Psyllid ID: psy4772
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 235 | 2.2.26 [Sep-21-2011] | |||||||
| P29702 | 375 | Protein farnesyltransfera | yes | N/A | 0.519 | 0.325 | 0.569 | 9e-35 | |
| P49354 | 379 | Protein farnesyltransfera | yes | N/A | 0.519 | 0.321 | 0.569 | 3e-34 | |
| Q61239 | 377 | Protein farnesyltransfera | yes | N/A | 0.519 | 0.323 | 0.552 | 1e-33 | |
| Q04631 | 377 | Protein farnesyltransfera | yes | N/A | 0.519 | 0.323 | 0.552 | 5e-33 | |
| P93227 | 346 | Protein farnesyltransfera | N/A | N/A | 0.638 | 0.433 | 0.372 | 1e-31 | |
| O24304 | 333 | Protein farnesyltransfera | N/A | N/A | 0.604 | 0.426 | 0.387 | 3e-29 | |
| Q9LX33 | 326 | Protein farnesyltransfera | yes | N/A | 0.612 | 0.441 | 0.355 | 4e-24 | |
| Q54RT9 | 322 | Protein farnesyltransfera | yes | N/A | 0.468 | 0.341 | 0.440 | 4e-23 | |
| O60052 | 294 | Protein farnesyltransfera | yes | N/A | 0.485 | 0.387 | 0.408 | 5e-17 | |
| Q9Y765 | 306 | Protein farnesyltransfera | N/A | N/A | 0.480 | 0.369 | 0.388 | 9e-17 |
| >sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K + ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 85 QIIYSEKFQDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 143
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 144 LHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILTQDAKNYHAWQHRQ 203
Query: 218 WVI 220
WVI
Sbjct: 204 WVI 206
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK. Bos taurus (taxid: 9913) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 9 |
| >sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 89 QIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|Q61239|FNTA_MOUSE Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 89 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL+QDAKNYHAWQHRQ
Sbjct: 148 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILSQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|Q04631|FNTA_RAT Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 89 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 105/212 (49%), Gaps = 62/212 (29%)
Query: 14 VYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQR 73
+ +K R +W D++P+PQDDGP PVV
Sbjct: 11 IPFKERPDWADVKPVPQDDGPCPVVP---------------------------------- 36
Query: 74 YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADA 133
I +T F+ +DY R A+ A E+S RAL LT +A
Sbjct: 37 ---IAYTEDFS-----ETMDYFR------------------AIYVADERSTRALQLTGEA 70
Query: 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP- 192
I +NP NYTVWQ+RR +L+AL DL +ELK++ EN+KNYQ+W HR+ + E +G
Sbjct: 71 IQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADA 130
Query: 193 -DEELALTAAILAQDAKNYHAWQHRQWVINLL 223
EL T I +QDAKNYHAW HRQWV+ L
Sbjct: 131 VTNELEFTKKIFSQDAKNYHAWSHRQWVLQAL 162
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 101/204 (49%), Gaps = 62/204 (30%)
Query: 19 REEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVIN 78
R EW D+ PIPQDDGP+PVV I Y S+E S +
Sbjct: 18 RPEWSDVTPIPQDDGPSPVVPINY-------SEEFSEV---------------------- 48
Query: 79 HTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138
+DY R AV A E S RALALTA+AI +N
Sbjct: 49 -------------MDYFR------------------AVYFAKELSSRALALTAEAIGLNA 77
Query: 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP--DEEL 196
NYTVW +RR +L++L DLH E +++ NSKNYQ+W HR+ + E +G + EL
Sbjct: 78 GNYTVWHFRRLLLESLKVDLHVEREFVERVASGNSKNYQIWHHRRWVAEKLGPEARNSEL 137
Query: 197 ALTAAILAQDAKNYHAWQHRQWVI 220
T IL+ DAK+YHAW HRQWV+
Sbjct: 138 EFTKKILSVDAKHYHAWSHRQWVL 161
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|Q9LX33|FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 100/208 (48%), Gaps = 64/208 (30%)
Query: 19 REEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVIN 78
R EW D+ P+ QDDGP PVV IAY
Sbjct: 12 RLEWSDVVPLTQDDGPNPVVPIAYK----------------------------------- 36
Query: 79 HTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138
E + +DY R A+ + E+S RAL LT + + +N
Sbjct: 37 -------EEFRETMDYFR------------------AIYFSDERSPRALRLTEETLLLNS 71
Query: 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD---EE 195
NYTVW +RR +L+ALN DL +EL++I ++NSKNYQ+W HR+ + E +G PD E
Sbjct: 72 GNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLG-PDVAGRE 130
Query: 196 LALTAAILAQDAKNYHAWQHRQWVINLL 223
L T +L+ DAK+YHAW HRQW + L
Sbjct: 131 LEFTRRVLSLDAKHYHAWSHRQWTLRAL 158
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 8/118 (6%)
Query: 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD------LHQELK 163
NY R A++ + EKS R L L + I NP+NYT+W YRRE+LKA+ +D + QE+
Sbjct: 48 NYFR-AILKSKEKSLRVLDLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMN 106
Query: 164 YIGEKIKENSKNYQVWRHRQIIVE-WMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220
+ + + + KNYQ+W HR+ IVE ++G ++E + +L +DAKNYHAW HRQW++
Sbjct: 107 LLNDMGETDPKNYQIWNHRRFIVEKYIGSDNKEKEFLSGVLLEDAKNYHAWSHRQWLL 164
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|O60052|FNTA_SCHPO Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170
Y R A++ E S RAL LT I NPA+YTVW YR +IL + EL+++ E +
Sbjct: 47 YFR-AIMAKKEYSLRALNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAE 105
Query: 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225
+ KNYQVW HRQ I+ + EL T + D+KNYH W +R W++ +D
Sbjct: 106 DFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFND 160
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|Q9Y765|FNTA_CANAX Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Candida albicans GN=RAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL-NKDLHQELKYIGEKIK 170
L A++ A E SERAL +T I ++YT+W YR ILK L N++L+ EL + E
Sbjct: 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL 97
Query: 171 ENSKNYQVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKNYHAWQHRQWVINLL 223
+N KNYQ+W +RQ+I+ + E P E + A+L+ D KN+H W +R+W+++
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFPILEAMLSSDPKNHHVWSYRKWLVDTF 157
Query: 224 D 224
D
Sbjct: 158 D 158
|
Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Candida albicans (taxid: 5476) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 235 | ||||||
| 91077894 | 331 | PREDICTED: similar to predicted protein | 0.731 | 0.519 | 0.440 | 4e-42 | |
| 307198187 | 334 | Protein farnesyltransferase/geranylgeran | 0.565 | 0.398 | 0.607 | 5e-39 | |
| 58801177 | 334 | farnesyltransferase/geranylgeranyltransf | 0.668 | 0.470 | 0.414 | 5e-38 | |
| 195342536 | 331 | GM18072 [Drosophila sechellia] gi|194132 | 0.706 | 0.501 | 0.418 | 7e-38 | |
| 195576598 | 331 | GD22689 [Drosophila simulans] gi|1941901 | 0.706 | 0.501 | 0.418 | 8e-38 | |
| 156537568 | 335 | PREDICTED: protein farnesyltransferase/g | 0.685 | 0.480 | 0.433 | 8e-38 | |
| 158300946 | 339 | AGAP011767-PA [Anopheles gambiae str. PE | 0.540 | 0.374 | 0.618 | 1e-37 | |
| 312381712 | 340 | hypothetical protein AND_05934 [Anophele | 0.540 | 0.373 | 0.625 | 1e-37 | |
| 322802574 | 331 | hypothetical protein SINV_09819 [Solenop | 0.531 | 0.377 | 0.619 | 1e-37 | |
| 195437352 | 342 | GK24478 [Drosophila willistoni] gi|19416 | 0.723 | 0.497 | 0.415 | 2e-37 |
| >gi|91077894|ref|XP_973141.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270001465|gb|EEZ97912.1| hypothetical protein TcasGA2_TC000297 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 133/234 (56%), Gaps = 62/234 (26%)
Query: 1 MTDSSSDEDNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLI 60
M +SSSDE + + YK+R EWKD+ P+PQDDG P+VAI
Sbjct: 1 MGESSSDESDTTFQLYKDRREWKDVTPVPQDDGDQPIVAI-------------------- 40
Query: 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120
++T QF + ++Y R AV+ +G
Sbjct: 41 -----------------DYTEQF----------------------KDVFDYFR-AVLQSG 60
Query: 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS-KNYQVW 179
EKSERAL LT DA +NPANYTVWQYRREILKALNKDL++E+ +I + I N KNYQVW
Sbjct: 61 EKSERALNLTKDAAALNPANYTVWQYRREILKALNKDLNEEMDFIEKIIVYNQPKNYQVW 120
Query: 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233
HR+++VEW+ + +E LT +LA+DAKNYHAWQHRQW+I + D G LEY
Sbjct: 121 HHRKVLVEWLQDAAKEKYLTETVLAKDAKNYHAWQHRQWIIKTFNLYD-GELEY 173
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307198187|gb|EFN79208.1| Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 102/135 (75%), Gaps = 2/135 (1%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
I + K + ++Y+R A++ +GEKSERALALT D +NPANYTVWQYRREIL+AL KDL
Sbjct: 47 IAYSEKFKDAYDYIR-AILKSGEKSERALALTEDCTWLNPANYTVWQYRREILQALGKDL 105
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
+ ELKY G+ I+ NSKNYQVW HR++IVEW+ +P EELA T IL +DAKNYH WQHRQW
Sbjct: 106 YDELKYTGKMIENNSKNYQVWHHRKVIVEWLQDPSEELAFTETILCKDAKNYHTWQHRQW 165
Query: 219 VINLLDDDDRGVLEY 233
I + D+ LEY
Sbjct: 166 CIQTFNLYDKE-LEY 179
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|58801177|dbj|BAD89509.1| farnesyltransferase/geranylgeranyltransferase type I alpha subunit [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 114/217 (52%), Gaps = 60/217 (27%)
Query: 4 SSSDEDNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHD 63
S + + +W+ YK R EW D+ P+P+DDGP PVV
Sbjct: 2 SDCGDSDVLWIPYKERPEWSDVTPVPEDDGPNPVV------------------------- 36
Query: 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123
VI H+ +F E ++Y R AV+ + EKS
Sbjct: 37 ------------VIAHSEKF----------------------EDVYDYFR-AVLQSNEKS 61
Query: 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183
ER L LT DA+ +NPANYTVWQYRR++LK LN DL EL Y+ IK + KNYQVW HR+
Sbjct: 62 ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHHRR 121
Query: 184 IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220
++VEW+ +P EL LT L QD KNYHAWQHRQW I
Sbjct: 122 VLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAI 158
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195342536|ref|XP_002037856.1| GM18072 [Drosophila sechellia] gi|194132706|gb|EDW54274.1| GM18072 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 130/232 (56%), Gaps = 66/232 (28%)
Query: 1 MTDSSSDED-NEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGL 59
M DSS +E W+ Y R +WKD+ P+ QDDGP PVV+I
Sbjct: 1 MGDSSDEEYLGTDWLAYSERSDWKDVEPLAQDDGPNPVVSI------------------- 41
Query: 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119
A++Q++ RE+ ++Y+R A++ +
Sbjct: 42 ---------AYSQKF---------------REV----------------FDYMR-AIIAS 60
Query: 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179
GEKS+RAL LT DA+ +NPANYTVWQYRR++L+ L DL++EL Y+ E I +NSKNYQVW
Sbjct: 61 GEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLYEELDYLTEVIGQNSKNYQVW 120
Query: 180 RHRQIIVEWMGEPDEELALT--AAILAQDAKNYHAWQHRQWVI---NLLDDD 226
HR++IVE + +P EL LT A + DAKNYHAWQHRQW I NL DD+
Sbjct: 121 HHRRVIVEILNDPSNELELTENALVNEGDAKNYHAWQHRQWAIRSFNLYDDE 172
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195576598|ref|XP_002078162.1| GD22689 [Drosophila simulans] gi|194190171|gb|EDX03747.1| GD22689 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 130/232 (56%), Gaps = 66/232 (28%)
Query: 1 MTDSSSDED-NEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGL 59
M DSS +E W+ Y R +WKD+ P+ QDDGP PVV+I
Sbjct: 1 MGDSSDEEYLGTDWLAYSERSDWKDVEPLAQDDGPNPVVSI------------------- 41
Query: 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119
A++Q++ RE+ ++Y+R A++ +
Sbjct: 42 ---------AYSQKF---------------REV----------------FDYMR-AIIAS 60
Query: 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179
GEKS+RAL LT DA+ +NPANYTVWQYRR++L+ L DL++EL Y+ E I +NSKNYQVW
Sbjct: 61 GEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLYEELDYLTEVIGQNSKNYQVW 120
Query: 180 RHRQIIVEWMGEPDEELALT--AAILAQDAKNYHAWQHRQWVI---NLLDDD 226
HR++IVE + +P EL LT A + DAKNYHAWQHRQW I NL DD+
Sbjct: 121 HHRRVIVEILNDPSNELELTENALVNEGDAKNYHAWQHRQWAIRSFNLYDDE 172
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156537568|ref|XP_001607662.1| PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 117/226 (51%), Gaps = 65/226 (28%)
Query: 4 SSSDEDNE-----IWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEG 58
SS DE N WV Y RE+W+D+ P+ QDDGP P+VAIAYS+K
Sbjct: 8 SSDDEVNGDGPPMAWVPYSQREQWRDVVPLAQDDGPNPIVAIAYSEK------------- 54
Query: 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN 118
F H DY R ++ K+E
Sbjct: 55 ----------------FRETH-------------DYFRAILKAKEKSE------------ 73
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQV 178
RAL LTAD I +N NYTVWQYRREILK L DL ELK++ IK N KNYQV
Sbjct: 74 ------RALNLTADCIWLNAGNYTVWQYRREILKELGIDLKDELKFVEVMIKCNFKNYQV 127
Query: 179 WRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224
W HR++IVEWM +P EL T+ IL +DAKNYHAWQHRQWVI+ +
Sbjct: 128 WHHRKVIVEWMQDPSAELKFTSTILEKDAKNYHAWQHRQWVISTFN 173
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158300946|ref|XP_320743.4| AGAP011767-PA [Anopheles gambiae str. PEST] gi|157013403|gb|EAA00362.4| AGAP011767-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 99/131 (75%), Gaps = 4/131 (3%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
IQ + + + YLR A+++ EKS+RAL LT DA +N ANYTVWQYRR+ILKALN DL
Sbjct: 42 IQYSERFNDVFGYLR-AIISRQEKSQRALELTKDAAKLNAANYTVWQYRRDILKALNADL 100
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
++EL YIG I +N KNYQVW HR++IVEW+ +P ELALT +IL DAKNYHAWQHRQW
Sbjct: 101 YEELSYIGRVIADNPKNYQVWHHRRVIVEWLDDPSSELALTESILDMDAKNYHAWQHRQW 160
Query: 219 VI---NLLDDD 226
VI NL DD+
Sbjct: 161 VIKNYNLFDDE 171
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312381712|gb|EFR27398.1| hypothetical protein AND_05934 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 98/131 (74%), Gaps = 4/131 (3%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
IQ + K + YLR A+++ EKSERAL LT DA +N ANYTVWQYRR+ILK LN DL
Sbjct: 42 IQYSEKFNDVFGYLR-AIISRQEKSERALELTKDAAKLNAANYTVWQYRRDILKDLNADL 100
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
++EL YIG+ I EN KNYQVW HR++IVEW+ +P EL LT +IL DAKNYHAWQHRQW
Sbjct: 101 YEELSYIGKVIAENPKNYQVWHHRRVIVEWLDDPSSELTLTESILDMDAKNYHAWQHRQW 160
Query: 219 VI---NLLDDD 226
VI NL DD+
Sbjct: 161 VIKKYNLFDDE 171
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322802574|gb|EFZ22869.1| hypothetical protein SINV_09819 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 95/126 (75%), Gaps = 1/126 (0%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
I + K + ++Y R A++ +GEKSERALALT I +NPANYTVWQYRREILKAL KDL
Sbjct: 45 IAYSEKFKDAYDYFR-AILKSGEKSERALALTEACIWLNPANYTVWQYRREILKALAKDL 103
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
++ELKY IK NSKNYQVW HR+IIVEW+ +P +ELA +L +DAKNYHAWQHRQW
Sbjct: 104 YEELKYTDRMIKYNSKNYQVWHHRKIIVEWLQDPRDELAFIETVLCKDAKNYHAWQHRQW 163
Query: 219 VINLLD 224
I +
Sbjct: 164 CIQTFN 169
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195437352|ref|XP_002066604.1| GK24478 [Drosophila willistoni] gi|194162689|gb|EDW77590.1| GK24478 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 128/236 (54%), Gaps = 66/236 (27%)
Query: 1 MTDSSSDE-DNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGL 59
M+DSS DE W+ Y R++W+D++P+ QDDGP PVV+I
Sbjct: 1 MSDSSDDEYFCTDWLPYSERKDWEDIKPLEQDDGPNPVVSI------------------- 41
Query: 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119
A++Q++ + DY R A++
Sbjct: 42 ---------AYSQKFRDV--------------FDYTR------------------AIIAK 60
Query: 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179
GEKS RAL LT DA+ +NPANYTVWQYRR+IL+ + DL+ EL Y+GE I +N+KNYQVW
Sbjct: 61 GEKSRRALDLTTDALRLNPANYTVWQYRRDILREIEADLNVELDYLGEVIGQNAKNYQVW 120
Query: 180 RHRQIIVEWMGEPDEELALTAAILAQ--DAKNYHAWQHRQWVI---NLLDDDDRGV 230
HR++IVE + +P EL LT L DAKNYHAWQHRQW I NL DD+ R V
Sbjct: 121 HHRRVIVEMLNDPSNELELTKNALDNDGDAKNYHAWQHRQWAIKTFNLYDDELRYV 176
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 235 | ||||||
| UNIPROTKB|F1N081 | 375 | FNTA "Protein farnesyltransfer | 0.514 | 0.322 | 0.572 | 1.9e-35 | |
| UNIPROTKB|P29702 | 375 | FNTA "Protein farnesyltransfer | 0.514 | 0.322 | 0.572 | 1.9e-35 | |
| FB|FBgn0031633 | 331 | CG2976 [Drosophila melanogaste | 0.540 | 0.383 | 0.556 | 2.4e-35 | |
| UNIPROTKB|F1NJX8 | 347 | FNTA "Uncharacterized protein" | 0.553 | 0.374 | 0.55 | 4e-35 | |
| UNIPROTKB|H0YE66 | 207 | H0YE66 "Uncharacterized protei | 0.514 | 0.584 | 0.572 | 8.3e-35 | |
| UNIPROTKB|H0YCW1 | 197 | FNTA "Protein farnesyltransfer | 0.514 | 0.614 | 0.572 | 8.3e-35 | |
| UNIPROTKB|E2RHY8 | 380 | FNTA "Uncharacterized protein" | 0.514 | 0.318 | 0.572 | 8.3e-35 | |
| UNIPROTKB|E9PQP6 | 249 | FNTA "Protein farnesyltransfer | 0.514 | 0.485 | 0.572 | 8.3e-35 | |
| UNIPROTKB|P49354 | 379 | FNTA "Protein farnesyltransfer | 0.514 | 0.319 | 0.572 | 8.3e-35 | |
| ZFIN|ZDB-GENE-030131-866 | 374 | fnta "farnesyltransferase, CAA | 0.570 | 0.358 | 0.544 | 1.3e-34 |
| UNIPROTKB|F1N081 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 71/124 (57%), Positives = 91/124 (73%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K + ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L K
Sbjct: 84 VQIIYSEKFQDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 142
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DLH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 143 DLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILTQDAKNYHAWQHR 202
Query: 217 QWVI 220
QWVI
Sbjct: 203 QWVI 206
|
|
| UNIPROTKB|P29702 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 71/124 (57%), Positives = 91/124 (73%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K + ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L K
Sbjct: 84 VQIIYSEKFQDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 142
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DLH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 143 DLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILTQDAKNYHAWQHR 202
Query: 217 QWVI 220
QWVI
Sbjct: 203 QWVI 206
|
|
| FB|FBgn0031633 CG2976 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 74/133 (55%), Positives = 94/133 (70%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
I + K ++Y+R A++ GEKS+RAL LT DA+ +NPANYTVWQYRR++L+ L DL
Sbjct: 41 IAYSQKFREVFDYMR-AIIARGEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADL 99
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD--AKNYHAWQHR 216
+ EL Y+ E I +NSKNYQVW HR++IVE + +P EL LT L D AKNYHAWQHR
Sbjct: 100 YAELDYLTEVIGQNSKNYQVWHHRRVIVEMLNDPSNELELTENALVNDGDAKNYHAWQHR 159
Query: 217 QWVI---NLLDDD 226
QW I NL DD+
Sbjct: 160 QWAIRSFNLYDDE 172
|
|
| UNIPROTKB|F1NJX8 FNTA "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 77/140 (55%), Positives = 99/140 (70%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K ++Y R AV+ E+SERA LTADAI +N ANYTVW +RR +L++L K
Sbjct: 54 VQIIYSEKFRDVYDYFR-AVLQKDERSERAFKLTADAIELNAANYTVWHFRRVLLQSLGK 112
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DL++ELKYI I++ KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 113 DLYEELKYITAIIEDQPKNYQVWHHRRVLVEWLQDPSQELEFIADILNQDAKNYHAWQHR 172
Query: 217 QWVIN---LLDDDDRGVLEY 233
QWVI L DD+ LEY
Sbjct: 173 QWVIQEFKLWDDE----LEY 188
|
|
| UNIPROTKB|H0YE66 H0YE66 "Uncharacterized protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 71/124 (57%), Positives = 90/124 (72%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L K
Sbjct: 45 VQIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 103
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DLH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 104 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 163
Query: 217 QWVI 220
QWVI
Sbjct: 164 QWVI 167
|
|
| UNIPROTKB|H0YCW1 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 71/124 (57%), Positives = 90/124 (72%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L K
Sbjct: 70 VQIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 128
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DLH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 129 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 188
Query: 217 QWVI 220
QWVI
Sbjct: 189 QWVI 192
|
|
| UNIPROTKB|E2RHY8 FNTA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 71/124 (57%), Positives = 90/124 (72%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L K
Sbjct: 89 VQIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 147
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DLH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 148 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHR 207
Query: 217 QWVI 220
QWVI
Sbjct: 208 QWVI 211
|
|
| UNIPROTKB|E9PQP6 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 71/124 (57%), Positives = 90/124 (72%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L K
Sbjct: 26 VQIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 84
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DLH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 85 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 144
Query: 217 QWVI 220
QWVI
Sbjct: 145 QWVI 148
|
|
| UNIPROTKB|P49354 FNTA "Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 71/124 (57%), Positives = 90/124 (72%)
Query: 99 IQI--APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156
+QI + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L K
Sbjct: 88 VQIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
DLH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHR
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206
Query: 217 QWVI 220
QWVI
Sbjct: 207 QWVI 210
|
|
| ZFIN|ZDB-GENE-030131-866 fnta "farnesyltransferase, CAAX box, alpha" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/136 (54%), Positives = 94/136 (69%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
KI + K ++ R + N E+SERA ALTA+AI +N ANYTVW YRR +L+AL KD
Sbjct: 67 KIAYSEKFTDVFDMFRALLKN-DERSERAFALTAEAIDLNAANYTVWHYRRVLLQALKKD 125
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I++ KNYQVW HR+++VEW+ +P +EL A IL+QDAKNYHAWQHRQ
Sbjct: 126 LREEMNYITAIIEDQPKNYQVWHHRRMVVEWLSDPADELQFVAEILSQDAKNYHAWQHRQ 185
Query: 218 WVINLLDDDDRGVLEY 233
WVI D G LEY
Sbjct: 186 WVIQEYKLWD-GELEY 200
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P49354 | FNTA_HUMAN | 2, ., 5, ., 1, ., 5, 9 | 0.5691 | 0.5191 | 0.3218 | yes | N/A |
| Q04631 | FNTA_RAT | 2, ., 5, ., 1, ., 5, 9 | 0.5528 | 0.5191 | 0.3236 | yes | N/A |
| P29702 | FNTA_BOVIN | 2, ., 5, ., 1, ., 5, 9 | 0.5691 | 0.5191 | 0.3253 | yes | N/A |
| Q61239 | FNTA_MOUSE | 2, ., 5, ., 1, ., 5, 9 | 0.5528 | 0.5191 | 0.3236 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.5.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.5.1.59 | 0.737 |
| 4th Layer | 2.5.1.58 | 0.737 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 235 | |||
| PLN02789 | 320 | PLN02789, PLN02789, farnesyltranstransferase | 7e-45 | |
| COG5536 | 328 | COG5536, BET4, Protein prenyltransferase, alpha su | 6e-20 | |
| PLN02789 | 320 | PLN02789, PLN02789, farnesyltranstransferase | 4e-19 | |
| COG5536 | 328 | COG5536, BET4, Protein prenyltransferase, alpha su | 1e-12 | |
| COG5536 | 328 | COG5536, BET4, Protein prenyltransferase, alpha su | 9e-09 | |
| pfam01239 | 30 | pfam01239, PPTA, Protein prenyltransferase alpha s | 2e-06 | |
| pfam01239 | 30 | pfam01239, PPTA, Protein prenyltransferase alpha s | 5e-06 | |
| pfam01239 | 30 | pfam01239, PPTA, Protein prenyltransferase alpha s | 1e-04 | |
| PLN02789 | 320 | PLN02789, PLN02789, farnesyltranstransferase | 3e-04 | |
| pfam01239 | 30 | pfam01239, PPTA, Protein prenyltransferase alpha s | 0.001 | |
| pfam01239 | 30 | pfam01239, PPTA, Protein prenyltransferase alpha s | 0.002 |
| >gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 7e-45
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 3/129 (2%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
I P+ +Y R AV + E+S RAL LTAD I +NP NYTVW +RR L+AL+ DL
Sbjct: 30 IAYTPEFREAMDYFR-AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADL 88
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE--PDEELALTAAILAQDAKNYHAWQHR 216
+EL + + ++N KNYQ+W HR+ + E +G ++EL T IL+ DAKNYHAW HR
Sbjct: 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHR 148
Query: 217 QWVINLLDD 225
QWV+ L
Sbjct: 149 QWVLRTLGG 157
|
Length = 320 |
| >gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 6e-20
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 14/129 (10%)
Query: 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKD-------LHQELKYIGEKIKENS 173
E S RAL LT + I NP YT+W YR ILK + L EL ++ E +K+N
Sbjct: 46 EYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNP 105
Query: 174 KNYQVWRHRQIIVEWMGEP--DEELALTAAILAQDAKNYHAWQHRQWVINLLDD-----D 226
KNYQ+W HRQ ++E +P EL +T +L D++NYH W +R+WV+ ++D D
Sbjct: 106 KNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSD 165
Query: 227 DRGVLEYET 235
+ LEY T
Sbjct: 166 LKHELEYTT 174
|
Length = 328 |
| >gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 4e-19
Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQR--EIDYCRDKIQI 101
+ + DEL Y L+ DVRNNSAW QRYFVI + R E+ Y D I
Sbjct: 153 RTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212
Query: 102 APKNESPWNYLRG 114
P+NESPW YLRG
Sbjct: 213 NPRNESPWRYLRG 225
|
Length = 320 |
| >gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 67 NSAWTQRYFVINH---TTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123
+ W R+ ++ H ++ ++ E+D+ + ++ PKN W++ + + + S
Sbjct: 66 YTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPS 125
Query: 124 -ERALALTADAITMNPANYTVWQYRREILK----ALNK-DLHQELKYIGEKIKENSKNYQ 177
R L +T + + NY VW YRR +L+ N DL EL+Y I+ + N
Sbjct: 126 WGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNS 185
Query: 178 VWRHRQIIVEWM---GEP------DEELALTAAILAQDAKNYHAWQHRQWVINL 222
W HR I +E G+ ++EL + D N W + + V +
Sbjct: 186 AWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239
|
Length = 328 |
| >gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-09
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 37 VVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQR-----E 91
+ I + EL Y LI D+ NNSAW RY I +VI + E
Sbjct: 154 LRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN-RGDVISQKYLEKE 212
Query: 92 IDYCRDKIQIAPKNESPWNYLRG 114
++Y DKI P N+S W YLRG
Sbjct: 213 LEYIFDKIFTDPDNQSVWGYLRG 235
|
Length = 328 |
| >gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 194 EELALTAAILAQDAKNYHAWQHRQWVINLL 223
EEL LT +L D KNY AW +R+W++ L
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLLEKL 30
|
Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30 |
| >gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 5e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 125 RALALTADAITMNPANYTVWQYRREILKAL 154
L LT + ++P NY+ W YRR +L+ L
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLLEKL 30
|
Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30 |
| >gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 1e-04
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 160 QELKYIGEKIKENSKNYQVWRHRQIIVEWM 189
+EL+ + ++ + KNY W +R+ ++E +
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLLEKL 30
|
Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30 |
| >gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 34/130 (26%)
Query: 52 ELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111
EL + ++S D +N AW+ R +V+ + E++YC ++ +N S WN
Sbjct: 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE-----DELEYCHQLLEEDVRNNSAWN- 180
Query: 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171
+R +T R +L L ELKY + I
Sbjct: 181 ------------QRYFVIT----------------RSPLLGGLEAMRDSELKYTIDAILA 212
Query: 172 NSKNYQVWRH 181
N +N WR+
Sbjct: 213 NPRNESPWRY 222
|
Length = 320 |
| >gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 51 DELSYIEGLISHDVRNNSAWTQRYFVINH 79
+EL E L+ D +N SAW R +++
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLLEK 29
|
Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30 |
| >gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 90 REIDYCRDKIQIAPKNESPWNYLRG 114
E++ +++ PKN S WNY R
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRW 25
|
Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 235 | |||
| PLN02789 | 320 | farnesyltranstransferase | 100.0 | |
| KOG0530|consensus | 318 | 99.95 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.95 | |
| KOG4626|consensus | 966 | 99.92 | ||
| KOG4626|consensus | 966 | 99.91 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG1126|consensus | 638 | 99.88 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| KOG0530|consensus | 318 | 99.88 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.87 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.83 | |
| KOG1126|consensus | 638 | 99.83 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| KOG0529|consensus | 421 | 99.81 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.81 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.81 | |
| KOG0529|consensus | 421 | 99.81 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.81 | |
| KOG1155|consensus | 559 | 99.8 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| KOG1155|consensus | 559 | 99.8 | ||
| KOG0547|consensus | 606 | 99.8 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| KOG0547|consensus | 606 | 99.78 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.77 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| KOG1125|consensus | 579 | 99.73 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.72 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.72 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.7 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.69 | |
| KOG0553|consensus | 304 | 99.67 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.65 | |
| COG5536 | 328 | BET4 Protein prenyltransferase, alpha subunit [Pos | 99.64 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.64 | |
| KOG0548|consensus | 539 | 99.61 | ||
| KOG0553|consensus | 304 | 99.61 | ||
| KOG1125|consensus | 579 | 99.6 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| COG5536 | 328 | BET4 Protein prenyltransferase, alpha subunit [Pos | 99.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.58 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.58 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.58 | |
| KOG1173|consensus | 611 | 99.57 | ||
| KOG0548|consensus | 539 | 99.56 | ||
| KOG0550|consensus | 486 | 99.53 | ||
| KOG3060|consensus | 289 | 99.53 | ||
| KOG0550|consensus | 486 | 99.52 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.52 | |
| KOG2076|consensus | 895 | 99.51 | ||
| KOG1173|consensus | 611 | 99.51 | ||
| KOG0624|consensus | 504 | 99.5 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.47 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.45 | |
| KOG2002|consensus | 1018 | 99.43 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.42 | |
| KOG2002|consensus | 1018 | 99.42 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG0624|consensus | 504 | 99.38 | ||
| KOG4162|consensus | 799 | 99.36 | ||
| KOG2076|consensus | 895 | 99.36 | ||
| KOG1127|consensus | 1238 | 99.34 | ||
| KOG1174|consensus | 564 | 99.32 | ||
| KOG4162|consensus | 799 | 99.32 | ||
| KOG3060|consensus | 289 | 99.31 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.31 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.3 | |
| KOG1129|consensus | 478 | 99.3 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.3 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.3 | |
| KOG2003|consensus | 840 | 99.29 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.29 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.26 | |
| KOG1129|consensus | 478 | 99.25 | ||
| KOG1156|consensus | 700 | 99.24 | ||
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.23 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.22 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.22 | |
| KOG2003|consensus | 840 | 99.22 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.2 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.18 | |
| KOG1128|consensus | 777 | 99.17 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.16 | |
| KOG0495|consensus | 913 | 99.16 | ||
| KOG1156|consensus | 700 | 99.15 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.15 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.13 | |
| KOG1840|consensus | 508 | 99.13 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.12 | |
| KOG4234|consensus | 271 | 99.09 | ||
| KOG0495|consensus | 913 | 99.08 | ||
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.07 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.04 | |
| KOG1128|consensus | 777 | 99.04 | ||
| KOG1174|consensus | 564 | 99.02 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.01 | |
| KOG1840|consensus | 508 | 99.01 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.98 | |
| KOG0543|consensus | 397 | 98.97 | ||
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.91 | |
| KOG2376|consensus | 652 | 98.91 | ||
| KOG0543|consensus | 397 | 98.91 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.86 | |
| KOG4234|consensus | 271 | 98.86 | ||
| KOG4648|consensus | 536 | 98.85 | ||
| KOG4648|consensus | 536 | 98.84 | ||
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.83 | |
| KOG1127|consensus | 1238 | 98.82 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.81 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.78 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.76 | |
| KOG4555|consensus | 175 | 98.76 | ||
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.75 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.74 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.67 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.67 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.65 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.62 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.58 | |
| KOG4642|consensus | 284 | 98.57 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 98.57 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.56 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.56 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.51 | |
| KOG4555|consensus | 175 | 98.46 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.41 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.4 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.36 | |
| KOG2376|consensus | 652 | 98.36 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.32 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.32 | |
| KOG0376|consensus | 476 | 98.31 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.28 | |
| KOG3785|consensus | 557 | 98.27 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.24 | |
| KOG0376|consensus | 476 | 98.18 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.18 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.14 | |
| KOG0545|consensus | 329 | 98.12 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.08 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.05 | |
| KOG4642|consensus | 284 | 98.04 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.04 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.02 | |
| PF01239 | 31 | PPTA: Protein prenyltransferase alpha subunit repe | 98.01 | |
| KOG2053|consensus | 932 | 98.01 | ||
| KOG2796|consensus | 366 | 97.98 | ||
| KOG3785|consensus | 557 | 97.98 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.91 | |
| PF01239 | 31 | PPTA: Protein prenyltransferase alpha subunit repe | 97.9 | |
| KOG1308|consensus | 377 | 97.9 | ||
| KOG1130|consensus | 639 | 97.88 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.86 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.82 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.78 | |
| KOG2053|consensus | 932 | 97.78 | ||
| KOG0551|consensus | 390 | 97.75 | ||
| KOG1308|consensus | 377 | 97.71 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.69 | |
| KOG4340|consensus | 459 | 97.69 | ||
| KOG0545|consensus | 329 | 97.67 | ||
| KOG3081|consensus | 299 | 97.66 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.65 | |
| KOG3081|consensus | 299 | 97.64 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| KOG1130|consensus | 639 | 97.58 | ||
| KOG0551|consensus | 390 | 97.58 | ||
| KOG2796|consensus | 366 | 97.57 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| KOG1915|consensus | 677 | 97.55 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.5 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 97.44 | |
| KOG1915|consensus | 677 | 97.42 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.41 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.31 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.29 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.24 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.23 | |
| KOG2610|consensus | 491 | 97.19 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.07 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.04 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.01 | |
| KOG1070|consensus | 1710 | 96.96 | ||
| KOG4340|consensus | 459 | 96.96 | ||
| KOG1310|consensus | 758 | 96.95 | ||
| KOG2396|consensus | 568 | 96.91 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.87 | |
| KOG3824|consensus | 472 | 96.86 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.85 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.85 | |
| KOG1310|consensus | 758 | 96.81 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 96.81 | |
| KOG2610|consensus | 491 | 96.8 | ||
| KOG1941|consensus | 518 | 96.78 | ||
| KOG2047|consensus | 835 | 96.66 | ||
| KOG2396|consensus | 568 | 96.64 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.63 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.52 | |
| KOG3824|consensus | 472 | 96.51 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.48 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.47 | |
| KOG1070|consensus | 1710 | 96.46 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.46 | |
| KOG2047|consensus | 835 | 96.44 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.39 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.38 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.35 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.3 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.28 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.28 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.27 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.22 | |
| KOG4507|consensus | 886 | 96.18 | ||
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.18 | |
| KOG1941|consensus | 518 | 95.99 | ||
| KOG3364|consensus | 149 | 95.97 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.96 | |
| KOG3617|consensus | 1416 | 95.88 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.85 | |
| KOG2471|consensus | 696 | 95.81 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.79 | |
| KOG2471|consensus | 696 | 95.79 | ||
| KOG4507|consensus | 886 | 95.72 | ||
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.45 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.42 | |
| KOG1550|consensus | 552 | 95.4 | ||
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.28 | |
| KOG1550|consensus | 552 | 95.0 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.9 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.82 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.81 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 94.79 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.64 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.55 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.31 | |
| KOG3364|consensus | 149 | 93.89 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.72 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.71 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.61 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.54 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.48 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.13 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.11 | |
| KOG2422|consensus | 665 | 93.02 | ||
| KOG1585|consensus | 308 | 92.91 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.88 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 92.54 | |
| KOG4814|consensus | 872 | 92.51 | ||
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 92.41 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.77 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.7 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 91.54 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.17 | |
| KOG3617|consensus | 1416 | 91.09 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 90.43 | |
| KOG1585|consensus | 308 | 90.28 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.73 | |
| KOG1586|consensus | 288 | 89.4 | ||
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 89.29 | |
| KOG0546|consensus | 372 | 88.54 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.31 | |
| KOG1258|consensus | 577 | 88.23 | ||
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 87.87 | |
| KOG3807|consensus | 556 | 87.63 | ||
| PF13226 | 277 | DUF4034: Domain of unknown function (DUF4034) | 87.57 | |
| KOG1586|consensus | 288 | 87.5 | ||
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 87.12 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 87.0 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.37 | |
| PF13226 | 277 | DUF4034: Domain of unknown function (DUF4034) | 84.69 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 84.32 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.56 | |
| KOG1914|consensus | 656 | 83.02 | ||
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.83 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 82.62 | |
| KOG1258|consensus | 577 | 82.38 | ||
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 81.82 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 81.62 | |
| PF14929 | 547 | TAF1_subA: TAF RNA Polymerase I subunit A | 81.24 | |
| KOG1914|consensus | 656 | 81.05 |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=266.95 Aligned_cols=205 Identities=27% Similarity=0.528 Sum_probs=187.3
Q ss_pred ccccccchhhhhccCCCCCCCCCCchhHhhhhhhh--------------hcHHHHHHHHHhHHhcCCCchhHhhhHHHHH
Q psy4772 12 IWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKC--------------NLFSDELSYIEGLISHDVRNNSAWTQRYFVI 77 (235)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--------------~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l 77 (235)
.++.|..+++|+||+|++|++|++|++.|.|++.+ +..++|+..++++|+++|+++.+|+.||.++
T Consensus 2 ~~~~~~~~~~~~d~~p~~~~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL 81 (320)
T PLN02789 2 EWVPLSQRPEWADVTPIPQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCL 81 (320)
T ss_pred CCCCcccCCCcCCccccCCCCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHH
Confidence 45668888899999999999999999999999654 2459999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc--HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 78 NHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS--ERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 78 ~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~--~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
..+|. .+++|+..++++++.+|+++.+|+ .||.++..+|.. ++++.+++++|+++|+++.||++|++++..++
T Consensus 82 ~~L~~----~l~eeL~~~~~~i~~npknyqaW~-~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 82 EALDA----DLEEELDFAEDVAEDNPKNYQIWH-HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHcch----hHHHHHHHHHHHHHHCCcchHHhH-HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence 99873 245899999999999999999995 688999988874 78999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc---CCc----hHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 156 KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM---GEP----DEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 156 ~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l---~~~----~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
. +++|+.+++++|++||+|.++|++|++++.++ |++ ++++++++++|.++|+|.++|+|++.++..
T Consensus 157 ~-~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 157 G-WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred h-HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 5 99999999999999999999999999999876 333 579999999999999999999999999965
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=202.06 Aligned_cols=203 Identities=29% Similarity=0.546 Sum_probs=177.3
Q ss_pred ccccchhhhhccCCCCCCCCCCchhHhhhhhhhhc----H----------HHHHHHHHhHHhcCCCchhHhhhHHHHHhh
Q psy4772 14 VYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNL----F----------SDELSYIEGLISHDVRNNSAWTQRYFVINH 79 (235)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~----~----------~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~ 79 (235)
+.|..+-+|+||+|++|++|++|++.|+|++.|.+ | ..|+.+.+.+|.++|-|+.+|..|..|+..
T Consensus 10 ~~y~d~~dw~Dv~PlpqdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~ 89 (318)
T KOG0530|consen 10 VLYSDRYDWSDVTPLPQDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRH 89 (318)
T ss_pred hhhhhhcccccCccCCCCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 56666668999999999999999999999987632 1 678899999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH-HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhH
Q psy4772 80 TTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE-RALALTADAITMNPANYTVWQYRREILKALNKDL 158 (235)
Q Consensus 80 ~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~-eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~ 158 (235)
++. .+.+.++....+++-+|+++..|.+++ .+....|... ..|++++.+|..+.++++||.||.|++..++ .|
T Consensus 90 l~~----dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~-~~ 163 (318)
T KOG0530|consen 90 LMS----DLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFK-DY 163 (318)
T ss_pred hHH----HHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHh-hH
Confidence 864 467889999999999999999996544 8888888877 8999999999999999999999999999998 59
Q ss_pred HHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC------chHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE------PDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 159 eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+.++.++.++|+.|-.|-+||++|-+++..... .+.++.+..+.|.+.|.|.|+|.|+.=++..
T Consensus 164 ~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 164 EDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999999999999999999988866333 4678899999999999999999999888764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=209.72 Aligned_cols=134 Identities=31% Similarity=0.595 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHh-HHHHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSERALALTADAITMNPANYTVWQYRREILKALNKD-LHQELKYIG 166 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~-~eeal~~~~ 166 (235)
++|+..+.++|+++|.++++|+ .||.++..+| .+++|+.+++++++.+|+++++|+||++++.++++. .++++.+++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~-~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWH-FRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHH-HHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 4899999999999999999995 6889999998 589999999999999999999999999999999842 378999999
Q ss_pred HHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 167 EKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
++|+.+|+|+++|++|++++..+|++++|+++++++|++||+|.+||++|++++..+
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999766
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=195.75 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=170.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----------------------------HHHHHHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----------------------------EVIQREIDYCRD 97 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----------------------------~~~~~Al~~~~k 97 (235)
|..-.|++.|++|++++|..++|+.++|.|+...+.|+. +.++=||..|++
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 567888999999999999999999999999888887764 357789999999
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+|.+.|+++.|++ ++|.++...|+..||..+|.++|.++|.++++.+++|.++.+.|+ +++|..+|.++++.+|....
