Psyllid ID: psy4658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MVDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVDLLAAkesfkgdpnaiLTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR
Flexible Loop (DISEMBL)
mvdllaakesfkgdpnailTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSlerekklr
Low Complexity Region (SEG)
MVDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLareekarkevealnaklleekttllknlegekSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR
Disordered region (IsUnstruct)
**************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MVDLLAAKESFKGDPNA**************************************************************************************************************************************************************E******
Disordered Region (DISEMBL)
MVDLLAAKESFKGDPNAILTRKQILELRQQKLE*****************KEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLET***********DHQIRNLNDEIAHQDELINKLNK************AEELQAAEDKVNHLNKVKAKLEQTLDEL***********
Disordered Region (DISPRO)
MVDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDLLAAKESFKGDPNAILTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEGEKSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxATKDHQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
P05661	1962	Myosin heavy chain, muscl	yes	N/A	0.835	0.077	0.6	3e-48
P02566	1966	Myosin-4 OS=Caenorhabditi	no	N/A	0.840	0.077	0.469	2e-27
P24733	1938	Myosin heavy chain, stria	N/A	N/A	0.769	0.072	0.442	1e-25
Q60LV4	1969	Myosin-3 OS=Caenorhabditi	N/A	N/A	0.829	0.076	0.391	3e-23
P12844	1969	Myosin-3 OS=Caenorhabditi	no	N/A	0.829	0.076	0.388	4e-22
Q8MJV1	1937	Myosin-2 OS=Equus caballu	yes	N/A	0.829	0.077	0.365	6e-15
Q9TV63	1939	Myosin-2 OS=Sus scrofa GN	yes	N/A	0.829	0.077	0.365	7e-15
Q9BE41	1940	Myosin-2 OS=Bos taurus GN	no	N/A	0.829	0.077	0.365	7e-15
Q076A7	1940	Myosin-2 OS=Canis familia	yes	N/A	0.829	0.077	0.365	9e-15
Q90339	1935	Myosin heavy chain, fast	N/A	N/A	0.489	0.045	0.544	1e-14

>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1 SV=4

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 124/195 (63%), Gaps = 43/195 (22%)

Query: 31   KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
            +LEEK  + E   A E K RKE+EALNAKLL EKT LL +L GEK  L   QER AKL A
Sbjct: 850  RLEEKAKKAEELHAAEVKVRKELEALNAKLLAEKTALLDSLSGEKGALQDYQERNAKLTA 909

Query: 91   QKADLETQL-------------------------------------------AADQDKAT 107
            QK DLE QL                                            A+QDKAT
Sbjct: 910  QKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKAT 969

Query: 108  KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
            KDHQIRNLNDEIAHQDELINKLNKEKK  GE  QKT EELQAAEDK+NHLNKVKAKLEQT
Sbjct: 970  KDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQT 1029

Query: 168  LDELEDSLEREKKLR 182
            LDELEDSLEREKK+R
Sbjct: 1030 LDELEDSLEREKKVR 1044

Muscle contraction.
Drosophila melanogaster (taxid: 7227)

>sp|P02566|MYO4_CAEEL Myosin-4 OS=Caenorhabditis elegans GN=unc-54 PE=4 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 115/196 (58%), Gaps = 43/196 (21%)

Query: 30   QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89
            +K+ +KV   E SLA+EEK RKE+E  +AKL+EEKT+L  NLE  K+ LS  +ER AKL 
Sbjct: 862  EKINDKVKALEDSLAKEEKLRKELEESSAKLVEEKTSLFTNLESTKTQLSDAEERLAKLE 921

Query: 90   AQKADLETQLA-------------------------------------------ADQDKA 106
            AQ+ D   QL+                                           A+ +K 
Sbjct: 922  AQQKDASKQLSELNDQLADNEDRTADVQRAKKKIEAEVEALKKQIQDLEMSLRKAESEKQ 981

Query: 107  TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQ 166
            +KDHQIR+L DE+  QDE I KLNKEKK   E+ +K  E+LQ+ EDK NH NKVKAKLEQ
Sbjct: 982  SKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEINRKLMEDLQSEEDKGNHQNKVKAKLEQ 1041

Query: 167  TLDELEDSLEREKKLR 182
            TLD+LEDSLEREK+ R
Sbjct: 1042 TLDDLEDSLEREKRAR 1057

Muscle contraction.

Caenorhabditis elegans (taxid: 6239)

>sp|P24733|MYS_ARGIR Myosin heavy chain, striated muscle OS=Argopecten irradians PE=1 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 100/183 (54%), Gaps = 43/183 (23%)

Query: 43   LAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL--- 99
            LA+ E+ +KE+E  N  LLE+K  L   L+  +  +   +ER  KL  QKAD E+Q+   
Sbjct: 860  LAKTERIKKELEEQNVTLLEQKNDLFLQLQTLEDSMGDQEERVEKLIMQKADFESQIKEL 919

Query: 100  ----------AAD------------------------------QDKATKDHQIRNLNDEI 119
                      AAD                              QDKA KD+QI  L  EI
Sbjct: 920  EERLLDEEDAAADLEGIKKKMEADNANLKKDIGDLENTLQKAEQDKAHKDNQISTLQGEI 979

Query: 120  AHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREK 179
            + QDE I KLNKEKK   E  +KT++ LQA EDK NHLNK+KAKLEQ LDELED+LEREK
Sbjct: 980  SQQDEHIGKLNKEKKALEEANKKTSDSLQAEEDKCNHLNKLKAKLEQALDELEDNLEREK 1039

Query: 180  KLR 182
            K+R
Sbjct: 1040 KVR 1042

Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.

Aequipecten irradians (taxid: 31199)

>sp|Q60LV4|MYO3_CAEBR Myosin-3 OS=Caenorhabditis briggsae GN=myo-3 PE=3 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 108/194 (55%), Gaps = 43/194 (22%)

Query: 32   LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQ 91
            L EK+ + E ++ R E AR ++E   A L+EEK  L  +LE EK+ L+  +ER  KL   
Sbjct: 865  LAEKIQKLEEAVQRGEIARSQLETQVADLVEEKNALFLSLETEKANLADAEERNEKLNQL 924

Query: 92   KADLETQLA-------------------------------------------ADQDKATK 108
            KA LE++L                                            A+Q+K ++
Sbjct: 925  KATLESKLTDITGQLEDMQERHEDLTRQKKKTEQELSDTKKHVQDLELTLRKAEQEKQSR 984

Query: 109  DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTL 168
            DHQIR+L DE+A+QDE + KLNKEKK   E  +K  E+LQ+ EDKVNHL K++ KLEQ +
Sbjct: 985  DHQIRSLQDEMANQDESVAKLNKEKKHQEESNRKLNEDLQSEEDKVNHLEKIRNKLEQQM 1044

Query: 169  DELEDSLEREKKLR 182
            DELE++++REK+ R
Sbjct: 1045 DELEETIDREKRSR 1058

Muscle contraction.

Caenorhabditis briggsae (taxid: 6238)

>sp|P12844|MYO3_CAEEL Myosin-3 OS=Caenorhabditis elegans GN=myo-3 PE=2 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/201 (38%), Positives = 110/201 (54%), Gaps = 50/201 (24%)

Query: 25   LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
            L ++ QKLEE V        R E AR ++E+  A L+EEK  L  +LE EK+ L+  +ER
Sbjct: 865  LAVKIQKLEEAVQ-------RGEIARSQLESQVADLVEEKNALFLSLETEKANLADAEER 917

Query: 85   AAKLAAQKADLETQLA-------------------------------------------A 101
              KL   KA LE++L+                                           A
Sbjct: 918  NEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKKTDQELSDTKKHVQDLELSLRKA 977

Query: 102  DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVK 161
            +Q+K ++DH IR+L DE+A+QDE + KLNKEKK   E  +K  E+LQ+ EDKVNHL K++
Sbjct: 978  EQEKQSRDHNIRSLQDEMANQDEAVAKLNKEKKHQEESNRKLNEDLQSEEDKVNHLEKIR 1037

Query: 162  AKLEQTLDELEDSLEREKKLR 182
             KLEQ +DELE++++REK+ R
Sbjct: 1038 NKLEQQMDELEENIDREKRSR 1058

Muscle contraction.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8MJV1|MYH2_HORSE Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 43/194 (22%)

Query: 32   LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA------ 85
            ++E+  +T+  LA+ E  RKE+E     LL+EK  L   ++ E  GL+  +ER       
Sbjct: 854  MKEEFQKTKDELAKSEAKRKELEEKMVSLLKEKNDLQLQVQSEAEGLADAEERCDQLIKT 913

Query: 86   ----------------------AKLAAQKA--------------DLETQLA-ADQDKATK 108
                                  A+L A+K               DLE  LA  +++K   
Sbjct: 914  KIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHAT 973

Query: 109  DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTL 168
            +++++NL +E+A  DE I KL KEKK   E  Q+T ++LQA EDKVN L K K KLEQ +
Sbjct: 974  ENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQV 1033

Query: 169  DELEDSLEREKKLR 182
            D+LE SLE+EKKLR
Sbjct: 1034 DDLEGSLEQEKKLR 1047

Muscle contraction. Required for cytoskeleton organization.

Equus caballus (taxid: 9796)

>sp|Q9TV63|MYH2_PIG Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 43/194 (22%)

Query: 32   LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA------ 85
            ++E+  +T+  LA+ E  RKE+E     LL+EK  L   ++ E  GL+  +ER       
Sbjct: 856  MKEEFQKTKDELAKSEAKRKELEEKMVTLLKEKNDLQLQVQAEAEGLADAEERCDQLIKT 915

Query: 86   ----------------------AKLAAQKA--------------DLETQLA-ADQDKATK 108
                                  A+L A+K               DLE  LA  +++K   
Sbjct: 916  KIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHAT 975

Query: 109  DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTL 168
            +++++NL +E+A  DE I KL KEKK   E  Q+T ++LQA EDKVN L K K KLEQ +
Sbjct: 976  ENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQV 1035

Query: 169  DELEDSLEREKKLR 182
            D+LE SLE+EKKLR
Sbjct: 1036 DDLEGSLEQEKKLR 1049

Muscle contraction. Required for cytoskeleton organization.

Sus scrofa (taxid: 9823)

>sp|Q9BE41|MYH2_BOVIN Myosin-2 OS=Bos taurus GN=MYH2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 43/194 (22%)

Query: 32   LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA------ 85
            ++E+  +T+  LA+ E  RKE+E     LL+EK  L   ++ E  GL+  +ER       
Sbjct: 857  MKEEFQKTKDELAKSEAKRKELEEKMVTLLKEKNDLQLQVQSEAEGLADAEERCDQLIKT 916

Query: 86   ----------------------AKLAAQKA--------------DLETQLA-ADQDKATK 108
                                  A+L A+K               DLE  LA  +++K   
Sbjct: 917  KIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHAT 976

Query: 109  DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTL 168
            +++++NL +E+A  DE I KL KEKK   E  Q+T ++LQA EDKVN L K K KLEQ +
Sbjct: 977  ENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQV 1036

Query: 169  DELEDSLEREKKLR 182
            D+LE SLE+EKKLR
Sbjct: 1037 DDLEGSLEQEKKLR 1050

Muscle contraction. Required for cytoskeleton organization.

Bos taurus (taxid: 9913)

>sp|Q076A7|MYH2_CANFA Myosin-2 OS=Canis familiaris GN=MYH2 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 43/194 (22%)

Query: 32   LEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA------ 85
            ++E+  +T+  LA+ E  RKE+E     LL+EK  L   ++ E  GL+  +ER       
Sbjct: 857  MKEEFQKTKDELAKSEAKRKELEEKMVTLLKEKNDLQLQVQAEAEGLADAEERCDQLIKT 916

Query: 86   ----------------------AKLAAQKA--------------DLETQLA-ADQDKATK 108
                                  A+L A+K               DLE  LA  +++K   
Sbjct: 917  KIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHAT 976

Query: 109  DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTL 168
            +++++NL +E+A  DE I KL KEKK   E  Q+T ++LQA EDKVN L K K KLEQ +
Sbjct: 977  ENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQV 1036

Query: 169  DELEDSLEREKKLR 182
            D+LE SLE+EKKLR
Sbjct: 1037 DDLEGSLEQEKKLR 1050

Muscle contraction. Required for cytoskeleton organization.

Canis familiaris (taxid: 9615)

>sp|Q90339|MYSS_CYPCA Myosin heavy chain, fast skeletal muscle OS=Cyprinus carpio PE=2 SV=2

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 65/90 (72%), Gaps = 1/90 (1%)

Query: 94   DLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152
            DLE  LA  +++K   +++++NL +E+A QDE I KL KEKK   E  Q+T ++LQA ED
Sbjct: 957  DLELTLAKVEKEKHATENKVKNLTEEMASQDESIAKLTKEKKALQEAHQQTLDDLQAEED 1016

Query: 153  KVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
            KVN L K K KLEQ +D+LE SLE+EKKLR
Sbjct: 1017 KVNTLTKAKTKLEQQVDDLEGSLEQEKKLR 1046

Muscle contraction.

