEEEe---C
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLY-----NGHVHVWNHETNQNVKSFEVCD------LPVRAAKFVPRKNW-IVTGS---D   77 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~-----dg~v~~wd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~-l~sg~---~   77 (229)
                      +|-..+..++++|++..+++...     ++.|.+||+.+++.+..+....      .....+.+.+++.. .++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45568999999999986666554     5899999999998777765421      23588999986544 45555   5


Q ss_pred             CCeEEEEECCCcceEEEeccCC-----------------------------CceeEEEEcCCCCEEEEEeCCC-cEEEEe
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHS-----------------------------DYVRCVAVHPTQPFLLTSSDDM-LIKLWN  127 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~-----------------------------~~i~~v~~~~~~~~~~s~~~d~-~v~lwd  127 (229)
                      ++.|.+||+.+++..+.+..|.                             ..+..++|+|+++.++.+..++ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            7889999998776655443321                             1357899999999877776655 454444


Q ss_pred             cC---Cce----eeee--eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCC
Q psy4653         128 WE---KAW----ACQQ--VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGG  197 (229)
Q Consensus       128 ~~---~~~----~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~  197 (229)
                      ..   ...    ....  ...++.+....+++++ ++.++++...++.|.+||..+++....... +......+++.  +
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~--~  300 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG--S  300 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC--T
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC--C
Confidence            21   100    0000  1112333445678887 688999888899999999844442222221 23346778874  4


Q ss_pred             CcCEEEEeeCCCeE
Q psy4653         198 DKPYLISGADDRLV  211 (229)
Q Consensus       198 ~~~~l~s~s~d~~i  211 (229)
                      ++.++++.+..+.+
T Consensus       301 ~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          301 DGYLYFDCNQLHHS  314 (343)
T ss_dssp             TSCEEEEECCGGGS
T ss_pred             CCcEEEEeCccccc
Confidence            55666666644443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.16  E-value=2.6e-09  Score=86.21  Aligned_cols=201  Identities=6%  Similarity=-0.051  Sum_probs=121.4

Q ss_pred             EEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEecC-------cCeEEEEEcCCCCEEEEEeC--CCe
Q psy4653          20 CCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVCD-------LPVRAAKFVPRKNWIVTGSD--DMQ   80 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~sg~~--d~~   80 (229)
                      .+.++|+++.++++.          .++.|.+||+.+++.+..+....       ..-..+.++|+|++|+++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999999986          37899999999999999887541       23467899999999998875  356


Q ss_pred             EEE--EECCCcceEEEeccC------------------CCceeEEEE--------------------------cCCCCEE
Q psy4653          81 VCV--FNYNTLERFHSFEAH------------------SDYVRCVAV--------------------------HPTQPFL  114 (229)
Q Consensus        81 i~i--wd~~~~~~~~~~~~h------------------~~~i~~v~~--------------------------~~~~~~~  114 (229)
                      +.+  +|..+   +..+...                  .+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  88865   2222110                  000111111                          1111222


Q ss_pred             EEEeCCCcEEEEecCCce-eeeeeee-------cce---eeEEEEEEcCCCCCEEE-EEE---C-----CCcEEEEeCCC
Q psy4653         115 LTSSDDMLIKLWNWEKAW-ACQQVFE-------GHT---HYVMQIVINPKDNNTFA-SAS---L-----DRTVKVWQLGS  174 (229)
Q Consensus       115 ~s~~~d~~v~lwd~~~~~-~~~~~~~-------~~~---~~v~~~~~~~~~~~~l~-s~~---~-----d~~i~~wd~~~  174 (229)
                      +..+. +.|.+.|+.... .....+.       .+.   .....+.++|. +..+. +..   .     +..+.++|+.+
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d-g~~lyV~~~~~~~~~~~~~~~~~ViD~~t  303 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN-TDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT-TTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC-CCEEEEEeccccCcccccCCCEEEEECCC
Confidence            22222 445555553211 1111110       000   00011567774 44444 433   1     23566999999


Q ss_pred             CCceEEEecCCCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECCCCeEEEeeccC
Q psy4653         175 ASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       175 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .+.+..+.... ....+.|.+  ++. ++++.. .++.|.++|+.+++.+++++.+
T Consensus       304 ~~vv~~i~vg~-~p~gi~~s~--Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          304 GQTSGPISNGH-DSDAIIAAQ--DGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             CCEEECCEEEE-EECEEEECC--SSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CeEEEEEECCC-CcceEEECC--CCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            88777665432 466778754  443 566666 6999999999999999998754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=1.6e-08  Score=79.35  Aligned_cols=192  Identities=10%  Similarity=-0.010  Sum_probs=119.0

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEE----EeC-----
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVT----GSD-----   77 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s----g~~-----   77 (229)
                      +..+...+..+.++|+++++++...++.|.+||.. ++.........    ..+..+.+.++|++.++    |..     
T Consensus        81 ~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~  159 (305)
T 3dr2_A           81 LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG  159 (305)
T ss_dssp             EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred             EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence            44455678999999999866555566899999986 55422221111    23567999999998886    442     


Q ss_pred             --------CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC------CcEEEEecCCceee-eeeee-cc
Q psy4653          78 --------DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD------MLIKLWNWEKAWAC-QQVFE-GH  141 (229)
Q Consensus        78 --------d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d------~~v~lwd~~~~~~~-~~~~~-~~  141 (229)
                              .+.|..+|.++++.....  .....+.++|+|+++.++.+...      +.|.+|++...... ...+. ..
T Consensus       160 ~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~  237 (305)
T 3dr2_A          160 CPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP  237 (305)
T ss_dssp             CCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS
T ss_pred             cccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC
Confidence                    245777777655543322  33456789999999977766554      78999998644210 11111 11


Q ss_pred             eeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653         142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK  212 (229)
Q Consensus       142 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~  212 (229)
                      ......+.+.+ ++.+.++ ..+ .|.+|+. .++.+..+..+. .+.+++|.  ++++.|..++.++..+
T Consensus       238 ~~~pdgi~~d~-~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~--~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          238 DGLPDGFCVDR-GGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFD--QAQQRLFITGGPCLWM  301 (305)
T ss_dssp             SSCCCSEEECT-TSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEEC--TTSCEEEEEETTEEEE
T ss_pred             CCCCCeEEECC-CCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEe--CCCCEEEEEcCCeEEE
Confidence            12233566776 5665554 444 4999998 455566665544 47777875  4555666666654333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=6.2e-07  Score=68.79  Aligned_cols=206  Identities=9%  Similarity=-0.052  Sum_probs=130.0

Q ss_pred             ceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEE
Q psy4653          17 RVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      ....++++|++..|+.+. ..+.|..++..+................+.+.++++.| ++-...+.|.+++.+.......
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            457899999776666554 67899999998765433332222467889999976544 4545567899999865332222


Q ss_pred             eccCCCceeEEEEcCCCCEEE-EEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          95 FEAHSDYVRCVAVHPTQPFLL-TSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~~~-s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      .......-..++++|++..+. +...  .+.|..++++... ..............+++++..+.++++....+.|..+|
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            222224567899999655544 4433  4688888875432 11222122234677888885455667777788999999


Q ss_pred             CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .........+.. ......++.  . ++.++++....+.|..+|..+++.+.++..
T Consensus       196 ~~g~~~~~~~~~-~~~P~gi~~--d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          196 PAQPGRRKVLEG-LQYPFAVTS--Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             TTEEEEEEEEEC-CCSEEEEEE--E-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             cCCCceEEEecC-CCCceEEEE--e-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            875433222332 223345554  2 334555666778999999999998888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.12  E-value=2.4e-08  Score=86.91  Aligned_cols=196  Identities=8%  Similarity=0.035  Sum_probs=130.8

Q ss_pred             CeEEEEEe------cCeEEEEEcCCCCeEEEEEecCcC--------------------------------eEEEEEcCCC
Q psy4653          28 PWMLASLY------NGHVHVWNHETNQNVKSFEVCDLP--------------------------------VRAAKFVPRK   69 (229)
Q Consensus        28 ~~l~~~~~------dg~v~~wd~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~   69 (229)
                      ..+++++.      +|.|..+|..+|+.+..+......                                ...+.++|++
T Consensus       175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~  254 (677)
T 1kb0_A          175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL  254 (677)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT
T ss_pred             CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC
Confidence            34555543      799999999999998887643211                                1357888999


Q ss_pred             CEEEEEeCCC-------------------eEEEEECCCcceEEEecc--CC-------CceeEEEEcCCC---CEEEEEe
Q psy4653          70 NWIVTGSDDM-------------------QVCVFNYNTLERFHSFEA--HS-------DYVRCVAVHPTQ---PFLLTSS  118 (229)
Q Consensus        70 ~~l~sg~~d~-------------------~i~iwd~~~~~~~~~~~~--h~-------~~i~~v~~~~~~---~~~~s~~  118 (229)
                      +.+..++.++                   .|..+|.++++.+..++.  |.       .....+....++   ..++.++
T Consensus       255 ~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~  334 (677)
T 1kb0_A          255 NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP  334 (677)
T ss_dssp             TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC
T ss_pred             CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC
Confidence            9988887664                   599999999998877653  21       111223333466   5788999


Q ss_pred             CCCcEEEEecCCceeeeeeeecc----------eeeE------------------------EEEEEcCCCCCEEEEEEC-
Q psy4653         119 DDMLIKLWNWEKAWACQQVFEGH----------THYV------------------------MQIVINPKDNNTFASASL-  163 (229)
Q Consensus       119 ~d~~v~lwd~~~~~~~~~~~~~~----------~~~v------------------------~~~~~~~~~~~~l~s~~~-  163 (229)
                      .+|.+.++|.++++.+...-...          ..++                        ..++++|. ..+++.... 
T Consensus       335 ~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~-~~~~yv~~~~  413 (677)
T 1kb0_A          335 KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ-TGLVYLPAQN  413 (677)
T ss_dssp             TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT-TTEEEEEEEE
T ss_pred             CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC-CCEEEEeChh
Confidence            99999999988775432221110          0011                        13456664 445554432 


Q ss_pred             ------------------------------------------CCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCE
Q psy4653         164 ------------------------------------------DRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY  201 (229)
Q Consensus       164 ------------------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  201 (229)
                                                                .+.|..||+.+++.++.++... .+....+...  +.+
T Consensus       414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~--g~~  490 (677)
T 1kb0_A          414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTA--GNV  490 (677)
T ss_dssp             CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEET--TTE
T ss_pred             cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcCcceEeC--CCE
Confidence                                                      2789999999999888876432 2322233333  347


Q ss_pred             EEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         202 LISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       202 l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++.++.||.+++||.++++.+.++..
T Consensus       491 v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          491 VFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEECCCCceeeeeeC
Confidence            88889999999999999999988764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.03  E-value=1.9e-07  Score=71.74  Aligned_cols=206  Identities=6%  Similarity=-0.048  Sum_probs=137.0

Q ss_pred             hhhhhcccCCCc--eEEEEEccCCCeEEEEEe--cCeEEEEEcCCCCeEEEEEecCcC-eEEEEEcCCCCEE-EEEeCCC
Q psy4653           6 DIKRKLTARSDR--VKCCDLHPTEPWMLASLY--NGHVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWI-VTGSDDM   79 (229)
Q Consensus         6 ~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~--dg~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l-~sg~~d~   79 (229)
                      ++.+++. |...  ...+.|+|++...++++.  ++.|.+.|+.+++.+..+.....+ ...+.+.  ++.| ++...++
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            4555564 5433  579999998644444332  589999999999998887643322 2344444  4444 4445578


Q ss_pred             eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-ee---eEEEEEEcCCCC
Q psy4653          80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-TH---YVMQIVINPKDN  155 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~  155 (229)
                      .+.++|.++.+.+..+.....  ....+++++..++++..+++|.+.|.........+..+. ..   ....+.+.  ++
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg  162 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NG  162 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TT
T ss_pred             EEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CC
Confidence            999999999988887753311  134466677777766678899999987764444433221 11   24566665  45


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceEEEecC-------------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         156 NTFASASLDRTVKVWQLGSASPNFTLEGH-------------EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .+++....++.|.+-|..+++.+..+.-.             ....+.++|.+. ...+++|+....+|..-++...
T Consensus       163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~-~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE-NKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT-TTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC-CCEEEEECCCCCeEEEEEEecc
Confidence            56666556889999999999887777531             124578998643 3357888888899988887543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.01  E-value=1.1e-07  Score=78.04  Aligned_cols=186  Identities=13%  Similarity=0.031  Sum_probs=124.7

Q ss_pred             cCCCeEEEEEe-c----CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCc
Q psy4653          25 PTEPWMLASLY-N----GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQVCVFNYNTL   89 (229)
Q Consensus        25 p~~~~l~~~~~-d----g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~i~iwd~~~~   89 (229)
                      |+++.+++... +    +.|.+.|..+.+.+..+.....+  .+.++|+++.|.++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46666666654 3    79999999999999999877777  899999999887776          3668999999999


Q ss_pred             ceEEEeccC-------CCceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          90 ERFHSFEAH-------SDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        90 ~~~~~~~~h-------~~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      +.+..+.-.       ...-..+.|+|++++++++..  +++|.+.|+........+-.+..     ....|.....+++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~v~  234 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVFYM  234 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEEEE
Confidence            888776432       122357899999999888764  57899999988754433322211     2223333467777


Q ss_pred             EECCCcEEEEeCCCCCceEEE----ecCCCce-EEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         161 ASLDRTVKVWQLGSASPNFTL----EGHEKGV-NCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~----~~h~~~v-~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .+.|+++.+.+...++.....    .-...++ ..+.|.  .++..++..+..+.|.+.|...+
T Consensus       235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~--~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS--LRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC--TTTCEEEEEBTTSEEEEEEECSS
T ss_pred             EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec--CCCCEEEEEeCCCcEEEEeccCC
Confidence            888999888888555443221    1111111 123342  23334444456789999998654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.97  E-value=6.2e-11  Score=95.91  Aligned_cols=147  Identities=12%  Similarity=0.047  Sum_probs=82.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeeccee-eEE
Q psy4653          68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH-YVM  146 (229)
Q Consensus        68 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~-~v~  146 (229)
                      ++..+++++.|+.|..||.++++.+..++.  +.+.+..+.+++..+++++.|+.|+.||.+++..... +..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK-LPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE-CSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee-eeccCccccc
Confidence            577899999999999999999999888776  4555555667777888888999999999866533211 211111 010


Q ss_pred             -EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         147 -QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       147 -~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                       ...+.  .+..+++++.|+.++.||..+++.++.+..+..    ..+.+  .+..+++++.|+.|+.||.++++.+-.+
T Consensus        85 ~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           85 ASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             cCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence             00111  245677788899999999999998887765431    22222  3457888999999999999998765443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.97  E-value=1.9e-07  Score=75.16  Aligned_cols=189  Identities=10%  Similarity=0.018  Sum_probs=118.7

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecC---------cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCD---------LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      +..+++++.++.|..+|..+++.+..+....         ..+.+. ....+..+..++.++.|..+|.++++.+..+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            5568888889999999999999988776532         122222 222456788888999999999999998877654


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeE-----EEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----MQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      ...........  +..++.++.++.|..+|.+++...-.. .......     ......   +..++.+..++.+..+|.
T Consensus       132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEET
T ss_pred             CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEEC
Confidence            43322222222  347778888999999998776433222 1111100     111221   346777888999999999


Q ss_pred             CCCCceEEEecCCCc----------eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         173 GSASPNFTLEGHEKG----------VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       173 ~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      .+++.++........          +...-..   ....+..++.++.+..+|.++++.+-..
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEeec
Confidence            998887766532110          1000000   1124666777788888888887765443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.96  E-value=7e-07  Score=71.83  Aligned_cols=187  Identities=11%  Similarity=0.079  Sum_probs=117.1

Q ss_pred             eEEEEEecCeEEEEEcCCCCeEEEEEecCcCe-----EEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCc--
Q psy4653          29 WMLASLYNGHVHVWNHETNQNVKSFEVCDLPV-----RAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDY--  101 (229)
Q Consensus        29 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~--  101 (229)
                      .+++++.++.|..+|..+++.+..+.......     .....  .+..++.++.++.+..+|.++++.+.........  
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            56667777788888888887776665432110     11111  1456778888999999999999887665432110  


Q ss_pred             --eeE---EEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         102 --VRC---VAVHP--TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       102 --i~~---v~~~~--~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                        +..   +.-.|  .+..++.++.++.+..+|.+++...-...   ......+..   ++..+..++.++.+..+|..+
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---CCCEEEEEE---ETTEEEEEETTCCEEEEETTT
T ss_pred             cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---CCCCCCceE---ECCEEEEEcCCCeEEEEECCC
Confidence              000   11111  24567777889999999987764332221   112233333   245677778899999999999


Q ss_pred             CCceEEEecC-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         175 ASPNFTLEGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       175 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++.++..... ..........    +..|..++.+|.+..+|.++++.+...+.
T Consensus       297 G~~~w~~~~~~~~~~~~~~~~----~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          297 GVTLWTQSDLLHRLLTSPVLY----NGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             CCEEEEECTTTTSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcEEEeecccCCCcccCCEEE----CCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            9888776522 2222222221    23688889999999999999998766543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.96  E-value=1e-07  Score=83.18  Aligned_cols=196  Identities=9%  Similarity=0.033  Sum_probs=118.8

Q ss_pred             EEEEEccCCCeEEEEEecC-------------eEEEEEcCCCCe--EEEEEec---CcCeEEEEEcCCCCEEEEEeC---
Q psy4653          19 KCCDLHPTEPWMLASLYNG-------------HVHVWNHETNQN--VKSFEVC---DLPVRAAKFVPRKNWIVTGSD---   77 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg-------------~v~~wd~~~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~sg~~---   77 (229)
                      ..++|+ |++.|+.+..++             .|.+|++.++..  ...+...   ......+.|+|+|++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            577899 999999998774             399999988653  3333332   224678999999998754432   


Q ss_pred             -CCeEEEEECCCcc-eEEEeccCCCceeEEEEcCCCCE-EEEEeCC---CcEEEEecCCcee-eeeeeecceeeEEEEEE
Q psy4653          78 -DMQVCVFNYNTLE-RFHSFEAHSDYVRCVAVHPTQPF-LLTSSDD---MLIKLWNWEKAWA-CQQVFEGHTHYVMQIVI  150 (229)
Q Consensus        78 -d~~i~iwd~~~~~-~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d---~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~  150 (229)
                       +..|.++|+++++ ....+..+.+..... +++++.. ++.+..+   +.|..+|+..... ..+.+..|...+.  .+
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence             2489999987653 345555565555555 5565554 4455443   6799999876422 0123344444444  66


Q ss_pred             cCCCCCEEEEEE-CCC--cEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeC---CCeEEEEECCCCeE
Q psy4653         151 NPKDNNTFASAS-LDR--TVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGAD---DRLVKIWDYQNKTC  221 (229)
Q Consensus       151 ~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~  221 (229)
                      ++. +..|+... .++  .|++||+..+ ....+.. ....+..+.+.+. ...++++.+.   -++|..||+.+++.
T Consensus       334 s~~-g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d-~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          334 HSG-SGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHD-DPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTT-CSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEE-CCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCC-CCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            663 55555544 454  6888888743 3344432 2334444444322 2234444332   27899999987753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.94  E-value=5.8e-07  Score=68.51  Aligned_cols=191  Identities=11%  Similarity=0.108  Sum_probs=123.6

Q ss_pred             hhhhhcccCCCce--EEEEEccCCCeEEEEEecC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEE-eCCCe
Q psy4653           6 DIKRKLTARSDRV--KCCDLHPTEPWMLASLYNG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG-SDDMQ   80 (229)
Q Consensus         6 ~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~~   80 (229)
                      ++.+.|. |..+-  ..+.|+ ++....+++.+|  .|+..|+.+++.+........ .......+.++.|... ..++.
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCE
Confidence            5556664 55444  889998 666666666666  999999999999888765443 3332233334544444 45788


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ce-eeEEEEEEcCCCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HT-HYVMQIVINPKDNN  156 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~  156 (229)
                      +.++|.++.+.+.++....   ....+.+++..++.+..+.+|.++|..+......+..+   .. ..+..+.+.  ++.
T Consensus       109 v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~  183 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGE  183 (262)
T ss_dssp             EEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTE
T ss_pred             EEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCE
Confidence            9999999999988876432   23344466777766666788999998766443333221   11 223445554  566


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecC------------CCceEEEEEEeCCCcCEEEEe
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGH------------EKGVNCVDYYHGGDKPYLISG  205 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~~~l~s~  205 (229)
                      +++....+..|.+.|.++++.+..+.-.            ....+.|+|.+.. ..+++||
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~-~~lfVTG  243 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH-HRLFVTG  243 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT-TEEEEEE
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC-CEEEEEC
Confidence            6666557889999999999877766531            1245889996533 3355554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.92  E-value=1.6e-07  Score=81.91  Aligned_cols=185  Identities=14%  Similarity=0.097  Sum_probs=120.6

Q ss_pred             EEEEEccCCCeEEEEEecC-------------------eEEEEEcCCCCeEEEEEecC---------cCeEEEEEcCCCC
Q psy4653          19 KCCDLHPTEPWMLASLYNG-------------------HVHVWNHETNQNVKSFEVCD---------LPVRAAKFVPRKN   70 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg-------------------~v~~wd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~   70 (229)
                      ..++++|+...++.+..++                   .|..||..||+.+..++...         .+........+|+
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            4678999999999988776                   49999999999998886521         1222223333554


Q ss_pred             ---EEEEEeCCCeEEEEECCCcceEEEeccCC----------------------------Cc-----------eeEEEEc
Q psy4653          71 ---WIVTGSDDMQVCVFNYNTLERFHSFEAHS----------------------------DY-----------VRCVAVH  108 (229)
Q Consensus        71 ---~l~sg~~d~~i~iwd~~~~~~~~~~~~h~----------------------------~~-----------i~~v~~~  108 (229)
                         .++.++.+|.+.++|.++++.+...+...                            ..           -..++|+
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999998764321100                            00           1137888


Q ss_pred             CCCCEEEEEeC---------------------------------------------CCcEEEEecCCceeeeeeeeccee
Q psy4653         109 PTQPFLLTSSD---------------------------------------------DMLIKLWNWEKAWACQQVFEGHTH  143 (229)
Q Consensus       109 ~~~~~~~s~~~---------------------------------------------d~~v~lwd~~~~~~~~~~~~~~~~  143 (229)
                      |+..++++...                                             ++.|..||+.+++..-+. ..+. 
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~-~~~~-  475 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEV-PYVT-  475 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEE-EESS-
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEc-cCCC-
Confidence            88877776532                                             367889998877443332 2221 


Q ss_pred             eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCc-eEEEEEEeCCCcCEEEEeeC
Q psy4653         144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG-VNCVDYYHGGDKPYLISGAD  207 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~  207 (229)
                      +.....+.. .+.+++.|+.|+.++.||.++++.+++++..... ..-+.|...+ .+|++..+.
T Consensus       476 ~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G-~qyv~~~~G  538 (689)
T 1yiq_A          476 IFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG-EQYVTFMAG  538 (689)
T ss_dssp             SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT-EEEEEEEEC
T ss_pred             CccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC-EEEEEEEec
Confidence            111112233 4568888999999999999999999988754332 2335554333 346665443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.88  E-value=4.7e-07  Score=71.17  Aligned_cols=184  Identities=14%  Similarity=0.095  Sum_probs=120.9

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEE
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVA  106 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~  106 (229)
                      +..+.+++.++.|..+|.. ++....+......+.++...++++ |..|+.++.|..+|.+ ++....+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            5567888889999999999 777776665554556666666666 5567788999999998 777666665566677888


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCC
Q psy4653         107 VHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK  186 (229)
Q Consensus       107 ~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~  186 (229)
                      +.+++.+.++.   +.|..+| .++.... ........+..+...+ ++ .+..++.++.+..+|. ++..+........
T Consensus       184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~-~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~  255 (330)
T 3hxj_A          184 IGKDGTIYFGS---DKVYAIN-PDGTEKW-NFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR  255 (330)
T ss_dssp             ECTTCCEEEES---SSEEEEC-TTSCEEE-EECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred             EcCCCEEEEEe---CEEEEEC-CCCcEEE-EEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence            87777755544   7899999 4443322 2222233455566654 34 4555777888888874 4555555554333


Q ss_pred             ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       187 ~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      .+..+.+  ..++ .|..++.+|.|..+|. +++.+..+
T Consensus       256 ~~~~~~~--~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~  290 (330)
T 3hxj_A          256 IESSPVI--GNTD-TIYFGSYDGHLYAINP-DGTEKWNF  290 (330)
T ss_dssp             CCSCCEE--CTTS-CEEEECTTCEEEEECT-TSCEEEEE
T ss_pred             ccccceE--cCCC-eEEEecCCCCEEEECC-CCcEEEEE
Confidence            3333333  2233 4777888889999996 56655444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=2.5e-06  Score=64.38  Aligned_cols=192  Identities=10%  Similarity=0.038  Sum_probs=122.9

Q ss_pred             hhhhhcccCCCc--eEEEEEccCCCeEEEEEec--CeEEEEEcCCCCeEEEEEecCcCe-EEEEEcCCCCEEEEEeCCCe
Q psy4653           6 DIKRKLTARSDR--VKCCDLHPTEPWMLASLYN--GHVHVWNHETNQNVKSFEVCDLPV-RAAKFVPRKNWIVTGSDDMQ   80 (229)
Q Consensus         6 ~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~d--g~v~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~sg~~d~~   80 (229)
                      ++.+.| .|...  ...+.|++ +....+++.+  +.|+..|+.+++.+.......... -.+.+. .+++.+....++.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence            455666 36543  57999997 5555555654  499999999999988876544321 233343 2334444456789


Q ss_pred             EEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ce---eeEEEEEEcCCCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HT---HYVMQIVINPKDNN  156 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~  156 (229)
                      +.++|.++.+.+..+.....   ...+.+++..++.+..+++|.++|.++......+-.+ +.   ..++.+.+.  ++.
T Consensus        87 v~v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~  161 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGE  161 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTE
T ss_pred             EEEEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCE
Confidence            99999999999888764332   2344456676766666889999998776443333221 11   223455553  566


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEecC------------C-CceEEEEEEeCCCcCEEEEee
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLEGH------------E-KGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h------------~-~~v~~~~~~~~~~~~~l~s~s  206 (229)
                      +++....+..|.+-|.++++.+..+.-.            . ...+.|++.+. ...+++||-
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~-~~~lfVTGK  223 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE-HDRLFVTGK  223 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT-TTEEEEEET
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC-CCEEEEECC
Confidence            6665556889999999999877766421            1 23588998653 334566553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=3.7e-07  Score=79.48  Aligned_cols=197  Identities=9%  Similarity=0.039  Sum_probs=129.0

Q ss_pred             ceEEEEEccCCCeEEEEEecC-------------------eEEEEEcCCCCeEEEEEecCc---------CeEEEEEcCC
Q psy4653          17 RVKCCDLHPTEPWMLASLYNG-------------------HVHVWNHETNQNVKSFEVCDL---------PVRAAKFVPR   68 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg-------------------~v~~wd~~~~~~~~~~~~~~~---------~v~~~~~~~~   68 (229)
                      ....+.++|++..++.+..++                   +|..+|..+|+.+..++....         ....+....+
T Consensus       244 ~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d  323 (677)
T 1kb0_A          244 MWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA  323 (677)
T ss_dssp             CCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred             cccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC
Confidence            335678999999888887654                   599999999999988874211         1222333346


Q ss_pred             C---CEEEEEeCCCeEEEEECCCcceEEEeccCC-----------Cce------------------------eEEEEcCC
Q psy4653          69 K---NWIVTGSDDMQVCVFNYNTLERFHSFEAHS-----------DYV------------------------RCVAVHPT  110 (229)
Q Consensus        69 ~---~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-----------~~i------------------------~~v~~~~~  110 (229)
                      |   +.++.++.+|.+.++|.++++.+..++...           ..+                        ..++|+|+
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~  403 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ  403 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence            6   689999999999999999999876553211           001                        15788998


Q ss_pred             CCEEEEEeCC-------------------------------------------CcEEEEecCCceeeeeeeecceeeEEE
Q psy4653         111 QPFLLTSSDD-------------------------------------------MLIKLWNWEKAWACQQVFEGHTHYVMQ  147 (229)
Q Consensus       111 ~~~~~s~~~d-------------------------------------------~~v~lwd~~~~~~~~~~~~~~~~~v~~  147 (229)
                      ..++++...+                                           +.|..||+.+++..-+...+  .++..
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~  481 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNG  481 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCC
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--CCCcC
Confidence            8877765432                                           67999998877443332211  12222


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCC-ceEEEEEEeCCCcCEEEEeeC----------------CCe
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK-GVNCVDYYHGGDKPYLISGAD----------------DRL  210 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~----------------d~~  210 (229)
                      ..+.. .+.+++.++.|+.+++||.++++.++.+..... ...-+.|...+ ..+++..+.                .+.
T Consensus       482 g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G-~~~v~~~~G~~~~~~~~~~~~~~~~~~~  559 (677)
T 1kb0_A          482 GTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG-RQYVSVAVGWGGVYGLAARATERQGPGT  559 (677)
T ss_dssp             CEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT-EEEEEEEECCCHHHHHHCCSCSCCCCCE
T ss_pred             cceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC-EEEEEEeccCCccccccccccccCCCCe
Confidence            22333 456778889999999999999999998874432 22334443332 345555333                366


Q ss_pred             EEEEECC
Q psy4653         211 VKIWDYQ  217 (229)
Q Consensus       211 i~iwd~~  217 (229)
                      +..|.+.
T Consensus       560 l~~f~l~  566 (677)
T 1kb0_A          560 VYTFVVG  566 (677)
T ss_dssp             EEEEEET
T ss_pred             EEEEecc
Confidence            7777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.85  E-value=2.9e-06  Score=69.53  Aligned_cols=199  Identities=11%  Similarity=0.125  Sum_probs=124.4

Q ss_pred             cCCCeEEEEE-ecCeEEEEEcCCC----CeEEEEEe-------cCcCeEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q psy4653          25 PTEPWMLASL-YNGHVHVWNHETN----QNVKSFEV-------CDLPVRAAKFVPRKNWIVTGSDD------MQVCVFNY   86 (229)
Q Consensus        25 p~~~~l~~~~-~dg~v~~wd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~sg~~d------~~i~iwd~   86 (229)
                      ++++.|++.+ .++.|.+.|+.+.    +..+..+.       ....-..+...|+| ++++...+      +.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            8888888865 6889999999754    44454420       11124566788999 76666655      78999999


Q ss_pred             CCcceEEEeccCC---CceeEEEEcCCCCEEEEEe-------------------CCCcEEEEecCCceeeeeeeec-cee
Q psy4653          87 NTLERFHSFEAHS---DYVRCVAVHPTQPFLLTSS-------------------DDMLIKLWNWEKAWACQQVFEG-HTH  143 (229)
Q Consensus        87 ~~~~~~~~~~~h~---~~i~~v~~~~~~~~~~s~~-------------------~d~~v~lwd~~~~~~~~~~~~~-~~~  143 (229)
                      ++.+.+..+....   ..-..+.|+|+++.++++.                   ...+|.+||+........+-.+ ...
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999888876322   2223588899999888885                   4689999999876433333222 112


Q ss_pred             eEEEEEE--cCCCCCEEE-EEE-----CCCcEEEEeCCCCC--ceEEE--ecC----------------CCceEEEEEEe
Q psy4653         144 YVMQIVI--NPKDNNTFA-SAS-----LDRTVKVWQLGSAS--PNFTL--EGH----------------EKGVNCVDYYH  195 (229)
Q Consensus       144 ~v~~~~~--~~~~~~~l~-s~~-----~d~~i~~wd~~~~~--~~~~~--~~h----------------~~~v~~~~~~~  195 (229)
                      ....+.+  +| ++.++. ++-     .+++|.+|....+.  ....+  ...                ......+.+  
T Consensus       252 ~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l--  328 (462)
T 2ece_A          252 MALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI--  328 (462)
T ss_dssp             EEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE--
T ss_pred             ccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE--
Confidence            3344545  87 455544 444     67788877654321  11111  110                122455666  


Q ss_pred             CCCcCEEEE-eeCCCeEEEEECC---CCeEEEeecc
Q psy4653         196 GGDKPYLIS-GADDRLVKIWDYQ---NKTCVQTLES  227 (229)
Q Consensus       196 ~~~~~~l~s-~s~d~~i~iwd~~---~~~~~~~~~~  227 (229)
                      ++++++|.. .-..+.|.+||+.   +.+.+..+..
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t  364 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL  364 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence            445555554 4457899999985   3456666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.81  E-value=1.4e-05  Score=63.93  Aligned_cols=205  Identities=9%  Similarity=0.015  Sum_probs=129.2

Q ss_pred             ceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEEE
Q psy4653          17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      ....++|+|....|+.+ ...+.|..++..++...............+++.+.+. +.++-...+.|.+.+.+.......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            46789999876666554 4678999999987664443332223456788887544 455556677899999875433222


Q ss_pred             eccCCCceeEEEEcCCCCE-EEEEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          95 FEAHSDYVRCVAVHPTQPF-LLTSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~-~~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      +......-..++++|.+.. +++-... +.|...+++... ...+....-.....++++|.++.++++-...+.|..+|+
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            3233345689999986554 4555455 788888876432 122222223345788998866777777777889999998


Q ss_pred             CCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         173 GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       173 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ........+.........+++.   ++.+..+-...+.|...|..+++.+.++
T Consensus       233 dG~~~~~~~~~~~~~P~giav~---~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          233 DGSHRKAVISQGLPHPFAITVF---EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCceEEEEeCCCCCceEEEEE---CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            7544333333333345666762   2346667777888888886666544444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.79  E-value=1.9e-06  Score=74.96  Aligned_cols=189  Identities=9%  Similarity=0.127  Sum_probs=122.1

Q ss_pred             cCeEEEEEcCCCCeEEEEEecC-c------------------------------CeEEEEEcCCCCEEEEEeCCC-----
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCD-L------------------------------PVRAAKFVPRKNWIVTGSDDM-----   79 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~-~------------------------------~v~~~~~~~~~~~l~sg~~d~-----   79 (229)
                      +|.|..+|.++|+.+..+.... .                              ....+.+.|+.+.+..++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999998875321 0                              112468888888888888776     


Q ss_pred             --------------eEEEEECCCcceEEEecc--CC-------CceeEEEEcCCCC---EEEEEeCCCcEEEEecCCcee
Q psy4653          80 --------------QVCVFNYNTLERFHSFEA--HS-------DYVRCVAVHPTQP---FLLTSSDDMLIKLWNWEKAWA  133 (229)
Q Consensus        80 --------------~i~iwd~~~~~~~~~~~~--h~-------~~i~~v~~~~~~~---~~~s~~~d~~v~lwd~~~~~~  133 (229)
                                    .|..+|.++++.+..++.  |.       .......+..+++   .++.++.+|.+.++|..+++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          399999999998877654  22       1222223333554   688889999999999877654


Q ss_pred             eeeeeecc-----------eeeE------------------------EEEEEcCCCCCEEEE------------------
Q psy4653         134 CQQVFEGH-----------THYV------------------------MQIVINPKDNNTFAS------------------  160 (229)
Q Consensus       134 ~~~~~~~~-----------~~~v------------------------~~~~~~~~~~~~l~s------------------  160 (229)
                      +...-...           ..++                        ..++++|..+..++.                  
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            31110000           0000                        013455533322221                  


Q ss_pred             -----------------EECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         161 -----------------ASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       161 -----------------~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                                       ...++.|..||+.+++.++..+.+.. .........  +.+++.++.|+.++.||.++++.+.
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~--gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTA--GNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEET--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEeC--CCEEEEECCcccchhhhhhcChhhe
Confidence                             11347899999999998888765432 221122222  3478889999999999999999987


Q ss_pred             eecc
Q psy4653         224 TLES  227 (229)
Q Consensus       224 ~~~~  227 (229)
                      .++.
T Consensus       494 ~~~~  497 (668)
T 1kv9_A          494 QFEA  497 (668)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            7654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.79  E-value=8.6e-06  Score=66.09  Aligned_cols=207  Identities=9%  Similarity=0.025  Sum_probs=129.8

Q ss_pred             CceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEE
Q psy4653          16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      .....++|++.+..|+.+ ...+.|..++...+.....+.........+++.+.+. +.++-...+.|.+.+++......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            356789999876655554 4678999999987664443332223456678887554 44555566788888876543322


Q ss_pred             EeccCCCceeEEEEcCCCCEE-EEEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          94 SFEAHSDYVRCVAVHPTQPFL-LTSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~~~-~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      .+......-..++++|.+..+ ++-... +.|...+++... ...+....-.....++++|.++.++++-+..+.|..+|
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            233333456899999876655 444444 688888876432 22222222334678899876667777777888999999


Q ss_pred             CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +........+.........+++.   .+.++.+....+.|..+|..+++.+.++.
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav~---~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITVF---EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCeeEEEEECCCCCceEEEEE---CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            87544333333333345666762   23466777788899999866665555443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.79  E-value=2.4e-06  Score=65.21  Aligned_cols=191  Identities=9%  Similarity=0.001  Sum_probs=123.6

Q ss_pred             hhhhhcccCCCce--EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC-eEEEEEcCCCCEEEEEeCCCeEE
Q psy4653           6 DIKRKLTARSDRV--KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDMQVC   82 (229)
Q Consensus         6 ~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~~i~   82 (229)
                      ++.+.|. |..+-  ..+.|+ ++....+++.+|.|+.+|+.+++.+... ..... .-.+.+.. +++.+....++.+.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence            4555563 54433  788888 3555666678899999999999998887 43322 12344442 33444445678999


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-cee---eEEEEEEcCCCCCEE
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTH---YVMQIVINPKDNNTF  158 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~~~l  158 (229)
                      ++|.++.+.+.++.....   ...+.+++..|+.+..+++|.++|.++......+..+ +..   .+..+.+.  ++.++
T Consensus       120 V~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~ly  194 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIY  194 (268)
T ss_dssp             EEETTTTEEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEE
T ss_pred             EEECCcCcEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEE
Confidence            999999999888764322   2333466777777777889999998776443333221 111   23455654  56666


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecC-------------CCceEEEEEEeCCCcCEEEEee
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGH-------------EKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                      +....+..|.+-|.++++.+..+.-.             ....+.|+|.+. ...+++||-
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~-~~rlfVTGK  254 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG-SGRIFMTGK  254 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT-TCCEEEEET
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC-CCEEEEeCC
Confidence            65557889999999999877666421             124588998643 345666653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=2.2e-05  Score=59.99  Aligned_cols=190  Identities=10%  Similarity=0.005  Sum_probs=114.3

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeE-----EEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCcceEEEeccCCCc
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNV-----KSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFNYNTLERFHSFEAHSDY  101 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~~~~~~~h~~~  101 (229)
                      ++|+.+.. +.|+.+++......     ..+.........+.++++++.|. +-..++.|..++.+.......+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            45555543 58999998765431     12222223568899999766554 4455678999998765433333222346


Q ss_pred             eeEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC--CCcEEEEeCCCCCce
Q psy4653         102 VRCVAVHPTQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL--DRTVKVWQLGSASPN  178 (229)
Q Consensus       102 i~~v~~~~~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~  178 (229)
                      ...+++++++. ++++-...+.|.+++++... ..............++++|..+.++++...  .+.|..+++.... .
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~  158 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R  158 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence            78999999755 45565667899999986432 122222112345778888855555555543  4688888876433 2


Q ss_pred             EEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         179 FTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       179 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      ..+. ........+++.+. .+.+.++-...+.|..+|......
T Consensus       159 ~~~~~~~~~~P~gia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAF-SSQLCWVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             EEEECTTCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTEEEE
T ss_pred             EEEEECCCCCCcEEEEcCC-CCEEEEEECCCCEEEEEecCCCce
Confidence            2232 22234667787532 233556666778999999975443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=5.3e-07  Score=70.82  Aligned_cols=191  Identities=13%  Similarity=-0.009  Sum_probs=121.7

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ..+.++...+++. ++.++.++.|..+|.. ++....+......+.++...+++++.+ ++  +.+..+| .+++....+
T Consensus       137 ~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~  210 (330)
T 3hxj_A          137 AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF  210 (330)
T ss_dssp             CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred             ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence            3455566666665 6677788999999999 888777765555677777777777554 44  7789999 677776666


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCC
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA  175 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  175 (229)
                      ......+.++...+++.+ ..++.++.+..+|.... .. ..+......+..+.+.+ + ..+..++.++.+..+|. ++
T Consensus       211 ~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g~-~~-~~~~~~~~~~~~~~~~~-~-g~l~v~t~~ggl~~~d~-~g  284 (330)
T 3hxj_A          211 YAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDGT-EK-WRFKTGKRIESSPVIGN-T-DTIYFGSYDGHLYAINP-DG  284 (330)
T ss_dssp             CCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTSC-EE-EEEECSSCCCSCCEECT-T-SCEEEECTTCEEEEECT-TS
T ss_pred             ccCCcceeceEECCCCeE-EEEcCCCeEEEECCCCC-Ee-EEeeCCCCccccceEcC-C-CeEEEecCCCCEEEECC-CC
Confidence            655667888888888754 45566788888875322 22 22222222222334432 3 45666788888999996 56


Q ss_pred             CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         176 SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       176 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      +.+.........+.++..  ..++ .|..|+.+|.+++...+..+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~--d~~g-~l~~gt~~G~~~~~~~~~~~~  327 (330)
T 3hxj_A          285 TEKWNFETGSWIIATPVI--DENG-TIYFGTRNGKFYALFNLEHHH  327 (330)
T ss_dssp             CEEEEEECSSCCCSCCEE--CTTC-CEEEECTTSCEEEEEC-----
T ss_pred             cEEEEEEcCCccccceEE--cCCC-EEEEEcCCCeEEEEecccccc
Confidence            666655544344454444  2233 467799999999988765543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.75  E-value=7e-07  Score=72.00  Aligned_cols=112  Identities=13%  Similarity=-0.108  Sum_probs=84.0

Q ss_pred             ceEEEEEcc-CCCeEEEEE-ecC----eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------CCCe
Q psy4653          17 RVKCCDLHP-TEPWMLASL-YNG----HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------DDMQ   80 (229)
Q Consensus        17 ~v~~~~~~p-~~~~l~~~~-~dg----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~d~~   80 (229)
                      ++.|..+.| ....+++.. .++    +|.+.|..+++.+..+.....+  .+.++|+++.+.++.          .++.
T Consensus        20 ~~~~~~~~~~~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             ccccccCCCCCCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCE
Confidence            344444444 334454443 344    8899999999999999887777  799999999888876          3678


Q ss_pred             EEEEECCCcceEEEeccCC-------CceeEEEEcCCCCEEEEEeC--CCcEEE--EecCC
Q psy4653          81 VCVFNYNTLERFHSFEAHS-------DYVRCVAVHPTQPFLLTSSD--DMLIKL--WNWEK  130 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~-------~~i~~v~~~~~~~~~~s~~~--d~~v~l--wd~~~  130 (229)
                      |.+||..+++.+..+..+.       ..-..+.++|++++++++..  +..|.+  +|+..
T Consensus        98 VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            9999999999988875431       23458999999998887764  467888  99855

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.72  E-value=3.5e-06  Score=74.24  Aligned_cols=195  Identities=12%  Similarity=0.117  Sum_probs=114.0

Q ss_pred             cCCC-ceEEEEEc-cCCCeEEEEEe-cC----eEEEEEcCCC-CeEE-EEEecCcCeEEEEEcCCCCEEEEEeCC-----
Q psy4653          13 ARSD-RVKCCDLH-PTEPWMLASLY-NG----HVHVWNHETN-QNVK-SFEVCDLPVRAAKFVPRKNWIVTGSDD-----   78 (229)
Q Consensus        13 ~~~~-~v~~~~~~-p~~~~l~~~~~-dg----~v~~wd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~d-----   78 (229)
                      +|.- .+...+|| |||+.++.+.. +|    .|+++|+.++ +.+. .+..   ....+.|+|+++.|+....|     
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence            4443 68889999 99998887653 33    4999999998 6321 1211   13567899999877776654     


Q ss_pred             CeEEEEECCCcc--eEEEec-cCCCceeEEEEcCCCCEEEEEe---CCCcEEEEecCCce-ee--eeeeecceeeEEEEE
Q psy4653          79 MQVCVFNYNTLE--RFHSFE-AHSDYVRCVAVHPTQPFLLTSS---DDMLIKLWNWEKAW-AC--QQVFEGHTHYVMQIV  149 (229)
Q Consensus        79 ~~i~iwd~~~~~--~~~~~~-~h~~~i~~v~~~~~~~~~~s~~---~d~~v~lwd~~~~~-~~--~~~~~~~~~~v~~~~  149 (229)
                      .+|..+++.++.  ....+. ........+.|+|++++|+..+   ....|.++|+.... ..  ..+..........+.
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            257778887653  222332 2334567889999999876444   23468888887542 22  223333334445555


Q ss_pred             EcCCCCCEEEEEECC----CcEEEEeCCCCCceEE-EecCCCc--eEEEEEEeCCCcCEEEEeeCCCeEEEE
Q psy4653         150 INPKDNNTFASASLD----RTVKVWQLGSASPNFT-LEGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIW  214 (229)
Q Consensus       150 ~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~~i~iw  214 (229)
                      |+. ++.+++....+    ..|..+|+.+...... +..+...  +..+++  .+ ..++++...|+..+||
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~-~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RS-NYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CS-SEEEEEEEETTEEEEE
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--EC-CEEEEEEEeCCEEEEE
Confidence            443 33344444343    3566666654222223 3334333  344444  33 3467778888875554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.70  E-value=4.1e-05  Score=58.36  Aligned_cols=202  Identities=6%  Similarity=0.028  Sum_probs=130.5

Q ss_pred             hhcccCCCceEEEEEccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      +.+.|-...+..++++|++..|++ ...++.|...|.. ++.++.+.... ...-.+.+.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            456677778999999998877776 5578899999998 88888775432 35677888888877677666778888887


Q ss_pred             CCcce---EEEec------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc--eeeeeeee-------cceeeEEEE
Q psy4653          87 NTLER---FHSFE------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA--WACQQVFE-------GHTHYVMQI  148 (229)
Q Consensus        87 ~~~~~---~~~~~------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~--~~~~~~~~-------~~~~~v~~~  148 (229)
                      .....   +....      ........++|+|.+..|+++.......+|.+...  .....+..       .+......+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            54332   22221      12445789999999987776665555555555311  00111111       012235688


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC---------CCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH---------EKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      .++|.++.+++.....+.+..+|.... .+..+.-.         ......++|.+  ++++.+ .++-+-+..|.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~--~G~lyI-vsE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDA--SGNIYI-VSEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECT--TCCEEE-EETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECC--CCCEEE-EcCCceEEEEE
Confidence            899988888888788889999997643 44333211         12456788854  455444 46666555554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.68  E-value=8e-05  Score=60.69  Aligned_cols=208  Identities=11%  Similarity=0.009  Sum_probs=129.1

Q ss_pred             CCceEEEEEccCCCeEEEE-EecCeEEEEEcCCCC----eEEEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q psy4653          15 SDRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQ----NVKSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~   88 (229)
                      -..+.+++|++.+..|+-+ ...+.|+.+++....    ..............+++.+. +++.++-...+.|.+.+++.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            3467899999876655555 467899999987632    22222222345678888874 45555556677899988876


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEe-C-CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSS-D-DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~-d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ......+......-..|+++|.+..|+.+. . .+.|...+++... ...+....-.....+++++.++.++++-...++
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            544333333334568999999666554443 3 4788888886432 222222222456788998866667777777889


Q ss_pred             EEEEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         167 VKVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |...|+........+..  .-.....+++.   ...++.+....+.|..+|..+++.+.++.
T Consensus       270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~---~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEETTSCCCEEEEECSSTTSSEEEEEEE---TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEeCCCCccEEEEeCCCCCCCCEEEEEe---CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            99999875544333332  12334566652   23467777788889999977776555543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.68  E-value=8.5e-06  Score=66.81  Aligned_cols=152  Identities=15%  Similarity=0.172  Sum_probs=102.1

Q ss_pred             EEEEccCCCeEEEEEec------CeEEEEEcCCCCeEEEEEecCcC---eEEEEEcCCCCEEEEEe--------------
Q psy4653          20 CCDLHPTEPWMLASLYN------GHVHVWNHETNQNVKSFEVCDLP---VRAAKFVPRKNWIVTGS--------------   76 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~sg~--------------   76 (229)
                      .+...|++ .+++...+      |.|.+.|..+.+.+..+.....+   -..+.|+|+++.+++..              
T Consensus       142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~  220 (462)
T 2ece_A          142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE  220 (462)
T ss_dssp             EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred             ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence            35667999 77766666      79999999999999888643222   34578899999988885              


Q ss_pred             -----CCCeEEEEECCCcceEEEeccCC--CceeEEEE--cCCCCEEEEEe------CCCcEEEEecCCce-eeeeee--
Q psy4653          77 -----DDMQVCVFNYNTLERFHSFEAHS--DYVRCVAV--HPTQPFLLTSS------DDMLIKLWNWEKAW-ACQQVF--  138 (229)
Q Consensus        77 -----~d~~i~iwd~~~~~~~~~~~~h~--~~i~~v~~--~~~~~~~~s~~------~d~~v~lwd~~~~~-~~~~~~--  138 (229)
                           .+.+|.+||+.+++.+..+....  ..-..+.|  +|+++++..++      .+++|.+|..+.+. ...+++  
T Consensus       221 ~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi  300 (462)
T 2ece_A          221 HLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI  300 (462)
T ss_dssp             THHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             hhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence                 26789999999887777765431  12334545  99999876665      56688776654321 111111  


Q ss_pred             ecc----------------eeeEEEEEEcCCCCCEEE-EEECCCcEEEEeCC
Q psy4653         139 EGH----------------THYVMQIVINPKDNNTFA-SASLDRTVKVWQLG  173 (229)
Q Consensus       139 ~~~----------------~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~  173 (229)
                      ...                ......+.+++ +++.|. |.-..+.|.++|+.
T Consensus       301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          301 PAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECS
T ss_pred             CCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEec
Confidence            000                12356788898 455554 44467899999985

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.66  E-value=6.9e-05  Score=59.12  Aligned_cols=206  Identities=8%  Similarity=0.044  Sum_probs=128.2

Q ss_pred             ceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeE-EEEEecCcCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          17 RVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNV-KSFEVCDLPVRAAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      ...+++|++.+..|+ +-...+.|..++..++... ......-.....+++.+. +++.++-...+.|.+++.+......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            466889998655554 4456789999998876432 222222234567888874 4455555667789999987543322


Q ss_pred             EeccCCCceeEEEEcCCCCEEEEEe--CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          94 SFEAHSDYVRCVAVHPTQPFLLTSS--DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~~~~s~~--~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      ........-..+++.|.+..++.+.  ..+.|...+++... ...+....-.....+++++.++.++++-+..+.|..+|
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            2223334567899998755554443  35788888876432 12222222234578899886667777777888999999


Q ss_pred             CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +........+.+.......+++.   ...++.+-...+.|..+|..+++.+..+.
T Consensus       195 ~dG~~~~~~~~~~~~~P~glav~---~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          195 LDGTNRQAVVKGSLPHPFALTLF---EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTSCSCEEEECSCCSCEEEEEEE---TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCceEEEecCCCCCceEEEEe---CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            87543332233233345566663   23466777788999999987776555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.62  E-value=6.1e-06  Score=69.86  Aligned_cols=199  Identities=12%  Similarity=0.069  Sum_probs=130.9