T Consensus 312 al~~~P~F~~Ay~-NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 312 ALELQPNFPDAYN-NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHhcCCCchHHHh-HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh
Confidence 9999999999995 799999999999999999999999999999999999999999995 89999999999999999999
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+.++++.++..+|++++|+.+|+.||.++|..+.++.++|..+.-+|+.++|..-|
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876554
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=190.82 Aligned_cols=170 Identities=8% Similarity=0.076 Sum_probs=101.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|...+|..+|.+||.++|..+++.+++|.++..+|.++ +|...|.++|...|.+..+++ ++|.+++..|++++|
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e-----~A~~ly~~al~v~p~~aaa~n-NLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE-----EATRLYLKALEVFPEFAAAHN-NLASIYKQQGNLDDA 407 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch-----HHHHHHHHHHhhChhhhhhhh-hHHHHHHhcccHHHH
Confidence 44555555555555555555555555555555555543 455666666666666666663 455666666666666
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+.+|+.+|++.|..++++.++|.+|..+|+ ...|+.+|.+||.++|-...|+.+++.++...|+..+|++.|+.++.++
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 666666666666666666666666666663 5666666666666666666666666666666666666666666666666
Q ss_pred CCChHHhHHHHHHHhhc
Q psy4772 207 AKNYHAWQHRQWVINLL 223 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l 223 (235)
|+++.|++++..+++++
T Consensus 487 PDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIV 503 (966)
T ss_pred CCCchhhhHHHHHHHHH
Confidence 66666666666655543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=188.11 Aligned_cols=180 Identities=9% Similarity=0.029 Sum_probs=167.9
Q ss_pred hcHHHHHHHHHhHHhc---CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 47 NLFSDELSYIEGLISH---DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~---~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
+.|++|+.+|++++.. .|..+.+|..+|.++..+|+++ +|+..|++++.++|++..+| +.+|.++...|++
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~-----eA~~~~~kal~l~P~~~~~~-~~la~~~~~~g~~ 381 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL-----EALADLSKSIELDPRVTQSY-IKRASMNLELGDP 381 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHCCCH
Confidence 5789999999999986 5889999999999999999875 79999999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
++|+..++++++++|+++.+|+++|.++..+| ++++|+.+|+++++++|++..+|.++|.++..+|++++|+..+++++
T Consensus 382 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG-EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
..+|+++.+|.++|.++..+|+..+++-.|
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999887765433
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=184.05 Aligned_cols=180 Identities=20% Similarity=0.209 Sum_probs=171.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++.+.|+.+|.+||++||.++=++..+|-=+..+.+|+ +|..+|++||..+|++|.|| |.+|.++.+.|+++.|
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d-----~a~~~fr~Al~~~~rhYnAw-YGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFD-----KAMKSFRKALGVDPRHYNAW-YGLGTVYLKQEKLEFA 508 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHH-----hHHHHHHhhhcCCchhhHHH-HhhhhheeccchhhHH
Confidence 67899999999999999999999999998777776664 89999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.-.|++|+++||.+.....+.|.++.++|+ .++|+.++++|+.++|+|+..-++++.++..++++++|+..++..-++-
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999995 8999999999999999999999999999999999999999999999999
Q ss_pred CCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 207 AKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
|++.+.++-.|.++..+|+++.|...+
T Consensus 588 P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 999999999999999999998776554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=184.64 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=168.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH---------------------------------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE--------------------------------------- 86 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~--------------------------------------- 86 (235)
.|++++|+..++++|+++|++..+|+.+|.++..+|+++++
T Consensus 173 l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~ 252 (615)
T TIGR00990 173 LGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILE 252 (615)
T ss_pred hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999886432
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHHHh---CCCCCc
Q psy4772 87 --------------------------------------------------------VIQREIDYCRDKIQI---APKNES 107 (235)
Q Consensus 87 --------------------------------------------------------~~~~Al~~~~kal~l---~p~~~~ 107 (235)
.+++|+..|.+++.+ .|....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~ 332 (615)
T TIGR00990 253 TKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI 332 (615)
T ss_pred cCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH
Confidence 245677778888876 477778
Q ss_pred hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 108 aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
+| +.+|.++..+|++++|+..++++++++|.+..+|..+|.++..+| ++++|+..++++++.+|+++.+|+++|.++.
T Consensus 333 a~-~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 333 AL-NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG-DPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88 578999999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 188 WMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
.+|++++|+.+|++++.++|++..+|.++|.++..+|+..++...
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999988766543
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=163.82 Aligned_cols=162 Identities=29% Similarity=0.587 Sum_probs=143.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~e 125 (235)
.+|.+.+.+|+.+|..+... .+|++.+..+|.+||.+++.|.|++ .|+..++ +..+
T Consensus 40 e~fr~~m~YfRAI~~~~E~S----------------------~RAl~LT~d~i~lNpAnYTVW~yRr-~iL~~l~~dL~~ 96 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS----------------------PRALQLTEDAIRLNPANYTVWQYRR-VILRHLMSDLNK 96 (318)
T ss_pred hhHHHHHHHHHHHHhccccC----------------------HHHHHHHHHHHHhCcccchHHHHHH-HHHHHhHHHHHH
Confidence 47899999888877754332 4799999999999999999998876 7776654 6899
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHH-HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLH-QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~e-eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.++..+.+++-+|+++++|+||..+.+-+| +.. .++++++.+|..+.||+|+|.||.|++...+.++.++.++...|+
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 566 899999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHh-hcCCccccccc
Q psy4772 205 QDAKNYHAWQHRQWVIN-LLDDDDRGVLE 232 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~-~l~~~~~~~~~ 232 (235)
.|-.|.|||.+|-+++. -.|-.++++++
T Consensus 176 ~Di~NNSAWN~Ryfvi~~~~~~~~~~~le 204 (318)
T KOG0530|consen 176 EDIRNNSAWNQRYFVITNTKGVISKAELE 204 (318)
T ss_pred HhhhccchhheeeEEEEeccCCccHHHHH
Confidence 99999999999999984 45655545543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=179.77 Aligned_cols=184 Identities=11% Similarity=0.060 Sum_probs=167.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC----CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF----TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~----~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+.+++|+.+|++|++++|+++.+|..+|.++..++.. ....+++|+..+.++++++|+++.+| ..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~-~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQAL-GLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHccC
Confidence 4578999999999999999999999999987755431 23457899999999999999999999 589999999999
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++|+..++++++++|+++.+|+++|.++...|+ +++|+..++++++++|.++.+++.++.++...|++++|+..++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 999999999999999999988888888888899999999999999
Q ss_pred HHhC-CCChHHhHHHHHHHhhcCCccccccc
Q psy4772 203 LAQD-AKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 203 i~ld-p~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+..+ |+++.++.++|.++..+|+.++|.-.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9885 88999999999999999998776543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=141.80 Aligned_cols=126 Identities=12% Similarity=0.120 Sum_probs=115.8
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..++++++++|++ + +.+|.++...|++++|+.+|.+++.++|.++.+|+.+|.++..+|+ +++|+.+|+++++++
T Consensus 14 ~~~~~al~~~p~~---~-~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---V-YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence 5788999999986 4 4678999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
|.++.+|+++|.++..+|++++|+..|++|+.++|+++..|.+++.++..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988654
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=171.89 Aligned_cols=165 Identities=19% Similarity=0.227 Sum_probs=154.8
Q ss_pred HHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCC
Q psy4772 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138 (235)
Q Consensus 59 aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P 138 (235)
.+..+|..|+.|--.|.|+..++++ +.||.+|++|+++||++.=+++ .+|-=+...+.++.|..+|.+||..+|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh-----~~Aik~f~RAiQldp~faYayT-LlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDH-----DTAIKCFKRAIQLDPRFAYAYT-LLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHH-----HHHHHHHHHhhccCCccchhhh-hcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3444888899999999999988876 4899999999999999999996 688888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 139 ~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
.++-||+.+|.+|.+.++ ++.|..+|++|+++||.|.....+.|.++.++|+.++|++.+++|+-+||+|+.+-++++.
T Consensus 487 rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEK-LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhhHHHHhhhhheeccch-hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 999999999999999996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccc
Q psy4772 219 VINLLDDDDRGV 230 (235)
Q Consensus 219 ~l~~l~~~~~~~ 230 (235)
++..+++..++-
T Consensus 566 il~~~~~~~eal 577 (638)
T KOG1126|consen 566 ILFSLGRYVEAL 577 (638)
T ss_pred HHHhhcchHHHH
Confidence 999999987764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=141.23 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=165.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+++++|+..++++++.+|.+..++..+|.++..+|+++ +|+..+.+++.++|.+..++ +.+|.++...|++++
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-----KAEDSFRRALTLNPNNGDVL-NNYGTFLCQQGKYEQ 117 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcccHHH
Confidence 478999999999999999999999999999999999875 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcC--CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAITMN--PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~l~--P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|+..+.+++... |....++..++.++...| ++++|...++++++.+|.+..+|..++.++...|++++|+..+++++
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALKAG-DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999864 667789999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.+.|.+...+...+.+....|+.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 197 QTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999998888888888776653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=166.62 Aligned_cols=173 Identities=12% Similarity=0.034 Sum_probs=159.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+++.+|+..+++|++++|+++.+|..+|.++...|+++ +|+..|+++++++|+++.+| +.+|.++...|++++|
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~P~~~~a~-~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI-----VGSLLFKQANLLSPISADIK-YYYGWNLFMAGQLEEA 391 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHH
Confidence 34799999999999999999999999999999999875 79999999999999999999 6899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+..++++++++|.++.++..++.++...|+ +++|+..++++++.+ |.++.++..+|.++..+|++++|...+.++...
T Consensus 392 i~~~~~Al~l~P~~~~~~~~~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 392 LQTINECLKLDPTRAAAGITKLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999999999999999888888888888884 999999999999885 889999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhcCCc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~ 226 (235)
.|.+..++..++.++..+|+.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~~ 491 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNSER 491 (553)
T ss_pred cchhHHHHHHHHHHHhccHHH
Confidence 999999988888777666643
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=156.35 Aligned_cols=171 Identities=21% Similarity=0.532 Sum_probs=149.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCC---CCH----HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQ---FTP----EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~---~~e----~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+++++...+.|..||+.+.+|+.|..++....- .++ +.+.+.+.+...+|+.||+.+.+|++ |.+++++.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h-R~w~L~~~p~ 124 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH-RKWVLQKNPH 124 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH-HHHHHHhCCC
Confidence 889999999999999999999888877765432 222 35678889999999999999999965 5599987764
Q ss_pred --cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCChHHhHHHHHHHHH------cCC
Q psy4772 123 --SERALALTADAITMNPANYTVWQYRREILKALNKD---LHQELKYIGEKIKENSKNYQVWRHRQIIVEW------MGE 191 (235)
Q Consensus 123 --~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~---~eeal~~~~~al~~~P~n~~aw~~r~~~l~~------l~~ 191 (235)
+...|..++++|+.||+++++|+||.++....... ..+++.++.++|..++.|++||++|..++.. .|+
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~ 204 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN 204 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc
Confidence 69999999999999999999999999999988754 6899999999999999999999999999974 221
Q ss_pred ------chHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 192 ------PDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 192 ------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
...+++...+|+..||.|.++|+|..|++.
T Consensus 205 ~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 205 FMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred cCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 468899999999999999999999999994
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=140.09 Aligned_cols=127 Identities=10% Similarity=-0.019 Sum_probs=119.4
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~ 132 (235)
...++++|+++|++ ++.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+|++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYS-----RAVIDFSWLVMAQPWSWRAH-IALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHhhHHHHHHHHHH
Confidence 35789999999996 778999999999885 79999999999999999999 6899999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 133 AITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+++++|+++.+|+++|.++..+|+ +++|+..|++++++.|.++..|.+++.+...+
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999995 99999999999999999999999999887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=151.58 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=129.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++|+++|+++.+|+++|.++..+|+++ +|++.|+++++++|++..+| +++|.++...|++++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~P~~~~a~-~~lg~~l~~~g~~~e 150 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD-----AAYEAFDSVLELDPTYNYAY-LNRGIALYYGGRYEL 150 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHH
Confidence 467888888888888888888888888888888888775 68888888888888888888 578888888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHH--H----HHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE--L----ALT 199 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~A--l----~~~ 199 (235)
|+..+++++.++|+++...... .+....+ ++++|+..+++++...+.. .|. .+.+...+|+..++ + +.+
T Consensus 151 A~~~~~~al~~~P~~~~~~~~~-~l~~~~~-~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 151 AQDDLLAFYQDDPNDPYRALWL-YLAESKL-DPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH-HHHHccC-CHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcC
Confidence 8888888888888887322211 1223334 4788888887766554333 233 34555556665433 2 222
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+.+++++|+...+|+++|.++..+|+.++|.-.|
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3345778888899999999999999998887655
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=154.47 Aligned_cols=150 Identities=21% Similarity=0.472 Sum_probs=132.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-----------ccHHHHHHHHHHHHcCCCChHHH
Q psy4772 76 VINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-----------KSERALALTADAITMNPANYTVW 144 (235)
Q Consensus 76 ~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-----------~~~eAl~~~~~al~l~P~~~~aw 144 (235)
.....|.|++ ++++...+++..||.++.+||++++.+...+- ..++.|.....+|+.||+++.+|
T Consensus 37 ~~r~~~~yd~----e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW 112 (421)
T KOG0529|consen 37 KKREAKEYDE----EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAW 112 (421)
T ss_pred HHHhccccch----HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHH
Confidence 3445677774 78999999999999999999999877766544 36888999999999999999999
Q ss_pred HHHHHHHHHhhHh-HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC----chHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 145 QYRREILKALNKD-LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE----PDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 145 ~~r~~~l~~l~~~-~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~----~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
++|.+++.+.... +..++.+|+++++.||+|+++|.+|.++.....+ ..+++++++++|..++.|+|||+||.++
T Consensus 113 ~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 113 HHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHH
Confidence 9999999987643 8999999999999999999999999999977665 4799999999999999999999999999
Q ss_pred H-hhcCCcccc
Q psy4772 220 I-NLLDDDDRG 229 (235)
Q Consensus 220 l-~~l~~~~~~ 229 (235)
+ .+.+++..|
T Consensus 193 L~~l~~~~~~g 203 (421)
T KOG0529|consen 193 LSTLHPKEADG 203 (421)
T ss_pred HHHhccccccC
Confidence 9 577777666
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-19 Score=153.70 Aligned_cols=170 Identities=13% Similarity=0.051 Sum_probs=130.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|+++|+++|++..+|.++|.++...|+++ +|++.|.++++++|+++... . ...+....++++
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~-----eA~~~~~~al~~~P~~~~~~-~-~~~l~~~~~~~~ 182 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE-----LAQDDLLAFYQDDPNDPYRA-L-WLYLAESKLDPK 182 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-H-HHHHHHccCCHH
Confidence 3589999999999999999999999999999999999875 79999999999999998321 1 113445677899
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHh-----HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKD-----LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~-----~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
+|+..+.+++...+.....| +.+...+|+. ++.+...++..++++|+...+|+++|.++..+|++++|+.+|
T Consensus 183 ~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 183 QAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHHHHhhCCccccHH---HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999988776644433333 4555556531 222223334455788889999999999999999999999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
++|+.++|.+.--+.+...-+..+.
T Consensus 260 ~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 260 KLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH
Confidence 9999999866665555444444443
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=153.51 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=161.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.-++|+.+|.+||++||+...+|...|-=+..++... .|++.|++|+.++|.++.|| |.+|..+..++...=|
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~-----AAi~sYRrAvdi~p~DyRAW-YGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTH-----AAIESYRRAVDINPRDYRAW-YGLGQAYEIMKMHFYA 417 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccH-----HHHHHHHHHHhcCchhHHHH-hhhhHHHHHhcchHHH
Confidence 34599999999999999999999999999999998774 79999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH--
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA-- 204 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~-- 204 (235)
|-+|++|+++.|.+.-.|..+|.||.++++ .++|+.||.+++....-+..+++.+|.++..+++.++|..+|++-++
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 89999999999999999999999999999999999999999999988
Q ss_pred -----hCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 205 -----QDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 205 -----ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.+|.-..+-.+++.-...++++.+++.
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 566656665556655567777766643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-18 Score=162.66 Aligned_cols=184 Identities=9% Similarity=-0.011 Sum_probs=107.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH----------------------------HHHHHHHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE----------------------------VIQREIDYCRD 97 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~----------------------------~~~~Al~~~~k 97 (235)
.|++++|+..++++++++|+++.+|..+|.++..+|+++++ ++++|+..+.+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46777777777777777777777777777777777765421 12233333333
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHH----HHHHHHHHHHhCC
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQ----ELKYIGEKIKENS 173 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~ee----al~~~~~al~~~P 173 (235)
++..+|.....+....|.++...|++++|+..+.++++++|+++.+++.+|.++..+|+ +++ |+..++++++++|
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHhhCC
Confidence 33333322221111223444455556666666666666666666666666666666663 443 5666666666666
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++..+|..+|.++...|++++|+..+++++.++|.++.++.+++.++..+|+.+++.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666666666666666666666666666666666665555554443
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=152.07 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=165.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcC----------------CCC-------------HHHHHHHHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTT----------------QFT-------------PEVIQREIDYCR 96 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~----------------~~~-------------e~~~~~Al~~~~ 96 (235)
..+|++|+..|+.+.+.+|...+-...-..+++-.. +|. ...+++|+.+|+
T Consensus 275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 358899999999999999987654444444444322 221 146899999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+||++||+...+|+ ..|-=+.++.....|+.+|.+|++++|.++-||+.+|.+|.-++ ...=|+-++++|++.-|.+.
T Consensus 355 RALkLNp~~~~aWT-LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~-Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 355 RALKLNPKYLSAWT-LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK-MHFYALYYFQKALELKPNDS 432 (559)
T ss_pred HHHhcCcchhHHHH-HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-chHHHHHHHHHHHhcCCCch
Confidence 99999999999996 79999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
-.|.-+|.++.++++.++|+.||++|+.....+.+++..+|.+..-|++.+++--.|
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988776554
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=155.64 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=151.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+-++-..+|++|..+||.|+++|+|||.+.+.+++|+ +|+..|+|+++++|++.-++ ..++.++.+.++.+++
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e-----~A~aDF~Kai~L~pe~~~~~-iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYE-----EAIADFQKAISLDPENAYAY-IQLCCALYRQHKIAES 447 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHH-----HHHHHHHHHhhcChhhhHHH-HHHHHHHHHHHHHHHH
Confidence 44577888888999999999999999999888887764 68889999999999999888 5888888888889999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHH-cCCchHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK------NYQVWRHRQIIVEW-MGEPDEELALT 199 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~-l~~~~~Al~~~ 199 (235)
...|+.+++..|.++.+++.-+.++...++ |+.|++.|+.+|++.|. |+..+.|++.++.+ .+++..|++++
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHH
Confidence 999999999999999999999999988884 89999999999999998 88888888877744 56788899999
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++||++||+-..|+..+|.+....|+.++|+
T Consensus 527 ~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 527 RKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999888888887778777765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=168.30 Aligned_cols=179 Identities=10% Similarity=0.040 Sum_probs=140.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|++++...|. ..+++..|.++...|++. +|+..|.++++++|.+.... ..++..+...|+++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~-----eA~~~l~qAL~l~P~~~~l~-~~La~~l~~~Gr~~ 593 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGA-----ARDRWLQQAEQRGLGDNALY-WWLHAQRYIPGQPE 593 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCccHHHH-HHHHHHHHhCCCHH
Confidence 356778888888887666554 455777787777777653 68888888888888876655 34444455568888
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+..+++++.++|+ ..+|+++|.++.++|+ +++|+.++++++.++|+++.+++++|.++...|++++|++.+++|++
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~-~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHN-VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888886 8888888888888884 88888888888888888888888888888888888888888888888
Q ss_pred hCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 205 QDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++|+++.+|.++|+++..+|+.++++-.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888887766543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=167.88 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=158.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+.+++++++.+|++...+..++..+..+|+++ +|+..|.++++++|+ +.+| +.+|.++...|+++
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~-----eAl~~~~~AL~l~P~-~~a~-~~LA~~l~~lG~~d 626 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE-----LALNDLTRSLNIAPS-ANAY-VARATIYRQRHNVP 626 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHhCCC-HHHH-HHHHHHHHHCCCHH
Confidence 3589999999999999999999988888777777778875 799999999999996 8899 68999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+.++.+++.++|+++.+++++|.++...| .+++|+..++++++++|.++.+|+++|+++..+|++++|+.++++|++
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 499999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHhh
Q psy4772 205 QDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~ 222 (235)
++|+++..-.-.|++...
T Consensus 706 l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQ 723 (987)
T ss_pred cCCCCchhhhhhhHHHHH
Confidence 999999998888877644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-18 Score=160.95 Aligned_cols=178 Identities=7% Similarity=-0.010 Sum_probs=105.0
Q ss_pred hcHHHHHHHHHhHHhcCCC-chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVR-NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~-~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
|++++|+..++++++.+|. +...+..++.++...|++ ++|+..+.++++++|+++.++ +.+|.++...|++++
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~-----~eA~~~~~~al~~~p~~~~~~-~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY-----QEAIQTGESALARGLDGAALR-RSLGLAYYQSGRSRE 264 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH-----HHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCchh
Confidence 3444444444444444432 222223334444444443 256666666666666666666 356666666666654
Q ss_pred ----HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 126 ----ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 126 ----Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
|+..++++++++|+++.++..+|.++...| ++++|+..++++++++|.++.++.+++.++...|++++|+..+++
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666666666666666666666666 366666666666666666666666666666666666666666666
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++..+|.+..++.+++.++..+|+.++|.-
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 666666666555555666666666555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=168.49 Aligned_cols=180 Identities=11% Similarity=0.076 Sum_probs=144.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch--h----------h-HH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP--W----------N-YL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a--w----------~-~~ 112 (235)
.|++++|+..|+++|+.+|+++.++..+|.++..+|+++ +|+..|.++++++|++... | . ..
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~-----eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA-----RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 478999999999999999999999999999999999875 6888888888888877642 2 0 12
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH------
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV------ 186 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l------ 186 (235)
+|.++...|++++|+..|++++.++|.+..++..+|.++...| ++++|+.+|+++++++|.+..++..++.++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 3666777788888888888888888888888888888888888 488888888888888888887776655443
Q ss_pred ------------------------------------HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 187 ------------------------------------EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 187 ------------------------------------~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
...|++++|+..+++++.++|+++.+++.++.++..+|+..+++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 24577788888888888888888888888888887777776654
Q ss_pred c
Q psy4772 231 L 231 (235)
Q Consensus 231 ~ 231 (235)
-
T Consensus 516 ~ 516 (1157)
T PRK11447 516 A 516 (1157)
T ss_pred H
Confidence 3
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-18 Score=150.82 Aligned_cols=173 Identities=17% Similarity=0.144 Sum_probs=162.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+..+|...|+++|+++|.+...+..||.++....+- ++-..+|++|..+||+++..+ |.||.+...++++++|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~-----~~~~~~F~~A~~ldp~n~dvY-yHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS-----EKMWKDFNKAEDLDPENPDVY-YHRGQMRFLLQQYEEA 413 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc-----HHHHHHHHHHHhcCCCCCchh-HhHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999887654 467899999999999999999 7899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+..|+++++++|++..++..++.++.+.++ ++++...|+.+++++|..+..++.-+-++...++++.|++.|++||++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred CC------ChHHhHHHHHHH-hhcCCc
Q psy4772 207 AK------NYHAWQHRQWVI-NLLDDD 226 (235)
Q Consensus 207 p~------n~~aw~~r~~~l-~~l~~~ 226 (235)
|+ ++..+.+++.++ +..++.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhH
Confidence 99 999999999887 443433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=159.12 Aligned_cols=178 Identities=10% Similarity=0.056 Sum_probs=155.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|++++...|++ ..+..++.++...|++. +|+..+.+++..+|++..++ +.+|.++...|++++
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~-----~A~~~~~~~l~~~~~~~~~~-~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTA-----EAVKTLEAWLKTHPNDAVLR-TALAELYLAQKDYDK 788 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCcCHHH
Confidence 467788888888888888877 67777888888887764 68888999999999999888 578899999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|++++..+|+++.++++.++++..+| + .+|+..+++++.+.|+++..|..+|.++...|++++|+..+++++++
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELK-D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988 4 77999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+|.++.++.+++.++...|+..++.-.
T Consensus 867 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 867 APEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999888988777543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-17 Score=155.85 Aligned_cols=178 Identities=14% Similarity=0.053 Sum_probs=154.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|+++.++..++.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 211 (899)
T TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD-----EARALIDEVLTADPGNVDAL-LLKGDLLLSLGNIEL 211 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHhcCCHHH
Confidence 478899999999999999999999999999999998774 68899999999999999998 578899999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++.++|.+..++..++.++...| .+++|...++++++..|.+..+++.++.+....|++++|+..+++++..
T Consensus 212 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 212 ALAAYRKAIALRPNNPAVLLALATILIEAG-EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998888 4888888888888888888888888888888888888888888888888
Q ss_pred CCCChHHhHHHHHHHhhcCCccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+|.+..++...|.++..+|+..++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred CCCchhHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888777777665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=143.03 Aligned_cols=186 Identities=10% Similarity=0.107 Sum_probs=116.6
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH----------------------------HHHHHHHHHH
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP----------------------------EVIQREIDYC 95 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e----------------------------~~~~~Al~~~ 95 (235)
..++++++|+..|++++..+|.++..+..++.+ ...+++.+ +.++++...+
T Consensus 55 ~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 55 WSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 456788888888888888888888888777777 45554432 2567777888
Q ss_pred HHHHHhC--CCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 96 RDKIQIA--PKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 96 ~kal~l~--p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
.++.... |.++..| ..+|.++...|+.++|+.+++++|+++|++..++...++++...|+ .+++...++...+..|
T Consensus 134 ~~~~~~~~~~~~~~~~-~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFW-LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHH-T---T-HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH-H
T ss_pred HHHHhccCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCc
Confidence 8877655 6778888 6799999999999999999999999999999999999999999995 8999999999999999
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
.++..|..+|.++..+|++++|+.++++++..+|+|+....+.+.++...|+..+|+-.
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999888754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-17 Score=162.49 Aligned_cols=180 Identities=11% Similarity=0.013 Sum_probs=146.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++++|+++.+++.+|.++..+|+++ +|+..+++++.++|.++.++ +.+|..+...++.++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~-----~A~~~l~~al~~~P~~~~~~-~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS-----QADALMRRLAQQKPNDPEQV-YAYGLYLSGSDRDRA 547 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCHHHH-HHHHHHHHhCCCHHH
Confidence 478999999999999999999999999999999999875 79999999999999999888 567666666666666
Q ss_pred HHHHHHHH----------------------------------------HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 126 ALALTADA----------------------------------------ITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 126 Al~~~~~a----------------------------------------l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
|+..++++ ++.+|.++.++..++.++.+.| ++++|+.+|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g-~~~~A~~~y 626 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG-DYAAARAAY 626 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC-CHHHHHHHH
Confidence 66655432 3457788888888888888888 478888888
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+++++++|+|+.+++.++.++...|++++|+..+++++...|.+..++..++.++..+|+..+|.-.
T Consensus 627 ~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 627 QRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888887777777665533
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=146.48 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=154.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+..+|.-+|+.|++.+|++++||-.+|++....++- ..||..+.++++++|++-.+. ..++..+.+.|.-.+|
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E-----~~ai~AL~rcl~LdP~NleaL-maLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENE-----QNAISALRRCLELDPTNLEAL-MALAVSYTNEGLQNQA 372 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccch-----HHHHHHHHHHHhcCCccHHHH-HHHHHHHhhhhhHHHH
Confidence 6689999999999999999999999999999987653 379999999999999999999 6788888887777888
Q ss_pred HHHHHHHHHcCC-------------------------------------------CChHHHHHHHHHHHHhhHhHHHHHH
Q psy4772 127 LALTADAITMNP-------------------------------------------ANYTVWQYRREILKALNKDLHQELK 163 (235)
Q Consensus 127 l~~~~~al~l~P-------------------------------------------~~~~aw~~r~~~l~~l~~~~eeal~ 163 (235)
+.++.+-|+-.| .++.+...+|.+|.-.+ .|++|+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~-efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG-EFDRAVD 451 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch-HHHHHHH
Confidence 877777766443 34444555565554445 5999999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 164 YIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 164 ~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
||+.||..+|.|+..|+.+|..+-.-.+.++|+..|.+|+.+-|....+++|+|..++-+|-..+|...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-16 Score=128.40 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=135.5
Q ss_pred hhccCCCCCCCCCCchhHhhhhh-----hhhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHH
Q psy4772 22 WKDLRPIPQDDGPTPVVAIAYSQ-----KCNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREID 93 (235)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~y~~-----~~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~ 93 (235)
|..+.+.++.+.........|.. ..+++++|+..++++++.+|.++ .+|+.+|.++...|+++ +|+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~-----~A~~ 91 (235)
T TIGR03302 17 CSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYA-----EAIA 91 (235)
T ss_pred ccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHH-----HHHH
Confidence 44555554444333333333332 23788999999999999999876 68899999999998874 7999
Q ss_pred HHHHHHHhCCCCCc---hhhHHHHHHHhcc--------cccHHHHHHHHHHHHcCCCChHHH-----------------H
Q psy4772 94 YCRDKIQIAPKNES---PWNYLRGAVVNAG--------EKSERALALTADAITMNPANYTVW-----------------Q 145 (235)
Q Consensus 94 ~~~kal~l~p~~~~---aw~~~~g~il~~~--------~~~~eAl~~~~~al~l~P~~~~aw-----------------~ 145 (235)
.++++++.+|+++. +| +.+|.++... |++++|+..+++++..+|++..++ .
T Consensus 92 ~~~~~l~~~p~~~~~~~a~-~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAY-YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred HHHHHHHHCcCCCchHHHH-HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887 57 5788888765 788999999999999999987664 2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCC---hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKN---YQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n---~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
..+.++...| ++.+|+..++++++..|++ +.+|+.+|.++..+|++++|.++++......|
T Consensus 171 ~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRG-AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcC-ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455666667 4788888888888887664 46888888888888888888887777766655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-16 Score=138.55 Aligned_cols=178 Identities=11% Similarity=-0.021 Sum_probs=128.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC----CchhhHHHHHHHhccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN----ESPWNYLRGAVVNAGE 121 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~----~~aw~~~~g~il~~~~ 121 (235)
.+++++|+..|.++++.+|+++.++..+|.++...|+++ +|+..+.+++...+.. ..++ ..+|.++...|
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~l~~~~~~~~~~~~~~-~~La~~~~~~g 121 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVD-----RAIRIHQNLLSRPDLTREQRLLAL-QELGQDYLKAG 121 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHH-----HHHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHCC
Confidence 477899999999999999999999999999999988875 5777777776643222 1345 35677777777
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-----HhHHHHHHHHHcCCchHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-----VWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-----aw~~r~~~l~~l~~~~~Al 196 (235)
++++|+..|+++++.+|.+..++..++.++...|+ +++|+..++++++.+|.+.. .+..++.++...|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777777777777777777773 77777777777777666532 4455666666777777777
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
..++++++.+|++..++..++.++...|+..+|.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777777777777766666655543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-16 Score=126.11 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=147.5
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+.+++++|.++...|+++ +|+..+.+++..+|.+..+| ..+|.++...|++++|+..+++++++.|.+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~-----~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLE-----VAKENLDKALEHDPDDYLAY-LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3688999999999999875 79999999999999999999 57999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhC--CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKEN--SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~--P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+++.++...| ++++|+..++++++.. |....+|..+|.++...|++++|...+++++..+|.+..+|..++.++...
T Consensus 104 ~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQG-KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcc-cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 9999999999 5999999999999854 677889999999999999999999999999999999999999999999888
Q ss_pred CCcccccc
Q psy4772 224 DDDDRGVL 231 (235)
Q Consensus 224 ~~~~~~~~ 231 (235)
|+.+++..
T Consensus 183 ~~~~~A~~ 190 (234)
T TIGR02521 183 GQYKDARA 190 (234)
T ss_pred CCHHHHHH
Confidence 88876653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=123.74 Aligned_cols=175 Identities=12% Similarity=0.048 Sum_probs=156.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
-|++..|..-+++||+.+|+++.+|.-++.++..+|+.+ .|-+.|.+|++++|++....| +-|+.+...|++++
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~-----~A~e~YrkAlsl~p~~GdVLN-NYG~FLC~qg~~~e 121 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND-----LADESYRKALSLAPNNGDVLN-NYGAFLCAQGRPEE 121 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh-----hHHHHHHHHHhcCCCccchhh-hhhHHHHhCCChHH
Confidence 378999999999999999999999999999999999875 688999999999999999996 79999999999999
Q ss_pred HHHHHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|...|++|+.. .|..+..|-|.|.|-.+.|+ ++.|.+.++++|+.+|+++.+...+......-|++..|..++++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999999984 68888899999999999995 8999999999999999999999999999999999999999999998
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~ 227 (235)
..-+-.+...---.-+-..+|+-+
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHH
Confidence 877655554333223335666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=135.25 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=136.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-----hhhHHHHHHHhcc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-----PWNYLRGAVVNAG 120 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-----aw~~~~g~il~~~ 120 (235)
.|++++|+..|+++++.+|.+..++..++.++...|+++ +|++.+.++++.+|.+.. .+ ..+|.++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~ 193 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ-----KAIDVAERLEKLGGDSLRVEIAHFY-CELAQQALAR 193 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHhcCCcchHHHHHHH-HHHHHHHHhC
Confidence 478888999999998888888888888888888888764 678888888887776643 33 3566777778
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-HHhHHHHHHHHHcCCchHHHHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-QVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
|++++|+..++++++.+|++..++..++.++...| ++++|+..++++++.+|.+. .++..++.++...|++++|+..+
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQG-DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888888888 47888888888888877763 46677777888888888888888
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++++..+|+...+ ..++.++...|+..+|.
T Consensus 273 ~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 273 RRALEEYPGADLL-LALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHHHhCCCchHH-HHHHHHHHHhCCHHHHH
Confidence 8888888876544 66777766666665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=127.63 Aligned_cols=165 Identities=9% Similarity=-0.054 Sum_probs=146.9
Q ss_pred hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcC
Q psy4772 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMN 137 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~ 137 (235)
.+++..++.++.+|..+...|+++ +|+..+.+++..+|.++ .+| +.+|.++...|++++|+..++++++.+
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~~~~~~p~~~~~~~a~-~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYT-----EAIKYFEALESRYPFSPYAEQAQ-LDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCchhHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 456778999999999999999885 79999999999999987 577 689999999999999999999999999
Q ss_pred CCChH---HHHHHHHHHHHh--------hHhHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHHHHHc
Q psy4772 138 PANYT---VWQYRREILKAL--------NKDLHQELKYIGEKIKENSKNYQVW-----------------RHRQIIVEWM 189 (235)
Q Consensus 138 P~~~~---aw~~r~~~l~~l--------~~~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~l~~l 189 (235)
|+++. +++.+|.++... + .+++|+..++++++.+|++..++ ..++.++...
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99887 799999999886 6 48999999999999999998664 3567778889
Q ss_pred CCchHHHHHHHHHHHhCCCC---hHHhHHHHHHHhhcCCccccccc
Q psy4772 190 GEPDEELALTAAILAQDAKN---YHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n---~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|++.+|+..+++++...|++ +.+|+.+|.++..+|+..++...
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999997764 58999999999999998877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-16 Score=132.08 Aligned_cols=162 Identities=12% Similarity=0.121 Sum_probs=129.9
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHh--hcCC-----CCH-HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVIN--HTTQ-----FTP-EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~--~~~~-----~~e-~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
.+-++++++.++.+.++....-....++.. ..++ ... +...+|.. . -..|.=+.+.
T Consensus 31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~---------------L-K~eGN~~m~~ 94 (304)
T KOG0553|consen 31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEILTPEEDKALAES---------------L-KNEGNKLMKN 94 (304)
T ss_pred HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccccChHhHHHHHHH---------------H-HHHHHHHHHh
Confidence 367788888888888777655444333322 2222 011 01111111 1 2357777788
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
++|++|+..|++||+++|.++..+-+|+.+|.+||. ++.|++.|+++|.+||....+|--+|.++..+|++++|++.|+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHhHHHHHHHhhcCCcc
Q psy4772 201 AILAQDAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 201 ~ai~ldp~n~~aw~~r~~~l~~l~~~~ 227 (235)
+||++||.|.+.|.++.++-+.++...
T Consensus 174 KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 174 KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=124.66 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHhhHh-HHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL-KALNKD-LHQELK 163 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l-~~l~~~-~eeal~ 163 (235)
...++++..+.++++.+|++..+| +.+|.++..+|++++|+.+|+++++++|+++.++...+.++ ...|+. .++|..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w-~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQW-ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 345688999999999999999999 68999999999999999999999999999999999999986 566631 489999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 164 YIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 164 ~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
.++++++++|++..+++.+|..+...|++++|+.+++++++++|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999887653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=114.77 Aligned_cols=128 Identities=12% Similarity=0.111 Sum_probs=110.0
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
+.+.+++.++|++..+. +.+|.++...|++++|+..+++++.++|.+..+|..+|.++..+|+ +++|+..++++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQI-YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHH-HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 45778888888888777 5788888888899999999999999999999999999999988884 899999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
|.++..|+++|.++...|++++|+..+++++.++|++...+..+..+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877766655543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=123.04 Aligned_cols=124 Identities=11% Similarity=0.122 Sum_probs=115.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH-hcccc--c
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVV-NAGEK--S 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il-~~~~~--~ 123 (235)
+..++++..++++|+.+|+++++|..+|.++...|+++ +|+..|.++++++|+++.++ ..+|.++ ...|+ +
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~-----~A~~a~~~Al~l~P~~~~~~-~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD-----NALLAYRQALQLRGENAELY-AALATVLYYQAGQHMT 126 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCCCc
Confidence 45689999999999999999999999999999999885 79999999999999999999 5888875 56676 6
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++|+..++++++++|++..+++.+|.++..+| ++++|+.+++++++.+|.+..
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g-~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQA-DYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999 599999999999999998753
|
|
| >COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=127.00 Aligned_cols=191 Identities=24% Similarity=0.389 Sum_probs=157.9
Q ss_pred CCCCCCchhHhhhhhh----hhcH----------HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcC---CCCHHHHHHHH
Q psy4772 30 QDDGPTPVVAIAYSQK----CNLF----------SDELSYIEGLISHDVRNNSAWTQRYFVINHTT---QFTPEVIQREI 92 (235)
Q Consensus 30 ~~~~~~~~~~~~y~~~----~~~~----------~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~---~~~e~~~~~Al 92 (235)
|.+..++.+.+.|+.. +|.+ ..|++.....|..+|....+|..|-.++.... +..+.-+.+.+
T Consensus 15 q~~l~~~l~ri~~~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldnel 94 (328)
T COG5536 15 QFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNEL 94 (328)
T ss_pred chhhhhHHHHHHhhhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHH
Confidence 6677888888887754 2332 68899999999999999999999999888722 12234567889
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcc--cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH------hhHhHHHHHHH
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAG--EKSERALALTADAITMNPANYTVWQYRREILKA------LNKDLHQELKY 164 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~--~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~------l~~~~eeal~~ 164 (235)
..+..+++-+|+++..|++++ .++..- ..++..+..+++.|..||+|++.|++|.+++.. .. .+..++++
T Consensus 95 d~~~~~lk~~PK~YqiW~HR~-~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S-~~k~e~ey 172 (328)
T COG5536 95 DFLDEALKDNPKNYQIWHHRQ-WMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFS-DLKHELEY 172 (328)
T ss_pred HHHHHHHhcCCchhhhhHHHH-HHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccch-hHHHHHHh
Confidence 999999999999999998765 887765 568999999999999999999999999999933 33 36777999
Q ss_pred HHHHHHhCCCChHHhHHHH---HHHHHcCC------chHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 165 IGEKIKENSKNYQVWRHRQ---IIVEWMGE------PDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~---~~l~~l~~------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
-..+|.-|+.|++||.+|- ......|+ +++++++...++..+|.|.++|.|.+++...
T Consensus 173 tt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 173 TTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 9999999999999999993 33334444 5789999999999999999999999998743
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=137.65 Aligned_cols=161 Identities=8% Similarity=-0.059 Sum_probs=146.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
.+++.-.....+--|.+++++.++|.+...+|+++ +|+..+..++++.|++..++ ..++.++.+.+++++|+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~-----ea~~~l~~~~~~~Pd~~~a~-~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSD-----EGLAVWRGIHQRFPDSSEAF-ILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHhhCCCcHHHH-HHHHHHHHHhccHHHHHHH
Confidence 44444444555567889999999999999999986 69999999999999999999 6899999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+++++..+|+++.+.+.++.++..+|+ +++|+.+|++++..+|++..+|..+|.++...|+.++|...|++|+.....-
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999988877
Q ss_pred hHHhHHHH
Q psy4772 210 YHAWQHRQ 217 (235)
Q Consensus 210 ~~aw~~r~ 217 (235)
...+.++.
T Consensus 222 ~~~~~~~~ 229 (694)
T PRK15179 222 ARKLTRRL 229 (694)
T ss_pred hHHHHHHH
Confidence 77765543
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=130.13 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=94.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+|+.|+.+|..||.++|.|...+.+|..++..+|+|+ +|+++-.+.+.++|.=+.+| .++|..+.-+|++++|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~-----~al~da~k~~~l~p~w~kgy-~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYE-----KALKDATKTRRLNPDWAKGY-SRKGAALFGLGDYEEA 89 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHH-----HHHHHHHHHHhcCCchhhHH-HHhHHHHHhcccHHHH
Confidence 78999999999999999999999999999999999885 79999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREIL 151 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l 151 (235)
+..|.+.|+.+|++......+..+.