Cyprinus carpio (taxid: 7962)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
242006231	1978	myosin-9, putative [Pediculus humanus co	0.840	0.077	0.632	3e-51
328702403	1969	PREDICTED: myosin heavy chain, muscle is	0.780	0.072	0.643	9e-51
357625293	2002	hypothetical protein KGM_08594 [Danaus p	0.835	0.075	0.630	4e-50
312370897	1559	hypothetical protein AND_22908 [Anophele	0.840	0.098	0.607	1e-49
183979376	1965	muscle myosin heavy chain [Papilio xuthu	0.835	0.077	0.620	5e-49
234204033	791	myosin heavy chain variant B [Bombyx man	0.835	0.192	0.615	5e-49
234204059	792	myosin heavy chain variant B [Bombyx mor	0.835	0.191	0.615	5e-49
197322816	791	myosin heavy chain [Bombyx mori]	0.835	0.192	0.615	7e-49
270011842	2287	hypothetical protein TcasGA2_TC005924 [T	0.835	0.066	0.594	2e-48
189239939	1960	PREDICTED: similar to Myosin heavy chain	0.835	0.077	0.594	2e-48

>gi|242006231|ref|XP_002423957.1| myosin-9, putative [Pediculus humanus corporis] gi|212507227|gb|EEB11219.1| myosin-9, putative [Pediculus humanus corporis]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 133/196 (67%), Gaps = 43/196 (21%)

Query: 30   QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89
            +KLEEK  + + SL REEKARKE+E LN+KLLEEK  LL +LEGEK  L SIQERAAKL 
Sbjct: 850  RKLEEKCQKIQESLEREEKARKELENLNSKLLEEKQKLLDSLEGEKGALGSIQERAAKLQ 909

Query: 90   AQKADLETQL-------------------------------------------AADQDKA 106
            AQK DLE+QL                                            A+ DKA
Sbjct: 910  AQKNDLESQLNEMQDRLQQEEDARNQVSQNKKKLEQELAGLKKDLEDAELSLQKAEADKA 969

Query: 107  TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQ 166
            TKDHQIRNLNDEIAHQDELINKLNKEKK  GE  QKTAEELQAAEDK+NHLNKVKAKLEQ
Sbjct: 970  TKDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTAEELQAAEDKINHLNKVKAKLEQ 1029

Query: 167  TLDELEDSLEREKKLR 182
            TLDELEDSLEREKKLR
Sbjct: 1030 TLDELEDSLEREKKLR 1045

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702403|ref|XP_001952092.2| PREDICTED: myosin heavy chain, muscle isoform 1 [Acyrthosiphon pisum]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 131/185 (70%), Gaps = 43/185 (23%)

Query: 41   ASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA 100
            A+L REEK RKE+EALN+KLL EKT LL++LEGEK   SSIQERAAKLAAQK+DLE+QL+
Sbjct: 867  AALEREEKLRKELEALNSKLLAEKTQLLQSLEGEKGSASSIQERAAKLAAQKSDLESQLS 926

Query: 101  -------------------------------------------ADQDKATKDHQIRNLND 117
                                                       +DQDKA+KDHQIRNLND
Sbjct: 927  ETQERLTQEEDARNQLFQQKKKLEQENAGLKKDVEDLELSIQKSDQDKASKDHQIRNLND 986

Query: 118  EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177
            EIAHQDELINKLNKEKK +GE  QKTAEELQAAEDK+NHLNKVK KLEQTLDELEDSLER
Sbjct: 987  EIAHQDELINKLNKEKKLSGETAQKTAEELQAAEDKINHLNKVKNKLEQTLDELEDSLER 1046

Query: 178  EKKLR 182
            EKKLR
Sbjct: 1047 EKKLR 1051

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625293|gb|EHJ75789.1| hypothetical protein KGM_08594 [Danaus plexippus]

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 131/195 (67%), Gaps = 43/195 (22%)

Query: 31   KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
            KLEEK  + + +  +EEK RKEVEALN+KLLEEK  LL  LEGEK  LS  QERAAKL A
Sbjct: 851  KLEEKAQKAQEAFEKEEKLRKEVEALNSKLLEEKQALLSTLEGEKGSLSETQERAAKLQA 910

Query: 91   QKADLETQL-------------------------------------------AADQDKAT 107
            QKADLE+QL                                            ++QDKAT
Sbjct: 911  QKADLESQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDIEDLELSVQKSEQDKAT 970

Query: 108  KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
            KDHQIRNLNDEIAHQDELINKLNKEKK  GE TQKTAEELQAAEDKVNHLNKVK KLEQT
Sbjct: 971  KDHQIRNLNDEIAHQDELINKLNKEKKLQGESTQKTAEELQAAEDKVNHLNKVKQKLEQT 1030

Query: 168  LDELEDSLEREKKLR 182
            LDELEDSLEREKKLR
Sbjct: 1031 LDELEDSLEREKKLR 1045

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370897|gb|EFR19200.1| hypothetical protein AND_22908 [Anopheles darlingi]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/196 (60%), Positives = 129/196 (65%), Gaps = 43/196 (21%)

Query: 30   QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLA 89
            QKLEEK  + + +  +EEK RKE+EALN+KLL EKT LL +L GEK  L   QE+AAKL 
Sbjct: 1193 QKLEEKATKAQEAFEKEEKMRKELEALNSKLLAEKTALLDSLSGEKGALQEYQEKAAKLT 1252

Query: 90   AQKADLETQL-------------------------------------------AADQDKA 106
            AQK DLE QL                                             +QDKA
Sbjct: 1253 AQKNDLENQLRDTQERLAQEEDARNQLFQTKKKLEQEIGGQKKDAEDLELQIQKIEQDKA 1312

Query: 107  TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQ 166
            +KDHQIRNLNDEIAHQDELINKLNKEKK  GEV QKTAEELQAAEDKVNHLNKVKAKLEQ
Sbjct: 1313 SKDHQIRNLNDEIAHQDELINKLNKEKKMQGEVNQKTAEELQAAEDKVNHLNKVKAKLEQ 1372

Query: 167  TLDELEDSLEREKKLR 182
            TLDELEDSLEREKKLR
Sbjct: 1373 TLDELEDSLEREKKLR 1388

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979376|dbj|BAG30740.1| muscle myosin heavy chain [Papilio xuthus]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 128/195 (65%), Gaps = 43/195 (22%)

Query: 31   KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
            KLEEK  + + +  +EEK RKEVEALNAKLLEEKT LL  LEGEK  LS  QERA KL A
Sbjct: 854  KLEEKAQKAQEAFEKEEKLRKEVEALNAKLLEEKTALLSTLEGEKGSLSETQERANKLQA 913

Query: 91   QKADLETQL-------------------------------------------AADQDKAT 107
            QK DLE QL                                            ++QDKAT
Sbjct: 914  QKNDLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDIEDLELSVQKSEQDKAT 973

Query: 108  KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
            KDHQIRNLNDEIAHQDELINKLNKEKK  GE  QKT+EELQAAEDKVNHLNKVK KLEQT
Sbjct: 974  KDHQIRNLNDEIAHQDELINKLNKEKKMQGESNQKTSEELQAAEDKVNHLNKVKQKLEQT 1033

Query: 168  LDELEDSLEREKKLR 182
            LDELEDSLEREKKLR
Sbjct: 1034 LDELEDSLEREKKLR 1048

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|234204033|gb|ACQ91270.1| myosin heavy chain variant B [Bombyx mandarina]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 129/195 (66%), Gaps = 43/195 (22%)

Query: 31  KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
           KLEEK  + + +  +EEK RKEVEALNAKLLEEKT LL NLEG +  L+  QERA KL A
Sbjct: 442 KLEEKAQKAQEAFEKEEKLRKEVEALNAKLLEEKTALLANLEGNQGSLAETQERANKLQA 501

Query: 91  QKADLETQL-------------------------------------------AADQDKAT 107
           QKADLE QL                                            ++QDKAT
Sbjct: 502 QKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDVEDLELSVQKSEQDKAT 561

Query: 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
           KDHQIRNLNDEIAHQDELINKLNKEKK  GE  QKT+EELQAAEDKVNHLNKVK KLEQT
Sbjct: 562 KDHQIRNLNDEIAHQDELINKLNKEKKLQGETNQKTSEELQAAEDKVNHLNKVKQKLEQT 621

Query: 168 LDELEDSLEREKKLR 182
           LDELEDSLEREKKLR
Sbjct: 622 LDELEDSLEREKKLR 636

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|234204059|gb|ACQ91273.1| myosin heavy chain variant B [Bombyx mori]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 129/195 (66%), Gaps = 43/195 (22%)

Query: 31  KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
           KLEEK  + + +  +EEK RKEVEALNAKLLEEKT LL NLEG +  L+  QERA KL A
Sbjct: 443 KLEEKAQKAQEAFEKEEKLRKEVEALNAKLLEEKTALLANLEGNQGSLAETQERANKLQA 502

Query: 91  QKADLETQLA-------------------------------------------ADQDKAT 107
           QKADLE QL                                            ++QDKAT
Sbjct: 503 QKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDVEDLELSVQESEQDKAT 562

Query: 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
           KDHQIRNLNDEIAHQDELINKLNKEKK  GE  QKT+EELQAAEDKVNHLNKVK KLEQT
Sbjct: 563 KDHQIRNLNDEIAHQDELINKLNKEKKLQGETNQKTSEELQAAEDKVNHLNKVKQKLEQT 622

Query: 168 LDELEDSLEREKKLR 182
           LDELEDSLEREKKLR
Sbjct: 623 LDELEDSLEREKKLR 637

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197322816|gb|ACH69159.1| myosin heavy chain [Bombyx mori]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 129/195 (66%), Gaps = 43/195 (22%)

Query: 31  KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
           KLEEK  + + +  +EEK RKEVEALNAKLLEEKT LL NLEG +  L+  QERA KL A
Sbjct: 442 KLEEKAQKAQEAFEKEEKLRKEVEALNAKLLEEKTALLANLEGNQGSLAETQERANKLQA 501

Query: 91  QKADLETQL-------------------------------------------AADQDKAT 107
           QKADLE QL                                            ++QDKAT
Sbjct: 502 QKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDVEDLELSVQKSEQDKAT 561

Query: 108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
           KDHQIRNLNDEIAHQDELINKLNKEKK  GE  QKT+EELQAAEDKVNHLNKVK KLEQT
Sbjct: 562 KDHQIRNLNDEIAHQDELINKLNKEKKLQGETNQKTSEELQAAEDKVNHLNKVKQKLEQT 621

Query: 168 LDELEDSLEREKKLR 182
           LDELEDSLEREKKLR
Sbjct: 622 LDELEDSLEREKKLR 636

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011842|gb|EFA08290.1| hypothetical protein TcasGA2_TC005924 [Tribolium castaneum]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 133/195 (68%), Gaps = 43/195 (22%)

Query: 31   KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
            KLEEK A+ + +  RE KA+KE+E L +KLL EKT LL +LEGEK  LS +QERA KL A
Sbjct: 1178 KLEEKAAKAQEAYEREAKAKKELEGLYSKLLAEKTELLSSLEGEKGSLSEVQERANKLQA 1237

Query: 91   QKADLETQLA-------------------------------------------ADQDKAT 107
            QK+DLE+QL+                                           ++QDKAT
Sbjct: 1238 QKSDLESQLSETQDRLSQEEDARNQLMQQKKKLEQEISGYKKDIEDLELNLQKSEQDKAT 1297

Query: 108  KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
            KDHQIRNLNDEIAHQDELINKLNKEKK +GE +Q+ +EELQAAEDKVNHLNKVKAKLEQT
Sbjct: 1298 KDHQIRNLNDEIAHQDELINKLNKEKKLSGENSQRVSEELQAAEDKVNHLNKVKAKLEQT 1357

Query: 168  LDELEDSLEREKKLR 182
            LDELEDSLEREKKLR
Sbjct: 1358 LDELEDSLEREKKLR 1372

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239939|ref|XP_001813596.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 3 [Tribolium castaneum]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 133/195 (68%), Gaps = 43/195 (22%)

Query: 31   KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA 90
            KLEEK A+ + +  RE KA+KE+E L +KLL EKT LL +LEGEK  LS +QERA KL A
Sbjct: 851  KLEEKAAKAQEAYEREAKAKKELEGLYSKLLAEKTELLSSLEGEKGSLSEVQERANKLQA 910

Query: 91   QKADLETQLA-------------------------------------------ADQDKAT 107
            QK+DLE+QL+                                           ++QDKAT
Sbjct: 911  QKSDLESQLSETQDRLSQEEDARNQLMQQKKKLEQEISGYKKDIEDLELNLQKSEQDKAT 970

Query: 108  KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQT 167
            KDHQIRNLNDEIAHQDELINKLNKEKK +GE +Q+ +EELQAAEDKVNHLNKVKAKLEQT
Sbjct: 971  KDHQIRNLNDEIAHQDELINKLNKEKKLSGENSQRVSEELQAAEDKVNHLNKVKAKLEQT 1030

Query: 168  LDELEDSLEREKKLR 182
            LDELEDSLEREKKLR
Sbjct: 1031 LDELEDSLEREKKLR 1045

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
FB|FBgn0264695	1962	Mhc "Myosin heavy chain" [Dros	0.489	0.045	0.855	2.1e-34
WB|WBGene00019064	1974	myo-5 [Caenorhabditis elegans	0.494	0.045	0.648	8.3e-24
WB|WBGene00006789	1966	unc-54 [Caenorhabditis elegans	0.560	0.051	0.592	1.3e-23
UNIPROTKB|Q60LV4	1969	myo-3 "Myosin-3" [Caenorhabdit	0.489	0.045	0.566	1.3e-20
WB|WBGene00003515	1969	myo-3 [Caenorhabditis elegans	0.489	0.045	0.555	2.7e-20
UNIPROTKB|P12844	1969	myo-3 "Myosin-3" [Caenorhabdit	0.489	0.045	0.555	2.7e-20
UNIPROTKB|F1N775	1937	MYH8 "Uncharacterized protein"	0.560	0.052	0.504	1.4e-19
UNIPROTKB|F1SS61	1943	MYH3 "Uncharacterized protein"	0.560	0.052	0.466	9.9e-19
ZFIN|ZDB-GENE-040426-1554	1622	zgc:66156 "zgc:66156" [Danio r	0.560	0.062	0.485	1e-18
ZFIN|ZDB-GENE-030131-5336	1936	wu:fd14a01 "wu:fd14a01" [Danio	0.560	0.052	0.485	1.6e-18

FB|FBgn0264695 Mhc "Myosin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 383 (139.9 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 77/90 (85%), Positives = 81/90 (90%)

Query:    94 DLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152
             DLE  +  A+QDKATKDHQIRNLNDEIAHQDELINKLNKEKK  GE  QKT EELQAAED
Sbjct:   955 DLELNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAED 1014

Query:   153 KVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
             K+NHLNKVKAKLEQTLDELEDSLEREKK+R
Sbjct:  1015 KINHLNKVKAKLEQTLDELEDSLEREKKVR 1044

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005859 "muscle myosin complex" evidence=ISS;IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0016459 "myosin complex" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0030239 "myofibril assembly" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0042692 "muscle cell differentiation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0060361 "flight" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0031033 "myosin filament organization" evidence=IMP

WB|WBGene00019064 myo-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 289 (106.8 bits), Expect = 8.3e-24, P = 8.3e-24
 Identities = 59/91 (64%), Positives = 71/91 (78%)

Query:    93 ADLETQLAADQ-DKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAE 151
             +DLET +   + +K  KDHQIR+L DEI  QDE+I+KLNKEKK   EV +K  E++QA E
Sbjct:   965 SDLETTIKKQESEKQAKDHQIRSLQDEIQSQDEVISKLNKEKKHQEEVNRKLLEDIQAEE 1024

Query:   152 DKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
             DKVNHLNK KAKLE TLDELED+LEREK+ R
Sbjct:  1025 DKVNHLNKTKAKLESTLDELEDTLEREKRGR 1055

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

WB|WBGene00006789 unc-54 [Caenorhabditis elegans (taxid:6239)]

 Score = 287 (106.1 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 61/103 (59%), Positives = 73/103 (70%)

Query:    81 IQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
             I+     L  Q  DLE  L  A+ +K +KDHQIR+L DE+  QDE I KLNKEKK   E+
Sbjct:   955 IEAEVEALKKQIQDLEMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIAKLNKEKKHQEEI 1014

Query:   140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
              +K  E+LQ+ EDK NH NKVKAKLEQTLD+LEDSLEREK+ R
Sbjct:  1015 NRKLMEDLQSEEDKGNHQNKVKAKLEQTLDDLEDSLEREKRAR 1057

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0006936 "muscle contraction" evidence=IMP

GO:0048017 "inositol lipid-mediated signaling" evidence=IPI

GO:0043050 "pharyngeal pumping" evidence=IPI

GO:0018991 "oviposition" evidence=IMP

GO:0005859 "muscle myosin complex" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