Q ss_pred             ccCCCeEEEEEe-cCeEEEEEcCCCCeEEEEEecC-cCeEEEEE-c-CCCCEEEEEe------------------CCCeE
Q psy4653          24 HPTEPWMLASLY-NGHVHVWNHETNQNVKSFEVCD-LPVRAAKF-V-PRKNWIVTGS------------------DDMQV   81 (229)
Q Consensus        24 ~p~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~-~-~~~~~l~sg~------------------~d~~i   81 (229)
                      -|||+++++... ++.|.+-|+.+.++.+.+..-. .....+.+ . |+++++.+++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            458999999775 5689999999999877554322 34677887 4 8999988884                  24578


Q ss_pred             EEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q psy4653          82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM--------------------------------------LI  123 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~--------------------------------------~v  123 (229)
                      .+.|.++++.+.++.-.. .-.-++++|+++++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999998887765422 235678999999988777553                                      24


Q ss_pred             EEEecCC--ceeeeeeeecceeeEEEEEEcCCCCCEEE-EEECCCcEEEEeCCCCC------------ceEEEecCCCce
Q psy4653         124 KLWNWEK--AWACQQVFEGHTHYVMQIVINPKDNNTFA-SASLDRTVKVWQLGSAS------------PNFTLEGHEKGV  188 (229)
Q Consensus       124 ~lwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~------------~~~~~~~h~~~v  188 (229)
                      .+.|...  +......... ......+.++| |+.+++ ++..+.+|.++|+.+.+            ...+++. ....
T Consensus       257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP  333 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGP  333 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCE
T ss_pred             EEEeCcccCCceeEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCc
Confidence            4444443  1110111110 11234577888 566555 55588899999997542            1122221 1345


Q ss_pred             EEEEEEeCCCcCEEEEeeCCCeEEEEECCC----------CeEEEeeccC
Q psy4653         189 NCVDYYHGGDKPYLISGADDRLVKIWDYQN----------KTCVQTLESG  228 (229)
Q Consensus       189 ~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~----------~~~~~~~~~~  228 (229)
                      ..++|.  +++....+...|++|..||+.+          .+.+.+++.|
T Consensus       334 ~h~aF~--~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~  381 (595)
T 1fwx_A          334 LHTAFD--GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  381 (595)
T ss_dssp             EEEEEC--TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             ceEEEC--CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence            667874  4554455677899999999977          6677777654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.62  E-value=2.1e-05  Score=67.09  Aligned_cols=196  Identities=12%  Similarity=0.024  Sum_probs=122.3

Q ss_pred             CeEEEEEe------cCeEEEEEcCCCCeEEEEEecCcC--------------------------------------eEEE
Q psy4653          28 PWMLASLY------NGHVHVWNHETNQNVKSFEVCDLP--------------------------------------VRAA   63 (229)
Q Consensus        28 ~~l~~~~~------dg~v~~wd~~~~~~~~~~~~~~~~--------------------------------------v~~~   63 (229)
                      ..+++++.      ++.|..+|..+|+.+..+......                                      ...+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            35666654      799999999999998887643210                                      0235


Q ss_pred             EEcCCCCEEEEEeCC----------------CeEEEEECCCcceEEEeccC--CC----ceeE---EEEcCCCC---EEE
Q psy4653          64 KFVPRKNWIVTGSDD----------------MQVCVFNYNTLERFHSFEAH--SD----YVRC---VAVHPTQP---FLL  115 (229)
Q Consensus        64 ~~~~~~~~l~sg~~d----------------~~i~iwd~~~~~~~~~~~~h--~~----~i~~---v~~~~~~~---~~~  115 (229)
                      .+.++...+..++.+                +.|..+|.++++.+..++..  ..    .+..   +....+++   .++
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~  320 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS  320 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence            667776777666542                36899999999988776532  10    1111   22224563   567


Q ss_pred             EEeCCCcEEEEecCCceeeeeeeecc------------eeeE--------------------------EEEEEcCCCCCE
Q psy4653         116 TSSDDMLIKLWNWEKAWACQQVFEGH------------THYV--------------------------MQIVINPKDNNT  157 (229)
Q Consensus       116 s~~~d~~v~lwd~~~~~~~~~~~~~~------------~~~v--------------------------~~~~~~~~~~~~  157 (229)
                      .++.+|.+.+.|..+++..-......            ..++                          ..++++|.++ +
T Consensus       321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~  399 (571)
T 2ad6_A          321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-T  399 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-E
T ss_pred             EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-E
Confidence            78889999999987764432221111            0011                          1234555433 4


Q ss_pred             EEEEE-------------------------------------CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC
Q psy4653         158 FASAS-------------------------------------LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP  200 (229)
Q Consensus       158 l~s~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  200 (229)
                      +....                                     .++.+..||..+++.+++.+.... +........  +.
T Consensus       400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t~--gg  476 (571)
T 2ad6_A          400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTK--GG  476 (571)
T ss_dssp             EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEET--TT
T ss_pred             EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-ccceeEEEC--CC
Confidence            33322                                     357899999999998887764321 221111222  23


Q ss_pred             EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         201 YLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .++.++.|+.|+.||.++++.+-+++.
T Consensus       477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          477 LVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            677799999999999999999887764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.62  E-value=8.2e-05  Score=58.46  Aligned_cols=200  Identities=10%  Similarity=0.074  Sum_probs=119.8

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec--------------------CcCeEEEEEcC-CCCEEEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC--------------------DLPVRAAKFVP-RKNWIVTG   75 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~sg   75 (229)
                      .-.+++++|++..++++..++.|..||..+++.. .+...                    ......+.+.+ +++ |..+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            4567889999988889889999999998876543 22210                    12467899997 555 4445


Q ss_pred             eCCCeEEEEECCCcceEEEec----c-CCCceeEEEEcC-CCCEEEEEeC-----------------CCcEEEEecCCce
Q psy4653          76 SDDMQVCVFNYNTLERFHSFE----A-HSDYVRCVAVHP-TQPFLLTSSD-----------------DMLIKLWNWEKAW  132 (229)
Q Consensus        76 ~~d~~i~iwd~~~~~~~~~~~----~-h~~~i~~v~~~~-~~~~~~s~~~-----------------d~~v~lwd~~~~~  132 (229)
                      ...+.|..+|.++++. ..+.    + .....+.+++.+ ++.+.++-..                 ++.|..+|.....
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            4455588888775432 2221    1 123467899999 8987776533                 3678888875442


Q ss_pred             eeeeeeecceeeEEEEEEcCCCCC-EEEEEECCCcEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeC--
Q psy4653         133 ACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGAD--  207 (229)
Q Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--  207 (229)
                       ...... .......++++| ++. ++++-...+.|..+++....  ....+..... ...+++  ..++++.++...  
T Consensus       177 -~~~~~~-~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~--d~~G~l~va~~~~~  250 (322)
T 2fp8_A          177 -TTLLLK-ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR--NADGHFWVSSSEEL  250 (322)
T ss_dssp             -EEEEEE-EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE--CTTSCEEEEEEEET
T ss_pred             -EEEecc-CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE--CCCCCEEEEecCcc
Confidence             111111 112245678887 555 55555677899999987432  1112211112 555665  345555555433  


Q ss_pred             --------CCeEEEEECCCCeEEEeec
Q psy4653         208 --------DRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       208 --------d~~i~iwd~~~~~~~~~~~  226 (229)
                              .+.|..+|.. ++.+..+.
T Consensus       251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~  276 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF-GNILEVIP  276 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred             cccccCCCccEEEEECCC-CCEEEEEE
Confidence                    4567777764 55555554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.61  E-value=2.9e-05  Score=59.59  Aligned_cols=172  Identities=4%  Similarity=-0.093  Sum_probs=109.8

Q ss_pred             CeEEEEEecCc-CeEEEEEcCCCCEEEEEeC--CCeEEEEECCCcceEEEeccCC-CceeEEEEcCCCCEEEEEeCCCcE
Q psy4653          48 QNVKSFEVCDL-PVRAAKFVPRKNWIVTGSD--DMQVCVFNYNTLERFHSFEAHS-DYVRCVAVHPTQPFLLTSSDDMLI  123 (229)
Q Consensus        48 ~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~h~-~~i~~v~~~~~~~~~~s~~~d~~v  123 (229)
                      +.+..+..... ....+.|++++.+.++.+.  ++.|.++|+++++.+..+.... ..-..+++.. +..+++.-.++.+
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v   88 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEE
Confidence            34455543332 2578999988654444433  5789999999999887765322 2334566653 3445566678999


Q ss_pred             EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC--C---CceEEEEEEeCCC
Q psy4653         124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH--E---KGVNCVDYYHGGD  198 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~---~~v~~~~~~~~~~  198 (229)
                      .++|..+......+-.+ ...-..+  .+....+++| ..++.+.+.|..+.+.+..+.-.  .   ..++.+.|.   +
T Consensus        89 ~viD~~t~~v~~~i~~g-~~~g~gl--t~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~---d  161 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQ-MKDGWGL--ATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI---N  161 (266)
T ss_dssp             EEEETTTTEEEEEEECC-SSSCCEE--EECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---T
T ss_pred             EEEECCCCcEEEEEECC-CCCeEEE--EECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE---C
Confidence            99999876544443223 1111223  3333445555 46889999999888777766521  1   135667764   3


Q ss_pred             cCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         199 KPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +.+.++...++.|.+-|..+++.+.+++.
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence            44455555688999999999999998864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.60  E-value=0.0001  Score=57.97  Aligned_cols=206  Identities=11%  Similarity=0.010  Sum_probs=125.1

Q ss_pred             CceEEEEEccCCCeEEEE-EecCeEEEEEcCC----CCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc
Q psy4653          16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHET----NQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~   89 (229)
                      ....+++|++++..|+.+ ...+.|..++..+    ......+...-.....+++.+.++ +.++-...+.|.+.+.+..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            356789999976655554 5678999999886    222222222223457788887554 4455566788999998754


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEEEEe-CC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLLTSS-DD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      .....+......-..++++|.+..++.+. .. +.|...+++... ........-.....+++++.++.++++-...+.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            33222222334568999998666554443 33 688888875432 1222222233467888988666677777778899


Q ss_pred             EEEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         168 KVWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ..+|+...........  .......+++.   .+.++.+-...+.|..+|..+++.+.++
T Consensus       189 ~~~d~dg~~~~~~~~~~~~~~~P~giav~---~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          189 SSIDVNGGNRKTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEecCCCceEEEeecCCccCCcEEEEEE---CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            9999975433222222  12234566663   2346677778889999998777655554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.59  E-value=4.7e-05  Score=65.10  Aligned_cols=195  Identities=9%  Similarity=0.034  Sum_probs=121.0

Q ss_pred             eEEEEE------ecCeEEEEEcCCCCeEEEEEecCcC-----------------------------------------eE
Q psy4653          29 WMLASL------YNGHVHVWNHETNQNVKSFEVCDLP-----------------------------------------VR   61 (229)
Q Consensus        29 ~l~~~~------~dg~v~~wd~~~~~~~~~~~~~~~~-----------------------------------------v~   61 (229)
                      .+++++      .++.|.-+|..+|+.+..+......                                         -.
T Consensus       170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~  249 (582)
T 1flg_A          170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ  249 (582)
T ss_dssp             EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred             EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence            455554      3789999999999998876432110                                         02


Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCcceEEEecc--CCC----ceeE-E--EEc
Q psy4653          62 AAKFVPRKNWIVTGSD--------------------D----MQVCVFNYNTLERFHSFEA--HSD----YVRC-V--AVH  108 (229)
Q Consensus        62 ~~~~~~~~~~l~sg~~--------------------d----~~i~iwd~~~~~~~~~~~~--h~~----~i~~-v--~~~  108 (229)
                      .+++.|+.+.+..+..                    |    +.|..+|.++++.+..++.  |..    .+.. +  ...
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~  329 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK  329 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence            3456677777776653                    2    5899999999998877653  211    1111 1  221


Q ss_pred             -CCCC---EEEEEeCCCcEEEEecCCceeeeeeeecc------------eeeE---------------------------
Q psy4653         109 -PTQP---FLLTSSDDMLIKLWNWEKAWACQQVFEGH------------THYV---------------------------  145 (229)
Q Consensus       109 -~~~~---~~~s~~~d~~v~lwd~~~~~~~~~~~~~~------------~~~v---------------------------  145 (229)
                       .+++   .++.++.+|.+.++|.++++.+-..-...            ..++                           
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~  409 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL  409 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence             4563   67889999999999987764432211110            0000                           


Q ss_pred             -----EEEEEcCCCCCEEEEEE--------------------------------CCCcEEEEeCCCCCceEEEecCCCce
Q psy4653         146 -----MQIVINPKDNNTFASAS--------------------------------LDRTVKVWQLGSASPNFTLEGHEKGV  188 (229)
Q Consensus       146 -----~~~~~~~~~~~~l~s~~--------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v  188 (229)
                           ..++++|.++.+++...                                .++.|..||+.+++.+++.+......
T Consensus       410 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~  489 (582)
T 1flg_A          410 GGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLW  489 (582)
T ss_dssp             CSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCC
T ss_pred             cccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCc
Confidence                 02344554443333221                                36789999999999888776432211


Q ss_pred             E-EEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         189 N-CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       189 ~-~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      . .+..  .  +.+++.|+.|+.++.||.++++.+-.++.
T Consensus       490 ~g~~~t--a--gglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          490 AGVLAT--A--GNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SCCEEE--T--TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEe--C--CCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            1 1221  2  34788899999999999999998877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.56  E-value=4.8e-05  Score=65.18  Aligned_cols=187  Identities=11%  Similarity=0.034  Sum_probs=116.8

Q ss_pred             cCeEEEEEcCCCCeEEEEEecCcC--------------------------------------eEEEEEcCCCCEEEEEeC
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCDLP--------------------------------------VRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~~~--------------------------------------v~~~~~~~~~~~l~sg~~   77 (229)
                      +|.|.-+|.++|+.+..+......                                      -....+.++.+.+..++.
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            799999999999998887643211                                      013456677788877766


Q ss_pred             C----------------CeEEEEECCCcceEEEeccCCC------ce---eEEEEc-CCC---CEEEEEeCCCcEEEEec
Q psy4653          78 D----------------MQVCVFNYNTLERFHSFEAHSD------YV---RCVAVH-PTQ---PFLLTSSDDMLIKLWNW  128 (229)
Q Consensus        78 d----------------~~i~iwd~~~~~~~~~~~~h~~------~i---~~v~~~-~~~---~~~~s~~~d~~v~lwd~  128 (229)
                      +                +.|..+|.++++.+..++....      ..   .-+... .++   +.++.++.+|.+.+.|.
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence            5                3799999999998877654211      11   112332 456   46777889999999998


Q ss_pred             CCceeeeeeeec------------ceeeE--------------------------EEEEEcCCCCCEEEEE---------
Q psy4653         129 EKAWACQQVFEG------------HTHYV--------------------------MQIVINPKDNNTFASA---------  161 (229)
Q Consensus       129 ~~~~~~~~~~~~------------~~~~v--------------------------~~~~~~~~~~~~l~s~---------  161 (229)
                      ++++.+-.....            ...++                          ..++++|.. .++...         
T Consensus       341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~  419 (599)
T 1w6s_A          341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR-ELFFMGINHICMDWE  419 (599)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-TEEEEEEECEEEEEE
T ss_pred             CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC-CEEEEeccccceeee
Confidence            776443221100            00011                          012334422 222211         


Q ss_pred             ------------------------E------CCCcEEEEeCCCCCceEEEecCCCceEE-EEEEeCCCcCEEEEeeCCCe
Q psy4653         162 ------------------------S------LDRTVKVWQLGSASPNFTLEGHEKGVNC-VDYYHGGDKPYLISGADDRL  210 (229)
Q Consensus       162 ------------------------~------~d~~i~~wd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~d~~  210 (229)
                                              +      .++.+..||+.+++.+++.+........ +..    .+.+++.++.|+.
T Consensus       420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t----agg~vf~gt~dg~  495 (599)
T 1w6s_A          420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT----AGDLVFYGTLDGY  495 (599)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE----TTTEEEEECTTSE
T ss_pred             cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe----cCCEEEEECCCCe
Confidence                                    1      3578999999999988877532111111 221    2346778999999


Q ss_pred             EEEEECCCCeEEEeecc
Q psy4653         211 VKIWDYQNKTCVQTLES  227 (229)
Q Consensus       211 i~iwd~~~~~~~~~~~~  227 (229)
                      ++.||.++|+.+-+.+.
T Consensus       496 l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          496 LKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCCEEEEeeC
Confidence            99999999998876653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.54  E-value=1.1e-05  Score=70.23  Aligned_cols=194  Identities=7%  Similarity=0.103  Sum_probs=121.4

Q ss_pred             CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcC-----------eEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          27 EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLP-----------VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        27 ~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      +..+++++.++.|.-+|..+|+.+..+......           ...+.+  .+..++.++.|+.+..+|.++++.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            456778888999999999999999887643210           011122  3567888889999999999999988776


Q ss_pred             ccCC----Ccee-EEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeeee--cc---------------------
Q psy4653          96 EAHS----DYVR-CVAVHPTQPFLLTSSD------DMLIKLWNWEKAWACQQVFE--GH---------------------  141 (229)
Q Consensus        96 ~~h~----~~i~-~v~~~~~~~~~~s~~~------d~~v~lwd~~~~~~~~~~~~--~~---------------------  141 (229)
                      +...    ..+. ...+. ++ .++.+..      ++.|..+|.+++...-....  +.                     
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            5421    1111 11111 33 3444332      58899999877644322210  00                     


Q ss_pred             -------eeeEEEEEEcCCCCCEEEEEECCC-------------------cEEEEeCCCCCceEEEec--CC-------C
Q psy4653         142 -------THYVMQIVINPKDNNTFASASLDR-------------------TVKVWQLGSASPNFTLEG--HE-------K  186 (229)
Q Consensus       142 -------~~~v~~~~~~~~~~~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~--h~-------~  186 (229)
                             ......+.+.|. ..++..+..++                   .|..+|..+++.++..+.  |.       .
T Consensus       222 ~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             HHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                   000113456663 45666666555                   499999999999888764  22       1


Q ss_pred             ceEEEEEEeCCC-cCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         187 GVNCVDYYHGGD-KPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       187 ~v~~~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +....++...+. ...++.++.+|.+.++|.++|+.+...
T Consensus       301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            222223222222 126888999999999999999988543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.46  E-value=0.00025  Score=62.68  Aligned_cols=206  Identities=11%  Similarity=0.017  Sum_probs=126.6

Q ss_pred             CceEEEEEccCCCeEE-EEEecCeEEEEEcCCC----CeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc
Q psy4653          16 DRVKCCDLHPTEPWML-ASLYNGHVHVWNHETN----QNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL   89 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~   89 (229)
                      ..+.+++|++....|+ +-...+.|+.+++...    .....+.........+++.+.++ +.++-...+.|.+.+++..
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            4577899998655554 4456788998988753    22222222223466788887765 4555556778999998755


Q ss_pred             ceEEEeccCCCceeEEEEcCCCCEEE-EEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      .....+......-..|+++|....|+ +-... +.|...++... ....+....-.....+++++..+.++++-....+|
T Consensus       504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            43333333334578999999755554 44333 68888888644 22233332334567888887667777776777899


Q ss_pred             EEEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         168 KVWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ...++........+...  -.....+++.  + ..+.++-...+.|...|..+++.+.++
T Consensus       583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~--~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          583 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--E-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEE--T-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEecCCCceEEEecCCCccCCCCEEEEe--C-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            99998755444434332  2234566652  2 246666677788888887777655554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00032  Score=56.80  Aligned_cols=198  Identities=12%  Similarity=0.065  Sum_probs=121.6

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEe
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      .-.|.+..+ .++|+.+ ....|+..++.+........ .......+.|.+.++.| .+-...+.|..++++.......+
T Consensus        78 ~~~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           78 RRSCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SSCEEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             CCeECCccc-cceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            344555555 3444444 34678888888765544333 23457889999866554 45456678989998765433333


Q ss_pred             ccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCC
Q psy4653          96 EAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLG  173 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~  173 (229)
                      .........+++.+.+ .++++-...+.|.+.+++... ...+..........++++|..+.++++-... +.|...++.
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            3223345678998754 455666677889998886432 2222222234467888888666677776655 788888886


Q ss_pred             CCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         174 SASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       174 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ...........-...+.+++.+. ++.+.++-+..+.|..+|+...
T Consensus       234 G~~~~~~~~~~~~~PnGlavd~~-~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          234 GSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEEGG-GTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCcEEEEECCCCCeeeEEEeCC-CCEEEEEECCCCEEEEEeCCCC
Confidence            54433333333334677888543 3345566667788998888643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.45  E-value=2.1e-05  Score=66.65  Aligned_cols=200  Identities=12%  Similarity=0.087  Sum_probs=128.7

Q ss_pred             ceEEEEE-c-cCCCeEEEEE------------------ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe
Q psy4653          17 RVKCCDL-H-PTEPWMLASL------------------YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus        17 ~v~~~~~-~-p~~~~l~~~~------------------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~   76 (229)
                      ....+++ . |++.++++++                  .++.|.+.|..+.+......... .-..+.++|+|+++++.+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence            4667777 4 9999999884                  45789999999998888877544 345677899999988887


Q ss_pred             CCC--------------------------------------eEEEEECCC--cce-EEEeccCCCceeEEEEcCCCCEEE
Q psy4653          77 DDM--------------------------------------QVCVFNYNT--LER-FHSFEAHSDYVRCVAVHPTQPFLL  115 (229)
Q Consensus        77 ~d~--------------------------------------~i~iwd~~~--~~~-~~~~~~h~~~i~~v~~~~~~~~~~  115 (229)
                      .+.                                      .+.+.|..+  ++. +..+... ..-.++.++||+++++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEE
Confidence            543                                      245555554  222 2333221 2345899999999776


Q ss_pred             E-EeCCCcEEEEecCCcee-----------eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC---------
Q psy4653         116 T-SSDDMLIKLWNWEKAWA-----------CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS---------  174 (229)
Q Consensus       116 s-~~~d~~v~lwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------  174 (229)
                      + +..+.+|.++|+.+...           .....+ -......++|+| ++..+++...|+.|..||+..         
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~  370 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK  370 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence            4 45678999999975421           111111 123357788998 566666778999999999866         


Q ss_pred             -CCceEEEecCCCceE-EEEE--EeCCCcCEEEEee---CCCe----------EEEEECCCCe
Q psy4653         175 -ASPNFTLEGHEKGVN-CVDY--YHGGDKPYLISGA---DDRL----------VKIWDYQNKT  220 (229)
Q Consensus       175 -~~~~~~~~~h~~~v~-~~~~--~~~~~~~~l~s~s---~d~~----------i~iwd~~~~~  220 (229)
                       ...+..+.-|..+-. +...  ..++++++|+++.   .|+-          -.++|+..++
T Consensus       371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence             344555666654321 1100  1245677777754   3442          2889996554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.45  E-value=0.00027  Score=55.17  Aligned_cols=198  Identities=9%  Similarity=-0.014  Sum_probs=115.3

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC-C-eEEEEECCCcceEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD-M-QVCVFNYNTLERFH   93 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-~-~i~iwd~~~~~~~~   93 (229)
                      .....++|+|++..+++...++.|..||..+. ....+. .......+.+.++++++++.... + .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999986666667899999998763 333333 23457889999999976665432 2 46667777665432


Q ss_pred             Eec-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeee--------eeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          94 SFE-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQQ--------VFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        94 ~~~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~~--------~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      ... ........++..+.+..+++-..++.|..+|..... ....        ...+.......+  ++..+.++++-..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            221 112234556655555455555568888888875431 1110        000111122333  5533346667777


Q ss_pred             CCcEEEEeCCC-CCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         164 DRTVKVWQLGS-ASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       164 d~~i~~wd~~~-~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      .++|..+++.. +..  ...+.. ......+++.  .++++.++....+.|.++|.. ++.
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd--~dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFD--VEGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEB--TTCCEEEECBTTCCEEEECTT-CCE
T ss_pred             CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEEC--CCCCEEEEeCCCCeEEEECCC-CCE
Confidence            88999999864 221  111111 1123345553  355666666677889999976 544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.45  E-value=0.0002  Score=56.18  Aligned_cols=195  Identities=14%  Similarity=-0.010  Sum_probs=115.4

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--c---CcCeEEEEEcC-CCCEEEEEeC-------------
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--C---DLPVRAAKFVP-RKNWIVTGSD-------------   77 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~---~~~v~~~~~~~-~~~~l~sg~~-------------   77 (229)
                      ....+++.|+...|+++...+.|..+|..+++. ..+..  .   ......+.+.+ +|++.++-..             
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            578899998333455555456688898876543 22211  1   12467899999 8887666432             


Q ss_pred             ----CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCcee-eeeeeecceeeEEEEEEc
Q psy4653          78 ----DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWA-CQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus        78 ----d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~  151 (229)
                          ++.|..+|.++++... +......-+.++++|++..+. +-...+.|.++++..... ....+....+ ...+.+.
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d  237 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN  237 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred             ccCCCceEEEEeCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence                3668888877654322 211123346799999998655 446678999999864210 1111111112 5667888


Q ss_pred             CCCCCEEEEEEC----------CCcEEEEeCCCCCceEEEecCC----CceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         152 PKDNNTFASASL----------DRTVKVWQLGSASPNFTLEGHE----KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       152 ~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      + ++.+.++...          .+.|..+|.. ++.+..+....    ..+..+.+ .  ++.+.++...++.|..+++.
T Consensus       238 ~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~--~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          238 A-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-H--DGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             T-TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-E--TTEEEEECSSCSEEEEEEC-
T ss_pred             C-CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-e--CCEEEEeecCCCceEEEecc
Confidence            7 5677766544          4567888764 55555554321    23445554 2  34566676778899999986


Q ss_pred             CC
Q psy4653         218 NK  219 (229)
Q Consensus       218 ~~  219 (229)
                      ..
T Consensus       313 ~~  314 (322)
T 2fp8_A          313 KK  314 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.45  E-value=0.00033  Score=55.95  Aligned_cols=200  Identities=13%  Similarity=0.074  Sum_probs=123.5

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCcceEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~~~~   93 (229)
                      .+...|.+..+ .++|+.+. ...|+..++.......... .......++|.+.++.|. +-...+.|..++++......
T Consensus        33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            45566777776 34444443 4568888887655433333 234578999998666554 44566788889887654333


Q ss_pred             EeccCCCceeEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEe
Q psy4653          94 SFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQ  171 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd  171 (229)
                      ...........+++.+.+ .++++-...+.|.+.+++... ...+..........++++|.++.++++-... +.|...+
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            332223445789998754 455666677899999986542 2222322333457888888667777776666 7888888


Q ss_pred             CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +........+...-...+.+++.+. ++.+..+-+..+.|..+|+...
T Consensus       189 ~dG~~~~~~~~~~~~~PnGla~d~~-~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          189 MDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             TTSCSCEESCCSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCcEEEEECCCCCcceEEEeCC-CCEEEEEECCCCEEEEEeCCCC
Confidence            8654332222222334677887533 3445566666788999988643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.43  E-value=0.00014  Score=55.45  Aligned_cols=169  Identities=6%  Similarity=-0.011  Sum_probs=109.8

Q ss_pred             CeEEEEEecCcC-eEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-ceeEEEEcCCCCEEEEEeCCCcEEE
Q psy4653          48 QNVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSD-YVRCVAVHPTQPFLLTSSDDMLIKL  125 (229)
Q Consensus        48 ~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~v~~~~~~~~~~s~~~d~~v~l  125 (229)
                      +.+..|.....+ ...+.|+ .+.+..+.+.+|.|+.+|+++++.+..+ -... +-..+++..+ .+++..-.++.+.+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEE
Confidence            344555433322 4788887 4567777788889999999999987766 3322 2244666543 45555667899999


Q ss_pred             EecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec--CC---CceEEEEEEeCCCcC
Q psy4653         126 WNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG--HE---KGVNCVDYYHGGDKP  200 (229)
Q Consensus       126 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--h~---~~v~~~~~~~~~~~~  200 (229)
                      +|.++.......-.+..  -..+..   ++..|+.+..+++|.++|..+.+.+..+.-  +.   ..++.+.|.   ++.
T Consensus       121 ~D~~Tl~~~~ti~~~~e--GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~---dG~  192 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGE--GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA---NGV  192 (268)
T ss_dssp             EETTTTEEEEEEECSSC--CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---TTE
T ss_pred             EECCcCcEEEEEeCCCc--eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe---CCE
Confidence            99987754433322211  123333   344555445688999999988887776643  22   134667764   344


Q ss_pred             EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         201 YLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +.+....+..|.+-|.++++.+.+++.
T Consensus       193 lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          193 IYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             EEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             EEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence            555555788999999999999998874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.39  E-value=0.00021  Score=54.44  Aligned_cols=169  Identities=9%  Similarity=0.042  Sum_probs=107.3

Q ss_pred             eEEEEEecCcC-eEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEeccCCCc-eeEEEEcCCCCEEEEEeCCCcEE
Q psy4653          49 NVKSFEVCDLP-VRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSFEAHSDY-VRCVAVHPTQPFLLTSSDDMLIK  124 (229)
Q Consensus        49 ~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~-i~~v~~~~~~~~~~s~~~d~~v~  124 (229)
                      .+..|.....+ ...+.|+ ++.+..+.+.+|  .|+.+|+++++.+..+...... -..+++..+ +.++..-.++.+.
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~-~ly~ltw~~~~v~  110 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD-KIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT-EEEEEESSSSEEE
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC-EEEEEEeeCCEEE
Confidence            34555433222 4778888 666666666666  8999999999988877543322 234555432 3444555688999


Q ss_pred             EEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecC----C-CceEEEEEEeCCCc
Q psy4653         125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH----E-KGVNCVDYYHGGDK  199 (229)
Q Consensus       125 lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h----~-~~v~~~~~~~~~~~  199 (229)
                      ++|.++.......-.+..+  ..+.  +....+++|. .+.+|.++|..+.+.+..+.-.    . ..++.+.|.   ++
T Consensus       111 v~D~~t~~~~~ti~~~~eG--~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~---~G  182 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEG--WGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV---DG  182 (262)
T ss_dssp             EEETTTCCEEEEEECSSCC--CCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE---TT
T ss_pred             EEECccCcEEEEEECCCCc--eEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE---CC
Confidence            9999876544333222111  2333  3233455554 4778999999888777766432    1 235567764   34


Q ss_pred             CEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         200 PYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       200 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .+.+....+..|.+.|.++++.+.+++.
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            4555555788999999999999998875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.36  E-value=0.00013  Score=62.33  Aligned_cols=183  Identities=8%  Similarity=-0.029  Sum_probs=112.4

Q ss_pred             EEEEccCCCeEEEEEe--------------------c----CeEEEEEcCCCCeEEEEEecC----------cCeEEEEE
Q psy4653          20 CCDLHPTEPWMLASLY--------------------N----GHVHVWNHETNQNVKSFEVCD----------LPVRAAKF   65 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~--------------------d----g~v~~wd~~~~~~~~~~~~~~----------~~v~~~~~   65 (229)
                      ..++.|+...++.+..                    |    +.|..+|..+|+.+..++...          .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677888887877663                    2    689999999999998886421          1221 222


Q ss_pred             c-CCCC---EEEEEeCCCeEEEEECCCcceEEEeccCC-------------Cce--------------------------
Q psy4653          66 V-PRKN---WIVTGSDDMQVCVFNYNTLERFHSFEAHS-------------DYV--------------------------  102 (229)
Q Consensus        66 ~-~~~~---~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i--------------------------  102 (229)
                      . .+|+   .++.++.+|.+.++|.++++.+..+....             ..+                          
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4564   78889999999999999998876543321             000                          


Q ss_pred             ------eEEEEcCCCCEEEEEe---------------------------------CCCcEEEEecCCceeeeeeeeccee
Q psy4653         103 ------RCVAVHPTQPFLLTSS---------------------------------DDMLIKLWNWEKAWACQQVFEGHTH  143 (229)
Q Consensus       103 ------~~v~~~~~~~~~~s~~---------------------------------~d~~v~lwd~~~~~~~~~~~~~~~~  143 (229)
                            ..++++|+..++++..                                 .++.|..||+.+++..-+...+.  
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--  486 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--  486 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--
Confidence                  1346666655544432                                 25778888887764432222111  


Q ss_pred             eEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCce-EEEEEEeCCCcCEEEEeeC
Q psy4653         144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV-NCVDYYHGGDKPYLISGAD  207 (229)
Q Consensus       144 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~  207 (229)
                      ++....+.. .+.+++.|+.|+.++.+|.++++.+++++...... .-+.|... ...|+++.+.
T Consensus       487 ~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~-G~qYv~~~~G  549 (582)
T 1flg_A          487 PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD-GEQYLGVTVG  549 (582)
T ss_dssp             CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET-TEEEEEEEEC
T ss_pred             CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC-CEEEEEEEcc
Confidence            111101111 24577779999999999999999999887643221 12455333 3346665443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.36  E-value=0.00053  Score=54.45  Aligned_cols=203  Identities=9%  Similarity=0.144  Sum_probs=123.2

Q ss_pred             EEEEEccC---CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCC----CC---EEEEEeC---CCeEEEEE
Q psy4653          19 KCCDLHPT---EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPR----KN---WIVTGSD---DMQVCVFN   85 (229)
Q Consensus        19 ~~~~~~p~---~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~sg~~---d~~i~iwd   85 (229)
                      .++..||.   ...++++...+-+.++|+ +|+.+..+..  ..++.+..-|.    ++   ++++...   +++|.+|+
T Consensus        29 pavw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~  105 (355)
T 3amr_A           29 PAIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (355)
T ss_dssp             EEEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred             ccEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence            35666665   345666778899999999 8888888753  34555555552    22   2333333   46899997


Q ss_pred             CC-CcceEEEecc------CC-CceeEEEE--cCC-CC-EEEEEeCCCcEEEEecCCc------eeeeeeeecceeeEEE
Q psy4653          86 YN-TLERFHSFEA------HS-DYVRCVAV--HPT-QP-FLLTSSDDMLIKLWNWEKA------WACQQVFEGHTHYVMQ  147 (229)
Q Consensus        86 ~~-~~~~~~~~~~------h~-~~i~~v~~--~~~-~~-~~~s~~~d~~v~lwd~~~~------~~~~~~~~~~~~~v~~  147 (229)
                      +. ....+..+..      .. ..+..+++  +|. +. ++++...++.+..|++...      ....+.|... +.+..
T Consensus       106 iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~Eg  184 (355)
T 3amr_A          106 IDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEG  184 (355)
T ss_dssp             ECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEE
T ss_pred             ECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcce
Confidence            63 2223444421      11 44566777  774 44 6788888999999998421      1222334322 34556


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCCCC-----CceEEEe-cC-CCceEEEEEEeCCCcC-EEEEee-CCCeEEEEECC-
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLGSA-----SPNFTLE-GH-EKGVNCVDYYHGGDKP-YLISGA-DDRLVKIWDYQ-  217 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~-~h-~~~v~~~~~~~~~~~~-~l~s~s-~d~~i~iwd~~-  217 (229)
                      +...+. ...|..+-.|.-|..++....     +.+..+. ++ ...+..+++++..++. +|++.+ .+.+..+||.+ 
T Consensus       185 cvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          185 MAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEETT-TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEcCC-CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            666764 457777888866666665422     2222221 22 2367888887554444 566555 67899999997 


Q ss_pred             CCeEEEeec
Q psy4653         218 NKTCVQTLE  226 (229)
Q Consensus       218 ~~~~~~~~~  226 (229)
                      +.+.+..+.
T Consensus       264 ~~~~vg~f~  272 (355)
T 3amr_A          264 KNKYVADFR  272 (355)
T ss_dssp             TCCEEEEEE
T ss_pred             CCcEEEEEE
Confidence            677777663

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.35  E-value=9.3e-05  Score=64.15  Aligned_cols=111  Identities=9%  Similarity=0.088  Sum_probs=72.9

Q ss_pred             EEEEcc-CCCeEEEEEecC-----------eEEEEEcCCCCeEEE--EEe-cCcCeEEEEEcCCCCEEEEEeC-CCeEEE
Q psy4653          20 CCDLHP-TEPWMLASLYNG-----------HVHVWNHETNQNVKS--FEV-CDLPVRAAKFVPRKNWIVTGSD-DMQVCV   83 (229)
Q Consensus        20 ~~~~~p-~~~~l~~~~~dg-----------~v~~wd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~sg~~-d~~i~i   83 (229)
                      ++++.| ++..++.|+.++           .+.+||..+++....  ... ......++.+..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556777 888888887543           688999998764332  211 2223445778889999999984 457999


Q ss_pred             EECCCcceEEEeccCCCce-eEEEEcCCCCEEEEEe-CC-----CcEEEEecCC
Q psy4653          84 FNYNTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSS-DD-----MLIKLWNWEK  130 (229)
Q Consensus        84 wd~~~~~~~~~~~~h~~~i-~~v~~~~~~~~~~s~~-~d-----~~v~lwd~~~  130 (229)
                      ||..+.+....-.-+..+- .++++.+++++++.|+ .+     ..+.+||...
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            9988765432212122222 3456667889888887 34     5688999754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.32  E-value=0.00027  Score=60.57  Aligned_cols=161  Identities=9%  Similarity=-0.010  Sum_probs=102.5

Q ss_pred             EEEEccCCCeEEEEEec----------------CeEEEEEcCCCCeEEEEEecCc----------CeEEEEEc-CCC---
Q psy4653          20 CCDLHPTEPWMLASLYN----------------GHVHVWNHETNQNVKSFEVCDL----------PVRAAKFV-PRK---   69 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~d----------------g~v~~wd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---   69 (229)
                      ..++.|+...++.+..+                +.|..+|..+|+.+..++....          ++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            45677788888887655                4899999999999988875321          121 2222 456   


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEeccCC-------------Cce--------------------------eEEEEcCC
Q psy4653          70 NWIVTGSDDMQVCVFNYNTLERFHSFEAHS-------------DYV--------------------------RCVAVHPT  110 (229)
Q Consensus        70 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i--------------------------~~v~~~~~  110 (229)
                      +.++.++.+|.+.++|.++++.+...+...             ..+                          ..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            467888999999999999998876543110             011                          14566666


Q ss_pred             CCEEEEEe---------------------------------------CCCcEEEEecCCceeeeeeeecceeeEEEEEEc
Q psy4653         111 QPFLLTSS---------------------------------------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN  151 (229)
Q Consensus       111 ~~~~~s~~---------------------------------------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~  151 (229)
                      ..++++..                                       .++.|..||+.+++..-+...+.  +...-.+.
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~  481 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMA  481 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEE
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceE
Confidence            55554432                                       34677778876654332221111  11100011


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCCceEEEecC
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGH  184 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h  184 (229)
                      . .+.+++.++.|+.++.+|.++++.+++.+-.
T Consensus       482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             E-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            1 3457777999999999999999999888653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.28  E-value=0.0003  Score=59.99  Aligned_cols=161  Identities=9%  Similarity=-0.023  Sum_probs=103.2

Q ss_pred             EEEEccCCCeEEEEEec----------------CeEEEEEcCCCCeEEEEEecC----------cCeEEEEEcCCCC---
Q psy4653          20 CCDLHPTEPWMLASLYN----------------GHVHVWNHETNQNVKSFEVCD----------LPVRAAKFVPRKN---   70 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~d----------------g~v~~wd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---   70 (229)
                      .+++.|+...++.+..+                +.|..+|..+|+.+..++...          .++. +...++|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            45677877777776532                369999999999998886431          1221 22224563   


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEeccCC-------------Cce--------------------------eEEEEcCCC
Q psy4653          71 WIVTGSDDMQVCVFNYNTLERFHSFEAHS-------------DYV--------------------------RCVAVHPTQ  111 (229)
Q Consensus        71 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i--------------------------~~v~~~~~~  111 (229)
                      .++.++.+|.+.++|.++++.+..++...             ..+                          ..++|+|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            67788999999999999998876543211             011                          235778877


Q ss_pred             CEEEEEe-------------------------------------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653         112 PFLLTSS-------------------------------------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus       112 ~~~~s~~-------------------------------------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      .+++...                                     .++.|..||+.+++..-+...+.  .+....+.. .
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~~~~~t-~  474 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYT-K  474 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEE-T
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--CccceeEEE-C
Confidence            7665543                                     34788888887664432221111  111111111 2


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCceEEEecC
Q psy4653         155 NNTFASASLDRTVKVWQLGSASPNFTLEGH  184 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h  184 (229)
                      +.+++.++.|+.++.+|.++++.+++++..
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            456677899999999999999999888643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.26  E-value=1.5e-05  Score=69.59  Aligned_cols=207  Identities=12%  Similarity=0.014  Sum_probs=122.9

Q ss_pred             ceEEEEEccCCCeEEEE-EecCeEEEEEcCC----CCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCcc
Q psy4653          17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHET----NQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      .+..++|++.+..|+.+ ...+.|+.+++.+    ......+.........+++.+.+ ++.++-...+.|.+++++...
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            45678999877666665 4568899999875    22212211111234557777544 445554556789999887544


Q ss_pred             eEEEeccCCCceeEEEEcCCCCE-EEEEeCC-CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPF-LLTSSDD-MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d-~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ....+......-..++++|.+.. +++-... +.|.+.++..... ..+....-.....++++|..+.++++-+..++|.
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            33322222234568899986554 4443333 6888888754321 1111111223467889886677888877888999


Q ss_pred             EEeCCCCCceEEEec--CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         169 VWQLGSASPNFTLEG--HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .+++........+..  .......+++.  ++ .++++....+.|..+|..+++.+.++..
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glavd--~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAVF--ED-KVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEEE--TT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEEE--CC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            999865333222221  11123344542  23 4677777889999999988888877653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.24  E-value=0.0007  Score=51.02  Aligned_cols=170  Identities=7%  Similarity=-0.005  Sum_probs=108.5

Q ss_pred             CeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEeccCCCc-eeEEEEcCCCCEEEEEeCCCcE
Q psy4653          48 QNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSFEAHSDY-VRCVAVHPTQPFLLTSSDDMLI  123 (229)
Q Consensus        48 ~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~-i~~v~~~~~~~~~~s~~~d~~v  123 (229)
                      +.+..|+... .....+.|++ +.+..+.+.+|  .|+.+|+++++.+......... -..+++.. ++.+...-.++.+
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v   87 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEE
Confidence            3455554322 2367888886 55556656654  8999999999988876544332 23455543 3444556678999


Q ss_pred             EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCC-----CceEEEEEEeCCC
Q psy4653         124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHE-----KGVNCVDYYHGGD  198 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~  198 (229)
                      .++|..+.......-.+..+  ..+..  ....+++|- .+++|.++|..+.+.+..++-..     ..++.+.+.   +
T Consensus        88 ~v~D~~tl~~~~ti~~~~~G--wglt~--dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~---~  159 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEG--WALTS--DDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV---N  159 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCC--CEEEE--CSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---T
T ss_pred             EEEECCcCcEEEEEeCCCCc--eEEee--CCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe---C
Confidence            99999876544433222222  33433  234566665 47889999998887777665321     235566663   3


Q ss_pred             cCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         199 KPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +.+.+....+..|.+-|.++++.+.+++.
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred             CEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            44455555688999999999999998874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=0.00097  Score=54.79  Aligned_cols=155  Identities=7%  Similarity=0.075  Sum_probs=97.0

Q ss_pred             ceEEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CC----eEEEEECCCc-
Q psy4653          17 RVKCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DM----QVCVFNYNTL-   89 (229)
Q Consensus        17 ~v~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~----~i~iwd~~~~-   89 (229)
                      .-..++++| ++..|+++...+.|+.+|..+++...... ....-..++|+++++.|..+.. ++    .+..++.+.. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457889998 46667666655899999998866544433 3345788999999995555543 22    2333343221 


Q ss_pred             ceEEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCC-EEEEEECCCcE
Q psy4653          90 ERFHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN-TFASASLDRTV  167 (229)
Q Consensus        90 ~~~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i  167 (229)
                      .....+.. ......++++| ++.++++-..++.|..++............+.......++++| ++. ++++-...+.|
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQHYI  294 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCCEE
Confidence            11122221 23346788999 6777777777889999998754321111111122356789998 566 66676788899


Q ss_pred             EEEeCCC
Q psy4653         168 KVWQLGS  174 (229)
Q Consensus       168 ~~wd~~~  174 (229)
                      ..++...
T Consensus       295 ~~~~~d~  301 (430)
T 3tc9_A          295 LRSDYDW  301 (430)
T ss_dssp             EEEEEET
T ss_pred             EEEeCCc
Confidence            9988653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.14  E-value=0.0018  Score=55.72  Aligned_cols=206  Identities=9%  Similarity=0.037  Sum_probs=120.8

Q ss_pred             CceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCe-EEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceE
Q psy4653          16 DRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQN-VKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      ....+++|++.+..++.+. ..+.|..+++..... ...+...-.....+++.+.++ +..+-...+.|.+.+.+.....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            3577999999777666654 568899999876532 222222224678899998655 4555556788999998754332


Q ss_pred             EEeccCCCceeEEEEcCCCCEE-EEE-eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFL-LTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW  170 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~-~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w  170 (229)
                      ..+...-..-..|++.|.+..| ++- +..+.|...+++.. ....+....-.....+++++.++.++++-...+.|...
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            2222233345689999875544 443 22456777776543 22222222233467888888666777777778899999


Q ss_pred             eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      |+........+.+.......+++.  ++ .+..|-...+.|...|..+++.+..+
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~~--~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTLF--ED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             SSSCCEEC---------CCCEEES--SS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             cCCCCccEEEEeCCCCCceEEEEe--CC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            986543322222111122345552  23 45666667888999998877655444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.13  E-value=0.0039  Score=55.15  Aligned_cols=195  Identities=9%  Similarity=0.075  Sum_probs=122.0

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE--------ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE--------VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ...|.++...+++. |..|+.++-|..||..+++......        .....|.++...++++.|-.|+.++-|..+|.
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            45699999988876 6667778789999998865533211        11346889988888885667777777999998


Q ss_pred             CCcceEEEec----cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee------cceeeEEEEEEcCCCCC
Q psy4653          87 NTLERFHSFE----AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE------GHTHYVMQIVINPKDNN  156 (229)
Q Consensus        87 ~~~~~~~~~~----~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~  156 (229)
                      ++++......    .+...|.++...+++.+.+.. . +-+.+||..... ......      -....|..+...+ ++.
T Consensus       435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~-~g~  510 (795)
T 4a2l_A          435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTLFRDS-HKR  510 (795)
T ss_dssp             TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE-EEECCBCTTCCBCCCCCEEEEEECT-TCC
T ss_pred             CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe-EEEccccccccccCCceEEEEEECC-CCC
Confidence            8765432211    134578999998888765554 3 458889876542 221111      1234577887765 454


Q ss_pred             EEEEEECCCcEEEEeCCCCCceEEEe-------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         157 TFASASLDRTVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       157 ~l~s~~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      +.+ |.. +-+..||..+...  .+.       .....+.++..  ..++.+ ..|+.. -+..||.++++..
T Consensus       511 lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~--d~~g~l-WigT~~-Gl~~~d~~~~~~~  575 (795)
T 4a2l_A          511 LWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE--ASNGII-WVGTRE-GFYCFNEKDKQIK  575 (795)
T ss_dssp             EEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE--CTTSCE-EEEESS-CEEEEETTTTEEE
T ss_pred             EEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE--CCCCCE-EEEeCC-CceeECCCCCcEE
Confidence            444 444 4588888765543  222       11234666654  344544 444444 5888898777553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.07  E-value=0.0043  Score=53.47  Aligned_cols=204  Identities=7%  Similarity=-0.051  Sum_probs=128.4

Q ss_pred             CceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEE
Q psy4653          16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      ....+++|++.+..++.+ ..++.|..+++........+.........+++.+.++ +..+-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            357799999977666655 4678999999887654444332223466788887655 44555556788998886543322


Q ss_pred             EeccCCCceeEEEEcCCCCEE-EEE-eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          94 SFEAHSDYVRCVAVHPTQPFL-LTS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~~~-~s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      .+...-..-..|+++|....| ++- +..+.|...+++... ...+.. .-.....+++++..+.++++-...+.|...|
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d  194 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSN  194 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence            222233445799999855544 443 235678888776432 222222 2344678888886666777777888999999


Q ss_pred             CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      +..... ..+...-.....+++.  + ..+..|-...+.|...|..+++....+
T Consensus       195 ~dG~~~-~v~~~~l~~P~glav~--~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          195 MLGLNR-EVIADDLPHPFGLTQY--Q-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             TTSCSC-EEEEECCSCEEEEEEE--T-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCce-EEeeccCCCceEEEEE--C-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            876544 3333333345566763  2 345666667889999997777644444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.99  E-value=0.0072  Score=53.42  Aligned_cols=193  Identities=8%  Similarity=-0.008  Sum_probs=118.9

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE----ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE----VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      ...|.++...+++..|..|+.++-|..+|..+++......    .....|.++...+++++.+.. .+| +..||.++++
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCe
Confidence            3579999998888757778888889999999876533211    123468899888888765544 444 8889987764


Q ss_pred             eEEEec------cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee------ecceeeEEEEEEcCCCCCEE
Q psy4653          91 RFHSFE------AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF------EGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        91 ~~~~~~------~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l  158 (229)
                      ......      .....|.++...+++.+.+...  +-+.+||......  ...      ......|.++...+ ++.+.
T Consensus       483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~-~g~lW  557 (795)
T 4a2l_A          483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEAS-NGIIW  557 (795)
T ss_dssp             EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECT-TSCEE
T ss_pred             EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECC-CCCEE
Confidence            432211      1235789999998887665543  5688888755422  111      01234577887765 45544


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEec---C-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEG---H-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      + |+.+ -+..||..+.+. ..+..   - ...+.++..  ..++.+.+ ++. +-|..||.++++.
T Consensus       558 i-gT~~-Gl~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~--d~~g~lWi-~t~-~Gl~~~~~~~~~~  617 (795)
T 4a2l_A          558 V-GTRE-GFYCFNEKDKQI-KRYNTTNGLPNNVVYGILE--DSFGRLWL-STN-RGISCFNPETEKF  617 (795)
T ss_dssp             E-EESS-CEEEEETTTTEE-EEECGGGTCSCSCEEEEEE--CTTSCEEE-EET-TEEEEEETTTTEE
T ss_pred             E-EeCC-CceeECCCCCcE-EEeCCCCCCchhheEEEEE--CCCCCEEE-EcC-CceEEEcCCCCcE
Confidence            4 4444 588888765532 22221   1 234665554  34454444 444 5578888877654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.98  E-value=0.0078  Score=53.28  Aligned_cols=182  Identities=9%  Similarity=-0.046  Sum_probs=109.7

Q ss_pred             ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCc----ceEEEeccCCCceeEEEEcC
Q psy4653          35 YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN-WIVTGSDDMQVCVFNYNTL----ERFHSFEAHSDYVRCVAVHP  109 (229)
Q Consensus        35 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~~~i~~v~~~~  109 (229)
                      ....|+..++...+...... ....+..++|.+.++ +.++-...+.|..++++..    .....+.........|++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            34567778887655433333 334678899998655 4455555678888888642    22222332334567899997


Q ss_pred             CCC-EEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCceEEEecCCCc
Q psy4653         110 TQP-FLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPNFTLEGHEKG  187 (229)
Q Consensus       110 ~~~-~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~h~~~  187 (229)
                      .+. ++++-...+.|.+.++.... ...+..........++++|..+.++++-... +.|...++........+...-..
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~  559 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  559 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence            765 55666777899999987542 2233333334467889988666677765443 78888888654433333333345