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999887765
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=127.07 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=96.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++|.+|+..|.+||+++|.|+..|.+|+.++.++|+|+ .|+++|.++|.+||....+| .++|.++..+|++++|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~-----~AVkDce~Al~iDp~yskay-~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE-----DAVKDCESALSIDPHYSKAY-GRLGLAYLALGKYEEA 168 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH-----HHHHHHHHHHhcChHHHHHH-HHHHHHHHccCcHHHH
Confidence 57999999999999999999999999999999999986 69999999999999999999 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
++.|+++|+++|.+...+.+++++-.++++
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999888864
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=131.32 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=157.1
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC------------------------------------HHHHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT------------------------------------PEVIQREID 93 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~------------------------------------e~~~~~Al~ 93 (235)
..|+..+.++|+++|.|-+++-.+++.+...|.-. ...+..=.+
T Consensus 336 ~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 336 QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQE 415 (579)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHH
Confidence 78999999999999999999999999998887310 012333346
Q ss_pred HHHHHHHhCC--CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 94 YCRDKIQIAP--KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 94 ~~~kal~l~p--~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.|..+-..+| .++... ..+|.++...|.+++|++||+.||..+|.++..|+-+|-++-+-.+ .++|+..|.+|+++
T Consensus 416 ~fLeaa~~~~~~~DpdvQ-~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQ-SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQL 493 (579)
T ss_pred HHHHHHHhCCCCCChhHH-hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhc
Confidence 7888888888 788888 5899999999999999999999999999999999999999998885 89999999999999
Q ss_pred CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC----------ChHHhHHHHHHHhhcCCcc
Q psy4772 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK----------NYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 172 ~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~----------n~~aw~~r~~~l~~l~~~~ 227 (235)
.|...-+|+++|..+..+|.|.+|...+=.||.+.++ +...|.+++.++..+++.+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999999887 2358999999999998886
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=110.15 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=114.3
Q ss_pred HHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 54 SYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 54 ~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
+.++++|+.+|++..+.+.+|.++...|++. +|+..+.+++.++|.++.+| +.+|.++...|++++|+..++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD-----EALKLFQLLAAYDPYNSRYW-LGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999875 79999999999999999999 68999999999999999999999
Q ss_pred HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 134 l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
+.++|.++..++++|.++...| ++++|+..++++++.+|++...+-.+.
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALG-EPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999999999999999999 599999999999999999987665443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=126.05 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=118.8
Q ss_pred hhhcHHHHHHHHHhHHhcC--CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 45 KCNLFSDELSYIEGLISHD--VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~--P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
..++++++...++.+.... |.++..|..+|.++...|+. ++|+.++.++|.++|+++.+++ .++.++...|+
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~-----~~A~~~~~~al~~~P~~~~~~~-~l~~~li~~~~ 195 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP-----DKALRDYRKALELDPDDPDARN-ALAWLLIDMGD 195 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHH-TT-HHHHH-HHHHHHCTTCH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHCCC
Confidence 4578899999999988766 78999999999999999976 4899999999999999999994 78899999999
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
.+++...++......|.++..|...|.++..+|+ .++|+.+++++++.+|+|+....+.+.++...|+.++|.....++
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999888889999999999999999995 999999999999999999999999999999999999999999988
Q ss_pred HHh
Q psy4772 203 LAQ 205 (235)
Q Consensus 203 i~l 205 (235)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=137.01 Aligned_cols=176 Identities=14% Similarity=0.014 Sum_probs=147.4
Q ss_pred hhcHHHHHHHHHhHHhcCC---CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC----chhhHHHHHHHh
Q psy4772 46 CNLFSDELSYIEGLISHDV---RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE----SPWNYLRGAVVN 118 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P---~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~----~aw~~~~g~il~ 118 (235)
.+++++|+..|+++++..| .++..| .|.++..+|+++ +|+..|+++++.+|.++ ..+ ..++.++.
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e-----~A~~~l~~~l~~~p~~~~~~~~~~-~~L~~a~~ 321 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPE-----KAQSILTELFYHPETIADLSDEEL-ADLFYSLL 321 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcH-----HHHHHHHHHhhcCCCCCCCChHHH-HHHHHHHH
Confidence 3678999999999999864 444444 588888898875 79999999999988773 234 34566778
Q ss_pred cccccHHHHHHHHHHHHcCCCC---------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 119 AGEKSERALALTADAITMNPAN---------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~~---------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
..|++++|+..+++++..+|.. ..++..++.++...| ++++|+..+++++...|.+..+|..++
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8899999999999999988732 356778888999888 489999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 184 IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.++...|++++|++.+++++.++|++..+++.++.+...+|+.+.++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999888888876655
|
|
| >COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=125.56 Aligned_cols=147 Identities=22% Similarity=0.445 Sum_probs=124.3
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh-------cccccHHHHHHHHHHHHcCC
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN-------AGEKSERALALTADAITMNP 138 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~-------~~~~~~eAl~~~~~al~l~P 138 (235)
.......+.......++|+. +|++.....+..+|.+++.|||+...+.. .....+..+..+..+++-+|
T Consensus 30 ~y~~l~gr~~a~r~kkeys~----~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~P 105 (328)
T COG5536 30 SYHPLMGRFRAKRRKKEYSV----RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNP 105 (328)
T ss_pred ccchHHHHHHHHHhhhhcCH----HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCC
Confidence 34455566667777777874 79999999999999999999987744433 22346889999999999999
Q ss_pred CChHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH------HHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 139 ANYTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKNYQVWRHRQIIV------EWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 139 ~~~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l------~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++.|+||.+++... ...|..++...++.|..||+|++.|++|.+++ .....+..++++...+|+.|+.|++
T Consensus 106 K~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~S 185 (328)
T COG5536 106 KNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNS 185 (328)
T ss_pred chhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChH
Confidence 9999999999999887 12589999999999999999999999999999 3334467889999999999999999
Q ss_pred HhHHH
Q psy4772 212 AWQHR 216 (235)
Q Consensus 212 aw~~r 216 (235)
||.+|
T Consensus 186 aW~~r 190 (328)
T COG5536 186 AWHHR 190 (328)
T ss_pred HHHHH
Confidence 99999
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=135.90 Aligned_cols=141 Identities=11% Similarity=-0.018 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
+++.-.......-|.++.+. +++|.+....|++++|+..++.+++++|++..|+.+++.++.++++ +++|+..+++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l 147 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQ-VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYF 147 (694)
T ss_pred hhHHHHHHHHHhccccHHHH-HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHh
Confidence 45555666677889999999 7899999999999999999999999999999999999999999995 999999999999
Q ss_pred HhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
..+|+|+.+.+.+|.++..+|++++|+.+|++++..+|+++.+|..+|.+++.+|+.++|.--
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=135.86 Aligned_cols=167 Identities=10% Similarity=0.024 Sum_probs=150.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE--------------- 106 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~--------------- 106 (235)
.+++++|+..|+++++.+|.+ ...+..++.++...|+++ +|++.+.+++..+|...
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~-----eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP-----GALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH-----HHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 578999999999999999987 356777788888888764 79999999999988532
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+. ..+|.++...|++++|+..+++++...|.+..++..++.++...|+ +++|+..++++++++|++..+++.++.+.
T Consensus 360 ~a~-~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~-~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQ-SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW-PRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 244 4678899999999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
..+|++++|...++++++.+|+++.+....+-.
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999987775544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-14 Score=115.82 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=136.7
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.+...+|.-+...|++. .|...++|||+.+|+.+.+| ..++.+++..|..+-|-+.|.+|+.++|++..+++|-
T Consensus 36 ~arlqLal~YL~~gd~~-----~A~~nlekAL~~DPs~~~a~-~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 36 KARLQLALGYLQQGDYA-----QAKKNLEKALEHDPSYYLAH-LVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 46677788888888875 68899999999999999999 5899999999999999999999999999999999999
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHH--hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 148 REILKALNKDLHQELKYIGEKIK--ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~--~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
|+.+...|+ +++|...|++|+. -.|..+.+|-++|++-.+.|.++.|.+.+++++++||+++.+.--+......-|+
T Consensus 110 G~FLC~qg~-~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGR-PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCC-hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 999999994 9999999999998 5667778999999999999999999999999999999999987776666544444
Q ss_pred c
Q psy4772 226 D 226 (235)
Q Consensus 226 ~ 226 (235)
-
T Consensus 189 y 189 (250)
T COG3063 189 Y 189 (250)
T ss_pred c
Confidence 3
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=123.90 Aligned_cols=173 Identities=15% Similarity=0.163 Sum_probs=150.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH-----------------------------HHHHHHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-----------------------------VIQREIDYCR 96 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~-----------------------------~~~~Al~~~~ 96 (235)
.+.+.+|-.+|.++-.+||....+|..-|-.+...|+-+++ .++-|-.+|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 47789999999999999999999999999999888875531 3667889999
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHH----cCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAIT----MNPAN---YTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~----l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
.|+.+.|.++-..+ -.|.+....+.+.+|+..|++++. ..++. ...|+++|.++.++++ +++|+.+++++|
T Consensus 405 ~A~ai~P~Dplv~~-Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALAIAPSDPLVLH-ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKAL 482 (611)
T ss_pred HHHhcCCCcchhhh-hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHH
Confidence 99999999999994 789999999999999999999983 23333 3468899999999995 999999999999
Q ss_pred HhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
...|++..++...|+++..+|+++.|++.|.+|+.++|.|..+=.-++.++
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766666666
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=124.20 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=150.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH------------------------------------HHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP------------------------------------EVIQR 90 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e------------------------------------~~~~~ 90 (235)
.+|..|++.|+.+|.++ .+..-+.+++-++..+|.+.+ ..++.
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 36899999999999999 999999999999999887642 23444
Q ss_pred HHHHHHHHHH--------------------------hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH
Q psy4772 91 EIDYCRDKIQ--------------------------IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW 144 (235)
Q Consensus 91 Al~~~~kal~--------------------------l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw 144 (235)
++..|.++|. ++|.-...- ..+|......|+|.+|+..|+++|.++|+++..+
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~-r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEE-REKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence 4455555443 566665544 3578888999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 145 QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 145 ~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
.+|+.|+.+|+. +..|+.+++.+|+++|.+..+|..+|.++..+.+|++|++.|..+++.||++..+--..+-+++.
T Consensus 396 sNRAac~~kL~~-~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 396 SNRAACYLKLGE-YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999994 99999999999999999999999999999999999999999999999999999998888888754
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=123.38 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=169.6
Q ss_pred cccccchhhhhccCCCCCCCCCCchh-Hhhhhh-----hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH
Q psy4772 13 WVYYKNREEWKDLRPIPQDDGPTPVV-AIAYSQ-----KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE 86 (235)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~-----~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~ 86 (235)
++-++....+..++|+.+..-..|-+ ...+-. -++++.+|+...-..+++++.+.++++-||.+++..+..+
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~-- 220 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD-- 220 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH--
Confidence 34445566778888888776655643 333322 2488999999999999999999999999999999887654
Q ss_pred HHHHHHHHHHHHHHhCCCCCc------------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH----HHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNES------------PWNYLRGAVVNAGEKSERALALTADAITMNPANYT----VWQYRREI 150 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~------------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~----aw~~r~~~ 150 (235)
.|+..|+++|.++|.+.. .| -.+|.-..+.|++..|-++|..+|.++|++.. .+.+|+.+
T Consensus 221 ---ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~-k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 221 ---KAINHFQQALRLDPDHQKSKSASMMPKKLEVK-KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred ---HHHHHHhhhhccChhhhhHHhHhhhHHHHHHH-HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 799999999999999985 45 35777788899999999999999999999765 58899999
Q ss_pred HHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC--ChHHhHHHHHHHh
Q psy4772 151 LKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK--NYHAWQHRQWVIN 221 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~--n~~aw~~r~~~l~ 221 (235)
..+||+ ..+|+..|++++.+||....++..|+.++..++++++|.+.|++++.+..+ .-..|......|+
T Consensus 297 ~~rLgr-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 297 NIRLGR-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hcccCC-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 999995 999999999999999999999999999999999999999999999987655 6666655555553
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-13 Score=110.07 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=157.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+....|..+++..-...|+..-+--..|..+...|++. +|++.|+..|+-||.+..++ -++-.++..+|+.-+
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~-----~A~e~y~~lL~ddpt~~v~~-KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK-----EAIEYYESLLEDDPTDTVIR-KRKLAILKAQGKNLE 138 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh-----hHHHHHHHHhccCcchhHHH-HHHHHHHHHcCCcHH
Confidence 467799999999999999999999999999999999875 79999999999999999999 577778888999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC---chHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE---PDEELALTAAI 202 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~---~~~Al~~~~~a 202 (235)
|++....-++..|.+..||+..+.+|..++ +|+.|.-|+++++-+.|-|+-..-.++-++..+|- ++-+.++|.++
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 59999999999999999999999999988887774 67899999999
Q ss_pred HHhCCCChHHhHHHHHHHhhcC
Q psy4772 203 LAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 203 i~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+++.|.+..+|+..-.+.+.+-
T Consensus 218 lkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 218 LKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHhChHhHHHHHHHHHHHHHHH
Confidence 9999999999998766654443
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-14 Score=124.17 Aligned_cols=182 Identities=14% Similarity=0.179 Sum_probs=139.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----------------------------------------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP----------------------------------------- 85 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e----------------------------------------- 85 (235)
..|.+|+..|..||...|+++..|.+|+.+++..|+|++
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 468999999999999999999999999999999998753
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 86 ----------------------------------------EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 86 ----------------------------------------~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.++.+|+.....++++++.+..+. +.+|.++......+.
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al-~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL-YVRGLCLYYNDNADK 221 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH-HhcccccccccchHH
Confidence 012334444555666677777776 566777777777777
Q ss_pred HHHHHHHHHHcCCCChHH------------HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHHHc
Q psy4772 126 ALALTADAITMNPANYTV------------WQYRREILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVEWM 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~a------------w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~~l 189 (235)
++..|+++|+++|++..+ |..+|.-..+-| .+..|-++|..+|.++|.|. ..+.+|+.+..++
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G-~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG-NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc-chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc
Confidence 777777777777776653 444455555555 37888888999999998764 4688888899999
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|+..+|+..++.|+.+||....++.-|+.+...|++--+++
T Consensus 301 grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988998888777655444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=127.29 Aligned_cols=172 Identities=10% Similarity=0.004 Sum_probs=148.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHH--HHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLR--GAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~--g~il~~~~~~ 123 (235)
-|++..|+..|+++++.+|.++.+......++...|+++ +|+..+++++ +|.+..... .+ |.++...|++
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~-----~A~~~~eka~--~p~n~~~~~-llalA~ly~~~gdy 118 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ-----EVIDVYERYQ--SSMNISSRG-LASAARAYRNEKRW 118 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH-----HHHHHHHHhc--cCCCCCHHH-HHHHHHHHHHcCCH
Confidence 488999999999999999999755447777777888875 7999999999 666666552 45 6688899999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
++|++.|+++++++|+++.++..++.++..+++ .++|+..+++++..+|.+... ..++.++...++..+|++.+++++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q-~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGR-GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999998899999985 899999999999999997766 666777777888888999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~ 227 (235)
+++|.+..++..+-.++...|--+
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcH
Confidence 999999999998888887776553
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-13 Score=125.28 Aligned_cols=177 Identities=15% Similarity=0.205 Sum_probs=145.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..+..+|+++|.++.+|+.+|.|+..+|+. ++++.+.-.|--++|+++.-| ...+.....+|.+.+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~-----eK~l~~~llAAHL~p~d~e~W-~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDI-----EKALNFWLLAAHLNPKDYELW-KRLADLSEQLGNINQA 226 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccH-----HHHHHHHHHHHhcCCCChHHH-HHHHHHHHhcccHHHH
Confidence 7899999999999999999999999999999999964 466666666667777777777 4666666666777777
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH--------------------------------------------------
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK-------------------------------------------------- 156 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~-------------------------------------------------- 156 (235)
.-||.+||..+|.+......|..++.++|.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777776666666666666651
Q ss_pred --------------------------------------------------------------------------------
Q psy4772 157 -------------------------------------------------------------------------------- 156 (235)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (235)
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHhCCC-ChHHhHHHHHHHHHcCCch
Q psy4772 157 ------------------------------------------DLHQELKYIGEKIKENSK-NYQVWRHRQIIVEWMGEPD 193 (235)
Q Consensus 157 ------------------------------------------~~eeal~~~~~al~~~P~-n~~aw~~r~~~l~~l~~~~ 193 (235)
.+.+|+.++..++...+. |.-.|+.+|.++..+|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 367788888888887764 4569999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 194 EELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 194 ~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+|+++|++++.++|.|..+-..++.++..+|+..++
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999987654
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-13 Score=120.12 Aligned_cols=178 Identities=11% Similarity=0.109 Sum_probs=144.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+..+-...--+.....|+.+..|+..|.-+...|+++ +|-.+|.|+..+||.+..+| ...|..+...|..++|
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s-----eARry~SKat~lD~~fgpaW-l~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS-----EARRYFSKATTLDPTFGPAW-LAFGHSFAGEGEHDQA 365 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH-----HHHHHHHHHhhcCccccHHH-HHHhHHhhhcchHHHH
Confidence 44445555555667778888888888888888888876 68899999999999999999 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------------------------------
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY------------------------------ 176 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------------------------------ 176 (235)
+.+|.+|-++-|++.....+.|.=+...+ .++-|-.++..|+.+.|.++
T Consensus 366 maaY~tAarl~~G~hlP~LYlgmey~~t~-n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 366 MAAYFTAARLMPGCHLPSLYLGMEYMRTN-NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 99999998888888888888887777665 24444444444444444333
Q ss_pred -----------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 177 -----------QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 177 -----------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
..|+++|-++.+++++++|+.++++||.+.|++.+++...|++..++|+.++|+-
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 2488999999999999999999999999999999999999999999999887764
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-13 Score=114.32 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=126.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.+.+|+..|-.|+..+|+++.+++.||.++..+|+-. -|+.++.++|++.|++..|- ..||.++.++|.+++|
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk-----~al~Dl~rVlelKpDF~~AR-iQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSK-----AALQDLSRVLELKPDFMAAR-IQRGVVLLKQGELEQA 125 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCc-----cchhhHHHHHhcCccHHHHH-HHhchhhhhcccHHHH
Confidence 56788999999999999999999999999988888754 47777888888888877777 5777777777777777
Q ss_pred HHHHHHHHHcCCCCh-------------------------------------------------HHHHHHHHHHHHhhHh
Q psy4772 127 LALTADAITMNPANY-------------------------------------------------TVWQYRREILKALNKD 157 (235)
Q Consensus 127 l~~~~~al~l~P~~~-------------------------------------------------~aw~~r~~~l~~l~~~ 157 (235)
...|+.+|..+|++- ..+..|+.||..-| .
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~-e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG-E 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC-c
Confidence 777777777777433 22223444444444 2
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
...|+..++.+-++..+|..+.+..+.++...|+.+.++..++.-+.+||++-.++-+...+
T Consensus 205 ~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 56677777888888888888888888888888888888888888888888888887765544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-13 Score=118.69 Aligned_cols=111 Identities=10% Similarity=0.035 Sum_probs=92.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
..|......|++++|+.+|+++|+++|.++.+|.+|+.++..+| ++++|+.+++++++++|.+..+|+.+|.++..+|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45677777788888888888888888888888888888888888 48888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+++|+..+++++.++|++..+...++.+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888887776444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=114.02 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=129.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..+++++..+|++..++.. +..+...|.+.. ....+...+......+|....++ ..+|.++...|++++
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~-~~~a~~~~~~G~~~~ 132 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG-MRDHVARVLPLWAPENPDYWYLL-GMLAFGLEEAGQYDR 132 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc-CchhHHHHHhccCcCCCCcHHHH-HHHHHHHHHcCCHHH
Confidence 478999999999999999999999887 777777665532 12233343443334445554555 356789999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
|+..++++++++|++..+++.++.++...|+ +++|+.++++++...|.++ +.|.+++.++...|++++|+..+++
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999994 9999999999999987543 4677899999999999999999999
Q ss_pred HHHhCC
Q psy4772 202 ILAQDA 207 (235)
Q Consensus 202 ai~ldp 207 (235)
++...|
T Consensus 212 ~~~~~~ 217 (355)
T cd05804 212 HIAPSA 217 (355)
T ss_pred Hhcccc
Confidence 988777
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=113.25 Aligned_cols=180 Identities=8% Similarity=-0.018 Sum_probs=148.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc--
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-- 120 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-- 120 (235)
.++.+++...+.++++..|.+. +..+.++.++...|+++ +|+..+.+++..+|++..++. . +..+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~-----~A~~~~~~~l~~~P~~~~a~~-~-~~~~~~~~~ 91 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLP-----KALALLEQLLDDYPRDLLALK-L-HLGAFGLGD 91 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCcHHHHH-H-hHHHHHhcc
Confidence 4677888999999999988774 56888899999998874 799999999999999998884 3 4444443
Q ss_pred --cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 121 --EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 121 --~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
+....+..........+|....++..++.++...| ++++|+..++++++++|++..++..++.++...|++++|+.+
T Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 92 FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555555678888888889999999999 499999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCh----HHhHHHHHHHhhcCCcccccccc
Q psy4772 199 TAAILAQDAKNY----HAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 199 ~~~ai~ldp~n~----~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+++++...|.+. +.|.+++.++...|+.+++.-.|
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999987543 45678888888899887775443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=118.62 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=138.0
Q ss_pred CCchhHhhhh-hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--
Q psy4772 34 PTPVVAIAYS-QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN-- 110 (235)
Q Consensus 34 ~~~~~~~~y~-~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~-- 110 (235)
..+...++|. -.+++.+.|+..|.+||+++|.++.++..+|.+.....+ ...+..++..+.++...+|.+|.+.+
T Consensus 199 aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 199 ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 3345566666 346788999999999999999999999999988877643 34577899999999999999995552
Q ss_pred ----------------------------------HHHHHHHhcccccHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHhh
Q psy4772 111 ----------------------------------YLRGAVVNAGEKSERALALTADAITMNPAN-YTVWQYRREILKALN 155 (235)
Q Consensus 111 ----------------------------------~~~g~il~~~~~~~eAl~~~~~al~l~P~~-~~aw~~r~~~l~~l~ 155 (235)
|.+|.+++.+|++++|..+|.+++..+|++ .-+++..|.++...|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 345555666677777777777777777777 666677777777777
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC----CchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 156 KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG----EPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 156 ~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~----~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.++.+..|++++++..|+++.+..-+|.++...+ ..++|.....++++..|.+..+|..++.++
T Consensus 357 -dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 357 -DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred -hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4777777777777777777777777777776654 356777777777777777777777777766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=102.78 Aligned_cols=173 Identities=10% Similarity=0.117 Sum_probs=159.0
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
..+...+=+....+|++.++ .+....+...|+-+ .++....+++--+|.+.... ...|..+...|++.+|+..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~-----~~l~~~~~~~~~~~~d~~ll-~~~gk~~~~~g~~~~A~~~ 122 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDAD-----SSLAVLQKSAIAYPKDRELL-AAQGKNQIRNGNFGEAVSV 122 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccccc-----chHHHHhhhhccCcccHHHH-HHHHHHHHHhcchHHHHHH
Confidence 55777777888899999999 99999999998755 46677788888899998887 4688999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+.++.+++|.+..+|+-+|.+|.++|+ +++|...|.+++++.|.++.+.+++|..+.-.|+++.|..++.++...-+.+
T Consensus 123 ~rkA~~l~p~d~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 123 LRKAARLAPTDWEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred HHHHhccCCCChhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHhhcCCccccc
Q psy4772 210 YHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 210 ~~aw~~r~~~l~~l~~~~~~~ 230 (235)
...-.++..++..+|+...++
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999987664
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-12 Score=120.68 Aligned_cols=175 Identities=11% Similarity=0.035 Sum_probs=155.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC------------------------------------------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT------------------------------------------ 84 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~------------------------------------------ 84 (235)
+...+|...+..++..+-+++.+|...|.++....+..
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 45688888999999999999999999996655443211
Q ss_pred -HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHH
Q psy4772 85 -PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELK 163 (235)
Q Consensus 85 -e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~ 163 (235)
....++|++.|.++|+.+|.|-.|-| ..|.|+...|++.+|+..|.++.+--.+++++|.+.|.|+..+|+ |-.|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAAN-GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q-y~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAAN-GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ-YRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhcc-chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH-HHHHHH
Confidence 13578999999999999999999995 899999999999999999999999888999999999999999995 999999
Q ss_pred HHHHHHHhCC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 164 YIGEKIKENS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 164 ~~~~al~~~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
.|+.+++.+- ++++....++.++...|.+.+|.+...+|+.+.|.|++.-+|++.++..+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999998654 67889999999999999999999999999999999999999999998544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=101.28 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=57.1
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|..|..+...|++++|...|+.++.++|.++..|+++|.|+..+|+ +++|+.+|.+++.++|+++.+.+|.|.++..+|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 4555555566666666666666666666666666666666666653 666666666666666666666666666666666
Q ss_pred CchHHHHHHHHHHHh
Q psy4772 191 EPDEELALTAAILAQ 205 (235)
Q Consensus 191 ~~~~Al~~~~~ai~l 205 (235)
+.+.|.++|+.||..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=114.15 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=55.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++|++|+..|++||+++|.++.+|+++|.++..+|+++ +|+..+.+++.++|.++.+| +++|.++..+|++++|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~-----eAl~~~~~Al~l~P~~~~a~-~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT-----EAVADANKAIELDPSLAKAY-LRKGTACMKLEEYQTA 89 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCcCCHHHH-HHHHHHHHHhCCHHHH
Confidence 34555555555555555555555555555555555443 45555555555555555555 3555555555555555
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKAL 154 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l 154 (235)
+..++++++++|++..+...++.|...+
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=99.20 Aligned_cols=111 Identities=10% Similarity=0.040 Sum_probs=104.9
Q ss_pred HHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 55 YIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 55 ~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
.+..+..+. |+.-+..+..|..++..|+++ +|...|..+..++|.++..| +++|.|++.+|++++|+.+|.++
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~-----~A~~~f~~L~~~Dp~~~~y~-~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFA-----GAARLFQLLTIYDAWSFDYW-FRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778888 999999999999999999985 79999999999999999999 89999999999999999999999
Q ss_pred HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 134 l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
+.++|+++.+.+|.|.|+..+|+ .+.|.++|+.+|..-
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~-~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDN-VCYAIKALKAVVRIC 133 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 99999999999999999999994 899999999999865
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=111.66 Aligned_cols=182 Identities=10% Similarity=-0.034 Sum_probs=151.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH----------------H------------H-----HHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE----------------V------------I-----QREI 92 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~----------------~------------~-----~~Al 92 (235)
.++++.|++.++.+++..|+++.++...+.++...|++++. . + +++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 47899999999999999999999999999999999986520 0 1 1122
Q ss_pred HHHHHHHHhCC----CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH--HHHHHHHHHhhHhHHHHHHHHH
Q psy4772 93 DYCRDKIQIAP----KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW--QYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 93 ~~~~kal~l~p----~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw--~~r~~~l~~l~~~~eeal~~~~ 166 (235)
+.+.++....| +++..+ ...+..+...|++++|++..+++++..|++.... ..+.......+ +...++..++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~-~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~-~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALK-IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE-DNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHH-HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC-ChHHHHHHHH
Confidence 36667777788 478888 5788999999999999999999999999998653 33333333344 4788999999
Q ss_pred HHHHhCCCCh--HHhHHHHHHHHHcCCchHHHHHHH--HHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 167 EKIKENSKNY--QVWRHRQIIVEWMGEPDEELALTA--AILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 167 ~al~~~P~n~--~aw~~r~~~l~~l~~~~~Al~~~~--~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++++.+|+++ .....+|+++.+.|++++|.++++ .++..+|++..+. +++-++..+|+.+++.
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAA 390 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHH
Confidence 9999999999 889999999999999999999999 6888999888754 9999999999987764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=109.78 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=141.2
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|..++-++.+|.-+...|+++ .|+..|.+|+..||+++.+. |+||.++..+|+..-|+..++++|++.|++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~s-----DALt~yHaAve~dp~~Y~ai-frRaT~yLAmGksk~al~Dl~rVlelKpDF~ 106 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLS-----DALTHYHAAVEGDPNNYQAI-FRRATVYLAMGKSKAALQDLSRVLELKPDFM 106 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHcCCchhHHHH-HHHHHHHhhhcCCccchhhHHHHHhcCccHH
Confidence 46788889999999999999987 69999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-------------HhHHHHHHH--HHcCCchHHHHHHHHHHHhC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-------------VWRHRQIIV--EWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-------------aw~~r~~~l--~~l~~~~~Al~~~~~ai~ld 206 (235)
.|-..||.++.+.|+ +++|...|+.+|+-+|++-. -|..+..+. ...|+...++++++..|++-
T Consensus 107 ~ARiQRg~vllK~Ge-le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGE-LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHhchhhhhccc-HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 999999999999995 99999999999999996543 355555554 34578999999999999999
Q ss_pred CCChHHhHHHHHHHhhcCCc
Q psy4772 207 AKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~ 226 (235)
|=+++.+.+|+.|+-.-|+-
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred cchhHHHHHHHHHHHhcCcH
Confidence 99999999999998655543
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-11 Score=111.45 Aligned_cols=193 Identities=15% Similarity=0.214 Sum_probs=150.9
Q ss_pred hhHhhhhhh-hhcHHHHHHHHHhHHhc-CCCchhHhhhHHHHHhhcCCCCHH----------------------------
Q psy4772 37 VVAIAYSQK-CNLFSDELSYIEGLISH-DVRNNSAWTQRYFVINHTTQFTPE---------------------------- 86 (235)
Q Consensus 37 ~~~~~y~~~-~~~~~~Al~~~~~aL~~-~P~~~~a~~~~g~~l~~~~~~~e~---------------------------- 86 (235)
++..++-.+ .++.+.|+....++|++ ..+.+.+|+.++.|+...+++.++
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 444444433 36789999999999999 556789999999999999987631
Q ss_pred -HHHHHHHHHHHHHHhCC--------------------------------------------------------------
Q psy4772 87 -VIQREIDYCRDKIQIAP-------------------------------------------------------------- 103 (235)
Q Consensus 87 -~~~~Al~~~~kal~l~p-------------------------------------------------------------- 103 (235)
+.++|+..|...|.+-.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 12223322222222111
Q ss_pred CCC-------chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 104 KNE-------SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 104 ~~~-------~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
... ..| ...+......+..++|.-|..++-.++|-++..|+-+|.++...|+ +++|...|..++.+||+++
T Consensus 641 ~~~~~~~~~~~lw-llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~-~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 641 GPDSLWYLLQKLW-LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ-LEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCchHHHHHHHH-HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh-hHHHHHHHHHHHhcCCCCc
Confidence 011 123 2455556666778899999999999999999999999999999995 9999999999999999999
Q ss_pred HHhHHHHHHHHHcCCchHHHH--HHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELA--LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~--~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.+...+|.++...|+..-|-. +..-|+++||.|..+|+++|.+++..|+...|..
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999999998665555 9999999999999999999999999999866543
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=116.37 Aligned_cols=131 Identities=17% Similarity=0.287 Sum_probs=122.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRRE 149 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~ 149 (235)
+...+..++-.|++ ++|+..+..+|+.+|.++.+| +.+|.|+..+|+.++++.+.-.|.-++|++..-|...+.
T Consensus 142 ll~eAN~lfarg~~-----eeA~~i~~EvIkqdp~~~~ay-~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 142 LLGEANNLFARGDL-----EEAEEILMEVIKQDPRNPIAY-YTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHhCCH-----HHHHHHHHHHHHhCccchhhH-HHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34444555556765 589999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 150 ILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 150 ~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
...++| .+.+|.-||.+||+.+|.|......|+.++.+.|+...|++.+.+++.++|
T Consensus 216 ls~~~~-~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 216 LSEQLG-NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHhcc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999 699999999999999999999999999999999999999999999999999
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-12 Score=119.44 Aligned_cols=173 Identities=11% Similarity=0.055 Sum_probs=156.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+-..|+..|-++|+++|..+-+|..+|.++..-- +..+|-.+|.||+.+||.++++|- .....+.+...+++|
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~-----Dm~RA~kCf~KAFeLDatdaeaaa-a~adtyae~~~we~a 545 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD-----DMKRAKKCFDKAFELDATDAEAAA-ASADTYAEESTWEEA 545 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCchhhhhHH-HHHHHhhccccHHHH
Confidence 45689999999999999999999999999998753 346899999999999999999995 678999999999999
Q ss_pred HHHHHHHHHcCCCChH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYT--VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 127 l~~~~~al~l~P~~~~--aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
....-.+-+..|.... .|.+||-.+.+-+ .+-.++..++.+++.+|+++.+|..+|-++...|++.-|+..|++|..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 9998888888887654 6778888888888 489999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHhhcCCc
Q psy4772 205 QDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
++|.+-.+-+..+.....+|+-
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhH
Confidence 9999999988888887777764
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=102.22 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=140.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC-----------------------------HHHHHHHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT-----------------------------PEVIQREIDYCRD 97 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~-----------------------------e~~~~~Al~~~~k 97 (235)
|++++|+--|++++.+||.+..+.-.-|.++-..|+++ +.++..|+.+-.|
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 67899999999999999999988888888888877654 2578899999999
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH---------------------
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK--------------------- 156 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~--------------------- 156 (235)
+|+.+|++..++ ..+|.++..+|+.++|+-.|..|..+.|..-..|..+-.+|...++
T Consensus 326 ~I~~~~r~~~al-ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 326 CIDSEPRNHEAL-ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred HhccCcccchHH-HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence 999999999999 6899999999999999999999999999888887776666666552
Q ss_pred --------------hHHHHHHHHHHHHHhCCCChHH---------------------------------hHHHHHHHHHc
Q psy4772 157 --------------DLHQELKYIGEKIKENSKNYQV---------------------------------WRHRQIIVEWM 189 (235)
Q Consensus 157 --------------~~eeal~~~~~al~~~P~n~~a---------------------------------w~~r~~~l~~l 189 (235)
.-|+|..+++++++++|....| ++++|.++...
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 1356677777777777755544 44455555555
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+.+++|++.|..|+.+||+|..+.-.+..+-+.+.
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 55789999999999999999988776665544443
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=113.02 Aligned_cols=137 Identities=16% Similarity=0.223 Sum_probs=122.7
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
..|...+.+....+..+ +|..+...+-.+.|-.+..| +.+|.++...|..+||..+|..++.+||+++.+..-+
T Consensus 651 ~lwllaa~~~~~~~~~~-----~a~~CL~Ea~~~~~l~~~~~-~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDD-----EARSCLLEASKIDPLSASVY-YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHhcCCch-----HHHHHHHHHHhcchhhHHHH-HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45667777777776654 57778889999999999999 6899999999999999999999999999999999999
Q ss_pred HHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 148 REILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 148 ~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
|.++.++|. ...+...++..+++++|.|+.+|+++|-++.++|+...|-+||+.|+.+++.++
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999984 244555599999999999999999999999999999999999999999999886
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=97.30 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=125.7
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
+..|.+++|+++|+..|+-||.+..++-.+-.++..+|+.. +||+..++-+...|.+.++| ..++.++...|.+
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-----~aIk~ln~YL~~F~~D~EAW-~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-----EAIKELNEYLDKFMNDQEAW-HELAEIYLSEGDF 170 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHhcCcHHHH-HHHHHHHHhHhHH
Confidence 45689999999999999999999999998888888999875 69999999999999999999 5799999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNK--DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+.|.-|++.++-++|-++..+...+.++.-+|. +++-+.++|.++++++|+|..+|+....+-..
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999888763 46789999999999999999999987655433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-10 Score=102.06 Aligned_cols=158 Identities=13% Similarity=0.099 Sum_probs=141.2
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|....++|.++...+..|+++ +|+..++..+...|+|+..| -.+|.++.+.++..+|++.+++++.++|..+
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d-----~A~~~l~~L~~~~P~N~~~~-~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYD-----EALKLLQPLIAAQPDNPYYL-ELAGDILLEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccc-----hHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence 34899999999999999999987 68999999999999999999 4789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
..+.++|.+|.++|+ ..+|+..+++.+..+|.++..|..++.++..+|+-.++...+.....+.-+-..+......+.+
T Consensus 375 ~l~~~~a~all~~g~-~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 375 LLQLNLAQALLKGGK-PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999995 8999999999999999999999999999999999877777777777777777666666666665
Q ss_pred hcCCc
Q psy4772 222 LLDDD 226 (235)
Q Consensus 222 ~l~~~ 226 (235)
.++..
T Consensus 454 ~~~~~ 458 (484)
T COG4783 454 QVKLG 458 (484)
T ss_pred hccCC
Confidence 55444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=105.41 Aligned_cols=155 Identities=7% Similarity=0.019 Sum_probs=135.9
Q ss_pred cHHHHHHHHHhHH---hcCCCchhHhhhHHHHHhhc---CCC-CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 48 LFSDELSYIEGLI---SHDVRNNSAWTQRYFVINHT---TQF-TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 48 ~~~~Al~~~~~aL---~~~P~~~~a~~~~g~~l~~~---~~~-~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
..+.|+.+|.+|+ .++|.++.+|-.+++|.... |-. .+....+|+..-.++++++|.++.+. ...|.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~-~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKIL-AIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhh
Confidence 4589999999999 99999999999999998865 222 35677889999999999999999999 5899999999
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH-HHHcCCchHHHHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII-VEWMGEPDEELALT 199 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~-l~~l~~~~~Al~~~ 199 (235)
++++.|+..|++|+.++|+++.+|+.+|+++.--|+ .++|+..++++++++|.-..+=.-+-++ .+--...++++.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 999999999999999999999999999999999995 8999999999999999988887777777 56666678888777
Q ss_pred HHHHH
Q psy4772 200 AAILA 204 (235)
Q Consensus 200 ~~ai~ 204 (235)
-+-.+
T Consensus 431 ~~~~~ 435 (458)
T PRK11906 431 YKETE 435 (458)
T ss_pred hhccc
Confidence 55443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.2e-11 Score=114.58 Aligned_cols=172 Identities=7% Similarity=0.002 Sum_probs=142.1
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
...+.++--.+-+.|..+...+..+++..+.|+++ .|+..|.++++.+|.++.+. +-...++...|+.++|+..
T Consensus 17 ~~~~~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~-----~Al~~L~qaL~~~P~~~~av-~dll~l~~~~G~~~~A~~~ 90 (822)
T PRK14574 17 MTLLALFISGFVVNPAMADTQYDSLIIRARAGDTA-----PVLDYLQEESKAGPLQSGQV-DDWLQIAGWAGRDQEVIDV 90 (822)
T ss_pred HHHHHHHHcccccCccchhHHHHHHHHHHhCCCHH-----HHHHHHHHHHhhCccchhhH-HHHHHHHHHcCCcHHHHHH
Confidence 45566666677889999999999999999999985 79999999999999997554 2455677778999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+++++.-.|..+.+....+.++...| ++++|+..|+++++++|+|+.++..++.++...++.++|++.+++++..+|.+
T Consensus 91 ~eka~~p~n~~~~~llalA~ly~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 91 YERYQSSMNISSRGLASAARAYRNEK-RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 99999444444444444477999999 59999999999999999999999999999999999999999999999999996
Q ss_pred hHHhHHHHHHHhhcCCcccc
Q psy4772 210 YHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 210 ~~aw~~r~~~l~~l~~~~~~ 229 (235)
... ..++++...+++..++
T Consensus 170 ~~~-l~layL~~~~~~~~~A 188 (822)
T PRK14574 170 QNY-MTLSYLNRATDRNYDA 188 (822)
T ss_pred HHH-HHHHHHHHhcchHHHH
Confidence 665 5556655444554333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-11 Score=82.13 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=78.8
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.+|.++...|++++|+..+++++...|.+..+|..++.++...++ +++|+.+++++++..|.+..+|..++.++...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4677777778888888888888888888888888888888888874 788888888888888888888888888888888
Q ss_pred CchHHHHHHHHHHHhCCC
Q psy4772 191 EPDEELALTAAILAQDAK 208 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~ 208 (235)
++++|...+.+++..+|.
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 888888888888877763
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=105.19 Aligned_cols=177 Identities=10% Similarity=0.001 Sum_probs=153.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
......|+..+..-|...|.+...+...+.|...+++++ +|++.|+.+++++|.|.++.. ..|.-+.-.++.+-
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~-----~a~~lYk~vlk~~~~nvEaiA-cia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE-----DALQLYKLVLKLHPINVEAIA-CIAVGYFYDNNPEM 342 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH-----HHHHHHHHHHhcCCccceeee-eeeeccccCCChHH
Confidence 456789999999999999999999999999999988875 689999999999999999883 57777888888999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC---CChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS---KNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P---~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
|+.+|.++|.+--.+++.+.+.|.|...-++ ++-++.++++++..-. .-...|+++|.+.-..|++.-|-.+|+-+
T Consensus 343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999998885 8999999999887543 34568999999999999999999999999
Q ss_pred HHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 203 LAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 203 i~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+--||+|..+++|++.+-.--|+-..+
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHH
Confidence 999999999999999887666654433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-11 Score=94.53 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=65.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
+..|.++...|++++|+..+.+++.+.|+. +.+|+++|.++..+|+ +++|+.+++++++++|.+..+|.+++.++.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 345555555666666666666666555442 2355666666666663 566666666666666666666666666555
Q ss_pred -------HcCCc-------hHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 188 -------WMGEP-------DEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 188 -------~l~~~-------~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.+|++ .+|+..+++++..+|.+.. ..+..+..+|+
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~ 166 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGR 166 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcC
Confidence 44443 4677777888888887662 33444444444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-11 Score=96.20 Aligned_cols=134 Identities=10% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCC
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPA 139 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~ 139 (235)
+|..+.+++++|.++...|+++ +|+..|.+++.+.|+.. .+| +.+|.++...|++++|+..+.+++.++|+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYA-----EALENYEEALKLEEDPNDRSYIL-YNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHhhccchHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3355666777777777777664 67777777777766543 356 46777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+..++..+|.++..+++ ...+...++.++. .+.+|++++++++.++|++. .-.+..
T Consensus 105 ~~~~~~~lg~~~~~~g~-~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~---~~~~~~ 160 (172)
T PRK02603 105 QPSALNNIAVIYHKRGE-KAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY---IEAQNW 160 (172)
T ss_pred cHHHHHHHHHHHHHcCC-hHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH---HHHHHH
Confidence 77777777777777763 4555554444432 25788889999999999882 233444
Q ss_pred HhhcCCc
Q psy4772 220 INLLDDD 226 (235)
Q Consensus 220 l~~l~~~ 226 (235)
+...|+.