UNIPROTKB|Q60LV4 myo-3 "Myosin-3" [Caenorhabditis briggsae (taxid:6238)]

 Score = 259 (96.2 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 51/90 (56%), Positives = 70/90 (77%)

Query:    94 DLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152
             DLE  L  A+Q+K ++DHQIR+L DE+A+QDE + KLNKEKK   E  +K  E+LQ+ ED
Sbjct:   969 DLELTLRKAEQEKQSRDHQIRSLQDEMANQDESVAKLNKEKKHQEESNRKLNEDLQSEED 1028

Query:   153 KVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
             KVNHL K++ KLEQ +DELE++++REK+ R
Sbjct:  1029 KVNHLEKIRNKLEQQMDELEETIDREKRSR 1058

GO:0003774 "motor activity" evidence=ISS

GO:0007626 "locomotory behavior" evidence=ISS

GO:0031672 "A band" evidence=ISS

WB|WBGene00003515 myo-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 256 (95.2 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query:    94 DLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152
             DLE  L  A+Q+K ++DH IR+L DE+A+QDE + KLNKEKK   E  +K  E+LQ+ ED
Sbjct:   969 DLELSLRKAEQEKQSRDHNIRSLQDEMANQDEAVAKLNKEKKHQEESNRKLNEDLQSEED 1028

Query:   153 KVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
             KVNHL K++ KLEQ +DELE++++REK+ R
Sbjct:  1029 KVNHLEKIRNKLEQQMDELEENIDREKRSR 1058

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0031672 "A band" evidence=IDA

UNIPROTKB|P12844 myo-3 "Myosin-3" [Caenorhabditis elegans (taxid:6239)]

 Score = 256 (95.2 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query:    94 DLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED 152
             DLE  L  A+Q+K ++DH IR+L DE+A+QDE + KLNKEKK   E  +K  E+LQ+ ED
Sbjct:   969 DLELSLRKAEQEKQSRDHNIRSLQDEMANQDEAVAKLNKEKKHQEESNRKLNEDLQSEED 1028

Query:   153 KVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
             KVNHL K++ KLEQ +DELE++++REK+ R
Sbjct:  1029 KVNHLEKIRNKLEQQMDELEENIDREKRSR 1058

GO:0031672 "A band" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0003774 "motor activity" evidence=IMP

UNIPROTKB|F1N775 MYH8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 243 (90.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 52/103 (50%), Positives = 73/103 (70%)

Query:    81 IQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
             +++  A+L     DLE  LA  +++K   +++++NL +E+A  DE+I KL KEKK   E 
Sbjct:   946 LEDECAELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEVIAKLTKEKKALQEA 1005

Query:   140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
              Q+T ++LQA EDKVN LNK KAKLEQ +D+LE SLE+EKKLR
Sbjct:  1006 HQQTLDDLQAEEDKVNTLNKAKAKLEQQVDDLEGSLEQEKKLR 1048

GO:0016459 "myosin complex" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1SS61 MYH3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
 Identities = 48/103 (46%), Positives = 73/103 (70%)

Query:    81 IQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
             +++  ++L     DLE  LA  +++K   +++++NL +E+A  DE I KL +EKK   E 
Sbjct:   945 LEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEELAGLDETIAKLTREKKALQEA 1004

Query:   140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
              Q+T ++LQA EDKVN L+K+K+KLEQ +D+LE SLE+EKKLR
Sbjct:  1005 HQQTLDDLQAEEDKVNSLSKIKSKLEQQVDDLESSLEQEKKLR 1047

GO:0043292 "contractile fiber" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1554 zgc:66156 "zgc:66156" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 50/103 (48%), Positives = 72/103 (69%)

Query:    81 IQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
             +++  ++L     DLE  LA  +++K   +++++NL +E+A QDE I KL KEKK   E 
Sbjct:   946 LEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMASQDESIAKLTKEKKALQEA 1005

Query:   140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
              Q+T ++LQA EDKVN L K K+KLEQ +D+LE SLE+EKKLR
Sbjct:  1006 HQQTLDDLQAEEDKVNTLTKSKSKLEQQVDDLEGSLEQEKKLR 1048

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5336 wu:fd14a01 "wu:fd14a01" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 50/103 (48%), Positives = 72/103 (69%)

Query:    81 IQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
             +++  ++L     DLE  LA  +++K   +++++NL +E+A QDE I KL KEKK   E 
Sbjct:   945 LEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMASQDESIAKLTKEKKALQEA 1004

Query:   140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR 182
              Q+T ++LQA EDKVN L K K+KLEQ +D+LE SLE+EKKLR
Sbjct:  1005 HQQTLDDLQAEEDKVNTLTKSKSKLEQQVDDLEGSLEQEKKLR 1047

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05661	MYSA_DROME	No assigned EC number	0.6	0.8351	0.0774	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	182
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 4   LLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEE 63
           L    E  +     +    + LE   ++L+E++ + E  L   E+A  +++    +L E+
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 64  KTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQ 122
           +  L + LE  +  L   + R   L  +   LE +    +Q+    + +I  L +++   
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
           +E + +L KE ++  E  ++   E +  ED++  L + K +LE+ L ELE  L   K+
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 42/178 (23%), Positives = 88/178 (49%), Gaps = 6/178 (3%)

Query: 3   DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62
            L     S +     +  + + LE + ++L+ ++A  E  L + +   +E+E    +L E
Sbjct: 692 SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751

Query: 63  EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQ 122
           E   L + LE  +  L S++E  AKL  +  +LE +  A Q++      +  L +E+   
Sbjct: 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE------LEELEEELEEA 805

Query: 123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
           +  ++ L +E +   +  ++  +E++  E+++  L +   +LE+ L+ELE  LE  K+
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 25  LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
           LE   ++LEE++ + E  LA  E   +E+EA   +L EE   L + L+  ++ L+ + E 
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818

Query: 85  AAKLAAQKADLETQLAA--------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
           AA L  +   LE ++AA        ++        I +L  EI   +ELI +L  E +  
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878

Query: 137 GEVTQKTAEELQAAED-------KVNHLNKVKAKLEQTLDELEDSLEREK 179
                   E L            ++  L   +++L + L+EL + L + +
Sbjct: 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 21  RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS 80
              +L LR ++L E++ + +  L   E+  +E+ A   +L E+   L   +   +  +  
Sbjct: 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285

Query: 81  IQERAAKLAAQKADLETQLA-ADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEV 139
           +Q+    LA + + LE Q     +  A  + Q+  L  ++   +  +++L +E  +  E 
Sbjct: 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345

Query: 140 TQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
            ++  EEL++ E ++  L     +LE  L+ELE+ LE  + 
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG0161|consensus	1930		99.91
KOG0161|consensus	1930		98.34
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.87
PRK11637	428	AmiB activator; Provisional	96.93
KOG1003|consensus	205		96.73
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.7
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.51
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.49
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.48
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.33
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.33
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.11
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.05
KOG0250|consensus	1074		95.93
PRK02224	880	chromosome segregation protein; Provisional	95.84
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.77
PRK02224	880	chromosome segregation protein; Provisional	95.43
KOG0250|consensus	1074		95.42
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.98
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	94.91
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.59
KOG0612|consensus	1317		94.35
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.05
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.36
KOG0964|consensus	1200		93.03
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.91
KOG0933|consensus	1174		92.81
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.67
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.4
KOG0977|consensus	546		92.18
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	92.08
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.03
PRK04778	569	septation ring formation regulator EzrA; Provision	91.95
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.85
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	91.69
KOG0964|consensus	1200		91.27
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.2
KOG0977|consensus	546		91.15
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.05
KOG0971|consensus	1243		90.77
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.23
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.0
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.89
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	89.83
PRK04863	1486	mukB cell division protein MukB; Provisional	89.7
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.23
KOG0612|consensus	1317		88.23
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.18
KOG0978|consensus	698		88.05
KOG1029|consensus	1118		87.9
PRK09343	121	prefoldin subunit beta; Provisional	87.89
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	87.57
KOG0999|consensus	772		87.52
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	86.84
KOG0996|consensus	1293		86.78
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.66
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	86.5
PRK11637	428	AmiB activator; Provisional	85.71
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	85.34
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.18
PRK09039	343	hypothetical protein; Validated	84.07
PRK09039	343	hypothetical protein; Validated	83.36
KOG4674|consensus	1822		83.32
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.24
PRK04863	1486	mukB cell division protein MukB; Provisional	83.05
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	82.46
PHA02562	562	46 endonuclease subunit; Provisional	82.06
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	81.44
KOG4643|consensus	1195		81.37
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.07
PRK04778	569	septation ring formation regulator EzrA; Provision	81.02
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	80.78
PF15294	278	Leu_zip: Leucine zipper	80.63

>KOG0161|consensus

Probab=99.91  E-value=6e-23  Score=206.08  Aligned_cols=174  Identities=40%  Similarity=0.526  Sum_probs=169.5

Q ss_pred             hhHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy4658           6 AAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA   85 (182)
Q Consensus         6 ~~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~   85 (182)
                      -.++|++|||||++++   .+++|.++++++..+++.+.+.+..+.+++..+..+..++++|+.+|+++++.++++++.+
T Consensus       820 W~~Lf~kvkPLL~~~~---~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~  896 (1930)
T KOG0161|consen  820 WWRLFTKVKPLLKVTK---TEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELL  896 (1930)
T ss_pred             HHHHHHHHHHHHHhhh---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-------------------------------------------hhhhhhhHHhhhhhHHHHHhh
Q psy4658          86 AKLAAQKADLETQLAA-------------------------------------------DQDKATKDHQIRNLNDEIAHQ  122 (182)
Q Consensus        86 ~~L~~~K~eLE~~l~e-------------------------------------------e~EK~~~e~kik~l~~el~~~  122 (182)
                      .++...+.+++..+.+                                           +.+++++++++++|++++..+
T Consensus       897 ~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~  976 (1930)
T KOG0161|consen  897 ERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSL  976 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987                                           678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhhC
Q psy4658         123 DELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR  182 (182)
Q Consensus       123 ~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~r  182 (182)
                      ++.+++|+++++.++++++++.++++.++++++++.|.+.+|++++++++..|+++++.|
T Consensus       977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen  977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIR 1036 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998865

>KOG0161|consensus

Probab=98.34  E-value=0.0001  Score=76.34  Aligned_cols=141  Identities=28%  Similarity=0.363  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------hhhhhhhHHhhh
Q psy4658          42 SLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--------DQDKATKDHQIR  113 (182)
Q Consensus        42 ~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--------e~EK~~~e~kik  113 (182)
                      ++.........+++.+.+|..++..+...++...+.++..+++...|.+.+..|+..|.+        ..-.+..+...+
T Consensus       965 ~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen  965 KLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444446777888999999999999999999999999999999999999999998        222556666777


Q ss_pred             hhHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhhC
Q psy4658         114 NLNDEIAHQDELINKLNKEK-------KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLR  182 (182)
Q Consensus       114 ~l~~el~~~~e~i~KL~kEK-------k~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~r  182 (182)
                      ++.+++....++|.-+...+       +..+..+..+...+..+..-++.+++....|+..|.+|.+.|+.|+..|
T Consensus      1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666555444444       4445577778888888888899999999999999999999999988654

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.87  E-value=0.0056  Score=51.03  Aligned_cols=156  Identities=26%  Similarity=0.380  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH----------
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKAD----------   94 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~e----------   94 (182)
                      ...++......+..+...+......+...+..+..|..-...|...|..-.+.+..+..++..+.+.-.+          
T Consensus         6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~   85 (237)
T PF00261_consen    6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN   85 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555666666666666666666666666666666666555555555555544444444433332          


Q ss_pred             -----------HHHHHhh----------------------h--hh-----hhhhHHhhhhhHHHHHhhHHHH-------H
Q psy4658          95 -----------LETQLAA----------------------D--QD-----KATKDHQIRNLNDEIAHQDELI-------N  127 (182)
Q Consensus        95 -----------LE~~l~e----------------------e--~E-----K~~~e~kik~l~~el~~~~e~i-------~  127 (182)
                                 ||.++.+                      +  .+     =-..+.+|..|+.++.....++       .
T Consensus        86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~  165 (237)
T PF00261_consen   86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE  165 (237)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence                       2222222                      1  11     1144455555555555544443       4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658         128 KLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK  180 (182)
Q Consensus       128 KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk  180 (182)
                      +.+.--..++..+..+...|..-+..+........+|+..|+.|++.|..++.
T Consensus       166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~  218 (237)
T PF00261_consen  166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE  218 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444566677899999999999999999999999999999999999987764

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK11637 AmiB activator; Provisional

Probab=96.93  E-value=0.29  Score=44.10  Aligned_cols=77  Identities=22%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA  101 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e  101 (182)
                      ....+.....++..+...+.........++..+..+..+...+..++..-...+...+.....+...-..++..+..
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~  121 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA  121 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777776666666666666666666666666666666666666666666666665555555555444

>KOG1003|consensus

Probab=96.73  E-value=0.25  Score=40.41  Aligned_cols=152  Identities=23%  Similarity=0.288  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQ----ERAAKLAAQKADLETQLA  100 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~E----e~~~~L~~~K~eLE~~l~  100 (182)
                      +++.+......+..+.......+..++-|+....++....+.+..||..-+-...++.    +..-.|.-...+||.-..
T Consensus        23 aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee  102 (205)
T KOG1003|consen   23 AQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE  102 (205)
T ss_pred             HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4444555555555555555555666777888888888888888888877655555554    444444444445554221


Q ss_pred             hhhhhhhhHHhhhhhHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHH
Q psy4658         101 ADQDKATKDHQIRNLNDEIAHQDELINK-------LNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELED  173 (182)
Q Consensus       101 ee~EK~~~e~kik~l~~el~~~~e~i~K-------L~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~  173 (182)
                      -   --..+++|..|.+++.....++..       +...--..+..+..+++.|-.-+-++.++.+.-.+|+-.+||||+
T Consensus       103 r---aE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~  179 (205)
T KOG1003|consen  103 R---AEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEE  179 (205)
T ss_pred             H---HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHH
Confidence            1   224566677777776665544443       444444456688899999999999999999999999999999999


Q ss_pred             hHHHHh
Q psy4658         174 SLEREK  179 (182)
Q Consensus       174 ~Le~Ek  179 (182)
                      .+...+
T Consensus       180 kl~~~k  185 (205)
T KOG1003|consen  180 KLEEAK  185 (205)
T ss_pred             hhHHHH
Confidence            987654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.70  E-value=0.73  Score=45.64  Aligned_cols=55  Identities=24%  Similarity=0.225  Sum_probs=21.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHH
Q psy4658         118 EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELE  172 (182)
Q Consensus       118 el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE  172 (182)
                      .+......+..+..+...+...+..+...+..-......+......+...+..++
T Consensus       442 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~  496 (1164)
T TIGR02169       442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE  496 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333444333344444444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.51  E-value=0.86  Score=43.95  Aligned_cols=120  Identities=25%  Similarity=0.387  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh------------------------------
Q psy4658          52 EVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA------------------------------  101 (182)
Q Consensus        52 elE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e------------------------------  101 (182)
                      .+...+..|....+.|..+.+.++.++.-.|.+.......+..+|.+|.+                              
T Consensus       464 qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~  543 (697)
T PF09726_consen  464 QLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESC  543 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHH
Confidence            34555666777777777788888888888888888888888888888877                              