Q ss_pred             eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       188 v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .+.|++.+. .+.+.++-...+.|...++...
T Consensus       560 P~GLavD~~-~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          560 PNGITLDLL-SGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             EEEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEecC-CCeEEEEeCCCCcEEEEecCCC
Confidence            667777533 3344455556677888887644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.96  E-value=0.0037  Score=48.98  Aligned_cols=185  Identities=10%  Similarity=0.004  Sum_probs=111.6

Q ss_pred             eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC----cceEEEeccCCCcee
Q psy4653          29 WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNT----LERFHSFEAHSDYVR  103 (229)
Q Consensus        29 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~----~~~~~~~~~h~~~i~  103 (229)
                      +|+.+. ...|+..|+.+.+....... ......+.|.+.++.| .+-...+.|..++++.    ......+...-....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344443 35688899988765544432 3457889999876554 4555567899998875    222222222223457


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCceEEE
Q psy4653         104 CVAVHPTQ-PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPNFTL  181 (229)
Q Consensus       104 ~v~~~~~~-~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~  181 (229)
                      .+++.+.+ .++++-...+.|.+.+++.. ....+..........++++|..+.++++.... +.|...++.... ...+
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~  158 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL  158 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence            89998654 45566677889999998653 22222322223457788888666666665443 688888875433 2333


Q ss_pred             -ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         182 -EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       182 -~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                       ...-...+.+++.+. ++.+..+-+..+.|..+|+..
T Consensus       159 ~~~~~~~P~gla~d~~-~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          159 VTENIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             ECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             EECCCCCceEEEEecc-CCEEEEEECCCCeEEEEecCC
Confidence             222334667887533 334556666778899999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.96  E-value=0.0022  Score=56.46  Aligned_cols=150  Identities=11%  Similarity=0.084  Sum_probs=88.0

Q ss_pred             EEEEEccCCCeEEEEEec-----CeEEEEEcCCCCe--EEEEEec-CcCeEEEEEcCCCCEEEEEeCC---CeEEEEECC
Q psy4653          19 KCCDLHPTEPWMLASLYN-----GHVHVWNHETNQN--VKSFEVC-DLPVRAAKFVPRKNWIVTGSDD---MQVCVFNYN   87 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~d-----g~v~~wd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d---~~i~iwd~~   87 (229)
                      ..+.|+||++.|+....|     ..|.++++.+++.  ...+... ......+.|+|+|++|+..+.+   ..|.++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            467899999988888765     3688899888653  2333322 2346778999999987765533   368888887


Q ss_pred             Ccc-eE--EEe-ccCCCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeee-eeecce-eeEEEEEEcCCCCCE
Q psy4653          88 TLE-RF--HSF-EAHSDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQ-VFEGHT-HYVMQIVINPKDNNT  157 (229)
Q Consensus        88 ~~~-~~--~~~-~~h~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~  157 (229)
                      ++. ..  ..+ ....+....+.|+..+.+++.+..+    ..|..+|+........ ++.... ..+..+.+.  .+.+
T Consensus       304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~l  381 (751)
T 2xe4_A          304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYL  381 (751)
T ss_dssp             SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEE
T ss_pred             CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEE
Confidence            652 22  333 2333445566665555555555544    3566777653211122 222211 134445553  4456


Q ss_pred             EEEEECCCcEEEE
Q psy4653         158 FASASLDRTVKVW  170 (229)
Q Consensus       158 l~s~~~d~~i~~w  170 (229)
                      +++...++..++|
T Consensus       382 v~~~~~~g~~~l~  394 (751)
T 2xe4_A          382 VVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEEeCCEEEEE
Confidence            6777778865544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.94  E-value=0.0045  Score=50.88  Aligned_cols=199  Identities=10%  Similarity=0.045  Sum_probs=113.6

Q ss_pred             ceEEEEEccC--CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---Ce-EEEEECCCcc
Q psy4653          17 RVKCCDLHPT--EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---MQ-VCVFNYNTLE   90 (229)
Q Consensus        17 ~v~~~~~~p~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---~~-i~iwd~~~~~   90 (229)
                      .-..++++|+  ...|+.+...+.|+.+|..+++...... .......+.++++++++++....   .. +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3568899995  4455555444899999998876654433 33457899999999955554321   22 3333322111


Q ss_pred             e-EEEeccCCCceeEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeee-cceeeEEEEEEcCCCCC-EEEEEECCCc
Q psy4653          91 R-FHSFEAHSDYVRCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFE-GHTHYVMQIVINPKDNN-TFASASLDRT  166 (229)
Q Consensus        91 ~-~~~~~~h~~~i~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~l~s~~~d~~  166 (229)
                      . ...+. .-..-..++++| ++.++++-..++.|+.+|...+......+. +.......++++| ++. ++++-...+.
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~  296 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHC  296 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCE
Confidence            1 01111 123345788999 677766766778899999864422122221 1112234688998 455 6667677889


Q ss_pred             EEEEeCCC--CCc--eEEEecC---------------CCceEEEEEEe-------CCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         167 VKVWQLGS--ASP--NFTLEGH---------------EKGVNCVDYYH-------GGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       167 i~~wd~~~--~~~--~~~~~~h---------------~~~v~~~~~~~-------~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      |+.+++..  +..  ...+.+.               -.....+++..       ..++.+.++-...+.|+.++. .+
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            99988653  211  1122211               11234466521       234456666666778888874 44

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.85  E-value=0.0058  Score=47.47  Aligned_cols=174  Identities=9%  Similarity=0.058  Sum_probs=99.7

Q ss_pred             CceEEEEEccCCCeEEEEEec--CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-e
Q psy4653          16 DRVKCCDLHPTEPWMLASLYN--GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-R   91 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~d--g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~   91 (229)
                      .....+++.|++.++++....  ..|..+|..+++......... .....+...+.++.+++-..++.|..+|...++ .
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            457889999999866655433  257778888877644332211 123444555555555555568888888876542 1


Q ss_pred             EEEec---------cCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEEE
Q psy4653          92 FHSFE---------AHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        92 ~~~~~---------~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      +....         ..-..-+.+  ++++..+ ++-...+.|..+++......  ...+.. ......+++.+ ++.+++
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~v  227 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYG  227 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEE
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEE
Confidence            21100         111223455  7777755 45566789999998641111  112211 11234567776 677887


Q ss_pred             EEECCCcEEEEeCCCCCceE--EEecCCCceEEEEEE
Q psy4653         160 SASLDRTVKVWQLGSASPNF--TLEGHEKGVNCVDYY  194 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~  194 (229)
                      +....+.|.++|.. ++...  .+........+++|.
T Consensus       228 a~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          228 ATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             ECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             EeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence            77778899999875 43321  222222457788874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.84  E-value=0.0081  Score=48.79  Aligned_cols=188  Identities=10%  Similarity=-0.023  Sum_probs=115.6

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCc----ceEEEeccCCCce
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFNYNTL----ERFHSFEAHSDYV  102 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~----~~~~~~~~h~~~i  102 (229)
                      ++|+.+ ....|+..++.+........ ....+..++|.+.++.|. +-...+.|..++++..    .....+.......
T Consensus        84 ~~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           84 AYLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             CEEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ceeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            344433 45789999998765544433 334688999998666554 4445678888888652    2222223233456


Q ss_pred             eEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-CCcEEEEeCCCCCceEE
Q psy4653         103 RCVAVHP-TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL-DRTVKVWQLGSASPNFT  180 (229)
Q Consensus       103 ~~v~~~~-~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~  180 (229)
                      ..+++.+ .+.++++-...+.|.+.+++... ...++.........++++|..+.++++-.. .+.|...++........
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~  240 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  240 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence            7899997 45556666778899999987542 233333223346788888866666666533 47888888865443333


Q ss_pred             EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       181 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +...-...+.+++.+. ++.+..+-+..+.|..+|+...
T Consensus       241 ~~~~l~~P~glavd~~-~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          241 VTENIQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             ECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             EECCCCceEEEEEEeC-CCEEEEEECCCCEEEEEeCCCC
Confidence            3333345677887543 3345555566788999988654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.83  E-value=0.0067  Score=47.75  Aligned_cols=195  Identities=12%  Similarity=0.100  Sum_probs=118.9

Q ss_pred             EEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEE-EEe----c--CcCeEEEEE---cCCCCEEEEEe-----------
Q psy4653          19 KCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKS-FEV----C--DLPVRAAKF---VPRKNWIVTGS-----------   76 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~sg~-----------   76 (229)
                      .+.+|++....+..+. ..++|..||...+..... +..    .  ......+.+   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4689998666666665 799999999986544333 211    1  113588999   58877777644           


Q ss_pred             --CCCeEEEEECC---CcceEEEec--cCC-----------CceeEEEEcCCCCEEEEEeCC-CcEEEEecCCceeeeee
Q psy4653          77 --DDMQVCVFNYN---TLERFHSFE--AHS-----------DYVRCVAVHPTQPFLLTSSDD-MLIKLWNWEKAWACQQV  137 (229)
Q Consensus        77 --~d~~i~iwd~~---~~~~~~~~~--~h~-----------~~i~~v~~~~~~~~~~s~~~d-~~v~lwd~~~~~~~~~~  137 (229)
                        .+..+..+|+.   +++.+....  ...           .....++..++|+..++++.- +.|...+.+.. . ...
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~-~~~  173 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T-VST  173 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C-EEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E-Eee
Confidence              25678899998   777654432  111           247889999999999988877 77777776533 1 111


Q ss_pred             ee------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCce-EEEe--cC---CCceEEE-EEEeCCCcCE-EE
Q psy4653         138 FE------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN-FTLE--GH---EKGVNCV-DYYHGGDKPY-LI  203 (229)
Q Consensus       138 ~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~--~h---~~~v~~~-~~~~~~~~~~-l~  203 (229)
                      +.      ......+.++++| ++.+|+....++.+..+|+...... ..+.  +.   -.....+ ....  +++. |+
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~--~G~vllV  250 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV--GNESVLV  250 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE--TTEEEEE
T ss_pred             eeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc--CCEEEEE
Confidence            11      1111245788888 5666666655999999998743220 1111  22   1223332 2211  3344 66


Q ss_pred             EeeCCCeEEEEECCC
Q psy4653         204 SGADDRLVKIWDYQN  218 (229)
Q Consensus       204 s~s~d~~i~iwd~~~  218 (229)
                      +....+.+.+.+-..
T Consensus       251 ~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          251 GARAPYAISFRSWDN  265 (334)
T ss_dssp             EEETTEEEEEECSST
T ss_pred             EcCCCCEEEEECCCC
Confidence            666677777766543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.80  E-value=0.013  Score=50.43  Aligned_cols=202  Identities=11%  Similarity=0.088  Sum_probs=125.9

Q ss_pred             CceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEe------cCcCeEEEEEcCCCCE-EEEEeCCCeEEEEECC
Q psy4653          16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEV------CDLPVRAAKFVPRKNW-IVTGSDDMQVCVFNYN   87 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~   87 (229)
                      ..+.+++|++....|+-+ ...+.|+.++.........+..      .......+++.+.++. ..+-+..+.|.+.+.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            457899999976666655 4578899998876543333322      1235788999987664 4566667789998886


Q ss_pred             CcceEEEe-ccCCCceeEEEEcC-CCCEEEEEeCCC--cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEEC
Q psy4653          88 TLERFHSF-EAHSDYVRCVAVHP-TQPFLLTSSDDM--LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        88 ~~~~~~~~-~~h~~~i~~v~~~~-~~~~~~s~~~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                      . +....+ ......-+.|+++| .+.++++-....  .|...+++.. ....+....-.....+++++..+.++++-+.
T Consensus       420 G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~-~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~  497 (628)
T 4a0p_A          420 G-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT-EREVLFFSGLSKPIALALDSRLGKLFWADSD  497 (628)
T ss_dssp             S-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             C-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC-CcEEEEeccCCCccEEEEeCCCCEEEEEeCC
Confidence            4 333333 23345678999999 555555543333  5666666533 2222222223345788888765667777677


Q ss_pred             CCcEEEEeCCCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         164 DRTVKVWQLGSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      .+.|...++.... ...+. ........++.. .  +.+..+-...+.|...|..+++...
T Consensus       498 ~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~-~--~~ly~tD~~~~~i~~~~k~~G~~~~  554 (628)
T 4a0p_A          498 LRRIESSDLSGAN-RIVLEDSNILQPVGLTVF-E--NWLYWIDKQQQMIEKIDMTGREGRT  554 (628)
T ss_dssp             TTEEEEEETTSCS-CEEEECSSCSCEEEEEEE-T--TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred             CCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEE-C--CEEEEEECCCCeEEEEECcCCCCcE
Confidence            7899999986543 33343 333345666663 2  3466666677888888887665433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=0.01  Score=52.32  Aligned_cols=195  Identities=9%  Similarity=0.045  Sum_probs=116.0

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE---EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF---EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER   91 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~   91 (229)
                      ...|.++...+++. |..|+.++-|..+|..+++.....   ......|.++...+++++.+ |+.++-+..+|.++++.
T Consensus       362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred             CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence            35799999888776 566776777888998764332211   11234588888887776554 66666788888876543


Q ss_pred             EEEec---cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecc-----eeeEEEEEEcCCCCCEEEEEEC
Q psy4653          92 FHSFE---AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH-----THYVMQIVINPKDNNTFASASL  163 (229)
Q Consensus        92 ~~~~~---~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~  163 (229)
                       ..+.   .....|.++...+++.+.+ |+. +-|.++|..... ........     ...|..+...+ ++.+ ..|..
T Consensus       440 -~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~-~g~l-Wigt~  513 (781)
T 3v9f_A          440 -QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQDS-EGRF-WIGTF  513 (781)
T ss_dssp             -EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEECT-TCCE-EEEES
T ss_pred             -EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEcC-CCCE-EEEEc
Confidence             2332   1346789998888776544 444 568888876532 11111111     34577887765 4444 44565


Q ss_pred             CCcEEEEeCCCCCceEEEec-C---CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         164 DRTVKVWQLGSASPNFTLEG-H---EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~-h---~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      ++-+..+|..+.+. ..+.. .   ...|.++..  ..++. |..|+.+|-|..||.++++.
T Consensus       514 ~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~--d~~g~-lWi~T~~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          514 GGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYR--SSKGQ-MWLATGEGLVCFPSARNFDY  571 (781)
T ss_dssp             SSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEE--CTTSC-EEEEETTEEEEESCTTTCCC
T ss_pred             CCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEE--CCCCC-EEEEECCCceEEECCCCCcE
Confidence            44577888765432 22221 1   234666654  33444 44455566558888876653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.75  E-value=0.017  Score=49.77  Aligned_cols=199  Identities=9%  Similarity=-0.013  Sum_probs=117.5

Q ss_pred             ceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCcceEEE
Q psy4653          17 RVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK-NWIVTGSDDMQVCVFNYNTLERFHS   94 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~i~iwd~~~~~~~~~   94 (229)
                      .+.+++|++.+..|+.+ ...+.|..++.............-.....+++.+.+ ++..+-+..+.|.+.+++.......
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l  429 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKIL  429 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEE
Confidence            56789999966555554 467899999988654433333222356678888744 4555555677899988875432222


Q ss_pred             eccCCCceeEEEEcCC-CCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          95 FEAHSDYVRCVAVHPT-QPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~-~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      +...-..-..|+++|. +.++++-. ....|...+++... ...+....-.....+++++.++.++++-+..++|...++
T Consensus       430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~-~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD-RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc-cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            2222345679999996 54555542 23677777765432 122222223446778888766667777677788999998


Q ss_pred             CCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         173 GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       173 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      ........+...-.....++..  ++ .+..|-...+.|..-|..++
T Consensus       509 dG~~~~~~~~~~l~~P~glav~--~~-~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          509 DGTGRRVLVEDKIPHIFGFTLL--GD-YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             SSCCCEEEEECCCCSSCCEEEE--TT-EEEEECTTSSCEEEEESSSC
T ss_pred             CCCceEEEeccCCCCcEEEEEE--CC-EEEEeecCCCeEEEEEcCCC
Confidence            6544322222222222344442  22 34555556666777776665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.70  E-value=0.011  Score=46.42  Aligned_cols=175  Identities=8%  Similarity=-0.034  Sum_probs=103.4

Q ss_pred             ceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCcceEE
Q psy4653          17 RVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD--DMQVCVFNYNTLERFH   93 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~~   93 (229)
                      ....+++.+.+..|+ +-...+.|.+.++...............-..+.+.|.+..|.....  .+.|...+.+......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            345678887554444 4456788999998764433222222335678899987666555543  4677777776433222


Q ss_pred             EeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          94 SFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      .....-..-+.|++++++..| ++-+..+.|..+|++.. ....+..+.......+++.  .+.++.+....+.|..++.
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEEC
Confidence            222222334789999866655 55566788999998643 2222222222334556664  3467777777889999998


Q ss_pred             CCCCceEEEecCCCceEEEEEE
Q psy4653         173 GSASPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       173 ~~~~~~~~~~~h~~~v~~~~~~  194 (229)
                      .+++....+.........++.+
T Consensus       237 ~~G~~~~~i~~~~~~P~~i~v~  258 (318)
T 3sov_A          237 YTGEGLREIHSDIFSPMDIHAF  258 (318)
T ss_dssp             TTCCSCEEEECCCSSCCCEEEE
T ss_pred             CCCCceEEEeCCCCCCcEEEEe
Confidence            7776665554332233344443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.0045  Score=50.83  Aligned_cols=154  Identities=8%  Similarity=0.034  Sum_probs=91.3

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeC-CC----cEEEEecCCcee
Q psy4653          60 VRAAKFVP-RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSD-DM----LIKLWNWEKAWA  133 (229)
Q Consensus        60 v~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~----~v~lwd~~~~~~  133 (229)
                      -..++++| ++..|......+.|..+|++.++.. .+......-..++|++++..++.+.. ++    .+.+.+......
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            46788898 3555555554478888998875543 33234455789999999995555543 22    233344322211


Q ss_pred             eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcC-EEEEeeCCCeE
Q psy4653         134 CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKP-YLISGADDRLV  211 (229)
Q Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~-~l~s~s~d~~i  211 (229)
                      ....+.. ......++++|.++.++++-..++.|..++............ .......+++.  ++++ ++++-...+.|
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~--pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH--PSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC--TTSSEEEEEETTTTEE
T ss_pred             eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc--CCCCEEEEEECCCCEE
Confidence            1112211 122456778886677787777888999999876543111111 12235667874  4555 55566678889


Q ss_pred             EEEECC
Q psy4653         212 KIWDYQ  217 (229)
Q Consensus       212 ~iwd~~  217 (229)
                      ..++..
T Consensus       295 ~~~~~d  300 (430)
T 3tc9_A          295 LRSDYD  300 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            998865

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.61  E-value=0.02  Score=46.94  Aligned_cols=155  Identities=9%  Similarity=0.023  Sum_probs=89.2

Q ss_pred             CCceEEEEEccCCCeEEEEEec----C-eEEEEEcCCCCe-EEEEEecCcCeEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYN----G-HVHVWNHETNQN-VKSFEVCDLPVRAAKFVP-RKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~d----g-~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~sg~~d~~i~iwd~~   87 (229)
                      ......++++|++. |+.+...    . .+...+...+.. ...+.. -..-..+.+.| ++++.++-..++.|..+|.+
T Consensus       181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            34578999999999 5554432    1 233343332221 112222 22346678888 66666666667789999987


Q ss_pred             CcceEEEe-cc-CCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCce-ee--eeeeecc---------------eeeEE
Q psy4653          88 TLERFHSF-EA-HSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAW-AC--QQVFEGH---------------THYVM  146 (229)
Q Consensus        88 ~~~~~~~~-~~-h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~-~~--~~~~~~~---------------~~~v~  146 (229)
                      ++.....+ .. ....-..++|+|++.. +++-...+.|+.++..... ..  ...+.+.               -....
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  338 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN  338 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence            66542222 11 1122346999999984 5555667899998864211 10  1112111               11245


Q ss_pred             EEEE---------cCCCCCEEEEEECCCcEEEEeC
Q psy4653         147 QIVI---------NPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus       147 ~~~~---------~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      .+++         .+ ++.++++-...++|+.++.
T Consensus       339 giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          339 QGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT
T ss_pred             cEEEEccccccccCC-CCcEEEEECCCCEEEEECC
Confidence            5777         43 5667777777889999885

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.035  Score=48.94  Aligned_cols=198  Identities=12%  Similarity=0.006  Sum_probs=119.3

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE---------ecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE---------VCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ....|.++...+++. |..|+.++-|..++..++.......         .....|.++...+++++. .|+.++-|..+
T Consensus       311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~  388 (781)
T 3v9f_A          311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVF  388 (781)
T ss_dssp             SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEE
T ss_pred             CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEE
Confidence            345799999998886 6777778888889988755422211         012458899888877654 45555558888


Q ss_pred             ECCCcceEEEe---ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee--cceeeEEEEEEcCCCCCEEE
Q psy4653          85 NYNTLERFHSF---EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE--GHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        85 d~~~~~~~~~~---~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~  159 (229)
                      |..++......   ......|.++...+++.+.+ |+.++-+..+|..... ......  .....|.++...+ ++ .+.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~-~g-~lw  464 (781)
T 3v9f_A          389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDK-NK-KIW  464 (781)
T ss_dssp             ETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECT-TS-EEE
T ss_pred             ECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECC-CC-CEE
Confidence            87654322111   12345788998888776554 6666678888875442 222111  1234577777765 34 455


Q ss_pred             EEECCCcEEEEeCCCCCceEEEecC-----CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         160 SASLDRTVKVWQLGSASPNFTLEGH-----EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       160 s~~~d~~i~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      .|.. +-+..+|..+++........     ...+.++..  ..++. |..|+.++-+..||.++++.
T Consensus       465 igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          465 IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ--DSEGR-FWIGTFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE--CTTCC-EEEEESSSCEEEECTTCCEE
T ss_pred             EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE--cCCCC-EEEEEcCCCEEEEeCCCCeE
Confidence            5565 56888998765433222211     235666655  33444 55566544477788876654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.026  Score=47.13  Aligned_cols=155  Identities=10%  Similarity=0.142  Sum_probs=95.9

Q ss_pred             ceEEEEEccC-CCeEEEEEe-cCeEEEEEcCCCCeEEEEEecC---cCeEEEEE-------cCCCCEEEEEeCCC-----
Q psy4653          17 RVKCCDLHPT-EPWMLASLY-NGHVHVWNHETNQNVKSFEVCD---LPVRAAKF-------VPRKNWIVTGSDDM-----   79 (229)
Q Consensus        17 ~v~~~~~~p~-~~~l~~~~~-dg~v~~wd~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~l~sg~~d~-----   79 (229)
                      .-..|+|+|. ...|+++.. .+.|++.|..++..........   .....+.|       +++++.|.++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4578999994 666666654 4679999999877755544322   24788999       99999666665543     


Q ss_pred             --eEEEEECCC-cceE-----EEeccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecC-------Ccee----------
Q psy4653          80 --QVCVFNYNT-LERF-----HSFEAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWE-------KAWA----------  133 (229)
Q Consensus        80 --~i~iwd~~~-~~~~-----~~~~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~-------~~~~----------  133 (229)
                        .|.+++... ++..     ..+... .....++++|+ +.++++-..++.|..+|++       ....          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              255665333 1111     112111 23357888995 5556677778889999986       2321          


Q ss_pred             -eeeeee-cceeeEEEEEEcCCCCC-EEEEEECCCcEEEEeCC
Q psy4653         134 -CQQVFE-GHTHYVMQIVINPKDNN-TFASASLDRTVKVWQLG  173 (229)
Q Consensus       134 -~~~~~~-~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~~wd~~  173 (229)
                       ...++. +.......++++| ++. ++++-...+.|+.++..
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecC
Confidence             112221 1123357899998 566 56666778899997654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.51  E-value=0.022  Score=44.78  Aligned_cols=190  Identities=5%  Similarity=0.016  Sum_probs=103.5

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCcceE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY--NTLERF   92 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~--~~~~~~   92 (229)
                      ..+..+.+.+++..++++ .+|.|.. ....++.=... ......+..+.+.+++.+++.+...+..+-+|-  .+-+.+
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~  199 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH  199 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC
Confidence            357778887777655544 4554422 12223322221 222346888999999888877755444444443  222232


Q ss_pred             EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec---ceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG---HTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      .  ......+..+.+.+++..+ .++.+|.+++.+.+.+..-......   ....+..+.+.+ ++.+++. +.++.+ +
T Consensus       200 ~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-g~~g~i-~  273 (327)
T 2xbg_A          200 N--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLA-GGAGAL-L  273 (327)
T ss_dssp             E--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEE-ESTTCE-E
T ss_pred             C--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEE-eCCCeE-E
Confidence            1  2344678899999988765 4456788877643222111111111   123467788876 4555554 457766 3


Q ss_pred             EeCCCCCceEEEe---cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         170 WQLGSASPNFTLE---GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       170 wd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      +....++.-..+.   .....+.++.|..  +. .++.++.+|.|.-++-
T Consensus       274 ~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          274 CSQDGGQTWQQDVDVKKVPSNFYKILFFS--PD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EESSTTSSCEECGGGTTSSSCCCEEEEEE--TT-EEEEECSTTEEEEECC
T ss_pred             EeCCCCcccEEcCccCCCCCCeEEEEEEC--CC-ceEEEcCCceEEEEcC
Confidence            4444443322232   1234577788753  22 4667778898776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.30  E-value=0.00077  Score=58.91  Aligned_cols=180  Identities=10%  Similarity=-0.036  Sum_probs=102.3

Q ss_pred             cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC----cceEEEeccCCCceeEEEEcCC
Q psy4653          36 NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS-DDMQVCVFNYNT----LERFHSFEAHSDYVRCVAVHPT  110 (229)
Q Consensus        36 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~----~~~~~~~~~h~~~i~~v~~~~~  110 (229)
                      .+.|+..++.+.+........ .....+.|.+.++.|.... ..+.|..++++.    ......+.........|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            357788888776554433322 3467889998776665554 456788888875    2221222111223457888854


Q ss_pred             -CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCceEEEecCCCce
Q psy4653         111 -QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPNFTLEGHEKGV  188 (229)
Q Consensus       111 -~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~h~~~v  188 (229)
                       +.++++-...+.|.+.++.... ...++.........++++|..+.++++.... +.|...++........+...-...
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence             4455565667899999986542 2222222222345677887666666665433 678887775433221111212234


Q ss_pred             EEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         189 NCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       189 ~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      +.+++.+. .+.+.++-+..+.|..+|+..
T Consensus       543 nGlavd~~-~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          543 NGITLDLL-SGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCEEECTT-TCCEEEEETTTTEEEEECSSS
T ss_pred             cEEEEecc-CCEEEEEecCCCeEEEEccCC
Confidence            56777432 344666666778899999864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.28  E-value=0.038  Score=43.35  Aligned_cols=153  Identities=8%  Similarity=0.058  Sum_probs=84.0

Q ss_pred             CCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE-EecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE
Q psy4653          14 RSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF-EVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF   92 (229)
Q Consensus        14 ~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~   92 (229)
                      +...+..+.+.|++.+++++...+-.+-+|-. ++.-..+ ......+..+.+.++++.++. +.+|.+...+.+.++.-
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCee
Confidence            44568899999988766655433333334421 2211111 123346788889988876654 46787776643323332


Q ss_pred             EEecc----CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          93 HSFEA----HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        93 ~~~~~----h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ..+..    +...+.++.+.+++..++++. ++.+ ++..+.+..-....  ......+..+.+.+  +..++.++.+|.
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~~~~~~G~~G~  314 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS--PDQGFILGQKGI  314 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE--TTEEEEECSTTE
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC--CCceEEEcCCce
Confidence            22221    223588999998777666654 6666 34433332111111  11223456666653  345666778888


Q ss_pred             EEEEeC
Q psy4653         167 VKVWQL  172 (229)
Q Consensus       167 i~~wd~  172 (229)
                      |.-++-
T Consensus       315 i~~~~~  320 (327)
T 2xbg_A          315 LLRYVT  320 (327)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.23  E-value=0.069  Score=44.56  Aligned_cols=206  Identities=11%  Similarity=0.174  Sum_probs=116.2

Q ss_pred             CceEEEEE-------ccCCCeEEEEEecC-------eEEEEEcCC-CCeE-----EEEEecCcCeEEEEEcCC-CCEEEE
Q psy4653          16 DRVKCCDL-------HPTEPWMLASLYNG-------HVHVWNHET-NQNV-----KSFEVCDLPVRAAKFVPR-KNWIVT   74 (229)
Q Consensus        16 ~~v~~~~~-------~p~~~~l~~~~~dg-------~v~~wd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~s   74 (229)
                      .+...++|       ++++..|+++...+       .|.+.+... +...     ..+.... ....+.++|+ +.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEE
Confidence            35788999       99999777776543       366676443 2221     2333323 3457788994 556666


Q ss_pred             EeCCCeEEEEECC-------Ccce-----------EEE-ecc-CCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCce-
Q psy4653          75 GSDDMQVCVFNYN-------TLER-----------FHS-FEA-HSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAW-  132 (229)
Q Consensus        75 g~~d~~i~iwd~~-------~~~~-----------~~~-~~~-h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~-  132 (229)
                      -..++.|..+|++       ++..           ... +.. ....-..++|+|++.. +++-+..+.|+.++..... 
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            6778889999987       4432           111 111 1233468999999995 5555667889987653321 


Q ss_pred             ee--eeeeecc---e------------eeEE-EEEEc-C-----CCCCEEEEEECCCcEEEEeCCCCCceEEEecC----
Q psy4653         133 AC--QQVFEGH---T------------HYVM-QIVIN-P-----KDNNTFASASLDRTVKVWQLGSASPNFTLEGH----  184 (229)
Q Consensus       133 ~~--~~~~~~~---~------------~~v~-~~~~~-~-----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h----  184 (229)
                      ..  ..++.+.   .            .... .+... +     .++.++++-...++|+.++. .+ .+.++-+.    
T Consensus       345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~  422 (496)
T 3kya_A          345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGAST  422 (496)
T ss_dssp             EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTH
T ss_pred             eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccc
Confidence            11  1222221   0            1122 34443 1     24667777778889999984 33 23333221    


Q ss_pred             ----------C----------CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         185 ----------E----------KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       185 ----------~----------~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                                .          .....+++.+. ++.+.++=+.+..||.++++...++...
T Consensus       423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~-~g~lyVaD~~N~rIrki~~~~~~~~~~~  482 (496)
T 3kya_A          423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDV-KEMFYVHDQVGHTIRTISMEQEENVAGD  482 (496)
T ss_dssp             HHHHSCSCCCCCEETTTTCCCSSEEEEEEETT-TTEEEEEETTTTEEEEEEECCCC-----
T ss_pred             cccCccccccCCCCchhhhhcCCCcEEEEECC-CCEEEEEeCCCCEEEEEECCCCcccccC
Confidence                      0          12345666421 2446666667788888888776665443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.15  E-value=0.049  Score=41.85  Aligned_cols=184  Identities=9%  Similarity=0.059  Sum_probs=90.6

Q ss_pred             CCCeEEEEEec-----CeEEEEEcCCCC---eEEEEEecC--cCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCcc
Q psy4653          26 TEPWMLASLYN-----GHVHVWNHETNQ---NVKSFEVCD--LPVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNTLE   90 (229)
Q Consensus        26 ~~~~l~~~~~d-----g~v~~wd~~~~~---~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~   90 (229)
                      ++..++.|+.+     ..+.++|..+.+   -...-....  ....++.+  ++++++.|+.++     .+.++|+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56667777654     468899998876   322211111  11222222  566777776443     57888987765


Q ss_pred             eEE--EeccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          91 RFH--SFEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        91 ~~~--~~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ...  .+......-.++.+  ++.+++.|+.+     ..+.+||+... +.....+......-..+.+   ++.+++.|+
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG  214 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGG  214 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeC
Confidence            322  22211111122222  55666766654     45788887653 2211111111111112222   456777777


Q ss_pred             CC-----CcEEEEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         163 LD-----RTVKVWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       163 ~d-----~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                      .+     ..+.+||..+.+= ..+..-  ...-.+... .  ++.+++.|+.+     ..|.+||.++.+
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~-~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCYVGATV-L--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE-E--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCcE-EECCCCCCcccceeEEE-E--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            64     4688888875431 112111  111112222 1  33466666654     468899988764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.13  E-value=0.051  Score=41.21  Aligned_cols=166  Identities=8%  Similarity=0.094  Sum_probs=102.0

Q ss_pred             CcCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCcceEEEeccC-CCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy4653          57 DLPVRAAKFVPRKNW-IVTGSDDMQVCVFNYNTLERFHSFEAH-SDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC  134 (229)
Q Consensus        57 ~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~  134 (229)
                      ...+..++|.|+++. .++...++.|...|.+ ++.++.+.-. ......|++.+++.++++.-.++.+.++++......
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            357999999998764 4557778888889987 7777665321 235688999998887777767788999987544321


Q ss_pred             --eeeee------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCC---CCCceEEEe-------cCCCceEEEEEEeC
Q psy4653         135 --QQVFE------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLG---SASPNFTLE-------GHEKGVNCVDYYHG  196 (229)
Q Consensus       135 --~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~-------~h~~~v~~~~~~~~  196 (229)
                        .....      ........++++|.. ..|..+.......+|.+.   ....+..+.       .+...+..++|.+.
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence              11111      112335789999854 444445544444555443   111122221       12234678888653


Q ss_pred             CCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         197 GDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       197 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                       .+.+++.....+.+..+|.+ ++.+..+.
T Consensus       184 -tg~lliLS~~s~~L~~~d~~-g~~~~~~~  211 (255)
T 3qqz_A          184 -KNTLLVLSHESRALQEVTLV-GEVIGEMS  211 (255)
T ss_dssp             -TTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred             -CCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence             44566666677888899976 44655543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.03  E-value=0.085  Score=41.89  Aligned_cols=151  Identities=10%  Similarity=0.123  Sum_probs=89.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCC----C---EEEEEeC---CCcEEEEecCCceeeeeee
Q psy4653          69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQ----P---FLLTSSD---DMLIKLWNWEKAWACQQVF  138 (229)
Q Consensus        69 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~----~---~~~s~~~---d~~v~lwd~~~~~~~~~~~  138 (229)
                      ..+++.....+-+.++|+ .++.++.+..  +.++-+++.|.-    +   +++++..   +++|.+|++..........
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            345665566778999999 7788877754  567777777732    1   3344444   5799999774211112222


Q ss_pred             e------cce-eeEEEEEE--cCCCCC-EEEEEECCCcEEEEeCC---CC----CceEEEecCCCceEEEEEEeCCCcCE
Q psy4653         139 E------GHT-HYVMQIVI--NPKDNN-TFASASLDRTVKVWQLG---SA----SPNFTLEGHEKGVNCVDYYHGGDKPY  201 (229)
Q Consensus       139 ~------~~~-~~v~~~~~--~~~~~~-~l~s~~~d~~i~~wd~~---~~----~~~~~~~~h~~~v~~~~~~~~~~~~~  201 (229)
                      .      +.. ..++.+++  +|.++. +++....++.+..|++.   .+    +.++++.--. .+..+.+.  +....
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~EgcvvD--d~~g~  193 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAAD--DEYGR  193 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEEE--TTTTE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEEEc--CCCCe
Confidence            1      011 33455555  665554 56667788999999883   22    3345554433 45555553  34457


Q ss_pred             EEEeeCCCeEEEEECC-----CCeEEEee
Q psy4653         202 LISGADDRLVKIWDYQ-----NKTCVQTL  225 (229)
Q Consensus       202 l~s~s~d~~i~iwd~~-----~~~~~~~~  225 (229)
                      |..+-+|.-|--++.+     +++.+..+
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~  222 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRA  222 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEe
Confidence            8888888766666654     34555544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.00  E-value=0.086  Score=41.49  Aligned_cols=158  Identities=13%  Similarity=0.187  Sum_probs=97.5

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEE-Eecc----CCC--ceeEEEE---cCCCCEEEEEe---------
Q psy4653          59 PVRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLERFH-SFEA----HSD--YVRCVAV---HPTQPFLLTSS---------  118 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~~~-~~~~----h~~--~i~~v~~---~~~~~~~~s~~---------  118 (229)
                      .--+..|.+....|..++ ..+.|..||...+.... .+..    ...  .+..|.|   .|++.++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            345678887666555555 68999999987554322 2322    111  3578999   68877776544         


Q ss_pred             ----CCCcEEEEecC---Cceeeeee-eec-----------ceeeEEEEEEcCCCCCEEEEEECC-CcEEEEeCCCCCce
Q psy4653         119 ----DDMLIKLWNWE---KAWACQQV-FEG-----------HTHYVMQIVINPKDNNTFASASLD-RTVKVWQLGSASPN  178 (229)
Q Consensus       119 ----~d~~v~lwd~~---~~~~~~~~-~~~-----------~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~  178 (229)
                          .+..|..+|+.   ++.....+ +..           -......++..+ +++..++++.. +.|...+.......
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence                26789999987   44332221 111           112467888887 68899998888 88777776543211


Q ss_pred             -EEEec----CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         179 -FTLEG----HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       179 -~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                       +-+..    .....+.+++.+  ++..|+....+|.+.-+|+++.
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred             eeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence             11111    122356788854  4445555555999999998754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.99  E-value=0.071  Score=41.09  Aligned_cols=185  Identities=5%  Similarity=0.020  Sum_probs=89.7

Q ss_pred             CCCeEEEEEec----CeEEEEEcCCCCeEEEEEecC--cCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCcceEE
Q psy4653          26 TEPWMLASLYN----GHVHVWNHETNQNVKSFEVCD--LPVRAAKFVPRKNWIVTGSDD------MQVCVFNYNTLERFH   93 (229)
Q Consensus        26 ~~~~l~~~~~d----g~v~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d------~~i~iwd~~~~~~~~   93 (229)
                      ++..++.|+.+    ..+.++|..+.+-...-....  .....+.+  ++++++.|+.+      ..+.+||+.+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56666777654    678889988875433211111  11222222  56677777655      358888988765432


Q ss_pred             EeccCCCce-eEEEEcCCCCEEEEEeC---------CCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          94 SFEAHSDYV-RCVAVHPTQPFLLTSSD---------DMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        94 ~~~~h~~~i-~~v~~~~~~~~~~s~~~---------d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      .-.....+. .+++. -++.+++.|+.         -..+.+||+... +.....+......-..+.+   ++.+++.|+
T Consensus       133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred             CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeC
Confidence            211111111 12222 24556665543         345778887654 1111111110111111222   356777776


Q ss_pred             CC-----CcEEEEeCCCCC--ceEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         163 LD-----RTVKVWQLGSAS--PNFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       163 ~d-----~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                      .+     ..+.+||..+.+  .+..+........++.+    ++.+++.|+.+     ..+.+||..+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV----GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE----TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE----CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            54     357888886542  11111111111222222    33466666643     568999998764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.93  E-value=0.11  Score=41.34  Aligned_cols=142  Identities=13%  Similarity=0.072  Sum_probs=79.4

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE--EE---ecCcCeEEEEEcCC---CCEEEEEeC-C-----CeEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS--FE---VCDLPVRAAKFVPR---KNWIVTGSD-D-----MQVC   82 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~--~~---~~~~~v~~~~~~~~---~~~l~sg~~-d-----~~i~   82 (229)
                      .-..++|.|++. ++++..+|.|.+++  +++....  +.   ........+.++|+   +..|..... .     ..|.
T Consensus        32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            446899999998 55556679999998  4432111  11   11345789999998   444444332 2     5677


Q ss_pred             EEECCCcc-----eE-EEec---cCCCceeEEEEcCCCCEEEEEeCC-------------CcEEEEecCCc---------
Q psy4653          83 VFNYNTLE-----RF-HSFE---AHSDYVRCVAVHPTQPFLLTSSDD-------------MLIKLWNWEKA---------  131 (229)
Q Consensus        83 iwd~~~~~-----~~-~~~~---~h~~~i~~v~~~~~~~~~~s~~~d-------------~~v~lwd~~~~---------  131 (229)
                      .++.....     .+ ..+.   .....-..++|.|++.++++.+..             ++|..++.+..         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            77765431     11 2232   111123689999999876665421             45666655431         


Q ss_pred             ---eeeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653         132 ---WACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus       132 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                         ......-.++. ....++++|.++.++++-.
T Consensus       189 ~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          189 RRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             CTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred             CCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence               01111122332 2456778885666666544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.86  E-value=0.072  Score=40.95  Aligned_cols=185  Identities=15%  Similarity=0.139  Sum_probs=87.6

Q ss_pred             CCCeEEEEEec-----CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEE
Q psy4653          26 TEPWMLASLYN-----GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNTLERFHS   94 (229)
Q Consensus        26 ~~~~l~~~~~d-----g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~   94 (229)
                      ++..++.|+.+     ..+.+||..+.+-...-.... ..-.++... +++.++.|+.++     .+.+||+.+.+....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            55566666644     357888888765422211111 011122222 566677776553     467788877653222


Q ss_pred             --eccCCCceeEEEEcCCCCEEEEEeCC-------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          95 --FEAHSDYVRCVAVHPTQPFLLTSSDD-------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        95 --~~~h~~~i~~v~~~~~~~~~~s~~~d-------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                        +......-.++.+  ++.+++.|+.+       ..+.+||+... +.....+......-..+.+   ++.+++.|+.+
T Consensus       140 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~  214 (302)
T 2xn4_A          140 APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHD  214 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBS
T ss_pred             CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCC
Confidence              1111111122222  45566666542       35788887654 2211111111111112222   45677777764


Q ss_pred             -----CcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         165 -----RTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       165 -----~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                           ..+.+||..+.+ -..+.....  .-.++.. .  ++.+++.|+.+     ..+.+||.++.+
T Consensus       215 ~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~-~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNA-WRQVADMNMCRRNAGVCA-V--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE-E--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCC-EeeCCCCCCccccCeEEE-E--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence                 367888886542 111211111  1111222 1  33466666654     348999998765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.86  E-value=0.067  Score=39.64  Aligned_cols=103  Identities=11%  Similarity=-0.042  Sum_probs=64.3

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE------EEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV------KSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~------~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      ..+..++|||++.+.++  .+|.+.--+..++...      ..+.. .-....++.|.|+|.+-++  .||.|.=++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36789999998874444  7888776666553221      11111 0112578999999988777  568887666532


Q ss_pred             cce-------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEE
Q psy4653          89 LER-------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK  124 (229)
Q Consensus        89 ~~~-------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~  124 (229)
                      ...       ...-..--+.+..|.|.|++.+.+..  |+.++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            111       11111122568999999999988777  66653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.83  E-value=0.15  Score=41.60  Aligned_cols=141  Identities=14%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEeccC--C--CceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-eee-------
Q psy4653          68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAH--S--DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-ACQ-------  135 (229)
Q Consensus        68 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h--~--~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-~~~-------  135 (229)
                      ++.-++.+ .++.||.-++......+.++..  -  +.|..+..+|+|.+++..+ +..|.|-.+..+. ...       
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            44444443 3466776666644444444432  1  2478899999999998775 5688888886321 000       


Q ss_pred             ---eeeec------ceeeEEEEEEcCCC--CCEEEEEECCCcEEEEeCCCC--CceEEEe---------cCCCceEEEEE
Q psy4653         136 ---QVFEG------HTHYVMQIVINPKD--NNTFASASLDRTVKVWQLGSA--SPNFTLE---------GHEKGVNCVDY  193 (229)
Q Consensus       136 ---~~~~~------~~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~--~~~~~~~---------~h~~~v~~~~~  193 (229)
                         +.+.-      ...+|.++.|+|..  +..|+.=..|+.||+||+...  +|. .+.         .....+.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence               11111      24679999999852  347888899999999998752  333 332         22245667777


Q ss_pred             EeCCCcC--EEEEeeCCCeEEE
Q psy4653         194 YHGGDKP--YLISGADDRLVKI  213 (229)
Q Consensus       194 ~~~~~~~--~l~s~s~d~~i~i  213 (229)
                      .  +++-  |+++.+..|.|+-
T Consensus       188 g--~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          188 S--KDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             C--TTSSCEEEEECTTSCEEEE
T ss_pred             c--CCCcEEEEEecCCCCCEEE
Confidence            3  3332  3444557777743

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.79  E-value=0.17  Score=41.55  Aligned_cols=197  Identities=15%  Similarity=0.245  Sum_probs=122.3

Q ss_pred             EEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEeccC
Q psy4653          20 CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFHSFEAH   98 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h   98 (229)
                      ++--||..+.++-=+ ..+++++|+++...++.+...+ .|.-=.|..+ +.|+-. .+..|.-|+++. ..+.+.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence            455688888666654 7899999999988888776544 4555555533 444443 356789999864 4567777766


Q ss_pred             CC----ceeEEEEcCCCCEEE-EEe------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC--CCCEEEEEECC-
Q psy4653          99 SD----YVRCVAVHPTQPFLL-TSS------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK--DNNTFASASLD-  164 (229)
Q Consensus        99 ~~----~i~~v~~~~~~~~~~-s~~------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d-  164 (229)
                      ..    .|.....+++.+.++ +|-      -.|.+.+|..++.  ..+.++||......+.....  ...+|.-+... 
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~  223 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence            43    455666678877543 331      2367889998764  57888999877665554311  11234444432 


Q ss_pred             --CcEEEEeCCCC---CceE---EEe----c-C-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         165 --RTVKVWQLGSA---SPNF---TLE----G-H-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       165 --~~i~~wd~~~~---~~~~---~~~----~-h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                        +++++-++...   .+.+   ..+    . . .+-..++..  +....++..-..-|.|.+||+.++.++-.
T Consensus       224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv--s~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI--SEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE--ETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe--cccCCEEEEEecCceEEEEecccceeeee
Confidence              68888887543   1111   111    1 0 111233444  33445666778889999999999998754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.65  E-value=0.14  Score=39.29  Aligned_cols=185  Identities=10%  Similarity=0.071  Sum_probs=88.5

Q ss_pred             CCCeEEEEE-ec-----CeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCcc---
Q psy4653          26 TEPWMLASL-YN-----GHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSDD-----MQVCVFNYNTLE---   90 (229)
Q Consensus        26 ~~~~l~~~~-~d-----g~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~~---   90 (229)
                      ++..++.|+ .+     ..+.++|..+.+-...-.... ..-.++.. .++++++.|+.+     ..+.+||+.+.+   
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            445666666 33     478889988865422211101 01112222 256677777754     358888987765   


Q ss_pred             eEEE--eccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEEEE
Q psy4653          91 RFHS--FEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus        91 ~~~~--~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ....  +......-.++.+  ++.+++.|+.+     ..+.+||+.... ............-..+.+   ++.+++.|+
T Consensus        93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG  167 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGG  167 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECC
T ss_pred             eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECC
Confidence            3221  2111111122222  45666666543     357788876532 211111111111111222   456777777


Q ss_pred             CC-----CcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         163 LD-----RTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       163 ~d-----~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                      .+     ..+..||..+.+= ..+.....  .-.++...   ++.+++.|+.+     ..+.+||.++.+
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            55     3577888765421 11111111  11122221   33466666653     468999998765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0078  Score=47.70  Aligned_cols=191  Identities=11%  Similarity=0.023  Sum_probs=100.1

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEEecC-cCeEEEEEc--CCCCEEEEE--eCCCeEEEEECCCcceEEEeccC----
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFEVCD-LPVRAAKFV--PRKNWIVTG--SDDMQVCVFNYNTLERFHSFEAH----   98 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~sg--~~d~~i~iwd~~~~~~~~~~~~h----   98 (229)
                      ..+++++.||.|.-.|..+|+.+..++... .+.....-.  +.+..++.+  +.||.+..++.+++.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            468899999999999999999999887541 222221111  112234433  68999999998887554433221    


Q ss_pred             CCceeE---EEE-c----CCCCEEEEEeCCCcEEEEecCCceeeeeeeecce-ee-----EEEEEEc----CCCCCEEEE
Q psy4653          99 SDYVRC---VAV-H----PTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHT-HY-----VMQIVIN----PKDNNTFAS  160 (229)
Q Consensus        99 ~~~i~~---v~~-~----~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~-~~-----v~~~~~~----~~~~~~l~s  160 (229)
                      ..++..   ..+ .    ..+..+++++.++.+...|+.++...-..-.+.. +.     ..+....    ...+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            111111   000 0    0345678889999999999887744322211111 10     0011100    012345666


Q ss_pred             EECCCcEEEEeCCCCCceEEEe-----cCCCc--eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEE
Q psy4653         161 ASLDRTVKVWQLGSASPNFTLE-----GHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCV  222 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~~-----~h~~~--v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~  222 (229)
                      +..+..+.+.+ ++++ ++...     .....  +.. .+....++.+ +.++.||.|.-+|.++|+.+
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~-~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~  235 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLAL-QNTFSKDGMC-IAPFRDKSLLASDLDFRIAR  235 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHT-TCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEeccccccccccccccc-ccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence            66676666666 3343 33221     11000  000 0000112333 45788999999998888765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.39  E-value=0.23  Score=38.35  Aligned_cols=152  Identities=9%  Similarity=0.052  Sum_probs=73.4

Q ss_pred             eEEEEEccCCCeEEEEEe----c-------CeEEEEEcCCCCeEEEEEecCcC--eEEEEEcCCCCEEEEEeCC------
Q psy4653          18 VKCCDLHPTEPWMLASLY----N-------GHVHVWNHETNQNVKSFEVCDLP--VRAAKFVPRKNWIVTGSDD------   78 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~----d-------g~v~~wd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~sg~~d------   78 (229)
                      ........++..++.|+.    +       ..+..||..+.+-... .....+  -.++... ++++++.|+.+      
T Consensus        37 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~  114 (315)
T 4asc_A           37 NHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGER  114 (315)
T ss_dssp             SEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCEESCEEEEE-TTEEEEECCEESSTTCC
T ss_pred             cceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCc
Confidence            333344457777788874    1       2377888887654221 111101  1112222 56666677632      


Q ss_pred             --CeEEEEECCCcceEEEeccCCCce-eEEEEcCCCCEEEEEeC-C-----CcEEEEecCCc-eeeeeeeecceeeEEEE
Q psy4653          79 --MQVCVFNYNTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSSD-D-----MLIKLWNWEKA-WACQQVFEGHTHYVMQI  148 (229)
Q Consensus        79 --~~i~iwd~~~~~~~~~~~~h~~~i-~~v~~~~~~~~~~s~~~-d-----~~v~lwd~~~~-~~~~~~~~~~~~~v~~~  148 (229)
                        ..+.++|+.+.+-...-.....+. .+++. .++.+++.|+. +     ..+.+||+... +.....+......-..+
T Consensus       115 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  193 (315)
T 4asc_A          115 CLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT  193 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred             ccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE
Confidence              358888988765322111111111 12222 34556666665 2     46888887654 22111111111111122


Q ss_pred             EEcCCCCCEEEEEECCC-----cEEEEeCCCC
Q psy4653         149 VINPKDNNTFASASLDR-----TVKVWQLGSA  175 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~-----~i~~wd~~~~  175 (229)
                      .+   ++.+++.|+.++     .+.+||..+.
T Consensus       194 ~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          194 VH---DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EE---TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EE---CCEEEEEeccCCCCccceEEEEECCCC
Confidence            22   456777777654     4777887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.36  E-value=0.19  Score=38.54  Aligned_cols=183  Identities=10%  Similarity=0.084  Sum_probs=85.6

Q ss_pred             CCeEEEEEec----CeEEEEEcCCCCeEEEEEecCc--CeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEE-
Q psy4653          27 EPWMLASLYN----GHVHVWNHETNQNVKSFEVCDL--PVRAAKFVPRKNWIVTGSDDM-----QVCVFNYNTLERFHS-   94 (229)
Q Consensus        27 ~~~l~~~~~d----g~v~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~d~-----~i~iwd~~~~~~~~~-   94 (229)
                      +..++.|+.+    ..+..+|..+.+-... .....  .-.++... ++++++.|+.++     .+.+||+.+.+.... 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQV-AELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEc-ccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455566543    4678899887653222 11111  11122222 566777776543     578888877653222 