T Consensus 161 ~~~~~~~ 167 (172)
T PRK02603 161 LKTTGRS 167 (172)
T ss_pred HHhcCcc
Confidence 4445544
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-11 Score=104.98 Aligned_cols=176 Identities=9% Similarity=0.048 Sum_probs=140.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|.++|..||.-+.+..+++++.|.....+|+.+ +|+++|-|+..+--++.... +.++.|+..++....|
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld-----eald~f~klh~il~nn~evl-~qianiye~led~aqa 577 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD-----EALDCFLKLHAILLNNAEVL-VQIANIYELLEDPAQA 577 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH-----HHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhCHHHH
Confidence 67788888888888888888888888888877777764 67788877777777777777 5777777778888888
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH---------------------------------hHHHHHHHHHHHHHhCC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK---------------------------------DLHQELKYIGEKIKENS 173 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~---------------------------------~~eeal~~~~~al~~~P 173 (235)
++.+.++..+-|.++.++..++.+|.+-|. .+++++.+++++--+.|
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 888888888888888888888887776651 36889999999988988
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
....=-...+.++.+.|+|++|++.|+..-..-|.|..+.-++--+.--||-.+.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~ 712 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDA 712 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhH
Confidence 8766556677888999999999999999999999999998887777766666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=82.55 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-CchHHHHHHHHHHHhCC
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELALTAAILAQDA 207 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-~~~~Al~~~~~ai~ldp 207 (235)
++.+|+.+|.++...++ +++|+.+|+++|+++|+++.+|+++|.++..+| ++.+|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555555666655553 566666666666666666666666666665555 45566666666665555
|
... |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=103.85 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=120.9
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAW-TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~-~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
...|+++.|..++.++.+.+|++..+. ...+.+....|+++ +|+..++++++.+|+++.+. ...+.++...|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~-----~Al~~l~~~~~~~P~~~~al-~ll~~~~~~~gd 202 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENH-----AARHGVDKLLEVAPRHPEVL-RLAEQAYIRTGA 202 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHh
Confidence 334566666666666666666664333 23355555666553 56666666666666666666 345566666666
Q ss_pred cHHHHHHHHHHHHcCCC------------------------------------------ChHHHHHHHHHHHHhhH----
Q psy4772 123 SERALALTADAITMNPA------------------------------------------NYTVWQYRREILKALNK---- 156 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~------------------------------------------~~~aw~~r~~~l~~l~~---- 156 (235)
+++|+..+.++.+..+. ++.++...+..+...|.
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 66666544444433322 22222222222222221
Q ss_pred --------------------------hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 157 --------------------------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 157 --------------------------~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+.++++..+++.++.+|+|+.....+|.++...+++++|.+.++++++++|++.
T Consensus 283 ~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 283 QQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 467899999999999999999999999999999999999999999999999976
Q ss_pred HHhHHHHHHHhhcCCcccccc
Q psy4772 211 HAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 211 ~aw~~r~~~l~~l~~~~~~~~ 231 (235)
. +..++-++..+|+.+++.-
T Consensus 363 ~-~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 363 D-YAWLADALDRLHKPEEAAA 382 (398)
T ss_pred H-HHHHHHHHHHcCCHHHHHH
Confidence 5 5578888888888876643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=82.75 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=51.2
Q ss_pred CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 105 NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 105 ~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
++..| +.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+|+++++|+.+++++++++|
T Consensus 2 ~a~~~-~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAW-YNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHH-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556 467777777788888888888888888888888888888887777227788888888887777
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=85.50 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC---hHHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN---YQVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n---~~aw~~r~~ 184 (235)
+.+|..+...|++++|+..+.+++..+|++ ..+++.+|.++...|+ +++|+..+++++..+|.+ ..++..+|.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 345555555556666666666666555554 3455556666666553 566666666666655554 345555666
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++..+|++++|+..+++++...|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666665544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=106.15 Aligned_cols=170 Identities=10% Similarity=0.061 Sum_probs=154.4
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
+.++.+++|+++|..+++++|-|.++.-..|.-++.-++- +=|+.+|.++|++--.+++.+ .++|.|-.-.+++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P-----E~AlryYRRiLqmG~~speLf-~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP-----EMALRYYRRILQMGAQSPELF-CNIGLCCLYAQQI 374 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh-----HHHHHHHHHHHHhcCCChHHH-hhHHHHHHhhcch
Confidence 4578899999999999999999999999988888877664 359999999999999999999 4799999999999
Q ss_pred HHHHHHHHHHHHcCC---CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 124 ERALALTADAITMNP---ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 124 ~eAl~~~~~al~l~P---~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
+-+|.+|++++...- .-.++|++.|.+....| ++.-|..|++-++.-||++..++++++.+-.+.|+.++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG-DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEecc-chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999999997643 45679999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHhHHHHHHH
Q psy4772 201 AILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 201 ~ai~ldp~n~~aw~~r~~~l 220 (235)
.|-.+.|.-+...+|++.+-
T Consensus 454 ~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 454 AAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HhhhhCccccccccceeEEe
Confidence 99999999988888776543
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=104.49 Aligned_cols=175 Identities=10% Similarity=0.140 Sum_probs=152.6
Q ss_pred CCCCCchhHhhhhh-hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh
Q psy4772 31 DDGPTPVVAIAYSQ-KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW 109 (235)
Q Consensus 31 ~~~~~~~~~~~y~~-~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw 109 (235)
+|.++..|..+... ..+.|+..+...+.+|+..|+..+.+..+|..+..+|+-. +|...+..++..++.++.+|
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~-----ea~~~vr~glr~d~~S~vCw 78 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKE-----EAYELVRLGLRNDLKSHVCW 78 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchH-----HHHHHHHHHhccCcccchhH
Confidence 34445555433332 2468999999999999999999999999999999999864 68999999999999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+..|.++..-.+|.+|++||..||.+.|+|-+.|.-.+.+..+++ +++.....-.+.++.+|.+-..|...+.+..-+
T Consensus 79 -Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 -HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred -HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998 589999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCChHH
Q psy4772 190 GEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
|++..|++.++.-+.......++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCH
Confidence 99999998877776655333333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=85.55 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=93.4
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPAN--- 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--- 140 (235)
+++++.+|..+...|+++ +|+..|.+++..+|+++ .++ +.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYA-----DAIQAFQAFLKKYPKSTYAPNAH-YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCccccHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 467889999999998875 79999999999999874 577 679999999999999999999999999886
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
..++...|.++..++ ++++|+.+++++++.+|++..+-
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 76 PDALLKLGMSLQELG-DKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred cHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHCcCChhHH
Confidence 678999999999999 48999999999999999987643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-10 Score=104.37 Aligned_cols=148 Identities=5% Similarity=-0.031 Sum_probs=118.1
Q ss_pred HHhcCCCchhHh--hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc--------cccHHHHH
Q psy4772 59 LISHDVRNNSAW--TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG--------EKSERALA 128 (235)
Q Consensus 59 aL~~~P~~~~a~--~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~--------~~~~eAl~ 128 (235)
+...-|.+.+|| +.+|.-+... +..+..++|+.+|++|++++|++..+|. .++.++... .....+..
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~--~~~~~~~~A~~lle~Ai~ldP~~a~a~A-~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNS--GDAKSLNKASDLLEEILKSEPDFTYAQA-EKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHHhcCCccHHHHHHHHH
Confidence 334567888888 5666655544 4456778999999999999999999984 566665432 12345566
Q ss_pred HHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 129 LTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 129 ~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
...+++.+ +|..+.++.-++.+....| ++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKG-KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66776664 7777777887887777777 59999999999999999 68899999999999999999999999999999
Q ss_pred CCChH
Q psy4772 207 AKNYH 211 (235)
Q Consensus 207 p~n~~ 211 (235)
|.++.
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 99884
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=92.38 Aligned_cols=105 Identities=10% Similarity=0.177 Sum_probs=91.0
Q ss_pred hhhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~ 121 (235)
..|++++|+.+|+++++..|+. +.+|+++|.++..+|+++ +|+..+.+++.++|.+..++ ..+|.++...|
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g 120 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHD-----KALEYYHQALELNPKQPSAL-NNIAVIYHKRG 120 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHcC
Confidence 3589999999999999988764 579999999999999885 79999999999999999999 57999999999
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+...+...+..++. .+++|+++++++++.+|.++
T Consensus 121 ~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 121 EKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchhH
Confidence 98887766665542 37889999999999999984
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=90.66 Aligned_cols=121 Identities=11% Similarity=0.098 Sum_probs=98.0
Q ss_pred HHHHHHHHhHHhcCCCc--hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccH
Q psy4772 50 SDELSYIEGLISHDVRN--NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~--~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~ 124 (235)
..+...+...++.++.. +.+|+..|.++...|+++ +|+..|.+++.+.|++. .+| +++|.++...|+++
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~-----~A~~~~~~al~l~~~~~~~~~~~-~~lg~~~~~~g~~~ 89 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA-----EALQNYYEAMRLEIDPYDRSYIL-YNIGLIHTSNGEHT 89 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhccccchhhHHHH-HHHHHHHHHcCCHH
Confidence 44445555555666666 778899999999998875 79999999999987744 478 57999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHh-------hH------hHHHHHHHHHHHHHhCCCCh
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKAL-------NK------DLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l-------~~------~~eeal~~~~~al~~~P~n~ 176 (235)
+|+.++++++.++|.+..++.+++.++..+ |+ .+++++..+++++..+|.+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999999999999944 42 24577788888999999875
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=103.59 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=141.4
Q ss_pred hhHhhhhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q psy4772 37 VVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAV 116 (235)
Q Consensus 37 ~~~~~y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i 116 (235)
++.+.|-+...+|.+|-++-+.||+.+..|+.+..++|.+.+..|+++ +|.+.|..+|.-+..+..+. |+.|..
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d-----ka~~~ykeal~ndasc~eal-fniglt 533 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD-----KAAEFYKEALNNDASCTEAL-FNIGLT 533 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH-----HHHHHHHHHHcCchHHHHHH-HHhccc
Confidence 444445554567889999999999999999999999999888888764 78899999999999999998 788999
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC-----
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE----- 191 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~----- 191 (235)
...+|+.++||+||-++-.+--.+.+++...+.+|+-|. +-..|++++.++..+-|.++.....++.++.+-|+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le-d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE-DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 999999999999998887777788899999999998887 57889999999999999999999999999888886
Q ss_pred -----------------------------chHHHHHHHHHHHhCCCChHHhH
Q psy4772 192 -----------------------------PDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 192 -----------------------------~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
.++++.++++|--+-|+- +-|.
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwq 663 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQ 663 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHH
Confidence 267778888887777754 3343
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-10 Score=99.68 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=135.3
Q ss_pred HHhcCCCch---hHh----hhHHHHHhhcCCCCHHHHHHHHHHHHHHH---HhCCCCCchhhHHHHHHHhcc---c----
Q psy4772 59 LISHDVRNN---SAW----TQRYFVINHTTQFTPEVIQREIDYCRDKI---QIAPKNESPWNYLRGAVVNAG---E---- 121 (235)
Q Consensus 59 aL~~~P~~~---~a~----~~~g~~l~~~~~~~e~~~~~Al~~~~kal---~l~p~~~~aw~~~~g~il~~~---~---- 121 (235)
+...-|++. ++| +.+|.-.... +..+..+.|+..|.+++ .++|.+..++ ..++.|+..+ |
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~--~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~-~~lA~~h~~~~~~g~~~~ 316 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYD--FTPESIYRAMTIFDRLQNKSDIQTLKTECY-CLLAECHMSLALHGKSEL 316 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhc--cCHHHHHHHHHHHHHHhhcccCCcccHHHH-HHHHHHHHHHHHhcCCCc
Confidence 455668888 777 7777666655 45567889999999999 9999999999 4677776543 2
Q ss_pred --ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 122 --KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 122 --~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.-.+|+.+-.++++++|.++.|....|.++-..++ ++.++..+++|+.++|+.+.+|+..|+++...|+.++|++.+
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ-AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 24788999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHhHHHHHH
Q psy4772 200 AAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~ 219 (235)
+++++++|.-..+=.-+-|+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HHHhccCchhhHHHHHHHHH
Confidence 99999999988775555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=79.46 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=88.1
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
+|+.+|.++...|++. +|+..+.++++..|.+..+| +.+|.++...+++++|+..+++++.+.|.+..++..++
T Consensus 2 ~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYD-----EALEYYEKALELDPDNADAY-YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHH-----HHHHHHHHHHhcCCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 5788888888888764 78999999999999998888 57899999999999999999999999999999999999
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.++...|+ +++|...+.++++.+|.
T Consensus 76 ~~~~~~~~-~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 76 LAYYKLGK-YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHh-HHHHHHHHHHHHccCCC
Confidence 99999984 89999999999988874
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=99.53 Aligned_cols=181 Identities=9% Similarity=-0.060 Sum_probs=139.6
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCch-hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNN-SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~-~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
...|+++.|..++.++.+..|++. .+...++.++...|+++ .|++.+.++++.+|+++.++ ...|.++...|+
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~-----~Al~~l~~l~~~~P~~~~~l-~ll~~~~~~~~d 202 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH-----AARHGVDKLLEMAPRHKEVL-KLAEEAYIRSGA 202 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhh
Confidence 446899999999999999999986 46666799999999875 79999999999999999998 578999999999
Q ss_pred cHHHHHHHHHHHHcC--------------------------------------C----CChHHHHHHHHHHHHhhHhHHH
Q psy4772 123 SERALALTADAITMN--------------------------------------P----ANYTVWQYRREILKALNKDLHQ 160 (235)
Q Consensus 123 ~~eAl~~~~~al~l~--------------------------------------P----~~~~aw~~r~~~l~~l~~~~ee 160 (235)
+++|++.+.+.++.. | +++.++...+..+...| .+++
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-~~~~ 281 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-DHDS 281 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-ChHH
Confidence 888887777666442 2 23444444444555555 4788
Q ss_pred HHHHHHHHHHhCCCChHHh--HHHHHHHHHcCCchHHHHHHHHHHHhCCCCh--HHhHHHHHHHhhcCCcccccc
Q psy4772 161 ELKYIGEKIKENSKNYQVW--RHRQIIVEWMGEPDEELALTAAILAQDAKNY--HAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw--~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~--~aw~~r~~~l~~l~~~~~~~~ 231 (235)
|+..++++++.+|++.... ..+.......++..++++.++++++.+|+|+ .....+|+++...|+-.+|.-
T Consensus 282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999887642 3333444445677888899999999999999 777888998877777765543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.7e-10 Score=92.60 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=137.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+-+.++.+..+++-.+|++...+.-.|......|+|. +|+..+.++..++|.+..+|+ .+|.++-++|++++|
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~-----~A~~~~rkA~~l~p~d~~~~~-~lgaaldq~Gr~~~A 153 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFG-----EAVSVLRKAARLAPTDWEAWN-LLGAALDQLGRFDEA 153 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchH-----HHHHHHHHHhccCCCChhhhh-HHHHHHHHccChhHH
Confidence 55678888889999999999999999999999999986 799999999999999999995 899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
-..|.+++++.|..+.+.+|.|..+.--| +++.|...+.++...-+.+..+-.+++++....|++.+|-+....
T Consensus 154 r~ay~qAl~L~~~~p~~~nNlgms~~L~g-d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 154 RRAYRQALELAPNEPSIANNLGMSLLLRG-DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhccCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999998888 599999999999999999999999999999999999988765443
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=107.05 Aligned_cols=156 Identities=14% Similarity=0.228 Sum_probs=125.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC-----------------------CHHHHHHHHHHHHHHHHhCC
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-----------------------TPEVIQREIDYCRDKIQIAP 103 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~-----------------------~e~~~~~Al~~~~kal~l~p 103 (235)
|+-.+|.....+-|+ .|.++..|..+|.++....=| ..+.++++...++..++++|
T Consensus 438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 344566666666677 788888888888886544311 12456778888888888888
Q ss_pred CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 104 KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 104 ~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
-....| |++|.+...+++++.|.++|.+++.++|++..+|++....+..+++ -.+|..++++|++.+-+|.+.|-|-.
T Consensus 517 lq~~~w-f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 517 LQLGTW-FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred cchhHH-HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechh
Confidence 888888 7888888888888888888888888888888888888888888885 68888888888888888888888888
Q ss_pred HHHHHcCCchHHHHHHHHHHHh
Q psy4772 184 IIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+....|.+++|+..|.+.+.+
T Consensus 595 lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHh
Confidence 8888888888888888887664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-10 Score=103.07 Aligned_cols=128 Identities=5% Similarity=-0.009 Sum_probs=111.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC---HHHHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT---PEVIQREIDYCRDKIQI--APKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~---e~~~~~Al~~~~kal~l--~p~~~~aw~~~~g~il~~~~ 121 (235)
+.+..|+.+|++|++++|+++.+|-.++.++.....+. +..+.++.....+++.+ +|..+.++ ..+|.+....|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~-~ala~~~~~~g 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIY-EILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHH-HHHHHHHHhcC
Confidence 35789999999999999999999999999886654443 34566777777887775 78888888 46888888889
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++++|...+++|+.++| +..+|..+|.++...|+ .++|++.+++|++++|.++.
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD-NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999 58999999999999995 99999999999999999885
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=101.70 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=149.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+..++|+.+++.+|+..|.+...|..+|.++.++++. +.|-+.|..-++.-|.+...| ..+..+-.+.|..-.
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i-----e~aR~aY~~G~k~cP~~ipLW-llLakleEk~~~~~r 737 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI-----EMAREAYLQGTKKCPNSIPLW-LLLAKLEEKDGQLVR 737 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH-----HHHHHHHHhccccCCCCchHH-HHHHHHHHHhcchhh
Confidence 46789999999999999999999999999999998765 468899999999999999999 577777788889999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC--------------
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-------------- 191 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~-------------- 191 (235)
|...++++...||++...|...-.+-.+.| ..+.|-..+.+||+.-|++...|..-.++.-+-++
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~g-n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAG-NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 999999999999999999999888888888 47999999999999999998888876665543332
Q ss_pred ----------------chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 192 ----------------PDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 192 ----------------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+++|.++|.+|+.+||++..+|.+.-......|
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 689999999999999999999887655555666
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-10 Score=102.90 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
.+.+.+...+.+|+..|+|+... -.+|..+..+|+.++|..+...+++.+|++.-.||-.|.++..-+ .|.+|++||.
T Consensus 22 QYkkgLK~~~~iL~k~~eHgesl-AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~eaiKcy~ 99 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESL-AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYDEAIKCYR 99 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhH-HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHHHHHHHHH
Confidence 34589999999999999999999 589999999999999999999999999999999999999988887 5999999999
Q ss_pred HHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 167 EKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
.|+.++|+|-+.|..++.+..++++++...+.=...+.++|++-..|.-.+...-.+|.-
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776665555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-10 Score=108.59 Aligned_cols=147 Identities=7% Similarity=-0.001 Sum_probs=103.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------------------ 106 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------------------ 106 (235)
..+++++|++.++.++..+|+...+|+..|.++.+.+++.+ +... .++.+-+.+.
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~-----~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLND-----SNLL--NLIDSFSQNLKWAIVEHICDKILLYGEN 115 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhh-----hhhh--hhhhhcccccchhHHHHHHHHHHhhhhh
Confidence 45678888888888888888888888888887777777653 3332 6666666666
Q ss_pred -chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 107 -SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 107 -~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
.|. +.+|.|+.++|+.++|...++++|+++|+++.+.++.|..|... ++++|+.++.+|+++
T Consensus 116 k~Al-~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 116 KLAL-RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH--------------
Confidence 666 56777777777777777777777777777777777777777666 367777777777665
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+...+.+.++.+...+.+..+|.+..-+..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 333346667777777777777777766444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=104.26 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=121.9
Q ss_pred hcHHHHHHHHHhHHhcCCCch-------------------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc
Q psy4772 47 NLFSDELSYIEGLISHDVRNN-------------------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~-------------------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~ 107 (235)
+.+.++... .++...+.+. .|++.+|.|+..+|+++ +|...++++|+++|+++.
T Consensus 79 ~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~-----ka~~~yer~L~~D~~n~~ 151 (906)
T PRK14720 79 RPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK-----KLKGVWERLVKADRDNPE 151 (906)
T ss_pred cchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH-----HHHHHHHHHHhcCcccHH
Confidence 556777766 9999999999 99999999999999986 799999999999999999
Q ss_pred hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH----
Q psy4772 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ---- 183 (235)
Q Consensus 108 aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~---- 183 (235)
+.| +.|..+... +.++|+..+.+|+.+ +..-+ .+.++.+.+.+.++.+|.+..-..+.-
T Consensus 152 aLN-n~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~k-q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 152 IVK-KLATSYEEE-DKEKAITYLKKAIYR--------------FIKKK-QYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHH-HHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhh-cchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 996 689999988 999999999999986 33333 378888888888888888777644432
Q ss_pred ----------------HHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 184 ----------------IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 184 ----------------~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
..+...+++++.+..++++++.+|+|.-+.....-++
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 2333344577889999999999999988877766665
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=98.92 Aligned_cols=184 Identities=8% Similarity=0.026 Sum_probs=148.0
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHH--HHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPE--VIQREIDYCRDKIQIAPKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~--~~~~Al~~~~kal~l~p~~~~aw~~~~g~ 115 (235)
.+.|.+|+..|++||.+ +|.-+.++.+++.++...|+|+++ -.++|++.+.+.+..++....+-....+.
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 46789999999999987 788899999999999999999864 46777777777555555555444356788
Q ss_pred HHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--------CCChHHh
Q psy4772 116 VVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN--------SKNYQVW 179 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~--------P~n~~aw 179 (235)
+...++++++|+.++.+++++ +|.-+....++|.++...|+ +.+|.++++++|++. +.--...
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 899999999999999999875 23445677889999999995 999999999999865 3333477
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHh-------CCCChHHhHHHHHHHhhcCCccccc
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQ-------DAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~l-------dp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++++..+...+++.+|-..|..++.+ +|+-...+.+++-++..+|+..+++
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 88899999999988888877777664 4666778889999999999986654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-09 Score=95.99 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=122.9
Q ss_pred HhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 100 QIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 100 ~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
..+|.-..+| |.++......|.+++|+..++..+...|+|+..|-.++.++...++ ..+|++.+++++.++|..+..|
T Consensus 300 ~~~~~~~aa~-YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 300 RSKRGGLAAQ-YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HhCccchHHH-HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHH
Confidence 3348888999 8888888899999999999999999999999999999999999995 9999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.++|.++.+.|++.+|+..+++.+.-+|.|+..|.+++-+...+|+.+++..
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 9999999999999999999999999999999999999999999999877654
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-10 Score=89.01 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=89.2
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChH-----HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYT-----VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~-----aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
-|.-+...|.|++|..-|..||++.|..++ .+.+|+-++.+|++ ++.|+..|.++|+++|.+-.|...|+.++.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 477788889999999999999999998876 67789999999995 899999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 188 WMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
++..+++|++.|++++++||....+-
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 99999999999999999999987653
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-09 Score=95.88 Aligned_cols=189 Identities=11% Similarity=0.193 Sum_probs=158.9
Q ss_pred CCchhHhhhhhhh---hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-------------------------
Q psy4772 34 PTPVVAIAYSQKC---NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP------------------------- 85 (235)
Q Consensus 34 ~~~~~~~~y~~~~---~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e------------------------- 85 (235)
..++.=++|+... |+...|...+..|+..+|.+-++|...-.+.....+++.
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 4455555566432 788999999999999999999999988877776666542
Q ss_pred ---HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHH
Q psy4772 86 ---EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQEL 162 (235)
Q Consensus 86 ---~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal 162 (235)
+..++|+.+++.+|+..|.++..| ..+|.|+..+++.+.|...|..-++..|.++..|.-++.+-+..| ..-.|.
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f~Kl~-lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDFHKLW-LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCchHHHH-HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHH
Confidence 347788999999999999999999 689999999999999999999999999999999999888888888 488999
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 163 KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 163 ~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
..++++..+||+|...|......-.+.|+.+.|-....+|+.-=|++.-.|.--.++-..=+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999887776654333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-09 Score=90.05 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh--HhHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN--KDLHQELKY 164 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~--~~~eeal~~ 164 (235)
..++-+.-.+.-|+.||++...| ..+|.++..+|+...|+..|.+++++.|+++..+.-.+.++.... +.-.++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW-~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGW-DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 35667778888999999999999 589999999999999999999999999999999999999888763 345788999
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++++.||.|..+.+.+++.+...|+|.+|+...+..+...|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999999999998887764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-10 Score=74.26 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+|.++...|++++|+.+|+++++.+|+++.+|+.+|.++...|+ +++|+..++++++++|+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCC
Confidence 34444455555555555555555555555555555555555542 455555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-10 Score=74.46 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=55.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
.+|.++...|+ +++|+.+++++++.+|+++.+|+.+|.++...|++++|+..+++++.++|+|+
T Consensus 2 ~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGD-YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTH-HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788888884 99999999999999999999999999999999999999999999999999875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.6e-09 Score=89.29 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=111.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---cccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---EKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---~~~~ 124 (235)
..++.+.-.+.-|..||++++-|..+|.+++.+|+++ .|+..|.+++++.|+++..+ -..|.++... ....
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~-----~A~~AY~~A~rL~g~n~~~~-~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS-----DALLAYRNALRLAGDNPEIL-LGLAEALYYQAGQQMTA 210 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCcccH
Confidence 3578888999999999999999999999999999987 69999999999999999999 5788887653 2478
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++...++++|.++|.+..+.+.++..+..-| ++.+|+..+++.+...|.+..
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g-~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQG-DYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999 599999999999999987753
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=100.19 Aligned_cols=168 Identities=13% Similarity=0.180 Sum_probs=126.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA------ 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~------ 119 (235)
.|-.+.|+..|++. ..|-....|+...|+.. +|.....+-++ +|.++..| ..+|.+...
T Consensus 411 lGitksAl~I~Erl--------emw~~vi~CY~~lg~~~-----kaeei~~q~le-k~~d~~ly-c~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 411 LGITKSALVIFERL--------EMWDPVILCYLLLGQHG-----KAEEINRQELE-KDPDPRLY-CLLGDVLHDPSLYEK 475 (777)
T ss_pred cchHHHHHHHHHhH--------HHHHHHHHHHHHhcccc-----hHHHHHHHHhc-CCCcchhH-HHhhhhccChHHHHH
Confidence 46678888888774 66888889999998664 56666666666 77777777 457776443
Q ss_pred ----------------------ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 120 ----------------------GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 120 ----------------------~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
.++++++.++++..++++|-....|+.+|.+..++++ +..|.++|.+.+.++|+|..
T Consensus 476 awElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek-~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 476 AWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK-EQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred HHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh-hHHHHHHHHHHhhcCCCchh
Confidence 2456777777788888888888888888888888874 77888888888888888888
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+|++++.++.+.+.-.+|...++.|++.+-+|...|-|...+...+|....+
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 8888888888888878888888888887777777777777777777665544
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=89.75 Aligned_cols=171 Identities=8% Similarity=0.013 Sum_probs=127.0
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
-+..+..++-..++.-|.|.+.+-..|.|++..|++. +|+..|.++..+||...++.- .-|.++...|++++--
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~-----~a~~~Fe~~~~~dpy~i~~MD-~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF-----QAEDIFSSTLCANPDNVEAMD-LYAVLLGQEGGCEQDS 286 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch-----HHHHHHHHHhhCChhhhhhHH-HHHHHHHhccCHhhHH
Confidence 3678888999999999999999999999999999986 688889999999998887773 5667777777776666
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
......+.+......-|+--+-++..-+ +++.|+.+.+++|+.+|++.+++..+|.++..+++.++|+=.|+.|+.+-|
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 6666666666666666666666665555 377777777777777777777777777777777777777777777777777
Q ss_pred CChHHhHHHHHHHhhcCC
Q psy4772 208 KNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 208 ~n~~aw~~r~~~l~~l~~ 225 (235)
-.-..|..+--++...|+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhHHHHHHHHHHHHhhch
Confidence 666654444333333333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-09 Score=77.47 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=60.4
Q ss_pred ccccHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH
Q psy4772 120 GEKSERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
.|++++|+..++++++.+|. +...|+.+|.|+.+.|+ +++|+..+++ ++.+|.+....+.+|.++..+|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677788888888888774 45667777888888874 7888888877 77777777777777888888888888887
Q ss_pred HHHHH
Q psy4772 198 LTAAI 202 (235)
Q Consensus 198 ~~~~a 202 (235)
.+++|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77764
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-09 Score=97.16 Aligned_cols=179 Identities=10% Similarity=0.049 Sum_probs=140.2
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw 109 (235)
.|+|+.|+..|..||+. .|.-.......|.++..+++|. +|+..|++||.+ +|.-..++
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~-----eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD-----EAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 37899999999999999 8888888888999999999986 577777777764 33444566
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--------C
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN--------S 173 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~--------P 173 (235)
.+++.++.+.|++.||..++++|+++ .|.-...+.+.+.++...++ +++|+.++++++++. |
T Consensus 287 -~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 287 -NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred -HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhhccccch
Confidence 47888999999999999999999875 34555677788888888885 999999999998754 2
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC--------CCChHHhHHHHHHHhhcCCcccccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQD--------AKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld--------p~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.-.....++|.++...|++.+|.+++++||.+. +.......+++....-+++..+++.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 335688899999999999999999999999864 3334445555555554444444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-08 Score=87.34 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=91.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhH-HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQR-YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~-g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
|+|+.|.....++-... +++...+.. +.+...+|+++ +|...+.++.+.+|++..+.....+.+....|++++
T Consensus 98 Gd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~-----~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEA-----RANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 78888886666544432 235555555 44447788764 799999999999999875543345788999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
|+..++++++.+|+++.+....+.++...| +|++++..+.++.+
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw~~a~~~l~~l~k 215 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 48888865555543
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=90.54 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=83.8
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
.+++.|+.+++.+.+|+..++++|+++|+|..|++.||.++..+++ ++.|+..|+++++++|.|-.+-..+..+-.+..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999994 999999999999999999989888888888877
Q ss_pred Cch-HHHHHHHHHHHhCC
Q psy4772 191 EPD-EELALTAAILAQDA 207 (235)
Q Consensus 191 ~~~-~Al~~~~~ai~ldp 207 (235)
++. ++.+.|.+.+..-+
T Consensus 340 ~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 754 55778888877555
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=86.75 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=94.5
Q ss_pred chhhHHHHHHH-hcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC---ChHHh
Q psy4772 107 SPWNYLRGAVV-NAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSK---NYQVW 179 (235)
Q Consensus 107 ~aw~~~~g~il-~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~---n~~aw 179 (235)
..+ |..+..+ ...|++++|+..|++.+...|++ +.+++.+|.++...| ++++|+..|+++++.+|+ .+.+|
T Consensus 143 ~~~-Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTD-YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 455 5666655 55689999999999999999999 479999999999999 599999999999998887 57899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+.+|.++..+|++++|+..|++++...|+...+-.-+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999998764443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-07 Score=88.76 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 145 QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 145 ~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++..+..+| ++++|+++++++|...|..+..+.-+|.++.+.|++.+|.++.+.|-.+|+.|-.
T Consensus 198 ~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 198 YFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 45555555555 3555555555555555555555555555555555555555555555555555543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-10 Score=77.98 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCC--CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPK--NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 90 ~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+|+..+++++..+|. +...| +.+|.++...|++++|+..+++ +..+|.+....+..|.++..+|+ +++|+..+++
T Consensus 7 ~Ai~~~~k~~~~~~~~~~~~~~-~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~~l~~ 83 (84)
T PF12895_consen 7 NAIKYYEKLLELDPTNPNSAYL-YNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHCGTHHHHHH-HHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChhHHHH-HHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHhc
Confidence 444444444444443 22233 3345555555555555555555 44455444444444555555552 5555555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=85.24 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=93.1
Q ss_pred chhHhhhHHHHH-hhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCC--
Q psy4772 66 NNSAWTQRYFVI-NHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPA-- 139 (235)
Q Consensus 66 ~~~a~~~~g~~l-~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~-- 139 (235)
....++..+..+ ...|+|+ +|+..|.+.++..|++. .++ +.+|.++...|++++|+..|.+++...|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~-----~Ai~af~~fl~~yP~s~~a~~A~-y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQD-----DAIVAFQNFVKKYPDSTYQPNAN-YWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHCcCCcchHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 347788888876 4467664 79999999999999984 688 78999999999999999999999988777
Q ss_pred -ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 140 -NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 140 -~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.+.+++..|.++..+| +.++|+..|+++++.+|++..+---
T Consensus 215 ~~~dAl~klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 215 KAADAMFKVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred chhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 5889999999999999 5999999999999999998765433
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-08 Score=90.03 Aligned_cols=173 Identities=12% Similarity=0.155 Sum_probs=138.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES--PWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~--aw~~~~g~il~~~~~~ 123 (235)
-+.|++|+...+++|...|+..++.+.+-.++...++|+ +|+ +.+++++.+-. ...+-++.|..++++.
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~-----~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYE-----DAL----KLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHH-----HHH----HHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 468999999999999999999999999999999998885 455 56667764222 2213688999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC------------------------------C
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN------------------------------S 173 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~------------------------------P 173 (235)
++|+.+++ ..++...-..+-++.+++++++ |++|+..|+.+++-+ |
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99999999 6777778899999999999995 999999887774322 2
Q ss_pred -CChHHhHHHHHHHHHcCCchHHHHHHHHHH-------HhCCCC--------hHHhHHHHHHHhhcCCcccccc
Q psy4772 174 -KNYQVWRHRQIIVEWMGEPDEELALTAAIL-------AQDAKN--------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 174 -~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai-------~ldp~n--------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
..+...++.+.++...|+|.+|++.+.+|+ ..+..+ ...-..++++++++|++.++-.
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 367789999999999999999999999992 222222 2345568899999999977644
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=88.39 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=105.8
Q ss_pred hcHHHHHHHHHhHHhcCCCc---------------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhH
Q psy4772 47 NLFSDELSYIEGLISHDVRN---------------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~---------------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~ 111 (235)
|+|..|...|++|++.-+.. ...+.|++.|+..+++|. +|++.|+++|.++|+|..|. |
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----~Ai~~c~kvLe~~~~N~KAL-y 295 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----EAIESCNKVLELDPNNVKAL-Y 295 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----HHHHHHHHHHhcCCCchhHH-H
Confidence 57899999999988874422 356889999999998875 79999999999999999999 8
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
++|.++..+|.++.|...|+++++++|.|-.+-..+..+-.+..+..+.+.+.|.+.+..-+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999988888887656677888888887655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=81.95 Aligned_cols=180 Identities=10% Similarity=0.065 Sum_probs=133.7
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH---------------------------------HHHHHHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------EVIQREIDY 94 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------~~~~~Al~~ 94 (235)
..++|+..|-..++.+|+..+++..+|.++.+.|+.+. +-+++|.+.
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 45899999999999999999999999999999997542 245666666
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHhh-HhHHHHHHHHHHHHH
Q psy4772 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT---VWQYRREILKALN-KDLHQELKYIGEKIK 170 (235)
Q Consensus 95 ~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~---aw~~r~~~l~~l~-~~~eeal~~~~~al~ 170 (235)
|.........-..|.. .+-.|++.-..+++|++.-++..++.|+... |.++--.+...+. .+++.|+..+.+|++
T Consensus 130 f~~L~de~efa~~Alq-qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 130 FNQLVDEGEFAEGALQ-QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHhcchhhhHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 6665544333344553 4557788888889999988888888887765 3333333333221 247889999999999
Q ss_pred hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH-HHHHHHhhcCCccc
Q psy4772 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ-HRQWVINLLDDDDR 228 (235)
Q Consensus 171 ~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~-~r~~~l~~l~~~~~ 228 (235)
-||++.-|=..+|.+....|+|+.|++.++++++.||...+--. -+..++..+|+-.+
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999998765322 23333455555433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-08 Score=77.04 Aligned_cols=102 Identities=11% Similarity=-0.025 Sum_probs=53.6
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
+.++.-+..+..|.=++..|+++ +|...|.-+...+|-++.-| ..+|.|++.++.|++|+.+|..+..++++++
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~-----eA~~~F~~L~~~d~~n~~Y~-~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLD-----EAETFFRFLCIYDFYNPDYT-MGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 33444445555555555555543 35555555555555555555 4555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
...++.|.|+..+|+ .+.|+.+++.++.
T Consensus 106 ~p~f~agqC~l~l~~-~~~A~~~f~~a~~ 133 (165)
T PRK15331 106 RPVFFTGQCQLLMRK-AAKARQCFELVNE 133 (165)
T ss_pred CccchHHHHHHHhCC-HHHHHHHHHHHHh
Confidence 555555555555552 4555555555555
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-07 Score=77.15 Aligned_cols=155 Identities=10% Similarity=-0.028 Sum_probs=85.6
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH-
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNAGEKSERALALTADAITMNPANYT- 142 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~- 142 (235)
+..++..|...+..|+|. +|+..|.+++...|..+. ++ +.+|.++...|++++|+..++..++..|+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~-----~Ai~~f~~l~~~~P~s~~a~~A~-l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYE-----EAIKLFEKLIDRYPNSPYAPQAQ-LMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HH-----HHHHHHHHHHHH-TTSTTHHHHH-HHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred HHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHCCCChHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 445556666666665543 466666666666555442 34 34555566666666666666666666665543
Q ss_pred --HHHHHHHHHHHhhH----------hHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHHHHHcCCch
Q psy4772 143 --VWQYRREILKALNK----------DLHQELKYIGEKIKENSKNYQVW-----------------RHRQIIVEWMGEPD 193 (235)
Q Consensus 143 --aw~~r~~~l~~l~~----------~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~l~~l~~~~ 193 (235)
|++.+|.++..+.+ ...+|+..++.+++..|++..+- ...|..+.+.|.+.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 55555655544431 12456666666666666655322 23456666777788
Q ss_pred HHHHHHHHHHHhCCCChHH---hHHHHHHHhhcCCcc
Q psy4772 194 EELALTAAILAQDAKNYHA---WQHRQWVINLLDDDD 227 (235)
Q Consensus 194 ~Al~~~~~ai~ldp~n~~a---w~~r~~~l~~l~~~~ 227 (235)
.|+..++.+|..-|+...+ +..+......||...
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 8888888888888877654 333444445666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-08 Score=78.47 Aligned_cols=100 Identities=5% Similarity=-0.089 Sum_probs=69.6
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|..|.-+...|++++|...|.-+...+|-++.-|..+|-|+..+++ +++|+.+|..+..+++++|...++.|.++..+|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 4555666666777777777777777777777777777777777763 777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHHHhCCCChHH
Q psy4772 191 EPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~a 212 (235)
+...|+.+|..++. .|.+...
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHH
Confidence 77777777777776 4554443
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=80.82 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=78.5
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
+-.-|.-++..|.|. +|...|..||.+-|..++ ....++|.++.+++..+.|+..+.++|+++|.+..|+-
T Consensus 98 lK~EGN~~F~ngdye-----eA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYE-----EANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHhhhcccHH-----HHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 334455566666554 677777777777777764 11135677777888888888888888888888888888
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.|+.+|.++.+ +++|+..|.++++++|++-++--
T Consensus 173 RRAeayek~ek-~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 173 RRAEAYEKMEK-YEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHhCcchHHHHH
Confidence 88888888874 88888888888888888765543
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-09 Score=95.27 Aligned_cols=172 Identities=8% Similarity=0.016 Sum_probs=122.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|.|++|+.+|.+++.+.|.|+..+.+|+.++.++++|. -|..+|..|+.+|-....|+ .+||.+...+|..+||
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA-----~AE~DC~~AiaLd~~Y~KAY-SRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFA-----QAEEDCEAAIALDKLYVKAY-SRRMQARESLGNNMEA 184 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHH-----HHHHhHHHHHHhhHHHHHHH-HHHHHHHHHHhhHHHH
Confidence 67899999999999999999999999999999999886 57789999999999999999 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH--------------------------------------hHHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK--------------------------------------DLHQELKYIGEK 168 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~--------------------------------------~~eeal~~~~~a 168 (235)
-+.++.+|++.|++... ..++..+.. .++.++.|+-+-
T Consensus 185 KkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~ 260 (536)
T KOG4648|consen 185 KKDCETVLALEPKNIEL----KKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSP 260 (536)
T ss_pred HHhHHHHHhhCcccHHH----HHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeecc
Confidence 99999999999997543 333333321 112222222222
Q ss_pred HHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 169 IKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 169 l~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+.-+-.|...-.+ ...+.+..++++++..+.+++.++|....+...++.+-.++|.-.++
T Consensus 261 ~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~ 320 (536)
T KOG4648|consen 261 RATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEV 320 (536)
T ss_pred ccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhc
Confidence 2222222222222 33444455566777777777778877777777766666665554433
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=89.04 Aligned_cols=101 Identities=20% Similarity=0.115 Sum_probs=90.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
-+|.-+.+.|+|+||++||.+++..+|-++-.+.+|+.+|.++++ |..|-..|..|+.+|-....||..|+.+-..+|+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 578888899999999999999999999999999999999999985 8999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCChHHh
Q psy4772 192 PDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw 213 (235)
..+|.+.++.++++.|++...-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 9999999999999999976643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-07 Score=77.18 Aligned_cols=146 Identities=7% Similarity=0.039 Sum_probs=101.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHh---hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhcc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAW---TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNAG 120 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~---~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~~ 120 (235)
|+|++|+..|++++...|..+.+- +.+|.++...++|. +|+..+++.++++|+++. ++ +.+|.+....
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~-----~A~~~~e~fi~~~P~~~~~~~a~-Y~~g~~~~~~ 119 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP-----LAQAAIDRFIRLNPTHPNIDYVL-YMRGLTNMAL 119 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHhCcCCCchHHHH-HHHHHhhhhc
Confidence 789999999999999999887655 88899999998875 799999999999999985 45 6677764333
Q ss_pred c------------------ccHHHHHHHHHHHHcCCCChHHHHHHH---HH--------------HHHhhHhHHHHHHHH
Q psy4772 121 E------------------KSERALALTADAITMNPANYTVWQYRR---EI--------------LKALNKDLHQELKYI 165 (235)
Q Consensus 121 ~------------------~~~eAl~~~~~al~l~P~~~~aw~~r~---~~--------------l~~l~~~~eeal~~~ 165 (235)
+ ...+|+..+++.++..|++..+---+. .+ |.+.| .+..|+.-+
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~-~y~AA~~r~ 198 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG-AYVAVVNRV 198 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHH
Confidence 2 136788999999999998876543322 11 22222 245566666
Q ss_pred HHHHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHH
Q psy4772 166 GEKIKENSKNY---QVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 166 ~~al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
+.+++..|... .+.+.++.++..+|..++|.+..