Q ss_pred             hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHhhhhHH-------HHHHHHHhh
Q psy4658         102 DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQA-------GEVTQKTAEELQAAEDKVNHLN-------KVKAKLEQT  167 (182)
Q Consensus       102 e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~l-------ee~~~~~~~~l~~Ee~k~~~l~-------K~k~Kle~~  167 (182)
                      ..-++..|..++.|..++...+|.+..+..+...+       +....-+...|++-.||..||.       ++|.-|-+.
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa  623 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA  623 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            11245667778888888888888888888776322       2246677788888888887774       445555555


Q ss_pred             HHHH
Q psy4658         168 LDEL  171 (182)
Q Consensus       168 l~dl  171 (182)
                      +.|-
T Consensus       624 Lg~a  627 (697)
T PF09726_consen  624 LGDA  627 (697)
T ss_pred             HHHH
Confidence            4443

; GO: 0016021 integral to membrane

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.49  E-value=0.4  Score=39.91  Aligned_cols=62  Identities=24%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHH
Q psy4658         107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDEL  171 (182)
Q Consensus       107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dl  171 (182)
                      ..+.+|+.|...+........-..+....|+..+..+-+.|.....+..   .+...|.+++.+|
T Consensus       173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~---~~~~eld~~l~el  234 (237)
T PF00261_consen  173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK---KVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence            3444555555555555555555555555555555555555554444443   3334444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.48  E-value=0.0007  Score=66.12  Aligned_cols=80  Identities=23%  Similarity=0.421  Sum_probs=0.0

Q ss_pred             hhhhhhHHhhhhhHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658         103 QDKATKDHQIRNLNDEIAH-------QDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL  175 (182)
Q Consensus       103 ~EK~~~e~kik~l~~el~~-------~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L  175 (182)
                      +.|...+.+++.++..+..       ....++.+...+..++..+..+...|...+.+++++++.+..|+++|+|+...|
T Consensus       173 k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~l  252 (859)
T PF01576_consen  173 KAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQL  252 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3455666666666666555       456677777888888889999999999999999999999999999999999999


Q ss_pred             HHHhhhC
Q psy4658         176 EREKKLR  182 (182)
Q Consensus       176 e~Ekk~r  182 (182)
                      +.|.+.+
T Consensus       253 eeEtr~k  259 (859)
T PF01576_consen  253 EEETRAK  259 (859)
T ss_dssp             -------
T ss_pred             HhHhhhh
Confidence            9887753

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.33  E-value=1.3  Score=44.82  Aligned_cols=63  Identities=29%  Similarity=0.445  Sum_probs=27.1

Q ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658         113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL  175 (182)
Q Consensus       113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L  175 (182)
                      ..+...+..+...+..+......+......+......-++..+.+...+..+..++..++..+
T Consensus       838 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~  900 (1163)
T COG1196         838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL  900 (1163)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444444444444444444444444444433

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.33  E-value=1.2  Score=43.83  Aligned_cols=47  Identities=36%  Similarity=0.355  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658          27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG   73 (182)
Q Consensus        27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~   73 (182)
                      .++..+...+..+...+.........++..+..+..+...+...+..
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  723 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE  723 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444454555444444444444444444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.11  E-value=0.7  Score=38.91  Aligned_cols=117  Identities=21%  Similarity=0.277  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHHHhhh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI--QERAAKLAAQKADLETQLAAD  102 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~--Ee~~~~L~~~K~eLE~~l~ee  102 (182)
                      ..+.+.+...++..++..+........+++.+...+..+...+..++..-...+..+  +..+..|             .
T Consensus        29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL-------------~   95 (239)
T COG1579          29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRAL-------------N   95 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-------------H
Confidence            556666666666666666666666666655555555555555544443332222111  1111111             3


Q ss_pred             hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy4658         103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKV  154 (182)
Q Consensus       103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~  154 (182)
                      .+-..+..++.+|++++..+.+.+.++.++...+.+.+..+..++.+.+..+
T Consensus        96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~  147 (239)
T COG1579          96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL  147 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666677888888988888899998888888888887777777655544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.05  E-value=1.1  Score=40.63  Aligned_cols=150  Identities=18%  Similarity=0.229  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----
Q psy4658          27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-----  101 (182)
Q Consensus        27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-----  101 (182)
                      +.+.....++..+...+......+..|+..+.++..+.+.+..+|-.....+.......+.+......|+.+-.+     
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777777777777777777777777777777777777777776666666666666666665555544422     


Q ss_pred             --------------------------------------------------------hhhhhhhHHhhhhhHHHHHhhHHH
Q psy4658         102 --------------------------------------------------------DQDKATKDHQIRNLNDEIAHQDEL  125 (182)
Q Consensus       102 --------------------------------------------------------e~EK~~~e~kik~l~~el~~~~e~  125 (182)
                                                                              -..++....+-..+..-+..+.+.
T Consensus       118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q  197 (420)
T COG4942         118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ  197 (420)
T ss_pred             HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                    111333444444444444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         126 INKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       126 i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      ..+|..-...-..-.+++..++.....+...|......|...|.-++....
T Consensus       198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            555555444445566778888888888888888888888888888874433

>KOG0250|consensus

Probab=95.93  E-value=2  Score=43.06  Aligned_cols=144  Identities=19%  Similarity=0.302  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhh
Q psy4658          26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQD  104 (182)
Q Consensus        26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~E  104 (182)
                      +.++....+.+...++.........++...++..+.+-.+....+++.-.+......+.+..+.+.-..+-..+.+ +.+
T Consensus       280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~  359 (1074)
T KOG0250|consen  280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE  359 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444443333333322222222222222111111 122


Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL  175 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L  175 (182)
                      ....++.++.+...+..+..+|+.+.++-      ++.+..++..-+++.++|.+...+++.++..|.+.+
T Consensus       360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~  424 (1074)
T KOG0250|consen  360 IREIENSIRKLKKEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINSLREEL  424 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344444444444444444444444332      345555555566666666666666666665555443

>PRK02224 chromosome segregation protein; Provisional

Probab=95.84  E-value=2  Score=41.89  Aligned_cols=46  Identities=22%  Similarity=0.355  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHH
Q psy4658         126 INKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDEL  171 (182)
Q Consensus       126 i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dl  171 (182)
                      +..+......+......+...+..-+.+++.+......++..++++
T Consensus       351 ~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344444444444444443334444444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.77  E-value=0.67  Score=35.89  Aligned_cols=131  Identities=24%  Similarity=0.300  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy4658          29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATK  108 (182)
Q Consensus        29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~  108 (182)
                      |..+.-+...+.+.....+...+.++..+..+..+++.|...++.--..+..+++....+   +..++..     ++...
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~---k~~lee~-----~~~~~   73 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA---KEKLEES-----EKRKS   73 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhH-----HHHHH
Confidence            344555555566666666666666666666666666666555544443333333322211   1111110     11100


Q ss_pred             HHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         109 DHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       109 e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                               ....+...|.-|..+....+..+..+...|..-.-++.++.+...-|+...+++|..++
T Consensus        74 ---------~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   74 ---------NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             ---------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence                     00122233333333333344444555666666666666666666666666666666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK02224 chromosome segregation protein; Provisional

Probab=95.43  E-value=2.9  Score=40.82  Aligned_cols=73  Identities=26%  Similarity=0.358  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658          28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA  101 (182)
Q Consensus        28 El~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e  101 (182)
                      .+..++.++..++..+...+...+ ....+..+......+...+....+.+.+.++++..|...-..|+..+.+
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~-~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~  555 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE  555 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444433333222 2344444555555555555555666666666666666666666655543

>KOG0250|consensus

Probab=95.42  E-value=3.3  Score=41.54  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy4658           7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAA   86 (182)
Q Consensus         7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~   86 (182)
                      +-.|-.++-|   .+   +++++..+++....+.+++.........+..++....+.++.+-....+-...+.++-....
T Consensus       274 ~~V~~~~~ql---~~---~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~  347 (1074)
T KOG0250|consen  274 AWVNEVERQL---NN---QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD  347 (1074)
T ss_pred             HHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            4455666664   55   88888888888888888888877777666666666555555555555444444444444444


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4658          87 KLAAQKADLETQLAA  101 (182)
Q Consensus        87 ~L~~~K~eLE~~l~e  101 (182)
                      .+....++++..+.+
T Consensus       348 ~~~re~~~~~~~~~~  362 (1074)
T KOG0250|consen  348 DLRREVNDLKEEIRE  362 (1074)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

>TIGR00606 rad50 rad50

Probab=94.98  E-value=4.3  Score=41.75  Aligned_cols=15  Identities=27%  Similarity=0.410  Sum_probs=6.9

Q ss_pred             HHHHHHhhHHHHHHh
Q psy4658         160 VKAKLEQTLDELEDS  174 (182)
Q Consensus       160 ~k~Kle~~l~dlE~~  174 (182)
                      .+..|+..++++...
T Consensus       882 ~r~~le~~L~el~~e  896 (1311)
T TIGR00606       882 RRQQFEEQLVELSTE  896 (1311)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=94.91  E-value=0.0071  Score=59.18  Aligned_cols=143  Identities=22%  Similarity=0.366  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------hhhh
Q psy4658          34 EKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--------DQDK  105 (182)
Q Consensus        34 eel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--------e~EK  105 (182)
                      ..|..+.+.+......+..|+.....|..+..|+...|......++..+-+...+.+.-.++-..+.+        ..+.
T Consensus       328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~  407 (859)
T PF01576_consen  328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREA  407 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444555555555555555555544444444444333333333333333222        4455


Q ss_pred             hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         106 ATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       106 ~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      ......+..|...+....+.+..+.++.+.|...+..+.+.+.....-+..|.+.+..|++.++++...|+
T Consensus       408 r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le  478 (859)
T PF01576_consen  408 RELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE  478 (859)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777788888888888899999999999999999999999998888899999999999998888766554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.59  E-value=4.1  Score=38.27  Aligned_cols=57  Identities=19%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy4658          36 VAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQK   92 (182)
Q Consensus        36 l~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K   92 (182)
                      +...++.........+++......+..++..|..++..-...+...++....|....
T Consensus       180 L~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  180 LEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444445555555665665555544444444444444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0612|consensus

Probab=94.35  E-value=6.9  Score=39.93  Aligned_cols=107  Identities=21%  Similarity=0.351  Sum_probs=55.3

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hhhh---hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHH
Q psy4658          66 TLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-----DQDK---ATKDHQIRNLNDEIAHQDELINKLNKEKKQAG  137 (182)
Q Consensus        66 ~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-----e~EK---~~~e~kik~l~~el~~~~e~i~KL~kEKk~le  137 (182)
                      ++.-+++.+.....+.++++..|...+..|......     +..+   .....-+..+...|..+...+..+.++.+.++
T Consensus       571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~  650 (1317)
T KOG0612|consen  571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE  650 (1317)
T ss_pred             hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence            455667777777778888888888877766655443     1111   11111133333334443333333333333332


Q ss_pred             HHHHHHHHHHHHhhHhhhhHHH--HHHHHHhhHHHHHHhHHHHh
Q psy4658         138 EVTQKTAEELQAAEDKVNHLNK--VKAKLEQTLDELEDSLEREK  179 (182)
Q Consensus       138 e~~~~~~~~l~~Ee~k~~~l~K--~k~Kle~~l~dlE~~Le~Ek  179 (182)
                      +       .=-...+..++..+  ++.+++-.+.-+++.++++.
T Consensus       651 e-------l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~  687 (1317)
T KOG0612|consen  651 E-------LKRENQERISDSEKEALEIKLERKLKMLQNELEQEN  687 (1317)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2       11222333444444  66777777777777776654

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.05  E-value=5.3  Score=37.50  Aligned_cols=55  Identities=25%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy4658          42 SLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLE   96 (182)
Q Consensus        42 ~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE   96 (182)
                      .+.+....+.+|...+..|..+...|..++..-...+....+.+..|.....++.
T Consensus       144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~  198 (546)
T PF07888_consen  144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT  198 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444445444444444444444444444444554444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.36  E-value=3.7  Score=33.48  Aligned_cols=114  Identities=17%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy4658          27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKA  106 (182)
Q Consensus        27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~  106 (182)
                      .-+..+.+++..++......+....+       +.++-..|.++|..-...+.+.......-.+.|..|...-   .--.
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~e-------i~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k---~rl~   96 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAE-------ISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK---ARLK   96 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            44556666666666555555444444       4444444444444444444444433333333333332211   0012


Q ss_pred             hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658         107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAA  150 (182)
Q Consensus       107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~E  150 (182)
                      .++..++.|.-+...+...+.++..|+..|.........+++.-
T Consensus        97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk  140 (201)
T PF13851_consen   97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK  140 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788888888899999999999999988888888877753

>KOG0964|consensus

Probab=93.03  E-value=6.2  Score=39.53  Aligned_cols=48  Identities=15%  Similarity=0.229  Sum_probs=23.0

Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED  152 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~  152 (182)
                      ....+++++.|..+..+++..-++..+.|-.++-.+.++.+.+.....
T Consensus       274 i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q  321 (1200)
T KOG0964|consen  274 IKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQ  321 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhh
Confidence            334455555555555555555555555554444444444444444333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.91  E-value=9.7  Score=37.00  Aligned_cols=135  Identities=21%  Similarity=0.284  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---  101 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---  101 (182)
                      .-..+..++.+++.++-.+....+.+..|-..+..+......+..+-..-++.+-+.-.+=.||..--.+||...-.   
T Consensus        32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK  111 (717)
T PF09730_consen   32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK  111 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34556778888888888888888888888888888888877777777777777777777777777777777754332   


Q ss_pred             --------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy4658         102 --------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK  159 (182)
Q Consensus       102 --------e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K  159 (182)
                              +.+=-+..|-|+.|.+++..+.-++.-+.+=|...+-...+.++.|+.|-+..++|.|
T Consensus       112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk  177 (717)
T PF09730_consen  112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK  177 (717)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    4445577888999999999999999999888888888999999999999999888877

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0933|consensus

Probab=92.81  E-value=12  Score=37.72  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658          27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLA  100 (182)
Q Consensus        27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~  100 (182)
                      .++..+..+|+.++-.++......+.-+..+..|.-|...+...+..-...+...+..+..|...-..|+..+.
T Consensus       787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~  860 (1174)
T KOG0933|consen  787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD  860 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.67  E-value=9.6  Score=36.37  Aligned_cols=95  Identities=27%  Similarity=0.418  Sum_probs=53.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHH---hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658          75 KSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDH---QIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAA  150 (182)
Q Consensus        75 ~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~---kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~E  150 (182)
                      ...+.+.+..+.++.....+....+.. +.+|.+...   +-+.|..++..+.+...+|+.++-       ++++.|+.+
T Consensus       121 EerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~-------elt~~lq~E  193 (617)
T PF15070_consen  121 EERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENM-------ELTSALQSE  193 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-------HhhHHHHHH
Confidence            334444444444444444443333332 334443332   346777888888888888877654       355666666