Q ss_pred             -eccCCCceeEEEEcCCCCEEEEEeCCC-----cEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECC---
Q psy4653          95 -FEAHSDYVRCVAVHPTQPFLLTSSDDM-----LIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLD---  164 (229)
Q Consensus        95 -~~~h~~~i~~v~~~~~~~~~~s~~~d~-----~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---  164 (229)
                       +......-.++.+  ++.+++.|+.++     .+.+||+... +.....+......-..+.+   ++.+++.|+.+   
T Consensus        94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~  168 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVAS  168 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTT
T ss_pred             CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCC
Confidence             1111111122222  456666666543     4667887543 1111111111111111222   35667766643   


Q ss_pred             ----CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         165 ----RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       165 ----~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                          ..+.+||..+.+=  +..+...... .++...   ++.+++.|+.+     ..+.+||.++.+
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CccccEEEEEeCCCCcEEECCCCcccccc-ccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence                3477888765421  1111111111 122221   33466666654     468899988764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.30  E-value=0.18  Score=38.87  Aligned_cols=184  Identities=11%  Similarity=0.071  Sum_probs=88.4

Q ss_pred             CCCeEEEEEe----c-----CeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCc
Q psy4653          26 TEPWMLASLY----N-----GHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDD-----MQVCVFNYNTL   89 (229)
Q Consensus        26 ~~~~l~~~~~----d-----g~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d-----~~i~iwd~~~~   89 (229)
                      ++..++.|+.    +     +.+.++|..+.+-...-...  -.....+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5666666665    2     46788888876532221100  011222222  56677776643     35778888776


Q ss_pred             ceEEE--eccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          90 ERFHS--FEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        90 ~~~~~--~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      +....  +......-.++.+  ++.+++.|+.+     ..+.+||+... +.....+......-..+.+   ++.+++.|
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~G  222 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAG  222 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEe
Confidence            53221  1111111122222  55666666654     45788887653 1111111111111112222   45677777


Q ss_pred             ECC-----CcEEEEeCCCCCc--eEEEecCCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         162 SLD-----RTVKVWQLGSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       162 ~~d-----~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                      +.+     ..+.+||+.+.+=  +..+..... -.++...   ++.+++.|+.+     ..+.+||.++.+
T Consensus       223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRS-ALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCCccceEEEEeCCCCcEEECCCCCCCcc-ceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            765     4688888865421  111111111 1122221   23466666543     468899998764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.25  E-value=0.69  Score=42.84  Aligned_cols=142  Identities=11%  Similarity=0.125  Sum_probs=84.7

Q ss_pred             CCeEEEEE----------ecCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE-
Q psy4653          27 EPWMLASL----------YNGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS-   94 (229)
Q Consensus        27 ~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-   94 (229)
                      .+++++|+          ..|.|.++++..++....++ ..+.++.+++-. +|+ |++| -..++++|++...+.++. 
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~-ig~~l~vy~l~~~~~L~~~  920 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLAS-INSTVRLYEWTTEKELRTE  920 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEE-ETTEEEEEEECTTSCEEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEE-cCCEEEEEECCCCceEEEE
Confidence            46788886          23789999987554433322 235678888755 354 4444 357899999976554441 


Q ss_pred             eccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653          95 FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus        95 ~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      ..... .|..+...-.+.+++.|..-.+|.+...+........+  .-..-.++++.+-.  ...++.+..++.+.+...
T Consensus       921 ~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          921 CNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             EEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEE
T ss_pred             eeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc--cCcEEEEcCCCcEEEEec
Confidence            11111 13343444456788899887787765533221112222  22344566776642  357788899999999876


Q ss_pred             CC
Q psy4653         173 GS  174 (229)
Q Consensus       173 ~~  174 (229)
                      ..
T Consensus       998 ~~  999 (1158)
T 3ei3_A          998 DS  999 (1158)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.15  E-value=0.31  Score=37.42  Aligned_cols=182  Identities=6%  Similarity=0.013  Sum_probs=87.1

Q ss_pred             CeEEEEEe--cCeEEEEEcCCCCeEEEE--EecCcCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCcceEEEeccCC
Q psy4653          28 PWMLASLY--NGHVHVWNHETNQNVKSF--EVCDLPVRAAKFVPRKNWIVTGSDD----MQVCVFNYNTLERFHSFEAHS   99 (229)
Q Consensus        28 ~~l~~~~~--dg~v~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~h~   99 (229)
                      ..++.|+.  ...+.+||..+.+-...-  ...-.....+.  .++++++.|+.+    ..+.++|+.+.+....-....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555654  467889999887543221  11011122222  256677777654    568888988765432211111


Q ss_pred             Cc--eeEEEEcCCCCEEEEEeCC------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-------
Q psy4653         100 DY--VRCVAVHPTQPFLLTSSDD------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASL-------  163 (229)
Q Consensus       100 ~~--i~~v~~~~~~~~~~s~~~d------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------  163 (229)
                      .+  -.++.+  ++.+++.|+.+      ..+.+||.... +.....+......-..+.+   ++.+++.|+.       
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTC
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcc
Confidence            11  122222  55666767654      45888887654 2211111110111111222   4566666653       


Q ss_pred             --CCcEEEEeCCCCCceEEEecCCC--ceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         164 --DRTVKVWQLGSASPNFTLEGHEK--GVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       164 --d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                        -..+.+||..+.+ -..+.....  .-.++...   ++.+++.|+.+     ..+.+||..+.+
T Consensus       166 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          166 RVLNSCEVYDPATET-WTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             cccceEEEeCCCCCe-EEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence              2347788886542 111211111  11122221   23455555543     458889988764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.09  E-value=0.072  Score=46.01  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=68.2

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCcce--EEEecc-CCCceeEEEEcCCCCEEEEEeC-CCcEEE
Q psy4653          62 AAKFVP-RKNWIVTGSDDM-----------QVCVFNYNTLER--FHSFEA-HSDYVRCVAVHPTQPFLLTSSD-DMLIKL  125 (229)
Q Consensus        62 ~~~~~~-~~~~l~sg~~d~-----------~i~iwd~~~~~~--~~~~~~-h~~~i~~v~~~~~~~~~~s~~~-d~~v~l  125 (229)
                      ++++.+ ++++++.|+.+.           .+.+||+.+++.  +..+.. +.....++++..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 788888887543           578899887653  222221 2333446788899999988884 568999


Q ss_pred             EecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEE-CC-----CcEEEEeCCCC
Q psy4653         126 WNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASAS-LD-----RTVKVWQLGSA  175 (229)
Q Consensus       126 wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d-----~~i~~wd~~~~  175 (229)
                      ||.... +.....+...... ..+...+ ++.+++.|+ .+     ..+.+||..+.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~-~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGY-QSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSS-CEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcCCceeECCCCCccccc-cceEEec-CCeEEEEeCcccCCcccccceEeCCCCC
Confidence            998654 1111111111111 2233333 578888888 44     56889998654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.08  E-value=0.89  Score=42.11  Aligned_cols=171  Identities=11%  Similarity=0.208  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCeEEEEEecC-cCeEEEE---EcCC-CCEEEEEe----------CCCeEEEEECCCcceEEEe--ccCCC
Q psy4653          38 HVHVWNHETNQNVKSFEVCD-LPVRAAK---FVPR-KNWIVTGS----------DDMQVCVFNYNTLERFHSF--EAHSD  100 (229)
Q Consensus        38 ~v~~wd~~~~~~~~~~~~~~-~~v~~~~---~~~~-~~~l~sg~----------~d~~i~iwd~~~~~~~~~~--~~h~~  100 (229)
                      .|++.|..+.+.+..++..+ +.+.++.   |..+ ..+|++|+          ..|.|.++++...+ +..+  ....+
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g  886 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESS
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCC
Confidence            47788888877777666543 2344444   3322 46888887          35789999886432 2221  12356


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-ceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceE
Q psy4653         101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF  179 (229)
Q Consensus       101 ~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  179 (229)
                      .+++++--. |.++++.  ..+|++|++.......  .+. +-..+..+.+.. .+++++.|..-..+.+...+......
T Consensus       887 ~v~al~~~~-g~Lla~i--g~~l~vy~l~~~~~L~--~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L  960 (1158)
T 3ei3_A          887 AVYSMVEFN-GKLLASI--NSTVRLYEWTTEKELR--TECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNF  960 (1158)
T ss_dssp             CEEEEEEET-TEEEEEE--TTEEEEEEECTTSCEE--EEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEE
T ss_pred             cCEEEeeeC-CEEEEEc--CCEEEEEECCCCceEE--EEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeE
Confidence            788876443 4333333  4699999997543222  111 111122222222 35678888877777776654333222


Q ss_pred             E-E--ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         180 T-L--EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       180 ~-~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      . +  ..+...+.++.+...   ..++.+..+|.+.+.....
T Consensus       961 ~~~a~D~~~~~vta~~~ld~---~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          961 EEIARDFNPNWMSAVEILDD---DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEECCSCBCEEEEEEEET---TEEEEEETTSEEEEEEECT
T ss_pred             EEEEeecccccEEEEEEEcc---CcEEEEcCCCcEEEEecCC
Confidence            2 2  223455777777532   2577788999999887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.02  E-value=0.42  Score=37.89  Aligned_cols=198  Identities=13%  Similarity=0.077  Sum_probs=103.4

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCC-eEEEEE---ecCcCeEEEEEcCC---CCEEEEEeC----C----CeE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ-NVKSFE---VCDLPVRAAKFVPR---KNWIVTGSD----D----MQV   81 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~sg~~----d----~~i   81 (229)
                      .-..++|.|++. |+++..+|.|+++| .+++ .+..+.   ........+.++|+   +..|.....    +    ..|
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            457899999997 55666679999997 3444 111111   11245788999997   444444332    2    456


Q ss_pred             EEEECCCc-------ceE-EEecc-CCCceeEEEEcCCCCEEEEEeCC-------------CcEEEEecCCce-------
Q psy4653          82 CVFNYNTL-------ERF-HSFEA-HSDYVRCVAVHPTQPFLLTSSDD-------------MLIKLWNWEKAW-------  132 (229)
Q Consensus        82 ~iwd~~~~-------~~~-~~~~~-h~~~i~~v~~~~~~~~~~s~~~d-------------~~v~lwd~~~~~-------  132 (229)
                      ..|+....       +.+ ..+.. ....-..|+|.|++.++++.+..             ++|...+.+..-       
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            67766543       111 11221 11123579999999877765431             455555543210       


Q ss_pred             eeeeeeecceeeEEEEEEcCCCCCEEEEEECCC---cEEEEeCCC----------------CCceEEE-ecCCCceEEEE
Q psy4653         133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDR---TVKVWQLGS----------------ASPNFTL-EGHEKGVNCVD  192 (229)
Q Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~----------------~~~~~~~-~~h~~~v~~~~  192 (229)
                      .....-.++.. ...++|+|.++.++++-....   +|.+-....                ..+...+ ..| .....+.
T Consensus       188 ~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-~ap~G~~  265 (354)
T 3a9g_A          188 NSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET-WAPSGAS  265 (354)
T ss_dssp             TCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CCEEEEE
T ss_pred             CCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC-cCCcceE
Confidence            01111123322 356788885566666543222   233332111                0123333 222 2355666


Q ss_pred             EEeC-----CCcCEEEEeeCCCeEEEEECCC
Q psy4653         193 YYHG-----GDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       193 ~~~~-----~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      |+..     .++.++++....+.|...++..
T Consensus       266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             ECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             EECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            6422     2344666656667787777764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.92  E-value=0.55  Score=38.34  Aligned_cols=134  Identities=10%  Similarity=0.100  Sum_probs=82.6

Q ss_pred             ecCeEEEEEcCCCCeEEEEEec----CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc------------eEEEecc-
Q psy4653          35 YNGHVHVWNHETNQNVKSFEVC----DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE------------RFHSFEA-   97 (229)
Q Consensus        35 ~dg~v~~wd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~------------~~~~~~~-   97 (229)
                      .++.|+.-++.....-+.+...    ...+..+..+|+|++||..+.. .|.|-.+..+.            .++.+.- 
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcC
Confidence            3577886677754332333332    1257889999999999888544 57777765211            1222321 


Q ss_pred             -----CCCceeEEEEcCCC---CEEEEEeCCCcEEEEecCCceeeeeeee---------cceeeEEEEEEcCCCCCEEEE
Q psy4653          98 -----HSDYVRCVAVHPTQ---PFLLTSSDDMLIKLWNWEKAWACQQVFE---------GHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        98 -----h~~~i~~v~~~~~~---~~~~s~~~d~~v~lwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~s  160 (229)
                           ....|..+.|||-+   ..+++-..|+.|++||+.........+.         .....+..++|.+ ++-.|..
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEE
Confidence                 24679999999964   4799999999999999975211101111         1124467778876 4555544


Q ss_pred             EE--CCCcEEEE
Q psy4653         161 AS--LDRTVKVW  170 (229)
Q Consensus       161 ~~--~d~~i~~w  170 (229)
                      .+  .+|-|+..
T Consensus       197 l~~t~~GDIYAl  208 (452)
T 3pbp_A          197 LNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EecCCCCCEEEE
Confidence            34  66777644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.92  E-value=0.35  Score=45.48  Aligned_cols=195  Identities=15%  Similarity=0.233  Sum_probs=112.3

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCC
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFHSFEAHS   99 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~   99 (229)
                      +--||..+.++-=+ ..+++++|+++...++.+...+ +|.-=.|..+. .|+-. .+..|..|++.. ..+.+.+..|.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEE-cCCeEEEeccCCCCccHHHHhcch
Confidence            34578887665544 7899999999977777665433 45555555433 33333 256789999863 34555555552


Q ss_pred             ----CceeEEEEcCCCCEEE-EE------eCCCcEEEEecCCceeeeeeeecceeeEEEEEEc--CCCCCEEEEEEC---
Q psy4653         100 ----DYVRCVAVHPTQPFLL-TS------SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVIN--PKDNNTFASASL---  163 (229)
Q Consensus       100 ----~~i~~v~~~~~~~~~~-s~------~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~---  163 (229)
                          ..|..-..+++.+.++ +|      .-.|.+.+|+.++.  ..+.++||..........  +....+|..+..   
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence                3455566677777543 33      13478889998653  567778886655444432  211223332222   


Q ss_pred             CCcEEEEeCCCC---CceEEEe------cC---CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEE
Q psy4653         164 DRTVKVWQLGSA---SPNFTLE------GH---EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       164 d~~i~~wd~~~~---~~~~~~~------~h---~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  223 (229)
                      .+++++-++...   .+.+..+      ..   .+-..++..  ++...++..-+.-|.|.++|+.++.++-
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v--s~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI--SEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe--ccccCEEEEEecCceEEEEecccchhhh
Confidence            368888887542   1211111      00   000112222  2334466667788999999999998763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.80  E-value=0.37  Score=37.08  Aligned_cols=187  Identities=11%  Similarity=0.042  Sum_probs=89.0

Q ss_pred             EccCCCeEEEEEe----cCeEEEEEcCCCCeEEEEEecC-cCeEEEEEcCCCCEEEEEeC----C-----CeEEEEECCC
Q psy4653          23 LHPTEPWMLASLY----NGHVHVWNHETNQNVKSFEVCD-LPVRAAKFVPRKNWIVTGSD----D-----MQVCVFNYNT   88 (229)
Q Consensus        23 ~~p~~~~l~~~~~----dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~----d-----~~i~iwd~~~   88 (229)
                      ..-++..++.|+.    -..+.++|..+.+-...-.... ..-.++... ++++++.|+.    +     ..+.++|+.+
T Consensus        21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            3445667777764    2468889988765432210000 011122222 5666677665    2     3577888877


Q ss_pred             cceEEE--eccCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-eeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          89 LERFHS--FEAHSDYVRCVAVHPTQPFLLTSSDD-----MLIKLWNWEKAW-ACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        89 ~~~~~~--~~~h~~~i~~v~~~~~~~~~~s~~~d-----~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      .+....  +......-.++.+  ++.+++.|+.+     ..+.+||+.... .....+......-..+.+   ++.+++.
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~  174 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAV  174 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEE
T ss_pred             CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEE
Confidence            653221  1111111122222  45666666543     357788876531 111111111111112222   4567777


Q ss_pred             EECC-----CcEEEEeCCCCCceEEE-ec--CCCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         161 ASLD-----RTVKVWQLGSASPNFTL-EG--HEKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       161 ~~~d-----~~i~~wd~~~~~~~~~~-~~--h~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                      |+.+     ..+..||..+.+  ++. ..  ....-.+....   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            7754     357788876542  111 11  01111122221   33466666654     568999988764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.76  E-value=0.67  Score=38.16  Aligned_cols=103  Identities=16%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--------cCcCeEEEEEcCC---CCEEEEEeC--------
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--------CDLPVRAAKFVPR---KNWIVTGSD--------   77 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~l~sg~~--------   77 (229)
                      .-..++|.|+++++++-...+.|.+++..+++.......        .+.....++|+|+   +..|.....        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            457999999998555544335799898766654322211        1234678999995   555444332        


Q ss_pred             -----CCeEEEEECCCc-------ceEE-Eecc-CCCceeEEEEcCCCCEEEEEeC
Q psy4653          78 -----DMQVCVFNYNTL-------ERFH-SFEA-HSDYVRCVAVHPTQPFLLTSSD  119 (229)
Q Consensus        78 -----d~~i~iwd~~~~-------~~~~-~~~~-h~~~i~~v~~~~~~~~~~s~~~  119 (229)
                           ...|.-++....       +.+. .+.. ....-..|+|.|++.++++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 124444444221       1111 1221 1224679999999997776553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.63  E-value=0.45  Score=37.38  Aligned_cols=52  Identities=19%  Similarity=0.123  Sum_probs=27.8

Q ss_pred             CCCeEEEEEe-c---------CeEEEEEcCCCCeEEEEEec-C-cCeEEEEEcCCCCEEEEEeCC
Q psy4653          26 TEPWMLASLY-N---------GHVHVWNHETNQNVKSFEVC-D-LPVRAAKFVPRKNWIVTGSDD   78 (229)
Q Consensus        26 ~~~~l~~~~~-d---------g~v~~wd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~sg~~d   78 (229)
                      ++.+++.|+. +         +.+.++|..+.+-...-... . ..-.++.. .++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            5666677765 2         46888998876543221111 1 11122222 467777788754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.62  E-value=0.76  Score=37.75  Aligned_cols=181  Identities=9%  Similarity=0.100  Sum_probs=109.2

Q ss_pred             ecCeEEEEEcCC-CCeEEEEEecC----cCeEEEEEcCCCCEEEEEe-------CCCeEEEEECCCcceEEEeccCCCce
Q psy4653          35 YNGHVHVWNHET-NQNVKSFEVCD----LPVRAAKFVPRKNWIVTGS-------DDMQVCVFNYNTLERFHSFEAHSDYV  102 (229)
Q Consensus        35 ~dg~v~~wd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg~-------~d~~i~iwd~~~~~~~~~~~~h~~~i  102 (229)
                      .+..|.-|+++. ..+.+.|..+.    -.|..-..+++.+|++..+       -.|.+.+|..+.. .-+.+++|....
T Consensus       123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F  201 (494)
T 1bpo_A          123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  201 (494)
T ss_dssp             CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred             cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence            368899999975 35667776653    3477777788889865433       2367889988754 336677887665


Q ss_pred             eEEEEcCCCC---EEEEEeCC---CcEEEEecCCce--------eeeeee-e--cceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653         103 RCVAVHPTQP---FLLTSSDD---MLIKLWNWEKAW--------ACQQVF-E--GHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus       103 ~~v~~~~~~~---~~~s~~~d---~~v~lwd~~~~~--------~~~~~~-~--~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      ..+.+..+..   .+.-+...   +++.+-++....        +...++ .  ...+-...+.+++. -..+.--..-|
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK~G  280 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYG  280 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEETTS
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc-CCEEEEEecCc
Confidence            5555543221   33333332   678888775320        011111 1  11233345556664 34666678899


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .|.++|+.++.+++.-+--.+.+...+..... +. ++.-...|.|.--.++..
T Consensus       281 ~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~G-i~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          281 YIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AG-IIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TE-EEEEETTCEEEEEEECTT
T ss_pred             eEEEEecccceeeeeecccCCceEEecccCCC-Cc-EEEEccCceEEEEEEccc
Confidence            99999999999998877666667655543332 22 444457777665555443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.47  E-value=0.64  Score=35.88  Aligned_cols=149  Identities=7%  Similarity=-0.007  Sum_probs=68.9

Q ss_pred             EEccCCCeEEEEEe----cC-------eEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCC-------CeEE
Q psy4653          22 DLHPTEPWMLASLY----NG-------HVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDD-------MQVC   82 (229)
Q Consensus        22 ~~~p~~~~l~~~~~----dg-------~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d-------~~i~   82 (229)
                      ....++..++.|+.    ++       .+..+|..+.+-...-... ...-.++... ++++.+.|+.+       ..+.
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEE
Confidence            33456677777772    12       2777888776543221100 0111222222 56666677653       2477


Q ss_pred             EEECCCcceEEEeccCCCcee-EEEEcCCCCEEEEEeC------CCcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCC
Q psy4653          83 VFNYNTLERFHSFEAHSDYVR-CVAVHPTQPFLLTSSD------DMLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~-~v~~~~~~~~~~s~~~------d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      ++|+.+.+....-.....+.. +++. .++.+++.|+.      -..+.+||+... +............-..+.+   +
T Consensus       131 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~  206 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---K  206 (318)
T ss_dssp             EEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---T
T ss_pred             EEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---C
Confidence            788877653322111111111 2222 35566666653      235888998654 2211111111111112222   4


Q ss_pred             CCEEEEEECCC-----cEEEEeCCCC
Q psy4653         155 NNTFASASLDR-----TVKVWQLGSA  175 (229)
Q Consensus       155 ~~~l~s~~~d~-----~i~~wd~~~~  175 (229)
                      +.+++.|+.+.     .+.+||..+.
T Consensus       207 ~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          207 GKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CEEEEEcCcCCCCccceEEEEECCCC
Confidence            56777776443     4667887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.02  E-value=0.55  Score=34.82  Aligned_cols=138  Identities=7%  Similarity=-0.079  Sum_probs=75.1

Q ss_pred             cCCCeEEEEEecCeEEEEEcCCCCe------EEEEEe-cCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce------
Q psy4653          25 PTEPWMLASLYNGHVHVWNHETNQN------VKSFEV-CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER------   91 (229)
Q Consensus        25 p~~~~l~~~~~dg~v~~wd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~------   91 (229)
                      |....|++...| +|..=...++..      ...... .-..+..+.|+|++.+-++  .+|.+.-.+..+.+.      
T Consensus         2 ~~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            2 GGESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             CcceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence            344556666666 655444444331      112211 1246789999998886666  677655445433211      


Q ss_pred             EEEec-cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee------eeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          92 FHSFE-AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC------QQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        92 ~~~~~-~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      -..+- .-.....++.|.|++.+.++  .|+.|.-++-.+...-      ..+-.+--..+..+.+.| ++.+.+..  |
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--d  153 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--G  153 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--C
Confidence            01110 01122579999999998888  5698887774321110      111111113467888888 57666654  7


Q ss_pred             CcEEEE
Q psy4653         165 RTVKVW  170 (229)
Q Consensus       165 ~~i~~w  170 (229)
                      +.+.-+
T Consensus       154 g~lyr~  159 (236)
T 1tl2_A          154 QQFYKA  159 (236)
T ss_dssp             TEEEEE
T ss_pred             CcEEec
Confidence            775443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.85  E-value=1.8  Score=40.95  Aligned_cols=210  Identities=10%  Similarity=0.112  Sum_probs=109.4

Q ss_pred             hhhhcccCCC--ceEEEEEccCCCeEEEEEecCeEEEEEcCC-CCeEEEEEec----CcCeEEEEEcCCCCEEEEEe---
Q psy4653           7 IKRKLTARSD--RVKCCDLHPTEPWMLASLYNGHVHVWNHET-NQNVKSFEVC----DLPVRAAKFVPRKNWIVTGS---   76 (229)
Q Consensus         7 ~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~sg~---   76 (229)
                      .+.+++.|.-  +|.==.|-.... |+-. .+..|.-|++.. ..+.+.|..+    .-.|..-.-+++.+|++..+   
T Consensus        95 ~k~klks~~~~e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~  172 (1630)
T 1xi4_A           95 MKSKMKAHTMTDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  172 (1630)
T ss_pred             HhhhhcccccCCCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence            3445555543  333334443332 2222 357899999974 3444455444    23577777788888765433   


Q ss_pred             ----CCCeEEEEECCCcceEEEeccCCCceeEEEEcC--CCC-EEEEEeC---CCcEEEEecCCc----eee----eeee
Q psy4653          77 ----DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP--TQP-FLLTSSD---DMLIKLWNWEKA----WAC----QQVF  138 (229)
Q Consensus        77 ----~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~--~~~-~~~s~~~---d~~v~lwd~~~~----~~~----~~~~  138 (229)
                          -.|.+.++..+.. .-+.+++|.+....+....  ... .+.-+..   .+++.|-++...    ...    ..++
T Consensus       173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~  251 (1630)
T 1xi4_A          173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF  251 (1630)
T ss_pred             CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence                3478889887653 2345566765544444431  112 2222211   257777777432    010    0111


Q ss_pred             -e--cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         139 -E--GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       139 -~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                       .  ....-...+.+++.. ..+.--..-|.|.++|+.++.+++.-+--..+|...+...... . ++.-...|.|.--.
T Consensus       252 ~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~-g-~~~vnr~G~vl~v~  328 (1630)
T 1xi4_A          252 FPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA-G-IIGVNRKGQVLSVC  328 (1630)
T ss_pred             CCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCC-c-eEEEcCCceEEEEE
Confidence             0  012223344555543 4555668889999999999988776654445555444332222 2 33334556655544


Q ss_pred             CCCCeEE
Q psy4653         216 YQNKTCV  222 (229)
Q Consensus       216 ~~~~~~~  222 (229)
                      +...+.+
T Consensus       329 v~~~~iv  335 (1630)
T 1xi4_A          329 VEEENII  335 (1630)
T ss_pred             Eccchhh
Confidence            4444433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.45  E-value=2.3  Score=37.05  Aligned_cols=194  Identities=9%  Similarity=0.041  Sum_probs=97.3

Q ss_pred             cCCCeEEEEEec----CeEEEEEcCCCCeEEEE-E------ecCcCeEEEEEcC-CCCEEEEEeCCC------eEEEEEC
Q psy4653          25 PTEPWMLASLYN----GHVHVWNHETNQNVKSF-E------VCDLPVRAAKFVP-RKNWIVTGSDDM------QVCVFNY   86 (229)
Q Consensus        25 p~~~~l~~~~~d----g~v~~wd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~sg~~d~------~i~iwd~   86 (229)
                      .++..++.|+.+    +.+.++|..+++-...- .      .....-.++...+ +++.++.|+.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456666777643    46888998887654332 1      0011123333343 677777776543      4778888


Q ss_pred             CCcceEEEeccCCCce-eEEEEcCCCCEEEEEeCCC--cEEEEecCCc-eeeeee---eecceeeEEEEEEcCCCCCEEE
Q psy4653          87 NTLERFHSFEAHSDYV-RCVAVHPTQPFLLTSSDDM--LIKLWNWEKA-WACQQV---FEGHTHYVMQIVINPKDNNTFA  159 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i-~~v~~~~~~~~~~s~~~d~--~v~lwd~~~~-~~~~~~---~~~~~~~v~~~~~~~~~~~~l~  159 (229)
                      .+.+....-.....+. .+.+...++.+++.|+.++  .+.+||.... |.....   .......-..+.++..++.+++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            7754322211111111 2333334777777776654  6889987654 221111   1000111122334433356777


Q ss_pred             EEECC-------CcEEEEeCCCCCc-----eEEEec---CC-CceEEEEEEeCCCcCEEEEeeC--------CCeEEEEE
Q psy4653         160 SASLD-------RTVKVWQLGSASP-----NFTLEG---HE-KGVNCVDYYHGGDKPYLISGAD--------DRLVKIWD  215 (229)
Q Consensus       160 s~~~d-------~~i~~wd~~~~~~-----~~~~~~---h~-~~v~~~~~~~~~~~~~l~s~s~--------d~~i~iwd  215 (229)
                      .|+.+       ..+..||+.+..-     -..+..   .. ....++.+  + ++.+++.|+.        ...|.+||
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI--T-PRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE--E-TTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe--C-CCEEEEECCccCCCCCCCCCeEEEEE
Confidence            77752       3578888876651     112211   11 11122222  2 1345666663        34689999


Q ss_pred             CCCCeE
Q psy4653         216 YQNKTC  221 (229)
Q Consensus       216 ~~~~~~  221 (229)
                      ..+.+-
T Consensus       633 ~~t~~W  638 (695)
T 2zwa_A          633 PLSETL  638 (695)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            987653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.29  E-value=1.6  Score=34.54  Aligned_cols=142  Identities=11%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE---E----EecCcCeEEEEEcCC---CCEEEEE-eC-------C
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS---F----EVCDLPVRAAKFVPR---KNWIVTG-SD-------D   78 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~sg-~~-------d   78 (229)
                      .-..++|.|+++.++++...|.|++++.. ++....   +    .........+.++|+   +..|... +.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            45789999999856666678999999854 322111   1    111234688999995   4444333 22       2


Q ss_pred             CeEEEEECCCc--c--eEE----Eecc---CCCceeEEEEcCCCCEEEEEeCC-------------CcEEEEecCCce--
Q psy4653          79 MQVCVFNYNTL--E--RFH----SFEA---HSDYVRCVAVHPTQPFLLTSSDD-------------MLIKLWNWEKAW--  132 (229)
Q Consensus        79 ~~i~iwd~~~~--~--~~~----~~~~---h~~~i~~v~~~~~~~~~~s~~~d-------------~~v~lwd~~~~~--  132 (229)
                      ..|.-+++...  +  ...    .+..   ....-..|.|.|++.++++.+..             ++|.-.+.+..-  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            24555655432  1  111    1111   11123579999999766665432             456666654320  


Q ss_pred             ----------eeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653         133 ----------ACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus       133 ----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                                .....-.++. ....++|+|.++.++++
T Consensus       178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                      1111112333 34678888855555554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.13  E-value=1.7  Score=34.47  Aligned_cols=150  Identities=12%  Similarity=0.183  Sum_probs=86.0

Q ss_pred             EEEEEccCCCeEEEEE-------------ecCeEEEEEcCC--CCeEEEEEec-------CcCeEEEEEcC--CCC--EE
Q psy4653          19 KCCDLHPTEPWMLASL-------------YNGHVHVWNHET--NQNVKSFEVC-------DLPVRAAKFVP--RKN--WI   72 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~-------------~dg~v~~wd~~~--~~~~~~~~~~-------~~~v~~~~~~~--~~~--~l   72 (229)
                      ..+...|+|. +++++             .+|.|.++|..+  ++. ..+...       ...-..+.+.+  ++.  ++
T Consensus        53 EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           53 EDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             ceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            4555667664 45554             689999999974  332 222221       12456676655  343  34


Q ss_pred             EEEeC--CCeEEEEECCCc--c--eEEEeccC-CCceeEEEEcCCCCEEEEEe-----------------CCCcEEEEec
Q psy4653          73 VTGSD--DMQVCVFNYNTL--E--RFHSFEAH-SDYVRCVAVHPTQPFLLTSS-----------------DDMLIKLWNW  128 (229)
Q Consensus        73 ~sg~~--d~~i~iwd~~~~--~--~~~~~~~h-~~~i~~v~~~~~~~~~~s~~-----------------~d~~v~lwd~  128 (229)
                      ++-..  +..|.+|+++..  .  .+..+.+. -...+.+.+.+++.++++..                 ..+.|..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44333  457788876542  1  23334332 23568899999998877764                 1244555554


Q ss_pred             CCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC
Q psy4653         129 EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS  174 (229)
Q Consensus       129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  174 (229)
                      .   .+..+.. .-...+.++|+|+...++++-+..++|..|++..
T Consensus       211 ~---~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 N---DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             T---CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             C---eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            2   2222222 2234578999994334555666788999999864

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.74  E-value=1.8  Score=33.25  Aligned_cols=179  Identities=6%  Similarity=-0.001  Sum_probs=84.1

Q ss_pred             EEEEEecCeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeC-----C--C----eEEEEECCCcceEEEec
Q psy4653          30 MLASLYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSD-----D--M----QVCVFNYNTLERFHSFE   96 (229)
Q Consensus        30 l~~~~~dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~-----d--~----~i~iwd~~~~~~~~~~~   96 (229)
                      ++.|+  ..+..||..+++-.. ....  ...........++++++.|+.     .  .    .+..||+.+.+....-.
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            34444  678999999876533 1111  111222233446777777773     1  1    26677887765322111


Q ss_pred             cCCCce-eEEEEcCCCCEEEEEeCC--------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEEC-C-
Q psy4653          97 AHSDYV-RCVAVHPTQPFLLTSSDD--------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASL-D-  164 (229)
Q Consensus        97 ~h~~~i-~~v~~~~~~~~~~s~~~d--------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d-  164 (229)
                      ....+- .+++.. ++.+++.|+.+        ..+.+||.... +.....+......-..+.+   ++.+++.|+. + 
T Consensus        85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSD  160 (315)
T ss_dssp             BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTT
T ss_pred             CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCC
Confidence            111111 122222 45566666532        45888887654 2211111111111111222   4567777776 2 


Q ss_pred             ----CcEEEEeCCCCCceEEE-ecCC--CceEEEEEEeCCCcCEEEEeeCCC-----eEEEEECCCCe
Q psy4653         165 ----RTVKVWQLGSASPNFTL-EGHE--KGVNCVDYYHGGDKPYLISGADDR-----LVKIWDYQNKT  220 (229)
Q Consensus       165 ----~~i~~wd~~~~~~~~~~-~~h~--~~v~~~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~  220 (229)
                          ..+.+||..+.+  ++. ..-.  ..-.+....   ++.+++.|+.++     .+.+||..+.+
T Consensus       161 ~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             SCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CcccceEEEEeCCCCe--EEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence                367888876542  111 1111  111122221   334555565443     58889988764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.10  E-value=0.46  Score=37.55  Aligned_cols=115  Identities=10%  Similarity=0.026  Sum_probs=68.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEeccCC-CceeEEEE--cC-CCCEEEEE-eCCCcEEEEecCCceeeeeeeec---
Q psy4653          69 KNWIVTGSDDMQVCVFNYNTLERFHSFEAHS-DYVRCVAV--HP-TQPFLLTS-SDDMLIKLWNWEKAWACQQVFEG---  140 (229)
Q Consensus        69 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~v~~--~~-~~~~~~s~-~~d~~v~lwd~~~~~~~~~~~~~---  140 (229)
                      +..++.++.||.|..+|.++++....++... ..+....-  .+ ++..++.. ..||.|..++..++......-..   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            3478899999999999999999988876541 11111100  01 22233333 57999999998765322111000   


Q ss_pred             ceeeEEE---EEE-cC---CCCCEEEEEECCCcEEEEeCCCCCceEEEec
Q psy4653         141 HTHYVMQ---IVI-NP---KDNNTFASASLDRTVKVWQLGSASPNFTLEG  183 (229)
Q Consensus       141 ~~~~v~~---~~~-~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  183 (229)
                      ...+...   ..+ .+   ..+..+.+|+.++++...|+++++.++++..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            0111110   001 00   0345788899999999999999999888854

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.80  E-value=2.9  Score=32.95  Aligned_cols=100  Identities=12%  Similarity=0.151  Sum_probs=57.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc--eEEEec---cCCCceeEEEEcCC---CC-EEEEEeCC-----CcEE
Q psy4653          59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE--RFHSFE---AHSDYVRCVAVHPT---QP-FLLTSSDD-----MLIK  124 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~---~h~~~i~~v~~~~~---~~-~~~s~~~d-----~~v~  124 (229)
                      .-..+.|.|+|+++++ ..++.|.+++  .++  .+..+.   ........|+|+|+   +. ++++-...     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4678999999986655 5669999988  333  222221   12346789999998   44 44443332     5788


Q ss_pred             EEecCCce-----eeeeeee---cceeeEEEEEEcCCCCCEEEEEE
Q psy4653         125 LWNWEKAW-----ACQQVFE---GHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus       125 lwd~~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      .++.....     .....+.   +..+....+.+.| ++.++++-+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            88775321     1111122   1112235788888 567777643

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.17  E-value=5  Score=30.55  Aligned_cols=184  Identities=11%  Similarity=0.018  Sum_probs=86.5

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE   96 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~   96 (229)
                      +|..++...... ++. . ||.|..|-....-.+..-......|..+....  ...+.-. ||.+..|-.+....+....
T Consensus        64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            455555543332 222 3 78888887654322111001122455554443  2333334 8888888654322211111


Q ss_pred             cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653          97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS  176 (229)
Q Consensus        97 ~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  176 (229)
                      .....|..++.-.....++  . |+.|..|-.....++. +...-...|..++.-.  ...++-  .|+.+..|=.....
T Consensus       138 ~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~--~hs~al--~~G~v~~wG~n~~g  209 (282)
T 3qhy_B          138 EAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGI--FHSLAL--KDGKVIAWGDNRYK  209 (282)
T ss_dssp             GGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEEE--ETTEEEEEECCTTS
T ss_pred             cCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecC--CEEEEE--ECCeEEEEECCCCC
Confidence            1223466665544333333  3 6888888754322211 1111123466666542  334444  59999999654321


Q ss_pred             ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       177 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .+-.-......+..++.  .....+.++   ||.|..|-....
T Consensus       210 qlg~p~~~~~~v~~i~~--G~~h~~al~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          210 QTTVPTEALSGVSAIAS--GEWYSLALK---NGKVIAWGSSRT  247 (282)
T ss_dssp             TTCCCGGGGSSCCEEEE--CSSCEEEEE---TTEEEEESTTCC
T ss_pred             CCCCCcccCCCceEEEc--CCCEEEEEE---CCEEEEecCCCC
Confidence            11100011123555554  333323333   999999976543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.12  E-value=5.9  Score=31.31  Aligned_cols=143  Identities=12%  Similarity=0.093  Sum_probs=79.0

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEE------EecCcCeEEEEEcCC---CCEEEEE---eCCCeEEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSF------EVCDLPVRAAKFVPR---KNWIVTG---SDDMQVCV   83 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~------~~~~~~v~~~~~~~~---~~~l~sg---~~d~~i~i   83 (229)
                      ..-..++|.|++..+++--..|.|++++..+++.....      ...+.....+.++|+   +..|...   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            35678999999985554444899999987766542211      112345789999995   3444332   23445555


Q ss_pred             EECCCc----------ceE-EEec-cCCCceeEEEEcCCCCEEEEEeC-------------CCcEEEEecCCcee-----
Q psy4653          84 FNYNTL----------ERF-HSFE-AHSDYVRCVAVHPTQPFLLTSSD-------------DMLIKLWNWEKAWA-----  133 (229)
Q Consensus        84 wd~~~~----------~~~-~~~~-~h~~~i~~v~~~~~~~~~~s~~~-------------d~~v~lwd~~~~~~-----  133 (229)
                      |.+...          +.+ ..+. .....-..|.|.|++.++++.+.             -++|.-.+.+..-.     
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            554431          111 1221 11123457999999987777543             24555555432100     


Q ss_pred             -eeeee-ecceeeEEEEEEcCCCCCEEEE
Q psy4653         134 -CQQVF-EGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus       134 -~~~~~-~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                       -..++ .+|.. ...++|+| ++.++++
T Consensus       192 ~~~~i~a~G~RN-p~Gla~dp-~G~L~~~  218 (347)
T 3das_A          192 PGSPVYSYGHRN-VQGLAWDD-KQRLFAS  218 (347)
T ss_dssp             TTCCEEEBCCSB-CCEEEECT-TCCEEEE
T ss_pred             CCCeEEeeCCCC-cceEEECC-CCCEEEE
Confidence             01122 24432 35678888 5666654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.27  E-value=6.9  Score=30.91  Aligned_cols=104  Identities=16%  Similarity=0.186  Sum_probs=61.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEe----ccCCCceeEEEEcCC----CCEEEEE--eCCCcEEE
Q psy4653          58 LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER--FHSF----EAHSDYVRCVAVHPT----QPFLLTS--SDDMLIKL  125 (229)
Q Consensus        58 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~----~~h~~~i~~v~~~~~----~~~~~s~--~~d~~v~l  125 (229)
                      ..-..+.|.|+|+++++--..|.|.+++.+.++.  +..+    .........|+++|+    +.++++-  ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4568999999999887765589999988665443  2222    123456789999995    4444432  24556666


Q ss_pred             EecCCce-------eeeeeee----cceeeEEEEEEcCCCCCEEEEEE
Q psy4653         126 WNWEKAW-------ACQQVFE----GHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus       126 wd~~~~~-------~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      |.+....       ....++.    ...+....+.|.| ++.++++-+
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G  158 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG  158 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence            6654310       1111221    1122345678887 677777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.20  E-value=6.1  Score=30.20  Aligned_cols=173  Identities=9%  Similarity=0.031  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCcceEEE--eccCCCce
Q psy4653          38 HVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSD----DM-------QVCVFNYNTLERFHS--FEAHSDYV  102 (229)
Q Consensus        38 ~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~----d~-------~i~iwd~~~~~~~~~--~~~h~~~i  102 (229)
                      .+..||..+.+-.. ....  ...........++..++.|+.    ++       .+..+|+.+.+....  +......-
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            47889998876544 1211  111222233456777777773    12       166778776553221  11111111


Q ss_pred             eEEEEcCCCCEEEEEeCC-------CcEEEEecCCc-eeeeeeeecceeeEEEEEEcCCCCCEEEEEECC------CcEE
Q psy4653         103 RCVAVHPTQPFLLTSSDD-------MLIKLWNWEKA-WACQQVFEGHTHYVMQIVINPKDNNTFASASLD------RTVK  168 (229)
Q Consensus       103 ~~v~~~~~~~~~~s~~~d-------~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~  168 (229)
                      .++.+  ++.+++.|+.+       ..+.+||+... +.....+......-..+..   ++.+++.|+.+      ..+.
T Consensus       104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~  178 (318)
T 2woz_A          104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVF  178 (318)
T ss_dssp             EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEE
T ss_pred             ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEE
Confidence            22222  45666666643       24777887643 2211111111111111222   45677777642      3578


Q ss_pred             EEeCCCCCceEEEecC--CCceEEEEEEeCCCcCEEEEeeCC-----CeEEEEECCCCe
Q psy4653         169 VWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPYLISGADD-----RLVKIWDYQNKT  220 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  220 (229)
                      +||..+.+ -..+...  ...-.+....   ++.+++.|+.+     ..+.+||..+.+
T Consensus       179 ~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          179 IYNPKKGD-WKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEcCCCCE-EEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            88886542 1111111  1111122221   23455555532     357788987764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.09  E-value=7.2  Score=29.64  Aligned_cols=183  Identities=16%  Similarity=0.062  Sum_probs=91.7

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE   96 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~   96 (229)
                      +|..++.....  .++-. ||.|..|-......+..-......|..+.....- .++. . ||.+..|-.+....+..-.
T Consensus        25 ~i~~ia~G~~h--~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFH--GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSE--EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCe--EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            56666665433  23334 9999999876532222111112245555554322 3333 4 8999999765422211101


Q ss_pred             cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653          97 AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS  176 (229)
Q Consensus        97 ~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  176 (229)
                      .-...|..++.-.....++  . |+.|..|-.....++. +.......|..++.-.  ...++ -. |+.+..|-.....
T Consensus        99 ~~~~~v~~ia~G~~hs~al--~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~--~~~~~-l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           99 EARSGVDAIAAGAWASYAL--K-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGV--YTALA-VK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             GGSSSEEEEEEETTEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEE-EE-TTEEEEEECCTTS
T ss_pred             ccCCCeEEEECcCCEEEEE--e-CCeEEEecCCCCCcCC-CCccCCCCeEEEEccc--CEEEE-EE-CCEEEEecCCCCC
Confidence            1123566666655433333  4 8999999764432211 1111223466666542  22333 23 7899999654322


Q ss_pred             ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         177 PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       177 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      .+..-..-...+..++.  .... .++-  .||.|..|-...
T Consensus       171 qlg~p~~~~~~v~~i~~--G~~h-s~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          171 QTTVPAEAQSGVDDVAG--GIFH-SLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             TTSCCGGGGSSEEEEEE--CSSE-EEEE--ETTEEEEEECCT
T ss_pred             CCCCceecCCCeEEEEe--cCCE-EEEE--ECCeEEEEECCC
Confidence            11100011234666654  3332 3333  599999997654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.98  E-value=15  Score=31.98  Aligned_cols=148  Identities=8%  Similarity=-0.016  Sum_probs=76.8

Q ss_pred             CCCeEEEEEec------CeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEe-
Q psy4653          26 TEPWMLASLYN------GHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSF-   95 (229)
Q Consensus        26 ~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~-   95 (229)
                      ++..++.|+.+      +.+.+||..+.+-...-... ...-.++....++++++.|+.++  .+.+||+.+.+....- 
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            66677777643      35778888875432221000 11122333334788888887655  6888998876543211 


Q ss_pred             ----ccCCCceeEEEEcCC-CCEEEEEeC--C-----CcEEEEecCCce-------eeeeeee-cceeeEEEEEEcCCCC
Q psy4653          96 ----EAHSDYVRCVAVHPT-QPFLLTSSD--D-----MLIKLWNWEKAW-------ACQQVFE-GHTHYVMQIVINPKDN  155 (229)
Q Consensus        96 ----~~h~~~i~~v~~~~~-~~~~~s~~~--d-----~~v~lwd~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~  155 (229)
                          ......-.++.+... +.+++.|+.  +     ..+.+||+....       ....... .....-..+.+.  ++
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~  608 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PR  608 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TT
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CC
Confidence                111122234566655 566666665  2     458888986653       1111100 000111122222  25


Q ss_pred             CEEEEEECC--------CcEEEEeCCCC
Q psy4653         156 NTFASASLD--------RTVKVWQLGSA  175 (229)
Q Consensus       156 ~~l~s~~~d--------~~i~~wd~~~~  175 (229)
                      .+++.|+.+        ..+.+||..+.
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            677777743        46888888754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=86.51  E-value=11  Score=29.93  Aligned_cols=154  Identities=11%  Similarity=0.182  Sum_probs=84.1

Q ss_pred             ceEEEEEcc--CCC-eEEEEE-e--cCeEEEEEcCCC-CeEE---EEEecC-cCeEEEEEcCCCCEEEEEeC---C----
Q psy4653          17 RVKCCDLHP--TEP-WMLASL-Y--NGHVHVWNHETN-QNVK---SFEVCD-LPVRAAKFVPRKNWIVTGSD---D----   78 (229)
Q Consensus        17 ~v~~~~~~p--~~~-~l~~~~-~--dg~v~~wd~~~~-~~~~---~~~~~~-~~v~~~~~~~~~~~l~sg~~---d----   78 (229)
                      .-..+++.+  ++. .|++.. .  +.+|.+|++... ....   .+.... ...+.+.+.++|.+.++...   |    
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            345556555  343 455543 2  467888877653 2222   222111 24678888999987776541   1    


Q ss_pred             --------CeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEE-eCCCcEEEEecCCcee--eeeeeecceeeEEE
Q psy4653          79 --------MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDMLIKLWNWEKAWA--CQQVFEGHTHYVMQ  147 (229)
Q Consensus        79 --------~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~-~~d~~v~lwd~~~~~~--~~~~~~~~~~~v~~  147 (229)
                              ..=.+|.+..++ +..+...-..-+.++|+|+++.+..+ +..+.|..|++.....  ..+.+. ..+..-.
T Consensus       193 ~~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDG  270 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDN  270 (355)
T ss_dssp             HHHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEE
T ss_pred             cchhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCce
Confidence                    122344333332 22222223456899999999876544 5678999999864222  123342 1334556


Q ss_pred             EEEcCCCCCEEEEEECC-CcEEEEeC
Q psy4653         148 IVINPKDNNTFASASLD-RTVKVWQL  172 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d-~~i~~wd~  172 (229)
                      +.+.+.++.+.+++..+ +.|..|+.
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             EEEeCCCCcEEEEecCCceEEEEECC
Confidence            67765236777766645 34444444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.08  E-value=6.8  Score=35.51  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             eEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       188 v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +.++..  .++..+++|-+.|+++|+|++.+++|+.+.+
T Consensus       238 ~~~~~~--~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          238 IISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             EEEEEE--ETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEEee--cCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            444443  3456699999999999999999999998864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=85.91  E-value=11  Score=29.60  Aligned_cols=101  Identities=13%  Similarity=0.095  Sum_probs=57.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEec---cCCCceeEEEEcCC----CCEEEEEeC---C----CcE
Q psy4653          59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-RFHSFE---AHSDYVRCVAVHPT----QPFLLTSSD---D----MLI  123 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~---~h~~~i~~v~~~~~----~~~~~s~~~---d----~~v  123 (229)
                      .-..+.|.|+|+++++ ..+|.|.+++. .++ .+..+.   ........|+++|+    +.++++-+.   +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4678999999985555 56699998874 333 222221   12346789999997    444444332   3    567


Q ss_pred             EEEecCCce----eeeee---ee-cceeeEEEEEEcCCCCCEEEEEE
Q psy4653         124 KLWNWEKAW----ACQQV---FE-GHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus       124 ~lwd~~~~~----~~~~~---~~-~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                      ..++.....    ....+   +. +..+....+.|.| ++.++++-+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G  153 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG  153 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence            777765430    01111   11 1112235678888 677777644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=83.87  E-value=13  Score=28.75  Aligned_cols=94  Identities=10%  Similarity=-0.018  Sum_probs=45.7

Q ss_pred             CCCeEEEEEe-cCeEEEEEcCC--CCeEEEEEec--CcCeEEEEEcCCCCEEEEEeC-C---------CeEEEEECCCcc
Q psy4653          26 TEPWMLASLY-NGHVHVWNHET--NQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSD-D---------MQVCVFNYNTLE   90 (229)
Q Consensus        26 ~~~~l~~~~~-dg~v~~wd~~~--~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~-d---------~~i~iwd~~~~~   90 (229)
                      ++.+++.|+. ...+.++|..+  .+-...-...  ...-.++... ++++++.|+. +         ..+.+||+.+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            6666677764 45788899874  3222111101  1111122222 4666666665 2         357888888765


Q ss_pred             eEEEeccC-CCceeEEEEcCCCCEEEEEeCC
Q psy4653          91 RFHSFEAH-SDYVRCVAVHPTQPFLLTSSDD  120 (229)
Q Consensus        91 ~~~~~~~h-~~~i~~v~~~~~~~~~~s~~~d  120 (229)
                      ....-... ..+...-+...++.+++.|+.+
T Consensus        98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            33211111 2222221222556777777754

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.47  E-value=2.5  Score=36.83  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=25.9

Q ss_pred             cCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         199 KPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       199 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ..+|++-+.|+++|+||+++++++.+.+-
T Consensus       231 ~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          231 ERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            45999999999999999999999988653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.24  E-value=18  Score=29.67  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEecc------CCCceeEEEEcCC----CCEEEEEeC------
Q psy4653          58 LPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER--FHSFEA------HSDYVRCVAVHPT----QPFLLTSSD------  119 (229)
Q Consensus        58 ~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~------h~~~i~~v~~~~~----~~~~~s~~~------  119 (229)
                      ..-..+.|.|+|+++++-...+.|.+++..+++.  +..+..      .......|+|+|+    +.++++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3567999999999887755445788887654432  222221      2456779999995    444444332      