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 66666555443 35555555555666655555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.3e-07 Score=69.86 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=131.0
Q ss_pred hhcHHHHHHHHHhHHh--cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH-HHhcccc
Q psy4772 46 CNLFSDELSYIEGLIS--HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGA-VVNAGEK 122 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~--~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~-il~~~~~ 122 (235)
.+.+..++..+..++. ..+.....+...|.+....+.+ .+++..+.+++...+.....+. ..+. ++...|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 145 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY-----EEALELLEKALALDPDPDLAEA-LLALGALYELGD 145 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHcCCCCcchHHH-HHHHHHHHHcCC
Confidence 3567788888888887 7888888888888888877764 3688888888888887766553 4555 7788888
Q ss_pred cHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-ChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 123 SERALALTADAITMNP---ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK-NYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P---~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~-n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
+++|+..+.+++..+| ........++..+...+ .+++++..+.+++...|. ...++..++..+...+.+..++..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALG-RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 8888888888888777 45566666666666666 478888888888888888 688888888888888888888888
Q ss_pred HHHHHHhCCCChHHhHHHHHHHh
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+..++...|.....+..++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 225 YEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHhhCcccHHHHhhHHHHHH
Confidence 88888888887777777776666
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=94.65 Aligned_cols=167 Identities=13% Similarity=0.090 Sum_probs=146.4
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC--chhhHHHHHHHhcccccHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE--SPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~--~aw~~~~g~il~~~~~~~e 125 (235)
+...|..+|++|.++||.++++|.-.+..+..... ++.|...+..+-+..|... ..| .++|..+.+.+..-.
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~-----we~a~~I~l~~~qka~a~~~k~nW-~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEEST-----WEEAFEICLRAAQKAPAFACKENW-VQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc-----HHHHHHHHHHHhhhchHHHHHhhh-hhccccccCccchhh
Confidence 67899999999999999999999999999887654 4567788888888888766 467 468888889999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|+.+++.+|+++.+|...|.+|-+-|+ +.-|++.+.++..++|.+.-+-+..+......|+|.++++.+...|..
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 999999999999999999999999999999999999999999998887
Q ss_pred CCCChHHhHHHHHHHh
Q psy4772 206 DAKNYHAWQHRQWVIN 221 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~ 221 (235)
-..-..+...++-++.
T Consensus 660 ~s~e~~~q~gLaE~~i 675 (1238)
T KOG1127|consen 660 FSLERTGQNGLAESVI 675 (1238)
T ss_pred HHHHHHhhhhHHHHHH
Confidence 7776666666555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-08 Score=67.42 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=37.8
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.++...+++++|++++++++.++|.++.+|..+|.++..+|+ +.+|+..++++++..|++..+-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHH
Confidence 344555556666666666666666666666666666666653 56666666666666665554443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-08 Score=76.63 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc----------ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH-
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE----------KSERALALTADAITMNPANYTVWQYRREILKALNK- 156 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~----------~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~- 156 (235)
++.|.+.+......||.++.++ ++.|.++..+. .+++|+.-+++||.++|+...|+++.|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL-~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNL-TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHH-HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 5667788888888888888888 47787776642 35777788888888888888888888888887763
Q ss_pred ---------hHHHHHHHHHHHHHhCCCCh
Q psy4772 157 ---------DLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 157 ---------~~eeal~~~~~al~~~P~n~ 176 (235)
.|++|..+|++|...+|.|.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 36667777777777777764
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=90.00 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=56.0
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH---HHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV---WQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a---w~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
-+|+++.+| +++|.++..+|++++|+.+|+++|+++|++..+ |++++-+|..+| ++++|+.+++++|++.
T Consensus 70 ~dP~~a~a~-~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDA-VNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 578888888 478888888888888888888888888888754 888888888888 4788888888888873
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-08 Score=88.73 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=64.7
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch---hhHHHHHHHhcccccHHHHHHHHHHHHcC
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP---WNYLRGAVVNAGEKSERALALTADAITMN 137 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a---w~~~~g~il~~~~~~~eAl~~~~~al~l~ 137 (235)
.+|+++.+|+++|.++..+|+|+ +|+..|+++|+++|++..+ | +++|.++..+|+.++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGrye-----EAIa~f~rALeL~Pd~aeA~~A~-yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVK-----DALAQFETALELNPNPDEAQAAY-YNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCCchHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 69999999999999999999885 7999999999999999965 8 789999999999999999999999983
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=76.12 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=78.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
+-.|+.|.+.++.....||.+++++++-|.+|..+.++.. ..+++|+.-|+.||.++|+...+. +.+|.++...
T Consensus 4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl-w~lGnA~ts~ 82 (186)
T PF06552_consen 4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL-WCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHH
Confidence 3468999999999999999999999999999999988743 578999999999999999999998 5799999875
Q ss_pred cc-----------cHHHHHHHHHHHHcCCCChHH
Q psy4772 121 EK-----------SERALALTADAITMNPANYTV 143 (235)
Q Consensus 121 ~~-----------~~eAl~~~~~al~l~P~~~~a 143 (235)
+. +++|..+|++|...+|++...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 43 688999999999999998543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=70.48 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=60.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC---ChHHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSK---NYQVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~---n~~aw~~r~~ 184 (235)
|.+++++...|+.++|+..|++++...+.. ..++..++..+..+|+ +++|+..+++++..+|+ +.......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 556666666666666666666666654333 3466666667777773 67777777777766666 6666666666
Q ss_pred HHHHcCCchHHHHHHHHHHH
Q psy4772 185 IVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ 204 (235)
++...|++++|+..+-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66777777776666655554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-08 Score=66.65 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=62.4
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
+.++.+.+ ++++|+.+++++++.+|.++.+|..+|.++..+|++.+|+..++++++..|++..+-..+.
T Consensus 2 ~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35677777 5999999999999999999999999999999999999999999999999999988755443
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=72.00 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=85.5
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVE 187 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~ 187 (235)
..|..+.+.|+.++||+.|.++|.+.|+.+.++++|+..+.-.| +-++|++.+++++++.-.-. +++..||.++.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG-DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999998777 47999999999999765433 58899999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCCh
Q psy4772 188 WMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
.+|+-+.|...|+.|-.+-..++
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHHH
Confidence 99999999999999887776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-06 Score=68.14 Aligned_cols=157 Identities=15% Similarity=0.238 Sum_probs=137.7
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHhCCC---CCchhhHHHHHHHhcc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYF-VINHTTQFTPEVIQREIDYCRDKIQIAPK---NESPWNYLRGAVVNAG 120 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~-~l~~~~~~~e~~~~~Al~~~~kal~l~p~---~~~aw~~~~g~il~~~ 120 (235)
..+.+..++..+..++...+.....+...+. ++...|+++ +|+..+.+++..+|. ..... ...+..+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE-----EALELYEKALELDPELNELAEAL-LALGALLEAL 180 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCCccchHHHH-HHhhhHHHHh
Confidence 3567889999999999999999888888887 888888875 799999999998873 33333 4456667778
Q ss_pred cccHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 121 EKSERALALTADAITMNPA-NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~-~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
+.+++++..+.+++...|. ...++..++.++...+ .++.++..+.+++...|.....+..++..+...+.+.++...+
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 8999999999999999999 7999999999999998 4899999999999999998889999999999777799999999
Q ss_pred HHHHHhCCC
Q psy4772 200 AAILAQDAK 208 (235)
Q Consensus 200 ~~ai~ldp~ 208 (235)
.+++..+|.
T Consensus 260 ~~~~~~~~~ 268 (291)
T COG0457 260 EKALELDPD 268 (291)
T ss_pred HHHHHhCcc
Confidence 999999998
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=71.96 Aligned_cols=111 Identities=14% Similarity=0.007 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELK 163 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~ 163 (235)
++...+.+++..+|+. ..+. +.+|.++...|++++|+..++.++...|+. ..+...++.++...|+ +++|+.
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~-l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-~d~Al~ 106 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAA-LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-YDEALA 106 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 4555678888888888 3455 457788888899999999999999877665 3477778888888884 899999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 164 YIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 164 ~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
.++. +.-.+-.+.++..+|.++...|++++|+..|++||
T Consensus 107 ~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 107 TLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8866 45556667788889999999999999999998875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-06 Score=81.80 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=125.5
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH---------------------------------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP--------------------------------------- 85 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e--------------------------------------- 85 (235)
.+|++++|...|...|..||+|..-+..+..++.......+
T Consensus 50 kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~ 129 (517)
T PF12569_consen 50 KLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKER 129 (517)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHH
Confidence 35889999999999999999999988888888732221000
Q ss_pred ------------------------------HHHHHHHHHHHHHHHhC----------CCCCch--hh-HHHHHHHhcccc
Q psy4772 86 ------------------------------EVIQREIDYCRDKIQIA----------PKNESP--WN-YLRGAVVNAGEK 122 (235)
Q Consensus 86 ------------------------------~~~~~Al~~~~kal~l~----------p~~~~a--w~-~~~g~il~~~~~ 122 (235)
..+++-+..|...++-+ ++.+++ |. +.++..+...|+
T Consensus 130 ~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 12333333333333222 122322 42 346777888999
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++|+.+.+++|+..|..+..+..+|.|+.+.| ++.+|..+++.+-.+|+.+--.-..-+..+.+.|+.++|.+.+..-
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999 5999999999999999999888888889999999999999987776
Q ss_pred HHhC
Q psy4772 203 LAQD 206 (235)
Q Consensus 203 i~ld 206 (235)
..-+
T Consensus 289 tr~~ 292 (517)
T PF12569_consen 289 TRED 292 (517)
T ss_pred cCCC
Confidence 6655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-08 Score=65.19 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.|++++|+..+++++..+|++..++..++.++...|+ +++|...+++++..+|+++..+.-
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3455555555555555555555555555555555552 555555555555555555444433
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=71.93 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=99.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~ 119 (235)
-++...+...++..++-.|+. ..+...+|.+++..|+++ +|+..|++++...|+.. .++ ++++.++..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~-----~A~~~l~~~~~~~~d~~l~~~a~-l~LA~~~~~ 97 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD-----EAKAALEKALANAPDPELKPLAR-LRLARILLQ 97 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHH
Confidence 356788888899999999999 678888999999999875 79999999999886663 366 678999999
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
.|++++|+..++. +.-.+-.+.++..+|.|+...| ++++|+..|+++|
T Consensus 98 ~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG-DYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence 9999999999976 4556667778889999999999 4999999999875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-07 Score=81.82 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
++.|++.+++..+.+|+ ++ ..++.++...++..+|++...++|..+|.++..+...+..+...++ ++.|+...++
T Consensus 185 ~~~ai~lle~L~~~~pe---v~-~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~-~~lAL~iAk~ 259 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VA-VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK-YELALEIAKK 259 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HH-HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 46899999999998876 44 4566777778888999999999999999999999999999999984 8999999999
Q ss_pred HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 168 al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++..|.++.+|+.++.++..+|++++|+-.++..
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999766543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-06 Score=72.26 Aligned_cols=160 Identities=10% Similarity=-0.056 Sum_probs=126.9
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--HHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN--YLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~--~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
..+..++..|.-....|+|+ +|+..|.+++...|..+.+-. +.+|.++.+.+++++|+..+++.++++|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~-----~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWK-----QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 36777899999999999875 799999999999999876521 35788999999999999999999999888754
Q ss_pred ---HHHHHHHHHHHhhH-----------------hHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHH
Q psy4772 143 ---VWQYRREILKALNK-----------------DLHQELKYIGEKIKENSKNYQVW-----------------RHRQII 185 (235)
Q Consensus 143 ---aw~~r~~~l~~l~~-----------------~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~ 185 (235)
|++.+|.+...+++ ...+|+..++++++..|++.-+- .+.+..
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888887655531 13578999999999999886421 234566
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCh---HHhHHHHHHHhhcCCcccc
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNY---HAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~---~aw~~r~~~l~~l~~~~~~ 229 (235)
+.+.|.+..|+.-++.+++.-|+-. .+.+.++.....+|..+.+
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 7778889999999999999888765 4556666667788877654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=70.12 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=85.3
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCC---C
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPA---N 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~---~ 140 (235)
+.+++++++++..+|+.+ +|+..|.+++...+... .++ ..+|..+..+|++++|+..+++++...|+ +
T Consensus 1 ~~~~~~~A~a~d~~G~~~-----~Ai~~Y~~Al~~gL~~~~~~~a~-i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREE-----EAIPLYRRALAAGLSGADRRRAL-IQLASTLRNLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred CchHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCchHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc
Confidence 468899999999999854 79999999999866553 477 57899999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
..+....+.++.++|+ .++|+..+-.++.
T Consensus 75 ~~l~~f~Al~L~~~gr-~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNLGR-PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 8899999999999995 8999998888775
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=82.29 Aligned_cols=111 Identities=17% Similarity=0.263 Sum_probs=98.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.++.|+..+++..+.+|+ +...++.++...++- .+|++..+++|+.+|.++..+. ..+..+...++++.|
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E-----~~AI~ll~~aL~~~p~d~~LL~-~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE-----VEAIRLLNEALKENPQDSELLN-LQAEFLLSKKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH-----HHHHHHHHHHHHhCCCCHHHHH-HHHHHHHhcCCHHHH
Confidence 5789999999999999976 555677777766542 3899999999999999999994 688899999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+.+.++++.+.|.+...|+.++.+|..+| +++.|+-.+..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~-d~e~ALlaLNs 293 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLG-DFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcC-CHHHHHHHHhc
Confidence 99999999999999999999999999999 59999977664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=71.82 Aligned_cols=143 Identities=10% Similarity=0.080 Sum_probs=110.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~ 119 (235)
.|+|.+|+..|++++...|.. +.+.+.+|.++...|++. +|+..++..++..|+++. ++ +.+|.+...
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~-----~A~~~~~~fi~~yP~~~~~~~A~-Y~~g~~~~~ 91 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYE-----EAIAAYERFIKLYPNSPKADYAL-YMLGLSYYK 91 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HH-----HHHHHHHHHHHH-TT-TTHHHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCCcchhhHH-HHHHHHHHH
Confidence 489999999999999998875 689999999999999875 799999999999999996 66 678887654
Q ss_pred c-----------cccHHHHHHHHHHHHcCCCChHHHHHH-----------------HHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 120 G-----------EKSERALALTADAITMNPANYTVWQYR-----------------REILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 120 ~-----------~~~~eAl~~~~~al~l~P~~~~aw~~r-----------------~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
. +...+|+..|+..+...|++..+---+ |..+.+.| .+..|+.-++.+|+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~-~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG-KYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHH
Confidence 3 235799999999999999998875432 22233334 488999999999999
Q ss_pred CCCChH---HhHHHHHHHHHcCCchHH
Q psy4772 172 NSKNYQ---VWRHRQIIVEWMGEPDEE 195 (235)
Q Consensus 172 ~P~n~~---aw~~r~~~l~~l~~~~~A 195 (235)
.|+... ++..++.++.++|..+.|
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 999876 677788888888887733
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=62.96 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=58.0
Q ss_pred HHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 152 ~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
...| ++++|+..+++++..+|+|..+++.++.++...|++++|...+++++..+|+++..+.-++
T Consensus 2 l~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQG-DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTT-HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhcc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3456 4999999999999999999999999999999999999999999999999999977665544
|
... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=82.58 Aligned_cols=170 Identities=8% Similarity=0.016 Sum_probs=105.9
Q ss_pred HHHHHHHHHhHHhcCC--CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 49 FSDELSYIEGLISHDV--RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P--~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
-+.++.-++..+.-.. .++......|.++...|++ ++|+..+.+. .+.++. ...-.|+..+++.+.|
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~-----~~AL~~l~~~-----~~lE~~-al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDY-----EEALKLLHKG-----GSLELL-ALAVQILLKMNRPDLA 150 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH-----HHHHCCCTTT-----TCHHHH-HHHHHHHHHTT-HHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH-----HHHHHHHHcc-----CcccHH-HHHHHHHHHcCCHHHH
Confidence 3455555544443322 2444445555666655544 3455544432 233333 1233566677788888
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+.++.+-+.+.+..-....-+|+....|. .+.+|..+|+++....|.++...+.++.+...+|++++|.+.+..|+..
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888887777777776666666666666552 3677888888877777777788888888888888888888888888888
Q ss_pred CCCChHHhHHHHHHHhhcCCcccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+|+++.++.|+..+-.++|+.++.
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhH
Confidence 888888888877777777777443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=79.98 Aligned_cols=155 Identities=8% Similarity=-0.000 Sum_probs=120.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc--ccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG--EKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~--~~~ 123 (235)
.|++++|+..+.+. ++.++...+-.++..++|.+ -|...++++-+.+.+..-.- ..-+++.... +.+
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~d-----lA~k~l~~~~~~~eD~~l~q-La~awv~l~~g~e~~ 183 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPD-----LAEKELKNMQQIDEDSILTQ-LAEAWVNLATGGEKY 183 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HH-----HHHHHHHHHHCCSCCHHHHH-HHHHHHHHHHTTTCC
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCcHHHHH-HHHHHHHHHhCchhH
Confidence 47889999777654 67788878888888888875 57777777777765544322 3344444333 469
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch-HHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD-EELALTAAI 202 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~-~Al~~~~~a 202 (235)
++|...|+......|..+..++.++.+...+| +|++|...+++++..+|+++.+..+++.+...+|+.. .+-+++...
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999 4999999999999999999999999999999999984 455678888
Q ss_pred HHhCCCChHH
Q psy4772 203 LAQDAKNYHA 212 (235)
Q Consensus 203 i~ldp~n~~a 212 (235)
-..+|.++..
T Consensus 263 ~~~~p~h~~~ 272 (290)
T PF04733_consen 263 KQSNPNHPLV 272 (290)
T ss_dssp HHHTTTSHHH
T ss_pred HHhCCCChHH
Confidence 8899998754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-07 Score=76.86 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=81.2
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCc
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~ 192 (235)
.|..+....+|.+|+.+|.++|.++|..+..|.+|+.|+.+++ +|+.....+.++++++|+...+.+.+|..+.....+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 4566677778899999999999999999999999999999988 599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q psy4772 193 DEELALTAAILAQ 205 (235)
Q Consensus 193 ~~Al~~~~~ai~l 205 (235)
.+++..+.+|..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-06 Score=83.66 Aligned_cols=169 Identities=8% Similarity=0.051 Sum_probs=139.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--IAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|...|+.. +.+...|..+...+...|+.+ +|++.|++..+ ..|+..+-. ..+ ..+...|..
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~-----~A~~lf~~M~~~g~~Pd~~T~~-~ll-~a~~~~g~v 605 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGS-----MAVELFNRMVESGVNPDEVTFI-SLL-CACSRSGMV 605 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCCcccHH-HHH-HHHhhcChH
Confidence 57889999999886 778999999999999999864 79999998877 567777654 233 567778999
Q ss_pred HHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|+..|+...+..+- +...|.....++.+.| .+++|.+++++. ...|+ ...|..+..++...++.+.+....++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G-~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG-KLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC-CHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999854332 3467788889999999 499999999885 34554 77899988888889999999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
+++++|++...+..+++++...|+-.+
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 999999999999999999877777544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-07 Score=74.33 Aligned_cols=104 Identities=9% Similarity=0.043 Sum_probs=66.0
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+..++.||..+-++|-.. =|--+|.++|.+.|+-+.+.| .+|.-+...|.++-|++.|+.+++++|.+-.|..
T Consensus 64 RA~l~fERGvlYDSlGL~~-----LAR~DftQaLai~P~m~~vfN-yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRA-----LARNDFSQALAIRPDMPEVFN-YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHHHHHHhcchhhhhhHHH-----HHhhhhhhhhhcCCCcHHHHH-HHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 3455666666666665322 244556666777777777665 3666666666677777777777777777777767
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+||..+...|+ +.-|...+.+.-+-||+++
T Consensus 138 NRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 138 NRGIALYYGGR-YKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ccceeeeecCc-hHhhHHHHHHHHhcCCCCh
Confidence 77666666663 6666666666666666655
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=71.84 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=129.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|.+.-|--.|.++|++.|+-+++++.+|.-+...|+|+ .|.+.|+.+++++|..-=+. .+||..+.-.|+++-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd-----aa~eaFds~~ELDp~y~Ya~-lNRgi~~YY~gR~~L 151 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD-----AAYEAFDSVLELDPTYNYAH-LNRGIALYYGGRYKL 151 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch-----HHHHHhhhHhccCCcchHHH-hccceeeeecCchHh
Confidence 456778888999999999999999999999999999987 68999999999999998888 579999999999999
Q ss_pred HHHHHHHHHHcCCCChH--HHHHHHH-------HHHHhhHh--------H-----------HHHHHHHHHHHHhCCCCh-
Q psy4772 126 ALALTADAITMNPANYT--VWQYRRE-------ILKALNKD--------L-----------HQELKYIGEKIKENSKNY- 176 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~--aw~~r~~-------~l~~l~~~--------~-----------eeal~~~~~al~~~P~n~- 176 (235)
|.+.+.+--.-+|+++- .|.+.-. +-.+|.++ | -..-..++++..-..+|.
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 99999998888888874 3443210 00011000 0 012234455554444443
Q ss_pred ------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 177 ------QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 177 ------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
.+++++|..+..+|..++|...|+-|+.-+.-|.--+.|-..-+..+|-.
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~ 287 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQD 287 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 47888999999999999999999999987766665544444444555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=81.63 Aligned_cols=172 Identities=9% Similarity=0.051 Sum_probs=126.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--IAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|...|++..+ .+...|+.+...+.+.|+.+ +|++.|++.+. ..|+..+.- ..-..+...|..
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~-----~A~~lf~~M~~~g~~Pd~~T~~--~ll~a~~~~g~~ 442 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGT-----KAVEMFERMIAEGVAPNHVTFL--AVLSACRYSGLS 442 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCCHHHHH--HHHHHHhcCCcH
Confidence 4677888888877654 35677888888888777653 68888887765 344444322 233456677888
Q ss_pred HHHHHHHHHHHHcCC--CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNP--ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P--~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|+..|+...+..+ .+...|.....++.+.| .+++|.+++++. ... -+...|..+..++...|+.+.+...+++
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G-~~~eA~~~~~~~-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREG-LLDEAYAMIRRA-PFK-PTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC-CHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 888888888876432 23345677778888888 489999888764 222 3556799999999999999999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+++++|.+...|..+..++...|+-.++.
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999888888887777765543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-05 Score=70.20 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=106.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+|++|+..-++..++.|+....-.-.-.|-..+.-..++..++|+..+.||++-||++..+= ..+|.+....|+|+.|
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs-i~lG~v~~~~g~y~~A 233 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS-IILGRVELAKGDYQKA 233 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh-hhhhHHHHhccchHHH
Confidence 467778877777777777765332211111111111122345578888888888888888876 5778888888888888
Q ss_pred HHHHHHHHHcCCCChH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
++.++.+++.||.+.. +.--+..||..+|+ .++.+.++.++.+.++... +-.-+..+.....-.+.|-....+-+..
T Consensus 234 V~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 234 VEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 8888888888888754 55556777888884 7888888888877766543 3334444455555566777777777777
Q ss_pred CCCChH
Q psy4772 206 DAKNYH 211 (235)
Q Consensus 206 dp~n~~ 211 (235)
+|.-.-
T Consensus 312 ~Pt~~g 317 (389)
T COG2956 312 KPTMRG 317 (389)
T ss_pred CCcHHH
Confidence 776544
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=67.06 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=55.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----hhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----PWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----aw~~~~g~il~~~~~ 122 (235)
|+.++|++.|.++|.+.|++++++++|+..+..+|+-+ +|++.+++++++...... ++ ..+|.++..+|+
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e-----~ALdDLn~AleLag~~trtacqa~-vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDE-----EALDDLNKALELAGDQTRTACQAF-VQRGLLYRLLGN 130 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH-----HHHHHHHHHHHhcCccchHHHHHH-HHHHHHHHHhCc
Confidence 45677777777777777777777777777777766543 567777777776655442 34 246666666666
Q ss_pred cHHHHHHHHHHHHcCCC
Q psy4772 123 SERALALTADAITMNPA 139 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~ 139 (235)
.+.|...|+.+.++-.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 66666666666554433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-05 Score=77.98 Aligned_cols=171 Identities=8% Similarity=-0.018 Sum_probs=94.3
Q ss_pred hcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHhccccc
Q psy4772 47 NLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--APKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--~p~~~~aw~~~~g~il~~~~~~ 123 (235)
|++++|++.|+...+.+ +.+...|..+...+.+.|+++ +|+..|....+. .|+ ...|+ .+...+.+.|++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d-----eAl~lf~eM~~~Gv~PD-~~Tyn-sLI~a~~k~G~~ 665 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD-----FALSIYDDMKKKGVKPD-EVFFS-ALVDVAGHAGDL 665 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCC-HHHHH-HHHHHHHhCCCH
Confidence 45566666666666554 345555666666666655543 466666655554 333 22332 233455556666
Q ss_pred HHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKE-NSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|++.++.+.+.. +-+...|+....+|.+.| .+++|+..|++.... -..+..+|+.+...+.+.|++++|++.++.
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G-~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666666543 334556666666666666 366666666665442 122455666666666667777777776666
Q ss_pred HHHh--CCCChHHhHHHHHHHhhcCCc
Q psy4772 202 ILAQ--DAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 202 ai~l--dp~n~~aw~~r~~~l~~l~~~ 226 (235)
.... .| |..+|..+...+...|+.
T Consensus 745 M~~~Gi~P-d~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 745 MKRLGLCP-NTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHcCCCC-CHHHHHHHHHHHHHCCCH
Confidence 5543 23 333444444444444443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-05 Score=77.82 Aligned_cols=173 Identities=8% Similarity=0.008 Sum_probs=108.0
Q ss_pred hcHHHHHHHHHhHHhc----CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC-CCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISH----DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA-PKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~----~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~-p~~~~aw~~~~g~il~~~~ 121 (235)
|++++|.+.++..... .|+ ...|..+-.++.+.|++ ++|++.|+.+.+.+ +-+...|+ .+...+.+.|
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~l-----deA~elf~~M~e~gi~p~~~tyn-sLI~ay~k~G 628 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQV-----DRAKEVYQMIHEYNIKGTPEVYT-IAVNSCSQKG 628 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHcCCCCChHHHH-HHHHHHHhcC
Confidence 4556666666665542 232 34555555555555554 35667777766665 33445664 3446666677
Q ss_pred ccHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 122 KSERALALTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKNYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 122 ~~~eAl~~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
+.++|+..|++..+. .|+ ...|+.....+.+.| .+++|+..+++.++.. +-+..+|+.+...+.+.|++++|++.
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G-~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG-DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 777777777777665 343 456666666666677 4777777777777654 34566777777777888888888888
Q ss_pred HHHHHHh--CCCChHHhHHHHHHHhhcCCcccc
Q psy4772 199 TAAILAQ--DAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 199 ~~~ai~l--dp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
|+..... .| +..+|..+...+...|+..+|
T Consensus 707 f~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 707 YEDIKSIKLRP-TVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 7776543 34 456677766666555555444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=77.57 Aligned_cols=166 Identities=9% Similarity=0.060 Sum_probs=120.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--APKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|...|+.. .+.+...|..+...+...|+.+ +|+..|.+.... .|+.. .++ .+..++.+.|.+
T Consensus 272 ~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~-----eA~~lf~~M~~~g~~pd~~-t~~-~ll~a~~~~g~~ 341 (697)
T PLN03081 272 CGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSIDQF-TFS-IMIRIFSRLALL 341 (697)
T ss_pred CCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHH-----HHHHHHHHHHHcCCCCCHH-HHH-HHHHHHHhccch
Confidence 57789999999865 4568889999999999988764 688888887653 34433 342 345667778888
Q ss_pred HHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 124 ERALALTADAITMN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 124 ~eAl~~~~~al~l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
++|.+.+..+++.. +.+..+++.+...|.+.| .+++|...|++..+ .|..+|+.+...+.+.|+.++|++.|++.
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC-CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888876 667777888888888888 48888888887654 36678888888888888888888888887
Q ss_pred HHh--CCCChHHhHHHHHHHhhcCCc
Q psy4772 203 LAQ--DAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 203 i~l--dp~n~~aw~~r~~~l~~l~~~ 226 (235)
+.. .|+ ..++.....++...|+-
T Consensus 418 ~~~g~~Pd-~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 418 IAEGVAPN-HVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHhCCCCC-HHHHHHHHHHHhcCCcH
Confidence 763 343 33344444434444433
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=4e-06 Score=77.40 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC--ChHHH-HHHHHHHHHhhHhHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA--NYTVW-QYRREILKALNKDLHQEL 162 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~--~~~aw-~~r~~~l~~l~~~~eeal 162 (235)
+.+++|++.++++|...|+..++. +.+=.++...++|++||. .++.++. -.... ++++.|.+++++ .++|+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~-~cKvValIq~~ky~~ALk----~ikk~~~~~~~~~~~fEKAYc~Yrlnk-~Deal 99 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAI-RCKVVALIQLDKYEDALK----LIKKNGALLVINSFFFEKAYCEYRLNK-LDEAL 99 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhH-hhhHhhhhhhhHHHHHHH----HHHhcchhhhcchhhHHHHHHHHHccc-HHHHH
Confidence 456799999999999999999999 566677888999999994 4555553 11122 799999999995 89999
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 163 KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 163 ~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
.+++ ..++....+..-++.+++++|+|++|++.|+..++-+.++...
T Consensus 100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 9999 5666667789999999999999999999999998877666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=61.98 Aligned_cols=84 Identities=12% Similarity=-0.014 Sum_probs=54.1
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--HHHHHHHhcccccHHHHHHHHHHHHcCCCChH--
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN--YLRGAVVNAGEKSERALALTADAITMNPANYT-- 142 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~--~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~-- 142 (235)
+..++..|.-.+..|+|. +|++.+..+....|-..-+=. ..+|.++...+++++|+..+++.|+++|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~-----~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYE-----EAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHHHHHHhCCHH-----HHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 455666666666666654 567777777777666653321 23566667777777777777777777776654
Q ss_pred -HHHHHHHHHHHhh
Q psy4772 143 -VWQYRREILKALN 155 (235)
Q Consensus 143 -aw~~r~~~l~~l~ 155 (235)
|++.+|.+.....
T Consensus 85 Ya~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 85 YAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHHHh
Confidence 6666776666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=61.67 Aligned_cols=101 Identities=10% Similarity=-0.030 Sum_probs=89.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH---HhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYT---VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ---VWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~---aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~---aw~~r~~ 184 (235)
+..|.-....|+|++|++.++.+....|-... |...++.++..-+ .+++|+..+++.|+++|.++. +++.+|+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 67888888999999999999999999887654 6667888888888 599999999999999999886 8999999
Q ss_pred HHHHcCC---------------chHHHHHHHHHHHhCCCChHH
Q psy4772 185 IVEWMGE---------------PDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 185 ~l~~l~~---------------~~~Al~~~~~ai~ldp~n~~a 212 (235)
+...+.. ..+|+..|+..|..-|++..+
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9988765 679999999999999998765
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-06 Score=78.82 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=88.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.|+.|+..|.+||.++|.++..+-+|+.+....+.|. .|+.++.++|+++|....++ +++|.....++++.+|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~-----~Al~Da~kaie~dP~~~K~Y-~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG-----GALHDALKAIELDPTYIKAY-VRRGTAVMALGEFKKA 91 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh-----hHHHHHHhhhhcCchhhhee-eeccHHHHhHHHHHHH
Confidence 57899999999999999999999999999999888775 79999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRRE 149 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~ 149 (235)
+..+++...+.|+.+.+---...
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHH
Confidence 99999999999999988544333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-07 Score=52.14 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=20.4
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
|+++|+++|+|+.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.4e-05 Score=67.19 Aligned_cols=175 Identities=8% Similarity=-0.043 Sum_probs=122.1
Q ss_pred hcHHHHHHHHHhHHhcCCCch-hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNN-SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~-~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+|..|+.+++-.+.++.+-. +.-.-.|.|.+.+|+|. +|++.|..+.+.+.-....| .+++.+..-+|.|.+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~-----~Al~~Y~~~~~~~~~~~el~-vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE-----EALNVYTFLMNKDDAPAELG-VNLACCKFYLGQYIE 109 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH-----HHHHHHHHHhccCCCCcccc-hhHHHHHHHHHHHHH
Confidence 466888888888877765544 33344677778887764 67888888877777777777 467788888888888
Q ss_pred HHHHHHHHHHcCCCChH---HHHHHH-----------------HHHHHh---------hHhHHHHHHHHHHHHHhCCCCh
Q psy4772 126 ALALTADAITMNPANYT---VWQYRR-----------------EILKAL---------NKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~---aw~~r~-----------------~~l~~l---------~~~~eeal~~~~~al~~~P~n~ 176 (235)
|-....++ |+.+- ..+|.+ ..++.. ...+.+|++.|.+++.-+|...
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 76644433 33322 222211 111000 0147889999999999888888
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH--hhcCCcccccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI--NLLDDDDRGVL 231 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l--~~l~~~~~~~~ 231 (235)
..-.+++.++.++.=++-+.+.++.-+...|+..-|-+-+...+ .+-|+.+++|.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 88888999999999889889999999999999998887777666 46666666553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00018 Score=63.83 Aligned_cols=179 Identities=8% Similarity=-0.016 Sum_probs=128.7
Q ss_pred hhhhcHHHHHHHHHhHHhcCCC-chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVR-NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~-~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+.+|+++.+-.++.++=++.|+ .-.+...+..++...|++. .|......++...|+++.... ..-.++...|.
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~-----aA~~~v~~ll~~~pr~~~vlr-La~r~y~~~g~ 202 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP-----AARENVDQLLEMTPRHPEVLR-LALRAYIRLGA 202 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch-----hHHHHHHHHHHhCcCChHHHH-HHHHHHHHhcc
Confidence 4578888888888888888444 3566778888888888775 577888899999999999885 45578888888
Q ss_pred cHHHHHHHHHHHHcC---CCChHHHHHHHHH---------------------------------------HHHhhH----
Q psy4772 123 SERALALTADAITMN---PANYTVWQYRREI---------------------------------------LKALNK---- 156 (235)
Q Consensus 123 ~~eAl~~~~~al~l~---P~~~~aw~~r~~~---------------------------------------l~~l~~---- 156 (235)
+++.+..+.+.-+-. +....-+-+.++. +..+|.
T Consensus 203 ~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 203 WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHH
Confidence 877776666554421 1111111111100 000110
Q ss_pred --------------------------hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 157 --------------------------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 157 --------------------------~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+.+.=++..++.++.+|.++..+..+|.++.+.+.+.+|-++++.||..-|. .
T Consensus 283 ~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~ 361 (400)
T COG3071 283 QEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-A 361 (400)
T ss_pred HHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-h
Confidence 1233445577888899999999999999999999999999999999999886 4
Q ss_pred HHhHHHHHHHhhcCCcccc
Q psy4772 211 HAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 211 ~aw~~r~~~l~~l~~~~~~ 229 (235)
+.|..++.++..+|..-++
T Consensus 362 ~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 362 SDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhHHHHHHHHHHcCChHHH
Confidence 6788999999888887544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=60.00 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-------CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKEN-------SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-------P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+++++|.++..+|+ +++|+.++++++++. |.-..+++++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555555555552 555555555555321 112335555555555566666666665555543
|
... |
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-06 Score=77.97 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
++..|+..|.|||.++|++...+. .|+..+.+.+.+..|+....++++++|....+++.||.+...+++ +.+|+..++
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~a-nRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-~~~A~~~l~ 96 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFA-NRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-FKKALLDLE 96 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeec-hhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-HHHHHHHHH
Confidence 456788888888888888888884 677788888888888888888888888888888888888888885 888888888
Q ss_pred HHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 167 EKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
......|+.+.+--...-+-.. -...-|++++-.++.+...
T Consensus 97 ~~~~l~Pnd~~~~r~~~Ec~~~-----vs~~~fe~ai~~~~~d~~s 137 (476)
T KOG0376|consen 97 KVKKLAPNDPDATRKIDECNKI-----VSEEKFEKAILTPEGDKKS 137 (476)
T ss_pred HhhhcCcCcHHHHHHHHHHHHH-----HHHHhhhhcccCCccCCcc
Confidence 8888888887654332222111 1122355566655555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=51.59 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
.+|..++.++..+|++++|++.++++++.+|+|..+|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 35555666666666666666666666666666666665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-06 Score=59.36 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=41.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHc----C---CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 112 LRGAVVNAGEKSERALALTADAITM----N---PANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l----~---P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.+|.++..+|++++|+.+|++++.+ . |.-..+++++|.++..+|+ +++|+.++++++++
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i 75 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 5677777777777777777777754 1 2235567778888888884 88888888888775
|
... |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=65.46 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=89.0
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHH------------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAIT------------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~------------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
...|+-+.+.|+|+||..+|..|+. ++-.....+.+...|+...+ .|-++++.+..+|+.+
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-EYYEVLEHCSEILRHH 260 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH-HHHHHHHHHHHHHhcC
Confidence 4678888888999998888887763 34445556777888998888 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
|.|..|++-|+.+.-..=+..+|...+.+++++||.-.++-.-
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999999889999999999999999998887443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.5e-05 Score=63.45 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=74.7
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh---HH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPANY---TV 143 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~---~a 143 (235)
.|+.+.-++..|+|. .|.+.|.+-++.-|+.. .|. |-+|.++..+|++++|...|..+++-.|+++ ++
T Consensus 144 ~Y~~A~~~~ksgdy~-----~A~~~F~~fi~~YP~s~~~~nA~-yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYA-----EAEQAFQAFIKKYPNSTYTPNAY-YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCcccchhH-HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH
Confidence 555666666667664 57777777777777765 344 4467777778888888888887777665554 56
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
++.+|.++.++++ -++|-..++++++.+|+...+-.-+
T Consensus 218 llKlg~~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 218 LLKLGVSLGRLGN-TDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 7777888888874 6778888888888888777665544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.9e-06 Score=47.46 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|+++|.++..+|++++|+++|++||+++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-06 Score=49.13 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHH
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQEL 162 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal 162 (235)
|+++|+++|+++.+|+++|.+|...| ++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g-~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG-DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc-CHHhhc
Confidence 45566666666666666666666655 355543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=49.49 Aligned_cols=41 Identities=10% Similarity=0.295 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
.+|..++.++..+| ++++|+..++++++.+|+|+.+|..++
T Consensus 2 ~~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555566666666 356666666666666666666665554
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=67.12 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=76.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
..|.+|+..|.+||.++|-.+.-|.+|+.+++.+.+++ ...+++.++++++|+...+. +.+|..+.....|.+|
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~-----~v~~dcrralql~~N~vk~h-~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE-----PVEEDCRRALQLDPNLVKAH-YFLGQWLLQSKGYDEA 97 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh-----hhhhhHHHHHhcChHHHHHH-HHHHHHHHhhccccHH
Confidence 35799999999999999999999999999999988775 57899999999999999999 7899999999999999
Q ss_pred HHHHHHHHH
Q psy4772 127 LALTADAIT 135 (235)
Q Consensus 127 l~~~~~al~ 135 (235)
+....++..
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 999999954
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.2e-05 Score=66.81 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=110.0
Q ss_pred hcHHHHHHHHHhHHhcCCC------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVR------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYLRG 114 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~~g 114 (235)
++|++|..+|.++..+.-+ -+.++...+.++... ..++|++.+.+++.+--... .+. ...|
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~------~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~-~~lA 121 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG------DPDEAIECYEKAIEIYREAGRFSQAAKCL-KELA 121 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHH
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHH
Confidence 5677888888777665432 234455555555444 23578899998888633332 234 3577
Q ss_pred HHHhcc-cccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC----h---HHhH
Q psy4772 115 AVVNAG-EKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN----Y---QVWR 180 (235)
Q Consensus 115 ~il~~~-~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n----~---~aw~ 180 (235)
.++... |++++|+++|++|+++.-.. .......+.++..++ +|++|+..|++++...-.+ + ..+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 888887 99999999999999873222 224456788888888 4999999999998854322 2 2344
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
..+.++...|++..|...+++....+|...+.=-+
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 56667788999999999999999999988776443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00018 Score=71.26 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=53.1
Q ss_pred CCchhhHHHHHHHhcccccHHHHHHHHHHHH--cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhH
Q psy4772 105 NESPWNYLRGAVVNAGEKSERALALTADAIT--MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWR 180 (235)
Q Consensus 105 ~~~aw~~~~g~il~~~~~~~eAl~~~~~al~--l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~ 180 (235)
+..+|| .+...+...|+.++|++.|++..+ ..|+..+ +...-..+.+.| .+++++.+++...+..+- +...|.
T Consensus 553 d~~s~n-~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g-~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 553 DVVSWN-ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSG-MVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred ChhhHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcC-hHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 444453 333445555555556655555554 2344333 222223344445 256666666655533222 224555
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.+..++.+.|++++|.+.+++. .+.|+ ...|..+-..+
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence 5555566666666666665553 23332 44454444444
|
|
| >PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=45.89 Aligned_cols=28 Identities=43% Similarity=0.891 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 195 ELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 195 Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+++++..+|..+|+|+++|.||.++++.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4555555555555555555555555543
|
Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A .... |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=68.92 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=90.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
-+.|++|++.+++.++..|+...|...+|.++.++|+++ +|..+.+..=..-|.+..... .+-.|+..++++++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~-----ea~~~Le~~~~~~~~D~~tLq-~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD-----EALKLLEALYGLKGTDDLTLQ-FLQNVYRDLGKLDE 95 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch-----hHHHHHhhhccCCCCchHHHH-HHHHHHHHHhhhhH
Confidence 356777777777777777777777777777777777776 466555544445555555553 34466777777777
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-HhHHHHHHHHHcCCchHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-VWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-aw~~r~~~l~~l~~~~~Al~ 197 (235)
|+.+|++++..+|+ ..-..+...++.+-+ .|.+--+.--+.-+..|+++. -|.-.+.++......++...
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~-~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREK-SYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc
Confidence 77777777777777 666666666666665 244333322233335666654 45555555555555544443
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=62.50 Aligned_cols=132 Identities=12% Similarity=0.183 Sum_probs=101.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHH----HcCCCChHHHHHHHHH
Q psy4772 75 FVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAI----TMNPANYTVWQYRREI 150 (235)
Q Consensus 75 ~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al----~l~P~~~~aw~~r~~~ 150 (235)
.++...|+|. =.+..++++++.+|..-.+....+|.+....|+.+.|-..|+.+- .++.--.....++...