Q ss_pred             hHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         151 EDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       151 e~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      .--..-|++.-..++..++.+.+.++
T Consensus       194 q~~~keL~~kl~~l~~~l~~~~e~le  219 (617)
T PF15070_consen  194 QHVKKELQKKLGELQEKLHNLKEKLE  219 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655566666666655543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.40  E-value=2.2  Score=34.38  Aligned_cols=119  Identities=23%  Similarity=0.285  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD  104 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E  104 (182)
                      .-......+..+..+.+.++..-..+.++..+++.+..+...+...+......+......+..|.....+|+..|.+   
T Consensus        65 ~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e---  141 (194)
T PF08614_consen   65 SSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE---  141 (194)
T ss_dssp             -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            33455667777888888888888889999999999999999999999999999999998888888888888888854   


Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA  149 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~  149 (182)
                         ...-+-.+.+++..+.=.++-+......++..+..+.+.+..
T Consensus       142 ---k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  142 ---KNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               233345677777777777777777777777777777777654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0977|consensus

Probab=92.18  E-value=10  Score=35.62  Aligned_cols=99  Identities=23%  Similarity=0.299  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhh
Q psy4658          33 EEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQI  112 (182)
Q Consensus        33 eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~ki  112 (182)
                      +.+|..|.+.|+-=..+..-||.++..|..+.+.|..-...+..++....+.  -+.....-++..   ..++..++..|
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~--El~~ar~~l~e~---~~~ra~~e~ei  115 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEA--ELATARKLLDET---ARERAKLEIEI  115 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhh--hHHHHHHHHHHH---HHHHHHHHHHH
Confidence            4579999999999999999999999999999999998888887776666442  111111111111   23344444555


Q ss_pred             hhhHHHHHhhHHHHHHHHHHHHHH
Q psy4658         113 RNLNDEIAHQDELINKLNKEKKQA  136 (182)
Q Consensus       113 k~l~~el~~~~e~i~KL~kEKk~l  136 (182)
                      +.|.+++..+.-...+..+.....
T Consensus       116 ~kl~~e~~elr~~~~~~~k~~~~~  139 (546)
T KOG0977|consen  116 TKLREELKELRKKLEKAEKERRGA  139 (546)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhh
Confidence            555555555444444444333333

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=92.08  E-value=5.4  Score=32.16  Aligned_cols=131  Identities=22%  Similarity=0.274  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4658          36 VAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLE------------------GEKSGLSSIQERAAKLAAQKADLET   97 (182)
Q Consensus        36 l~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq------------------~E~~~l~e~Ee~~~~L~~~K~eLE~   97 (182)
                      |+.|.++..+-+-.|..-+..+..|..+-.....-++                  .-...++.++.||..|.++=..+-.
T Consensus         6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRk   85 (178)
T PF14073_consen    6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRK   85 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666666666665555444333333                  3344556667777777776666666


Q ss_pred             HHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658          98 QLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus        98 ~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      .|.. +.++.+.-.+-              ..+.+++-.-...++--.+.|..-|..+..|+-...--+..|.+||+.|-
T Consensus        86 mv~~ae~er~~~le~q--------------~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~  151 (178)
T PF14073_consen   86 MVESAEKERNAVLEQQ--------------VSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQ  151 (178)
T ss_pred             HHHHHHHhhhHHHHHH--------------HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543 33322211111              11111111111112222344444555566666666666777777777776


Q ss_pred             HHhh
Q psy4658         177 REKK  180 (182)
Q Consensus       177 ~Ekk  180 (182)
                      .|..
T Consensus       152 eEeh  155 (178)
T PF14073_consen  152 EEEH  155 (178)
T ss_pred             HHHH
Confidence            6654

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.03  E-value=12  Score=36.16  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH---------------HHHHHHHHHH
Q psy4658          31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA---------------AKLAAQKADL   95 (182)
Q Consensus        31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~---------------~~L~~~K~eL   95 (182)
                      .++..+..|.-.-.+......-||.++.....-+..+..||..|+-.-..+++..               +.+..++.+|
T Consensus       471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~l  550 (697)
T PF09726_consen  471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQL  550 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHH
Confidence            3344444444445555556677888888888999999999999876555444333               3467788899


Q ss_pred             HHHHhh-hhhhhhhHHhhhhhHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh----HhhhhHHHHHHH
Q psy4658          96 ETQLAA-DQDKATKDHQIRNLNDEIAHQDE-------LINKLNKEKKQAGEVTQKTAEELQAAE----DKVNHLNKVKAK  163 (182)
Q Consensus        96 E~~l~e-e~EK~~~e~kik~l~~el~~~~e-------~i~KL~kEKk~lee~~~~~~~~l~~Ee----~k~~~l~K~k~K  163 (182)
                      |..+.- ..|-...|..+..++.++..+..       .+.-|.-....+++.+..+-..|.+|-    |-.+.|..++..
T Consensus       551 E~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq  630 (697)
T PF09726_consen  551 ESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQ  630 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            988876 56667777777777777743322       355566677788999999999988774    556778888877


Q ss_pred             HHh
Q psy4658         164 LEQ  166 (182)
Q Consensus       164 le~  166 (182)
                      ++.
T Consensus       631 ~ei  633 (697)
T PF09726_consen  631 LEI  633 (697)
T ss_pred             HHH
Confidence            765

; GO: 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.95  E-value=11  Score=35.38  Aligned_cols=68  Identities=21%  Similarity=0.107  Sum_probs=51.5

Q ss_pred             hcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy4658          12 KGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLS   79 (182)
Q Consensus        12 kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~   79 (182)
                      ...|+|.......++..+....+.+..+-+.++++...++..+.....+..-...+..+...-...+.
T Consensus       267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~  334 (569)
T PRK04778        267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID  334 (569)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777777778888899999999999999999988888888887777777777765554433333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.85  E-value=8.2  Score=33.74  Aligned_cols=100  Identities=19%  Similarity=0.282  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHH-hhH
Q psy4658          47 EKARKEVEALNAKLLEEKTTLLKNLEGEKSGLS-SIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIA-HQD  123 (182)
Q Consensus        47 e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~-e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~-~~~  123 (182)
                      +.....|..++.+|-.+|.+|..+|.++++-+. -.--.|..|...+..+...+.- ..+|+..++.+..=++-|. -+.
T Consensus       105 E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~  184 (310)
T PF09755_consen  105 EFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLW  184 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            445566777888888888888888877765532 2333444443333222222211 4567777777766555543 366


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy4658         124 ELINKLNKEKKQAGEVTQKTAEE  146 (182)
Q Consensus       124 e~i~KL~kEKk~lee~~~~~~~~  146 (182)
                      -.+.+|..+|+.|+..+.+..++
T Consensus       185 Kqm~~l~~eKr~Lq~~l~~~~s~  207 (310)
T PF09755_consen  185 KQMDKLEAEKRRLQEKLEQPVSA  207 (310)
T ss_pred             HHHHHHHHHHHHHHHHHccccCC
Confidence            78888888888888877654333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=91.69  E-value=12  Score=35.48  Aligned_cols=135  Identities=21%  Similarity=0.201  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhHHHHHHHHHHHHH
Q psy4658          24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE----------KSGLSSIQERAAKLAAQKA   93 (182)
Q Consensus        24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E----------~~~l~e~Ee~~~~L~~~K~   93 (182)
                      ..+.++..+..++..+...........+.+...+.++..+..........-          .+.+.+++.-...|.....
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~  404 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE  404 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            467778888888888888887777777777777766666665554443322          2334444444443333333


Q ss_pred             HHHHHHhh-----hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH
Q psy4658          94 DLETQLAA-----DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLN  158 (182)
Q Consensus        94 eLE~~l~e-----e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~  158 (182)
                      .-...+..     +.=+..+...++.|............+...+.+.+......+...++.-++..+.|.
T Consensus       405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~  474 (594)
T PF05667_consen  405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLV  474 (594)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222222     222445555566666555555555555556666666666666666666555544443

>KOG0964|consensus

Probab=91.27  E-value=18  Score=36.47  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             HHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHH
Q psy4658         143 TAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLERE  178 (182)
Q Consensus       143 ~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~E  178 (182)
                      +..++...-++-++|-.--.+|.+.|+-+++.|.+-
T Consensus       458 ~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~  493 (1200)
T KOG0964|consen  458 LKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA  493 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555566666677777666553

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.20  E-value=8.6  Score=32.72  Aligned_cols=44  Identities=34%  Similarity=0.340  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4658          31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGE   74 (182)
Q Consensus        31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E   74 (182)
                      .++.++..++..+......+-+++.++..|..+...+....+.+
T Consensus       100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeE  143 (312)
T PF00038_consen  100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEE  143 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhh
Confidence            45555666666666666666666666666666666555444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0977|consensus

Probab=91.15  E-value=13  Score=34.88  Aligned_cols=43  Identities=19%  Similarity=0.414  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658         138 EVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK  180 (182)
Q Consensus       138 e~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk  180 (182)
                      |.+..+...+-.--.+.+.|.....-|+.+|.||+..|..+.+
T Consensus       296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r  338 (546)
T KOG0977|consen  296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR  338 (546)
T ss_pred             HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence            3444444455555566677777777888888888888877664

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.05  E-value=3.5  Score=30.52  Aligned_cols=69  Identities=22%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK  180 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk  180 (182)
                      +.+..+++.+|+..|.....++.-|-+++..|...++.+...       ..+.++-..-|+..|+|+--.++.++-
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q-------~~s~~qr~~eLqaki~ea~~~le~eK~   79 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ-------NASRNQRIAELQAKIDEARRNLEDEKQ   79 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555667888888888888888888888877766666655       345555666667777777776666553

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0971|consensus

Probab=90.77  E-value=19  Score=36.01  Aligned_cols=47  Identities=11%  Similarity=0.145  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658          51 KEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA  101 (182)
Q Consensus        51 kelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e  101 (182)
                      ..|-++...+.....+|++|+.+    ..-+|++...|...+..||.+|..
T Consensus       420 E~Lsr~~d~aEs~iadlkEQVDA----AlGAE~MV~qLtdknlnlEekVkl  466 (1243)
T KOG0971|consen  420 ERLSRELDQAESTIADLKEQVDA----ALGAEEMVEQLTDKNLNLEEKVKL  466 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----hhcHHHHHHHHHhhccCHHHHHHH
Confidence            33444444455555555555533    445677777877777777776654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.23  E-value=11  Score=32.15  Aligned_cols=130  Identities=21%  Similarity=0.267  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhh
Q psy4658          34 EKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQI  112 (182)
Q Consensus        34 eel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~ki  112 (182)
                      .++..|.+.|+--..+...||..+..|..+.+.+..............      ....-.+|-..|.+ -.++...+..+
T Consensus         4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~------ye~el~~lr~~id~~~~eka~l~~e~   77 (312)
T PF00038_consen    4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEM------YEEELRELRRQIDDLSKEKARLELEI   77 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH------HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccc------hhhHHHHhHHhhhhHHHHhhHHhhhh
Confidence            567788888888888888888888877777777655543322222111      11222223333333 45577777777


Q ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         113 RNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       113 k~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      .++..++..+...+.........++..+..+..++.       ..+-.+..|+..|..|.+.|.
T Consensus        78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld-------~~~~~r~~le~~i~~L~eEl~  134 (312)
T PF00038_consen   78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD-------EETLARVDLENQIQSLKEELE  134 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hhhhhHhHHHHHHHHHHHHHH
Confidence            888888888777777777777777777777776654       333444555555555555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.00  E-value=10  Score=31.69  Aligned_cols=93  Identities=26%  Similarity=0.399  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhh
Q psy4658          26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQD  104 (182)
Q Consensus        26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~E  104 (182)
                      -.+|..+..+|..--+.+..++....++...+..|..|+..+.+.|+........              ||..|+. ..+
T Consensus        10 ~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~--------------lE~iIkqa~~e   75 (230)
T PF10146_consen   10 TLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINT--------------LENIIKQAESE   75 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence            3456666666666667777777888888888888888888887777665554444              4455543 344


Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHH
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKE  132 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kE  132 (182)
                      +......+..+.+++.-+.+.|..+.++
T Consensus        76 r~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   76 RNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666778888888888888766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.89  E-value=9.6  Score=31.12  Aligned_cols=74  Identities=22%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658          26 ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL   99 (182)
Q Consensus        26 eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l   99 (182)
                      ++|+..+..-+..+.+....--+..+.++.....|..+...|+...-.-.........+...|...+..|-.+|
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            56666666666666666666667777777777777777777776655544444444555555555555555555

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=89.83  E-value=11  Score=31.77  Aligned_cols=120  Identities=16%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD  104 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E  104 (182)
                      .+.++..+......-.+.|.+.......+-..++.+..+..+|..|...-...+.++.++..+...   .| .-++++.+
T Consensus        15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~---kl-~~v~~~~e   90 (239)
T COG1579          15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE---KL-SAVKDERE   90 (239)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-hccccHHH
Confidence            555555555555556666666666666666666666666666666655555544444443332211   11 22222333


Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQ  148 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~  148 (182)
                      -.++.+-+-.+.+.+..+.+.+..+..+...++..+..+...+.
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~  134 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE  134 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=89.70  E-value=30  Score=36.51  Aligned_cols=40  Identities=20%  Similarity=0.202  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658          34 EKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG   73 (182)
Q Consensus        34 eel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~   73 (182)
                      .+...+...|...+....++...+..+......|..+.+.
T Consensus       293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEk  332 (1486)
T PRK04863        293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQA  332 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=89.23  E-value=12  Score=31.40  Aligned_cols=112  Identities=21%  Similarity=0.318  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-h
Q psy4658          24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-D  102 (182)
Q Consensus        24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e  102 (182)
                      +.+..|..++++...+...|...+..-..|+++...+..+...|...              +..+...+..|...... .
T Consensus         9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k--------------~~eaee~~~rL~~~~~~~~   74 (246)
T PF00769_consen    9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK--------------RQEAEEEKQRLEEEAEMQE   74 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence            35566777777777777777777777777777777666666555322              22222222333322222 4


Q ss_pred             hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658         103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQA  149 (182)
Q Consensus       103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~  149 (182)
                      .++..++.++..++..+..+.+....-..+...|+..+.....++..
T Consensus        75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~  121 (246)
T PF00769_consen   75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE  121 (246)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667777778888888888888888888888888766666665443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0612|consensus

Probab=88.23  E-value=34  Score=35.25  Aligned_cols=56  Identities=18%  Similarity=0.376  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         121 HQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       121 ~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      ...+.+.-+...+..+.....++..-+..+-....++.-...-+...+..|+..++
T Consensus       585 ~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~  640 (1317)
T KOG0612|consen  585 DLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLK  640 (1317)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45555555655556666666666666666666666666666666666666666544