Q ss_pred             ------CCcEEEEecCCc----eeeeeeee----cceeeEEEEEEcCCCCCEEEEEE
Q psy4653         120 ------DMLIKLWNWEKA----WACQQVFE----GHTHYVMQIVINPKDNNTFASAS  162 (229)
Q Consensus       120 ------d~~v~lwd~~~~----~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~  162 (229)
                            ...|.-++....    .....++.    ...+....+.|.| ++.++++-+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence                  234555554321    11112221    1123467888988 677777654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=83.15  E-value=23  Score=30.88  Aligned_cols=190  Identities=9%  Similarity=0.129  Sum_probs=100.3

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ..|.++.-..++ .|..|+.+ -+..+|..+.+...........|.++.. .++ .|-.|+.+ -+..+|.++.+. ..+
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~~  136 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TSF  136 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EEE
T ss_pred             ceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EEe
Confidence            468888777666 45666654 4778998875432211111224666644 344 45555555 577888776543 222


Q ss_pred             c-----cCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec----ceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          96 E-----AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG----HTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        96 ~-----~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      .     .....|.++...+++.+.+ ++.. -+..++.............    ....|.++...+ ++..|..|.. +-
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~G  212 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GY  212 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EE
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CC
Confidence            1     1234688888888777655 4443 5777886543211111111    112366676654 3444444543 45


Q ss_pred             EEEEeCCCCCceEEEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         167 VKVWQLGSASPNFTLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      +..+|..+.+.. .+.. ....|.++..  ..++. |..|+. +-+.+++..+++
T Consensus       213 l~~~~~~~~~~~-~~~~l~~~~i~~i~~--d~~g~-lWigT~-~Gl~~~~~~~~~  262 (758)
T 3ott_A          213 LFQYFPSTGQIK-QTEAFHNNSIKSLAL--DGNGD-LLAGTD-NGLYVYHNDTTP  262 (758)
T ss_dssp             EEEEETTTTEEE-EEEEEEEEEEEEEEE--CTTCC-EEEEET-TEEEEECCTTSC
T ss_pred             CeEEcCCCCeEE-eccCCCCCeEEEEEE--cCCCC-EEEEeC-CceeEEecCCCc
Confidence            788887654321 1111 1123555543  33443 445554 457788876654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=81.81  E-value=19  Score=30.65  Aligned_cols=71  Identities=10%  Similarity=0.005  Sum_probs=48.5

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCeEEEEECCCcce-------------EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEE
Q psy4653          59 PVRAAKFVPRKNWIVTGS-DDMQVCVFNYNTLER-------------FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK  124 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~-~d~~i~iwd~~~~~~-------------~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~  124 (229)
                      .-..+..+|+|+++++++ .+.++.++|++....             ....+.- -.-...+|.++|.-..|---|.+|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEE
Confidence            456788899999876654 567899999874211             1112211 2235789999995555666899999


Q ss_pred             EEecCC
Q psy4653         125 LWNWEK  130 (229)
Q Consensus       125 lwd~~~  130 (229)
                      -|+++.
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.72  E-value=2.8  Score=37.94  Aligned_cols=38  Identities=18%  Similarity=0.134  Sum_probs=33.5

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE   54 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~   54 (229)
                      .+.++...++..++++-+.|+++++|++.+++++....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56778888899999999999999999999999877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (251), Expect = 5e-26
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 2/196 (1%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
            C     +  ++ S  +    +W+ ET Q   +F      V +    P     V+G+ D 
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
              +++        +F  H   +  +   P      T SDD   +L++            
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK 199
            +    +  V   K      +   D    VW    A     L GH+  V+C+      D 
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD--DG 324

Query: 200 PYLISGADDRLVKIWD 215
             + +G+ D  +KIW+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 2e-18
 Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 47/270 (17%)

Query: 2   PLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVR 61
            +++  +R L     ++           ++++  +G + +W+  T   V +  +    V 
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101

Query: 62  AAKFVPRKNWIVTGSD-------------------------------------------- 77
              + P  N++  G                                              
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 78  -DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ 136
            D    +++  T ++  +F  H+  V  +++ P     ++ + D   KLW+  +   C+Q
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220

Query: 137 VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG 196
            F GH   +  I   P + N FA+ S D T +++ L +     T                
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 197 GDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                L++G DD    +WD         L 
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (186), Expect = 5e-17
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL--PVRAAKF 65
           ++  T     +      P          +    +++   +Q + ++   ++   + +  F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
                 ++ G DD    V++    +R      H + V C+ V      + T S D  +K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 126 WN 127
           WN
Sbjct: 339 WN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.0 bits (237), Expect = 3e-24
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 24/216 (11%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
              + P    ++++  +  + +W  +T   VK+F      VR  +       I + S+D 
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVH--------------------PTQPFLLTSSD 119
            V V+   T E       H   V C++                         PFLL+ S 
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 120 DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF 179
           D  IK+W+      C     GH ++V  ++ +        S + D+T++VW   +     
Sbjct: 226 DKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMK 283

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
           TL  HE  V  +D++     PY+++G+ D+ VK+W+
Sbjct: 284 TLNAHEHFVTSLDFHK--TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.8 bits (234), Expect = 9e-24
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 22/240 (9%)

Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
           D +R L   +D V+      +   + +   +  + +W+ +  + +++    D  V +   
Sbjct: 50  DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 109

Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
           +P  + IV+ S D  + ++   T     +F  H ++VR V  +     + + S+D  +++
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 126 WNWEKAWACQQVFEGHTHYVMQI-------------------VINPKDNNTFASASLDRT 166
           W       C+     H H V  I                     + K      S S D+T
Sbjct: 170 WVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 167 VKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           +K+W + +     TL GH+  V  V ++ GG   +++S ADD+ +++WDY+NK C++TL 
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.5 bits (228), Expect = 6e-23
 Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 20/241 (8%)

Query: 4   RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA 63
           R   K  L+     V     HP    M+++  +  + VW++ET    ++ +     V+  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 64  KFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI 123
            F      + + S DM + ++++   E   +   H   V  V++ P    ++++S D  I
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
           K+W  +    C + F GH  +V  +  N  D    AS S D+TV+VW + +      L  
Sbjct: 126 KMWEVQT-GYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 184 HEKGVNCVDYYHGG------------------DKPYLISGADDRLVKIWDYQNKTCVQTL 225
           H   V C+ +                        P+L+SG+ D+ +K+WD     C+ TL
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243

Query: 226 E 226
            
Sbjct: 244 V 244

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (201), Expect = 3e-19
 Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 22/182 (12%)

Query: 10  KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
             T   + V+    +     + +   +  V VW   T +           V    + P  
Sbjct: 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197

Query: 70  NW--------------------IVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP 109
           ++                    +++GS D  + +++ +T     +   H ++VR V  H 
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257

Query: 110 TQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV 169
              F+L+ +DD  +++W+++    C +    H H+V  +  +        + S+D+TVKV
Sbjct: 258 GGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKV 315

Query: 170 WQ 171
           W+
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (189), Expect = 2e-17
 Identities = 24/121 (19%), Positives = 52/121 (42%)

Query: 6   DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF 65
           +      + +   +        P++L+   +  + +W+  T   + +    D  VR   F
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 66  VPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKL 125
                +I++ +DD  + V++Y       +  AH  +V  +  H T P+++T S D  +K+
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 126 W 126
           W
Sbjct: 316 W 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
            W      +    GH   V +++ +P   +   SAS D T+KVW   +     TL+GH  
Sbjct: 2   EWIPRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

Query: 187 GVNCVDYYH 195
            V  + + H
Sbjct: 61  SVQDISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES 227
           K W +      + L GH   V  V ++       ++S ++D  +K+WDY+     +TL+ 
Sbjct: 1   KEW-IPRPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKG 57

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.8 bits (226), Expect = 2e-22
 Identities = 50/220 (22%), Positives = 82/220 (37%), Gaps = 23/220 (10%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
             D  P+   +++   +  V +W+  T Q   +  + D     A       +I  GS D 
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR 227

Query: 80  QVCVFNYNTLERFH-------SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA- 131
            V V++  T            S   H D V  V        +++ S D  +KLWN + A 
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287

Query: 132 ----------WACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
                       C+  + GH  +V+ +     ++    S S DR V  W   S +P   L
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLML 346

Query: 182 EGHEKGVNCVDYYHGG----DKPYLISGADDRLVKIWDYQ 217
           +GH   V  V   +G     +     +G+ D   +IW Y+
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 4e-15
 Identities = 44/234 (18%), Positives = 91/234 (38%), Gaps = 21/234 (8%)

Query: 11  LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
             +    ++     P   ++     +  + +W+ E  + V   +  +  + +  + P  +
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176

Query: 71  WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
            +V+GS D  V +++  T +   +                  ++   S D  +++W+ E 
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236

Query: 131 AWACQ------QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF----- 179
            +  +      +   GH   V  +V    D  +  S SLDR+VK+W L +A+        
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 180 -------TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                  T  GH+  V  V      +  Y++SG+ DR V  WD ++   +  L+
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQ 347

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.4 bits (168), Expect = 2e-14
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 18/141 (12%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK------------SFEV 55
               T   D V           +++   +  V +WN +   N              ++  
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306

Query: 56  CDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV------HP 109
               V +        +I++GS D  V  ++  +       + H + V  VAV       P
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 110 TQPFLLTSSDDMLIKLWNWEK 130
                 T S D   ++W ++K
Sbjct: 367 EYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 6e-08
 Identities = 52/286 (18%), Positives = 87/286 (30%), Gaps = 73/286 (25%)

Query: 8   KRKLTARSDRVKCCDLHPTE-PWMLASLYNGHVHVWNHETNQNVKSFEVCDL----PVRA 62
           +R   ++       DL     P  L    N +  ++N    + +       L     V  
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 63  AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE------------------AHSDYVRC 104
            KF     ++ TG +     V+  +                           +   Y+R 
Sbjct: 68  VKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 126

Query: 105 VAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-------------------- 144
           V   P   FL T ++D LI++W+ E       +                           
Sbjct: 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 145 --------------------VMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE-- 182
                               V  + ++P D    A+ SLDR V+VW   +      L+  
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246

Query: 183 -----GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
                GH+  V  V +   G    ++SG+ DR VK+W+ QN     
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNKS 290

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 15  SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRA------AKFVPR 68
            D V        + ++L+   +  V  W+ ++   +   +     V +      +   P 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 69  KNWIVTGSDDMQVCVFNYNTL 89
            N   TGS D +  ++ Y  +
Sbjct: 368 YNVFATGSGDCKARIWKYKKI 388

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 4e-13
 Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 16/207 (7%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
              +      +++  Y+  V VW+ ET   + + +     V + +F      +V+GS D 
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDT 197

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
            + V++  T    H+   H      + +      L++ + D  +K+W+ +     Q +  
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-----EGHEKGVNCVDYY 194
            + H    +     + N   ++S D TVK+W L +      L      G    V  +   
Sbjct: 256 PNKH-QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 195 HGGDKPYLISGADD----RLVKIWDYQ 217
           +         G+ +      + + D+ 
Sbjct: 315 NTKL--VCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 1e-12
 Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 14/216 (6%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
            R L   +  V    +            +    +             +            
Sbjct: 50  LRTLVGHTGGVWSSQMRDNIIIS----GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
            +  +V+GS D  + V++  T +  H    H   VRCV        +++ + D ++K+W+
Sbjct: 106 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWD 163

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
            E    C    +GHT+ V        D     S SLD +++VW + + +   TL GH+  
Sbjct: 164 PET-ETCLHTLQGHTNRVYS---LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 219

Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
            + ++         L+SG  D  VKIWD +   C+Q
Sbjct: 220 TSGMEL----KDNILVSGNADSTVKIWDIKTGQCLQ 251

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 2e-12
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
              +H  E  +++   +  + VW+ ET Q +         VR          +V+G+ D 
Sbjct: 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDF 157

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
            V V++  T    H+ + H++ V  +        +++ S D  I++W+ E    C     
Sbjct: 158 MVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVET-GNCIHTLT 214

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK 199
           GH      + +     N   S + D TVK+W + +     TL+G  K  + V      +K
Sbjct: 215 GHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NK 270

Query: 200 PYLISGADDRLVKIWDYQNKTCVQTLES 227
            ++I+ +DD  VK+WD +    ++ L +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVT 298

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-11
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 13/221 (5%)

Query: 4   RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA 63
            L   + L    D V  C L      +++   +  + VW+  T + +++       V ++
Sbjct: 5   ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63

Query: 64  KFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI 123
           +     N I++GS D  + V+N  T E  H+   H+  VRC+ +H  +    + S D  +
Sbjct: 64  QMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATL 119

Query: 124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG 183
           ++W+ E      Q       +V  +     D     S + D  VKVW   + +   TL+G
Sbjct: 120 RVWDIE----TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175

Query: 184 HEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           H        Y    D  +++SG+ D  +++WD +   C+ T
Sbjct: 176 H----TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.1 bits (154), Expect = 1e-12
 Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 4/170 (2%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNT--LERFHSFEAHSDYVRCVAVHPTQPFLLT 116
           P+    +   +  I    ++ +V ++  +     + H  + H+  V  V   P    ++T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 117 SSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS 176
              D    +W  +       +     +   + V    +   FA  S  R + +      +
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 177 PNFTLEGHEKGVNC--VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
             +  +  +K +    +      +   L +G+ D   +I+    K   + 
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.6 bits (145), Expect = 1e-11
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 4/131 (3%)

Query: 92  FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE-KAWACQQVFEGHTHYVMQIVI 150
           +HSF    + + C A +  +  +    ++  + ++      W      + H   V  +  
Sbjct: 2   YHSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59

Query: 151 NPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL 210
            P D+N   +   DR   VW L   +   TL                ++     G+  R+
Sbjct: 60  AP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118

Query: 211 VKIWDYQNKTC 221
           + I  ++ +  
Sbjct: 119 ISICYFEQEND 129

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 10  KLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRK 69
           + ++    V           +    ++  V + + +    V +     LP+ A  F+   
Sbjct: 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 255

Query: 70  NWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
           + +  G D     +F Y++     SF    D  +  +           + D         
Sbjct: 256 SLVAAGHDC-FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314

Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNN---TFASASLDRTVKVWQLGS 174
            A A   +   H + V QI +          F +  +D  + +W + S
Sbjct: 315 AAGAG--LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 1e-08
 Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 12/197 (6%)

Query: 35  YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHS 94
                        + +         V    F    + +   S D  VC+ + +      +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238

Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD 154
             + +  +  V        +    D     L+ ++ A A +  F G      Q       
Sbjct: 239 LASETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSA-AGKLSFGGRLDVPKQSSQRG-L 295

Query: 155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG--DKPYLISGADDRLVK 212
                  +LD+        +A        H+  V+ +    GG        +   D  + 
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAG-LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354

Query: 213 IWDYQNKTCVQTLESGI 229
           IWD      V++LES +
Sbjct: 355 IWD------VRSLESAL 365

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 8e-08
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 6/161 (3%)

Query: 16  DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN--VKSFEVCDLPVRAAKFVPRKNWIV 73
           + + C   +     +     N  VH++    N+   V   +  +  V    + P  N IV
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 74  TGSDDMQVCVFNYNTL--ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA 131
           T   D    V+       +        +   RCV   P +      S   +I +  +E+ 
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127

Query: 132 WACQQVFEGHTHYVMQI--VINPKDNNTFASASLDRTVKVW 170
                           +  +    ++   A+ S D   +++
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 60.3 bits (144), Expect = 2e-11
 Identities = 17/220 (7%), Positives = 44/220 (20%), Gaps = 21/220 (9%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
                P +           +HV++ E  +   +         A  F      +   S   
Sbjct: 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS-HDYAPAFDADSKNLYYLSYRS 200

Query: 80  QVCVFNYNTLE-------RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW 132
                +   L        +               + P          D+           
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 133 A------CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEK 186
                       E         V        +  A     +  + + +      +   + 
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTR----KVTEVKN 315

Query: 187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            +  +          ++   DD  +  +  +     +T+E
Sbjct: 316 NLTDLRLSADRK--TVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 8e-06
 Identities = 28/227 (12%), Positives = 58/227 (25%), Gaps = 18/227 (7%)

Query: 16  DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG 75
           +       +     M   L  G   V        +  F + D     A   P K+    G
Sbjct: 96  NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155

Query: 76  SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN------WE 129
                + V++    + F +    + +    A       L   S   L    +        
Sbjct: 156 YVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214

Query: 130 KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ-------LGSASPNFTLE 182
           +  +   V            + P  + T  +   D      +        G       LE
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVP-RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273

Query: 183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
                 +     HG    Y     +  ++  +D + +  V  +++ +
Sbjct: 274 SSILIYSV--PVHGEFAAYYQGAPEKGVLLKYDVKTRK-VTEVKNNL 317

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 23/217 (10%), Positives = 51/217 (23%), Gaps = 14/217 (6%)

Query: 22  DLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV 81
           D  P +  ++A +  G   + +      +K  E   L +R  +                 
Sbjct: 9   DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 82  CVFNYNTL-ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG 140
            +  Y+    +   FE +   V  + V     F + ++D   I   + E           
Sbjct: 67  FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126

Query: 141 --------HTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVD 192
                    +     I       +      + + + V+ +           +        
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186

Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
                    L   +   L    D         + S  
Sbjct: 187 DADS---KNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 7e-11
 Identities = 43/206 (20%), Positives = 75/206 (36%), Gaps = 20/206 (9%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-PRKNWIVTGSDD 78
              L      M+    +  + VW+  +  ++    V      A   V     +IV+ S D
Sbjct: 98  VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD 157

Query: 79  MQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF 138
             + V+N +T E   +   H   + C+        +++ S D  I+LW+ E    C    
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIE----CGACL 211

Query: 139 EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSA---------SPNFTLEGHEKGVN 189
                +   +     DN    S + D  +KVW L +A             TL  H   V 
Sbjct: 212 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271

Query: 190 CVDYYHGGDKPYLISGADDRLVKIWD 215
            + +    D+  ++S + D  + IWD
Sbjct: 272 RLQF----DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 1e-10
 Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 10/217 (4%)

Query: 9   RKLTARSDRVKC-CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           +++  RS+  K    L   +  +++ L +  + +W+  T +  +        V   ++  
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-- 63

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
             +  V  +      V  ++                 + +      ++T S D  I +W+
Sbjct: 64  --DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
                          H     V++  D+    SAS DRT+KVW   +     TL GH++G
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT 224
           + C+ Y        ++SG+ D  +++WD +   C++ 
Sbjct: 181 IACLQY----RDRLVVSGSSDNTIRLWDIECGACLRV 213

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 4e-06
 Identities = 34/222 (15%), Positives = 61/222 (27%), Gaps = 11/222 (4%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           KR LT  +  V C           +S     V   N     N        +         
Sbjct: 48  KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 107

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
                   S  +       +   R       +             +++++S D  IK+WN
Sbjct: 108 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV---DFDDKYIVSASGDRTIKVWN 164

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKG 187
                   +   GH   +         +    S S D T+++W +             +G
Sbjct: 165 TST-CEFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDI----ECGACLRVLEG 216

Query: 188 VNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
              +      D   ++SGA D  +K+WD       +     +
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 87  NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
           ++L+R H     S  V C+        +++   D  IK+W+      C+++  GHT  V+
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVL 59

Query: 147 QIVINP 152
            +  + 
Sbjct: 60  CLQYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
                 KGV C+ Y    D   ++SG  D  +KIWD     C + L 
Sbjct: 10  CRSETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILT 52

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 1/159 (0%)

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
                N+++TG+DD  + V++    +       H   V  +        L++ S D  ++
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 77

Query: 125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGH 184
           +W+ +K          ++      ++  K+     + S D T+ VW+L   S        
Sbjct: 78  VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137

Query: 185 EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQ 223
                             +       V+         V 
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-08
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
            +   H   V    +     +++T +DD +I++++            GH   V  +    
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAH 63

Query: 153 KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK 212
                  S S DRTV+VW +         EGH   V C+D     +  Y+++G+ D  + 
Sbjct: 64  --GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 213 IWDYQNKTCVQTL 225
           +W    ++ V   
Sbjct: 122 VWKLPKESSVPDH 134

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 12/165 (7%), Positives = 35/165 (21%), Gaps = 4/165 (2%)

Query: 8   KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVP 67
           K          +                +    +   +       + +            
Sbjct: 192 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251

Query: 68  RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
              ++V+ + D  +  ++ N       F  H   +  +        +L S  +    ++N
Sbjct: 252 SDKFLVSAAADGSIRGWDAND--YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYN 309

Query: 128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
                            +  +          A+   D    +  L
Sbjct: 310 LRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 5e-06
 Identities = 19/198 (9%), Positives = 58/198 (29%), Gaps = 10/198 (5%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
              +      +++  Y+  + VW+    + +         + +  +   +   ++ S D 
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 223

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
            + +++    E  ++ + H+  V  + +                       A    + F 
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLV-----SAAADGSIRGWDANDYSRKFS 278

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP-NFTLEGHEKGVNCVDYYHGGD 198
            H   +  I      +N   S S +    ++ L S    +  +      +  V++     
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT- 336

Query: 199 KPYLISGADDRLVKIWDY 216
              + +   D    +   
Sbjct: 337 --LVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 3/111 (2%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
              L       L S             + + K             F    N +V+GS++ 
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN- 303

Query: 80  QVCVFNYNTLERFHS-FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE 129
           Q  ++N  + +  H+     +D +  V        +     D    L   +
Sbjct: 304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 179 FTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            TL GH   V     +      Y+I+GADD++++++D  NK  +  L 
Sbjct: 6   TTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQLS 50

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 21/211 (9%), Positives = 63/211 (29%), Gaps = 8/211 (3%)

Query: 18  VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD 77
           +    L            + +  V++           +              N +V+GS 
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 78  DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV 137
           D  + V++   ++  +    H+D +        +   +++S D  I++W+ E       +
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239

Query: 138 FEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG 197
                   +  + +    +  A  S+              +     H   ++ +  ++  
Sbjct: 240 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY------SRKFSYHHTNLSAITTFYVS 293

Query: 198 DKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           D   ++    +    I++ ++   V      
Sbjct: 294 DN--ILVSGSENQFNIYNLRSGKLVHANILK 322

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 6e-10
 Identities = 16/160 (10%), Positives = 44/160 (27%), Gaps = 26/160 (16%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNW---EKAWACQQVFEGHTH------ 143
           ++ +AH   +  V+      F ++ S D  +K+W+    +      + +    H      
Sbjct: 8   NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 144 --YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGG---- 197
              +  I  +  +    A+ S    +  +++        +   +  +   D         
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 198 ---------DKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                        L++        IW +          + 
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 1e-08
 Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 14/104 (13%)

Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE------GHEK 186
           A     + H   +  +       +   S S D  +KVW           +       H+ 
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 187 GVNCVDYY-----HGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
           G++ VD          +   + + +    +  +    +   + +
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV 105

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 28/278 (10%), Positives = 67/278 (24%), Gaps = 57/278 (20%)

Query: 3   LRLDIKRKLTARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVR 61
               + +      D ++  +    E  ++A+  ++G +  +        K      L + 
Sbjct: 54  YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

Query: 62  AAKFVPRKNW---------------IVTGSDDMQVCVFNYNTLER--------------- 91
            +       W               +V         ++ ++                   
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173

Query: 92  ---FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQI 148
                S    S +   V +      + T  ++  +++               H+      
Sbjct: 174 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232

Query: 149 VINPKDNN----TFASASLDRTVKVWQ----------------LGSASPNFTLEGHEKGV 188
            I     +      A A    +                       S+  +     H   V
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 292

Query: 189 NCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             + +   G+   L S   D  ++ WD + K  + TL 
Sbjct: 293 MSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 21/148 (14%)

Query: 28  PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN 87
            +                ++Q           V +  F      + +   D ++  ++  
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319

Query: 88  TLERFHSFEAHSDYVRC----VAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH 143
           T ER  +   H D +      +AV      L       +  +   +K W           
Sbjct: 320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGW----------- 365

Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQ 171
              +  +    N +     LDR+++ ++
Sbjct: 366 ---RSGMGADLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 23/175 (13%)

Query: 38  HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH---- 93
                  E    V+S         +      +  I TG ++  V +   +TL   +    
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFES 223

Query: 94  --SFEAHSDYVRCVAVHPTQPFLLTSSDD---------------MLIKLWNWEKAWACQQ 136
             S   +S+ +R V   P    L  + D                 +  L     +     
Sbjct: 224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 283

Query: 137 VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
               H+ +VM +  N     T  SA  D  ++ W + +     TL  H   +   
Sbjct: 284 GEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE 337

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 17/170 (10%)

Query: 38  HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY----------- 86
              +      ++  S       +R+ KF P+ + +    D                    
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 87  -----NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH 141
                ++ +      AHS +V  ++ + +   L ++  D  ++ W+ +           H
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMH 330

Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCV 191
              +         +    S +      V  L     +       + + CV
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 380

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 8e-06
 Identities = 20/207 (9%), Positives = 57/207 (27%), Gaps = 49/207 (23%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE------AHSDYVRCVAV----- 107
            + +       ++ V+ S D  + V++   L+  +  +       H   +  V V     
Sbjct: 16  DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73

Query: 108 --HPTQPFLLTSSDDMLIKLWNWEKAWACQQVF---------EGHTHYVMQIVINPKDN- 155
                   + T+S    +  +   +    ++V          +   H    +     ++ 
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133

Query: 156 ---NTFASASLDRTVKVWQLGSASPN------------------FTLEGHEKGVNCVDYY 194
              +   +  +  T  +W+    +                     +     +    VD  
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 195 HGGDKPYLISGADDRLVKIWDYQNKTC 221
             G    + +G ++  V+I +      
Sbjct: 194 ERG---LIATGFNNGTVQISELSTLRP 217

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESGI 229
             + H+  +  V         + +S + D  +K+WD +        +   
Sbjct: 9   AGKAHDADIFSVSA----CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSY 54

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 7e-10
 Identities = 25/196 (12%), Positives = 58/196 (29%), Gaps = 7/196 (3%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
              + P      +   +G++ VW+      V+ F+                 + TG  D 
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
            V  ++     +    +  +  +  +   PT  +   +       +         +    
Sbjct: 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEW--LAVGMESSNVEVLHVNKPDKYQLH 262

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDK 199
            H   V+ +         F S   D  +  W+    +  F        V   D     D 
Sbjct: 263 LHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV--DD 318

Query: 200 PYLISGADDRLVKIWD 215
            Y+++G+ D+   +++
Sbjct: 319 KYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-09
 Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 4/153 (2%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
            C     +   L +    +                     + +  + P   W+  G +  
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS 246

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
            V V + N     +    H   V  +       + +++  D L+  W      +  Q   
Sbjct: 247 NVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-- 303

Query: 140 GHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
             +  V+   I+  D+    + S D+   V+++
Sbjct: 304 KESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 5e-09
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 16  DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG 75
            ++      PT  W+   + + +V    H    +     + +  V + KF     W V+ 
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVE-VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283

Query: 76  SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN 127
             D  +  +           +  S  V    +     +++T S D    ++ 
Sbjct: 284 GKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 21/216 (9%), Positives = 57/216 (26%), Gaps = 4/216 (1%)

Query: 11  LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKN 70
              R + ++ C L P    ++       + +W+          E+              +
Sbjct: 93  CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152

Query: 71  WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
             V  S      +  ++   +    +          +  +       +  +   + +W+ 
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212

Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNC 190
               Q      T  +  +   P           + +       +    + L  HE  V  
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLS 270

Query: 191 VDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
           + + + G   + +S   D L+  W       +   +
Sbjct: 271 LKFAYCGK--WFVSTGKDNLLNAWRTPYGASIFQSK 304

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 16/118 (13%)

Query: 67  PRKNWIVTGSDDMQVCVFNYNTL---------ERFHSFEAHSDYVRCVAVHPTQPFLLTS 117
           P  ++ VT    MQ   F  + L          + ++   H + V  V +      + T 
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTG 69

Query: 118 SDDMLIKLWNWEKAWA----CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171
                +K+W+           Q       +Y+    + P D  T        T+ +W 
Sbjct: 70  GKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWD 125

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 9/93 (9%), Positives = 22/93 (23%), Gaps = 4/93 (4%)

Query: 59  PVRAAKFVPRKNWIVTGSDDM----QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL 114
            V A         + TG         +      +           +Y+R   + P    L
Sbjct: 53  VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112

Query: 115 LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQ 147
           +   +   + +W+        +     +     
Sbjct: 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACY 145

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 2e-09
 Identities = 22/225 (9%), Positives = 62/225 (27%), Gaps = 11/225 (4%)

Query: 1   MPLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGH--VHVWNHETNQNVKSFEVCDL 58
             + +++K +    +  +           +              + ++  ++        
Sbjct: 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVC----VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL 114
            + A      +        D           +       +      +VR V   P     
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220

Query: 115 LTSSDDMLIK--LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
           + +                +      +          ++  D+  FA+   D T++VW +
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280

Query: 173 GSASP--NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
            ++     +TL+  + G   V     G+   +IS + D  +  ++
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 2e-06
 Identities = 18/155 (11%), Positives = 36/155 (23%), Gaps = 3/155 (1%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
                          Y G    ++     + K          +         + +     
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE 139
                +   L+     +                   T   D  I++W+      C Q + 
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT-SKCVQKWT 290

Query: 140 GHTH--YVMQIVINPKDNNTFASASLDRTVKVWQL 172
                    Q+ +    N    S SLD T+  ++L
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 16/229 (6%)

Query: 14  RSDRVKCCDLHPTEP--WMLASLYNGHVHVWNHETNQNVKSFEVCDL--------PVRAA 63
            S  V      P +   ++ +   +G V VW    ++   S EV           P+   
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 64  KFVP--RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
            +    R+  +V    D      ++++         HS  +    +  ++P    +  D 
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 122 LIKLWNW---EKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN 178
              ++      K  A  +       +V  +  +P       +   DR +  +   S    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 179 FTLEGHEKGVNCVDYY-HGGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
             +E  ++ V    +     D     +   D  +++WD     CVQ   
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (127), Expect = 6e-09
 Identities = 21/174 (12%), Positives = 50/174 (28%), Gaps = 15/174 (8%)

Query: 67  PRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
               + VT  D  Q+ + + +T E     +     V    +  +  +L     D  + + 
Sbjct: 30  LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMI 88

Query: 127 NWE----KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE 182
           +         A  ++           +   +D    A A       +    +  P     
Sbjct: 89  DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

Query: 183 GHEKGVNCVDYYHGG---------DKPYLI-SGADDRLVKIWDYQNKTCVQTLE 226
                 +  +Y+             +P  I +  +   + + DY +   ++T E
Sbjct: 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 202

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 11/141 (7%), Positives = 35/141 (24%), Gaps = 8/141 (5%)

Query: 36  NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF 95
            G + + +  T +     +        ++      ++     D +V + +    E     
Sbjct: 41  AGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99

Query: 96  E-----AHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIV 149
           E                     + +  +       + + E     +++         +  
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQE 158

Query: 150 INPKDNNTFASASLDRTVKVW 170
            +P+       AS  R   + 
Sbjct: 159 YHPEPRVAAILASHYRPEFIV 179

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 9e-09
 Identities = 9/79 (11%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 95  FEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV--FEGHTHYVMQIVINP 152
            +A  DY+  + + P++  LL +S D  + ++ ++       +     + H ++      
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 153 KDNNTFASASLDRTVKVWQ 171
             +      ++   +    
Sbjct: 67  NTDLQIYVGTVQGEILKVD 85

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 25/192 (13%), Positives = 54/192 (28%), Gaps = 26/192 (13%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVTG 75
              +      ++  + N  V  +     ++                 A     +      
Sbjct: 153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212

Query: 76  SDDMQVCVFNYNTLER---------------FHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
           S D +V V  ++                          +  V  +   P   FL T+  D
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272

Query: 121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT 180
            +I  WN +     +   + +   V++I      +N    A+ D T K       + + T
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIAC---SDNILCLATSDDTFKTNA----AIDQT 325

Query: 181 LEGHEKGVNCVD 192
           +E +   +  + 
Sbjct: 326 IELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE---GHEKGVNCVD 192
           Q+ +    Y+  I I P   +     S D ++ V++    + N  L     ++  + C +
Sbjct: 5   QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 193 YYHGGDKPYLISGADDRLVKIWDYQNKTC 221
           +    D   +  G     +   D      
Sbjct: 64  FIDNTDL-QIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 18/235 (7%), Positives = 67/235 (28%), Gaps = 11/235 (4%)

Query: 5   LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN---VKSFEVCDLPVR 61
           + I +   A  D +    + P++  +L + ++G + V+  +       +        P+ 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 62  AAKFVPR-KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD 120
              F+      I  G+   ++   +      F +   +   +    +       L ++  
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 121 MLIKLWNWEKAWACQQVFEGHTH-----YVMQIVINPKDNNTFASASLDRTVKVWQLGSA 175
             +      + +    +   + +        +I     +++       +  V+ ++L   
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 176 SPNFTLEGHEKGVNCVDYY--HGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
             +            +        ++      + D  V +  + ++         
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 17/239 (7%), Positives = 59/239 (24%), Gaps = 27/239 (11%)

Query: 15  SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVT 74
              + CC+        +         +               +        + +      
Sbjct: 56  KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115

Query: 75  GSDDMQVCVFNYN--------TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLW 126
            +      +   +           +  +        +   +      L+   ++  ++ +
Sbjct: 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175

Query: 127 NWE--KAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL--- 181
                +         G  + +  + + PK+   +A +S+D  V V        ++     
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 182 ------------EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
                             VN +++       +L +   D ++  W+ Q +  ++     
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.3 bits (119), Expect = 5e-08
 Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 6/164 (3%)

Query: 57  DLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLL 115
           D P +    +   N   VT  D  Q+ + + ++ +     +     V    +  +  +LL
Sbjct: 19  DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLL 77

Query: 116 TSSDDMLIKLWNWEKAW----ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ 171
               D  I + +         A  ++               +D  T A A       +  
Sbjct: 78  VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137

Query: 172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD 215
             +  P   +      V+   Y+       +I+  +     +  
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 10/140 (7%), Positives = 36/140 (25%), Gaps = 6/140 (4%)

Query: 36  NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE----- 90
            G + + + ++ + VK  +        ++      +++    D ++ + +    E     
Sbjct: 41  AGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99

Query: 91  RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVI 150
                                 + +  +           +    +Q+       V     
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159

Query: 151 NPKDNNTFASASLDRTVKVW 170
           +P+       AS +    + 
Sbjct: 160 HPEPRVAAIIASHEHPEFIV 179

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 7e-08
 Identities = 22/206 (10%), Positives = 51/206 (24%), Gaps = 13/206 (6%)

Query: 20  CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM 79
                       A L N    +       ++      + P  A         +     + 
Sbjct: 83  PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT 142

Query: 80  QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLI---------KLWNWEK 130
                  +    F            +++ P++ ++        I            +   
Sbjct: 143 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 202

Query: 131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNF-TLEGHEKGVN 189
               +                  + +  A+ SLD  + ++ +         L  H+ GVN
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262

Query: 190 CVDYYHGGDKPYLISGADDRLVKIWD 215
            + +        L+S   D  +K W+
Sbjct: 263 NLLWETPS---TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 8e-04
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
            +   H+  +  + V+P    L++ S D  I  W+         + + H++ ++ +  + 
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSK 56

Query: 153 KD 154
             
Sbjct: 57  AQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 10/62 (16%)

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
           +   GH   +  + +NP       S S D  +  W   S       + H   +  +D   
Sbjct: 7   KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSK 56

Query: 196 GG 197
             
Sbjct: 57  AQ 58

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 19/211 (9%), Positives = 44/211 (20%), Gaps = 5/211 (2%)

Query: 16  DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG 75
           +     D    +P     +      +   +      +                   +   
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

Query: 76  SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ 135
           +                      S           +    T+         + +      
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
           Q F   T      + +PKD N          +  + L            +    CV +  
Sbjct: 245 QEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK 301

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLE 226
            GD   L  G     + +++      V+ ++
Sbjct: 302 KGD--KLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 10/148 (6%), Positives = 34/148 (22%), Gaps = 5/148 (3%)

Query: 38  HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-RFHSFE 96
           +          +        +    A+F   K    T          +  T +     F 
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248

Query: 97  AHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNN 156
             ++        P  P  +    +  +  ++ ++     +      H    +  +    +
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQ-RKLIKAAN-LDHTYYCVAFDK-KGD 304

Query: 157 TFASASLDRTVKVWQLGSASPNFTLEGH 184
                     + V+   +      ++  
Sbjct: 305 KLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 8/140 (5%), Positives = 37/140 (26%), Gaps = 16/140 (11%)

Query: 105 VAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD 164
            A+     +++ ++    + + +       +             ++ P +   +   +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 165 RTVKVWQL------GSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRL-------- 210
             +    L        A+ +       + +        G + Y       RL        
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 211 --VKIWDYQNKTCVQTLESG 228
             ++++   +    + + + 
Sbjct: 122 PRLEVFSTADGLEAKPVRTF 141

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 19/192 (9%), Positives = 44/192 (22%), Gaps = 1/192 (0%)

Query: 24  HPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV 83
              E               ++                 +  F              +   
Sbjct: 119 AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178

Query: 84  FNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTH 143
           F + +    H+   HS                 +              +    +      
Sbjct: 179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 238

Query: 144 YVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLI 203
             +  +    D    ASAS D+T+K+W + +     T+    +  +         K  L+
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQALV 297

Query: 204 SGADDRLVKIWD 215
           S + +  +   +
Sbjct: 298 SISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 3e-06
 Identities = 29/232 (12%), Positives = 59/232 (25%), Gaps = 8/232 (3%)

Query: 5   LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV---CDLPVR 61
           L      T  S +       P+  +  +   +G+V +W+     ++    +         
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

Query: 62  AAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM 121
            +     K     G    +            +                        S   
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167

Query: 122 LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL 181
              +  +E      +   G     +  V    D + FAS   D T+ ++     +     
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 227

Query: 182 EGHEKGVNCVDYYHGG-----DKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
           E              G     D   + S + D+ +KIW+       +T+  G
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 2/95 (2%)

Query: 65  FVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIK 124
             P  + I   +    V      +L     +  HS         P+  +  +      ++
Sbjct: 25  NTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 83

Query: 125 LWNWE-KAWACQQVFEGHTHYVMQIVINPKDNNTF 158
           +W+        +      +  V  I  + +     
Sbjct: 84  IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA 118

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 3/68 (4%)

Query: 154 DNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKI 213
             +     +   +V    +GS +       H                Y  SG     V+I
Sbjct: 28  AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYYCASGDVHGNVRI 84

Query: 214 WDYQNKTC 221
           WD    T 
Sbjct: 85  WDTTQTTH 92

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 4e-06
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 133 ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL-EGHEKGVNCV 191
           +  QV  GH   +  +  +  D  T  SA  +  +  W + +   N    + H   +  +
Sbjct: 3   SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 192 DYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL 225
                GD   +      ++V        +     
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVA 95

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 4e-06
 Identities = 23/200 (11%), Positives = 58/200 (29%), Gaps = 3/200 (1%)

Query: 16  DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG 75
            +     +       +A+ Y       + +  +   S+        A     +   +   
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS---CVALSNDKQFVAVGGQ 156

Query: 76  SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ 135
              + V   +  ++    +    ++       +     + T     +I            
Sbjct: 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 216

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
                     +  V    DN   A+ SLD +V VW +   S +  +      ++ V+   
Sbjct: 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 276

Query: 196 GGDKPYLISGADDRLVKIWD 215
             ++  ++S   D  +K W+
Sbjct: 277 WLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 4e-05
 Identities = 8/68 (11%), Positives = 21/68 (30%)

Query: 93  HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP 152
                H+  +  ++       L ++  +  I  W+     + +   + H   +  I    
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 153 KDNNTFAS 160
           K +    S
Sbjct: 66  KGDLFTVS 73

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 1e-04
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 6/163 (3%)

Query: 15  SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKN 70
           S    C  L   + ++     +  VHV+        +   +        V  +       
Sbjct: 136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV 195

Query: 71  WIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEK 130
                   +   V N   L   +S+  H+  V CV+  P    L T S D  + +WN  K
Sbjct: 196 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 255

Query: 131 -AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQL 172
            +     +   H    +  VI   +  T  SA  D  +K W +
Sbjct: 256 PSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 2/49 (4%)

Query: 180 TLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
              GH K +  +     G    L S   +  +  WD       +     
Sbjct: 7   VRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDV 53

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 5e-04
 Identities = 8/89 (8%), Positives = 22/89 (24%), Gaps = 1/89 (1%)

Query: 59  PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF-EAHSDYVRCVAVHPTQPFLLTS 117
            + A         + +   +  +  ++ +T      F + H+  +  +           S
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73

Query: 118 SDDMLIKLWNWEKAWACQQVFEGHTHYVM 146
            DD L  +          +          
Sbjct: 74  WDDHLKVVPAGGSGVDSSKAVANKLSSQP 102

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 4e-06
 Identities = 13/205 (6%), Positives = 39/205 (19%), Gaps = 7/205 (3%)

Query: 22  DLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQV 81
           D                  +        +      DL V   +           S + + 
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 82  CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGH 141
                          +                   ++    +   + E      +     
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 142 THYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPY 201
             +     +NP       +      ++ + L   +    +         V+    G    
Sbjct: 240 DVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGS--T 293

Query: 202 LISGADDRLVKIWDYQNKTCVQTLE 226
           +  G     +  +D +       ++
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVD 318

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 19/193 (9%), Positives = 50/193 (25%), Gaps = 30/193 (15%)

Query: 28  PWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY- 86
              +A    G   + + E           +  +    +  +   +V  +   ++   +  
Sbjct: 170 LAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 224

Query: 87  -NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD------------------MLIKLWN 127
               +   + EA ++  R     P     +                           +  
Sbjct: 225 SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284

Query: 128 WEKA-WACQQVFEGHTHYVMQIVINPKDNNT--FASASLDRTVKVWQLGSASPNFTLEGH 184
            +         FE   H +  I ++  D     +A ++ D+T+ +    S     ++   
Sbjct: 285 LDAKTGERLAKFEMG-HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342

Query: 185 EKGVNCVDYYHGG 197
             G   +     G
Sbjct: 343 GHGPQVITTADMG 355

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 27/213 (12%), Positives = 56/213 (26%), Gaps = 2/213 (0%)

Query: 16  DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG 75
                      +   + ++ +  + V +  +N    + +    P+  A     K   VT 
Sbjct: 75  SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN 134

Query: 76  SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ 135
           + D  V V N  T    ++                    + + D M I + +        
Sbjct: 135 NGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194

Query: 136 QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH 195
            V        + +                 TV +   G+      +         +    
Sbjct: 195 TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTP 253

Query: 196 GGDKPYLISGADDRLVKIWDYQNKTCVQTLESG 228
            G K Y ++ +    V + D    T   T+  G
Sbjct: 254 DGKKVY-VALSFCNTVSVIDTATNTITATMAVG 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.77
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.54
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.37
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.28
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.16
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.97
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.91
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.79
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.73
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.57
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.47
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.4
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.9
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.84
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.9
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.75
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.41
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.37
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.2
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.04
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.97
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.58
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.51
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.0
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.68
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.58
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.34
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.72
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.85
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.28
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.34
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.08
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.37
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.5
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	82.28

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-39  Score=257.32  Aligned_cols=219  Identities=20%  Similarity=0.340  Sum_probs=192.6

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE--EEEEecCcCeEEEEEcCCCCEEEEEeCC--CeE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV--KSFEVCDLPVRAAKFVPRKNWIVTGSDD--MQV   81 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~d--~~i   81 (229)
                      ...+.|.+|+.+|.+++|+|++++|++|+.||.|++||+.+++..  ..+..+..+|.++.|+|++++|++++.+  ..+
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence            455668899999999999999999999999999999999987654  4466788899999999999999999865  458


Q ss_pred             EEEECCCcceEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          82 CVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ++|+.++++....+.+|.+.|.+++|+|++++ +++|+.|+.|++||++.. .....+.+|..+|.++.++| ++.++++
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-~~~~~~~~~~~~i~~v~~~p-~~~~l~~  206 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-DGSLFAS  206 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeeccccccccccccccccc-ccccccccccccccccccCc-ccccccc
Confidence            99999999988899999999999999999985 788999999999999876 45666778999999999998 6889999


Q ss_pred             EECCCcEEEEeCCCCCceEEEe-------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         161 ASLDRTVKVWQLGSASPNFTLE-------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       161 ~~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++.|+.|++||...+.....++       +|...|.+++|.  +++.+|++|+.||+|+|||+++++++++++.+
T Consensus       207 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s--~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            9999999999998877665543       578889999995  45679999999999999999999999998754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-39  Score=256.24  Aligned_cols=209  Identities=17%  Similarity=0.313  Sum_probs=180.5

Q ss_pred             cchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           4 RLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      .++.+++|.||+++|.+++|+|++++|++|+.||.|++||+.+++.+..+..+..+|.++.|+|+++++++|+.|+.+.+
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            35677889999999999999999999999999999999999999999999888889999999999988888876666666


Q ss_pred             EE------------------------------------------------------------------------------
Q psy4653          84 FN------------------------------------------------------------------------------   85 (229)
Q Consensus        84 wd------------------------------------------------------------------------------   85 (229)
                      |+                                                                              
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            55                                                                              


Q ss_pred             ---------CCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee-eeecceeeEEEEEEcCCCC
Q psy4653          86 ---------YNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQ-VFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        86 ---------~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~  155 (229)
                               +++++.+..+.+|...|++++|+|++.++++++.|+.|++||+........ ....+...+..+.|+| ++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~  282 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SG  282 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CC
Confidence                     333334445567888899999999999999999999999999987644332 2345567799999998 68


Q ss_pred             CEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         156 NTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       156 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      .+|++|+.|+.|++||+.+++++..+.+|...|.+++|.  +++.+|+||+.||.|+|||
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s--~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT--DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe--CCCCEEEEEccCCEEEEeC
Confidence            899999999999999999999999999999999999995  4667899999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-37  Score=240.57  Aligned_cols=223  Identities=25%  Similarity=0.446  Sum_probs=192.3

Q ss_pred             ccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEE-------------------
Q psy4653           3 LRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA-------------------   63 (229)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~-------------------   63 (229)
                      |+...+..|.||+.+|.+++|+|++++|++|+.||+|++||+++++.+..+..|...|.++                   
T Consensus         5 p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1           5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             CCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             CCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            4556677899999999999999999999999999999999999988777765554444444                   


Q ss_pred             -----------------------EEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCC
Q psy4653          64 -----------------------KFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDD  120 (229)
Q Consensus        64 -----------------------~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d  120 (229)
                                             .|+|+++.+++++.|+.+++||+++++.+..+..|...+.+++|+|++.++++++.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence                                   455556677888899999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCceeeeeeeecceeeEEEEEEcCC-------------------CCCEEEEEECCCcEEEEeCCCCCceEEE
Q psy4653         121 MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK-------------------DNNTFASASLDRTVKVWQLGSASPNFTL  181 (229)
Q Consensus       121 ~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~l~s~~~d~~i~~wd~~~~~~~~~~  181 (229)
                      +.|++|++... .....+.+|...+..+.++|.                   .+..+++++.|+.|++||+.+++++..+
T Consensus       165 ~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         165 QTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             SCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeeccc-eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            99999999876 345556778888888888763                   2357899999999999999999999999


Q ss_pred             ecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         182 EGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       182 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .+|...+.++++.+  ++.+|++|+.||.|++||+++++++.++.+|
T Consensus       244 ~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  288 (317)
T d1vyhc1         244 VGHDNWVRGVLFHS--GGKFILSCADDKTLRVWDYKNKRCMKTLNAH  288 (317)
T ss_dssp             ECCSSCEEEEEECS--SSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             eCCCCCEEEEEECC--CCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence            99999999999854  5668999999999999999999999998876

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-36  Score=241.76  Aligned_cols=211  Identities=18%  Similarity=0.224  Sum_probs=180.7

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCC--eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc--
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQ--NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE--   90 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~--   90 (229)
                      .+||.|++|+|+++.||+|+.||.|++||..+++  .+..++.|..+|.++.|+|++++|++|+.|+.|++||++++.  
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4789999999999999999999999999998875  456678889999999999999999999999999999997655  


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee---eeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA---CQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ....+..|...|.+++|+|+++.+++++.|+.+++|+++....   ......+|...|.++.|+| ++.+|++|+.|+++
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEE
Confidence            3455677889999999999999999999999999999865432   2344567888999999998 68899999999999


Q ss_pred             EEEeCCCC------------------CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         168 KVWQLGSA------------------SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       168 ~~wd~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      ++||....                  ..+....+|...+.+++|.+  ++++|++++.|+.|++||++++.++.++..+
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  242 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA--NGSRVAWVSHDSTVCLADADKKMAVATLASE  242 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS--SSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec--ccccccccccCCcceEEeeecccceeeeecc
Confidence            99997542                  23445567888899999954  5668999999999999999999988887654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-34  Score=232.12  Aligned_cols=213  Identities=23%  Similarity=0.418  Sum_probs=171.9

Q ss_pred             ccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe------------------cCcCeEEEEEcCCCCEEE
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV------------------CDLPVRAAKFVPRKNWIV   73 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~   73 (229)
                      .+|++.|+|++|+|+|++|++|+ |+.|++||+.+++.+..+..                  +...|.+++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            37999999999999999988876 99999999999988766532                  344599999999999999


Q ss_pred             EEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCc----------------------
Q psy4653          74 TGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKA----------------------  131 (229)
Q Consensus        74 sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~----------------------  131 (229)
                      +|+.||.|++||...++.+..+.+|...|.++.+++++..+++++.++.+++||++..                      
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            9999999999999999988888899999988888888777777777777777765432                      


Q ss_pred             --------------------eeeee------eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC---------
Q psy4653         132 --------------------WACQQ------VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS---------  176 (229)
Q Consensus       132 --------------------~~~~~------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---------  176 (229)
                                          .....      ...+|...|.++.|+| ++.+|++|+.|+.|++||++...         
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC-------------
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence                                11100      0124567789999998 68899999999999999987543         


Q ss_pred             ---ceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         177 ---PNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       177 ---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                         .......|...+.+++|.+  ++.+|++|+.||.|++||+++++++.++++|
T Consensus       297 ~~~~~~~~~~~~~~v~~~~~s~--~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         297 SGTCEVTYIGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECG--GGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             ccceeeecccccceEEEEEECC--CCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence               2334567888899999854  5669999999999999999999999999876

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=228.28  Aligned_cols=221  Identities=14%  Similarity=0.238  Sum_probs=182.4

Q ss_pred             hhhcccC-CCceEEEEEcc--CCCeEEEEEecCeEEEEEcCCCCeEE--------EEEecCcCeEEEEEcCCCCEEEEEe
Q psy4653           8 KRKLTAR-SDRVKCCDLHP--TEPWMLASLYNGHVHVWNHETNQNVK--------SFEVCDLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus         8 ~~~~~~~-~~~v~~~~~~p--~~~~l~~~~~dg~v~~wd~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~sg~   76 (229)
                      ...+.+| +..|.+++|+|  ++.+|++|+.||+|++||+..++...        .+..+..+|.++.|+++++.|++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            3456777 46899999998  45789999999999999997654322        2344667899999999999988776