T Consensus 185 ~~llG~kEy~-----iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 185 NCLLGMKEYV-----LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHhcchhhh-----hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444455553 578889999999966666665678889889999999988888443 3443333333344444
Q ss_pred HHHhh-HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 151 LKALN-KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 151 l~~l~-~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+..+| +++.+|..++++.+..||.++.+-++++.++.-+|+..+|++..+.++.++|..+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 44443 25899999999999999999999999999999999999999999999999998653
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=63.89 Aligned_cols=146 Identities=7% Similarity=-0.047 Sum_probs=109.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHH--HHH-------HHHHHHHHHhCCCCCc--hh----
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI--QRE-------IDYCRDKIQIAPKNES--PW---- 109 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~--~~A-------l~~~~kal~l~p~~~~--aw---- 109 (235)
.+|+|++|+..|..+.+.+.-+.+.|.+++.+.+.+|+|.++.. ++| --.|.-+.+++-+.-. .+
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999875310 000 0011122222211100 00
Q ss_pred -----hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 110 -----NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQI 184 (235)
Q Consensus 110 -----~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~ 184 (235)
...++.+...+-.|+||++.|+++|.-+|+....=.+.+.|+.+|. .++-+.+.++--++..|+++-|-+.++-
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 0112334444556899999999999999999998899999999998 5899999999999999999999999998
Q ss_pred HHHHcCC
Q psy4772 185 IVEWMGE 191 (235)
Q Consensus 185 ~l~~l~~ 191 (235)
.+.++-+
T Consensus 228 n~fRl~n 234 (557)
T KOG3785|consen 228 NLFRLIN 234 (557)
T ss_pred HHhhhhc
Confidence 8877654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=45.90 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.+|+++|.++..+++ +++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD-YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcC
Confidence 456666666666663 66666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=45.09 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
.+|+++|.++..+|++++|+.++++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00016 Score=61.47 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=93.9
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh---HHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANY---TVWQYRREILKALNKDLHQELKYIGEKIKENSKNY---QVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~---~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~---~aw~~r~~ 184 (235)
|..+.-+...|+|.+|...|..-+...|++. .|.+.+|.++...| ++++|...|-.+++..|+++ .+.+.+|.
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4566777788999999999999999999875 58999999999999 59999999999999888665 67999999
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
++..+|+.++|-..++.++..-|+...+-.-+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999998875443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00064 Score=67.41 Aligned_cols=176 Identities=13% Similarity=-0.020 Sum_probs=103.3
Q ss_pred hhcHHHHHHHHHhHHhcCCC---------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-----chhhH
Q psy4772 46 CNLFSDELSYIEGLISHDVR---------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-----SPWNY 111 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~---------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-----~aw~~ 111 (235)
.++++++...++.+...-+. ...+...+|.+....|+++ +|...+..++...|... .++ .
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~a~-~ 495 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPE-----EAERLAELALAELPLTWYYSRIVAT-S 495 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHhcCCCccHHHHHHHH-H
Confidence 35667777777776654221 1234445566666666654 56777777776544432 123 2
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--------ChH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSK--------NYQ 177 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--------n~~ 177 (235)
.+|.++...|++++|+..+.+++...... ..++..++.++...| ++++|...+++++.+-.. ...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 45666677777777777777777653321 124455667777777 477777777777664211 122
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCC-----ChHHhHHHHHHHhhcCCccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAK-----NYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~-----n~~aw~~r~~~l~~l~~~~~ 228 (235)
++..++.++...|++++|...+.+++.+... ...++..++.+....|+...
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH
Confidence 3445666777777777777777777665322 23334445555555555433
|
|
| >PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.8e-05 Score=44.26 Aligned_cols=29 Identities=24% Similarity=0.673 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 161 ELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
++++...+|..+|+|+++|++|.+++.++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45566666666666666666666665543
|
Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A .... |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-06 Score=73.75 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
+||+.|..+|.++|.....+. .|+.++.++++...|+..|..+|++||+...-+-.|+....-|| .|++|-..+..++
T Consensus 132 ~ai~~~t~ai~lnp~~a~l~~-kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg-~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 132 TAIELFTSAIELNPPLAILYA-KRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG-NWEEAAHDLALAC 209 (377)
T ss_pred hhhcccccccccCCchhhhcc-cccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh-chHHHHHHHHHHH
Confidence 566666666666666666552 45666666666666666666666666666666666666666666 3666666666666
Q ss_pred HhCC
Q psy4772 170 KENS 173 (235)
Q Consensus 170 ~~~P 173 (235)
+++-
T Consensus 210 kld~ 213 (377)
T KOG1308|consen 210 KLDY 213 (377)
T ss_pred hccc
Confidence 6554
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.5e-05 Score=68.89 Aligned_cols=182 Identities=9% Similarity=0.038 Sum_probs=135.3
Q ss_pred hhcHHHHHHHHHhHHhcCCC------chhHhhhHHHHHhhcCCCC---------------HHHHHHHHHHHHHHHHhCCC
Q psy4772 46 CNLFSDELSYIEGLISHDVR------NNSAWTQRYFVINHTTQFT---------------PEVIQREIDYCRDKIQIAPK 104 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~------~~~a~~~~g~~l~~~~~~~---------------e~~~~~Al~~~~kal~l~p~ 104 (235)
.|.|++|+.++.+-|.+..+ -.-|+|++|.|+...|+-- .+.++.|+++|..-|++...
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999998887766443 3578999999998887521 14688899999988887766
Q ss_pred CCc------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-
Q psy4772 105 NES------PWNYLRGAVVNAGEKSERALALTADAITMNPANY------TVWQYRREILKALNKDLHQELKYIGEKIKE- 171 (235)
Q Consensus 105 ~~~------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~------~aw~~r~~~l~~l~~~~eeal~~~~~al~~- 171 (235)
... ++. ++|..+..+|+++.|+..-+.-|++.-.+- -|+.++|.++.-+|+ ++.|+++|++++.+
T Consensus 188 lgDr~aqGRa~G-nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 188 LGDRLAQGRAYG-NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTLNLA 265 (639)
T ss_pred hhhHHhhcchhc-ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHHHHH
Confidence 543 443 466777778999999998888777654433 378889999999995 99999999986542
Q ss_pred ---CC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHHhhcCCcccc
Q psy4772 172 ---NS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 172 ---~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
-. --.+.-|.+|..+.-+..+++|+++..+-+.+- ..-..+..-+|.+.+.+|.-.+|
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 22 234677889999999999999999988876543 33455666778888777765443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00075 Score=54.70 Aligned_cols=136 Identities=7% Similarity=0.014 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAIT-MNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~-l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
+++.-..+.+.+.|....- +++|..+.++|++.||...|++++. +.-.++.....++.....++ ++..+...++++
T Consensus 74 R~~Rea~~~~~~ApTvqnr--~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~-~~A~a~~tLe~l 150 (251)
T COG4700 74 RHLREATEELAIAPTVQNR--YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ-EFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHHHhhchhHHHH--HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 4555566777777877664 4689999999999999999999986 67888899999999999999 499999999999
Q ss_pred HHhCC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 169 IKENS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 169 l~~~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
.+-+| ..++...-.+.++..+|++..|...|+.++.--|+...- .+.+..|...|+.+++
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar-~~Y~e~La~qgr~~ea 212 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR-IYYAEMLAKQGRLREA 212 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH-HHHHHHHHHhcchhHH
Confidence 99988 456677778889999999999999999999999986554 5555556666766543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00058 Score=67.74 Aligned_cols=155 Identities=11% Similarity=-0.007 Sum_probs=119.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCch-----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN-----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLRG 114 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~-----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~g 114 (235)
.|++++|...++.++...|... .++..+|.++...|+++ +|...+.+++........ ++ ..+|
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~-----~A~~~~~~al~~~~~~g~~~~~~~~~-~~la 538 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA-----RALAMMQQTEQMARQHDVYHYALWSL-LQQS 538 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHhhhcchHHHHHHH-HHHH
Confidence 4789999999999998655532 45678888888899875 688888888876544322 23 2467
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCC--------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-----ChHHhHH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPA--------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSK-----NYQVWRH 181 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~--------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~-----n~~aw~~ 181 (235)
.++...|++++|...+.+++.+... ...++..++.++...| ++++|...+++++..... ...++..
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 8888899999999999999886222 2334567788898999 599999999999875332 3456667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
++.+....|++++|...+.+++.+.+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 88899999999999999999977643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0017 Score=57.78 Aligned_cols=153 Identities=7% Similarity=0.010 Sum_probs=117.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH----------------------------------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------------- 85 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------------- 85 (235)
.+++..|..-.+.++...|.++.+..-.-.++...|.+.+
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 4789999999999999999999999999999999987532
Q ss_pred -------------------------------HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHH
Q psy4772 86 -------------------------------EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAI 134 (235)
Q Consensus 86 -------------------------------~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al 134 (235)
...++|.+....+|+..-+.- . ... .-....++...=++..++.+
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L-~~~-~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--L-CRL-IPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--H-HHH-HhhcCCCCchHHHHHHHHHH
Confidence 023333344444443322211 1 111 11122355666677888888
Q ss_pred HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 135 TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 135 ~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+..|+++..+..+|..+.+-+ .|.+|-.+++.+|..-|. .+.|..++.++.++|+..+|-++.+.++.
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 899999999999999999998 599999999999998876 56889999999999999999999999884
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=60.41 Aligned_cols=168 Identities=8% Similarity=0.031 Sum_probs=107.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC---CCC---chh-----------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP---KNE---SPW----------- 109 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p---~~~---~aw----------- 109 (235)
.+...-++.-.+||+++|++++||.-++-=-...-.-.+..+++|++.-+..+..+. .+. ..+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 356788889999999999999999877642221111111223334433333333322 111 111
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCCChHHhHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKE-NSKNYQVWRHRQIIV 186 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-~P~n~~aw~~r~~~l 186 (235)
-.+++.|..++|+.+||++.+...++.+|. +..+..++-.++..++. +.++...+.+-=.+ -|++...-+.++.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 134688889999999999999999998875 44577777788888874 77777666664332 255666556565544
Q ss_pred HH-cCC---------------chHHHHHHHHHHHhCCCChHHhHH
Q psy4772 187 EW-MGE---------------PDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 187 ~~-l~~---------------~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
.+ .++ -..|++.+.+|++.+|-.+....-
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 33 222 135789999999999988875433
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.9e-05 Score=42.92 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.+|+++|.++..+|+ +++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence 456666666666663 666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00074 Score=65.34 Aligned_cols=139 Identities=9% Similarity=0.073 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
..+++|++.+.++++..|+..-+- ..+|.++.++|+.++|+.+.+..-..-|.+-..+.....||..+++ ++++..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~-vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAK-VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHHH
Confidence 456799999999999999999998 4789999999999999999998888889999999999999999995 99999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH-HHHHHhhcCCcc
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH-RQWVINLLDDDD 227 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~-r~~~l~~l~~~~ 227 (235)
+++++.+|+ .+..+++=.++.+.++|.+--..--+.-..-|+++..+-. ...+++.....+
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 999999999 9999999899999888864444333334467888765433 333334444433
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=63.42 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCCc----hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNES----PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~----aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
.|+.+|.+.|+.+..++. .+ .+|+.+...+|.|..+|..+.+++.++|.+..+++-=+.|+..|.+ +.+|+..|
T Consensus 99 ~A~~~Yt~Glk~kc~D~dlnavLY-~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~-~~~a~nw~ 176 (390)
T KOG0551|consen 99 DAVESYTEGLKKKCADPDLNAVLY-TNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER-FAEAVNWC 176 (390)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH-HHHHHHHH
Confidence 455555555555444443 22 2344555555555555555555555555555555555555555552 55555555
Q ss_pred HHHHHhCC
Q psy4772 166 GEKIKENS 173 (235)
Q Consensus 166 ~~al~~~P 173 (235)
+..++++-
T Consensus 177 ee~~~~d~ 184 (390)
T KOG0551|consen 177 EEGLQIDD 184 (390)
T ss_pred hhhhhhhH
Confidence 55544443
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.1e-05 Score=68.68 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=80.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|.+++|++.|..+|.++|..+..+..|+.|+..+++-. .|+..|..++.+||+....+ -.+|.....+|.+++|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~-----~airD~d~A~ein~Dsa~~y-kfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN-----AAIRDCDFAIEINPDSAKGY-KFRGYAERLLGNWEEA 201 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCc-----hhhhhhhhhhccCccccccc-chhhHHHHHhhchHHH
Confidence 57899999999999999999999999999999988753 79999999999999999998 4699999999999999
Q ss_pred HHHHHHHHHcCCCC
Q psy4772 127 LALTADAITMNPAN 140 (235)
Q Consensus 127 l~~~~~al~l~P~~ 140 (235)
-..+..+++++-+-
T Consensus 202 a~dl~~a~kld~dE 215 (377)
T KOG1308|consen 202 AHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHhccccH
Confidence 99999999987443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.01 Score=50.26 Aligned_cols=164 Identities=13% Similarity=0.180 Sum_probs=120.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch---hhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP---WNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a---w~~~~g~il~~ 119 (235)
.|+|++|...|+++.+..|-.+ .+...++.+.+..++|+ .|+...++-+++.|.++.+ . |.+|.+...
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~-----~A~~~~drFi~lyP~~~n~dY~~-YlkgLs~~~ 120 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYD-----LALAYIDRFIRLYPTHPNADYAY-YLKGLSYFF 120 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhc
Confidence 4899999999999999998875 67788888888888875 7999999999999999974 3 456666543
Q ss_pred c--------cccHHHHHHHHHHHHcCCCChHHHHHH-----------------HHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 120 G--------EKSERALALTADAITMNPANYTVWQYR-----------------REILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 120 ~--------~~~~eAl~~~~~al~l~P~~~~aw~~r-----------------~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
. ..-.+|+..++.++...|++..+---. |..|.+-| .+..|+.-++++++..|+
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~-~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG-AYVAAINRFEEVLENYPD 199 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHhcccc
Confidence 2 224889999999999999987643322 22333333 377888899999998876
Q ss_pred ChH---HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 175 NYQ---VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 175 n~~---aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
-.+ ++..+..++..+|..++|-.. .++|..++-+-. |+-..+
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s~-~~~~~~ 244 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDSQ-WYKDAY 244 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCCc-chhhhh
Confidence 654 667777788888887777655 566666544432 544444
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00043 Score=59.86 Aligned_cols=153 Identities=8% Similarity=0.024 Sum_probs=116.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+|.+|++++..-.+.+|++-.++..+|.|++...+|. .|-.+|.+.-++.|+-..-- +..+..+.+.+.+.+|
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~-----~AA~CYeQL~ql~P~~~qYr-lY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFA-----LAAECYEQLGQLHPELEQYR-LYQAQSLYKACIYADA 97 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhChHHHHHH-HHHHHHHHHhcccHHH
Confidence 46799999999999999999999999999999987664 68899999999999876532 2234555555666555
Q ss_pred HHHHHH------------------------------HHHcCC--CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 127 LALTAD------------------------------AITMNP--ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 127 l~~~~~------------------------------al~l~P--~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
|..... .++.-| .......+.|-++.+-| .+++|+.-|+.+++..--
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg-qyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG-QYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc-cHHHHHHHHHHHHhhcCC
Confidence 543322 222334 33444555565566666 499999999999999999
Q ss_pred ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 175 NYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 175 n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
++-.-++.+.+..+.+.+..|++.+...|+.-
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999998777666543
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00063 Score=57.26 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=86.5
Q ss_pred hhHhhhHHHHHhhcCCCCHH--HHHHHHHHHHHHHHh-CCCCCchh----------hHHHHHHHhcccccHHHHHHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPE--VIQREIDYCRDKIQI-APKNESPW----------NYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~--~~~~Al~~~~kal~l-~p~~~~aw----------~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
..++..+|.=++.+|+|.|+ .+.+|+......... .|-.+ -| ..+...|+...|.|-++++.+..+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 56788899999999998763 466677666554433 33333 22 123456777889999999999999
Q ss_pred HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 134 l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
|..+|.+..|++-|+.+.-..- +..+|...+.++|+++|.-.++=
T Consensus 257 L~~~~~nvKA~frRakAhaa~W-n~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVW-NEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999998887 47999999999999999865543
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=55.60 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=113.9
Q ss_pred HHHHhHHhcCCCchhHhhhHH-HHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHH
Q psy4772 54 SYIEGLISHDVRNNSAWTQRY-FVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132 (235)
Q Consensus 54 ~~~~~aL~~~P~~~~a~~~~g-~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~ 132 (235)
..++..+...-.+-..|..++ .+++.-|+++ +|+....+...+. ..+. .. .|+.++.+.+-|.+..++
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d-----eAl~~~~~~~~lE---~~Al--~V-qI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFD-----EALKALHLGENLE---AAAL--NV-QILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChH-----HHHHHHhccchHH---HHHH--HH-HHHHHHHHHHHHHHHHHH
Confidence 334445555555554565555 5555666664 5655544422221 2233 22 677788888888888888
Q ss_pred HHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 133 AITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
...++-+..- ..++..+.++ |....+|.-.|+...+..|..+...++.+.+...+|++++|...++.|+..++++
T Consensus 163 mq~ided~tL--tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDEDATL--TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchHHHH--HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 8888766543 3333333333 2247888888999999888889999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHhhcCCcccc
Q psy4772 210 YHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 210 ~~aw~~r~~~l~~l~~~~~~ 229 (235)
+.+..|...+-.++|++++.
T Consensus 241 petL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHHHHHHhCCChHH
Confidence 99999988888888988654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0064 Score=51.46 Aligned_cols=159 Identities=9% Similarity=-0.046 Sum_probs=120.2
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--HHHHHHHhcccccHHHHHHHHHHHHcCCCChH-
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN--YLRGAVVNAGEKSERALALTADAITMNPANYT- 142 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~--~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~- 142 (235)
-++-|++.|....+.|+++ +|+..|+++....|-.+.+=. ..++.++.+.+++++|+...++-+.+.|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~-----~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYE-----EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 4678999999999999875 799999999999998885321 23556677889999999999999999988876
Q ss_pred --HHHHHHHHHHHhh-------HhHHHHHHHHHHHHHhCCCChH---------------Hh--HHHHHHHHHcCCchHHH
Q psy4772 143 --VWQYRREILKALN-------KDLHQELKYIGEKIKENSKNYQ---------------VW--RHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 143 --aw~~r~~~l~~l~-------~~~eeal~~~~~al~~~P~n~~---------------aw--~~r~~~l~~l~~~~~Al 196 (235)
+.+-+|.++...- ..-.+|+..++.+|++.|++.= +- ...|..+.+.|.+..|+
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 5666777654431 1246789999999999998752 22 22456677788899999
Q ss_pred HHHHHHHHhCCCChHH---hHHHHHHHhhcCCcccc
Q psy4772 197 ALTAAILAQDAKNYHA---WQHRQWVINLLDDDDRG 229 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~a---w~~r~~~l~~l~~~~~~ 229 (235)
.-++.+++.-|+-.+. +..+..++..||.++.+
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 9999999988776554 44445555678877544
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0028 Score=53.91 Aligned_cols=123 Identities=10% Similarity=0.077 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHH--HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGA--VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~--il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
+++-|.+...+..+++.+..-.- ..-++ +-...++.++|.-.|+..-+..|..+...+..+-|...++ ++++|...
T Consensus 152 r~d~A~~~lk~mq~ided~tLtQ-LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~-~~eeAe~l 229 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDATLTQ-LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG-RYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHccchHHHHHH-HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc-CHHHHHHH
Confidence 44568888888888887765321 11112 2334567999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH-HHHHHHHhCCCChH
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA-LTAAILAQDAKNYH 211 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~-~~~~ai~ldp~n~~ 211 (235)
++.+|..+++++.+..++..+-..+|...+..+ .+...-..+|.++-
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999999999999999999887774 55566667887753
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00044 Score=59.70 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=90.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----hhhH-HHHHHHhcccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----PWNY-LRGAVVNAGEK 122 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----aw~~-~~g~il~~~~~ 122 (235)
++++|...|++| |.++...|++. +|.+.|.++....-+.-. +..+ ..+.++.+ .+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~-----~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~ 89 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWE-----KAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GD 89 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CH-----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccc-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hC
Confidence 566776655554 55666666664 566666666544332221 1111 23344444 48
Q ss_pred cHHHHHHHHHHHHcC--CCC----hHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCCh------HHhHHHHHHHHHc
Q psy4772 123 SERALALTADAITMN--PAN----YTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKNY------QVWRHRQIIVEWM 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~--P~~----~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~------~aw~~r~~~l~~l 189 (235)
+++|+.++++++.+. -+. ..++...|.++... + ++++|+++|++|++.....- ......+.++..+
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 899999999999862 222 34666778888887 7 59999999999998643222 3567788899999
Q ss_pred CCchHHHHHHHHHHHhC
Q psy4772 190 GEPDEELALTAAILAQD 206 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ld 206 (235)
|+|++|++.|++++..-
T Consensus 169 ~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T-HHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998854
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.1e-05 Score=66.99 Aligned_cols=182 Identities=10% Similarity=0.100 Sum_probs=125.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCch----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh----CCCC--CchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI----APKN--ESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l----~p~~--~~aw~~~~g~ 115 (235)
+|+....+.+|..||++-.++. .+|..+|.+++.+++|. +|+++-..=|.+ .-+- ..+-. ++|.
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~-----kAl~yH~hDltlar~lgdklGEAKssg-NLGN 103 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYE-----KALKYHTHDLTLARLLGDKLGEAKSSG-NLGN 103 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHH-----HHHhhhhhhHHHHHHhcchhccccccc-cccc
Confidence 4788999999999999988874 45678888888887764 677654332221 1111 12222 4789
Q ss_pred HHhcccccHHHHHHHHHHHHcC------CCChHHHHHHHHHHHHhhH-------------------hHHHHHHHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADAITMN------PANYTVWQYRREILKALNK-------------------DLHQELKYIGEKIK 170 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~------P~~~~aw~~r~~~l~~l~~-------------------~~eeal~~~~~al~ 170 (235)
++..+|.+++|+.|+.+-|.+. -.-.-|++++|.+|..-|+ .++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877542 2345688999999988764 35667777777665
Q ss_pred hCCCCh------HHhHHHHHHHHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 171 ENSKNY------QVWRHRQIIVEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 171 ~~P~n~------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+-.+.- .++-++|..++.+|+|..|+..-+.-+.+- ..--.|+.++|++.-++|.+.-|.-.|
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 443322 256667778888888988887655544432 223457788888888888886665443
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0009 Score=58.46 Aligned_cols=88 Identities=8% Similarity=0.177 Sum_probs=76.4
Q ss_pred hcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
.+|..|..+|.+.|+..-.+ +..|.||+.+...+|.|. .+|.+|.+++.++|.+..+. ++-+.|+..+++
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyR-----s~l~Dcs~al~~~P~h~Ka~-~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYR-----SALNDCSAALKLKPTHLKAY-IRGAKCLLELER 168 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHhcCcchhhhh-hhhhHHHHHHHH
Confidence 46899999999999986554 567899999999999885 69999999999999999999 688899999999
Q ss_pred cHHHHHHHHHHHHcCCCC
Q psy4772 123 SERALALTADAITMNPAN 140 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~ 140 (235)
+.+|+..++..+.++-+.
T Consensus 169 ~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 169 FAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHhhhhhhhHHH
Confidence 999999888886654433
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0036 Score=53.39 Aligned_cols=159 Identities=10% Similarity=0.084 Sum_probs=109.7
Q ss_pred hcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH----hCCCCCc--hhhHHHHHHHhc
Q psy4772 47 NLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ----IAPKNES--PWNYLRGAVVNA 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~----l~p~~~~--aw~~~~g~il~~ 119 (235)
+.|.-++..+.+.++.+ |..+.....+|.+-++.|+-. .|-.+|+.+-+ ++.-... .. .+.+.++..
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k-----~a~~yf~~vek~~~kL~~~q~~~~V~-~n~a~i~lg 264 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK-----TAEKYFQDVEKVTQKLDGLQGKIMVL-MNSAFLHLG 264 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHhhhhccchhHHHH-hhhhhheec
Confidence 56888999999999999 677888899999999998642 34444442222 2211111 11 123445555
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH---HhHHHHHHH-HHcCCchHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ---VWRHRQIIV-EWMGEPDEE 195 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~---aw~~r~~~l-~~l~~~~~A 195 (235)
.+.+-+|...++++++.||.++.+-++++.|+..+|+ ..+|++-++.++++.|..+. ..+++...+ ....+..+-
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~ 343 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQK 343 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhH
Confidence 6789999999999999999999999999999999995 99999999999999997643 334444443 222222233
Q ss_pred HHHHHHHHH-hCCCChHH
Q psy4772 196 LALTAAILA-QDAKNYHA 212 (235)
Q Consensus 196 l~~~~~ai~-ldp~n~~a 212 (235)
...+..++. ..|+++..
T Consensus 344 k~~l~~~ia~~~~d~f~~ 361 (366)
T KOG2796|consen 344 KQALLEAVAGKEGDSFNT 361 (366)
T ss_pred HHHHHHHHhccCCCcccc
Confidence 334444444 55665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=56.69 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc-ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNA-GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~-~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
++.|-..|.+|++..+-+++.| ...+.+-.. .++.+.|...|+.+++..|.+...|..-...+..++ +.+.+...|+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy-~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~-d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVY-VAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN-DINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHH-HHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-cHHHHHHHHH
Confidence 4577788888886666678887 455555344 445555888999999888888888888888888888 4788888899
Q ss_pred HHHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 167 EKIKENSKNY---QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 167 ~al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
+++..-|... ..|......-.+.|+.+......+++.+.-|.+.....
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9888877666 57777777778888888888888888888888655443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.017 Score=53.03 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=120.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhh--cCCCC---HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINH--TTQFT---PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~--~~~~~---e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~ 121 (235)
..++.|-..|.-||..-|++-.--..++.+.+. -|+-. +..+.+---.|.+.++.||-++.+| +-.-.+....|
T Consensus 258 kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW-fdylrL~e~~g 336 (677)
T KOG1915|consen 258 KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW-FDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH-HHHHHHHHhcC
Confidence 456778888888999999886555555555443 23211 1122222245888999999999999 44445666678
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh---------HhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHH--
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALN---------KDLHQELKYIGEKIKENSKNY----QVWRHRQIIV-- 186 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~---------~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l-- 186 (235)
.-+.-.+.|++||.--|....--+.+..||.=++ ++.+.+...|+.+|++=|.-- ..|..-+...
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 8888889999999888876665555555554432 235566667777777666332 2333222222
Q ss_pred -------------------------------HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 187 -------------------------------EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 187 -------------------------------~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
.+++.++.....|++-|+-.|.|-.+|...+-+-..||+.+.+
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 2233367777888999999999999999999888899988543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00018 Score=41.29 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
.+|+.+|.++..+|++++|+++++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35556666666666666666666666666553
|
... |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0027 Score=59.17 Aligned_cols=128 Identities=13% Similarity=-0.055 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhCCCCCchhhHH-HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 91 EIDYCRDKIQIAPKNESPWNYL-RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 91 Al~~~~kal~l~p~~~~aw~~~-~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
++..+..-+.++|.+++...-. +...+...+....+.-....++..||.+..+..+++..++..+..+.-+..+...+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555566778888764211 233445567888888889999999999999999999988888765666666777799
Q ss_pred HhCCCChHHhHHH------HHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 170 KENSKNYQVWRHR------QIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 170 ~~~P~n~~aw~~r------~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
...|+|.+...++ +..+..+++..++.....++.++.|++++......+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 9999999988888 777788888888889999999999988665444333
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.01 Score=54.39 Aligned_cols=149 Identities=12% Similarity=0.128 Sum_probs=110.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+++..|-..+++||..+-.+...|..-+-+-+..++ +.-|-+.+++|+.+=|+--..| |.--.+-..+|...-|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~-----vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ-----VNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh-----HhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHH
Confidence 456889999999999999999999888877766553 4578899999999999999999 6443333458999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.+.|++-+...|+. .||..--..-.+-+ ..+.|...|++.+-.+|+ .+.|..-+..-.+.|...-+...|.+|++
T Consensus 161 RqiferW~~w~P~e-qaW~sfI~fElRyk-eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 161 RQIFERWMEWEPDE-QAWLSFIKFELRYK-EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHcCCCcH-HHHHHHHHHHHHhh-HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999975 67765443333444 378888888888888875 56666666666666654444444444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=56.27 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
.......+.+..+.|...|.+|+...+..+++|..-+.+-..++++.+.|...|+++++..|.+...|..-...+..+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 34455555666899999999999777778999998888877766566669999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCCh
Q psy4772 192 PDEELALTAAILAQDAKNY 210 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~ 210 (235)
.+.+...|++++..-|...
T Consensus 86 ~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 86 INNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHHHHHHhcCchh
Confidence 9999999999999888777
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.022 Score=49.21 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH-----HHHHHHHhhHhHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY-----RREILKALNKDLHQELKY 164 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~-----r~~~l~~l~~~~eeal~~ 164 (235)
+|...+..++..+|++..+- ..++.++...|+.++|...+.. .|.....=-. +-..+.+... -.....
T Consensus 152 ~a~~~~~~al~~~~~~~~~~-~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~l~a~i~ll~qaa~--~~~~~~ 224 (304)
T COG3118 152 EAAPLLKQALQAAPENSEAK-LLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHGLQAQIELLEQAAA--TPEIQD 224 (304)
T ss_pred hHHHHHHHHHHhCcccchHH-HHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHHHHHHHHHHHHHhc--CCCHHH
Confidence 56666777777777776666 4566677777777666554433 2333222111 1122222221 122455
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+++.+..+|+++.+-+.++..+...|+.++|++.+=..+..|
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 666677777777777777777777777777776655555543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.032 Score=49.23 Aligned_cols=157 Identities=10% Similarity=0.080 Sum_probs=108.0
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCC-------CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQF-------TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~-------~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
..-+++.++.+|.+.++|..........-.. ..+..+.-+..+.+||+.+|.+...|. ..-.+..+....++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l-~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLL-GYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhCCHHH
Confidence 3567899999999999999888776654332 124567788999999999999998883 44355556667788
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHH-hhH-hHHHHHHHHHHHHH-------hC----C-------CChHHhHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKA-LNK-DLHQELKYIGEKIK-------EN----S-------KNYQVWRHRQII 185 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~-l~~-~~eeal~~~~~al~-------~~----P-------~n~~aw~~r~~~ 185 (235)
..+-+++++..+|.++..|...-..... ... .+++.+..|.++|+ .. + .-......+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8899999999999999999865433333 210 13344444444333 21 0 011233444555
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+...|-.+.|+..++-.++++---+
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHcCCc
Confidence 6778889999999999999875333
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=54.99 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
..+.+.++.+.+ +++.|+.+.++++..+|+++.-|-.||.++.++|.+..|+..++.-++.-|+++.+-.-+..+-
T Consensus 184 l~nLK~~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345566666777 5999999999999999999999999999999999999999999999999999999865554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00067 Score=38.80 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
+|+.+|.++..+| ++++|+.+++++++++|
T Consensus 3 ~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLG-DYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Confidence 4555555555555 35555555555555555
|
... |
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0069 Score=53.29 Aligned_cols=156 Identities=8% Similarity=-0.021 Sum_probs=106.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-CCCCCchhhHHHHH---HHhccccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-APKNESPWNYLRGA---VVNAGEKS 123 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-~p~~~~aw~~~~g~---il~~~~~~ 123 (235)
.+-+|-...+++|.-.|.+..+|..--.+.+..|+.. .-...+.|++-. ||..|-- .|..|. .+.+.|-|
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~-----~~k~ai~kIip~wn~dlp~~-sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQI-----GKKNAIEKIIPKWNADLPCY-SYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchh-----hhhhHHHHhccccCCCCcHH-HHHHHHHHhhHHHhccc
Confidence 3456666778888888888888877777777777653 234566777776 6665432 244443 45667889
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC----CChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS----KNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P----~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.+|-+.-++++++||.+..|-+.++-+++--++ +.++++|..+.-..=- .-.+-|-|-+..+..-+.|+.|++.|
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999999999999999999999888885 7888888766432111 11123344455555557899999998
Q ss_pred HHHHH--hCCCCh
Q psy4772 200 AAILA--QDAKNY 210 (235)
Q Consensus 200 ~~ai~--ldp~n~ 210 (235)
++-|- +...|+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 87654 344444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.033 Score=50.00 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=97.5
Q ss_pred hcHHHHHHHHHhHHhc----CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHH-HHHhCCCCCchhhHHHHHHHhcc-
Q psy4772 47 NLFSDELSYIEGLISH----DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRD-KIQIAPKNESPWNYLRGAVVNAG- 120 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~----~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~k-al~l~p~~~~aw~~~~g~il~~~- 120 (235)
.+|+.=+.+++..=.+ -++.+.+-++.|.++.+..+ ++..++|++.+.. +....+.++..+ ...|.|+..+
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~--~gdre~Al~il~~~l~~~~~~~~d~~-gL~GRIyKD~~ 231 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK--PGDREKALQILLPVLESDENPDPDTL-GLLGRIYKDLF 231 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc--CCCHHHHHHHHHHHHhccCCCChHHH-HHHHHHHHHHH
Confidence 3455555555555555 45566777778888877322 1233578888777 555666667777 4677776542
Q ss_pred --------cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH-------HHHHH----hCCCChHHhHH
Q psy4772 121 --------EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI-------GEKIK----ENSKNYQVWRH 181 (235)
Q Consensus 121 --------~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~-------~~al~----~~P~n~~aw~~ 181 (235)
...++|+..|.++.+++|+.+.. .|.+.++.-.|..++...+.- ..+.+ -.-.+++..-.
T Consensus 232 ~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~AT 310 (374)
T PF13281_consen 232 LESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVAT 310 (374)
T ss_pred HHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 23578888888888888655443 444555555553222211111 11111 12355555555
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+.-+..-.|+++++.+++++++.+.|. +|+-
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~~~---~W~l 341 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLKPP---AWEL 341 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCc---chhH
Confidence 666667788999999999999988654 5553
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.037 Score=49.62 Aligned_cols=158 Identities=5% Similarity=-0.043 Sum_probs=109.3
Q ss_pred HhHHhcCCCchhHhhhHHHHHhhcCCCCH--HHHHHHHHHHHHHHH--h-----CCCCC---------------chhhHH
Q psy4772 57 EGLISHDVRNNSAWTQRYFVINHTTQFTP--EVIQREIDYCRDKIQ--I-----APKNE---------------SPWNYL 112 (235)
Q Consensus 57 ~~aL~~~P~~~~a~~~~g~~l~~~~~~~e--~~~~~Al~~~~kal~--l-----~p~~~---------------~aw~~~ 112 (235)
-..|+.+|.+.+++...+.|...+|+.+. +-+++|+=.|+.++- . ++... .+. ++
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal-~r 108 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL-FR 108 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH-HH
Confidence 35678999999999999999999998764 357777777765442 1 22222 122 23
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCC-ChHHHH-HHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-----hHHhHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPA-NYTVWQ-YRREILKALNKDLHQELKYIGEKIKENSKN-----YQVWRHRQII 185 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~-~~~aw~-~r~~~l~~l~~~~eeal~~~~~al~~~P~n-----~~aw~~r~~~ 185 (235)
....+.++|-+..|++.++-++.+||. ++..-. ..-..-.+-+ .++-=+.+++.......++ +..-+.++.+
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~-~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSR-QYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 345566788999999999999999999 665433 3333333334 3666666776655532222 2455677888
Q ss_pred HHHcCCc---------------hHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 186 VEWMGEP---------------DEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 186 l~~l~~~---------------~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+..+++- ++|-..+.+|+...|.-.......
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~ 233 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDK 233 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888 899999999999998776654443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.03 Score=51.93 Aligned_cols=157 Identities=10% Similarity=0.012 Sum_probs=108.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhH-------hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSA-------WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a-------~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~ 119 (235)
|+-+.++..+.++.+ .++--.+ +++.+.....--+-.+...+.|.+......+.-|+..-.. +..|.+...
T Consensus 202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl-~~~gR~~~~ 279 (468)
T PF10300_consen 202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL-FFEGRLERL 279 (468)
T ss_pred CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHH
Confidence 456889999988877 4433222 2333322221100022345678889999999999866554 679999999
Q ss_pred ccccHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH-HHHHHHHcCCc--
Q psy4772 120 GEKSERALALTADAITMNPANY----TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH-RQIIVEWMGEP-- 192 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~-r~~~l~~l~~~-- 192 (235)
.|+.++|++.+++++....+-. -.++.+++++.-+. +|++|..++.++.+.+.-+...+.+ .|-++..+++.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence 9999999999999885333322 35667899998888 5999999999999977665444433 55666778887
Q ss_pred -----hHHHHHHHHHHHhC
Q psy4772 193 -----DEELALTAAILAQD 206 (235)
Q Consensus 193 -----~~Al~~~~~ai~ld 206 (235)
++|.+++.++-.+-
T Consensus 359 ~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 359 AKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 77777777775543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.016 Score=44.61 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
.+....+..+...| .+++++..+++++..+|-+-.+|..+..++...|+..+|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44555666777778 48999999999999999999999999999999999999998877763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.046 Score=55.75 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=82.7
Q ss_pred hhHhhhhhhhhcHHHHHHHHHhHHhc-CCCchhHhhhHHHHHhhcCC-CC-HHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q psy4772 37 VVAIAYSQKCNLFSDELSYIEGLISH-DVRNNSAWTQRYFVINHTTQ-FT-PEVIQREIDYCRDKIQIAPKNESPWNYLR 113 (235)
Q Consensus 37 ~~~~~y~~~~~~~~~Al~~~~~aL~~-~P~~~~a~~~~g~~l~~~~~-~~-e~~~~~Al~~~~kal~l~p~~~~aw~~~~ 113 (235)
+-.++|-...+..++|-+..++||.. |+.-.+=..|.-.++.++.. |- ++ .-...|.+|.+.. +-+..+. .+
T Consensus 1462 I~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ee---sl~kVFeRAcqyc-d~~~V~~-~L 1536 (1710)
T KOG1070|consen 1462 IRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEE---SLKKVFERACQYC-DAYTVHL-KL 1536 (1710)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHH---HHHHHHHHHHHhc-chHHHHH-HH
Confidence 44888888888889999999999875 45444333333333333221 11 10 0011112221111 1112221 23
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCC
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~ 191 (235)
.-+|...+++++|.+.++..++..-.-...|...+..+.+..+ -+.|...+.+|++.-|+ +......-+.+-++.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3445555555555555555555544455555555555544442 34445555555555555 33333333444445555
Q ss_pred chHHHHHHHHHHHhCCCChHHhH
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
.++....|+..+..+|+--..|.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWS 1638 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHH
Confidence 55555555555555555555543
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=51.24 Aligned_cols=133 Identities=9% Similarity=-0.019 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH-
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY- 164 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~- 164 (235)
.+++.||++..--.+.+|++-.+. ..+|.|+....++.+|-.||++.-.+.|+..+--.+-+..+.+-+. +.+|+..
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgL-SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGL-SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 456789999999999999999999 5899999999999999999999999999998887777777776653 3443332
Q ss_pred -----------------------------HHHHHHhCC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 165 -----------------------------IGEKIKENS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 165 -----------------------------~~~al~~~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
++.+++.-| +.....++.|-++.+-|.+++|++-|+.|++.---++..-
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH
Confidence 233444445 4556778888888999999999999999999876666665
Q ss_pred HHHHHHH
Q psy4772 214 QHRQWVI 220 (235)
Q Consensus 214 ~~r~~~l 220 (235)
++.+.+.
T Consensus 182 YniALaH 188 (459)
T KOG4340|consen 182 YNLALAH 188 (459)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0016 Score=60.09 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
....|+..|.++++.-|.....+.+|+.++++.+=. ++.--|+.+|.+++++||....+| ++++.++..++++.+|+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~--~d~~~AlrDch~Alrln~s~~kah-~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR--GDSYLALRDCHVALRLNPSIQKAH-FRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc--ccHHHHHHhHHhhccCChHHHHHH-HHHHHHHHHHhhHHHhh
Confidence 357788888888888888888888888877776522 233357778888888888888888 67778888888888888
Q ss_pred HHHHHHHHcCCCChH
Q psy4772 128 ALTADAITMNPANYT 142 (235)
Q Consensus 128 ~~~~~al~l~P~~~~ 142 (235)
++-..+....|.+..
T Consensus 466 ~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 466 SCHWALQMSFPTDVA 480 (758)
T ss_pred hhHHHHhhcCchhhh
Confidence 877777777775544
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.045 Score=50.43 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=68.2
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSERALA 128 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~eAl~ 128 (235)
..-...|+.|+...|.++..|..-..--...+-+. +--..|.++|.++|+++..|.+ -+.=....+ ..+.|..
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~-----~v~ki~~~~l~~Hp~~~dLWI~-aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG-----EVKKIFAAMLAKHPNNPDLWIY-AAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHhCCCCchhHHh-hhhhHHhhccchHHHHH
Confidence 56778999999999999999976543222222222 3347899999999999999954 222233333 3899999
Q ss_pred HHHHHHHcCCCChHHHHH
Q psy4772 129 LTADAITMNPANYTVWQY 146 (235)
Q Consensus 129 ~~~~al~l~P~~~~aw~~ 146 (235)
.+.+.|+.+|+++..|..
T Consensus 162 lflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 162 LFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHhhcCCCChHHHHH
Confidence 999999999999999975
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0037 Score=35.14 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
|++..|.++..+|+ +++|+..++++++.+|++
T Consensus 2 a~~~~a~~~~~~g~-~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGD-YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHHCcCC
Confidence 55666666666663 666666666666666653
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0023 Score=55.64 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI 150 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~ 150 (235)
++|...|..|+.+.|.++.+. ...|.+....+..-+|-.||-+||.+.|.+..|+.+|...
T Consensus 133 ekA~~lfeHAlalaP~~p~~L-~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQIL-IEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHH-HHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 477788888888888888887 4677777777777788888888888888888888877654
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.038 Score=48.75 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHhccc------------ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHH
Q psy4772 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGE------------KSERALALTADAITMNPANYTVWQYRREILKALNKDLH 159 (235)
Q Consensus 92 l~~~~kal~l~p~~~~aw~~~~g~il~~~~------------~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~e 159 (235)
...+++.++-+|.+..+| ..........- ..+.-+..+++||+.+|++...+..+-.+..++. .-+
T Consensus 5 ~~el~~~v~~~P~di~~W-l~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~ 82 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAW-LELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSE 82 (321)
T ss_pred HHHHHHHHHhCcccHHHH-HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHH
Confidence 356899999999999999 45533322221 1467789999999999999999988777777776 467
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCC--chHHHHHHHHHHH
Q psy4772 160 QELKYIGEKIKENSKNYQVWRHRQIIVEW-MGE--PDEELALTAAILA 204 (235)
Q Consensus 160 eal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~--~~~Al~~~~~ai~ 204 (235)
+-..-+++++..+|.++..|...-..... ... +.+-+..|.++|.
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 77888999999999999999976655544 333 4566666666655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.022 Score=52.44 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHH-----HHhcccccHHHHHHHHHHHHcCC---C---ChHHH------------H
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGA-----VVNAGEKSERALALTADAITMNP---A---NYTVW------------Q 145 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~-----il~~~~~~~eAl~~~~~al~l~P---~---~~~aw------------~ 145 (235)
++.++.-.+||+++|+++.||. .++. +......+++|++.-+..+..+. . ....+ .