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.18  E-value=17  Score=31.80  Aligned_cols=116  Identities=28%  Similarity=0.363  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHhhhhhh--hhhHHhhhhhHHHHHhhHHHHHHHHH
Q psy4658          55 ALNAKLLEEKTTLLKNLEGEKSGLSS-IQERAAKLAAQKADLETQLAADQDK--ATKDHQIRNLNDEIAHQDELINKLNK  131 (182)
Q Consensus        55 ~k~~~L~~EK~~L~~qLq~E~~~l~e-~Ee~~~~L~~~K~eLE~~l~ee~EK--~~~e~kik~l~~el~~~~e~i~KL~k  131 (182)
                      .++..|..+|..|...++.+-+-+.+ ..-+..+|..-|.+|+..+..+.+-  ..+-.+|..|..+..........|.+
T Consensus        84 Kkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~  163 (310)
T PF09755_consen   84 KKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR  163 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45566888888898888776555544 4778899999999999999653332  24455677777777777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         132 EKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       132 EKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      +|-.++-.+..      ..|--+|.|.|.-.+|+..---|+..|+
T Consensus       164 EKVdlEn~LE~------EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~  202 (310)
T PF09755_consen  164 EKVDLENTLEQ------EQEALVNRLWKQMDKLEAEKRRLQEKLE  202 (310)
T ss_pred             HHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88887754443      3445567777777777666555555554

>KOG0978|consensus

Probab=88.05  E-value=27  Score=33.90  Aligned_cols=71  Identities=20%  Similarity=0.193  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhh-hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhH
Q psy4658          87 KLAAQKADLETQLAADQDKA-TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHL  157 (182)
Q Consensus        87 ~L~~~K~eLE~~l~ee~EK~-~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l  157 (182)
                      .|...+..|+.++..-+..+ .....|..+++++..+..+.+++.++...+...........+.-......|
T Consensus       500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L  571 (698)
T KOG0978|consen  500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL  571 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444554443322222 334457888888888888888888888777665444444433333333333

>KOG1029|consensus

Probab=87.90  E-value=30  Score=34.24  Aligned_cols=118  Identities=21%  Similarity=0.293  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhh-------hhhhHHHHHHHHHHHHHHHHHHHhh-----hhhhh---
Q psy4658          45 REEKARKEVEALNAKLLEEKTTLLKNLEG---EKS-------GLSSIQERAAKLAAQKADLETQLAA-----DQDKA---  106 (182)
Q Consensus        45 k~e~~rkelE~k~~~L~~EK~~L~~qLq~---E~~-------~l~e~Ee~~~~L~~~K~eLE~~l~e-----e~EK~---  106 (182)
                      +.++.|+++| ++.++.-|++..++.+.+   +++       .....+-....|.-...+|+.+|.|     ..-|.   
T Consensus       397 ~rEaar~ElE-kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie  475 (1118)
T KOG1029|consen  397 RREAAREELE-KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIE  475 (1118)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHH
Confidence            3344455544 345577777766554432   222       2223344555666666677777766     01111   


Q ss_pred             ----hhHH---hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q psy4658         107 ----TKDH---QIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAK  163 (182)
Q Consensus       107 ----~~e~---kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~K  163 (182)
                          ..|-   -+..|...|..+...+.+|.-|+..|...+.+.....-....+.+.|.+...+
T Consensus       476 ~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~  539 (1118)
T KOG1029|consen  476 EVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRK  539 (1118)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHH
Confidence                1111   13344455555556666666666666665555544444444445555554433

>PRK09343 prefoldin subunit beta; Provisional

Probab=87.89  E-value=9.5  Score=28.54  Aligned_cols=35  Identities=17%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658          67 LLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA  101 (182)
Q Consensus        67 L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e  101 (182)
                      |..+++.....+......+..+..++..|+..+.+
T Consensus         5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e   39 (121)
T PRK09343          5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELRE   39 (121)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555566666666666655554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=87.57  E-value=27  Score=33.40  Aligned_cols=104  Identities=18%  Similarity=0.227  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHH
Q psy4658          51 KEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKL  129 (182)
Q Consensus        51 kelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL  129 (182)
                      .+|+..++.|..++..|...|+++.-..-+...++..|...-..+...|.. ..+-.++.++-..+.+.+.+..-.+..+
T Consensus       170 ~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l  249 (617)
T PF15070_consen  170 AELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQL  249 (617)
T ss_pred             HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555544444444433333333332 1222333333333333344433344445


Q ss_pred             HHHHHHHHHH---HHHHHHHHHHhhHhh
Q psy4658         130 NKEKKQAGEV---TQKTAEELQAAEDKV  154 (182)
Q Consensus       130 ~kEKk~lee~---~~~~~~~l~~Ee~k~  154 (182)
                      ..++-.|.-.   ..++.+.|+.++.+.
T Consensus       250 ~~e~e~L~~q~l~Qtql~d~lq~eE~q~  277 (617)
T PF15070_consen  250 ASEKEELHKQLLQQTQLMDRLQHEESQG  277 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5555554432   245567777666554

>KOG0999|consensus

Probab=87.52  E-value=27  Score=33.24  Aligned_cols=129  Identities=19%  Similarity=0.301  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-------Hhh--
Q psy4658          31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQ-------LAA--  101 (182)
Q Consensus        31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~-------l~e--  101 (182)
                      .++.++++++-.+......+..|+..+..+..-..++..+--.-++.+-+.-.|-.||...=.+||..       |+.  
T Consensus       111 eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR  190 (772)
T KOG0999|consen  111 ELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR  190 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence            44555555555555555555555555555555555555554445555666666666666666666542       222  


Q ss_pred             --hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy4658         102 --DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK  159 (182)
Q Consensus       102 --e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K  159 (182)
                        +.+--.+.+.|+.|++++.-+.-+......=|..-+-...+.+..++.|.+..+.|.|
T Consensus       191 ~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkk  250 (772)
T KOG0999|consen  191 QSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKK  250 (772)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence              4555667778888888887766666666555666666778888889999888887655

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.84  E-value=17  Score=30.38  Aligned_cols=40  Identities=10%  Similarity=0.086  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658          28 RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTL   67 (182)
Q Consensus        28 El~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L   67 (182)
                      ++..+..+|.+++..+..+....+.-+.-+..+..|++.|
T Consensus         5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L   44 (230)
T PF10146_consen    5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEEL   44 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666555555554455555555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0996|consensus

Probab=86.78  E-value=41  Score=34.60  Aligned_cols=20  Identities=15%  Similarity=0.322  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy4658          25 LELRQQKLEEKVAQTEASLA   44 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~   44 (182)
                      ..+++...++.++...+.+.
T Consensus       339 ~~~~~~~~~e~lk~~~ek~~  358 (1293)
T KOG0996|consen  339 MQEELEKIEEGLKDENEKFD  358 (1293)
T ss_pred             HHHHHHHHHhHHHHHHHHhh
Confidence            45555555555555554444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.66  E-value=13  Score=28.72  Aligned_cols=75  Identities=28%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH---HHHHHHHHHHHH
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAK---LAAQKADLETQL   99 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~---L~~~K~eLE~~l   99 (182)
                      +..-....+..++.+...+...+.....|..++..|..+.-.+..+|..-...+.+.+.....   |..+-..||..+
T Consensus        12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel   89 (143)
T PF12718_consen   12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL   89 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence            334556777888888888888888888888888888888888888888888888777765433   444444555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=86.50  E-value=42  Score=34.48  Aligned_cols=99  Identities=17%  Similarity=0.360  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--hhhhhhh
Q psy4658          31 KLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--DQDKATK  108 (182)
Q Consensus        31 ~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--e~EK~~~  108 (182)
                      .+..++..+...+........+++..+.+.....+.+...+..-.-.+..++....+|......+...+..  ...+...
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  683 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI  683 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677778888888888888889988888888888888888777777777788888888888888887765  2334455


Q ss_pred             HHhhhhhHHHHHhhHHHHHHH
Q psy4658         109 DHQIRNLNDEIAHQDELINKL  129 (182)
Q Consensus       109 e~kik~l~~el~~~~e~i~KL  129 (182)
                      ..++..+..++......+..+
T Consensus       684 ~~~l~~l~~~l~~~~~e~~~~  704 (1201)
T PF12128_consen  684 EEQLNELEEELKQLKQELEEL  704 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555444443

>PRK11637 AmiB activator; Provisional

Probab=85.71  E-value=26  Score=31.45  Aligned_cols=78  Identities=21%  Similarity=0.135  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658          24 ILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA  101 (182)
Q Consensus        24 ~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e  101 (182)
                      ....++.....++..+...+.........++.++..+....+.+..++......+...+.....+...-..+...+..
T Consensus        51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~  128 (428)
T PRK11637         51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA  128 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366777888888888888888888888888888888888777777777777777777766666666655555544444

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=85.34  E-value=31  Score=31.95  Aligned_cols=152  Identities=18%  Similarity=0.261  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHH-------HHHHHHH
Q psy4658          30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG---EKSGLSSIQERAAKLAAQK-------ADLETQL   99 (182)
Q Consensus        30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~---E~~~l~e~Ee~~~~L~~~K-------~eLE~~l   99 (182)
                      -++-+-|.+|+..-.+.+....+|+-.+.-|......|+...-.   ..+.+....+....|+..|       ++++..+
T Consensus       313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~l  392 (527)
T PF15066_consen  313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTL  392 (527)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHH
Confidence            46777888899988888999999888888888877777655422   2333333344333333322       2222222


Q ss_pred             hh---------------hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Q psy4658         100 AA---------------DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKL  164 (182)
Q Consensus       100 ~e---------------e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kl  164 (182)
                      ..               ..+|.++.-+++++...+..+++.+.---.+|...--..-+.-..|..-++-+..|+..|..+
T Consensus       393 qnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgel  472 (527)
T PF15066_consen  393 QNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGEL  472 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            22               233333333444444444333333222222222222233333344444555566666677777


Q ss_pred             HhhHHHHHHhHHHHhhh
Q psy4658         165 EQTLDELEDSLEREKKL  181 (182)
Q Consensus       165 e~~l~dlE~~Le~Ekk~  181 (182)
                      +-...--=+.|.+|+..
T Consensus       473 Ekat~SALdlLkrEKe~  489 (527)
T PF15066_consen  473 EKATTSALDLLKREKET  489 (527)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            65554444455555543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.18  E-value=19  Score=29.39  Aligned_cols=139  Identities=20%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHH-------Hhh-hhhhh
Q psy4658          38 QTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI---QERAAKLAAQKADLETQ-------LAA-DQDKA  106 (182)
Q Consensus        38 ~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~---Ee~~~~L~~~K~eLE~~-------l~e-e~EK~  106 (182)
                      +|.+...+......-+++-..+|..+..+|..++.+-+-.+.-+   ++....|...-..||+.       ... +.+.+
T Consensus        19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q   98 (193)
T PF14662_consen   19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ   98 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444455556666666666666666666554333333   22233232222233322       221 55566


Q ss_pred             hhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         107 TKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       107 ~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      ++...|-.|+++-..+......+.+..+.|......+...+-.-+.-+++-...-..-...+++|...++
T Consensus        99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie  168 (193)
T PF14662_consen   99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE  168 (193)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6666666666666665555555555555555544444555544444444444444444444455444333

>PRK09039 hypothetical protein; Validated

Probab=84.07  E-value=29  Score=30.56  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE   62 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~   62 (182)
                      .+.+|..+..++..+-+.+.=.......++..+..+..
T Consensus        51 ~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~   88 (343)
T PRK09039         51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRA   88 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            67777777777777776665555555555444443333

>PRK09039 hypothetical protein; Validated

Probab=83.36  E-value=31  Score=30.37  Aligned_cols=59  Identities=14%  Similarity=0.189  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA   90 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~   90 (182)
                      ...++..++.++..+...+..       |-+.+.--.....+|+..+..-...+..++..+.+|..
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~-------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~  102 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAE-------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA  102 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666555443       32222222233334444444444444444444444444

>KOG4674|consensus

Probab=83.32  E-value=71  Score=34.43  Aligned_cols=170  Identities=16%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             hhHhhhHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Q psy4658           2 VDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLARE------------------EKARKEVEALNAKLLEE   63 (182)
Q Consensus         2 ~~~~~~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~------------------e~~rkelE~k~~~L~~E   63 (182)
                      ++.+.+-.|..+.|++++.    ...-+..+-.+|..++....+.                  ..+...+......+..+
T Consensus         6 ~~~~~~~~~~~~~~~V~~d----~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e   81 (1822)
T KOG4674|consen    6 VESFLDVLSEDISPLVDVD----VFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNE   81 (1822)
T ss_pred             HHHHhhcchhhcccccccH----HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666788888887665    4444444444455444444333                  22333333333444444


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhh-------HHhhhhhHHHHHhhHHHHHHHHHHHHH
Q psy4658          64 KTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATK-------DHQIRNLNDEIAHQDELINKLNKEKKQ  135 (182)
Q Consensus        64 K~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~-------e~kik~l~~el~~~~e~i~KL~kEKk~  135 (182)
                      .+++..+|.+-..........+.++...-..|-....+ ..++...       ...+..+..++..+.+.+..+..-+..
T Consensus        82 ~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e  161 (1822)
T KOG4674|consen   82 LSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSE  161 (1822)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444433333333333333333222222221111 1111111       112333444444444455555544445


Q ss_pred             HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhH
Q psy4658         136 AGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSL  175 (182)
Q Consensus       136 lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~L  175 (182)
                      ++.+.+++......-.-+...+.--+.=+++....|...|
T Consensus       162 ~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL  201 (1822)
T KOG4674|consen  162 LEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSREL  201 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5555555544444444444444444444444444444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.24  E-value=30  Score=30.11  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy4658          79 SSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVN  155 (182)
Q Consensus        79 ~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~  155 (182)
                      .+.......|......+...+.. +.+....+..+..++.+...++.....+.++...+.-...+..+..+.-.....
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~  123 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE  123 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555544 445555555566666666666665556665555555444444444444333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.05  E-value=67  Score=33.99  Aligned_cols=33  Identities=12%  Similarity=0.182  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658          35 KVAQTEASLAREEKARKEVEALNAKLLEEKTTL   67 (182)
Q Consensus        35 el~~lke~l~k~e~~rkelE~k~~~L~~EK~~L   67 (182)
                      .|.....++.+......+++.+...|..+....
T Consensus       301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA  333 (1486)
T PRK04863        301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAA  333 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344444444333333333

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=82.46  E-value=13  Score=25.44  Aligned_cols=69  Identities=23%  Similarity=0.372  Sum_probs=46.5

Q ss_pred             hHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         108 KDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       108 ~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      ++..++.-.+.|+++-+-..+|++---.+...+..+......-+..+..+.+....++..++.|+..+.
T Consensus         3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen    3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK   71 (74)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344455555566666666666666555566666677777777777777777777777888888877664