Q ss_pred             C--CCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEEecCCceeee--eeeecceeeEEEEEEc
Q psy4653          77 D--DMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLWNWEKAWACQ--QVFEGHTHYVMQIVIN  151 (229)
Q Consensus        77 ~--d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lwd~~~~~~~~--~~~~~~~~~v~~~~~~  151 (229)
                      .  ++.+.+|+.++++.+..+.+|...|.+++|+|++++ +++++.|+.+++||+.......  ....+|...|.+++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            5  567999999999999999999999999999999875 6789999999999987654332  2345678889999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeC-CCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         152 PKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHG-GDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       152 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |..+.++++++.|+.|++||+++++.+..+++|...+..+.|... +++.+|++++.|+.|+|||++++++++++..+
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            977889999999999999999999999999988877655444321 35668999999999999999999999987654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-34  Score=226.03  Aligned_cols=216  Identities=17%  Similarity=0.265  Sum_probs=181.5

Q ss_pred             CccchhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeE---EE--EEecCcCeEEEEEcCCCCEEEEEe
Q psy4653           2 PLRLDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNV---KS--FEVCDLPVRAAKFVPRKNWIVTGS   76 (229)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~---~~--~~~~~~~v~~~~~~~~~~~l~sg~   76 (229)
                      |++.+..+.+ +|..+|.|++|+|++++|++|+ ||.|++||+.++...   ..  ...|...|.+++|+|++++|++|+
T Consensus        39 p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          39 PRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            4444555555 6999999999999999999987 899999999875432   22  234567899999999999999999


Q ss_pred             CCCeEEEEECCCc--ceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCC
Q psy4653          77 DDMQVCVFNYNTL--ERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKD  154 (229)
Q Consensus        77 ~d~~i~iwd~~~~--~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (229)
                      .|+.|++||+...  +....+..|...+.+++|+|++.++++++.|+.|++|++... .......+|...+.++.+++ +
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~l~~s~-~  194 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISN-D  194 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-T
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc-c
Confidence            9999999998754  445667889999999999999999999999999999999876 44566678889999999998 6


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         155 NNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +..+++++.|+.+++||+++++.+..+ .|...+.+++|.  +++.+|++|+.|+.|++||+++++....
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~  261 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYC--PTGEWLAVGMESSNVEVLHVNKPDKYQL  261 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred             ccccccccccccccccccccceeeccc-ccccceEEEEEc--ccccccceeccccccccccccccccccc
Confidence            789999999999999999988876655 467789999984  4566899999999999999998876543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.2e-34  Score=220.03  Aligned_cols=205  Identities=25%  Similarity=0.462  Sum_probs=187.8

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      ....+.+|...+.++.|+|+++.+++++.|+.+++||+++++.+..+..+...+.++.|+|++++|++|+.|+.|++|+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEee
Confidence            34456789999999999999999999999999999999999999999989889999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCC--------------------CEEEEEeCCCcEEEEecCCceeeeeeeecceeeEE
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQ--------------------PFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM  146 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~--------------------~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~  146 (229)
                      .+++....+..|...+.++.|+|+.                    ..+++++.|+.|++||+..+ .+...+.+|..+|.
T Consensus       173 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~  251 (317)
T d1vyhc1         173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVR  251 (317)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEE
T ss_pred             ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCCCEE
Confidence            9999999999999999999998863                    46889999999999999876 45666788999999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         147 QIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      .+.++| ++.+|++|+.|+.|++||+.+++++.++.+|...|.+++|.  +++++|+||+.||+|+|||
T Consensus       252 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s--~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC--SSSSCEEEEETTSEEEEEC
T ss_pred             EEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCeEEEeC
Confidence            999998 67899999999999999999999999999999999999995  4566899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-33  Score=222.25  Aligned_cols=207  Identities=13%  Similarity=0.134  Sum_probs=181.7

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceE--E
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERF--H   93 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~   93 (229)
                      ..+.+++++|+++.|+.+. ++.|.+||+++.+....+..|...|.++.|+|++++|++|+.||.|++||++..+..  .
T Consensus        18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc
Confidence            3567889999999988874 778999999999998899899999999999999999999999999999999876643  4


Q ss_pred             EeccCCCceeEEEEcCCCCEEEEEeC--CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEe
Q psy4653          94 SFEAHSDYVRCVAVHPTQPFLLTSSD--DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQ  171 (229)
Q Consensus        94 ~~~~h~~~i~~v~~~~~~~~~~s~~~--d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd  171 (229)
                      .+..|.+.|.+++|+|+++++++++.  ++.+++|+++.. .....+.+|...|..+.|+|.....|++|+.|+.|++||
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d  175 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE  175 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred             ccccccCccccccccccccccccccccccccccccccccc-cccccccccccccccccccccceeeeccccccccccccc
Confidence            57889999999999999999998876  456999999866 345567889999999999995555689999999999999


Q ss_pred             CCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         172 LGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       172 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +++.+....+..|...+.++.+.  +++++|++++.|+.|++||.++++.+.+++
T Consensus       176 ~~~~~~~~~~~~~~~~i~~v~~~--p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         176 GPPFKFKSTFGEHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             TTTBEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             ccccccccccccccccccccccC--cccccccccccccccccccccccccccccc
Confidence            99999888999999999999985  466799999999999999999988887765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5e-34  Score=222.24  Aligned_cols=211  Identities=15%  Similarity=0.205  Sum_probs=171.7

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-VCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      .+.+.+.||+++|.+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.++.|+|+++++ +++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEe
Confidence            3567799999999999999999999999999999999999999888774 567789999999998755 55679999999


Q ss_pred             ECCCcce-------------EE--------------------Eec-------cCCCceeEEEEcCCCCEEEEEeCCCcEE
Q psy4653          85 NYNTLER-------------FH--------------------SFE-------AHSDYVRCVAVHPTQPFLLTSSDDMLIK  124 (229)
Q Consensus        85 d~~~~~~-------------~~--------------------~~~-------~h~~~i~~v~~~~~~~~~~s~~~d~~v~  124 (229)
                      +......             ..                    .+.       .....+.+++|+|++.++++++.|+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8643110             00                    000       0123467899999999999999999999


Q ss_pred             EEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCce---EEEecCCCceEEEEEEeCCCcCE
Q psy4653         125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN---FTLEGHEKGVNCVDYYHGGDKPY  201 (229)
Q Consensus       125 lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~  201 (229)
                      +||++...........|...|.++.++| ++.++++++.|+.|++||+.++...   ..+.+|...|.+++|.  +++.+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~  238 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS--PDNVR  238 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC--TTSSE
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc--ccccc
Confidence            9999776444444557888999999998 6789999999999999999776543   3456788899999984  46679


Q ss_pred             EEEeeCCCeEEEEECCCCe
Q psy4653         202 LISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       202 l~s~s~d~~i~iwd~~~~~  220 (229)
                      |++|+.||.|++||+++++
T Consensus       239 l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             EEEEETTSCEEEEETTCTT
T ss_pred             eEEEcCCCEEEEEECCCCC
Confidence            9999999999999998764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-33  Score=220.18  Aligned_cols=211  Identities=15%  Similarity=0.264  Sum_probs=185.4

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCC--CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETN--QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT   88 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~   88 (229)
                      ..+|+..|.+++|+|+++.|++|+.||.|++||+...  +....+..+...+.++.|+|++.++++++.|+.|.+|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4579999999999999999999999999999998754  44556667778899999999999999999999999999999


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      ++.......|...|.+++|++++..+++++.|+.+++||++.... ...+ .|...|.++.++| ++.++++|+.|+.++
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-~~~~-~~~~~i~~l~~~~-~~~~l~~~~~d~~i~  249 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVE  249 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccee-eccc-ccccceEEEEEcc-cccccceeccccccc
Confidence            998888889999999999999999999999999999999987643 3333 4678899999998 678999999999999


Q ss_pred             EEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         169 VWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       169 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +||++.... .....|...+.+++|.  +++++|++|+.||.|++||+.+++++.++..
T Consensus       250 i~d~~~~~~-~~~~~~~~~i~~v~~s--~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  305 (337)
T d1gxra_         250 VLHVNKPDK-YQLHLHESCVLSLKFA--YCGKWFVSTGKDNLLNAWRTPYGASIFQSKE  305 (337)
T ss_dssp             EEETTSSCE-EEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ccccccccc-ccccccccccceEEEC--CCCCEEEEEeCCCeEEEEECCCCCEEEEccC
Confidence            999987764 4567888899999994  4667999999999999999999998877653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-33  Score=224.18  Aligned_cols=209  Identities=13%  Similarity=0.162  Sum_probs=173.2

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEE--EEecCcCeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKS--FEVCDLPVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      .....+.+|..+|.+++|+|++++|++++.|+.|++||+.++.....  +..+...+.++.|+|+++.|++|+.|+.|++
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  121 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCccee
Confidence            34556889999999999999999999999999999999988765443  3456678999999999999999999999999


Q ss_pred             EECCCcce----EEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCce-----------------eeeeeeecce
Q psy4653          84 FNYNTLER----FHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAW-----------------ACQQVFEGHT  142 (229)
Q Consensus        84 wd~~~~~~----~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~-----------------~~~~~~~~~~  142 (229)
                      |+++....    ......|...|.+++|+|++.+|++++.|++|++||+....                 .......+|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  201 (371)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             eeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence            98765432    23456788999999999999999999999999999975321                 1223345678


Q ss_pred             eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCC
Q psy4653         143 HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN  218 (229)
Q Consensus       143 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~  218 (229)
                      ..+..++|+| ++.++++++.|+.|++||+..+..+..+..|..++.+++|.+  ++.+|++ +.|+.+++|+...
T Consensus       202 ~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~--d~~~la~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         202 GWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT--ESSLVAA-GHDCFPVLFTYDS  273 (371)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE--TTEEEEE-ETTSSCEEEEEET
T ss_pred             CcEEEEEeec-ccccccccccCCcceEEeeecccceeeeecccccceeeeecC--CCCEEEE-EcCCceEEEEeeC
Confidence            8899999998 688999999999999999999999999999999999999975  4446665 4577777766543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-32  Score=220.39  Aligned_cols=209  Identities=24%  Similarity=0.399  Sum_probs=175.4

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEc-CCCCEEEEEeCCCeEEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFV-PRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~d~~i~iwd   85 (229)
                      ....+.+|...|.++++++++..+++++.++.+++||.++.........+.. ..++.+. +++++|++|+.|+.|.+||
T Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~  233 (388)
T d1erja_         155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWD  233 (388)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEee
Confidence            3445778999999999999999999999999999999999887776655554 4445555 4788999999999999999


Q ss_pred             CCCcceEEEe-------ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee-----------eeeeeecceeeEEE
Q psy4653          86 YNTLERFHSF-------EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA-----------CQQVFEGHTHYVMQ  147 (229)
Q Consensus        86 ~~~~~~~~~~-------~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~-----------~~~~~~~~~~~v~~  147 (229)
                      .+++..+..+       .+|...|.+++|+|++.++++++.|+.|++||+.....           .......|...|..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  313 (388)
T d1erja_         234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS  313 (388)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred             cccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEE
Confidence            9987765544       35788999999999999999999999999999865322           22344567888999


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEe----CCCcCEEEEeeCCCeEEEEECC
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYH----GGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      +.|+| ++.+|++|+.|+.|++||+++++++.++++|...|.++++.+    .+++.+|+||+.||+|+|||++
T Consensus       314 ~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99998 678999999999999999999999999999999999998753    3466799999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-30  Score=204.73  Aligned_cols=209  Identities=21%  Similarity=0.356  Sum_probs=165.7

Q ss_pred             hhhcccCCCce-EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653           8 KRKLTARSDRV-KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus         8 ~~~~~~~~~~v-~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      +.+|.||++.| .|++  +++++|++|+.||.|++||+.+++.+..+..|..+|.++.|+| +++|++|+.|+.|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-TTEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-CCEEEEEecccccccccc
Confidence            34588999987 5554  5678999999999999999999999999999999999999998 468999999999999999


Q ss_pred             CCcceEEEeccCC--CceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee------------------------------
Q psy4653          87 NTLERFHSFEAHS--DYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC------------------------------  134 (229)
Q Consensus        87 ~~~~~~~~~~~h~--~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~------------------------------  134 (229)
                      ...+.........  .......+++++.++++++.|+.|++||+......                              
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            8877655544333  33455667788888888888888888887542110                              


Q ss_pred             --------------------------------eeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe
Q psy4653         135 --------------------------------QQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE  182 (229)
Q Consensus       135 --------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  182 (229)
                                                      .....++...+....++| ++.++++++.|+.|++||+.++..+..+.
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccc
Confidence                                            011122334455667776 57899999999999999999999999999


Q ss_pred             cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         183 GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       183 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +|...+.++++.    +.+|++|+.||.|++||++++.....
T Consensus       241 ~h~~~v~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         241 GHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             CCSSCCCEEEEC----SSEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccc----cceeeeeecccccccccccccceecc
Confidence            999999999872    35899999999999999998765443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-30  Score=209.85  Aligned_cols=214  Identities=12%  Similarity=0.186  Sum_probs=161.7

Q ss_pred             hhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCe-------EE------------------------------
Q psy4653           9 RKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQN-------VK------------------------------   51 (229)
Q Consensus         9 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~-------~~------------------------------   51 (229)
                      ...++|...|.++++++  +++++++.|++|++||..+.+.       ..                              
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            44679999999999875  6899999999999999754321       00                              


Q ss_pred             -------EEE--e-------------------cCcCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCcc--------
Q psy4653          52 -------SFE--V-------------------CDLPVRAAKFVPR-----KNWIVTGSDDMQVCVFNYNTLE--------   90 (229)
Q Consensus        52 -------~~~--~-------------------~~~~v~~~~~~~~-----~~~l~sg~~d~~i~iwd~~~~~--------   90 (229)
                             .+.  .                   +...+..+.|.++     ++++++++.||.+.+|++....        
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence                   000  0                   0112334455543     3578888899999999864211        


Q ss_pred             ----------eEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeee-----eeeecceeeEEEEEEcCCCC
Q psy4653          91 ----------RFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQ-----QVFEGHTHYVMQIVINPKDN  155 (229)
Q Consensus        91 ----------~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~  155 (229)
                                .......+...+.+++|+|++ ++++|+.|++|++||++......     ..+.+|..+|.+++|+| ++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  243 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QG  243 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-ST
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-cc
Confidence                      011122345568899999987 88999999999999998764432     23457899999999999 78


Q ss_pred             CEEEEEECCCc---EEEEeCCCCCceEEEe-------------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         156 NTFASASLDRT---VKVWQLGSASPNFTLE-------------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       156 ~~l~s~~~d~~---i~~wd~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .+|++|+.|++   |++||+.++..+..+.             +|...|.+++|.  +++++|+||+.|++|+|||++++
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs--pd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN--DSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTT
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC--CCCCeeEEECCCCEEEEEECCCC
Confidence            99999999975   9999999887766653             799999999995  46679999999999999999999


Q ss_pred             eEEEeeccC
Q psy4653         220 TCVQTLESG  228 (229)
Q Consensus       220 ~~~~~~~~~  228 (229)
                      +++.++++|
T Consensus       322 ~~~~~l~gH  330 (393)
T d1sq9a_         322 ERITTLNMH  330 (393)
T ss_dssp             EEEEEEECC
T ss_pred             CEEEEECCc
Confidence            999999876

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.8e-30  Score=205.23  Aligned_cols=203  Identities=14%  Similarity=0.148  Sum_probs=166.1

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEEe--cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCE-EEEEeCCCeEEEEEC
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASLY--NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNW-IVTGSDDMQVCVFNY   86 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~~--dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d~~i~iwd~   86 (229)
                      .+..|..+|.+++|+|+++.+++++.  ++.+++|+..+++.+..+..|...+.++.|+|++.+ +++++.|+.+++||.
T Consensus       110 ~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~  189 (325)
T d1pgua1         110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  189 (325)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             ccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccc
Confidence            45678899999999999999988764  678999999999999998888999999999998864 788999999999999


Q ss_pred             CCcceEEEe---ccCCCceeEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEE----EEEEcCCCCCEE
Q psy4653          87 NTLERFHSF---EAHSDYVRCVAVHPT-QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM----QIVINPKDNNTF  158 (229)
Q Consensus        87 ~~~~~~~~~---~~h~~~i~~v~~~~~-~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~l  158 (229)
                      .+.+....+   ..|...|.+++|+|+ +.++++++.|+.|++||++... ....+.+|..++.    .+.+ | ++.+|
T Consensus       190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~-~-dg~~l  266 (325)
T d1pgua1         190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSW-L-DSQKF  266 (325)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEE-S-SSSEE
T ss_pred             cccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc-ccccccccccccccceeeeec-c-CCCEE
Confidence            887755443   456778999999996 5789999999999999998764 4556667766554    4444 3 57899


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecCCCc--eEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGHEKG--VNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      ++++.|+.|++||+++++++..+..|...  +..+++.+.++ .+|++|+.||.|++||+
T Consensus       267 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            99999999999999999888877766543  44555554433 37899999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.1e-31  Score=207.95  Aligned_cols=199  Identities=15%  Similarity=0.307  Sum_probs=150.4

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEE----------------------
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAA----------------------   63 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~----------------------   63 (229)
                      ++.+.+.||..+|.+++|+|    |++|+.||.|++||+.++..     .|...|.++                      
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~-----~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC-----CCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC-----CCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            45677899999999999987    88999999999998765321     122222222                      


Q ss_pred             --------------------------------------------------EEcCCCCEEEEEeCCC-eEEEEECCCcceE
Q psy4653          64 --------------------------------------------------KFVPRKNWIVTGSDDM-QVCVFNYNTLERF   92 (229)
Q Consensus        64 --------------------------------------------------~~~~~~~~l~sg~~d~-~i~iwd~~~~~~~   92 (229)
                                                                        .++++++.+++++.++ .+++|++...+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~  154 (287)
T d1pgua2          75 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS  154 (287)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred             cccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecccccee
Confidence                                                              2334445555555543 4666666544433


Q ss_pred             EEe-ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCC---------CCCEEEEEE
Q psy4653          93 HSF-EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPK---------DNNTFASAS  162 (229)
Q Consensus        93 ~~~-~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~l~s~~  162 (229)
                      ..+ ..|...+++++|+|++.+|++++.|+.|++||+.+.......+.+|..+|.++.|+|.         ++.+++||+
T Consensus       155 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs  234 (287)
T d1pgua2         155 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS  234 (287)
T ss_dssp             EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred             eeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec
Confidence            333 2466779999999999999999999999999998876666667889999999999873         456899999


Q ss_pred             CCCcEEEEeCCCC-CceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         163 LDRTVKVWQLGSA-SPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       163 ~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      .|++|++||++.. +.+..+.+|...|.+++|.+.  + .|+|++.|+.|++||+
T Consensus       235 ~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~--~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--S-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET--T-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC--C-EEEEEECCCeEEEEEE
Confidence            9999999999764 455666789999999999753  3 5899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.2e-29  Score=198.84  Aligned_cols=212  Identities=26%  Similarity=0.435  Sum_probs=169.4

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVF   84 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iw   84 (229)
                      ++..+.|+||++.|.+ ++++++++|++|+.||+|++||+.+++++..+..|...|.++.|+|  ++|++|+.|+.+++|
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~   82 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW   82 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccc
Confidence            4556779999999976 4777899999999999999999999999999999999999999986  599999999999999


Q ss_pred             ECCCcceEEEeccCCCce--------------------------------------eEEEEcCCCCEEEEEeCCCcEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYV--------------------------------------RCVAVHPTQPFLLTSSDDMLIKLW  126 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i--------------------------------------~~v~~~~~~~~~~s~~~d~~v~lw  126 (229)
                      +............+...+                                      ......+....+++++.|+.|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred             ccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence            987654332222111111                                      112233345578889999999999


Q ss_pred             ecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee
Q psy4653         127 NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       127 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                      |+... .....+.+|...+....+   ++.++++|+.|+.|++||++..+++..+.+|...+.++++.    +++|++|+
T Consensus       163 d~~~~-~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~s  234 (342)
T d2ovrb2         163 DPETE-TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK----DNILVSGN  234 (342)
T ss_dssp             EGGGT-EEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE----TTEEEEEE
T ss_pred             ecccc-eeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC----CCEEEEEc
Confidence            98765 445566777766666554   46799999999999999999999999999999989888773    24899999


Q ss_pred             CCCeEEEEECCCCeEEEeecc
Q psy4653         207 DDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       207 ~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      .|+.|++||+.+.+....+..
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~  255 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQG  255 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECS
T ss_pred             CCCEEEEEecccccccccccc
Confidence            999999999999888777654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.9e-30  Score=199.36  Aligned_cols=221  Identities=13%  Similarity=0.253  Sum_probs=155.1

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE---EEEecCcCeEEEEEcCCC-CEEEEEeCCCe
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK---SFEVCDLPVRAAKFVPRK-NWIVTGSDDMQ   80 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l~sg~~d~~   80 (229)
                      |++.+...+|.+.|.+++|+|++++|++|+.||+|++||++++....   ....|..+|.+++|+|++ .+|++|+.|+.
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            56667788999999999999999999999999999999998765432   233578899999999864 58999999999


Q ss_pred             EEEEECCCcceEEEeccCCCc-eeE------------------------------------------------EEEcCCC
Q psy4653          81 VCVFNYNTLERFHSFEAHSDY-VRC------------------------------------------------VAVHPTQ  111 (229)
Q Consensus        81 i~iwd~~~~~~~~~~~~h~~~-i~~------------------------------------------------v~~~~~~  111 (229)
                      |++|+............+... ...                                                +.+.+.+
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            999998765443333222221 122                                                2333444


Q ss_pred             CEEEEEeCCCcEEEEecCCceeee--eeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCce------EE---
Q psy4653         112 PFLLTSSDDMLIKLWNWEKAWACQ--QVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN------FT---  180 (229)
Q Consensus       112 ~~~~s~~~d~~v~lwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~---  180 (229)
                      ..+++++.|+.|++||+.......  .....+...+....+.+.++..+++++.|+.+.+|++......      ..   
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            455555555555555554322111  1111222334555566667789999999999999997643211      11   


Q ss_pred             ------EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         181 ------LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       181 ------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                            ...|...+.+++|.  +++++|+||+.||.|++||+++++.+.++..
T Consensus       241 ~~~~~~~~~~~~~v~~l~~s--p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFS--PRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEEC--TTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             eeeccCCCcccccceeEEec--CCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence                  13456678899995  4566899999999999999999999988753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-27  Score=182.55  Aligned_cols=208  Identities=25%  Similarity=0.457  Sum_probs=170.8

Q ss_pred             hhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q psy4653           8 KRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYN   87 (229)
Q Consensus         8 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~   87 (229)
                      .+-..+|+..|.|++|  ++++|++|+.||+|++||+++++++..+..|..+|.++.|  ++++|++|+.|+.|++|++.
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            3446688889998764  7889999999999999999999999999999999999887  57899999999999999999


Q ss_pred             CcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCcee--eeeeeecceeeEEEEEEcCCCCCEEEEEECCC
Q psy4653          88 TLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWA--CQQVFEGHTHYVMQIVINPKDNNTFASASLDR  165 (229)
Q Consensus        88 ~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  165 (229)
                      .+........+...  ...+.+....++++..++.+.+|+......  ....+..|...+....+.   ...+++++.|+
T Consensus        84 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~  158 (293)
T d1p22a2          84 TGEMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR  158 (293)
T ss_dssp             SCCEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred             cccccccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec---ccccccccCCC
Confidence            88776665544333  445556677899999999999999876533  234455677777776664   45788999999


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .|++||.++.+.+..+.++...+..+.+.    +.++++++.|+.|++||+++.+.+.....+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  217 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGH  217 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC----CCeEEEecCCCEEEEEecccceeeeeeccc
Confidence            99999999999999999998888877762    347999999999999999999988887654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3.9e-28  Score=188.57  Aligned_cols=198  Identities=18%  Similarity=0.281  Sum_probs=156.7

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      ...|...+.+++|+|++..++++ .++.+.+|+...  ....  .....+.++.|+|++++|++|+.|+.|.+||+++++
T Consensus        95 ~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~--~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~  169 (299)
T d1nr0a2          95 ANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK--LTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  169 (299)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE--EEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             ccccccccccccccccccccccc-cccccccccccc--cccc--cccccccccccccccccccccccccccccccccccc
Confidence            44678889999999999866555 577999999553  2222  234568899999999999999999999999998766


Q ss_pred             eEE-EeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceee--eeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          91 RFH-SFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWAC--QQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        91 ~~~-~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ... ....|...|.+++|+|++.++++++.|+.|++||+.+....  ...+.+|..+|.++.|+| ++.+|++|+.|+.|
T Consensus       170 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         170 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSV  248 (299)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccceEEEcCCCEE
Confidence            433 34568899999999999999999999999999998765433  344567889999999998 68899999999999


Q ss_pred             EEEeCCCCCceE--EEecC-CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         168 KVWQLGSASPNF--TLEGH-EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       168 ~~wd~~~~~~~~--~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      ++||+.+.....  ....| ...+.++.+. +  +.+|+||+.|+.|++||+.
T Consensus       249 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~--~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         249 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-N--ETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEETTCTTSCCEEETTSSTTSCEEEEEEE-E--TTEEEEEETTSCEEEEECC
T ss_pred             EEEECCCCCcceEEEecCCCCCcEEEEEEC-C--CCEEEEEeCCCEEEEEecc
Confidence            999998765332  22334 3456666653 2  3489999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=6.9e-28  Score=189.09  Aligned_cols=178  Identities=20%  Similarity=0.341  Sum_probs=151.3

Q ss_pred             CeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4653          48 QNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN  127 (229)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd  127 (229)
                      +..+++++|..+|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.++++++.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             cCCce---------------------------------------------------------------------------
Q psy4653         128 WEKAW---------------------------------------------------------------------------  132 (229)
Q Consensus       128 ~~~~~---------------------------------------------------------------------------  132 (229)
                      .....                                                                           
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            43210                                                                           


Q ss_pred             -----------eeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEe--cCCCceEEEEEEeCCCc
Q psy4653         133 -----------ACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLE--GHEKGVNCVDYYHGGDK  199 (229)
Q Consensus       133 -----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~  199 (229)
                                 .....+.+|..+|.+++|+| ++.+|++|+.|+.|++||++.......+.  .+...+.+++|.  +++
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~  282 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS--KSG  282 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC--SSS
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC--CCC
Confidence                       01122345677889999998 68899999999999999998887666553  456678999985  456


Q ss_pred             CEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         200 PYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       200 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      .+|++|+.||.|++||+.+++++.++.+|
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEcCC
Confidence            79999999999999999999999999876

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1e-27  Score=188.53  Aligned_cols=210  Identities=17%  Similarity=0.283  Sum_probs=156.7

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc--CeEEEEEcCCCCEEEEEeCCCeEEE
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL--PVRAAKFVPRKNWIVTGSDDMQVCV   83 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~d~~i~i   83 (229)
                      +..+.+.+|+.+|.+++|+|+ ..|++|+.|+.|++|+....+..........  ......+.++++.+++++.|+.|++
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  122 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV  122 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEE
Confidence            455678899999999999986 5799999999999999998776554433222  2334445555566666666666666


Q ss_pred             EECC---------------------------------------------------------------CcceEEEeccCCC
Q psy4653          84 FNYN---------------------------------------------------------------TLERFHSFEAHSD  100 (229)
Q Consensus        84 wd~~---------------------------------------------------------------~~~~~~~~~~h~~  100 (229)
                      ||++                                                               +++.+....++..
T Consensus       123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  202 (355)
T d1nexb2         123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  202 (355)
T ss_dssp             EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccc
Confidence            6653                                                               3333444445666


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEE
Q psy4653         101 YVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFT  180 (229)
Q Consensus       101 ~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  180 (229)
                      .+.++.|+|++..+++++.|+.|++||++.. .....+.+|...|..+.+++   .+|++|+.|+.|++||+++....  
T Consensus       203 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~--  276 (355)
T d1nexb2         203 RIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRK--  276 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEE--
T ss_pred             ccccccccccceeeecccccceEEeeecccc-cccccccccccccccccccc---ceeeeeeccccccccccccccee--
Confidence            7789999999999999999999999999876 44566788999999998864   69999999999999999876644  


Q ss_pred             EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEe
Q psy4653         181 LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT  224 (229)
Q Consensus       181 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  224 (229)
                      +..|...+.++.+.+. ++.+|++| .|+.|+|||+++++++..
T Consensus       277 ~~~~~~~~~~~~~~~~-~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         277 FSYHHTNLSAITTFYV-SDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             EEEECTTCCCCCEEEE-CSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             cccccCCceEEEEEcC-CCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            4556666666555443 34455555 589999999999988754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-27  Score=191.54  Aligned_cols=200  Identities=19%  Similarity=0.247  Sum_probs=153.6

Q ss_pred             CCCceEEEEEccCC-----CeEEEEEecCeEEEEEcCCCCe------------EE---EE---EecCcCeEEEEEcCCCC
Q psy4653          14 RSDRVKCCDLHPTE-----PWMLASLYNGHVHVWNHETNQN------------VK---SF---EVCDLPVRAAKFVPRKN   70 (229)
Q Consensus        14 ~~~~v~~~~~~p~~-----~~l~~~~~dg~v~~wd~~~~~~------------~~---~~---~~~~~~v~~~~~~~~~~   70 (229)
                      +...+.+++|.++.     ..+++++.||.+++||+.....            ..   ..   ..+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            44567788887764     5788899999999999853210            00   01   1123458899999987 


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEe------ccCCCceeEEEEcCCCCEEEEEeCCCc---EEEEecCCceeeee-----
Q psy4653          71 WIVTGSDDMQVCVFNYNTLERFHSF------EAHSDYVRCVAVHPTQPFLLTSSDDML---IKLWNWEKAWACQQ-----  136 (229)
Q Consensus        71 ~l~sg~~d~~i~iwd~~~~~~~~~~------~~h~~~i~~v~~~~~~~~~~s~~~d~~---v~lwd~~~~~~~~~-----  136 (229)
                      +|++|+.|+.|++||+.+++.+..+      .+|...|++++|+|++++|++|+.|++   |++||++.+.....     
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            8999999999999999988776543      468899999999999999999999975   89999976533222     


Q ss_pred             -------eeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCce---------------------
Q psy4653         137 -------VFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV---------------------  188 (229)
Q Consensus       137 -------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v---------------------  188 (229)
                             .+.+|...|++++|+| ++.+|+||+.|++|++||+.+++++.++++|...|                     
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             -------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             ccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence                   2357999999999998 68999999999999999999999999999886443                     


Q ss_pred             EEEEEEeCC--------CcCEEEEeeCCCeEEEEE
Q psy4653         189 NCVDYYHGG--------DKPYLISGADDRLVKIWD  215 (229)
Q Consensus       189 ~~~~~~~~~--------~~~~l~s~s~d~~i~iwd  215 (229)
                      .++.|.+.+        ....|++++.|+.|++|.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         356 FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            344443221        123578888888888885

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-26  Score=179.10  Aligned_cols=209  Identities=22%  Similarity=0.435  Sum_probs=162.8

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCc---------------------------
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDL---------------------------   58 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~---------------------------   58 (229)
                      +..+.+.+|+.+|.+++|+|+  .|++|+.|+.+++|+...............                           
T Consensus        48 ~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  125 (342)
T d2ovrb2          48 KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE  125 (342)
T ss_dssp             CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred             CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecc
Confidence            455678999999999999975  799999999999999886544322211110                           


Q ss_pred             -----------CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4653          59 -----------PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWN  127 (229)
Q Consensus        59 -----------~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd  127 (229)
                                 ......+.+..+.+++++.|+.|++||....+.+..+.+|...+.++.  +++.++++++.|+.|++||
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             SCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEE
T ss_pred             cccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEee
Confidence                       111122333456788999999999999988888888888877666554  4678999999999999999


Q ss_pred             cCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec---CCCceEEEEEEeCCCcCEEEE
Q psy4653         128 WEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG---HEKGVNCVDYYHGGDKPYLIS  204 (229)
Q Consensus       128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s  204 (229)
                      ++.. .....+.+|...+..+.++   +.+|++|+.|+.|++||+...+....+..   |...+.++.+    ++.++++
T Consensus       204 ~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s  275 (342)
T d2ovrb2         204 VETG-NCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----NKNFVIT  275 (342)
T ss_dssp             TTTC-CEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE----CSSEEEE
T ss_pred             cccc-eeeeEecccccceeEEecC---CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc----CCCeeEE
Confidence            9876 4456677888888888775   46999999999999999998887777765   4445666665    3358999


Q ss_pred             eeCCCeEEEEECCCCeEEEeec
Q psy4653         205 GADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       205 ~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |+.||.|++||++++++++++.
T Consensus       276 ~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         276 SSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCCEEEEEECCCCCEEEEEe
Confidence            9999999999999999988874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-26  Score=176.42  Aligned_cols=197  Identities=28%  Similarity=0.474  Sum_probs=154.1

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE------------------------------
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE------------------------------   54 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~------------------------------   54 (229)
                      .+..+.+.+|+.+|.+++|  ++++|++|+.|+.|++|++.++.......                              
T Consensus        45 ~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (293)
T d1p22a2          45 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM  122 (293)
T ss_dssp             CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEEC
T ss_pred             CcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeec
Confidence            3456678999999999887  56789999999999999998765433221                              


Q ss_pred             -------------ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC
Q psy4653          55 -------------VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM  121 (229)
Q Consensus        55 -------------~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~  121 (229)
                                   .+...+....+  ....+++++.|+.|++||.++++.+..+.++...+..+.+++  ..+++++.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg  198 (293)
T d1p22a2         123 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDN  198 (293)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET--TEEEEEETTS
T ss_pred             ccccccccccccccccccccccee--cccccccccCCCceeeecCCCCcEEEEEcccccccccccCCC--CeEEEecCCC
Confidence                         11122333333  345688899999999999999999999999988888887764  6899999999


Q ss_pred             cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCC---------CCceEEEecCCCceEEEE
Q psy4653         122 LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGS---------ASPNFTLEGHEKGVNCVD  192 (229)
Q Consensus       122 ~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~h~~~v~~~~  192 (229)
                      +|++||++.. .....+.++...+....  + ++.+|++|+.|+.|++||+..         ..++..+.+|...|.+++
T Consensus       199 ~i~i~d~~~~-~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~  274 (293)
T d1p22a2         199 TIRLWDIECG-ACLRVLEGHEELVRCIR--F-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  274 (293)
T ss_dssp             CEEEEETTTC-CEEEEECCCSSCEEEEE--C-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             EEEEEecccc-eeeeeecccceeeeecc--c-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE
Confidence            9999999876 34555667777666544  3 567999999999999999743         235677889999999998


Q ss_pred             EEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         193 YYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       193 ~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      |    ++.+|+||+.||+|+|||
T Consensus       275 ~----d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         275 F----DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             E----CSSCEEECCSSSEEEEEC
T ss_pred             E----cCCEEEEEecCCEEEEeC
Confidence            8    234799999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=8e-25  Score=173.02  Aligned_cols=156  Identities=9%  Similarity=0.005  Sum_probs=130.0

Q ss_pred             cCCCceEEEEEccCCCeEEEEEecC--eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASLYNG--HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~   90 (229)
                      +|..+|.+++|+||++.|++++.++  .|++||+++++.. .+..+...+.++.|+|++++|++++.++.+.+|+.++++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            6899999999999999998877654  7999999998765 445677789999999999999999999999999999998


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEe----------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEE
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSS----------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~----------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ....+..|...+.+++|+|++++++.++          .++.+++||+..... ... ..+...+..+.|+| ++..|++
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~-~~~~~~~~~~~~sp-dg~~l~~  195 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAA-TTENSHDYAPAFDA-DSKNLYY  195 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EEC-SCSSSBEEEEEECT-TSCEEEE
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce-eee-cccccccccccccC-CCCEEEE
Confidence            8888888999999999999999988543          345689999987633 222 23455677788888 6888999


Q ss_pred             EECCCcEEEEeC
Q psy4653         161 ASLDRTVKVWQL  172 (229)
Q Consensus       161 ~~~d~~i~~wd~  172 (229)
                      ++.|+.+++||.
T Consensus       196 ~s~~~~~~~~d~  207 (360)
T d1k32a3         196 LSYRSLDPSPDR  207 (360)
T ss_dssp             EESCCCCCEECS
T ss_pred             EeCCCceEcccc
Confidence            998988888874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-23  Score=161.80  Aligned_cols=151  Identities=13%  Similarity=0.238  Sum_probs=126.9

Q ss_pred             EEEEccCCCeEEEEEecC-eEEEEEcCCCCeEEEEE-ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE-Eec
Q psy4653          20 CCDLHPTEPWMLASLYNG-HVHVWNHETNQNVKSFE-VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH-SFE   96 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~dg-~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~   96 (229)
                      +.+++|++..+++++.++ .|++|++...+....+. .+..++.+++|+|++++|++|+.||.|++||+.+++... .+.
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence            456788888888888765 79999998765544433 345679999999999999999999999999998877544 467


Q ss_pred             cCCCceeEEEEcCC----------CCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          97 AHSDYVRCVAVHPT----------QPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        97 ~h~~~i~~v~~~~~----------~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      .|...|.+++|+|.          +.++++|+.|++|++||+++.......+.+|...|..+.|+| + ..|+|++.|+.
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~-~~l~s~g~D~~  280 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-P-STLVSSGADAC  280 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-T-TEEEEEETTSC
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-C-CEEEEEECCCe
Confidence            89999999999875          458999999999999999876666777789999999999997 3 47999999999


Q ss_pred             EEEEeC
Q psy4653         167 VKVWQL  172 (229)
Q Consensus       167 i~~wd~  172 (229)
                      |++|++
T Consensus       281 v~iW~i  286 (287)
T d1pgua2         281 IKRWNV  286 (287)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=2.4e-23  Score=164.48  Aligned_cols=193  Identities=12%  Similarity=0.082  Sum_probs=154.9

Q ss_pred             EEEEEcc-CCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEe
Q psy4653          19 KCCDLHP-TEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM--QVCVFNYNTLERFHSF   95 (229)
Q Consensus        19 ~~~~~~p-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~   95 (229)
                      .+-+||| ||+.+++++ .|.|.+||+++++.++.  .|...+.++.|+|+|+.|++++.+.  .|.+||.++++. ..+
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~   81 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKF   81 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EEC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEe
Confidence            4568999 898877765 68999999998877654  4677899999999999988766553  689999987654 566


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEE----------CCC
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASAS----------LDR  165 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~  165 (229)
                      ..|...|.+++|+|+++++++++.++.+++|++... .....+..|...+..+.|+| ++.+|+.++          .++
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEE
T ss_pred             eCCCceEEeeeecccccccceecccccccccccccc-ceeeeeecccccccchhhcc-ceeeeeeeccccccceeecccc
Confidence            789999999999999999999999999999999876 44566677888888999998 688887543          445


Q ss_pred             cEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         166 TVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       166 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      .+++||+.+++.. .+..+...+..+.|  ++++++|++++.|+.+++||.....
T Consensus       160 ~~~v~d~~~~~~~-~~~~~~~~~~~~~~--spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         160 AIHVYDMEGRKIF-AATTENSHDYAPAF--DADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             EEEEEETTTTEEE-ECSCSSSBEEEEEE--CTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             ceeeeccccCcee-eecccccccccccc--cCCCCEEEEEeCCCceEcccccccc
Confidence            6899999876543 34445566777777  4567789999999999999976543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1e-21  Score=160.02  Aligned_cols=218  Identities=11%  Similarity=0.119  Sum_probs=152.7

Q ss_pred             hhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEE-----ecCcCeEEEEEcCCCCEEEEE-eCCC
Q psy4653           6 DIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFE-----VCDLPVRAAKFVPRKNWIVTG-SDDM   79 (229)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg-~~d~   79 (229)
                      ++.+++..| ..+..++|+|||+++++++.|+.|++||+.+++.....+     .+...+.++.|+|+|++|+++ ..++
T Consensus        53 ~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~  131 (426)
T d1hzua2          53 KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP  131 (426)
T ss_dssp             SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCC
Confidence            445567766 469999999999999999999999999999988654433     223345677788999986544 5788


Q ss_pred             eEEEEECCCcceEEEec-------------------------------------------------------cCCCceeE
Q psy4653          80 QVCVFNYNTLERFHSFE-------------------------------------------------------AHSDYVRC  104 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~-------------------------------------------------------~h~~~i~~  104 (229)
                      .+++||.++++.+....                                                       .+...+..
T Consensus       132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  211 (426)
T d1hzua2         132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD  211 (426)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEE
T ss_pred             eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEe
Confidence            99999987654332211                                                       11222447


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEecCCcee--------------------------------------------------
Q psy4653         105 VAVHPTQPFLLTSS-DDMLIKLWNWEKAWA--------------------------------------------------  133 (229)
Q Consensus       105 v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~--------------------------------------------------  133 (229)
                      +.|+|++++++++. .+..+.+++......                                                  
T Consensus       212 ~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~  291 (426)
T d1hzua2         212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  291 (426)
T ss_dssp             EEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT
T ss_pred             eeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc
Confidence            88899888776554 445666776543211                                                  


Q ss_pred             ---eeeeeecceeeEEEEEEcCCCCCEEE-------EEECCCcEEEEeCCCCCceEEEe---------cCCCceEEEEEE
Q psy4653         134 ---CQQVFEGHTHYVMQIVINPKDNNTFA-------SASLDRTVKVWQLGSASPNFTLE---------GHEKGVNCVDYY  194 (229)
Q Consensus       134 ---~~~~~~~~~~~v~~~~~~~~~~~~l~-------s~~~d~~i~~wd~~~~~~~~~~~---------~h~~~v~~~~~~  194 (229)
                         ....+++|...+..++++| ++.+++       +++.|++|++||+.+++...++.         .|...+..++|+
T Consensus       292 ~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS  370 (426)
T d1hzua2         292 AWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN  370 (426)
T ss_dssp             BTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC
T ss_pred             cceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEEC
Confidence               1123445666678888998 678888       45678999999999887765542         344567788885


Q ss_pred             eCCCcCEE-EEe----eCCCeEEEEECCCCeEEEeecc
Q psy4653         195 HGGDKPYL-ISG----ADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       195 ~~~~~~~l-~s~----s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                        ++++++ +++    +.|+.|+|||.++++.+..++.
T Consensus       371 --pDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         371 --KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             --SSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             --CCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence              455544 443    4689999999999998887764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.7e-22  Score=156.04  Aligned_cols=169  Identities=11%  Similarity=0.073  Sum_probs=122.3

Q ss_pred             eEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce---EEEeccCCCceeEEEEcCCC-CEEEEEeCCCcEE
Q psy4653          49 NVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER---FHSFEAHSDYVRCVAVHPTQ-PFLLTSSDDMLIK  124 (229)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~~i~~v~~~~~~-~~~~s~~~d~~v~  124 (229)
                      .+...+.|++.|++++|+|++++|++|+.||.|+|||++....   +.....|...|.+++|+|++ .++++|+.|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            4555567888999999999999999999999999999876543   33334699999999999875 4789999999999


Q ss_pred             EEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEE----ecCCC--ceEEEEEEeCCC
Q psy4653         125 LWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTL----EGHEK--GVNCVDYYHGGD  198 (229)
Q Consensus       125 lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~h~~--~v~~~~~~~~~~  198 (229)
                      +|++............+........+.+ +...+++++.|+.+++||++........    ..+..  ......+..  .
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  159 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT--N  159 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE--C
T ss_pred             eeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeec--c
Confidence            9999776443333333333333344444 5689999999999999998654332222    22222  223333332  4


Q ss_pred             cCEEEEeeCCCeEEEEECCCCe
Q psy4653         199 KPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       199 ~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      ...+++++.|+.|++||++..+
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCE  181 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCT
T ss_pred             CCceeeecCCCcEEEEecccCc
Confidence            4579999999999999997654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=4e-20  Score=144.22  Aligned_cols=206  Identities=11%  Similarity=0.071  Sum_probs=152.7

Q ss_pred             cCCCceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecC-----cCeEEEEEcCCCCEEEEEe----------
Q psy4653          13 ARSDRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCD-----LPVRAAKFVPRKNWIVTGS----------   76 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~----------   76 (229)
                      .+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+....     .....+.|+|++++++++.          
T Consensus        31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence            3445678999999999885 45689999999999999988876543     2356789999999988776          


Q ss_pred             --CCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeee-----------------
Q psy4653          77 --DDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQV-----------------  137 (229)
Q Consensus        77 --~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~-----------------  137 (229)
                        .+..+.+||..+++....+.. ...+.+++|+|+++++++++.  .+.+||..........                 
T Consensus       111 ~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             cccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcce
Confidence              457888999999888777764 456889999999999998865  4667876543211100                 


Q ss_pred             ------------------------------------------------eecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653         138 ------------------------------------------------FEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus       138 ------------------------------------------------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                                                                      +..+...+....++| ++.+++.+  ++.|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v  264 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLES  264 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEE
Confidence                                                            001112223344554 44555443  578999


Q ss_pred             EeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         170 WQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       170 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ||+.+++.+..+. +...+.+++|  ++++.+|++++.|++|++||.++++.+.+++.
T Consensus       265 ~d~~~~~~~~~~~-~~~~~~~~~~--s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         265 FDLEKNASIKRVP-LPHSYYSVNV--STDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EETTTTEEEEEEE-CSSCCCEEEE--CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCcEEEEEc-CCCCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9999998887775 4556788998  45677899999999999999999999988764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=4.6e-19  Score=136.27  Aligned_cols=214  Identities=12%  Similarity=0.084  Sum_probs=155.4

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEE-EEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEE
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLA-SLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVF   84 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iw   84 (229)
                      +.+.+.. ......++|+|+|++|++ +..++.|.+||+.+++.+..+..+. ....+.|+++++.+ +++..++.+.+|
T Consensus        24 ~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (301)
T d1l0qa2          24 VTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI  101 (301)
T ss_dssp             EEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeec
Confidence            3344442 356789999999998865 5578999999999999988887665 57889999999855 555667789999


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeee------------------------
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFE------------------------  139 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~------------------------  139 (229)
                      +..+++....+..+ ....++.|+|++..++ ++..++.+.+|+............                        
T Consensus       102 ~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         102 DTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             ETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccc
Confidence            99998887777644 5678899999998764 556678889998765422111000                        


Q ss_pred             ----------------cceeeEEEEEEcCCCCCEEEEEE---CCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC
Q psy4653         140 ----------------GHTHYVMQIVINPKDNNTFASAS---LDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP  200 (229)
Q Consensus       140 ----------------~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  200 (229)
                                      .....+..+.+++ ++..++.++   .++.|++||..+++.+..+..+ ..+.+++|.  ++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~s--pdg~  256 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVT--PDGK  256 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEEC--TTSS
T ss_pred             ccccccccceeeeecccccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEe--CCCC
Confidence                            0011234556666 455554433   3468999999998877777654 357888984  4555


Q ss_pred             EE-EEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         201 YL-ISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       201 ~l-~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +| ++++.|++|++||+++++.+.+++-
T Consensus       257 ~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         257 KVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            55 6888899999999999999998864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=7e-20  Score=143.36  Aligned_cols=203  Identities=11%  Similarity=0.113  Sum_probs=143.6

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccC
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAH   98 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h   98 (229)
                      ++|+++++++++++.|++|.+||+.+++.+..++.. .....++.|+|+|+++ +++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            478999999999999999999999999999888753 4467899999999976 56667899999999998887665432


Q ss_pred             C------CceeEEEEcCCCCEEEEEe------------CCCcEEEEecCCceee--------------------------
Q psy4653          99 S------DYVRCVAVHPTQPFLLTSS------------DDMLIKLWNWEKAWAC--------------------------  134 (229)
Q Consensus        99 ~------~~i~~v~~~~~~~~~~s~~------------~d~~v~lwd~~~~~~~--------------------------  134 (229)
                      .      ..+..++|+|+++++++++            .+..+.+|+.......                          
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      2345788888888776553            3455666654321000                          


Q ss_pred             --------------eeee--------------------------------------------------------------
Q psy4653         135 --------------QQVF--------------------------------------------------------------  138 (229)
Q Consensus       135 --------------~~~~--------------------------------------------------------------  138 (229)
                                    ...+                                                              
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence                          0000                                                              


Q ss_pred             ------ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEE
Q psy4653         139 ------EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVK  212 (229)
Q Consensus       139 ------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~  212 (229)
                            ..+...+....+++. +..+++.. ++.+.+||..+++.+..+. +...+.+++|+  +++.+|++++.|+.|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s--~DG~~l~v~~~d~~v~  316 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPK-DPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFD--KKGDKLYLGGTFNDLA  316 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSS-CTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC--SSSSCEEEESBSSEEE
T ss_pred             eEEEEeecccceeEEEEEeCC-CCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEc--CCCCEEEEEeCCCcEE
Confidence                  001111223333442 33444444 4579999999888777665 33468889984  4667899999999999


Q ss_pred             EEECCCCeEEEeeccC
Q psy4653         213 IWDYQNKTCVQTLESG  228 (229)
Q Consensus       213 iwd~~~~~~~~~~~~~  228 (229)
                      +||.++++.+++++.+
T Consensus       317 v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         317 VFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEETTTTEEEEEEECS
T ss_pred             EEECccCCEEEEEECC
Confidence            9999999999998754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.4e-19  Score=147.75  Aligned_cols=194  Identities=9%  Similarity=0.020  Sum_probs=145.3

Q ss_pred             EEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEE---eccCCCceeE
Q psy4653          30 MLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLER--FHS---FEAHSDYVRC  104 (229)
Q Consensus        30 l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--~~~---~~~h~~~i~~  104 (229)
                      +++.+.||+|.+||..+++.+..+..+. .+..+.|+|+|++|++++.|+.+.+||+++++.  +..   ...|...+.+
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            4566789999999999999999998764 699999999999999999999999999987653  222   2355666777


Q ss_pred             EEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecc-----------eeeEEEEEEcCCCCCEEEEEECCCcEEEEeC
Q psy4653         105 VAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGH-----------THYVMQIVINPKDNNTFASASLDRTVKVWQL  172 (229)
Q Consensus       105 v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~  172 (229)
                      ..|+||++++ ++++.+++|++||...... ...+..+           .+....+.++|....++++...++.|.+||.
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            7889999976 6788899999999987643 3333322           2334567778744444567778899999999


Q ss_pred             CCCCceEEEe-cCCCceEEEEEEeCCCcCEEEEee-CCCeEEEEECCCCeEEEeecc
Q psy4653         173 GSASPNFTLE-GHEKGVNCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       173 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ...+...... .+...+..++|.  ++++++++++ .++.+.++|.++++.+..+..
T Consensus       193 ~~~~~~~~~~i~~g~~~~~~~~s--pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         193 TDLNNLKTTEISAERFLHDGGLD--GSHRYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             TCSSEEEEEEEECCSSEEEEEEC--TTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             cCCCcceEEEEcccCccccceEC--CCCCEEEEeccccceEEEeecccceEEEEecc
Confidence            8766443332 334567788884  4566665555 567899999999988877654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=1.2e-18  Score=141.67  Aligned_cols=200  Identities=9%  Similarity=0.063  Sum_probs=137.2

Q ss_pred             EccCCC--eEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE--E---e
Q psy4653          23 LHPTEP--WMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH--S---F   95 (229)
Q Consensus        23 ~~p~~~--~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~--~---~   95 (229)
                      +.++..  ++++...||+|++||+.+++.+..+..+. .+..+.|+|+|++|++++.|+.+++||+++++...  .   .
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            444433  34556689999999999999999998764 68999999999999999999999999999876432  2   2


Q ss_pred             ccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecceeeE-----------EEEEEcCCCCCEEEE-EE
Q psy4653          96 EAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYV-----------MQIVINPKDNNTFAS-AS  162 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~l~s-~~  162 (229)
                      .+|...+.+++|+|++++++ ++..++.+++||..... +.....+|...+           ..+..++ ++..++. ..
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~  182 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVK  182 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEET
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecC
Confidence            35666677888999999865 55688999999987763 333444443322           3344444 2333332 23