T Consensus 185 ~aRIkaA~eALei~pdCAdAYI-LLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~Kr 263 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYI-LLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKR 263 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHh-hcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHH
Confidence 4667888999999999999994 4433 11222234555555555554432 1 11122 2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC-CCChHHhHHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGEPDEELALTAAILAQD-AKNYHAWQHRQWVI 220 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld-p~n~~aw~~r~~~l 220 (235)
..+.|..++|+ ..||++.+...++.+|. +.....++.-++..++.|.++-..+.+-=++. |+ -.+|+|=+-++
T Consensus 264 RLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk-SAti~YTaALL 339 (539)
T PF04184_consen 264 RLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK-SATICYTAALL 339 (539)
T ss_pred HHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc-hHHHHHHHHHH
Confidence 35788888995 89999999999998885 56688999999999999998888877753332 33 34566655555
|
The molecular function of this protein is uncertain. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0083 Score=55.53 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHH
Q psy4772 85 PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQE 161 (235)
Q Consensus 85 e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eea 161 (235)
+..+-.|+..|.++++.-|.....+. +++.++.++ |..--||..+-.++++||....||+.++.++..|++ +.+|
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~-nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~ea 464 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLE-NRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEA 464 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHH-hHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHh
Confidence 44566799999999999999998884 676776663 677889999999999999999999999999999995 9999
Q ss_pred HHHHHHHHHhCCCCh
Q psy4772 162 LKYIGEKIKENSKNY 176 (235)
Q Consensus 162 l~~~~~al~~~P~n~ 176 (235)
+.|-..+...+|.+.
T Consensus 465 l~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDV 479 (758)
T ss_pred hhhHHHHhhcCchhh
Confidence 999999999999664
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0095 Score=51.24 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.++.+.++++.|+.+.+.++.++|+++.-|.-||.++.+|| -+..|+..++..++.-|+.+.+-.-+..+.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD-CEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 45566789999999999999999999999999999999999 599999999999999999998877665543
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.023 Score=50.11 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=69.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc-CCCCh---HHHHHHH
Q psy4772 73 RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM-NPANY---TVWQYRR 148 (235)
Q Consensus 73 ~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-~P~~~---~aw~~r~ 148 (235)
.+.++...|++- +|-...+|+|.-.|.+--+|.+ .-.++..+|+.......+++++-. ||+-+ .+.-..+
T Consensus 109 ~aai~~~~g~~h-----~a~~~wdklL~d~PtDlla~kf-sh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 109 KAAILWGRGKHH-----EAAIEWDKLLDDYPTDLLAVKF-SHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred hHHHhhcccccc-----HHHHHHHHHHHhCchhhhhhhh-hhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 334444445443 2334456666666666666643 345666666666666666666655 55542 2233344
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
..+..+| .+.+|-+.-++++++||.+..+-+.++-++.-.+++.++.++-.
T Consensus 183 FgL~E~g-~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 183 FGLEECG-IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHhc-cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5555666 36666666666666666666666666666666666666665543
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=51.72 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=112.8
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-----chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-----SPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-----~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+++.+++.......+| .+++.+....+.+-...+ .+. ..+|.++..++.++++|+.|++|+++...+.
T Consensus 83 ~ea~lnlar~~e~l~~f-----~kt~~y~k~~l~lpgt~~~~~~gq~~-l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEF-----HKTISYCKTCLGLPGTRAGQLGGQVS-LSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHhcCCCCCcccccchhh-hhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 35666666666665554 478888888887766555 233 2356777778889999999999998755544
Q ss_pred H------HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC----CCh------HHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 142 T------VWQYRREILKALNKDLHQELKYIGEKIKENS----KNY------QVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 142 ~------aw~~r~~~l~~l~~~~eeal~~~~~al~~~P----~n~------~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+ ++..+|-.+-.+. ++++|+-+..+|.++-. ++. .+.+|++..+..+|+...|.++++.|.++
T Consensus 157 D~~LElqvcv~Lgslf~~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CceeeeehhhhHHHHHHHHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3 5566788888887 68999999999887543 222 36778888899999999999999998654
Q ss_pred --CCCChH----HhHHHHHHHhhcCCccccccccc
Q psy4772 206 --DAKNYH----AWQHRQWVINLLDDDDRGVLEYE 234 (235)
Q Consensus 206 --dp~n~~----aw~~r~~~l~~l~~~~~~~~~~~ 234 (235)
...|.. ...-.+-++-..|+...++.-|+
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 333332 22334444566777777776664
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.13 Score=48.83 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=130.2
Q ss_pred cccchhhhhccCCCCCCCCCCchhHhhhhh---hhhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHH
Q psy4772 15 YYKNREEWKDLRPIPQDDGPTPVVAIAYSQ---KCNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEV 87 (235)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~ 87 (235)
+=-+.+++..|.|-.+ +|....+-..|+. ..|+.++|-..|+++.+++=+. +.+|..-|-.-....+
T Consensus 367 i~tyteAv~~vdP~ka-~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~----- 440 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKA-VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN----- 440 (835)
T ss_pred HHHHHHHHHccCcccC-CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh-----
Confidence 3334567888998887 5566555555664 4578899999999999997665 4666666644443333
Q ss_pred HHHHHHHHHHHHHhCCCC-------------------CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKN-------------------ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~-------------------~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
++.|+.....|.-. |.. ...|. .........|-++.-...|+++|.+.---++.--+-+
T Consensus 441 ~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs-~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 441 FEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWS-MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred HHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34666666665542 222 12442 3344455567777777888888888888888888888
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhC--CCChHHhHHHH-HHHHHcC--CchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 149 EILKALNKDLHQELKYIGEKIKEN--SKNYQVWRHRQ-IIVEWMG--EPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~--P~n~~aw~~r~-~~l~~l~--~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
..++.-. .|+++.+.|++-|.++ |.-+..|+--- ....+.| +.+.|.++|++|++.=|-...=..|+.+
T Consensus 519 mfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 519 MFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8888877 4888888888877765 56777887533 3334444 3688888888888877644443344433
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=53.48 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
.+=+..|..|+..-+.+...| ..-..-..+.+.+.+--..|.++|.++|+++..|..-+.=....+...+.|...+.+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW-~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLW-LSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445688999999999999999 4442223334558999999999999999999999998887777775689999999999
Q ss_pred HHhCCCChHHhHH
Q psy4772 169 IKENSKNYQVWRH 181 (235)
Q Consensus 169 l~~~P~n~~aw~~ 181 (235)
|+.+|+++..|..
T Consensus 167 LR~npdsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNPDSPKLWKE 179 (568)
T ss_pred hhcCCCChHHHHH
Confidence 9999999998864
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.17 Score=44.21 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=85.9
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHHc-CC
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAITM-NP 138 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-~P 138 (235)
.......|...+.+....|++. -|...+.++...++.. ...+.+..+.++...|+..+|+...+..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~-----~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQ-----LALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcH-----HHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 5566677777777777777774 5677777777765322 2233245567788888888888888777771 11
Q ss_pred CC---------------------------------hHHHHHHHHHHHHh------hHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 139 AN---------------------------------YTVWQYRREILKAL------NKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 139 ~~---------------------------------~~aw~~r~~~l~~l------~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
+. ..++..+|.-...+ + ..++++..|.++++.+|....+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSE-SSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHhChhHHHHH
Confidence 11 11233333333333 2 24566777777777777777777
Q ss_pred HHHHHHHHHcCC-----------------chHHHHHHHHHHHhCCC
Q psy4772 180 RHRQIIVEWMGE-----------------PDEELALTAAILAQDAK 208 (235)
Q Consensus 180 ~~r~~~l~~l~~-----------------~~~Al~~~~~ai~ldp~ 208 (235)
++.|.....+-. ...|+..|-+++...++
T Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 296 HSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 777766644321 12466666667766666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.033 Score=41.27 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=41.9
Q ss_pred cccccHHHHHHHHHHHHcCCCChHHH---HHHHHHHHHhhH----------hHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 119 AGEKSERALALTADAITMNPANYTVW---QYRREILKALNK----------DLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~~~~aw---~~r~~~l~~l~~----------~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..|++-+||+..+.++...+++..+| ...|.++..+.. .+-.+++++.++..+.|..+...+.+|.-
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 34444445555555554444444322 122444444431 13345556666666666665555555554
Q ss_pred HHHcCCchHHHHHHHHHHH
Q psy4772 186 VEWMGEPDEELALTAAILA 204 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ 204 (235)
+....-|.+++.-.++++.
T Consensus 88 l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 88 LGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 4444445555555555554
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0055 Score=53.31 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
..+.|+.++|...|+.|+.+.|.+++++...|...+.-+ +.-+|-.||-+|+.++|.|..|..+|....
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHN-EIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-hhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 345688999999999999999999999999998888776 588999999999999999999999987543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0047 Score=33.21 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
+|+.+|.++..+++ +++|+.+++++++++|.
T Consensus 3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGD-YDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHccCCC
Confidence 45555555555552 55555555555555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0096 Score=38.23 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
.++++..+.++| ++++|+.+++++|+.+|.|.++-.-+.
T Consensus 4 lY~lAig~ykl~-~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 4 LYYLAIGHYKLG-EYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 344555555555 255555555555555555555544433
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.11 Score=53.24 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=127.7
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhcc----cccH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNAG----EKSE 124 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~~----~~~~ 124 (235)
.+..+.|++.+.-+|..+-.|..--.-....++ +++|-....+||. +|++-..-- .+.-.++.++ |.-+
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsE-----iekAR~iaerAL~tIN~REeeEK-LNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSE-----IEKARKIAERALKTINFREEEEK-LNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhh-----hHHHHHHHHHHhhhCCcchhHHH-HHHHHHHHhHHHhhCcHH
Confidence 346778999999999999999776655555554 4577788888775 556554322 1121233332 3334
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.-.+.|++|...+ +-+.++..+..+|..-++ +.+|.+.++.-++..-.....|...+..+.+...-+.|...+.+|+.
T Consensus 1515 sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1515 SLKKVFERACQYC-DAYTVHLKLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4556788887765 456788899999999995 89999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHH--hhcCCcccc
Q psy4772 205 QDAKNYHAWQHRQWVI--NLLDDDDRG 229 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l--~~l~~~~~~ 229 (235)
.-|+..|.=.-..++. -..|+-.+|
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 9999666655555554 345555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0052 Score=35.91 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
+|.++|.++..+|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666633
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.25 Score=47.08 Aligned_cols=155 Identities=13% Similarity=0.208 Sum_probs=108.2
Q ss_pred HhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHH-HHhCCCCC-----chhhHHHHHHHhcccccHHHHHHH
Q psy4772 57 EGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDK-IQIAPKNE-----SPWNYLRGAVVNAGEKSERALALT 130 (235)
Q Consensus 57 ~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~ka-l~l~p~~~-----~aw~~~~g~il~~~~~~~eAl~~~ 130 (235)
+-+|+.||.+.+-|..|-.++.. +.. +-+..|..| ...+|+-+ ..| ...|..+...|..+.|...|
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~--~~~-----~~i~tyteAv~~vdP~ka~Gs~~~Lw-~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEG--NAA-----EQINTYTEAVKTVDPKKAVGSPGTLW-VEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcC--ChH-----HHHHHHHHHHHccCcccCCCChhhHH-HHHHHHHHhcCcHHHHHHHH
Confidence 45778899999999988776653 222 344555544 45677654 456 46788888889999999999
Q ss_pred HHHHHcCCCCh----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC------------------CChHHhHHHHHHHHH
Q psy4772 131 ADAITMNPANY----TVWQYRREILKALNKDLHQELKYIGEKIKENS------------------KNYQVWRHRQIIVEW 188 (235)
Q Consensus 131 ~~al~l~P~~~----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P------------------~n~~aw~~r~~~l~~ 188 (235)
++++..+-+-. .+|..-+..-.+-. .++.|+.+.++|...=. ++...|...+.+...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~-~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHE-NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 99998875544 45666554444444 48888888888765211 233477777788888
Q ss_pred cCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 189 MGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 189 l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+|-++.-...|+++|.+.---+..-.|.+++|
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfL 521 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFL 521 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888888888888777777766666665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.23 Score=44.71 Aligned_cols=155 Identities=13% Similarity=0.084 Sum_probs=103.8
Q ss_pred hhhccCCCCCCCC-CCchh--Hhhhhh-h---hhcHHHHHHHHHh-HHhcCCCchhHhhhHHHHHhhc----CCCCHHHH
Q psy4772 21 EWKDLRPIPQDDG-PTPVV--AIAYSQ-K---CNLFSDELSYIEG-LISHDVRNNSAWTQRYFVINHT----TQFTPEVI 88 (235)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~--~~~y~~-~---~~~~~~Al~~~~~-aL~~~P~~~~a~~~~g~~l~~~----~~~~e~~~ 88 (235)
..++++++|-.+- ..+.. .-+++. + -|+.++|+..+.. ..+..+.+++.+-..|.++..+ +.-+.+..
T Consensus 163 Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~l 242 (374)
T PF13281_consen 163 LVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESL 242 (374)
T ss_pred HHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHH
Confidence 4566666654422 22322 334442 2 4789999999999 7777888999999999998754 22234568
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc-c---HHHHHHH----HHHHH----cCCCChHHHHHHHHHHHHhhH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-S---ERALALT----ADAIT----MNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-~---~eAl~~~----~~al~----l~P~~~~aw~~r~~~l~~l~~ 156 (235)
++|+..|.+++.++|+.+..-| .+.++...|. . .+..+.. ..+.+ -.-.+++..-.+..+..-++
T Consensus 243 dkAi~~Y~kgFe~~~~~Y~GIN--~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~- 319 (374)
T PF13281_consen 243 DKAIEWYRKGFEIEPDYYSGIN--AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG- 319 (374)
T ss_pred HHHHHHHHHHHcCCccccchHH--HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC-
Confidence 8999999999999999999875 4456655553 2 2222211 11111 13455666666666666677
Q ss_pred hHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 157 DLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 157 ~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
+++++...++++++..|. +|+.
T Consensus 320 d~~ka~~a~e~~~~l~~~---~W~l 341 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKLKPP---AWEL 341 (374)
T ss_pred CHHHHHHHHHHHhhcCCc---chhH
Confidence 699999999999998654 6763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0064 Score=34.09 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
.+++++|.++...|++++|+..+++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 378999999999999999999999999999974
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.026 Score=36.18 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=16.6
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
++..+.++|+|.+|+.+.+.+|+++|+|.+|..-+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 344444555555555555555555555555444333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.038 Score=42.42 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
.++..+...|++++|+..+.+++.++|-+-.+|..+-.++...|+ ..+|+..|++..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 456777889999999999999999999999999999999999995 8999998887643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.034 Score=51.63 Aligned_cols=117 Identities=8% Similarity=-0.020 Sum_probs=90.4
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~ 124 (235)
..+.|.+.+...++.-|+.+-..+..|.+....|+.+ +|++.+++++.....- .....+-+|+++..+.+++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~-----~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLE-----EAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHH-----HHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 4578999999999999999999999999999999864 7999999888433222 2222346788888899999
Q ss_pred HHHHHHHHHHHcCCCChHHHHH-HHHHHHHhhHhH-------HHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQY-RREILKALNKDL-------HQELKYIGEKIK 170 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~-r~~~l~~l~~~~-------eeal~~~~~al~ 170 (235)
+|..++.+.++.+.-+...+.+ .|-|+..+++ . ++|...+.++-.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHH
Confidence 9999999999988776655555 4667777774 5 666666666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.087 Score=37.58 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+...++.+.-+|++..+.+.++..+..-|+ +++|++.+-.+++.+|..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~-~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGD-YEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc
Confidence 344555555566666666666555555553 566666655555555543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.43 Score=40.88 Aligned_cols=127 Identities=10% Similarity=0.103 Sum_probs=61.2
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-chhhHHHHHHHhccc------
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-SPWNYLRGAVVNAGE------ 121 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-~aw~~~~g~il~~~~------ 121 (235)
...|+..|. ...+..++.+.+++|.++....- .+.+..+|...|.++....-... .+- +++|.++....
T Consensus 93 ~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~g-v~~d~~~A~~~~~~Aa~~g~~~a~~~~-~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 93 KTKAADWYR--CAAADGLAEALFNLGLMYANGRG-VPLDLVKALKYYEKAAKLGNVEAALAM-YRLGLAYLSGLQALAVA 168 (292)
T ss_pred HHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCC-cccCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHHHcChhhhccc
Confidence 455555555 44445555555566655554211 11233455566665555533221 112 23444444321
Q ss_pred -ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 122 -KSERALALTADAITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 122 -~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
....|+..+.++.... +..+....|.+|..- .+++.+|..+|.++.+... ..+++..+
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 1224555555555554 555555555555442 1235556666666555554 55555555
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.013 Score=31.38 Aligned_cols=30 Identities=20% Similarity=0.116 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
+|+.+|.++...+++++|..++++++.++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344444444444444444444444444444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.019 Score=42.55 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=60.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh---HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS---AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~---a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
.|+.-+||+..+..+..++++.. .+...|.++..+..-.+ ||+--.. |.
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~te----------------n~d~k~~--yL---------- 60 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTE----------------NPDVKFR--YL---------- 60 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhcc----------------CchHHHH--HH----------
Confidence 37788999999999999998884 44556666655432110 1111111 11
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.-+++++.++..+.|.++..++..|.=+.... .|++++.-++++|.+
T Consensus 61 -l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~-~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 -LGSVECFSRAVELSPDSAHSLFELASQLGSVK-YYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHhHHHHHHHhccChhHHHHHHHHHHHhhhHH-HHHHHHHHHHHHhcc
Confidence 24667777777777777777777776665555 477777777776653
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.048 Score=51.30 Aligned_cols=140 Identities=12% Similarity=-0.015 Sum_probs=106.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh-cccccHHHHHHHHHHHHcCCCChH-HHHHHHHHH
Q psy4772 74 YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN-AGEKSERALALTADAITMNPANYT-VWQYRREIL 151 (235)
Q Consensus 74 g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~-~~~~~~eAl~~~~~al~l~P~~~~-aw~~r~~~l 151 (235)
-..+.+..++. .-++.+..+...+...|.-+.-...+.+.++. ..|..-.|++|...|+...|.... ...+++.++
T Consensus 575 k~~~~r~~~~~--i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~ 652 (886)
T KOG4507|consen 575 KILLSRINNYT--IPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLL 652 (886)
T ss_pred HHHHHHHhccc--CcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHH
Confidence 34444444442 11356666666666666555422122334444 468999999999999999997654 467889999
Q ss_pred HHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 152 ~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
.+-+ ...+|-.++.+++.++..-+-..+..|..+..+.+.+.|++.++.|+.++|++..+-.-+
T Consensus 653 ~~~~-~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 653 IHYG-LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHhh-hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 8888 589999999999999999999999999999999999999999999999999998876543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.027 Score=40.22 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--hHHhHHHHHHHhhcCCccc
Q psy4772 160 QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--YHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 160 eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~~aw~~r~~~l~~l~~~~~ 228 (235)
..+..+++.++.+|++..+.+.++..+...|++++|++.+-.++..++.+ ..+---+--++..+|..+.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 35778899999999999999999999999999999999999999998877 4444444455577777643
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.11 Score=46.41 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=99.3
Q ss_pred cHHHHHHHHHhHHhcCCCch-----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh-----HHHHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNN-----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN-----YLRGAVV 117 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~-----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~-----~~~g~il 117 (235)
+|.+++.+..-.+.+-.-.+ .++...|.+...++ .++++++.|++|++...++..+.. ..+|.++
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls-----~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS-----VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH-----HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 34455554444444322222 34444555555554 456899999999998777765430 2467777
Q ss_pred hcccccHHHHHHHHHHHHcCCCCh----------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC------CChHHhHH
Q psy4772 118 NAGEKSERALALTADAITMNPANY----------TVWQYRREILKALNKDLHQELKYIGEKIKENS------KNYQVWRH 181 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l~P~~~----------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P------~n~~aw~~ 181 (235)
..+.++++|+-+-.+|.++--... .+.++.+-.+..+|+ +.+|.++++++.++.- -..-...-
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 788889999998888887643332 244556666666784 8999999999877532 22334555
Q ss_pred HHHHHHHcCCchHHHHHHHHHHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.+.++...|+.+.|..-|+.|..
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHH
Confidence 77888889998888888887754
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.066 Score=41.18 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=52.6
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
+.-++.+|++....+. .++++.|..+..+++ -.|..-.-+.|.++.-+.++++|+.++.+.+..|+..|++.+|.--
T Consensus 33 ~s~f~lAwaLV~S~~~--~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDT--EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccch--HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456666777665433 345667777777775 4444444333455556666677777777777777777777777666
Q ss_pred HHHHHHHhh
Q psy4772 147 RREILKALN 155 (235)
Q Consensus 147 r~~~l~~l~ 155 (235)
+..+..++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 665555553
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.17 Score=47.53 Aligned_cols=133 Identities=14% Similarity=-0.037 Sum_probs=97.2
Q ss_pred HHHHHHhHHhcCCCchhHhhhH--HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 52 ELSYIEGLISHDVRNNSAWTQR--YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 52 Al~~~~~aL~~~P~~~~a~~~~--g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
++..+..-+..+|.+++.+... ...+...+... .+......++..||.+..+.+ ++|..+...|....++..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~-~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADST-----LAFLAKRIPLSVNPENCPAVQ-NLAAALELDGLQFLALAD 123 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccch-----hHHHHHhhhHhcCcccchHHH-HHHHHHHHhhhHHHHHHH
Confidence 5555555566778888775444 55555565543 467778899999999999995 688887777765555555
Q ss_pred HH-HHHHcCCCChHHHHHH------HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 130 TA-DAITMNPANYTVWQYR------REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 130 ~~-~al~l~P~~~~aw~~r------~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
+. .+....|++.....++ +..+..+++ .+++.....++..+.|++++..-+..+.....-+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 44 5889999999999999 666666664 7888888999999999998777766666544443
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.1 Score=51.06 Aligned_cols=161 Identities=14% Similarity=0.191 Sum_probs=93.2
Q ss_pred cCCCCCCCCCCchhHhhhhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC
Q psy4772 25 LRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK 104 (235)
Q Consensus 25 ~~~~~~~~~~~~~~~~~y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~ 104 (235)
|...+|++++....-...+..+|..++|+..|++.=+.+ .+-.++...|+. ++|++.-..-=++.=+
T Consensus 792 lR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w-----~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 792 LRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMW-----SEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccH-----HHHHHHHhhccceehh
Confidence 344455554333333345556788888888887764421 111223333332 2333322211111111
Q ss_pred CCchhhHHHHHHHhcccccHHHHHHHHHH----------HHcCC----------CChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 105 NESPWNYLRGAVVNAGEKSERALALTADA----------ITMNP----------ANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 105 ~~~aw~~~~g~il~~~~~~~eAl~~~~~a----------l~l~P----------~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
+ .+ |+.+.-+...++.+.||+.|+|+ |.-+| ++...|..-|..++..|. .+.|+.+
T Consensus 859 ~--Ty-y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Ge-mdaAl~~ 934 (1416)
T KOG3617|consen 859 N--TY-YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGE-MDAALSF 934 (1416)
T ss_pred h--hH-HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccc-hHHHHHH
Confidence 1 11 33334444455566666666543 22233 344566677888888884 7888888
Q ss_pred HHHH---------------------HHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 165 IGEK---------------------IKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 165 ~~~a---------------------l~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
|..| |.....|-.|-||++.-|...|++.+|+.+|.+|
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7654 4456788889999999999999999999988876
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=1 Score=39.19 Aligned_cols=150 Identities=9% Similarity=0.060 Sum_probs=106.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHH-----HHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRG-----AVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g-----~il~~~~ 121 (235)
+++.+|...|..++...|++.++-..++.++...|+.+ -+..+|.-.|.....=. ..| .++....
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e---------~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~qaa 217 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVE---------AAQAILAALPLQAQDKA-AHGLQAQIELLEQAA 217 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChH---------HHHHHHHhCcccchhhH-HHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999864 24556666676665321 122 1122222
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
... ........+..||++..+-+..+..+...|+ .++|++.+=..+++|-..- -.++.+-+-.
T Consensus 218 ~~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~~---------------d~~~Rk~lle 280 (304)
T COG3118 218 ATP-EIQDLQRRLAADPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGFE---------------DGEARKTLLE 280 (304)
T ss_pred cCC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccc---------------CcHHHHHHHH
Confidence 211 2345678888999999999999999999995 8999998888887764321 1233333333
Q ss_pred HH-HhCCCChHHhHHHHHHHhhc
Q psy4772 202 IL-AQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 202 ai-~ldp~n~~aw~~r~~~l~~l 223 (235)
.+ ..+|.|+-+-.+|+.+.++|
T Consensus 281 ~f~~~g~~Dp~~~~~RRkL~slL 303 (304)
T COG3118 281 LFEAFGPADPLVLAYRRKLYSLL 303 (304)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhh
Confidence 33 36788888888888887654
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.058 Score=49.75 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=84.2
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHH-HHcCCC--------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADA-ITMNPA--------NYTVWQYRREILKALNKDLHQELKYIGEKIK- 170 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a-l~l~P~--------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~- 170 (235)
...+.+.+. +.+......+|.+..|.+..... +...|. .-..|+++|-|+.+++. +.-+..+|.+|++
T Consensus 235 ~a~~s~~~l-~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~-y~~~~~~F~kAL~N 312 (696)
T KOG2471|consen 235 IAQDSSMAL-LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC-YQASSVLFLKALRN 312 (696)
T ss_pred hcCCCcHHH-HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh-HHHHHHHHHHHHHH
Confidence 334444444 45666666677777777655432 222333 22356777777777774 6666666666664
Q ss_pred -----------------hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 171 -----------------ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 171 -----------------~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.-.+.....|+.|..+...|++-.|.+||.++...--+|+..|.-++-++
T Consensus 313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11367789999999999999999999999999999999999999998887
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.84 Score=37.36 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=100.2
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhcccccHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~~~~~~eAl~ 128 (235)
+.++.-..+.+...|.. .-.+.+|..+..+|++. +|...|.+++. +-..++... ..++..+...++.-.|+.
T Consensus 73 ~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~-----EA~~hy~qalsG~fA~d~a~l-LglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 73 ERHLREATEELAIAPTV-QNRYRLANALAELGRYH-----EAVPHYQQALSGIFAHDAAML-LGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred hHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhh-----hhHHHHHHHhccccCCCHHHH-HHHHHHHHhhccHHHHHH
Confidence 33333334444444443 34567788888888875 57788887775 334444444 466677778888888888
Q ss_pred HHHHHHHcCCCChHH--HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH----HHHHHH
Q psy4772 129 LTADAITMNPANYTV--WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL----ALTAAI 202 (235)
Q Consensus 129 ~~~~al~l~P~~~~a--w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al----~~~~~a 202 (235)
..+++.+-+|..-+. ..-.+.++-.+|+ +++|-..++.++.-.|.- ++-...+-.+.++|+..++. +.++.+
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 888888888765443 3344667778885 788888888888888864 34444455566777665554 344444
Q ss_pred HHhCCCChHHhHHHHHH
Q psy4772 203 LAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 203 i~ldp~n~~aw~~r~~~ 219 (235)
....|-.- =.+|+|+
T Consensus 224 ~r~~~H~r--kh~reW~ 238 (251)
T COG4700 224 KRSRPHYR--KHHREWI 238 (251)
T ss_pred HhcchhHH--HHHHHHH
Confidence 44444332 2445554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.019 Score=33.45 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
|.++|.++..+| ++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g-~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQG-DYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHH
Confidence 444455555555 25555555555
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.06 Score=49.65 Aligned_cols=132 Identities=7% Similarity=-0.019 Sum_probs=101.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHH-HHHhC------CCCC--chhhHHHHHHHh
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRD-KIQIA------PKNE--SPWNYLRGAVVN 118 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~k-al~l~------p~~~--~aw~~~~g~il~ 118 (235)
...-+..-...+....-+.+.+...+....+..|.|. +|...+.. -+... |... -.|| ++|.|+.
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~-----kA~KlL~~sni~~~~g~~~T~q~~~cif~N-NlGcIh~ 294 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP-----KAMKLLLVSNIHKEAGGTITPQLSSCIFNN-NLGCIHY 294 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH-----HHHHHHHhcccccccCccccchhhhheeec-CcceEee
Confidence 3455555566677777888999999999999999875 55544332 12222 2222 2575 7999999
Q ss_pred cccccHHHHHHHHHHHH------------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 119 AGEKSERALALTADAIT------------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~------------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.++.|+-+..+|.+||+ ...+.....++.|..+..+|+ --.|..|+.++.+.+-.|+-.|.
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHHHhcCcHHHH
Confidence 99999999999999995 234567788999999999995 89999999999999999999999
Q ss_pred HHHHHH
Q psy4772 181 HRQIIV 186 (235)
Q Consensus 181 ~r~~~l 186 (235)
.++-+.
T Consensus 374 RlAEcC 379 (696)
T KOG2471|consen 374 RLAECC 379 (696)
T ss_pred HHHHHH
Confidence 887654
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.13 Score=48.43 Aligned_cols=140 Identities=9% Similarity=0.067 Sum_probs=109.0
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHhcccccHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES--PWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~--aw~~~~g~il~~~~~~~eAl 127 (235)
+.--.+.-.+++.+|.+.-.+..-+.--..+|+-. +|+.++..++-+.|.+.. +. ..+|.++.+.|++-+|-
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~-----~A~~Ca~~a~hf~~~h~kdi~l-LSlaTiL~RaG~sadA~ 269 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPY-----QAVECAMRALHFSSRHNKDIAL-LSLATVLHRAGFSADAA 269 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChh-----hhhHHHHHHhhhCCcccccchh-hhHHHHHHHcccccchh
Confidence 34445566778888887766665555555677644 688999999988888765 33 35788999999999988
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
-....|+.-.|-...-++..+.++-.++ .+...+-+|+.+.+..|..-++.-.+..++..+.+...++
T Consensus 270 iILhAA~~dA~~~t~n~y~l~~i~aml~-~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kl 337 (886)
T KOG4507|consen 270 VILHAALDDADFFTSNYYTLGNIYAMLG-EYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKL 337 (886)
T ss_pred heeehhccCCccccccceeHHHHHHHHh-hhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888999999998 4889999999999999988888888887777666655444
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.34 Score=48.64 Aligned_cols=134 Identities=7% Similarity=-0.006 Sum_probs=102.9
Q ss_pred hcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCC--CCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQ--FTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~--~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~ 121 (235)
..|+.|+..|+++-.-.|+. .+|.+..|+.+..+-. -++..+.+|+..|++.. -.|.-|--+ ..++.+++.+|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEY-LGKALVYQRLG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHH-HhHHHHHHHhh
Confidence 56899999999999999886 5677888988775432 22346778888888754 355666666 57888999999
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH----hHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNK----DLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~----~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
.++|.++++..|++..|.++..-.-+-.+..+|-+ .-..++.+.--++..-|.....-..+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEE 631 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHH
Confidence 99999999999999999999988888777777642 23567777777777788776554433
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.036 Score=48.38 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH-HHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH-RQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~-r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+.++....|.++..|..-.....+.+ .+.+--..|.++++.+|.|...|.. -..-+.-.++++.+...+.+++.++|+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k-~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKK-MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34445556677777766555555555 4666666777777777777777766 444556666777777777777777777
Q ss_pred ChHHhHH
Q psy4772 209 NYHAWQH 215 (235)
Q Consensus 209 n~~aw~~ 215 (235)
++..|.-
T Consensus 175 ~p~iw~e 181 (435)
T COG5191 175 SPRIWIE 181 (435)
T ss_pred CchHHHH
Confidence 7777753
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.99 Score=42.85 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=116.3
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-------hCCCCCchhhHHHHHHHhccc
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-------IAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-------l~p~~~~aw~~~~g~il~~~~ 121 (235)
-.+|..+++.+-. -.+..+-+.+|.++...+.=...+.++|+.++..+.. .. ++.+. +.+|.++....
T Consensus 228 ~~~a~~~~~~~a~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~-~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAK--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQ-YGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHh--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccc-cHHHHHHhcCC
Confidence 3567777776644 5688888999999887644344567789999988876 33 55566 57888888754
Q ss_pred -----ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-c---C
Q psy4772 122 -----KSERALALTADAITMNPANYTVWQYRREILKALN--KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-M---G 190 (235)
Q Consensus 122 -----~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~--~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l---~ 190 (235)
+++.|+..+.++-... ++.+.+..|.++..-. ++...|.++|..|.+. .+..|.+.++.++.. . .
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCC
Confidence 4677999999988875 4556677777777655 5578899999998764 566677777777744 2 2
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+...|..++++|.+++ +++|-.-++.+.
T Consensus 379 ~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred CHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 4789999999999998 666555555544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.7 Score=37.23 Aligned_cols=164 Identities=11% Similarity=-0.015 Sum_probs=119.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----cc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG----EK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~----~~ 122 (235)
+.+..++..+..+-. -..+.+....+.++.... ..+....+|+..|. ...+..++.+- +.+|.++... .+
T Consensus 55 ~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~-gv~~~~~~A~~~~~--~~a~~g~~~a~-~~lg~~~~~G~gv~~d 128 (292)
T COG0790 55 PDYAKALKSYEKAAE--LGDAAALALLGQMYGAGK-GVSRDKTKAADWYR--CAAADGLAEAL-FNLGLMYANGRGVPLD 128 (292)
T ss_pred ccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhcc-CccccHHHHHHHHH--HHhhcccHHHH-HhHHHHHhcCCCcccC
Confidence 456788888777776 222366777777766543 33345678999888 44556677777 5788888873 37
Q ss_pred cHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHh----hH--hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cC---C
Q psy4772 123 SERALALTADAITMNPAN-YTVWQYRREILKAL----NK--DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MG---E 191 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~-~~aw~~r~~~l~~l----~~--~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~---~ 191 (235)
..+|+..|.++.+..-.. ..+....+.++..- +- ....|+..+.++.... +..+.+.+|.++.. .| +
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 899999999999985444 45577777777763 21 2347999999988877 77788889977744 34 6
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+.+|+.+|++|.+... ..+++..+.+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~~~~ 233 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLGLMY 233 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence 8999999999999988 77888887333
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.7 Score=41.26 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=109.1
Q ss_pred cHHHHHHHHHhHHh-------cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 48 LFSDELSYIEGLIS-------HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 48 ~~~~Al~~~~~aL~-------~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
+.+.|+.++..+.. .. .+.+.+.+|.++....-...-..+.|+..+.++-.+...+.. +.+|.++...
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~---~~lg~~~~~g 338 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQ---YLLGVLYETG 338 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHH---HHHHHHHHcC
Confidence 67999999999987 33 677899999999886422211456899999999888755554 6788888776
Q ss_pred c---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCCch
Q psy4772 121 E---KSERALALTADAITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MGEPD 193 (235)
Q Consensus 121 ~---~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~~~ 193 (235)
. +...|.++|..|... .+..|..+.+.|+..- .++.+.|..++.++-+++ ++.|..-++..+.. .+++.
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~ 414 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYD 414 (552)
T ss_pred CccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccccc
Confidence 5 468999999999875 5777888888887664 235799999999999998 77777777766633 37766
Q ss_pred HHHHHHHHHHH
Q psy4772 194 EELALTAAILA 204 (235)
Q Consensus 194 ~Al~~~~~ai~ 204 (235)
.++-.+....+
T Consensus 415 ~~~~~~~~~a~ 425 (552)
T KOG1550|consen 415 TALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHH
Confidence 66554444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.82 Score=39.91 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=87.7
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-hCCCC-
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA----NYTVWQYRREILKALNKDLHQELKYIGEKIK-ENSKN- 175 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~----~~~aw~~r~~~l~~l~~~~eeal~~~~~al~-~~P~n- 175 (235)
.......| ...+.+..+.|.++-|...+.++...++. .+.+-...+.++-..|+ -.+|+..++..+. ...+.
T Consensus 142 ~~~~~~~~-l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETW-LKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHH-HHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcc
Confidence 44444566 35667777889999999999999987632 45666667777877784 6889998888887 11111
Q ss_pred --------------------------------hHHhHHHHHHHHHc------CCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 176 --------------------------------YQVWRHRQIIVEWM------GEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 176 --------------------------------~~aw~~r~~~l~~l------~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
..++..+|.....+ +..++++..|+.|+.++|....+|++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 13555666666666 6778899999999999999999999999
Q ss_pred HHH
Q psy4772 218 WVI 220 (235)
Q Consensus 218 ~~l 220 (235)
...
T Consensus 300 ~~~ 302 (352)
T PF02259_consen 300 LFN 302 (352)
T ss_pred HHH
Confidence 888
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.17 Score=46.71 Aligned_cols=130 Identities=11% Similarity=0.069 Sum_probs=98.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
-|+...|-+-+..+|+..|..|..-..++.+...+|.|+ .+++...-+-..-..-..+... +-.-+..+|++.+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye-----~~~~~~s~~~~~~~s~~~~~~~-~~r~~~~l~r~~~ 375 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYE-----QAYQDISDVEKIIGTTDSTLRC-RLRSLHGLARWRE 375 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHH-----HHHHHhhchhhhhcCCchHHHH-HHHhhhchhhHHH
Confidence 478889999999999999999999999999999999885 3444444333333333333322 3356778899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
|+..-.-.|.-.-+.+.+..--+-.-..|+ .+++++..+++++.++|.--..|.+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~-~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQ-LFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHh-HHHHHHHHHHHHhccCChhcccceee
Confidence 999988888777777777666666667787 59999999999999999777666553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.18 Score=38.10 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=45.1
Q ss_pred hcHHHHHHHHHhHHhcCCCc------------hhHhhhHHHHHhhcCCCCHH--HHHHHHHHHHHHHHhCCCCCchhh--
Q psy4772 47 NLFSDELSYIEGLISHDVRN------------NSAWTQRYFVINHTTQFTPE--VIQREIDYCRDKIQIAPKNESPWN-- 110 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~------------~~a~~~~g~~l~~~~~~~e~--~~~~Al~~~~kal~l~p~~~~aw~-- 110 (235)
+.|++|.+.+++|+.....- +-.+..++-++..+|+|++. ..++|+.+|++-=.++.+....|.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 67899999999999874332 23344455678888988642 233445555544445544444441
Q ss_pred -HHHHHHHhcccccHHHHHHHHHH
Q psy4772 111 -YLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 111 -~~~g~il~~~~~~~eAl~~~~~a 133 (235)
+.++..+...|+.++|+..|.++
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Confidence 12333334444444444444443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.24 Score=42.44 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=63.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
...++..-+ .++.|+.+.++.+.++|.++.-|.-||.++.++|.+.-|++.+...++.=|+++.+-.-+.-+..
T Consensus 187 lk~~~~~e~-~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 187 LKAALLREL-QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHHHHHhh-chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444445 48999999999999999999999999999999999999999999999999999988777666553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.49 Score=35.75 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCc------------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNES------------PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKA 153 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~------------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~ 153 (235)
+.+++|.+.|.++....-.-|. ++ -.+...+..+|+|+++|..-+++|.. .+-||.+.+.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~ch-A~Ls~A~~~Lgry~e~L~sA~~aL~Y-------FNRRGEL~qd 94 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCH-AGLSGALAGLGRYDECLQSADRALRY-------FNRRGELHQD 94 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHH-HHHHHHHHHTT-HHHHHHHHHHHHHH-------HHHH--TTST
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHH-------Hhhccccccc
Confidence 4466788889998887655441 12 12345667788888888888887751 2333443333
Q ss_pred hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 154 LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 154 l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
-|+.|=. +-++|+.++..+|+.++|+..|+.+.++
T Consensus 95 eGklWIa-----------------aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIA-----------------AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHH-----------------HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3322211 3367888888899999999988888764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.046 Score=47.77 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH-HHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY-RREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~-r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
++-..-|.++..|. .-..-..+.+.+.+--..|..+|.++|.+++.|.. -+.=+...+ +++.+...+.+.|+.+|.+
T Consensus 98 R~tnkff~D~k~w~-~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-ni~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 98 RSTNKFFNDPKIWS-QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-NIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred hhhhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-cHHHHHHHHHhhhccCCCC
Confidence 34445555666662 33222333455556666666666666666666655 233333334 3566666666666666666
Q ss_pred hHHhH
Q psy4772 176 YQVWR 180 (235)
Q Consensus 176 ~~aw~ 180 (235)
+..|.
T Consensus 176 p~iw~ 180 (435)
T COG5191 176 PRIWI 180 (435)
T ss_pred chHHH
Confidence 66664
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.22 Score=46.11 Aligned_cols=128 Identities=11% Similarity=0.057 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
+++-.|-+-...+|...|..|..- ..++.|...+|.|+.++....-+-..-..-..+...|-.-+..|++ +.+|+..-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i-~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r-~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLI-QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR-WREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhh-HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh-HHHHHHHH
Confidence 344456667778899999999877 4678899999999999998877766666666777778888888995 99999998
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
...+.-.-..+....--+-.-..+|-+++++...++++.++|.-.+.|.+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 88887777777766655666677888999999999999999998888865
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.54 Score=36.25 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHH-cCCC-ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 123 SERALALTADAIT-MNPA-NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 123 ~~eAl~~~~~al~-l~P~-~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
.++-+.+++.+++ -.|. .-...++++.-+.++++ |+.++.+++..|+.+|+|.++-.-+..+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4555555555554 2221 12344455555555553 5555555555555555555555444433
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.4 Score=39.82 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhhH------hHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 141 YTVWQYRREILKALNK------DLHQELKYIGEKIKENSK------NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~------~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+..+...+|++..++. .+..|+..|.++++.... .....+..|-+..++|++++|+.+|.++|..--.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3456667888877763 245566677777664432 2457788999999999999999999999985443
Q ss_pred C
Q psy4772 209 N 209 (235)
Q Consensus 209 n 209 (235)
+
T Consensus 198 s 198 (214)
T PF09986_consen 198 S 198 (214)
T ss_pred C
Confidence 3
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.4 Score=44.27 Aligned_cols=131 Identities=13% Similarity=0.124 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcc----c---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 86 EVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAG----E---KSERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~----~---~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
..++.|+..|.++-.--|.- ++|- ++.|..+... | .+.+||.-|++. .--|.-+-=+..++.+|++++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQ-FRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHH-HHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhh
Confidence 46778999999988888654 4566 6778776542 2 367888877764 345777778889999999999
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC-----chHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 156 KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-----PDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 156 ~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~-----~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+++|+++++.-|+++.|.++..=.-+--+..++-. ...++.+.--++..-|.....=.-+..+
T Consensus 567 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (932)
T PRK13184 567 -EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFL 634 (932)
T ss_pred -hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 59999999999999999999765555544444332 2355566666666777766554444443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.29 Score=41.96 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.++...++++.|+.+.++.+.++|.++..+.-||.+|.++| -+.-|++.++..++.-|+.+.+-.-|..+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-CYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-CchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 44555678899999999999999999999999999999999 589999999999999999888776665544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.11 Score=43.72 Aligned_cols=56 Identities=5% Similarity=0.093 Sum_probs=30.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~ 107 (235)
++.+.|.+.|++||.+.|+....|+..|..-...|+++ .|...|.+.|+++|.+..