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PHA02562 46 endonuclease subunit; Provisional

Probab=82.06  E-value=41  Score=30.84  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy4658          25 LELRQQKLEEKVAQTEASLA   44 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~   44 (182)
                      .+.++..+..++..+...+.
T Consensus       179 ~~~~i~~l~~~i~~l~~~i~  198 (562)
T PHA02562        179 LNQQIQTLDMKIDHIQQQIK  198 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555444443

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=81.44  E-value=5.8  Score=34.81  Aligned_cols=73  Identities=19%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy4658           7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSI   81 (182)
Q Consensus         7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~   81 (182)
                      +..|..|+|+-....  ..+.++......+...+..+.........|...+.....++..|..+.+.-...+.-+
T Consensus       210 ~~v~~~V~P~~~~l~--~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA  282 (344)
T PF12777_consen  210 YEVNKEVEPKRQKLE--EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA  282 (344)
T ss_dssp             HHHCCCCCHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence            456778889644333  4556666667777777777777777777777777777777776665555444433333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG4643|consensus

Probab=81.37  E-value=66  Score=32.72  Aligned_cols=148  Identities=18%  Similarity=0.195  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh--------
Q psy4658          32 LEEKVAQTEASLAREEKAR--KEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA--------  101 (182)
Q Consensus        32 ~eeel~~lke~l~k~e~~r--kelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e--------  101 (182)
                      +-+++.=+++.|.+-.++-  -.++..+.++.+..+++..+.-..+-..++.-+....|.-.+..|...+.=        
T Consensus       276 LleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~  355 (1195)
T KOG4643|consen  276 LLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENE  355 (1195)
T ss_pred             HHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcch
Confidence            3344444555555544444  455666667777777776666666666666666666666655544433221        


Q ss_pred             ---------h--------hhhhhhHH----------hhhhhHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4658         102 ---------D--------QDKATKDH----------QIRNLND---EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAE  151 (182)
Q Consensus       102 ---------e--------~EK~~~e~----------kik~l~~---el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee  151 (182)
                               +        .-|.-.++          +-..+++   .+..+.-.+-+|.+.-..|++++.++...++.-+
T Consensus       356 E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele  435 (1195)
T KOG4643|consen  356 ELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE  435 (1195)
T ss_pred             hhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence                     0        00111111          1111111   1111222233366666778889999999988888


Q ss_pred             HhhhhHHHHHHHHHhhHHHHHHhHHHHh
Q psy4658         152 DKVNHLNKVKAKLEQTLDELEDSLEREK  179 (182)
Q Consensus       152 ~k~~~l~K~k~Kle~~l~dlE~~Le~Ek  179 (182)
                      +-.+.|..-+.+|...++-....+.+..
T Consensus       436 d~~K~L~~E~ekl~~e~~t~~~s~~rq~  463 (1195)
T KOG4643|consen  436 DLEKKLQFELEKLLEETSTVTRSLSRQS  463 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            8888888888888888888877776664

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.07  E-value=5.1  Score=31.36  Aligned_cols=57  Identities=23%  Similarity=0.089  Sum_probs=34.9

Q ss_pred             hHhhhhcCcchhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658           7 AKESFKGDPNAILTRKQI--LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEE   63 (182)
Q Consensus         7 ~~~~~kvkPlL~~~~~a~--~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~E   63 (182)
                      .|.|.|.+-....-....  ..+++..++.++..+++.+.......+.+...+..|...
T Consensus        50 ~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~  108 (169)
T PF07106_consen   50 EKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE  108 (169)
T ss_pred             eeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455666554432222111  467888999888888887777766666666555555443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=81.02  E-value=49  Score=31.04  Aligned_cols=75  Identities=21%  Similarity=0.200  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA  101 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e  101 (182)
                      .+.++..+...+..+...+...  ..+..+..+..+......|...++.|......++.....+...-..+......
T Consensus       254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~  328 (569)
T PRK04778        254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKE  328 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4556666666666655554443  55666888889999999999999999888888877777776666665555444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=80.78  E-value=37  Score=29.49  Aligned_cols=51  Identities=25%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy4658          49 ARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQL   99 (182)
Q Consensus        49 ~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l   99 (182)
                      -+..|++.+..|..+.+.|...++.-...+....++...|...-..|....
T Consensus       150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~  200 (325)
T PF08317_consen  150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV  200 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556666666665555555555555555555555444444443

>PF15294 Leu_zip: Leucine zipper

Probab=80.63  E-value=37  Score=29.33  Aligned_cols=146  Identities=18%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             cCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--------
Q psy4658          13 GDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER--------   84 (182)
Q Consensus        13 vkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~--------   84 (182)
                      ..|+-.+.-++-...|+..+.+|-.+++       .+..-++........|+..|..+|..-+....+...+        
T Consensus       118 L~pl~e~g~~~ll~kEi~rLq~EN~kLk-------~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q  190 (278)
T PF15294_consen  118 LEPLNESGGSELLNKEIDRLQEENEKLK-------ERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQ  190 (278)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            3454333333334455555555555555       5555566677777777777777777666533332221        


Q ss_pred             -----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy4658          85 -----AAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNK  159 (182)
Q Consensus        85 -----~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K  159 (182)
                           -..+...|.+++..+.      ......++|.+.+...-..+-+++..   +.-....+...++ +-...+++-.
T Consensus       191 ~l~dLE~k~a~lK~e~ek~~~------d~~~~~k~L~e~L~~~KhelL~~Qeq---L~~aekeLekKfq-qT~ay~NMk~  260 (278)
T PF15294_consen  191 DLSDLENKMAALKSELEKALQ------DKESQQKALEETLQSCKHELLRVQEQ---LSLAEKELEKKFQ-QTAAYRNMKE  260 (278)
T ss_pred             chhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcchh---hhcchhhHHHHhC-ccHHHHHhHH
Confidence                 2223333333333332      22223455555555554444333332   3333344444544 3555666666


Q ss_pred             HHHHHHhhHHHHHHhH
Q psy4658         160 VKAKLEQTLDELEDSL  175 (182)
Q Consensus       160 ~k~Kle~~l~dlE~~L  175 (182)
                      +-.+=..+|-+|-..|
T Consensus       261 ~ltkKn~QiKeLRkrl  276 (278)
T PF15294_consen  261 ILTKKNEQIKELRKRL  276 (278)
T ss_pred             HHHhccHHHHHHHHHh
Confidence            6667777778777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-16
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-11
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 91.8 bits (228), Expect = 4e-22
 Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 1    MVDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKL 60
               L   K   +    A        E  + +L  K  + E  L   E   +E E  + +L
Sbjct: 887  HTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL 946

Query: 61   LEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIA 120
              EK    K ++ +   +  ++E+  +  A +  L+       +K T D +I+ + D+I 
Sbjct: 947  QAEK----KKMQQQ---MLDLEEQLEEEEAARQKLQ------LEKVTADGKIKKMEDDIL 993

Query: 121  HQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
              ++  NKL KE+K   E        L   E+K  +L K+K K E  + ELE  L++E+K
Sbjct: 994  IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053

Query: 181  LR 182
             R
Sbjct: 1054 SR 1055

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 15/171 (8%)

Query: 26   ELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERA 85
            E   Q  +E++ +T+    + E   KE+E  + +L EEK  L + L+ E    +  +E  
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 86   AKLAAQKADLETQLAADQDKATKDH---------------QIRNLNDEIAHQDELINKLN 130
             +LAA+K +LE  L   + +  ++                Q+ +L +++  ++    KL 
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 131  KEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
             EK  A    +K  +++   ED+ N L K +  LE+ + +L  +L  E++ 
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 8/164 (4%)

Query: 25   LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
            L   ++ LEE+V+    +LA EE+  K +  L  K     + L   L+ E+     +++ 
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 85   AAKLAAQKADLETQLAADQDK--------ATKDHQIRNLNDEIAHQDELINKLNKEKKQA 136
              KL  + +DL  Q+A  Q +        A K+ +++     +  +    N   K+ ++ 
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

Query: 137  GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKK 180
                    E+L++ +   N   K K  L + L+ L+  LE    
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 6e-11
 Identities = 29/154 (18%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 25   LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQER 84
            L   + K E  +++ E  L +EEK+R+E+E +  KL  E + L + +   ++ ++ ++ +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089

Query: 85   AAKLAAQKADLETQLAADQDKATK--------DHQIRNLNDEIAHQDELINKLNKEKKQA 136
             AK   +      +L  +  +           +  I +L +++  +    NK  K+K+  
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149

Query: 137  GEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDE 170
             E  +    EL+   D      +++    +  D+
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 15/195 (7%)

Query: 3    DLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLE 62
             L A K+  +     +  + +  E  +QKL+ +    +  + + E     +E  N KL +
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004

Query: 63   EKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATK--------DHQIRN 114
            E+  L + +    + L+  +E+A  L   K   E+ ++  + +  K        +   R 
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 115  LNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKV-------NHLNKVKAKLEQT 167
            L  E +   E I +L  +  +      K  EELQAA  ++       N+  K   +LE  
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 168  LDELEDSLEREKKLR 182
            + +L++ LE EK  R
Sbjct: 1125 ISDLQEDLESEKAAR 1139

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 9/183 (4%)

Query: 2    VDLLAAKESFKGDPNAILTRKQILELRQQKLEEKVAQTEA-SLAREEKARKEVEALNAKL 60
            V    A+  +     AI+  +        K E K  + EA S+ R +K    +E    +L
Sbjct: 874  VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933

Query: 61   ---LEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLND 117
               ++E+    K+L  + + L      + +    ++D+E    ++++     +++ +L +
Sbjct: 934  QRKIDEQNKEYKSLLEKMNNL--EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991

Query: 118  EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177
            EIA   + +++   EKK   E   K   E    E  V+ L +    L+   +EL   +  
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 178  EKK 180
            + K
Sbjct: 1049 QAK 1051

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 14/139 (10%), Positives = 35/139 (25%), Gaps = 5/139 (3%)

Query: 28   RQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAK 87
             + K ++K+A       R  K  +      +  L              + + +  +    
Sbjct: 876  IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSN-----ETGDSITAVQAKLKNLEA 930

Query: 88   LAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEEL 147
               +   LE Q  +D           N N      +       ++        +     L
Sbjct: 931  FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 990

Query: 148  QAAEDKVNHLNKVKAKLEQ 166
             A  +++  +  +      
Sbjct: 991  LAELERLQKIEDLHHHHHH 1009

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 9/170 (5%)

Query: 21   RKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSS 80
                 +LR  K E  VA    +    +     +E    +  E     LK  +     L  
Sbjct: 831  NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 890

Query: 81   IQERAAKLAAQKADLETQLAAD---QDKATKDHQIRNLNDEIA----HQDELINKLNKEK 133
                  KL          L ++           +++NL          + +  + L    
Sbjct: 891  YNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 950

Query: 134  KQAGEVTQKTAEELQA--AEDKVNHLNKVKAKLEQTLDELEDSLEREKKL 181
             Q  E+      EL              VK+  E   + L   LER +K+
Sbjct: 951  AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKI 1000

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 7/163 (4%)

Query: 22   KQILELRQQKLEEKVAQTEASLAR-------EEKARKEVEALNAKLLEEKTTLLKNLEGE 74
            +  L  + ++L+ K  Q    L +        E  +K+   L  +L      +       
Sbjct: 1940 QVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999

Query: 75   KSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKK 134
             + L   +         +            +      I  L   IA   E    L +E +
Sbjct: 2000 YADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE 2059

Query: 135  QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER 177
            Q    + K   ++  +   +++LN  + + EQ  +     +  
Sbjct: 2060 QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 38/192 (19%)

Query: 26  ELRQ--QKL---EEKVAQTEASLAR--EEKARKEVEALNAKLLEEKTTLLKNLEGEKSGL 78
           E R+   +L             L+    +  + +V  +    L + + + K  +     +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISI 428

Query: 79  SSIQERAAKLAAQKADLETQLAADQDKATK----DHQIRNLNDE-----IAH------QD 123
            SI          +  L   +  D     K    D  I    D+     I H        
Sbjct: 429 PSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 124 ELINKLNK--------EKK-----QAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDE 170
           E +             E+K      A   +      LQ  +    ++     K E+ ++ 
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 171 LEDSLER-EKKL 181
           + D L + E+ L
Sbjct: 548 ILDFLPKIEENL 559

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	99.86
3bas_A	89	Myosin heavy chain, striated muscle/general contro	99.74
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	98.17
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.17
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.92
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.39
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.37
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.22
3bas_A	89	Myosin heavy chain, striated muscle/general contro	96.0
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.78
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.43
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.23
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.01
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	92.13
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.03
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	88.27
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	87.17
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	87.02
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.64
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	82.74
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.01
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	80.47

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=99.86  E-value=3.6e-20  Score=140.34  Aligned_cols=125  Identities=22%  Similarity=0.349  Sum_probs=117.3

Q ss_pred             hcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q psy4658          12 KGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQ   91 (182)
Q Consensus        12 kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~   91 (182)
                      +|||||++++   ++++|.+++++|.++++.+.+.+..|++|+..++++.+++|+|+.+|+++++++++++++|.+|+++
T Consensus         1 ~vKPLL~~~~---~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~   77 (129)
T 2fxo_A            1 GSSPLLKSAE---REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKN   77 (129)
T ss_dssp             CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5999999999   9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy4658          92 KADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAED  152 (182)
Q Consensus        92 K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~  152 (182)
                      +++|+.+|++             +++.+....+.++.|...++.++..+..+..++.+.+.
T Consensus        78 k~eLe~~l~e-------------l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           78 KIQLEAKVKE-------------MNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999954             88888889999999999999998888888888776653

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=99.74  E-value=2.2e-17  Score=117.59  Aligned_cols=81  Identities=23%  Similarity=0.373  Sum_probs=70.7

Q ss_pred             hhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy4658          11 FKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAA   90 (182)
Q Consensus        11 ~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~   90 (182)
                      +||||||++++   ++++|.++++++..+++.+.+++..|++|+.++++|.+++|+|+.|       +++++++|.+|++
T Consensus         1 ~kVKPLL~~~~---~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~   70 (89)
T 3bas_A            1 GSHMPLLSIAR---QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLS   70 (89)
T ss_dssp             ---------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             CCCCcccccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHH
Confidence            58999999999   9999999999999999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHHHHHhh
Q psy4658          91 QKADLETQLAA  101 (182)
Q Consensus        91 ~K~eLE~~l~e  101 (182)
                      +|++|+.+|++
T Consensus        71 ~K~eLE~~l~e   81 (89)
T 3bas_A           71 KNYHLENEVAR   81 (89)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999976

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.04  E-value=6.7e-10  Score=109.04  Aligned_cols=170  Identities=31%  Similarity=0.389  Sum_probs=84.7