Q ss_pred             CCCcEEEEeCCCCCce-EEEecCCCceEEEEEEeCCCcCEEEEe-eCCCeEEEEECCCCeEEEeecc
Q psy4653         163 LDRTVKVWQLGSASPN-FTLEGHEKGVNCVDYYHGGDKPYLISG-ADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       163 ~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ..+.+.+++......+ ....++...+..++|.+  ++++++++ ..+..+.+++..+++.+...+.
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS--SHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT--TSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEEeccccceeeEEeccCCccEeeeECC--CCcEEEeeeecccceeeeecccccEEEEecc
Confidence            3445555555443322 22335566677788743  44555554 4677899999999998877654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.6e-17  Score=134.18  Aligned_cols=210  Identities=10%  Similarity=0.026  Sum_probs=143.9

Q ss_pred             chhhhhcccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEE--EEE---ecCcCeEEEEEcCCCCEE-EEEeCC
Q psy4653           5 LDIKRKLTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVK--SFE---VCDLPVRAAKFVPRKNWI-VTGSDD   78 (229)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~l-~sg~~d   78 (229)
                      .++.+.+..+ ..+..++|+|||+++++++.||.|.+||+.+++...  .++   .+...+.+..|+|+|++| ++++.+
T Consensus        52 ~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~  130 (432)
T d1qksa2          52 YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP  130 (432)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC
Confidence            3455667665 469999999999999999999999999999876432  222   223345566778899975 778889


Q ss_pred             CeEEEEECCCcceEEEeccC-----------CCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeecceeeEE
Q psy4653          79 MQVCVFNYNTLERFHSFEAH-----------SDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEGHTHYVM  146 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~h-----------~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~  146 (229)
                      +.|++||.++++.+..+..|           ......+.++|++..+ ++...++.|.+||...........-.+.....
T Consensus       131 ~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~  210 (432)
T d1qksa2         131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  210 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc
Confidence            99999999999887766543           3446688999999876 56677899999998765432222223344577


Q ss_pred             EEEEcCCCCCEEEEEE-CCCcEEEEeCCCCCceEEEec-----CCCceEEEEEEeCCCcCEEEEe-eCCCeEEEEECCC
Q psy4653         147 QIVINPKDNNTFASAS-LDRTVKVWQLGSASPNFTLEG-----HEKGVNCVDYYHGGDKPYLISG-ADDRLVKIWDYQN  218 (229)
Q Consensus       147 ~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~-s~d~~i~iwd~~~  218 (229)
                      .+.++| ++.++++++ .+..+.++|..+.+....+..     |........+  ...+....+. ..|+.|.+|+..+
T Consensus       211 ~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         211 DGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH--PTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             EEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE--TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cceECC-CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceec--CCCCceecccccCCceEEeccccc
Confidence            899998 677666555 566888999987766555432     2222222222  2233333333 2477888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=3.3e-16  Score=124.10  Aligned_cols=214  Identities=11%  Similarity=0.014  Sum_probs=146.0

Q ss_pred             cccCCCceEEEEEccCCCeEEEEE-----ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe---------
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASL-----YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS---------   76 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~-----~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---------   76 (229)
                      ...+..++..++++|+++.+++..     ..+.|.+||..+++.+..+..+..  ..+.|+|+|++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccccc
Confidence            346778999999999999987752     346799999999999988775543  3789999999998875         


Q ss_pred             -CCCeEEEEECCCcceEEEeccCC-----------------------------------------------CceeEEEEc
Q psy4653          77 -DDMQVCVFNYNTLERFHSFEAHS-----------------------------------------------DYVRCVAVH  108 (229)
Q Consensus        77 -~d~~i~iwd~~~~~~~~~~~~h~-----------------------------------------------~~i~~v~~~  108 (229)
                       .++.|.+||..+++.+..+..+.                                               ....++.++
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  173 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIH  173 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEe
Confidence             35789999998876543322111                                               112366777


Q ss_pred             CCCCE-EEEEeCCCcEEEEecCCceeeeee-------------------------eecceeeE-----------------
Q psy4653         109 PTQPF-LLTSSDDMLIKLWNWEKAWACQQV-------------------------FEGHTHYV-----------------  145 (229)
Q Consensus       109 ~~~~~-~~s~~~d~~v~lwd~~~~~~~~~~-------------------------~~~~~~~v-----------------  145 (229)
                      |+++. +++.+.|+++.+|+..........                         .......+                 
T Consensus       174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  253 (373)
T d2madh_         174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID  253 (373)
T ss_pred             cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeec
Confidence            87764 468888999999997543221100                         00000000                 


Q ss_pred             ----------------EEEEEcC---------CCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC
Q psy4653         146 ----------------MQIVINP---------KDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP  200 (229)
Q Consensus       146 ----------------~~~~~~~---------~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  200 (229)
                                      ..+.+++         ..+..+++...++.+.+||..+++.+..+. +...+..++|.+.+..-
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~  332 (373)
T d2madh_         254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPD  332 (373)
T ss_pred             cccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEE
Confidence                            0111111         122344556677889999999988877665 44568888985543322


Q ss_pred             EEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         201 YLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       201 ~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++++++.|++|++||+.+++.++++..
T Consensus       333 l~vt~~~d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         333 LYALSAGTEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             EEEEeCCCCeEEEEECCCCCEEEEECC
Confidence            457899999999999999999999874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.77  E-value=4.3e-16  Score=119.34  Aligned_cols=189  Identities=14%  Similarity=0.146  Sum_probs=142.9

Q ss_pred             EEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcC
Q psy4653          31 LASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP  109 (229)
Q Consensus        31 ~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~  109 (229)
                      ++++.|++|.+||+.+++.+..+.... ....+.|+|+|++| ++++.++.|.+||+++++.+..+..+. ....+.|++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            345689999999999999988887554 57889999999977 567788999999999999988887765 468999999


Q ss_pred             CCCEEE-EEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCce
Q psy4653         110 TQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV  188 (229)
Q Consensus       110 ~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v  188 (229)
                      ++..++ ++..++.+.+|+...... ...+..+ .....+.++|....+++++..+..+.+|+..+......+..+ ..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  160 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTV-AGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP  160 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEE-EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred             ccccccccccccceeeeccccccee-eeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence            998654 566778999999987643 3333333 446778888854444556678899999999988877777654 346


Q ss_pred             EEEEEEeCCCcCEEEEee-CCCeEEEEECCCCeEEEeec
Q psy4653         189 NCVDYYHGGDKPYLISGA-DDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       189 ~~~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~  226 (229)
                      ..+.+.  ++...++++. .++.+.+|+....+....+.
T Consensus       161 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (301)
T d1l0qa2         161 KGIAVT--PDGTKVYVANFDSMSISVIDTVTNSVIDTVK  197 (301)
T ss_dssp             EEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eEEEee--ccccceeeecccccccccccccceeeeeccc
Confidence            777774  3444555554 56778899988887766654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.7e-16  Score=123.30  Aligned_cols=144  Identities=13%  Similarity=0.129  Sum_probs=110.5

Q ss_pred             CeEEEEEecCeEEEEEcCCCCeEEEEEecC--cCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCcceEEEeccCCC----
Q psy4653          28 PWMLASLYNGHVHVWNHETNQNVKSFEVCD--LPVRAAKFVPRKNWI-VTGSDDMQVCVFNYNTLERFHSFEAHSD----  100 (229)
Q Consensus        28 ~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~----  100 (229)
                      .++++++.|++|.+||+.+++.+..+....  ..+.++.|+|+|+++ ++++.++.|.+||+++++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            478999999999999999999998887643  357889999999986 5777899999999999998887765543    


Q ss_pred             -ceeEEEEcCCCCEEEEEe------------CCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653         101 -YVRCVAVHPTQPFLLTSS------------DDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus       101 -~i~~v~~~~~~~~~~s~~------------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                       .+..++|+|++++++++.            .+..+.+||...... ...+.. ...+..+.++| ++.++++++.  .+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWAR-DGSKLYGLGR--DL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECT-TSSCEEEESS--SE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEeccc-cCCceEEEEcC-CCCEEEEEcC--Cc
Confidence             345899999999887775            456788888876633 333332 34466788888 6778877764  46


Q ss_pred             EEEeCCCCC
Q psy4653         168 KVWQLGSAS  176 (229)
Q Consensus       168 ~~wd~~~~~  176 (229)
                      .+||..+++
T Consensus       157 ~~~d~~~~~  165 (337)
T d1pbyb_         157 HVMDPEAGT  165 (337)
T ss_dssp             EEEETTTTE
T ss_pred             ceeeeecCc
Confidence            778876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.3e-16  Score=125.52  Aligned_cols=214  Identities=10%  Similarity=-0.011  Sum_probs=142.6

Q ss_pred             hcccCCCceEEEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEecCc-------CeEEEEEcCCCCEE
Q psy4653          10 KLTARSDRVKCCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVCDL-------PVRAAKFVPRKNWI   72 (229)
Q Consensus        10 ~~~~~~~~v~~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l   72 (229)
                      ++..+..  ..++|+||++.|++.+          .|+.|.+||+.+++.+..+.....       ....+.|+|+++.+
T Consensus        43 ~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  120 (355)
T d2bbkh_          43 MIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL  120 (355)
T ss_dssp             EEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEE
T ss_pred             EEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCee
Confidence            3444433  3689999999887643          478999999999998887664432       23567899999987


Q ss_pred             EEEe--CCCeEEEEECCCcceEEEeccCC---------------------------------------------CceeEE
Q psy4653          73 VTGS--DDMQVCVFNYNTLERFHSFEAHS---------------------------------------------DYVRCV  105 (229)
Q Consensus        73 ~sg~--~d~~i~iwd~~~~~~~~~~~~h~---------------------------------------------~~i~~v  105 (229)
                      +.++  .+..+.+|+..+++.+..+..+.                                             ..+...
T Consensus       121 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (355)
T d2bbkh_         121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP  200 (355)
T ss_dssp             EEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCC
T ss_pred             EEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeec
Confidence            7765  45678999998876554332211                                             012234


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCceee-eeeeecc----------eeeEEEEEEcCCCCCEEEEEECC----------
Q psy4653         106 AVHPTQPFLLTSSDDMLIKLWNWEKAWAC-QQVFEGH----------THYVMQIVINPKDNNTFASASLD----------  164 (229)
Q Consensus       106 ~~~~~~~~~~s~~~d~~v~lwd~~~~~~~-~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~~d----------  164 (229)
                      .+.+++..++.++.++.+++|++..+... ......+          ......+.+++ ++..++....+          
T Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCE
T ss_pred             cccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCceeecCCC
Confidence            55555667778888999999998754321 1111111          11123456666 45555444332          


Q ss_pred             CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ..|.+||..+++.+..+..+ ..+.+++|.+.+..-++++++.|++|++||.++++.++++..
T Consensus       280 ~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            36999999998887777543 357788886543322566788899999999999999999874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.3e-15  Score=116.04  Aligned_cols=213  Identities=12%  Similarity=0.134  Sum_probs=137.1

Q ss_pred             ccCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEE---ecCcCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q psy4653          12 TARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFE---VCDLPVRAAKFVPRKNWIVTGSD-DMQVCVFNY   86 (229)
Q Consensus        12 ~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~-d~~i~iwd~   86 (229)
                      ..|...|..++|+|||++|++++ .|+.|++|++........+.   ........+.|+|+|++|++++. ++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            35788999999999999997766 58999999998765433322   23345678999999999888875 668999987


Q ss_pred             CCcceE--EEeccCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeee-----------------ee-------
Q psy4653          87 NTLERF--HSFEAHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEKAWACQQV-----------------FE-------  139 (229)
Q Consensus        87 ~~~~~~--~~~~~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~~~~-----------------~~-------  139 (229)
                      ......  .....+...+.++.++|++++++.++. +..+.+|+..........                 +.       
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            655432  233445667788899999988776654 456888876432111000                 00       


Q ss_pred             ----------------------------------cceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec--
Q psy4653         140 ----------------------------------GHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG--  183 (229)
Q Consensus       140 ----------------------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--  183 (229)
                                                        ........+.+++....+++++..++.+.+|++........+..  
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence                                              00012234456663333455556778899998876544433332  


Q ss_pred             -CCCceEEEEEEeCCCcCEEEEe-eCCCeEEEE--ECCCCeE--EEeec
Q psy4653         184 -HEKGVNCVDYYHGGDKPYLISG-ADDRLVKIW--DYQNKTC--VQTLE  226 (229)
Q Consensus       184 -h~~~v~~~~~~~~~~~~~l~s~-s~d~~i~iw--d~~~~~~--~~~~~  226 (229)
                       ....+..++|.  +++++|+++ +.++.|++|  |.++|+.  +.++.
T Consensus       273 ~~~~~p~~~a~s--pDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~  319 (333)
T d1ri6a_         273 PTETQPRGFNVD--HSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA  319 (333)
T ss_dssp             ECSSSCCCEEEC--TTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCCeeEEEEe--CCCCEEEEEECCCCeEEEEEEECCCCcEEEEEecc
Confidence             33446678884  566666554 567999999  5567753  44444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1e-13  Score=107.46  Aligned_cols=187  Identities=13%  Similarity=0.170  Sum_probs=125.0

Q ss_pred             eEEEEEecCeEEEEEcCCCCeEEEE--EecCcCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCcceEEEe---ccCCCce
Q psy4653          29 WMLASLYNGHVHVWNHETNQNVKSF--EVCDLPVRAAKFVPRKNWIVT-GSDDMQVCVFNYNTLERFHSF---EAHSDYV  102 (229)
Q Consensus        29 ~l~~~~~dg~v~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~~~~~~~---~~h~~~i  102 (229)
                      .++++..|++|++||+.+...+..+  ..+...+..+.|+|+|++|++ +..|+.|.+|++........+   ..+....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4567779999999999765443333  245678999999999998854 455899999998765432222   2234557


Q ss_pred             eEEEEcCCCCEEEEEeC-CCcEEEEecCCceeee-eeeecceeeEEEEEEcCCCCCEEEEEE-CCCcEEEEeCCCCCceE
Q psy4653         103 RCVAVHPTQPFLLTSSD-DMLIKLWNWEKAWACQ-QVFEGHTHYVMQIVINPKDNNTFASAS-LDRTVKVWQLGSASPNF  179 (229)
Q Consensus       103 ~~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~  179 (229)
                      ..++|+|+++++++++. +++|.+|+........ .....+...+..+.++| ++.+++.++ .+..|.+|+........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcce
Confidence            78999999999888875 6789999876553322 22233445567788888 566666665 56679999987654332


Q ss_pred             EE------ecCCCceEEEEEEeCCCcCEE-EEeeCCCeEEEEECCC
Q psy4653         180 TL------EGHEKGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQN  218 (229)
Q Consensus       180 ~~------~~h~~~v~~~~~~~~~~~~~l-~s~s~d~~i~iwd~~~  218 (229)
                      ..      .........++|.+  ++.++ .+....+...+|++..
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~--~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHP--NEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEESSC
T ss_pred             eeeceeeeeecCCCccEEEEec--cceeEEeeccccCceEEEeecc
Confidence            21      12233456777743  33344 4455677788888643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=4.2e-14  Score=112.15  Aligned_cols=215  Identities=7%  Similarity=-0.034  Sum_probs=129.6

Q ss_pred             cccCCCceEEEEEccCCCeEEEEE----------ecCeEEEEEcCCCCeEEEEEecCc-------CeEEEEEcCCCCEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASL----------YNGHVHVWNHETNQNVKSFEVCDL-------PVRAAKFVPRKNWIV   73 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~   73 (229)
                      +.++..+  .+.|+||++.+++..          .|+.|.+||..+++.+..+.....       ....+.|+|+|++|+
T Consensus        62 ~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          62 SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEE
T ss_pred             EeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEE
Confidence            3444433  578999999888764          478899999999999888765422       234689999999888


Q ss_pred             EEe-CCCeEEEEECCCcceEEEeccCCCc-------eeEEEEcCCCCEEEEEeCCCc-----------------------
Q psy4653          74 TGS-DDMQVCVFNYNTLERFHSFEAHSDY-------VRCVAVHPTQPFLLTSSDDML-----------------------  122 (229)
Q Consensus        74 sg~-~d~~i~iwd~~~~~~~~~~~~h~~~-------i~~v~~~~~~~~~~s~~~d~~-----------------------  122 (229)
                      +++ .++.+.+||+.+++.+..+..+...       ...+.+++++..++....+..                       
T Consensus       140 va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA  219 (368)
T ss_dssp             EEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEE
T ss_pred             EEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccc
Confidence            776 5689999999998887766544321       122344444443332222221                       


Q ss_pred             -------------EEEEecCCceee-eeeeecc----------eeeEEEEEEcCCCCCEEEEEECC--------CcEEEE
Q psy4653         123 -------------IKLWNWEKAWAC-QQVFEGH----------THYVMQIVINPKDNNTFASASLD--------RTVKVW  170 (229)
Q Consensus       123 -------------v~lwd~~~~~~~-~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~w  170 (229)
                                   +.++++...... ......+          ......+.+++..+.+++....+        .+|.+|
T Consensus       220 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~  299 (368)
T d1mdah_         220 NYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             ccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE
Confidence                         111221111000 0000000          00011234455333333322222        258899


Q ss_pred             eCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         171 QLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       171 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      |..+++.+..+... ..+..++|.+.++..++++++.|++|++||..+++.+++++.+
T Consensus       300 D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         300 TASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             ESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            99998877766533 3577788865433224567788999999999999999998854

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.54  E-value=9e-14  Score=107.98  Aligned_cols=160  Identities=8%  Similarity=0.020  Sum_probs=112.7

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc-CCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeeeec
Q psy4653          63 AKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA-HSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVFEG  140 (229)
Q Consensus        63 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~~~  140 (229)
                      ++|++++++|++++.+++|.+||+++++.++.++. |.....+++|+|+++++ ++++.++.|.+||+............
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            35788999999999999999999999999888764 45667899999999986 56667899999999877543332211


Q ss_pred             -----ceeeEEEEEEcCCCCCEEEEEE------------CCCcEEEEeCCCCCceEEEecC--CCceEEEEEEeCCCcCE
Q psy4653         141 -----HTHYVMQIVINPKDNNTFASAS------------LDRTVKVWQLGSASPNFTLEGH--EKGVNCVDYYHGGDKPY  201 (229)
Q Consensus       141 -----~~~~v~~~~~~~~~~~~l~s~~------------~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~  201 (229)
                           +...+..+.++| ++.+++.++            .+..+.+||..+++....+..+  ...+..+.+  ++++.+
T Consensus        82 ~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA--ADDGSL  158 (346)
T ss_dssp             CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE--CTTSCE
T ss_pred             ccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEe--cCCCEE
Confidence                 122345678888 677766554            5778899998776554433322  223343443  344444


Q ss_pred             EEEeeCCCeEEEEECCCCeEEEeeccC
Q psy4653         202 LISGADDRLVKIWDYQNKTCVQTLESG  228 (229)
Q Consensus       202 l~s~s~d~~i~iwd~~~~~~~~~~~~~  228 (229)
                      +++ +  +.+.+|+..+++.+.++..+
T Consensus       159 ~~~-~--~~~~~~~~~~~~~~~~~~~~  182 (346)
T d1jmxb_         159 YVA-G--PDIYKMDVKTGKYTVALPLR  182 (346)
T ss_dssp             EEE-S--SSEEEECTTTCCEEEEECST
T ss_pred             EEe-C--CcceEEEccCCCEEEEEecC
Confidence            443 2  45899999999988887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=2.8e-12  Score=100.21  Aligned_cols=196  Identities=15%  Similarity=0.080  Sum_probs=128.3

Q ss_pred             ceEEEEEccCCCeEEEEE-----ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEE----------eCCCeE
Q psy4653          17 RVKCCDLHPTEPWMLASL-----YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTG----------SDDMQV   81 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~-----~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg----------~~d~~i   81 (229)
                      |+...+.+|+++.+++..     .++.|.+||..+++.+..+.....+  .+.|+|+|++|++.          ..|+.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            445556789999988764     3567999999999998888766544  68999999988764          347899


Q ss_pred             EEEECCCcceEEEeccCCC-------ceeEEEEcCCCCEEEEE--eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcC
Q psy4653          82 CVFNYNTLERFHSFEAHSD-------YVRCVAVHPTQPFLLTS--SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINP  152 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~~-------~i~~v~~~~~~~~~~s~--~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~  152 (229)
                      ++||.++++.+..+..+..       ....+.|+|++..++.+  +.+..+.+|+......... +..+....  ..  +
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~--~  155 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM-LDVPDCYH--IF--P  155 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCSEEE--EE--E
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeE-EecCCcce--Ee--e
Confidence            9999999988776654322       23568999999987665  4567899999987644333 22222111  11  1


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCceEEEe------cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         153 KDNNTFASASLDRTVKVWQLGSASPNFTLE------GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       153 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      .....+++.+.|+...++............      .+...+....+.  .+...++.++.++.+++|+...++.
T Consensus       156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS--QKAGRLVWPTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE--TTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred             cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeecccc--CCCCeEEEecCCCeEEEEecCCCcE
Confidence            123344455666666666544332222221      222234444553  2344678889999999999987753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.37  E-value=2.2e-10  Score=89.92  Aligned_cols=178  Identities=12%  Similarity=0.064  Sum_probs=120.9

Q ss_pred             cCCCceEEEEEccCCCeEE-EEEecCeEEEEEcCCCCeEEEEEecC------cCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          13 ARSDRVKCCDLHPTEPWML-ASLYNGHVHVWNHETNQNVKSFEVCD------LPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+.....++.|+|+++.++ +.+.|+.+.+||..+++.........      .......+.+++. ++..+.++.+.+|+
T Consensus       162 ~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~  240 (373)
T d2madh_         162 QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQAD  240 (373)
T ss_pred             EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEE
Confidence            4445667889999998765 56789999999999987766554321      1133444555554 44556788899998


Q ss_pred             CCCcceE--EEeccCC----------CceeEEEEcCCCC----------EEEEEeCCCcEEEEecCCceeeeeeeeccee
Q psy4653          86 YNTLERF--HSFEAHS----------DYVRCVAVHPTQP----------FLLTSSDDMLIKLWNWEKAWACQQVFEGHTH  143 (229)
Q Consensus        86 ~~~~~~~--~~~~~h~----------~~i~~v~~~~~~~----------~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~  143 (229)
                      .......  .....+.          .....+++++++.          .+++...++.+.+||+..+.....+  .+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~--~~~~  318 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI--SLGH  318 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe--cCCC
Confidence            8765432  1111111          1223345555544          3455666788999999877544433  2445


Q ss_pred             eEEEEEEcCCCCC--EEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEE
Q psy4653         144 YVMQIVINPKDNN--TFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYY  194 (229)
Q Consensus       144 ~v~~~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  194 (229)
                      .+..+.|+| |++  ++++++.|+.|++||+.+++.+.++..+......+++.
T Consensus       319 ~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         319 DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             CeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            678899998 566  45788999999999999999999998877777777764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=9.4e-11  Score=95.43  Aligned_cols=112  Identities=9%  Similarity=0.039  Sum_probs=86.3

Q ss_pred             hhhhcccCCCceEEEEEccCCCeEEEEEe---------cCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC
Q psy4653           7 IKRKLTARSDRVKCCDLHPTEPWMLASLY---------NGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD   77 (229)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~   77 (229)
                      ...++..|...|.+..||||++.|+.++.         ++.+.+||+.+++. ..+..+...+..+.|+|+|+.||.. .
T Consensus        53 ~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~  130 (470)
T d2bgra1          53 ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-W  130 (470)
T ss_dssp             CTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-E
T ss_pred             chhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-e
Confidence            34567788889999999999999988753         57889999999765 4456667789999999999999886 5


Q ss_pred             CCeEEEEECCCcceEEEeccC------------------CCceeEEEEcCCCCEEEEEeCC
Q psy4653          78 DMQVCVFNYNTLERFHSFEAH------------------SDYVRCVAVHPTQPFLLTSSDD  120 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h------------------~~~i~~v~~~~~~~~~~s~~~d  120 (229)
                      ++.+.+|+..+++..+....+                  .+....+.|+|+++.++....|
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            678999998887665433211                  1234578899999998876544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.28  E-value=3.7e-11  Score=97.90  Aligned_cols=148  Identities=12%  Similarity=0.095  Sum_probs=108.7

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec-----CcCeEEEEEcCCCCEEEEEeC---------CCeEEEE
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC-----DLPVRAAKFVPRKNWIVTGSD---------DMQVCVF   84 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~sg~~---------d~~i~iw   84 (229)
                      ..+.|.+++.++.  ..|+.+.+||+.+++....+..+     ...+.++.|+|++++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            4578999997664  45789999999999886655433     356899999999999988754         4678899


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-----------------ceeeEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-----------------HTHYVMQ  147 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-----------------~~~~v~~  147 (229)
                      |+++++ +..+..+.+.+..+.|||+|+.++.. .++.+.+|+...+........+                 ..+....
T Consensus        98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            999875 45677888899999999999998875 4678999998766433222111                 1122345


Q ss_pred             EEEcCCCCCEEEEEECCCc-EEEEe
Q psy4653         148 IVINPKDNNTFASASLDRT-VKVWQ  171 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~-i~~wd  171 (229)
                      +.|+| ++..|+....|.+ +..|.
T Consensus       176 ~~wSP-DGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         176 LWWSP-NGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EEECT-TSSEEEEEEEECTTCCEEE
T ss_pred             cEECC-CCCccceeEecCCcCceEE
Confidence            77998 7889888775533 44443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.16  E-value=5e-09  Score=84.06  Aligned_cols=199  Identities=10%  Similarity=0.078  Sum_probs=131.0

Q ss_pred             cCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEe-cCcCeEEEEEcCCCC--EEEEEeCCC---------
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEV-CDLPVRAAKFVPRKN--WIVTGSDDM---------   79 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~l~sg~~d~---------   79 (229)
                      .|...+....+.|||++|++.. .++.|.++|+.+++....... .......+.|+|+++  +++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            4556677778899999998875 688999999999988776654 245689999999998  555555443         


Q ss_pred             --------eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC------------------------------
Q psy4653          80 --------QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM------------------------------  121 (229)
Q Consensus        80 --------~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~------------------------------  121 (229)
                              .+..+|.++++...+.... .....++++|+++++++++.+.                              
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    2355788888877666544 3467899999999888776542                              


Q ss_pred             -----------cEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEE-EEEECCCcEEEEeCCCCC--------ceEEE
Q psy4653         122 -----------LIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTF-ASASLDRTVKVWQLGSAS--------PNFTL  181 (229)
Q Consensus       122 -----------~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~--------~~~~~  181 (229)
                                 .+.+++..... .......... ...+.++| ++.++ +++..++++.+||+..-.        ....+
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~-v~~~IPvgks-PhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESE-FTRYIPVPKN-PHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCS-SEEEECCBSS-CCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             CCCEEEeCCCCcEEEEcccCCc-eEEEEeCCCC-ccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence                       22233322221 1122222222 35678888 56765 567799999999985421        11122


Q ss_pred             ecCCC---ceEEEEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         182 EGHEK---GVNCVDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       182 ~~h~~---~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      .++..   .....+|  .+++..+.|.+.|..|.-|++.
T Consensus       305 ~~~~~~glgplh~~f--d~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         305 VAEPELGLGPLHTTF--DGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECCBCCSCEEEEEE--CSSSEEEEEETTTTEEEEEEHH
T ss_pred             EeecccccCccccee--cCCceEEEcccccceEEEeccc
Confidence            22211   2233455  4556677888899999999963

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=1.5e-09  Score=85.30  Aligned_cols=157  Identities=13%  Similarity=-0.037  Sum_probs=109.5

Q ss_pred             cCCCceEEEEEccCCCeEEEE---Eec--CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEe----------C
Q psy4653          13 ARSDRVKCCDLHPTEPWMLAS---LYN--GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGS----------D   77 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~---~~d--g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----------~   77 (229)
                      .+..+...++..|+++.....   ..+  ..|.+||..+++.+........+  .+.|+|+|+.|++.+          .
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            345566666778888754332   233  45777899999998887766544  588999999888764          3


Q ss_pred             CCeEEEEECCCcceEEEeccCCCc-------eeEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeeeecceeeEEEEE
Q psy4653          78 DMQVCVFNYNTLERFHSFEAHSDY-------VRCVAVHPTQPFLLTSS-DDMLIKLWNWEKAWACQQVFEGHTHYVMQIV  149 (229)
Q Consensus        78 d~~i~iwd~~~~~~~~~~~~h~~~-------i~~v~~~~~~~~~~s~~-~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~  149 (229)
                      |+.|.+||..+++.+..+..+...       -..++|+|++++++.+. .++.+.+||+...... .....+....    
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~-~~~~~~~~~~----  169 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-QLTKSASCFH----  169 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE-EEEECSSCCC----
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe-EEeeccCcce----
Confidence            677999999999988777554321       23689999999887665 5799999999877443 3333322221    


Q ss_pred             EcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653         150 INPKDNNTFASASLDRTVKVWQLGSAS  176 (229)
Q Consensus       150 ~~~~~~~~l~s~~~d~~i~~wd~~~~~  176 (229)
                      +.|.....++..+.|+++.+++.....
T Consensus       170 ~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         170 IHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             CEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             EccCCCceEEEEcCCCCEEEEEecCCc
Confidence            112234577778889999999876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=9.2e-08  Score=73.12  Aligned_cols=197  Identities=8%  Similarity=-0.009  Sum_probs=131.7

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEe
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLE-RFHSF   95 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~   95 (229)
                      -+..++++|+|+++++...+++|..||.... . ..+........++.|.++|+++++...++.+..++..... ....+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-E-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4788999999998888888999999986643 2 3334445678999999999999998888888887764332 11221


Q ss_pred             --ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeee---------cceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          96 --EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFE---------GHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        96 --~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                        .......+.+.+.+++.++++.+.++.+..+|............         ........+.+.  .+.++++.+..
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~  184 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEK  184 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCC
Confidence              12345678999999999999988889998888765532211111         111223445554  34567777788


Q ss_pred             CcEEEEeCCCCCceEE--EecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         165 RTVKVWQLGSASPNFT--LEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      +.|..++.........  ..........+++  ..++++.++...++.|..++...+
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~--d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAF--DVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCCCSSEEE--BTTCCEEEECBTTCCEEEECTTCC
T ss_pred             CeEEeccccccccccccccccCCCCCcceEE--CCCCCEEEEEcCCCcEEEECCCCC
Confidence            8999888765432221  1111223455677  345667777778888988887654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=3.8e-07  Score=68.78  Aligned_cols=211  Identities=17%  Similarity=0.250  Sum_probs=131.0

Q ss_pred             CccchhhhhcccCCC------ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec-------------------
Q psy4653           2 PLRLDIKRKLTARSD------RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC-------------------   56 (229)
Q Consensus         2 ~~~~~~~~~~~~~~~------~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-------------------   56 (229)
                      |.|+.+.+++.+.-.      .=..+++.|++.++++-.....|++||.+ ++.+..+...                   
T Consensus         3 ~~~~~~~~~~G~~G~~~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~   81 (279)
T d1q7fa_           3 RQRMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS   81 (279)
T ss_dssp             CEEECEEEEECCBSSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT
T ss_pred             cceEEEEeecCCCcCCCCeECCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccc
Confidence            456777777753221      23688999999987777778899999865 3322222100                   


Q ss_pred             -------------------------------CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe--ccCCCcee
Q psy4653          57 -------------------------------DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF--EAHSDYVR  103 (229)
Q Consensus        57 -------------------------------~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--~~h~~~i~  103 (229)
                                                     ......+.+.++++++++....+.+.+++.+ ++.+..+  ..+.....
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             cccceeccCCccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccc
Confidence                                           0112344444555555554444555555543 3334443  23445677


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee--ecceeeEEEEEEcCCCCCEEEEEEC-CCcEEEEeCCCCCceEE
Q psy4653         104 CVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF--EGHTHYVMQIVINPKDNNTFASASL-DRTVKVWQLGSASPNFT  180 (229)
Q Consensus       104 ~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~  180 (229)
                      .+++.+++..+++....+.|++||.... . ...+  .+.......+++.+ ++.++++-.. ++.|.+++. .++.+.+
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~-~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~  236 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYEGQ-Y-LRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISA  236 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETTCC-E-EEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred             eeeeccceeEEeeeccccceeeeecCCc-e-eeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC-CCCEEEE
Confidence            8999999988888888899999997543 2 2222  23444567888988 5778877554 457999985 4555555


Q ss_pred             EecC--CCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeE
Q psy4653         181 LEGH--EKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTC  221 (229)
Q Consensus       181 ~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  221 (229)
                      +...  ......+++.  +++. |+.++.++.|++|.+.+.++
T Consensus       237 ~~~~~~~~~p~~vav~--~dG~-l~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         237 LESKVKHAQCFDVALM--DDGS-VVLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEESSCCSCEEEEEEE--TTTE-EEEEETTTEEEEEECSCCCC
T ss_pred             EeCCCCCCCEeEEEEe--CCCc-EEEEeCCCeEEEEEeeeecC
Confidence            5432  2345677774  3554 45566899999999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.00  E-value=1.2e-08  Score=81.81  Aligned_cols=182  Identities=9%  Similarity=0.066  Sum_probs=115.4

Q ss_pred             EEEEEecCeEEEEEcCCCCeEEEEEecC------------------------------cCeEEEEEcCCCCEEEEE-eCC
Q psy4653          30 MLASLYNGHVHVWNHETNQNVKSFEVCD------------------------------LPVRAAKFVPRKNWIVTG-SDD   78 (229)
Q Consensus        30 l~~~~~dg~v~~wd~~~~~~~~~~~~~~------------------------------~~v~~~~~~~~~~~l~sg-~~d   78 (229)
                      +++|+.+|.|.+|++.+++.++.+....                              .......+.|+|++|.+. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            4556789999999999998887764210                              113334456889988555 567


Q ss_pred             CeEEEEECCCcceEEEecc-CCCceeEEEEcCCCC--EEEEEeCCCcE------------------EEEecCCceeeeee
Q psy4653          79 MQVCVFNYNTLERFHSFEA-HSDYVRCVAVHPTQP--FLLTSSDDMLI------------------KLWNWEKAWACQQV  137 (229)
Q Consensus        79 ~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~~~~~~--~~~s~~~d~~v------------------~lwd~~~~~~~~~~  137 (229)
                      ..|.++|+++++....+.. +......++|+|+++  +++..+++ .+                  ..+|........++
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC-cccccCcccccccccccceEEeecCccceeeEEE
Confidence            7899999999988776543 456789999999988  44444433 33                  23454443322222


Q ss_pred             eecceeeEEEEEEcCCCCCEEEEEECC-----------------------------------------CcEEEEeCCCCC
Q psy4653         138 FEGHTHYVMQIVINPKDNNTFASASLD-----------------------------------------RTVKVWQLGSAS  176 (229)
Q Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~s~~~d-----------------------------------------~~i~~wd~~~~~  176 (229)
                      ..+  +....+.++| ++.+++..+.+                                         +.+.+++.....
T Consensus       173 ~v~--~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         173 IVD--GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EES--SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             ecC--CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            221  2244566777 56666655533                                         344555555455


Q ss_pred             ceEEEecCCCceEEEEEEeCCCcCE-EEEeeCCCeEEEEECCC
Q psy4653         177 PNFTLEGHEKGVNCVDYYHGGDKPY-LISGADDRLVKIWDYQN  218 (229)
Q Consensus       177 ~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~s~d~~i~iwd~~~  218 (229)
                      .++.++.... ...+++  ++++++ ++++..|++|.+||+++
T Consensus       250 v~~~IPvgks-PhGv~v--SPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNT--SPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             SEEEECCBSS-CCCEEE--CTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             eEEEEeCCCC-ccCceE--CCCCCEEEEeCCcCCcEEEEEeeh
Confidence            5566655433 455666  456665 46678899999999865

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.98  E-value=1.1e-06  Score=67.59  Aligned_cols=206  Identities=9%  Similarity=0.061  Sum_probs=130.3

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCcceE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD----MQVCVFNYNTLERF   92 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~~~~~~~   92 (229)
                      .+..+.|.++|+..++-...+.|..||..+++....+.........+.+.++|+++++...+    +.+...+..+....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            45789999999977777788999999998877666554445567899999999988876543    33445555544332


Q ss_pred             EEecc--CCCceeEEEEcCCCCEEEEEeCC------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653          93 HSFEA--HSDYVRCVAVHPTQPFLLTSSDD------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus        93 ~~~~~--h~~~i~~v~~~~~~~~~~s~~~d------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      .....  -....+.+++.++|.+.++....      +.+..++.+.. ....+.. .-.....++|+|....++++-+..
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQ-NISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEE-EESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEee-ccceeeeeeeccccceEEEecccC
Confidence            22221  12356789999999877765332      23444444322 2222221 222346789998433356777788


Q ss_pred             CcEEEEeCCCCC-ceEEE------e-cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         165 RTVKVWQLGSAS-PNFTL------E-GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       165 ~~i~~wd~~~~~-~~~~~------~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      ++|..|++.... .....      . ........+++  ..++++.++....+.|..||- .++.+.++..
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v--D~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI--DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE--BTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeE--cCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence            999999986432 11111      1 11122345666  345667778888999999996 5777777653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=1.3e-07  Score=70.73  Aligned_cols=194  Identities=11%  Similarity=-0.015  Sum_probs=123.3

Q ss_pred             eEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          18 VKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        18 v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      -..++++|++..+++....+.+++++..+...+..... ......+.+.+++++.++-.....+..++............
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            46788999998776666666666666555544333222 23568899999999888776777777777654332221111


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP  177 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  177 (229)
                      .......+++.+++.++++...++.|..+|.+..... ............+++.+ ++.++++....+.|..++......
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~  215 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS  215 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE
Confidence            2234578999999998888888889999997654222 22122334457788887 578888888888888887654432


Q ss_pred             eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEEC
Q psy4653         178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDY  216 (229)
Q Consensus       178 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~  216 (229)
                      .......-.....+++.  +++.++++-..++.|+.++.
T Consensus       216 ~~~~~~~~~~P~~i~~d--~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVD--SDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EECCCCSCCCEEEEEEC--TTCCEEEEEGGGTEEEEECC
T ss_pred             EEEccCCCCCeEEEEEe--CCCCEEEEECCCCEEEEEeC
Confidence            22112222345677774  34556776666676665443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.5e-06  Score=64.46  Aligned_cols=206  Identities=7%  Similarity=-0.009  Sum_probs=117.8

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEec---CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC-CCe--EEEE
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYN---GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD-DMQ--VCVF   84 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-d~~--i~iw   84 (229)
                      +..+...+.+-+|||||+.||-....   ..+.+.+..++.... +...........|+|+|+.++.... ++.  +..+
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-EeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence            33456678899999999999876533   356667777766533 3445567888999999998776554 333  2333


Q ss_pred             ECCCcceEEEeccCCCceeEEEEcCCCCE-EEEEeCCCcEEEE--ecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEE
Q psy4653          85 NYNTLERFHSFEAHSDYVRCVAVHPTQPF-LLTSSDDMLIKLW--NWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        85 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~-~~s~~~d~~v~lw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      ......... ............+++++.. +++...++...+|  ++...  ................|+| ++..++..
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~sp-dg~~~~~~  188 (269)
T d2hqsa1         113 DLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSS-DGKFMVMV  188 (269)
T ss_dssp             ETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECT-TSSEEEEE
T ss_pred             cccccccee-eeeccccccccccccccccceecccccCCceEeeeecccc--cceeeeccccccccccccc-ccceeEEE
Confidence            333332322 2223334455667777664 4455556654444  44433  2222233445566778888 45665554


Q ss_pred             -ECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEee-C--CCeEEEEECCCCeEEE
Q psy4653         162 -SLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGA-D--DRLVKIWDYQNKTCVQ  223 (229)
Q Consensus       162 -~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~--d~~i~iwd~~~~~~~~  223 (229)
                       ...+...+|..........+..+........|+  ++++.|+-.+ .  ...+.++++..+...+
T Consensus       189 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~S--PDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA--PNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC--TTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             eecCCceeeeEeecccccceEeecCccccceEEC--CCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence             455555555544333333444444445556674  4555554333 2  3468899998776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=2.5e-07  Score=69.11  Aligned_cols=196  Identities=8%  Similarity=-0.037  Sum_probs=123.2

Q ss_pred             EEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q psy4653          19 KCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEA   97 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~   97 (229)
                      ..++++++|...++.. ..+.+..++..+................+++.+++++.++....+.+++++......+.... 
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-   95 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-   95 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-
Confidence            6889999999777654 55777777766543322211112245678899999988887776677766555444443332 


Q ss_pred             CCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCc
Q psy4653          98 HSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASP  177 (229)
Q Consensus        98 h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  177 (229)
                      .......+++.+++.++++-.....+..++............+ ......+++++ ++.++++...++.|..+|......
T Consensus        96 ~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          96 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS-CCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeeecccccccccceeEeeccccccccccccccceeeeeeecc-cCCcceeeecC-CCCEeeecccccccccccccccee
Confidence            2245689999999998887777777877776543221211111 22345678887 677888888888999999865433


Q ss_pred             eEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCC
Q psy4653         178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNK  219 (229)
Q Consensus       178 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  219 (229)
                      .............+++.  +++.++++....+.|..++....
T Consensus       174 ~~~~~~~~~~p~gi~~d--~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         174 VVLPFTDITAPWGIAVD--EAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EECCCSSCCSEEEEEEC--TTCCEEEEETTTTEEEEECTTCS
T ss_pred             eeeeccccCCCccceee--eeeeeeeeecCCCEEEEEeCCCC
Confidence            22222334456677773  34567777777888887776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=3.6e-06  Score=64.45  Aligned_cols=194  Identities=9%  Similarity=0.119  Sum_probs=123.7

Q ss_pred             EEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEEEeC---------------CC
Q psy4653          19 KCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVTGSD---------------DM   79 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg~~---------------d~   79 (229)
                      ..+.|.|++..++++...+.+...|..++.........+    .....+.+.++|++.++-..               .|
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G  153 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence            468999999988888777788889987654322211111    12467889999988776432               12


Q ss_pred             eEEEEECCCcceEEEeccCCCceeEEEEcCCCC-----EEEEEeCCCcEEEEecCCceeee--eee---ec-ceeeEEEE
Q psy4653          80 QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQP-----FLLTSSDDMLIKLWNWEKAWACQ--QVF---EG-HTHYVMQI  148 (229)
Q Consensus        80 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~-----~~~s~~~d~~v~lwd~~~~~~~~--~~~---~~-~~~~v~~~  148 (229)
                      .|..++.+ ++. ..+...-..-+.++|+|++.     ++++-+..+.|..||+.......  +++   .+ .....-.+
T Consensus       154 ~v~~~~~d-g~~-~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi  231 (314)
T d1pjxa_         154 SIYCFTTD-GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECTT-SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEEeec-Cce-eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence            33333332 222 22222223346889988764     45566778899999875432221  111   11 11224567


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcC-EEEEeeCCCeEEEEECC
Q psy4653         149 VINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKP-YLISGADDRLVKIWDYQ  217 (229)
Q Consensus       149 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~d~~i~iwd~~  217 (229)
                      ++.. +++++++....+.|.+||...+.....+........+++|  .+++. +.+|.+.++.|.-.++.
T Consensus       232 avD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af--g~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         232 DFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF--KPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE--CTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEE--eCCCCEEEEEECCCCcEEEEECC
Confidence            7776 6788888888899999998877777777665566788888  44544 66788888988888864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.79  E-value=4.3e-06  Score=64.02  Aligned_cols=205  Identities=8%  Similarity=0.045  Sum_probs=123.7

Q ss_pred             ceEEEEEccCCCeEEEEEe-------cCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          17 RVKCCDLHPTEPWMLASLY-------NGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~-------dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .....+|+|+|+..++...       +|.|..||..+++.........    ..-..+.|.++++.|+++.....|..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            4567899999997776432       4789999999887644322111    1246799999999888887777788888


Q ss_pred             CCCcceEEEeccCC----CceeEEEEcCCCCEEEEEeC---------------CCcEEEEecCCceeeeeeeecceeeEE
Q psy4653          86 YNTLERFHSFEAHS----DYVRCVAVHPTQPFLLTSSD---------------DMLIKLWNWEKAWACQQVFEGHTHYVM  146 (229)
Q Consensus        86 ~~~~~~~~~~~~h~----~~i~~v~~~~~~~~~~s~~~---------------d~~v~lwd~~~~~~~~~~~~~~~~~v~  146 (229)
                      .+............    ...+.+++.+++.+.++-..               ++.|..++.+.  ...... ..-....
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg--~~~~~~-~~~~~pN  175 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--QMIQVD-TAFQFPN  175 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--CEEEEE-EEESSEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC--ceeEee-CCcceee
Confidence            77543321111111    12467999999998877532               22344444322  222221 1122235


Q ss_pred             EEEEcCCCC----CEEEEEECCCcEEEEeCCCCCceE------EEec-CCCceEEEEEEeCCCcCEEEEeeCCCeEEEEE
Q psy4653         147 QIVINPKDN----NTFASASLDRTVKVWQLGSASPNF------TLEG-HEKGVNCVDYYHGGDKPYLISGADDRLVKIWD  215 (229)
Q Consensus       147 ~~~~~~~~~----~~l~s~~~d~~i~~wd~~~~~~~~------~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd  215 (229)
                      .++|+|...    .++++.+..++|..+|+.....+.      .+.+ +......+++  ..++++.++....+.|..||
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav--D~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF--DEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE--BTTCCEEEEEETTTEEEEEC
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE--ecCCcEEEEEcCCCEEEEEe
Confidence            677876322    256666788899999875433221      1111 1122445666  34566777777889999999


Q ss_pred             CCCCeEEEeec
Q psy4653         216 YQNKTCVQTLE  226 (229)
Q Consensus       216 ~~~~~~~~~~~  226 (229)
                      .+.++.+.++.
T Consensus       254 p~~g~~~~~i~  264 (314)
T d1pjxa_         254 PDGGQPKMRIR  264 (314)
T ss_dssp             TTCBSCSEEEE
T ss_pred             CCCCEEEEEEE
Confidence            88776555443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.73  E-value=1.8e-05  Score=61.70  Aligned_cols=159  Identities=12%  Similarity=0.117  Sum_probs=95.7

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCeEEEEECCCcceE---EEec--cCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCc
Q psy4653          59 PVRAAKFVPRKNWIVTGSD-DMQVCVFNYNTLERF---HSFE--AHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKA  131 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~---~~~~--~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~  131 (229)
                      .+.++.|+|+|+++++.+. ...|.+|+......+   ....  .....-+.+.|+|+++++. +...+++|.+|++...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999998877754 347888876533221   1211  1234578899999999875 5556789999998654


Q ss_pred             eeeeeee------------------ecceeeEEEEEEcCCCCCEEEEEE-CCC-----cEEEEeCCCCCceEEE---e--
Q psy4653         132 WACQQVF------------------EGHTHYVMQIVINPKDNNTFASAS-LDR-----TVKVWQLGSASPNFTL---E--  182 (229)
Q Consensus       132 ~~~~~~~------------------~~~~~~v~~~~~~~~~~~~l~s~~-~d~-----~i~~wd~~~~~~~~~~---~--  182 (229)
                      .......                  ..+......+.++| ++.+++++. .+.     .|..|++.....+...   .  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            3211110                  01122345678898 677766553 222     3777776554332211   1  


Q ss_pred             -cCCCceEEEEEEeCCCcCEE-EEeeCCCeEEEEECCCC
Q psy4653         183 -GHEKGVNCVDYYHGGDKPYL-ISGADDRLVKIWDYQNK  219 (229)
Q Consensus       183 -~h~~~v~~~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~  219 (229)
                       ........+++.+. ++++| ++...++.|.+|+++..
T Consensus       305 ~~~G~~p~~i~~~p~-~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPW-SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTT-CTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCC-CCCEEEEEeCCCCeEEEEEEeCC
Confidence             11223456777432 34544 55568899999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.72  E-value=1.6e-06  Score=67.98  Aligned_cols=159  Identities=9%  Similarity=0.102  Sum_probs=99.5

Q ss_pred             ceEEEEEccCCCeEEEEE-ecCeEEEEEcCCC-CeEE--EEEe--cCcCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCc
Q psy4653          17 RVKCCDLHPTEPWMLASL-YNGHVHVWNHETN-QNVK--SFEV--CDLPVRAAKFVPRKNWIVT-GSDDMQVCVFNYNTL   89 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~-~~~~--~~~~--~~~~v~~~~~~~~~~~l~s-g~~d~~i~iwd~~~~   89 (229)
                      -+.++.|+|++++++++. ....|.+|+.... +...  ....  ....-+.+.|+|+++++.+ ...++.|.+|+++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            367899999999998876 4568888876543 3221  1111  1345789999999998744 446788999998754


Q ss_pred             ceE--EEec-----------------cCCCceeEEEEcCCCCEEEEEeC-C-----CcEEEEecCCceeeeeeee-----
Q psy4653          90 ERF--HSFE-----------------AHSDYVRCVAVHPTQPFLLTSSD-D-----MLIKLWNWEKAWACQQVFE-----  139 (229)
Q Consensus        90 ~~~--~~~~-----------------~h~~~i~~v~~~~~~~~~~s~~~-d-----~~v~lwd~~~~~~~~~~~~-----  139 (229)
                      +..  ....                 .+......+.++|++++++++.. +     ..|..|++...........     
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            321  1110                 01112457899999999877643 2     2377777654322221111     


Q ss_pred             cceeeEEEEEEcCCCCCEEE-EEECCCcEEEEeCCCC
Q psy4653         140 GHTHYVMQIVINPKDNNTFA-SASLDRTVKVWQLGSA  175 (229)
Q Consensus       140 ~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~  175 (229)
                      ........+.++|.++.+|+ ++..++.|.+|++...
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            11122455778876677655 4457899999987543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=2.7e-05  Score=58.29  Aligned_cols=156  Identities=10%  Similarity=0.185  Sum_probs=107.8

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      .....+++.+++..+++....+.+.+++.. ++.+..+...  ......+.+.++++.+++....+.|.+||.. ++.+.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceee
Confidence            345678888888877777777788888755 4555555332  2456788899999988888888999999975 45565


Q ss_pred             Eec--cCCCceeEEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeeeeec--ceeeEEEEEEcCCCCCEEEEEECCCcEE
Q psy4653          94 SFE--AHSDYVRCVAVHPTQPFLLTSSD-DMLIKLWNWEKAWACQQVFEG--HTHYVMQIVINPKDNNTFASASLDRTVK  168 (229)
Q Consensus        94 ~~~--~h~~~i~~v~~~~~~~~~~s~~~-d~~v~lwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~  168 (229)
                      .+.  +....-..|++.+++.++++-.. ++.|.+|+....  ....+..  .......+++.| ++.+++ ++.+++|+
T Consensus       192 ~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~--~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~  267 (279)
T d1q7fa_         192 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ--LISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLY  267 (279)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC--EEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEE
T ss_pred             eecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCC--EEEEEeCCCCCCCEeEEEEeC-CCcEEE-EeCCCeEE
Confidence            553  33445678999999997776544 456999985432  2233321  123467788887 565555 56799999


Q ss_pred             EEeCCCCCc
Q psy4653         169 VWQLGSASP  177 (229)
Q Consensus       169 ~wd~~~~~~  177 (229)
                      +|......|
T Consensus       268 ~fr~~~~~~  276 (279)
T d1q7fa_         268 IYRYVQLAP  276 (279)
T ss_dssp             EEECSCCCC
T ss_pred             EEEeeeecC
Confidence            999876654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.2e-06  Score=65.90  Aligned_cols=148  Identities=16%  Similarity=0.116  Sum_probs=96.1