Q ss_pred             hHhhhhcCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy4658           7 AKESFKGDPNAILTRKQILELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAA   86 (182)
Q Consensus         7 ~~~~~kvkPlL~~~~~a~~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~   86 (182)
                      .++|++++|++...+   ...+|..+..++..++..+.+.+..+.+++..+..+..+++.+..+++.+...+.+++..+.
T Consensus       840 ~rl~~klkpLl~~a~---~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~  916 (1184)
T 1i84_S          840 MXLFFXIXPLLKVTR---QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV  916 (1184)
T ss_dssp             HHHHHHHTTTCCCCT---HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999987776   88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh-------------------------------------------hhhhhhhHHhhhhhHHHHHhhH
Q psy4658          87 KLAAQKADLETQLAA-------------------------------------------DQDKATKDHQIRNLNDEIAHQD  123 (182)
Q Consensus        87 ~L~~~K~eLE~~l~e-------------------------------------------e~EK~~~e~kik~l~~el~~~~  123 (182)
                      .+......++..+.+                                           ..+....+.++..++.++..+.
T Consensus       917 ~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~le  996 (1184)
T 1i84_S          917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME  996 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888777765                                           2334455556666777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHh
Q psy4658         124 ELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREK  179 (182)
Q Consensus       124 e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ek  179 (182)
                      +.+..+..+++.++..+..+...+...+++...+.+.+.+++..+++++..+...+
T Consensus       997 e~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e 1052 (1184)
T 1i84_S          997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052 (1184)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888888888888888888888888888888888888887776554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=98.17  E-value=0.00029  Score=52.58  Aligned_cols=115  Identities=26%  Similarity=0.304  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHH
Q psy4658          54 EALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEK  133 (182)
Q Consensus        54 E~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEK  133 (182)
                      +..+..+..+...|...+........+.+.....|...+++|-.+|.             .-.+-+...++.+.+|.+.+
T Consensus        12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~-------------~E~~~l~e~EE~~~~L~~~k   78 (129)
T 2fxo_A           12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ-------------AEQDNLADAEERCDQLIKNK   78 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhHHHHHHHHHHHH
Confidence            34555666677777777777777777778888888888888888774             34456778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhh
Q psy4658         134 KQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL  181 (182)
Q Consensus       134 k~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~  181 (182)
                      ..|+..+..+.+++..+++..+.|...+.+++..+++|...++....+
T Consensus        79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~  126 (129)
T 2fxo_A           79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT  126 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999876543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.17  E-value=2.7e-05  Score=76.02  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=65.6

Q ss_pred             hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658         102 DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS  174 (182)
Q Consensus       102 e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~  174 (182)
                      +.+++.++++++.|++++..+.+.+.++.++++.+++.++++.++|+   +++++|.+.+.+|++++++|+..
T Consensus       976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A          976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999999999999999999999999887   99999999999999999999953

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.92  E-value=0.097  Score=40.81  Aligned_cols=45  Identities=11%  Similarity=0.034  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4658          29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEG   73 (182)
Q Consensus        29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~   73 (182)
                      +..+..++..+...+.........+...+..+......+...+..
T Consensus        22 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (284)
T 1c1g_A           22 ADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD   66 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.39  E-value=0.13  Score=50.36  Aligned_cols=147  Identities=16%  Similarity=0.234  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-
Q psy4658          30 QKLEEKVAQTEASLAREEKARKEVEALNA----KLLEEKTTLLKN---LEGEKSGLSSIQERAAKLAAQKADLETQLAA-  101 (182)
Q Consensus        30 ~~~eeel~~lke~l~k~e~~rkelE~k~~----~L~~EK~~L~~q---Lq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-  101 (182)
                      ..++..+..+...+...+.....+.+...    .+..+...|...   |+........++.+...|...-.+|+..+.. 
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554444444444332    233344444222   2222223333344444455555555555543 


Q ss_pred             hhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHHHhhh
Q psy4658         102 DQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKL  181 (182)
Q Consensus       102 e~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~Ekk~  181 (182)
                      .+++...+..+..+.+   .+.+.++.|.+++..|+....++...++..++...  ...+..++..-..++..++.|+..
T Consensus      1004 ~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A         1004 QTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566666777666665   44488888988988888888888866666554333  356666667777777777777653

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.37  E-value=0.0028  Score=62.35  Aligned_cols=70  Identities=21%  Similarity=0.359  Sum_probs=0.0

Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS  174 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~  174 (182)
                      ....+..+..+...+....+.+..+.+++..++..+..+...+...+.....+.+....++..+.++...
T Consensus      1006 ~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~e 1075 (1184)
T 1i84_S         1006 RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075 (1184)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555666666666666666666666655555555555555555555544444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.22  E-value=0.28  Score=37.57  Aligned_cols=92  Identities=25%  Similarity=0.374  Sum_probs=59.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy4658          76 SGLSSIQERAAKLAAQKADLETQLAADQDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVN  155 (182)
Q Consensus        76 ~~l~e~Ee~~~~L~~~K~eLE~~l~ee~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~  155 (182)
                      ..+.-++++......+..+|+..+.      .+.+.+++       ++-+-.+.+.--..+++.+..++..|..-+.++.
T Consensus        28 ~dLEraEERae~aE~k~~eLEeeL~------~v~~nlKs-------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE   94 (155)
T 2efr_A           28 KLLERAEERAELSEGKSAELEEELK------TVTNNLKS-------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE   94 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcc-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666652      22333333       3333444444445566677777788888888888


Q ss_pred             hHHHHHHHHHhhHHHHHHhHHHHhh
Q psy4658         156 HLNKVKAKLEQTLDELEDSLEREKK  180 (182)
Q Consensus       156 ~l~K~k~Kle~~l~dlE~~Le~Ekk  180 (182)
                      ...+.-.+|+..|++||+.|..++.
T Consensus        95 ~AERsv~kLEk~id~lEd~L~~~Ke  119 (155)
T 2efr_A           95 FAERSVTKLEKSIDDLEDELYAQKL  119 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888877653

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=96.00  E-value=0.08  Score=36.78  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=28.3

Q ss_pred             HHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         147 LQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       147 l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      +++-++.+..|.+.+.-|+..|.+++++|+
T Consensus        58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           58 MKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888999999999999999999999999875

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.78  E-value=0.62  Score=37.87  Aligned_cols=143  Identities=13%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD  104 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E  104 (182)
                      .+.++..+...+..+...+...+.....+...+..+..+..++..++..-...+.+...+..+...   .|. .++..++
T Consensus        16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~---~l~-~v~~~kE   91 (256)
T 3na7_A           16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK---KMS-EIKSERE   91 (256)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HCSSSSH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-ccCCHHH
Confidence            555555555555555555555555555555555555555555554444444333333333332222   121 1222344


Q ss_pred             hhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHh
Q psy4658         105 KATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDS  174 (182)
Q Consensus       105 K~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~  174 (182)
                      -.+..+.|..+...+..+++.|..+......++..+..+...+..-.   ..+...+..+...+.+++..
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~---~~l~~~~~~~~~~~~e~~~e  158 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE---KLALELESLVENEVKNIKET  158 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            44444444454444444444444444444444444333333333222   23333444444444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.43  E-value=0.67  Score=35.89  Aligned_cols=141  Identities=23%  Similarity=0.297  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hh
Q psy4658          29 QQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-----DQ  103 (182)
Q Consensus        29 l~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-----e~  103 (182)
                      +..++..+..+.+.|..+.       +..+.+-.--+.+...+++--..+.+..++|..|...+..|+..+..     ..
T Consensus         8 i~~LekQL~E~n~kLk~Es-------E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q   80 (168)
T 3o0z_A            8 LSQLQKQLEEANDLLRTES-------DTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA   80 (168)
T ss_dssp             --CTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555444332       22233333444555555555666677777888888888877777765     22


Q ss_pred             hhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHH----hhHHHHHHhHHHHh
Q psy4658         104 DKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLE----QTLDELEDSLEREK  179 (182)
Q Consensus       104 EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle----~~l~dlE~~Le~Ek  179 (182)
                      |+.+.    .-.++-+..+...|.-|.-+.+.+-.+...+..+-..-.++++.|.|-++.++    =.+--+..+|++|.
T Consensus        81 Er~~r----~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~  156 (168)
T 3o0z_A           81 ERRDR----GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEV  156 (168)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            22111    11223334444455555555555555555555555556667777788777777    33667777777765


Q ss_pred             h
Q psy4658         180 K  180 (182)
Q Consensus       180 k  180 (182)
                      +
T Consensus       157 ~  157 (168)
T 3o0z_A          157 N  157 (168)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.23  E-value=0.99  Score=36.66  Aligned_cols=42  Identities=7%  Similarity=-0.049  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658          27 LRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLL   68 (182)
Q Consensus        27 eEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~   68 (182)
                      .++..++.++..++..+........+++.....+..+...+.
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~   73 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN   73 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444433333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.01  E-value=0.6  Score=32.99  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKS-GLSSIQERAAKLAAQKADLETQLA  100 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~-~l~e~Ee~~~~L~~~K~eLE~~l~  100 (182)
                      .+.++...+.++..+...+..+...|...|....++..|.-+|...|-.+.. .++++--.+..+..+-..|..+|+
T Consensus        17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6677888899999999999999999999999999999999999999876643 344444444445555555555554

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.13  E-value=3.1  Score=31.70  Aligned_cols=79  Identities=20%  Similarity=0.274  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------hhhhhhhHHhhhhhHHHHHhhHHHHHH
Q psy4658          58 AKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---------DQDKATKDHQIRNLNDEIAHQDELINK  128 (182)
Q Consensus        58 ~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---------e~EK~~~e~kik~l~~el~~~~e~i~K  128 (182)
                      .....+.+.|...|..+......+|..+..+..-=-+|...+=+         ..+.+.++.++..|...+...+..+..
T Consensus        54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~  133 (154)
T 2ocy_A           54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDT  133 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555444444443333333322         345666666666776666666666666


Q ss_pred             HHHHHHHH
Q psy4658         129 LNKEKKQA  136 (182)
Q Consensus       129 L~kEKk~l  136 (182)
                      ++.+...|
T Consensus       134 lq~ql~~L  141 (154)
T 2ocy_A          134 LTLQLKNL  141 (154)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=91.03  E-value=21  Score=39.05  Aligned_cols=71  Identities=18%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             hhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHH
Q psy4658         106 ATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLE  176 (182)
Q Consensus       106 ~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le  176 (182)
                      ......+..+++.+..+.+..+....++..++.....+...|...+.-++.|+-=+.+...++..+...+.
T Consensus      2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A         2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence            34556677777777778888888888888888888888888888888888888888888888888876543

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=88.27  E-value=7  Score=29.71  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHhhhhhHH
Q psy4658          39 TEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA-DQDKATKDHQIRNLND  117 (182)
Q Consensus        39 lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e-e~EK~~~e~kik~l~~  117 (182)
                      +...|.+.+.+....+.++..|..+...+...|.+-......+..+-......-..|..++++ +.--...+..|..|+.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444333332222222222222222222333333332 1112245566777777


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH
Q psy4658         118 EIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLN  158 (182)
Q Consensus       118 el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~  158 (182)
                      .|..+++.+..-....+.+.+.+.++..+|..-..+.-||+
T Consensus       106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~  146 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE  146 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            77777777666655666666677777777665444444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.17  E-value=6.1  Score=27.79  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh---------hhhhhhhHHhhhhhHHHHH
Q psy4658          53 VEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAA---------DQDKATKDHQIRNLNDEIA  120 (182)
Q Consensus        53 lE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~e---------e~EK~~~e~kik~l~~el~  120 (182)
                      ++..+.....+.+.|...|..+......+|..+..+..---+|...|=+         ..+.+.++.+...|..+|.
T Consensus        17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444667777788888888888888887776666555555544422         3344455555555554443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=87.02  E-value=8  Score=29.01  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4658          25 LELRQQKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLETQLAADQD  104 (182)
Q Consensus        25 ~eeEl~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~~l~ee~E  104 (182)
                      .++-+......|..+.......+..|+.|+.....-..-...|..||..-.....+++.++.-....-.-++..+..-.+
T Consensus        15 ~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraee   94 (147)
T 2b9c_A           15 AQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE   94 (147)
T ss_dssp             GGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666777777888888888999988888888888899999888888888887777666555555555532111


Q ss_pred             -hhhhHHhhhhhHHHHHhhHHHH
Q psy4658         105 -KATKDHQIRNLNDEIAHQDELI  126 (182)
Q Consensus       105 -K~~~e~kik~l~~el~~~~e~i  126 (182)
                       --..+.+|+.|++++.....++
T Consensus        95 Rae~aE~k~~eLEeeL~~~~~nl  117 (147)
T 2b9c_A           95 RAELSEGKCAELEEELKTVTNNL  117 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence             1234444555544444443333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.64  E-value=13  Score=28.29  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy4658          30 QKLEEKVAQTEASLAREEKARKEVEALNAKLLEEKTTLLKNLEGEK-SGLSSIQERAAKLAAQKADLETQLA  100 (182)
Q Consensus        30 ~~~eeel~~lke~l~k~e~~rkelE~k~~~L~~EK~~L~~qLq~E~-~~l~e~Ee~~~~L~~~K~eLE~~l~  100 (182)
                      ...+.++..+...+..+...|...|....++..|.-+|...|-.+. ..++++--.+..+..+-..|+.++.
T Consensus        54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~  125 (154)
T 2ocy_A           54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR  125 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666666666666666666666666666666654442 2333333334444444445555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=82.74  E-value=14  Score=28.35  Aligned_cols=44  Identities=20%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy4658          54 EALNAKLLEEKTTLLKNLEGEKSGLSSIQERAAKLAAQKADLET   97 (182)
Q Consensus        54 E~k~~~L~~EK~~L~~qLq~E~~~l~e~Ee~~~~L~~~K~eLE~   97 (182)
                      +.....|..+...|+.+|.+|+....-..+...-|..+-.-|..
T Consensus        61 ~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~  104 (168)
T 3o0z_A           61 ENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQE  104 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566666666666666666555554444443333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.01  E-value=58  Score=35.70  Aligned_cols=43  Identities=9%  Similarity=0.237  Sum_probs=26.5

Q ss_pred             hhhhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4658         103 QDKATKDHQIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAE  145 (182)
Q Consensus       103 ~EK~~~e~kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~  145 (182)
                      .+|...+..+...+..+.....-|+.|.-|+..+.+....+..
T Consensus      2056 ~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A         2056 RETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence            4455566666666666666666666677777666665555443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=80.47  E-value=11  Score=25.35  Aligned_cols=67  Identities=25%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHhhHHHHHHhHHH
Q psy4658         111 QIRNLNDEIAHQDELINKLNKEKKQAGEVTQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLER  177 (182)
Q Consensus       111 kik~l~~el~~~~e~i~KL~kEKk~lee~~~~~~~~l~~Ee~k~~~l~K~k~Kle~~l~dlE~~Le~  177 (182)
                      .+.+|-.+..++-++-..|+--|+.|=.++.+++..-..-..-...+..++.+++..+.++|+.|.+
T Consensus        10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr   76 (77)
T 2w83_C           10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455556677777888888888888888888998888887888889999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00