Q ss_pred             EEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEec---CcCeEEEEEcCCCCEEEEEe---------CCCeEEEEECCC
Q psy4653          21 CDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVC---DLPVRAAKFVPRKNWIVTGS---------DDMQVCVFNYNT   88 (229)
Q Consensus        21 ~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~---------~d~~i~iwd~~~   88 (229)
                      ..|.+++.++. -..+|.|.+||+.+++....+...   ...+....|+|++++++.+.         ..+.+.++|+++
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            46888887654 455789999999998765444332   23577888999999887764         346788999987


Q ss_pred             cceE--EEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeecceee-----------------EEEEE
Q psy4653          89 LERF--HSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEGHTHY-----------------VMQIV  149 (229)
Q Consensus        89 ~~~~--~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~-----------------v~~~~  149 (229)
                      +...  .........+.-..|||+|+.++-.. ++.|.+.+.........+..+....                 -..+.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            6542  22223344566789999999876544 6678888876553333332222111                 14677


Q ss_pred             EcCCCCCEEEEEE-CCCcEEEEe
Q psy4653         150 INPKDNNTFASAS-LDRTVKVWQ  171 (229)
Q Consensus       150 ~~~~~~~~l~s~~-~d~~i~~wd  171 (229)
                      |+| |+..||... .+..+..+.
T Consensus       180 WSP-Dgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         180 WSP-DGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             ECT-TSSEEEEEEEECTTSCEEE
T ss_pred             ECC-CCCeEEEEEecccccceee
Confidence            898 688888764 344444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.40  E-value=9.1e-05  Score=55.89  Aligned_cols=155  Identities=12%  Similarity=0.038  Sum_probs=103.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q psy4653          59 PVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVF  138 (229)
Q Consensus        59 ~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~  138 (229)
                      .+..+++.|+|+++++...+++|..|+.+..  ...+......+.+++|++++.++++...++.+..++...........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4678999999999999999998888886543  33344455778999999999999998888888888865432211111


Q ss_pred             --ecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEec--------C--CCceEEEEEEeCCCcCEEEEee
Q psy4653         139 --EGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEG--------H--EKGVNCVDYYHGGDKPYLISGA  206 (229)
Q Consensus       139 --~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------h--~~~v~~~~~~~~~~~~~l~s~s  206 (229)
                        .........+.+.+ ++.++++.+.++.+..+|...+........        +  ....+.+.+  .+ ..++.+.+
T Consensus       107 ~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~  182 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FG-NFLYVSNT  182 (302)
T ss_dssp             EECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ET-TEEEEEET
T ss_pred             cccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cC-CceeeecC
Confidence              12234467788887 678888888888888888776532221110        1  112344544  22 33566667


Q ss_pred             CCCeEEEEECCCC
Q psy4653         207 DDRLVKIWDYQNK  219 (229)
Q Consensus       207 ~d~~i~iwd~~~~  219 (229)
                      ..+.|..++....
T Consensus       183 ~~~~i~~~~~~~~  195 (302)
T d2p4oa1         183 EKMLLLRIPVDST  195 (302)
T ss_dssp             TTTEEEEEEBCTT
T ss_pred             CCCeEEecccccc
Confidence            7788887776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.31  E-value=0.00031  Score=53.40  Aligned_cols=178  Identities=11%  Similarity=0.047  Sum_probs=108.2

Q ss_pred             CCceEEEEEccCCCeEEEEEe----cCeEEEEEcCCCCeEEEEEec--CcCeEEEEEcCCCCEEEEEeCC------CeEE
Q psy4653          15 SDRVKCCDLHPTEPWMLASLY----NGHVHVWNHETNQNVKSFEVC--DLPVRAAKFVPRKNWIVTGSDD------MQVC   82 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~----dg~v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d------~~i~   82 (229)
                      ......++++|+|..+++...    .+.+...+..+..........  ......+.+.++|++.++....      +.+.
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~  160 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  160 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence            345678999999987776543    244555666665554433221  2346778999999877664321      2344


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeee-------ecceeeEEEEEEcCCC
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWACQQVF-------EGHTHYVMQIVINPKD  154 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~  154 (229)
                      .++.+. +.+..+...-..-+.++|+|+++.| ++-+..+.|..|++..........       .......-.+++.+ +
T Consensus       161 ~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~  238 (319)
T d2dg1a1         161 YVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-D  238 (319)
T ss_dssp             EECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-T
T ss_pred             EEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-C
Confidence            444433 2333322223345789999999855 566778899999976432211111       01111234677776 6


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCceEEEec------CCCceEEEEEEe
Q psy4653         155 NNTFASASLDRTVKVWQLGSASPNFTLEG------HEKGVNCVDYYH  195 (229)
Q Consensus       155 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------h~~~v~~~~~~~  195 (229)
                      +++.++....+.|.++|. .++.+.++..      +...+.+++|.+
T Consensus       239 G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~  284 (319)
T d2dg1a1         239 DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP  284 (319)
T ss_dssp             CCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             CCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence            888888889999999996 5676666642      233467788743

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.17  E-value=0.00062  Score=51.10  Aligned_cols=186  Identities=9%  Similarity=0.030  Sum_probs=117.3

Q ss_pred             CCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecC----cCeEEEEEcCCCCEEEEEeCC----CeEEEEEC
Q psy4653          15 SDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCD----LPVRAAKFVPRKNWIVTGSDD----MQVCVFNY   86 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg~~d----~~i~iwd~   86 (229)
                      ...+.++++.+++.++++ +. ..+.++|..+++.........    .....+.+.|+|++.++....    +.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            457889999989876665 44 468889999987644332221    237788899999876654322    23456666


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEE-EEEeCCCcEEEEecCCceee----eee---eecceeeEEEEEEcCCCCCEE
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFL-LTSSDDMLIKLWNWEKAWAC----QQV---FEGHTHYVMQIVINPKDNNTF  158 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~-~s~~~d~~v~lwd~~~~~~~----~~~---~~~~~~~v~~~~~~~~~~~~l  158 (229)
                      ..++...... .-..-+.++|++++..+ ++-+..+.|..+++......    ...   +.+-.+....+.+.. ++.+.
T Consensus       136 ~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlW  213 (295)
T d2ghsa1         136 AKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIW  213 (295)
T ss_dssp             ETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEE
T ss_pred             cCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEE
Confidence            5554433332 23345789999999865 56666789999987432110    111   122233456677775 67777


Q ss_pred             EEEECCCcEEEEeCCCCCceEEEecCCCceEEEEEEeCCC-cCEEEEee
Q psy4653         159 ASASLDRTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGD-KPYLISGA  206 (229)
Q Consensus       159 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s  206 (229)
                      ++....+.|..||- .++.+..+.--...+.+++|- .++ ..+++|..
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG-G~d~~~LyvTta  260 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI-GPDASRLLVTSA  260 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE-STTSCEEEEEEB
T ss_pred             eeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe-CCCCCEEEEEEC
Confidence            77677888999995 566677776544568888884 223 33555533

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.04  E-value=0.0011  Score=49.62  Aligned_cols=200  Identities=10%  Similarity=0.108  Sum_probs=125.4

Q ss_pred             EEEEEccC-CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec-
Q psy4653          19 KCCDLHPT-EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE-   96 (229)
Q Consensus        19 ~~~~~~p~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-   96 (229)
                      .+..|++. +.+.++--..+.|..||..+++. ..+. ....+.++.+.++++++++ +.+ .+..+|.++++...... 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            56678875 45555556789999999999765 3333 3456888999888877765 444 48889998876433221 


Q ss_pred             -cC--CCceeEEEEcCCCCEEEEEeCC----CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          97 -AH--SDYVRCVAVHPTQPFLLTSSDD----MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        97 -~h--~~~i~~v~~~~~~~~~~s~~~d----~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                       ..  ...++.+.+.|+|.+.++....    +.-.+|.+..+ ....+... -.....+.+++....++++.+..+.|..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-KVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-EEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC-cEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence             11  2357889999999977765432    23456665544 23333322 2234677888854446677778889999


Q ss_pred             EeCCCCC------ceEEEe--cCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeecc
Q psy4653         170 WQLGSAS------PNFTLE--GHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLES  227 (229)
Q Consensus       170 wd~~~~~------~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  227 (229)
                      +++....      ......  +.......+++  ..++++.++....+.|..||- .++.+..++.
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v--D~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC--DAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE--CTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             eeecccccccccceEEEeccCcccccccceEE--cCCCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence            9875321      111111  22333555665  445566666667888999996 4667776653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.00066  Score=54.39  Aligned_cols=110  Identities=11%  Similarity=0.085  Sum_probs=72.5

Q ss_pred             ceEEEEEccCCCeEEEEE---------ecCeEEEEEcCCCCeEEEEE--ecCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q psy4653          17 RVKCCDLHPTEPWMLASL---------YNGHVHVWNHETNQNVKSFE--VCDLPVRAAKFVPRKNWIVTGSDDMQVCVFN   85 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~---------~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd   85 (229)
                      .+....||||++.++...         ..+...++|+.++.......  .....+....|+|+|+.||=.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            567788999999887764         35788999999887543322  1233456688999999887764 66778877


Q ss_pred             CCCcceEEEecc-CCCc-----------------eeEEEEcCCCCEEEEEe-CCCcEEEEe
Q psy4653          86 YNTLERFHSFEA-HSDY-----------------VRCVAVHPTQPFLLTSS-DDMLIKLWN  127 (229)
Q Consensus        86 ~~~~~~~~~~~~-h~~~-----------------i~~v~~~~~~~~~~s~~-~d~~v~lwd  127 (229)
                      ..+++.++.... ..+.                 -.++.|||++++|+... .+..|..+.
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceee
Confidence            766554433321 1111                 14788999999887654 334454443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=0.0023  Score=46.47  Aligned_cols=179  Identities=9%  Similarity=0.055  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCCCceeEEEEcCCCCEE
Q psy4653          38 HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDM---QVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFL  114 (229)
Q Consensus        38 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~  114 (229)
                      .|.+-|...++....+ .....+.+-.|+|+|+.||-.....   .+.+.+...+.. ..+..+.+......|+|++..+
T Consensus        20 ~l~i~d~dG~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            5777787755554444 4456788999999999988665443   455666666554 3344567788899999999987


Q ss_pred             EEEeC-CCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE--eCCCCCceEEEecCCCceEEE
Q psy4653         115 LTSSD-DMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW--QLGSASPNFTLEGHEKGVNCV  191 (229)
Q Consensus       115 ~s~~~-d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w--d~~~~~~~~~~~~h~~~v~~~  191 (229)
                      +.... ++...++.......................+++.....+++...++...+|  +...... ..+..........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~  176 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA  176 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccc
Confidence            75543 333333332211111111111222233444555444455555566655544  4444322 2233333334444


Q ss_pred             EEEeCCCcCEEEEee-CCCeEEEE--ECCCCeE
Q psy4653         192 DYYHGGDKPYLISGA-DDRLVKIW--DYQNKTC  221 (229)
Q Consensus       192 ~~~~~~~~~~l~s~s-~d~~i~iw--d~~~~~~  221 (229)
                      .+  .+++..++..+ ..+...+|  +...+..
T Consensus       177 ~~--spdg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         177 DV--SSDGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             EE--CTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             cc--ccccceeEEEeecCCceeeeEeecccccc
Confidence            55  34455555443 44444444  4444433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.0027  Score=46.66  Aligned_cols=208  Identities=9%  Similarity=-0.031  Sum_probs=130.6

Q ss_pred             cCCCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCcc
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIV-TGSDDMQVCVFNYNTLE   90 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d~~i~iwd~~~~~   90 (229)
                      .+...+.+++|++..+.++-+. .++.|...++..+.........-.....+++..-++.|. +-...+.|.+.+++...
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            3344577899999888777664 568899888887655444433334678888887666554 44556789999987554


Q ss_pred             eEEEeccCCCceeEEEEcCCCCEEEEEe-CCCc--EEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcE
Q psy4653          91 RFHSFEAHSDYVRCVAVHPTQPFLLTSS-DDML--IKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTV  167 (229)
Q Consensus        91 ~~~~~~~h~~~i~~v~~~~~~~~~~s~~-~d~~--v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  167 (229)
                      ....+.........++++|...++.... ..+.  |..-++... ....+....-.....+++.+.++.++.+-...++|
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-CceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            3222233335678999999777665432 2233  444455433 22222222223456788887666566776677899


Q ss_pred             EEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEee
Q psy4653         168 KVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTL  225 (229)
Q Consensus       168 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  225 (229)
                      ...++........+.+-. ....+++.   ++.+..|-...+.|...|..+++.+.++
T Consensus       192 ~~~~~~g~~~~~v~~~~~-~P~~lav~---~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         192 ECLNPAQPGRRKVLEGLQ-YPFAVTSY---GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEETTEEEEEEEEECCC-SEEEEEEE---TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCeEEEECCCC-CcEEEEEE---CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            999987554333344422 24567764   2335566667788999999988877665

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.51  E-value=0.0079  Score=43.55  Aligned_cols=94  Identities=10%  Similarity=0.067  Sum_probs=62.9

Q ss_pred             EEccC--CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC----CC--eEEEEECCCcceEE
Q psy4653          22 DLHPT--EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD----DM--QVCVFNYNTLERFH   93 (229)
Q Consensus        22 ~~~p~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----d~--~i~iwd~~~~~~~~   93 (229)
                      ..+|+  |+.++-.+ +|.|.+.|+.+++.. .+......+....|+|+|+.||-...    +.  .|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45798  88776654 567888899988764 44455556888999999998875432    22  36666777665533


Q ss_pred             Eec------cCCCceeEEEEcCCCCEEEEE
Q psy4653          94 SFE------AHSDYVRCVAVHPTQPFLLTS  117 (229)
Q Consensus        94 ~~~------~h~~~i~~v~~~~~~~~~~s~  117 (229)
                      ...      ..........|+|+++.++..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEE
Confidence            211      112245678899999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.90  E-value=0.061  Score=41.95  Aligned_cols=188  Identities=13%  Similarity=0.112  Sum_probs=113.1

Q ss_pred             cCCCeEEEEE-ecCeEEEEEcCCCCeEEEEEec-CcCeEEEEEcC--CCCEEEEEeCCC------------------eEE
Q psy4653          25 PTEPWMLASL-YNGHVHVWNHETNQNVKSFEVC-DLPVRAAKFVP--RKNWIVTGSDDM------------------QVC   82 (229)
Q Consensus        25 p~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~sg~~d~------------------~i~   82 (229)
                      +||++|++.. .++.|-+-|+.+.+..+..+.- ......++..+  +-.+++.++.+.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4899999986 6889999999998886654432 23466666654  445787776633                  266


Q ss_pred             EEECCCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCC---------------cEEEEecC------------------
Q psy4653          83 VFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDM---------------LIKLWNWE------------------  129 (229)
Q Consensus        83 iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~---------------~v~lwd~~------------------  129 (229)
                      ++|.++++...+..-. .....++++++|+++++.+.+.               .+.++++.                  
T Consensus       177 ~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            7899988876665432 2456899999999988776432               12333331                  


Q ss_pred             -----Ccee--eeeeeecceeeEEEEEEcCCCCCEEE-EEECCCcEEEEeCCCC--------CceEEEec---CCCceEE
Q psy4653         130 -----KAWA--CQQVFEGHTHYVMQIVINPKDNNTFA-SASLDRTVKVWQLGSA--------SPNFTLEG---HEKGVNC  190 (229)
Q Consensus       130 -----~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~--------~~~~~~~~---h~~~v~~  190 (229)
                           ....  ......- ......+.++| |+.+++ ++..+.++.+.|++.-        .+...+.+   -.-+...
T Consensus       256 VVD~~~~~~~~v~~yIPV-pKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEECSGG--CSSEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             eecccccCCcceeEEEec-CCCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence                 1000  0000000 01123567788 566665 4558999999998531        11111111   1122334


Q ss_pred             EEEEeCCCcCEEEEeeCCCeEEEEECC
Q psy4653         191 VDYYHGGDKPYLISGADDRLVKIWDYQ  217 (229)
Q Consensus       191 ~~~~~~~~~~~l~s~s~d~~i~iwd~~  217 (229)
                      .+|  .+.++-..|-.-|..|--|++.
T Consensus       334 t~f--d~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         334 TAF--DGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEE--CTTSEEEEEETTTTEEEEEEHH
T ss_pred             ccc--CCCceEEEEeeccceEEEEecc
Confidence            465  4555555566789999999974

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.056  Score=39.34  Aligned_cols=208  Identities=11%  Similarity=0.007  Sum_probs=125.4

Q ss_pred             CCceEEEEEccCCCeEEEEE-ecCeEEEEEcCCCCe----EEEEEecCcCeEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q psy4653          15 SDRVKCCDLHPTEPWMLASL-YNGHVHVWNHETNQN----VKSFEVCDLPVRAAKFVPRKNWIVTG-SDDMQVCVFNYNT   88 (229)
Q Consensus        15 ~~~v~~~~~~p~~~~l~~~~-~dg~v~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~~i~iwd~~~   88 (229)
                      ...+.+++|++..+.+.-+. ..+.|..-++.....    .............+++.+.++.|... ...+.|.+.+++.
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34677899999877776654 566777666653221    11222222346678887765555444 4566899999887


Q ss_pred             cceEEEeccCCCceeEEEEcCCCCEEE-EE-eCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCc
Q psy4653          89 LERFHSFEAHSDYVRCVAVHPTQPFLL-TS-SDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRT  166 (229)
Q Consensus        89 ~~~~~~~~~h~~~i~~v~~~~~~~~~~-s~-~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  166 (229)
                      ......+.........++++|...++. +- +..+.|...++... ....+....-.....+++.+..+.++.+-...+.
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            655444444455678999998665544 43 33456777777543 2233332233445778888766667777777889


Q ss_pred             EEEEeCCCCCceEEEecCC--CceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         167 VKVWQLGSASPNFTLEGHE--KGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       167 i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      |...++.............  .....+++.  + ..+..+-..++.|.-.+..+++....+.
T Consensus       188 I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~-~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E-DKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEE--T-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcccccEEEEEE--C-CEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            9999987654433333322  235567764  2 3355665677888888877776544443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.59  E-value=0.12  Score=41.89  Aligned_cols=166  Identities=9%  Similarity=0.063  Sum_probs=92.2

Q ss_pred             CeEEEEEcCCCCeEEEEEecCc---------CeEEEEEcCCC---CEEEEEeCCCeEEEEECCCcceEEEeccCC-----
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDL---------PVRAAKFVPRK---NWIVTGSDDMQVCVFNYNTLERFHSFEAHS-----   99 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~---------~v~~~~~~~~~---~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-----   99 (229)
                      .+|.-.|.++++....++....         ...-+....++   ..++.++.+|.+.++|..+++.+...+.-.     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            5678889999999887764321         11122222233   357788899999999999988764332100     


Q ss_pred             -----------------------------Cc--eeEEEEcCCCCEEEEEeCC----------------------------
Q psy4653         100 -----------------------------DY--VRCVAVHPTQPFLLTSSDD----------------------------  120 (229)
Q Consensus       100 -----------------------------~~--i~~v~~~~~~~~~~s~~~d----------------------------  120 (229)
                                                   +.  -...+++|+..++.....+                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                         00  0145667776666554433                            


Q ss_pred             --------CcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCceEEEecCCCce-EEE
Q psy4653         121 --------MLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPNFTLEGHEKGV-NCV  191 (229)
Q Consensus       121 --------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v-~~~  191 (229)
                              |.+.-+|+.+++..-+...+.  +...-.+.. .+.+++.|+.|+.++.+|..+++.+++.+-..... .-+
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~--~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~  506 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPM  506 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCC--CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCE
Confidence                    234444444432221111110  000001111 35677789999999999999999999886532211 124


Q ss_pred             EEEeCCCcCEEEEee
Q psy4653         192 DYYHGGDKPYLISGA  206 (229)
Q Consensus       192 ~~~~~~~~~~l~s~s  206 (229)
                      .|..++ ++||+..+
T Consensus       507 ty~~dG-kqyv~v~a  520 (560)
T d1kv9a2         507 TFELAG-RQYVAIMA  520 (560)
T ss_dssp             EEEETT-EEEEEEEE
T ss_pred             EEEECC-EEEEEEEe
Confidence            554443 35665433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.58  E-value=0.14  Score=41.61  Aligned_cols=74  Identities=4%  Similarity=-0.097  Sum_probs=49.8

Q ss_pred             EEEEccCCCeEEEEEe----------------cCeEEEEEcCCCCeEEEEEecCc---------CeEEEEEcCCCC---E
Q psy4653          20 CCDLHPTEPWMLASLY----------------NGHVHVWNHETNQNVKSFEVCDL---------PVRAAKFVPRKN---W   71 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~----------------dg~v~~wd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~   71 (229)
                      ..++.|+...+..+..                ...+.-.|.++|+.+..++....         +........+++   .
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~  318 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             ccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccc
Confidence            3466677776666554                35788899999999988874321         122222333443   5


Q ss_pred             EEEEeCCCeEEEEECCCcceEE
Q psy4653          72 IVTGSDDMQVCVFNYNTLERFH   93 (229)
Q Consensus        72 l~sg~~d~~i~iwd~~~~~~~~   93 (229)
                      ++.++.+|.+.++|.++++.+.
T Consensus       319 v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         319 LSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEE
T ss_pred             eeeccccceEEEEecCCCcEee
Confidence            6788899999999999888764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.41  E-value=0.11  Score=38.52  Aligned_cols=116  Identities=19%  Similarity=0.287  Sum_probs=74.9

Q ss_pred             EEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEeccC
Q psy4653          20 CCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNT-LERFHSFEAH   98 (229)
Q Consensus        20 ~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h   98 (229)
                      ++--||..+.++.=+ ..+++++|+++.+.++.+...+ +|.-=.|..+ +.|+-. .+..|.-|+++. ..+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lV-T~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-CEEEEE-cCCceEEEcccCCCCchhhhhhc
Confidence            455689888777655 6699999999988888876544 5655666644 444444 255689999853 3567777766


Q ss_pred             CC----ceeEEEEcCCCCEEE-EE--eC----CCcEEEEecCCceeeeeeeecc
Q psy4653          99 SD----YVRCVAVHPTQPFLL-TS--SD----DMLIKLWNWEKAWACQQVFEGH  141 (229)
Q Consensus        99 ~~----~i~~v~~~~~~~~~~-s~--~~----d~~v~lwd~~~~~~~~~~~~~~  141 (229)
                      ..    .|-.-..+++.+.++ +|  ..    .|.+.||..++.  ..+.++||
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~--~sQ~ieGh  194 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGH  194 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCS
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC--cCccccce
Confidence            43    455666677777543 22  22    257789988653  23444444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.37  E-value=0.18  Score=40.81  Aligned_cols=58  Identities=9%  Similarity=0.069  Sum_probs=39.1

Q ss_pred             CcEEEEeCCCCCceEEEecCCCceE-EEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         165 RTVKVWQLGSASPNFTLEGHEKGVN-CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +.|..+|+.+++.+++...-..... .+.  ..  +.++++|+.||.++-+|.++|+.+=..+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~--Ta--gglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLY--TK--GGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEE--ET--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeE--ec--CCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            4677888888887776643211111 111  12  3478889999999999999999885554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.20  E-value=0.026  Score=46.13  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=56.4

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCce-eEEEEcCCCC-EE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYV-RCVAVHPTQP-FL  114 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i-~~v~~~~~~~-~~  114 (229)
                      |.+.-+|+.+++.+..+.... ++.+-..+..+.++++|+.||.++.+|.++++.+.+++-..... .-+.|..+++ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            678889999999988877543 33322334567888899999999999999999998876433221 2367777776 44


Q ss_pred             E
Q psy4653         115 L  115 (229)
Q Consensus       115 ~  115 (229)
                      +
T Consensus       545 ~  545 (582)
T d1flga_         545 G  545 (582)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.13  E-value=0.25  Score=39.97  Aligned_cols=30  Identities=7%  Similarity=0.117  Sum_probs=26.2

Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCceEEEec
Q psy4653         154 DNNTFASASLDRTVKVWQLGSASPNFTLEG  183 (229)
Q Consensus       154 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  183 (229)
                      .+.+++.|+.|+.++.+|..+++.+++++-
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            356788899999999999999999998864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.06  E-value=0.058  Score=38.62  Aligned_cols=93  Identities=11%  Similarity=0.082  Sum_probs=56.3

Q ss_pred             EcCC--CCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEEE-eCCC-----cEEEEecCCceeeee
Q psy4653          65 FVPR--KNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLTS-SDDM-----LIKLWNWEKAWACQQ  136 (229)
Q Consensus        65 ~~~~--~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~-~~d~-----~v~lwd~~~~~~~~~  136 (229)
                      .+|+  |+.++-. .++.|.+.|+.+++. +.+..+.+.+....|||||+.|+-. ..++     .|.+.+...+.....
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4677  8877654 356788889987765 4555566778899999999987633 2222     366667655533221


Q ss_pred             eee-----cceeeEEEEEEcCCCCCEEEE
Q psy4653         137 VFE-----GHTHYVMQIVINPKDNNTFAS  160 (229)
Q Consensus       137 ~~~-----~~~~~v~~~~~~~~~~~~l~s  160 (229)
                      ...     ..........|+| ++..++.
T Consensus        84 t~~~~~~~~~~~~~~~~~~sp-dg~~l~~  111 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDP-DGNLIIS  111 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECT-TCCEEEE
T ss_pred             eecCCCccCccccccccccCC-CCCEEEE
Confidence            111     1122334566777 5565554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.16  Score=36.82  Aligned_cols=175  Identities=9%  Similarity=-0.012  Sum_probs=106.3

Q ss_pred             CceEEEEEccCCCeEEEE-EecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCcceE
Q psy4653          16 DRVKCCDLHPTEPWMLAS-LYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSD--DMQVCVFNYNTLERF   92 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--d~~i~iwd~~~~~~~   92 (229)
                      ..+..+++.+.+..|..+ ...+.|.+.++........+.........+...|...+|.-...  .+.|.-.+.......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            346678888776666655 45679999999876655555444456788999987665544432  345555566543332


Q ss_pred             EEeccCCCceeEEEEcCCCCEEE-EEeCCCcEEEEecCCceeeeeeeecc--eeeEEEEEEcCCCCCEEEEEECCCcEEE
Q psy4653          93 HSFEAHSDYVRCVAVHPTQPFLL-TSSDDMLIKLWNWEKAWACQQVFEGH--THYVMQIVINPKDNNTFASASLDRTVKV  169 (229)
Q Consensus        93 ~~~~~h~~~i~~v~~~~~~~~~~-s~~~d~~v~lwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~~  169 (229)
                      ......-...+.+++.+.+..|. +-...+.|...++.... ...+....  ......+++.  ++.++.+-..++.|..
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFS  233 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-EEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEE
Confidence            22233335568899998777554 55667889888886432 22222222  1234556654  3456666667788888


Q ss_pred             EeCCCCCceEEEecCCCceEEEEE
Q psy4653         170 WQLGSASPNFTLEGHEKGVNCVDY  193 (229)
Q Consensus       170 wd~~~~~~~~~~~~h~~~v~~~~~  193 (229)
                      .+..++.....+......+..+..
T Consensus       234 ~~~~~g~~~~~~~~~~~~p~~i~v  257 (266)
T d1ijqa1         234 ANRLTGSDVNLLAENLLSPEDMVL  257 (266)
T ss_dssp             EETTTCCCCEEEECSCSCCCCEEE
T ss_pred             EECCCCcceEEEEcCCCCceEEEE
Confidence            887777666656544333444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.97  E-value=0.21  Score=37.80  Aligned_cols=202  Identities=11%  Similarity=0.170  Sum_probs=111.8

Q ss_pred             EEEEEccC---CCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEE------cCCCCEEEEEeCC----CeEEEEE
Q psy4653          19 KCCDLHPT---EPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKF------VPRKNWIVTGSDD----MQVCVFN   85 (229)
Q Consensus        19 ~~~~~~p~---~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~d----~~i~iwd   85 (229)
                      .++.+||.   ..+++.+...+-|.+||+. |+.+..+...  .+..+..      .....-|++++..    ..|.+|.
T Consensus        29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~G--r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          29 PAIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYHTG--KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             EEEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECCSS--CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             ceEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecccC--CcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            45556664   4566666677779999996 7777766433  2333322      2222335555532    2677887


Q ss_pred             CCC-cceEEEeccC-------CCceeEEEE--cCC-CC-EEEEEeCCCcEEEEecCCc--e----eeeeeeecceeeEEE
Q psy4653          86 YNT-LERFHSFEAH-------SDYVRCVAV--HPT-QP-FLLTSSDDMLIKLWNWEKA--W----ACQQVFEGHTHYVMQ  147 (229)
Q Consensus        86 ~~~-~~~~~~~~~h-------~~~i~~v~~--~~~-~~-~~~s~~~d~~v~lwd~~~~--~----~~~~~~~~~~~~v~~  147 (229)
                      +.. ...+..+...       ...+..+++  ++. +. +++....+|.+..|.+...  .    ...+.+.. ...+-.
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EG  184 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEG  184 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccce
Confidence            642 2333333221       123556665  664 44 5667778899998876321  1    11223322 234566


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEeCCCC--CceEE---Eec--CCCceEEEEEEeCCCcC-EEEE-eeCCCeEEEEECCC
Q psy4653         148 IVINPKDNNTFASASLDRTVKVWQLGSA--SPNFT---LEG--HEKGVNCVDYYHGGDKP-YLIS-GADDRLVKIWDYQN  218 (229)
Q Consensus       148 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~---~~~--h~~~v~~~~~~~~~~~~-~l~s-~s~d~~i~iwd~~~  218 (229)
                      +++.+. ...|..+-.+..|..+++...  .....   ..+  ....+.-++.+...++. +|+. .-.|.+..+||.++
T Consensus       185 CVvDde-~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         185 MAADDE-YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEETT-TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEeCC-CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            667764 456666677766655555321  11111   112  24568888887654432 5544 44689999999876


Q ss_pred             -CeEEEee
Q psy4653         219 -KTCVQTL  225 (229)
Q Consensus       219 -~~~~~~~  225 (229)
                       .+-+..+
T Consensus       264 ~~~~~g~F  271 (353)
T d1h6la_         264 QNKYVADF  271 (353)
T ss_dssp             TCCEEEEE
T ss_pred             CccccceE
Confidence             3555443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.58  E-value=0.042  Score=44.75  Aligned_cols=76  Identities=14%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCce-eEEEEcCCCCE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYV-RCVAVHPTQPF  113 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i-~~v~~~~~~~~  113 (229)
                      |.+.-||+.+++.+..++... +...-.....+.++++|+.||.++.+|.++++.+.+++-..... .-+.|..++++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            467889999999988876543 22222233467888899999999999999999998876433211 12555556663

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.51  E-value=0.46  Score=38.26  Aligned_cols=59  Identities=7%  Similarity=0.104  Sum_probs=39.9

Q ss_pred             CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +.+.-+|+.+++.+++.+.... ...-.....  +.++++|+.||.++-+|.++|+.+=..+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~Ta--gglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLSTA--GNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEET--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC-CCCceeEEC--CCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            4677888888888777653211 111011112  3478899999999999999999885554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.43  E-value=0.14  Score=38.67  Aligned_cols=114  Identities=9%  Similarity=0.040  Sum_probs=73.2

Q ss_pred             ceEEEEEccCCCeEEEEEecC-----------eEEEEEcCCCCeEEEE--E-ecCcCeEEEEEcCCCCEEEEEeCC-CeE
Q psy4653          17 RVKCCDLHPTEPWMLASLYNG-----------HVHVWNHETNQNVKSF--E-VCDLPVRAAKFVPRKNWIVTGSDD-MQV   81 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg-----------~v~~wd~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~sg~~d-~~i   81 (229)
                      ++.......+++.++.|+.+.           .+.+||..+++-...-  . .+........+.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            444555566888888887531           3778999987653321  1 122234566788999999998766 479


Q ss_pred             EEEECCCcceEEEeccCC-CceeEEEEcCCCCEEEEEeCC------CcEEEEecCC
Q psy4653          82 CVFNYNTLERFHSFEAHS-DYVRCVAVHPTQPFLLTSSDD------MLIKLWNWEK  130 (229)
Q Consensus        82 ~iwd~~~~~~~~~~~~h~-~~i~~v~~~~~~~~~~s~~~d------~~v~lwd~~~  130 (229)
                      .+||..+......-.... ..-.+.+..+++++++.++.+      ..+.+||...
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            999988765432111111 122466777889988888653      3588898754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.00  E-value=0.068  Score=43.74  Aligned_cols=79  Identities=11%  Similarity=0.070  Sum_probs=54.7

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCce-eEEEEcCCCC-EE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYV-RCVAVHPTQP-FL  114 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i-~~v~~~~~~~-~~  114 (229)
                      |.+.-||+.+++.+....... +..+-..+..+.+++.|+.||.++.+|.++++.+.+++-..... .-+.|..+++ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            578889999999887765432 22222334467888899999999999999999998876433211 2355555666 44


Q ss_pred             EE
Q psy4653         115 LT  116 (229)
Q Consensus       115 ~s  116 (229)
                      +.
T Consensus       532 av  533 (596)
T d1w6sa_         532 AI  533 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.68  E-value=0.83  Score=36.84  Aligned_cols=59  Identities=10%  Similarity=0.097  Sum_probs=42.8

Q ss_pred             CCcEEEEeCCCCCceEEEecCCCceE-EEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         164 DRTVKVWQLGSASPNFTLEGHEKGVN-CVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       164 d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      .+.+.-+|+.+++.+++.+.+..... .++  .  .+.++++|+.||.++-+|.++|+.+=..+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~ls--t--agglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLA--T--AGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEE--E--TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeE--E--cCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            36788899999998888765432111 122  1  23478889999999999999999986554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.51  Score=33.90  Aligned_cols=183  Identities=9%  Similarity=-0.018  Sum_probs=106.1

Q ss_pred             cCeEEEEEcCCCCeE-----EEEEecCcCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCcceEEEeccCCCceeEEEEcC
Q psy4653          36 NGHVHVWNHETNQNV-----KSFEVCDLPVRAAKFVPRKNWIVTG-SDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHP  109 (229)
Q Consensus        36 dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~  109 (229)
                      .+.|+-.+++..+..     ..+......+..++|.+..+.|.-. ..++.|...+++.......+........++++..
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~   88 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH   88 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEec
Confidence            357777777554321     1222233357789999887766655 4556788888876544333333335678899986


Q ss_pred             CCCE-EEEEeCCCcEEEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEE--eCCCCCceEEEecCCC
Q psy4653         110 TQPF-LLTSSDDMLIKLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVW--QLGSASPNFTLEGHEK  186 (229)
Q Consensus       110 ~~~~-~~s~~~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w--d~~~~~~~~~~~~h~~  186 (229)
                      -+.. .++-...+.|.+.++.... ...+.......+..++++|..+.++.+-......+++  ++............-.
T Consensus        89 ~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~  167 (263)
T d1npea_          89 LGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             cCCeEEEeccCCCEEEEEecCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence            5554 4566677899999987542 2333333334567888988776666664433333444  5544333222222223


Q ss_pred             ceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCe
Q psy4653         187 GVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKT  220 (229)
Q Consensus       187 ~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  220 (229)
                      ....+++.+. ++.+..+-...+.|...|+....
T Consensus       168 ~P~glaiD~~-~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         168 LPNGLTFDAF-SSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             CEEEEEEETT-TTEEEEEETTTTEEEEEETTEEE
T ss_pred             ccceEEEeec-CcEEEEEeCCCCEEEEEECCCCC
Confidence            4566776433 23344555567788888886544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.58  E-value=0.58  Score=34.51  Aligned_cols=141  Identities=12%  Similarity=0.179  Sum_probs=90.6

Q ss_pred             CeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEEcCCCCEEEE
Q psy4653          37 GHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAVHPTQPFLLT  116 (229)
Q Consensus        37 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s  116 (229)
                      .+|.+-|+..+.......-   ..-+.-.+|..+.||.-+ ...+.+||+++.++++.+.-.+ .|.-=.|-.+..+.++
T Consensus        45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lV  119 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV  119 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEE
T ss_pred             ceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEE
Confidence            4788999987654333222   234455789898888876 5589999999998888776444 4555556554444333


Q ss_pred             EeCCCcEEEEecCCceeeeeeeecce----eeEEEEEEcCCCCCEEEE-E--EC----CCcEEEEeCCCCCceEEEecCC
Q psy4653         117 SSDDMLIKLWNWEKAWACQQVFEGHT----HYVMQIVINPKDNNTFAS-A--SL----DRTVKVWQLGSASPNFTLEGHE  185 (229)
Q Consensus       117 ~~~d~~v~lwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s-~--~~----d~~i~~wd~~~~~~~~~~~~h~  185 (229)
                      .  +..|+-|+++....+.++|+.|.    ..|.....++ +.+.++- |  ..    .|.+.+|..... ....+++|.
T Consensus       120 T--~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGha  195 (327)
T d1utca2         120 T--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA  195 (327)
T ss_dssp             C--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred             c--CCceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccccee
Confidence            3  56899999976556777887764    4566666665 4554432 2  12    256778877543 345567774


Q ss_pred             C
Q psy4653         186 K  186 (229)
Q Consensus       186 ~  186 (229)
                      .
T Consensus       196 a  196 (327)
T d1utca2         196 A  196 (327)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.34  E-value=0.5  Score=35.35  Aligned_cols=112  Identities=12%  Similarity=0.033  Sum_probs=64.3

Q ss_pred             EEEEcCCCCEEEEEeCCC-----------eEEEEECCCcceEE--Ee-ccCCCceeEEEEcCCCCEEEEEeCC-CcEEEE
Q psy4653          62 AAKFVPRKNWIVTGSDDM-----------QVCVFNYNTLERFH--SF-EAHSDYVRCVAVHPTQPFLLTSSDD-MLIKLW  126 (229)
Q Consensus        62 ~~~~~~~~~~l~sg~~d~-----------~i~iwd~~~~~~~~--~~-~~h~~~i~~v~~~~~~~~~~s~~~d-~~v~lw  126 (229)
                      ......+++.++-|+.+.           .+.+||+.+++...  .. ..+.....+.++.+++.+++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            333445677766666421           36789998765322  11 2233344567888999999888765 689999


Q ss_pred             ecCCceeee-eeeecceeeEEEEEEcCCCCCEEEEEECC------CcEEEEeCCCC
Q psy4653         127 NWEKAWACQ-QVFEGHTHYVMQIVINPKDNNTFASASLD------RTVKVWQLGSA  175 (229)
Q Consensus       127 d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~  175 (229)
                      |.....-.. ......... ...+..+ ++.+++.|+.+      ..+.+||..+.
T Consensus       104 d~~~~~w~~~~~~~~~r~~-~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGY-QSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSS-CEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCccCcccccccccccccc-cceeeec-CCceeeeccccccccccceeeeecCCCC
Confidence            986542111 111111111 2233333 67888887743      35788887654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.72  E-value=2  Score=34.67  Aligned_cols=59  Identities=10%  Similarity=0.033  Sum_probs=39.2

Q ss_pred             CcEEEEeCCCCCceEEEecCCCceEEEEEEeCCCcCEEEEeeCCCeEEEEECCCCeEEEeec
Q psy4653         165 RTVKVWQLGSASPNFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQTLE  226 (229)
Q Consensus       165 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  226 (229)
                      +.+.-||+.+++.++...... ....-.....  +.+++.|+.||.++-+|.++|+.+=..+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTa--gglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMATA--GDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEET--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEec--CCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            467888888888777654321 1111011112  3478889999999999999999885554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.85  E-value=1.8  Score=32.21  Aligned_cols=154  Identities=12%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             EEEEEccCCCeEEEEEe------------cCeEEEEEcCCCCe-EEEEEecC-------cCeEEEEE--cCCCC-EEEEE
Q psy4653          19 KCCDLHPTEPWMLASLY------------NGHVHVWNHETNQN-VKSFEVCD-------LPVRAAKF--VPRKN-WIVTG   75 (229)
Q Consensus        19 ~~~~~~p~~~~l~~~~~------------dg~v~~wd~~~~~~-~~~~~~~~-------~~v~~~~~--~~~~~-~l~sg   75 (229)
                      ..+...|++..+++++.            .|.+.++|+.+.+. ...+....       -.-..+..  .+++. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            34677888877776641            38999999887543 22222111       11233333  34554 34444


Q ss_pred             e---CCCeEEEEECCCcc-e---EEEeccC-CCceeEEEEcCCCCEEEEEe--C---------------CCcEEEEecCC
Q psy4653          76 S---DDMQVCVFNYNTLE-R---FHSFEAH-SDYVRCVAVHPTQPFLLTSS--D---------------DMLIKLWNWEK  130 (229)
Q Consensus        76 ~---~d~~i~iwd~~~~~-~---~~~~~~h-~~~i~~v~~~~~~~~~~s~~--~---------------d~~v~lwd~~~  130 (229)
                      .   ...+|.+|++.... .   +.++... ....+.+++..++.+++|-.  .               -+.+.-||...
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            3   34578888764322 1   2223221 23467888888888888731  1               12233333321


Q ss_pred             ceeeeeeeecceeeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCC
Q psy4653         131 AWACQQVFEGHTHYVMQIVINPKDNNTFASASLDRTVKVWQLGSAS  176 (229)
Q Consensus       131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  176 (229)
                         ...+.. .-.....++++|....++++-...++|+.|++....
T Consensus       198 ---~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         198 ---VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             ---EEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             ---eEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence               222222 223467889998544566677788999999987544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.21  E-value=2.5  Score=32.65  Aligned_cols=132  Identities=11%  Similarity=0.108  Sum_probs=80.1

Q ss_pred             EEEEEecCeEEEEEcCCCCeEEEEEec-----------------------------------------CcCeEEEEEcC-
Q psy4653          30 MLASLYNGHVHVWNHETNQNVKSFEVC-----------------------------------------DLPVRAAKFVP-   67 (229)
Q Consensus        30 l~~~~~dg~v~~wd~~~~~~~~~~~~~-----------------------------------------~~~v~~~~~~~-   67 (229)
                      +.+|+..|.|+++-+-+++.++.+...                                         +..-..+++.- 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            566789999999999998887765311                                         11233555543 


Q ss_pred             --CCCEEEEEe-CCCeEEEEECCCcceEEEecc-CCCceeEEEEcC--CCCEEEEEeCCC------------------cE
Q psy4653          68 --RKNWIVTGS-DDMQVCVFNYNTLERFHSFEA-HSDYVRCVAVHP--TQPFLLTSSDDM------------------LI  123 (229)
Q Consensus        68 --~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~~~--~~~~~~s~~~d~------------------~v  123 (229)
                        +|++|.+.. .+..|-+.|+++.+..+.... ....+..+...+  ...+++.++.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              578766654 677899999999887554432 234556666654  445777766633                  24


Q ss_pred             EEEecCCceeeeeeeecceeeEEEEEEcCCCCCEEEEEECC
Q psy4653         124 KLWNWEKAWACQQVFEGHTHYVMQIVINPKDNNTFASASLD  164 (229)
Q Consensus       124 ~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  164 (229)
                      ...|.++.....++..+  +....+.+++ ++.++++.+.+
T Consensus       176 t~ID~~tm~V~~QV~V~--g~ld~~~~s~-dGK~af~TsyN  213 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVS--GNLDNCDADY-EGKWAFSTSYN  213 (459)
T ss_dssp             EEEETTTTEEEEEEEES--SCCCCEEECS-SSSEEEEEESC
T ss_pred             EEEecCCceEEEEeeeC--CChhccccCC-CCCEEEEEecc
Confidence            55666655433333322  1233456666 57777766543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.28  E-value=3.6  Score=31.37  Aligned_cols=103  Identities=5%  Similarity=0.070  Sum_probs=65.7

Q ss_pred             cCCCceEEEEEccCCCeEEEEE-ecC----eEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCC---------
Q psy4653          13 ARSDRVKCCDLHPTEPWMLASL-YNG----HVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDD---------   78 (229)
Q Consensus        13 ~~~~~v~~~~~~p~~~~l~~~~-~dg----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---------   78 (229)
                      ++.-.+...+++|+++.++.+- .+|    .+++.|+.+++.+... ........+.|.++++.|.-...+         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cccccccceEEcCCCCEEEEEEeccccCccccc
Confidence            4444456778999999988764 334    6999999999876422 111223568899999877644322         


Q ss_pred             -------CeEEEEECCCcc--eEEEeccC--CCceeEEEEcCCCCEEEE
Q psy4653          79 -------MQVCVFNYNTLE--RFHSFEAH--SDYVRCVAVHPTQPFLLT  116 (229)
Q Consensus        79 -------~~i~iwd~~~~~--~~~~~~~h--~~~i~~v~~~~~~~~~~s  116 (229)
                             ..+..+.+.+..  ....+...  ...+..+..++++++++.
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence                   257777776542  22333333  234667788999998653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.34  E-value=3.1  Score=32.19  Aligned_cols=57  Identities=18%  Similarity=0.167  Sum_probs=38.9

Q ss_pred             cccCCCceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEe--------cCcCeEEEEEcCC
Q psy4653          11 LTARSDRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEV--------CDLPVRAAKFVPR   68 (229)
Q Consensus        11 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~   68 (229)
                      ..+.. .=.+++|.|+++.|++--..|.|++++..+++.......        .+.....++|+|+
T Consensus        23 a~~L~-~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          23 LSNLN-KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             ECCCS-SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             ECCCC-CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34443 556999999998666554579999999888765433221        1234678999885

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.08  E-value=4.5  Score=28.15  Aligned_cols=147  Identities=12%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEeccCCCceeEEEE-cCCCCEEE-E-----EeCCCcEEEEecCCceeeeeeeec
Q psy4653          68 RKNWIVTGSDDMQVCVFNYNTLERFHSFEAHSDYVRCVAV-HPTQPFLL-T-----SSDDMLIKLWNWEKAWACQQVFEG  140 (229)
Q Consensus        68 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~-~~~~~~~~-s-----~~~d~~v~lwd~~~~~~~~~~~~~  140 (229)
                      ..++|+.+...|.+.++-+..++.++-.+   ++|..... ++.-.++. .     |..-+.|...++..... +...+.
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE-E~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE-EQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC-EEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCe-eeEecC
Confidence            45588888899999988776665443222   22222211 11111111 1     12234566666653221 111222


Q ss_pred             ce-eeEEEEEEcCCCCCEEEEEECCCcEEEEeCCCCCce--EEEec-------CCCceEEEEEEeCCCcCEEEEeeC-CC
Q psy4653         141 HT-HYVMQIVINPKDNNTFASASLDRTVKVWQLGSASPN--FTLEG-------HEKGVNCVDYYHGGDKPYLISGAD-DR  209 (229)
Q Consensus       141 ~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~-------h~~~v~~~~~~~~~~~~~l~s~s~-d~  209 (229)
                      -. -.|.+++..  +....++|+......+|-+..++..  ..+++       ...-+..+.+... +..-++++.- .|
T Consensus       101 pk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g-~~~sfF~adl~SG  177 (313)
T d2hu7a1         101 VKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGG-GRVSLFTSNLSSG  177 (313)
T ss_dssp             SCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEET-TEEEEEEEETTTE
T ss_pred             CceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecC-CcceEEEEecccC
Confidence            12 345666664  5678888998888999988766432  22221       1223445555433 3333455554 88


Q ss_pred             eEEEEECCCCeE
Q psy4653         210 LVKIWDYQNKTC  221 (229)
Q Consensus       210 ~i~iwd~~~~~~  221 (229)
                      .++|++...|..
T Consensus       178 ~lri~tpkeGS~  189 (313)
T d2hu7a1         178 GLRVFDSGEGSF  189 (313)
T ss_dssp             EEEEECCSSEEE
T ss_pred             CEEEecCCCCcc
Confidence            899988776643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.37  E-value=6.7  Score=29.53  Aligned_cols=138  Identities=9%  Similarity=0.017  Sum_probs=79.4

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCC---------CCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHET---------NQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNY   86 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~   86 (229)
                      .+.+.++.++....+++|+.+ .+++-.+..         .......+..-..+..++|+.+  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            367889999988888877766 466666321         1111111111235888889743  45554 4556777777


Q ss_pred             CCcceEEEeccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeeeec-----ceeeEEEEEEcCCCCCEEEEE
Q psy4653          87 NTLERFHSFEAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWEKAWACQQVFEG-----HTHYVMQIVINPKDNNTFASA  161 (229)
Q Consensus        87 ~~~~~~~~~~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~  161 (229)
                      ..-........-...+..+.+.|.  .++....++.+.++++.+... .....+     -.+.+.++.|++ .+..++++
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~  188 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAW  188 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EEEEESEEEEEECSSEEEEEETT-SCEEEEEE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcc-ccccCCcceEEecCCceEEEEeC-CcEEEEEe
Confidence            654333333333456778887774  566667788999999876532 121111     123355666665 35555554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.50  E-value=8.1  Score=29.07  Aligned_cols=98  Identities=11%  Similarity=0.018  Sum_probs=64.6

Q ss_pred             ceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q psy4653          17 RVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSFE   96 (229)
Q Consensus        17 ~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~   96 (229)
                      +|..++|+-+  .|++ ..++.+..++..+-...........++..+.++|.  .++....++.+.++++..++......
T Consensus        88 ~v~~vafs~d--~l~v-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLV-STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEE-EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEE-EeCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            6888999754  3444 45677888888775544444444567888888774  45666778999999987764321111


Q ss_pred             -----cCCCceeEEEEcCCCCEEEEEeC
Q psy4653          97 -----AHSDYVRCVAVHPTQPFLLTSSD  119 (229)
Q Consensus        97 -----~h~~~i~~v~~~~~~~~~~s~~~  119 (229)
                           .-.+.+.|++|++.+..++++..
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCC
Confidence                 01245788889888888877643

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=82.28  E-value=6.4  Score=27.70  Aligned_cols=105  Identities=15%  Similarity=0.025  Sum_probs=48.4

Q ss_pred             CceEEEEEccCCCeEEEEEecCeEEEEEcCCCCeEEEEEecCcCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q psy4653          16 DRVKCCDLHPTEPWMLASLYNGHVHVWNHETNQNVKSFEVCDLPVRAAKFVPRKNWIVTGSDDMQVCVFNYNTLERFHSF   95 (229)
Q Consensus        16 ~~v~~~~~~p~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~   95 (229)
                      ..|..++--  ..+.++- .||.|..|-.+...++..-......+..+.-- +...++  -.|+.+..|.......+...
T Consensus        26 ~~i~~va~G--~~h~~al-~dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~a--l~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLAL-KGGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLA--LKDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSEEEEEEC--SSEEEEE-ETTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEE--EETTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEEcc--CCEEEEE-ECCEEEEEeCCCCCceeeeecccccceEEecC-CCceee--eeeeeeeccCCCcceeeccc
Confidence            346666553  2233333 48999999877643322211122334444332 122222  34889999975432111111


Q ss_pred             ccCCCceeEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy4653          96 EAHSDYVRCVAVHPTQPFLLTSSDDMLIKLWNWE  129 (229)
Q Consensus        96 ~~h~~~i~~v~~~~~~~~~~s~~~d~~v~lwd~~  129 (229)
                      ..-...+..++.....  .+ .-.|+.+..|.-.
T Consensus       100 ~~~~~~~~~i~~~~~~--~~-~~~dg~v~~~g~~  130 (273)
T d1jtdb_         100 AEARSGVDAIAAGAWA--SY-ALKDGKVIAWGDD  130 (273)
T ss_dssp             GGGGSSCCEEEEETTE--EE-EEETTEEEEEECC
T ss_pred             cccccceeEEeeeccc--cc-ccccccceecccC
Confidence            1111223344433322  22 2247888888743