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~d-----aAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFD-----AAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHH-----HHHHHHHHHHcCCccccc
Confidence 34455555555555555555555555555555555443 455555555555555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.18 Score=29.41 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+++++|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35677777777777777777777777654
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.85 Score=37.88 Aligned_cols=91 Identities=5% Similarity=0.053 Sum_probs=57.6
Q ss_pred cHHHHHHHHHhHHhc------CC-CchhHhhhHHHHHhhcCCCCH--HHHHHHHHHHHHHHHhCCCCC-----chhhHHH
Q psy4772 48 LFSDELSYIEGLISH------DV-RNNSAWTQRYFVINHTTQFTP--EVIQREIDYCRDKIQIAPKNE-----SPWNYLR 113 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~------~P-~~~~a~~~~g~~l~~~~~~~e--~~~~~Al~~~~kal~l~p~~~-----~aw~~~~ 113 (235)
.+++|++.|.-||-. .| .-+..+...+|++..+|+-+. ..+++|++.|.++++....-. ....|.+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 456777766665543 11 225677788888888776322 346778888888887664411 1222567
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCC
Q psy4772 114 GAVVNAGEKSERALALTADAITMNP 138 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P 138 (235)
|.+..+.|++++|+..|.+++..--
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 7777777777777777777776543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.25 Score=40.41 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=30.2
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.|++.++...|.+++|+...+..-.-.-. +..-.-||.++...|+ -.+|+..|+++++.++.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~-k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGD-KQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCc-hHHHHHHHHHHHHccCCh
Confidence 34555555555555555544433221100 1113345566666553 455666666666555443
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=93.02 E-value=8.4 Score=36.60 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=95.5
Q ss_pred cHHHHHHHHHhHHhc------------CCCchhHhhhHHHHHhhcCCCCH--HHHHHHHHHHHHHHHhCCCCCc-hhh--
Q psy4772 48 LFSDELSYIEGLISH------------DVRNNSAWTQRYFVINHTTQFTP--EVIQREIDYCRDKIQIAPKNES-PWN-- 110 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~------------~P~~~~a~~~~g~~l~~~~~~~e--~~~~~Al~~~~kal~l~p~~~~-aw~-- 110 (235)
-|++|...|..|... .|...+.+...+.+...+|+.+. .-+++++=.++.++. |.+.- .|+
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~h--p~F~~~sg~cR 330 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALH--PNFIPFSGNCR 330 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhc--ccccccccccc
Confidence 357777777777655 67778888999999999998754 357788888888774 22211 111
Q ss_pred ---------------HHHHHHHhcccccHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHhhHhHHHHHHHHHHH-----H
Q psy4772 111 ---------------YLRGAVVNAGEKSERALALTADAITMNPA-NYTVWQYRREILKALNKDLHQELKYIGEK-----I 169 (235)
Q Consensus 111 ---------------~~~g~il~~~~~~~eAl~~~~~al~l~P~-~~~aw~~r~~~l~~l~~~~eeal~~~~~a-----l 169 (235)
++.-.-+..+|=+..|++.++-++.++|. ++.+-...-.+|-=..+.|.==+.+++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11112344567799999999999999999 77766554444322222222222222222 2
Q ss_pred HhCCCChHHhHHHHHHHHHcCC---chHHHHHHHHHHHhCCCC
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGE---PDEELALTAAILAQDAKN 209 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~---~~~Al~~~~~ai~ldp~n 209 (235)
..-|+-.-.. -++..+..... -+.|+..+.+|+...|.-
T Consensus 411 ~~~PN~~yS~-AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 411 SQLPNFGYSL-ALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred hhcCCchHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 2233322111 12222322222 568889999999999943
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=92.91 E-value=2.1 Score=36.48 Aligned_cols=155 Identities=9% Similarity=0.068 Sum_probs=72.0
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC--HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh------c
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT--PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN------A 119 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~--e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~------~ 119 (235)
.|++|--++.+|+.....|...|+ -+..+...+-+. -..+.++..+++|+..+--++.++=. -+..+. +
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfh-AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt--AAmaleKAak~le 122 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFH-AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT--AAMALEKAAKALE 122 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch--HHHHHHHHHHHhh
Confidence 556666666666665555554332 222221111000 01234566666666665544443321 112222 2
Q ss_pred ccccHHHHHHHHHHHHcC---CCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC------CCChHHhHHHHHHHH
Q psy4772 120 GEKSERALALTADAITMN---PAN---YTVWQYRREILKALNKDLHQELKYIGEKIKEN------SKNYQVWRHRQIIVE 187 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~---P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~------P~n~~aw~~r~~~l~ 187 (235)
.-..++||.+|++++.+- ... +..+...+.+|.++.+ |++|-..+.+-.... |....+......++.
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 234566666666665432 111 1222334555555553 666666666655532 222223333333444
Q ss_pred HcCCchHHHHHHHHHHHhC
Q psy4772 188 WMGEPDEELALTAAILAQD 206 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ld 206 (235)
...+|..|-.+++.-..+.
T Consensus 202 ~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hHHHHHHHHHHhcchhcCc
Confidence 4446666666666555443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.25 Score=41.48 Aligned_cols=52 Identities=13% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
.|.+.|++++.+-|+....| ++.|....+.|+.+.|.+.+++.|+++|.+..
T Consensus 13 aaaely~qal~lap~w~~gw-fR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 13 AAAELYNQALELAPEWAAGW-FRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred HHHHHHHHHhhcCchhhhhh-hhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 45555666666666666666 45555555556666666666666666655543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.41 Score=28.03 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=22.7
Q ss_pred HHhHHHHHHHHHcCCchHHHHH--HHHHHHhCCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELAL--TAAILAQDAKN 209 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~--~~~ai~ldp~n 209 (235)
..|+..|..+...|++++|++. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3567777777888888888888 44777777764
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.7 Score=41.64 Aligned_cols=92 Identities=9% Similarity=-0.049 Sum_probs=77.0
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCCh------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANY------TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+.-+.+..+|..+++.|...++.-|.+. .......-||.+|.+ ++.|++.+++|=+.+|.++-.-.....+.
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 45667778999999999999998777654 355567788888885 99999999999999999998888888888
Q ss_pred HHcCCchHHHHHHHHHHHh
Q psy4772 187 EWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~l 205 (235)
..-+.-++|+.+.......
T Consensus 439 ~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHhcchHHHHHHHHHHHhh
Confidence 8888999999988776553
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.52 Score=39.89 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
|..+|.+|+.+.|++-..|+++|.+...-+. .-+|+-+|-|++-..--.+.|..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~-~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD-DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5667777777777777777777777777663 5666666666665443446677777666655
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.2 Score=36.54 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=70.7
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCC-CChHH--HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHH--hHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNP-ANYTV--WQYRREILKALNKDLHQELKYIGEKIKENSKNYQV--WRHRQIIVE 187 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P-~~~~a--w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~a--w~~r~~~l~ 187 (235)
++......+++++|+...+.++..-- ++..+ =..++.++..+++ +++|+..++..-. .++.+ ---||.++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~---~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKE---ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccc---ccHHHHHHHHhhhHHH
Confidence 56677788999999999988885322 22222 2345788888885 8999998876432 33333 567999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCChH
Q psy4772 188 WMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
..|+-.+|+..|++|++.++....
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChHH
Confidence 999999999999999999865544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.77 E-value=3 Score=33.01 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=77.8
Q ss_pred hcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH
Q psy4772 118 NAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
...+..+++...+..+--+.|+.+..-..-|+++...| +|.+|+..++.+....|..+-+=-.+++++..+++.+== .
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr-~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRG-DWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR-R 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH-H
Confidence 34678899999999999999999999999999999999 599999999999999999998888889999999985411 1
Q ss_pred HHHHHHHhCCCChHHhHHHHHHH
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+.+.+++..+ ++.+-.-.+.++
T Consensus 99 ~A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 99 YADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHH
Confidence 2344555554 455444444333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.8 Score=33.23 Aligned_cols=82 Identities=12% Similarity=-0.064 Sum_probs=67.2
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.++.....+-...+.. .++...+..+--+.|+.+..- ..-|+++...|++.+|+..++.+.+..|..+.+=--.
T Consensus 11 ~gLie~~~~al~~~~~-----~D~e~lL~ALrvLRP~~~e~~-~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDP-----DDAEALLDALRVLRPEFPELD-LFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHccCCh-----HHHHHHHHHHHHhCCCchHHH-HHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 4455555555566644 357778888888999999988 4689999999999999999999999999999888888
Q ss_pred HHHHHHhh
Q psy4772 148 REILKALN 155 (235)
Q Consensus 148 ~~~l~~l~ 155 (235)
+.|+..++
T Consensus 85 A~CL~~~~ 92 (160)
T PF09613_consen 85 ALCLYALG 92 (160)
T ss_pred HHHHHHcC
Confidence 89998887
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.69 Score=39.13 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKA 153 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~ 153 (235)
.+|.+|+.+.|.+..+|| .+|.+....|+.=+|+-.|-+++.-.-.++.|..++..++.+
T Consensus 3 ~~Y~~A~~l~P~~G~p~n-QLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 3 RYYRKAIRLLPSNGNPYN-QLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHH-TTBSHHHH-HHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCccc-chhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 344444444444444442 344444444444444444444444333334444444444443
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.55 Score=27.25 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.+++++|.++...|+ +++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGR-YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-cchhhHHHHHHHHH
Confidence 356677777777773 77777777776653
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=91.09 E-value=4.3 Score=40.28 Aligned_cols=165 Identities=10% Similarity=0.086 Sum_probs=106.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC----------HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT----------PEVIQREIDYCRDKIQIAPKNESPWNYLRGAV 116 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~----------e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i 116 (235)
|+.+.|.....-+ +.-.+|.|++..-....+.+ .++-- ....++.+ +|+..++ ..+.+
T Consensus 742 G~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga---RAlR~a~q-~~~e~ea---kvAvL 809 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA---RALRRAQQ-NGEEDEA---KVAVL 809 (1416)
T ss_pred ccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH---HHHHHHHh-CCcchhh---HHHHH
Confidence 6667776554332 34678988887766555543 22211 22333433 4444443 34566
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
-.++|..++|+..|.+.-+.+ -+-..|+..| .|.+|++.-+.-=+++-+| .+++.+.-+...++.+.|+
T Consensus 810 AieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~--Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD--------LLNKLYQSQG-MWSEAFEIAETKDRIHLRN--TYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcc-cHHHHHHHHhhccceehhh--hHHHHHHHHHhhccHHHHH
Confidence 677899999999999877643 1223456666 4788777655543344343 7888888888889999999
Q ss_pred HHHHHH----------HHhCC----------CChHHhHHHHHHHhhcCCccccccccc
Q psy4772 197 ALTAAI----------LAQDA----------KNYHAWQHRQWVINLLDDDDRGVLEYE 234 (235)
Q Consensus 197 ~~~~~a----------i~ldp----------~n~~aw~~r~~~l~~l~~~~~~~~~~~ 234 (235)
++|+++ +.-+| ++.+.|..-|.-+...|.++.|...|.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 988875 33344 456677777777888888888877664
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.38 Score=28.14 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=17.4
Q ss_pred HHHHHHHhcccccHHHHHH--HHHHHHcCCC
Q psy4772 111 YLRGAVVNAGEKSERALAL--TADAITMNPA 139 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~--~~~al~l~P~ 139 (235)
+..|..+...|++++|++. |.-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566666666677777776 3366666654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=90.28 E-value=3.8 Score=34.99 Aligned_cols=149 Identities=8% Similarity=0.037 Sum_probs=87.4
Q ss_pred HHHHHHHHhHHhc-CCC---chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHH------HHHHHhc
Q psy4772 50 SDELSYIEGLISH-DVR---NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYL------RGAVVNA 119 (235)
Q Consensus 50 ~~Al~~~~~aL~~-~P~---~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~------~g~il~~ 119 (235)
.++.+..-..+.. .|+ -++.+..-+.++...++|+ +|-.++.+++.-..++-..| +. .|.++.+
T Consensus 10 ~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~fe-----KakdcLlkA~~~yEnnrslf-hAAKayEqaamLake 83 (308)
T KOG1585|consen 10 SEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFE-----KAKDCLLKASKGYENNRSLF-HAAKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHH
Confidence 4445444444442 222 1344555566666777664 67777888886666666555 22 3445566
Q ss_pred ccccHHHHHHHHHHHHcCCCC-----hH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------HHhHHHHHHHH
Q psy4772 120 GEKSERALALTADAITMNPAN-----YT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNY------QVWRHRQIIVE 187 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~-----~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------~aw~~r~~~l~ 187 (235)
+..+.|+..+++++..+.-.+ .. ++-.-+.++++.. -++|+.+|++++.+--..- ..+-..+.++.
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~--Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK--PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 677888888888888764222 11 2222344444443 5778888888877765443 23444556666
Q ss_pred HcCCchHHHHHHHHHHHhC
Q psy4772 188 WMGEPDEELALTAAILAQD 206 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ld 206 (235)
++.++.+|-..+.+-....
T Consensus 162 rl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred hhHHhhHHHHHHHHhhhHH
Confidence 6777777777766665554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.73 E-value=1.6 Score=39.11 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc--------------------------CCCChHHH---
Q psy4772 94 YCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM--------------------------NPANYTVW--- 144 (235)
Q Consensus 94 ~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l--------------------------~P~~~~aw--- 144 (235)
.....|+.+|-|..+. ...+.++...|+.+.|-++.++||-. .|.|-.-|
T Consensus 28 ~l~~ll~~~PyHidtL-lqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTL-LQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 3456789999999999 68999999999988888877777631 11222222
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-ChHHhHHHHHHH-HHcCCchHHHHHHHHHHHh
Q psy4772 145 QYRREILKALNKDLHQELKYIGEKIKENSK-NYQVWRHRQIIV-EWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 145 ~~r~~~l~~l~~~~eeal~~~~~al~~~P~-n~~aw~~r~~~l-~~l~~~~~Al~~~~~ai~l 205 (235)
+.....+.+-| -+..|+++++-++.+||. ++.+-......+ .+.+.++--+++++.....
T Consensus 107 ~r~i~~L~~RG-~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 107 FRYIQSLGRRG-CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 22222233334 378888888888888888 666555444444 6677777777777766665
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=89.40 E-value=12 Score=31.72 Aligned_cols=127 Identities=7% Similarity=-0.000 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCchh---h--HHHHHHHhc-ccccHHHHHHHHHHHHcCCC-ChHHHHHH-----HHHHHHh
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPW---N--YLRGAVVNA-GEKSERALALTADAITMNPA-NYTVWQYR-----REILKAL 154 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw---~--~~~g~il~~-~~~~~eAl~~~~~al~l~P~-~~~aw~~r-----~~~l~~l 154 (235)
..++|++++.+++.+-.+-...- + .-+|.++.. +.+++.|+.+|+.+-+.... ...+--++ +..--.+
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 34678888888888765544311 0 124555544 46788999999988875432 22222232 2223335
Q ss_pred hHhHHHHHHHHHHHHHhCCCChH-HhHHHHHH------HHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 155 NKDLHQELKYIGEKIKENSKNYQ-VWRHRQII------VEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 155 ~~~~eeal~~~~~al~~~P~n~~-aw~~r~~~------l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
+ .+.+|+..|+++.+-.-+|.- -|.-++.+ ...-.+.-.+-..+++-.+++|.+...-.
T Consensus 168 e-qY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 168 E-QYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred H-HHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 6 489999999998886665553 33333333 33335666777788888889999887643
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=89.29 E-value=16 Score=32.71 Aligned_cols=163 Identities=11% Similarity=0.032 Sum_probs=118.0
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC---------------------HHHHHHHHHHHHHHHHhCCCCCc
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT---------------------PEVIQREIDYCRDKIQIAPKNES 107 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~---------------------e~~~~~Al~~~~kal~l~p~~~~ 107 (235)
-.+|+..-+-.+.+-|..++++-..+.++..-.+.. -.-+.+++...++++...- +.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~--pG 289 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR--PG 289 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC--CC
Confidence 389999999999999999999999998887655421 1357788888888887665 55
Q ss_pred hhhHHHHHHHh---c-----ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--CCCChH
Q psy4772 108 PWNYLRGAVVN---A-----GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE--NSKNYQ 177 (235)
Q Consensus 108 aw~~~~g~il~---~-----~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--~P~n~~ 177 (235)
.+. ..+.|.. . .-++..-..+|+....+.|+-.-. .||+-++-.-.- -+.++..++.+... =.....
T Consensus 290 PYq-lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~-LNRAVAla~~~G-p~agLa~ve~L~~~~~L~gy~~ 366 (415)
T COG4941 290 PYQ-LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVT-LNRAVALAMREG-PAAGLAMVEALLARPRLDGYHL 366 (415)
T ss_pred hHH-HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEe-ehHHHHHHHhhh-HHhHHHHHHHhhcccccccccc
Confidence 552 2333321 1 123566667777777777776555 455555544331 57788888877765 445667
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
.|.-|+-++.++|+.++|...|++||.+-++-...-+-+
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 888899999999999999999999999999887654433
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.7 Score=38.69 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=50.7
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+.+-.+.+.+..|+..+..+++.+++...+++-|+..+..+. .+++|+..+..+....|.+...-.-...+-
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~-~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLK-NYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhh-chhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 4455566667777777777777777777777777777777777 477777777777777777765544443333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.31 E-value=3 Score=36.08 Aligned_cols=54 Identities=7% Similarity=-0.018 Sum_probs=46.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 150 ILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 150 ~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.+...+ .++...+.+++++..+|.+-.+|..+.-++...|+...|+..|++.-.
T Consensus 162 ~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 162 ALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 333444 478889999999999999999999999999999999999998887744
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=88.23 E-value=24 Score=33.58 Aligned_cols=190 Identities=9% Similarity=-0.013 Sum_probs=125.0
Q ss_pred cCCCCCCCCCCchhHhhhhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC-C
Q psy4772 25 LRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA-P 103 (235)
Q Consensus 25 ~~~~~~~~~~~~~~~~~y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~-p 103 (235)
|.|+.++.-.+......|....|+++...-.|++++--..-..+.|..-..-+...|..+- |-.....+.++. |
T Consensus 289 vkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~-----~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 289 VKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL-----ANNVLARACKIHVK 363 (577)
T ss_pred cCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH-----HHHHHHhhhhhcCC
Confidence 4444444433333344555667899999999999999999999999999988888876532 222334444443 3
Q ss_pred CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH--HHHHHHhCCCChH----
Q psy4772 104 KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY--IGEKIKENSKNYQ---- 177 (235)
Q Consensus 104 ~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~--~~~al~~~P~n~~---- 177 (235)
+.+... ..-+.+-...|.+..|...++++..--|+...+-..+.....+.|. .+.+-.. +-..+...-.|..
T Consensus 364 ~~~~i~-L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~-~~~~~~~~~l~s~~~~~~~~~~i~~~ 441 (577)
T KOG1258|consen 364 KTPIIH-LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN-LEDANYKNELYSSIYEGKENNGILEK 441 (577)
T ss_pred CCcHHH-HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc-hhhhhHHHHHHHHhcccccCcchhHH
Confidence 333333 2233344457899999999999998889999998888888888884 5665531 1112222222222
Q ss_pred HhHHHHHHH-HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 178 VWRHRQIIV-EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 178 aw~~r~~~l-~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
.....++.. .-.++.+.|...+..++..+|.+-..|.-...+..
T Consensus 442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 442 LYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 223333333 33556788899999999999999888776655543
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=87.87 E-value=20 Score=32.10 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=93.7
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHH---HhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFV---INHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~---l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..++++..+++|+...- +..|...+-+ ......-+.-+|..=...|+....+.|+=....| ++.++....-.+
T Consensus 271 lI~eg~all~rA~~~~~--pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LN--RAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR--PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLN--RAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeeh--HHHHHHHhhhHH
Confidence 45888889999887654 3333333322 2222222222455556788999999998888774 678888777778
Q ss_pred HHHHHHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 125 RALALTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 125 eAl~~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
-+|...+.+... =..+...|.-|+.++.+||+ .++|...|+++|.+-++-...-+-+
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr-~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGR-VEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCC-hHHHHHHHHHHHHhcCChHHHHHHH
Confidence 888888887776 45677788899999999995 8999999999999998886654433
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=87.63 E-value=20 Score=32.06 Aligned_cols=174 Identities=9% Similarity=0.054 Sum_probs=98.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC---------------------CCch
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK---------------------NESP 108 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~---------------------~~~a 108 (235)
.+-++.-..||.+||+.+.++..++---. .-+-+|...++++|+.-.. +...
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa-------~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv 273 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEA-------TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV 273 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence 45567777899999999999876652111 1122344444444432111 1111
Q ss_pred hh---HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-----CCCChHHhH
Q psy4772 109 WN---YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE-----NSKNYQVWR 180 (235)
Q Consensus 109 w~---~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-----~P~n~~aw~ 180 (235)
.. .+++.|-.++|+..||++.+....+-.| -...++--..+++.+-+ -.|...++.++.+ -|++...-+
T Consensus 274 l~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p-l~t~lniheNLiEalLE--~QAYADvqavLakYDdislPkSA~icY 350 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP-LLTMLNIHENLLEALLE--LQAYADVQAVLAKYDDISLPKSAAICY 350 (556)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccccCcchHHHHH
Confidence 11 1346677789999999999998888777 44444444444444431 3455556665553 356554443
Q ss_pred HHHHHHHH-------------cCC---chHHHHHHHHHHHhCCCChHHhHHHHHHH----hhcCCcccccccc
Q psy4772 181 HRQIIVEW-------------MGE---PDEELALTAAILAQDAKNYHAWQHRQWVI----NLLDDDDRGVLEY 233 (235)
Q Consensus 181 ~r~~~l~~-------------l~~---~~~Al~~~~~ai~ldp~n~~aw~~r~~~l----~~l~~~~~~~~~~ 233 (235)
--+.+-.+ .|- -..|++.+.+|.+-+|.-+....-...+. -+|++-+++-+-|
T Consensus 351 TaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~kslIlPPEHiLKRGDSEAlAY 423 (556)
T KOG3807|consen 351 TAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAY 423 (556)
T ss_pred HHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhccCCHHHHhhcccHHHHHH
Confidence 33222111 111 13688899999999999887665544443 2555555444433
|
|
| >PF13226 DUF4034: Domain of unknown function (DUF4034) | Back alignment and domain information |
|---|
Probab=87.57 E-value=18 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCc
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~ 192 (235)
.+.|...+.+|+.++|+...+...+..+-..+|.+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 57788888888888888888888888777777764
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=87.50 E-value=17 Score=30.95 Aligned_cols=106 Identities=8% Similarity=0.056 Sum_probs=64.3
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCC---hHH---HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------HHhHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPAN---YTV---WQYRREILKALNKDLHQELKYIGEKIKENSKNY------QVWRH 181 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~---~~a---w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------~aw~~ 181 (235)
+.++. .++.++|+.+.++++++.-+- ..+ ....+.+|+.--.+++.|+.+|+.+-+-....- .....
T Consensus 81 ~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 81 ANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred HHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 33444 458999999999999864221 111 112344554421257888888888876443221 23344
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChH-HhHHHHHHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYH-AWQHRQWVI 220 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~-aw~~r~~~l 220 (235)
.+..-..++.|.+|++.|+.+..---+|.. =|.-+++++
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyfl 199 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFL 199 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHH
Confidence 444556688899999999998875555443 344455554
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=87.12 E-value=3.7 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
.|++|++.+.+++...|+++..-.+|..+...+.+
T Consensus 28 ~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 28 NYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 34556666666677888888888888887776653
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.00 E-value=24 Score=32.26 Aligned_cols=118 Identities=13% Similarity=-0.017 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH-HHHHHHH-----HhhHhHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ-YRREILK-----ALNKDLHQEL 162 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~-~r~~~l~-----~l~~~~eeal 162 (235)
+-|..+-..+-.+-|.-+.+|. ..-......|+++.||++.+......--....-. .|+-++. .+.-+-..|.
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~-AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAAR-ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHH-HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 3455566666666666666663 2223444556666666655544332111111111 1111111 1111234455
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 163 KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 163 ~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
.+-..+.++.|+-..+-.--+.++.+.|+.-++-..++.+.+.+|
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 555556666666666555555566666655555555555555444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.37 E-value=8.8 Score=26.70 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=32.4
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHH---HHHhhHhHHHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI---LKALNKDLHQELKYIGE 167 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~---l~~l~~~~eeal~~~~~ 167 (235)
+|.-+......++||....++|+..++....|.-+|.+ +...|+ +.+.+.+--+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk-yr~~L~fA~~ 68 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK-YREMLAFALQ 68 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44455566667777777777777776666655554443 444453 6666665433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13226 DUF4034: Domain of unknown function (DUF4034) | Back alignment and domain information |
|---|
Probab=84.69 E-value=3.9 Score=35.38 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.+.|...+.+|++++|+-..+...+..+-..+|.
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 3788899999999999999999988877666654
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=84.32 E-value=2.4 Score=22.82 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHH
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRY 74 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g 74 (235)
++.+...|++++...|.++..|....
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 45556666666666666666665443
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.87 E-value=27 Score=29.93 Aligned_cols=173 Identities=10% Similarity=-0.016 Sum_probs=95.1
Q ss_pred hhcHHHHHHHHHhHHhcC----CCc----hhHhhhHHHHHhhcC-CCCHH--HHHHHHHHHHHHHHhCCCCCchhhHHHH
Q psy4772 46 CNLFSDELSYIEGLISHD----VRN----NSAWTQRYFVINHTT-QFTPE--VIQREIDYCRDKIQIAPKNESPWNYLRG 114 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~----P~~----~~a~~~~g~~l~~~~-~~~e~--~~~~Al~~~~kal~l~p~~~~aw~~~~g 114 (235)
.|+++-|..++.++=... |+. +...++-|.-+...+ +++++ -+++|.+.+++.-..+..++..-. .+.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e-lr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE-LRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH-HHH
Confidence 366777777777765544 433 345566666666666 65432 133444444333333455555442 344
Q ss_pred HHHhcc-------c---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 115 AVVNAG-------E---KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQI 184 (235)
Q Consensus 115 ~il~~~-------~---~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~ 184 (235)
.++..+ + ..++|+...+.+-.-.|+.+..+.-+-.++.+.+ ..++..+.+.+.+.--+-.-..+-....
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~-~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF-DEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC-ChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 554432 1 2355555666666667887887766666666655 4677777888877754422222222222
Q ss_pred HHHH--cCCchHHHHHHHHHHH--hCCCChHHhHHHHHHHh
Q psy4772 185 IVEW--MGEPDEELALTAAILA--QDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 185 ~l~~--l~~~~~Al~~~~~ai~--ldp~n~~aw~~r~~~l~ 221 (235)
.+.. -.....+..++++.|. .+|...+ |.-+..+..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~ 203 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTR 203 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHH
Confidence 2211 1234677788888776 4444444 777776664
|
It is also involved in sporulation []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.56 E-value=17 Score=28.49 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=62.6
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD 193 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~ 193 (235)
.+...++-...+.+=-+.|+...+-..-|+++...| .|.+|+..++.+...-|..+-+--.+++++..+|+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg-~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARG-NYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcC-CHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 567788888888888889999999999999999999 5999999999999888888877778888888888854
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=83.02 E-value=44 Score=31.82 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
+--+.+++++.+.-.+++.-....-....+.+-.+-|...|.+|=+.--.-.+++..-+.+=....++.+-|...++--+
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGL 428 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGL 428 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 44466677777666666532122222223333345566666665544333345555555544444445677777777777
Q ss_pred HhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+.+++.+.--+.-...+.++++-..+...|++++..
T Consensus 429 kkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 429 KKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 777777766666666667777777777777777765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.83 E-value=9.7 Score=29.85 Aligned_cols=66 Identities=11% Similarity=-0.062 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
.++......+=-+-|+.+..-. .-|+++..+|++.||+..+..+.+--|..+.+=--.++|+.-++
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~-~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDM-FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHHHHhCCCccccch-hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 3566667777778999999884 57999999999999999999999998888777777778887777
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=82.62 E-value=2.8 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhCCCChHHhH
Q psy4772 160 QELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 160 eal~~~~~al~~~P~n~~aw~ 180 (235)
.+...|+++++..|.+...|.
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 5 RARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHCCCChHHHH
Confidence 333344444444444444443
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=82.38 E-value=13 Score=35.40 Aligned_cols=129 Identities=9% Similarity=0.043 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
.+.+-..|...|..-|-.+.-| -.-+..-.++|..+.+++.|++++.--|-+...|.+--..+.+...+-+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW-~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYW-KKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3556667777777777777777 345555566777777777777777777777777776555544443233444456666
Q ss_pred HHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 168 KIKENSKNY---QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 168 al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
|....-.++ ..|-...-.....++...-...|++.++. |.+.-.-++..+
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~~~~~f~~f 192 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQLNRHFDRF 192 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhHhHHHHHHH
Confidence 665444433 45666555556666666777777777765 444444444433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.98 E-value=3.1 Score=36.28 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
.+..+...|.+.+|+++.++++.+||-+.+.|.-+..++..+|+.-++..-|
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 3445566778888888888888888888888888888888888865554433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.82 E-value=42 Score=30.77 Aligned_cols=124 Identities=10% Similarity=-0.012 Sum_probs=72.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc-----
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----- 119 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----- 119 (235)
+.|..+.|.++-+.+-.+.|.-+-+|...--..+..|+.+ .||+..+...+..--....-...++.++..
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd-----~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD-----GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888877776666666666543 455555433322111111111223222221
Q ss_pred -ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 120 -GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 120 -~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.-+...|...-..++++.|+...+-.--+..|.+-|+ .-++-..++.+.+.+|.
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEPH 295 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCCC
Confidence 1234566666667777777777766666666666663 56666666666666554
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=81.62 E-value=8.7 Score=27.15 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+..+++.+....|++++|+..++.||.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555555555555555555555554
|
|
| >PF14929 TAF1_subA: TAF RNA Polymerase I subunit A | Back alignment and domain information |
|---|
Probab=81.24 E-value=50 Score=31.49 Aligned_cols=105 Identities=11% Similarity=0.049 Sum_probs=68.8
Q ss_pred HHHHHHhccc--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH---HHhCCCChHHhHHHHHHH
Q psy4772 112 LRGAVVNAGE--KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK---IKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 112 ~~g~il~~~~--~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a---l~~~P~n~~aw~~r~~~l 186 (235)
.++.++...+ ....=..+++.++.++|.+..........+.. . ..+...++.+ +.+. -.+..|.....++
T Consensus 347 ~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~-~---~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~ 421 (547)
T PF14929_consen 347 LRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK-D---YSAEQLLEMIALHLDLV-PSHPIWLEFVSCF 421 (547)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh-H---HHHHHHHHHHHHHhhcC-CCchHHHHHHHHH
Confidence 3556666555 45667789999999999998887766555543 1 3334444432 3444 3567888888888
Q ss_pred HH-cCCchHHHHHHHHHH---------HhCCCChHHhHHHHHHHh
Q psy4772 187 EW-MGEPDEELALTAAIL---------AQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 187 ~~-l~~~~~Al~~~~~ai---------~ldp~n~~aw~~r~~~l~ 221 (235)
.+ .++++.--+....++ .-+-.|..+|..+...+.
T Consensus 422 l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 422 LKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred HhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 77 777764444555554 123567788888888775
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=81.05 E-value=52 Score=31.34 Aligned_cols=121 Identities=15% Similarity=0.246 Sum_probs=69.5
Q ss_pred HHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 96 RDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 96 ~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.+-|+.||.+..+| +.+-.=++.. .+++....|++...-.|..+.+|---......-+ +|+.--..+.+.|..- -|
T Consensus 10 ~~rie~nP~di~sw-~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkv-Ln 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSW-SQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKV-LN 85 (656)
T ss_pred HHHHhcCCccHHHH-HHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH-hh
Confidence 45667778888888 3332222222 6777777888888888888877765443333333 3555445555544321 12
Q ss_pred hHHhHHH-HHHHHHcCCc-------hHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 176 YQVWRHR-QIIVEWMGEP-------DEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 176 ~~aw~~r-~~~l~~l~~~-------~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
...|..- ..+....+.. ..|.++.-.-+.+|+...+.|.-.+..+
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL 138 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFL 138 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 4466532 3333333332 2444555555668888888888777666
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 235 | ||||
| 1jcq_A | 382 | Crystal Structure Of Human Protein Farnesyltransfer | 2e-35 | ||
| 2f0y_A | 379 | Crystal Structure Of Human Protein Farnesyltransfer | 3e-35 | ||
| 1n95_A | 315 | Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf | 2e-34 | ||
| 2bed_A | 313 | Structure Of Fpt Bound To Inhibitor Sch207736 Lengt | 2e-34 | ||
| 1nl4_A | 312 | Crystal Structure Of Rat Farnesyl Transferase In Co | 2e-34 | ||
| 2r2l_A | 315 | Structure Of Farnesyl Protein Transferase Bound To | 2e-34 | ||
| 1o5m_A | 377 | Structure Of Fpt Bound To The Inhibitor Sch66336 Le | 2e-34 | ||
| 1qbq_A | 333 | Structure Of Rat Farnesyl Protein Transferase Compl | 3e-34 | ||
| 1o1r_A | 380 | Structure Of Fpt Bound To Ggpp Length = 380 | 3e-34 | ||
| 1ft2_A | 315 | Co-Crystal Structure Of Protein Farnesyltransferase | 4e-34 | ||
| 1ft1_A | 377 | Crystal Structure Of Protein Farnesyltransferase At | 4e-34 | ||
| 3pz4_A | 379 | Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu | 4e-34 | ||
| 3sfx_A | 349 | Cryptococcus Neoformans Protein Farnesyltransferase | 6e-22 | ||
| 3q73_A | 349 | Cryptococcus Neoformans Protein Farnesyltransferase | 4e-20 | ||
| 3dra_A | 306 | Candida Albicans Protein Geranylgeranyltransferase- | 1e-17 | ||
| 1dce_A | 567 | Crystal Structure Of Rab Geranylgeranyltransferase | 2e-11 | ||
| 1ltx_A | 567 | Structure Of Rab Escort Protein-1 In Complex With R | 2e-11 | ||
| 4ehm_A | 330 | Rabggtase In Complex With Covalently Bound Psoromic | 3e-11 | ||
| 3dss_A | 331 | Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) | 4e-11 | ||
| 3c72_A | 334 | Engineered Rabggtase In Complex With A Peptidomimet | 4e-11 | ||
| 3pz1_A | 332 | Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) | 4e-11 |
| >pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 382 | Back alignment and structure |
|
| >pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And Hydantoin Derivative Length = 379 | Back alignment and structure |
|
| >pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 315 | Back alignment and structure |
|
| >pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736 Length = 313 | Back alignment and structure |
|
| >pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 312 | Back alignment and structure |
|
| >pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93 Length = 315 | Back alignment and structure |
|
| >pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336 Length = 377 | Back alignment and structure |
|
| >pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic Acid Length = 333 | Back alignment and structure |
|
| >pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp Length = 380 | Back alignment and structure |
|
| >pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 315 | Back alignment and structure |
|
| >pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 377 | Back alignment and structure |
|
| >pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 379 | Back alignment and structure |
|
| >pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In Complex With Fpt-Ii And Tipifarnib Length = 349 | Back alignment and structure |
|
| >pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 349 | Back alignment and structure |
|
| >pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 306 | Back alignment and structure |
|
| >pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 567 | Back alignment and structure |
|
| >pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 567 | Back alignment and structure |
|
| >pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid Length = 330 | Back alignment and structure |
|
| >pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) Length = 331 | Back alignment and structure |
|
| >pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor Length = 334 | Back alignment and structure |
|
| >pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 332 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 6e-40
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYI 165
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++
Sbjct: 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL 96
Query: 166 GEKIKENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVINLL 223
++ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 97 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156
Query: 224 DDDDRGVLEY 233
L +
Sbjct: 157 AVAPAEELAF 166
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 88.7 bits (219), Expect = 2e-20
Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 21/216 (9%)
Query: 39 AIAYSQKCNLFSDE-LSYIEGLISHDVRNNSAWTQRYFVINH-----TTQFTPEVIQREI 92
A+ ++ + L ++ + + W R V+ H + + + +++ E+
Sbjct: 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAEL 93
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKS-ERALALTADAITMNPANYTVWQYRREIL 151
+ +++ PK+ W++ + E + R L L A + + N+ W YRR +
Sbjct: 94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 153
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP--------------DEELA 197
+EL + I N NY W +R ++ + +EL
Sbjct: 154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE 213
Query: 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233
L D + AW + +W++ + D +
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVH 249
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 2e-18
Identities = 18/180 (10%), Positives = 54/180 (30%), Gaps = 9/180 (5%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINH---------TTQFTPEVIQREIDYCRDK 98
++EL++ + LI+ + N S+W R ++ + V+ +E++ ++
Sbjct: 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
P ++S W Y R + A + ++ + L +
Sbjct: 219 FFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMV 278
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
+ + + + + + + + D++ +
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 2e-33
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 27/235 (11%)
Query: 1 MTDSSSDEDNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLI 60
M D D+ +V Y++R EW D+ P+PQ+DGP PVV I YS K + +
Sbjct: 51 MDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDK---------FRD--- 98
Query: 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120
+ V+ E +R RD I++ N + W++ R + +
Sbjct: 99 --------VYDYFRAVLQRD-----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 145
Query: 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180
+ + I P NY VW +RR +++ L D QEL++I + + +++KNY W+
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNYHAWQ 204
Query: 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI-NLLDDDDRGVLEYE 234
HRQ +++ D EL +L +D +N W R +VI N +DR VLE E
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 1e-15
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QRYFVI++TT + V++RE+ Y + I++
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQEL 162
P NES WNYL+G + + G + L + + P++ + + ++ L +
Sbjct: 271 PHNESAWNYLKGILQDRG--LSKYPNLLNQLLDLQPSHSSPY-LIAFLVDIYEDMLENQC 327
Query: 163 KYIGEKIKE 171
+ + +
Sbjct: 328 DNKEDILNK 336
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-12
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP 103
+ S EL +I +++ D +N AW R +VI ++ E+ Y ++
Sbjct: 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-----KLWDNELQYVDQLLKEDV 231
Query: 104 KNESPWNYLRGAVVNAGEKS-----ERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+N S WN + N + ER + T + I + P N + W Y + IL+
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 291
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204
+ L ++ + + + I E M E + A
Sbjct: 292 YPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 3e-33
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYI 165
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++
Sbjct: 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL 97
Query: 166 GEKIKENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVINLL 223
++ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 98 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 157
Query: 224 DDDDRGVLEY 233
L +
Sbjct: 158 AVAPAEELAF 167
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 1e-17
Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 21/218 (9%)
Query: 39 AIAYSQKCNLFSDE-LSYIEGLISHDVRNNSAWTQRYFVINH-----TTQFTPEVIQREI 92
A+ ++ + L ++ + + W R V+ H + + + +++ E+
Sbjct: 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAEL 94
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKS-ERALALTADAITMNPANYTVWQYRREIL 151
+ +++ PK+ W++ + E + R L L A + + N+ W YRR +
Sbjct: 95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP--------------DEELA 197
+EL + I N NY W +R ++ + +EL
Sbjct: 155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE 214
Query: 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEYET 235
L D + AW + +W++ +E T
Sbjct: 215 LVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKST 252
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 2e-15
Identities = 19/138 (13%), Positives = 51/138 (36%), Gaps = 9/138 (6%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINH---------TTQFTPEVIQREIDYCRDK 98
++EL++ + LI+ + N S+W R ++ + V+ +E++ ++
Sbjct: 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
P ++S W Y R + + E ++ + + + + + E L +
Sbjct: 220 FFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279
Query: 159 HQELKYIGEKIKENSKNY 176
++ + Y
Sbjct: 280 LLMRALDPLLYEKETLQY 297
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 2e-13
Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107
L EL ++E + + ++ W R +++ ++ RE++ C ++ +N
Sbjct: 89 LVKAELGFLESCLRVNPKSYGTWHHRCWLL---SRLPEPNWARELELCARFLEADERNFH 145
Query: 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------- 157
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 146 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 205
Query: 158 ---LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205
L +EL+ + + + W + + ++ E + +L
Sbjct: 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 4e-32
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
I + + + +Y R A+ EKSERAL LT + MNPA+YTVWQYR +L +LNK
Sbjct: 46 PIMYSEEYKDAMDYFR-AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS 104
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE--PDEELALTAAILAQDAKNYHAWQH 215
L EL+ + E +N K+YQVW HR ++++ + P E+ L D KNYH W +
Sbjct: 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY 164
Query: 216 RQWVINLLD 224
W+ +
Sbjct: 165 LHWLYSHFS 173
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 3e-14
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 2/144 (1%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHT--TQFTPEVIQREIDYCRDKIQIAPK 104
+ EL + ++ D RNNSAW R+++ + + +Q E+ Y I + P
Sbjct: 181 AQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH 240
Query: 105 NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164
N S WNYLRG + + L +
Sbjct: 241 NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300
Query: 165 IGEKIKENSKNYQVWRHRQIIVEW 188
+ ++ + ++ +
Sbjct: 301 VPLALEYLADSFIEQNRVDDAAKV 324
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 5e-30
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL-NK 156
+I + L A++ A E SERAL +T I ++YT+W YR ILK L N+
Sbjct: 25 QILYDEDYKQIMGLLL-ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNR 83
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKN 209
+L+ EL + E +N KNYQ+W +RQ+I+ + E P E + A+L+ D KN
Sbjct: 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143
Query: 210 YHAWQHRQWVINLLD-DDDRGVLEY 233
+H W +R+W+++ D +D L +
Sbjct: 144 HHVWSYRKWLVDTFDLHNDAKELSF 168
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-28
Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 35/229 (15%)
Query: 16 YKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYF 75
++ ++ D+ P+ + + I Y + + + + L+ +
Sbjct: 2 TDSKYDYSDITPVDINTEEPQICQILYDED---YKQIMGLLLALMKAE------------ 46
Query: 76 VINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS-ERALALTADAI 134
E +R + I + + W Y + N ++ L +
Sbjct: 47 ----------EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA 96
Query: 135 TMNPANYTVWQYRREILKALNK------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188
N NY +W YR+ I+ + + D ++E + + + KN+ VW +R+ +V+
Sbjct: 97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT 156
Query: 189 MGEPDE--ELALTAAILAQDAKNYHAWQHRQWVI-NLLDDDDRGVLEYE 234
++ EL+ ++ D KN AW HR +++ + ++ E
Sbjct: 157 FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 2e-15
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNES 107
+ ELS+++ +I D++NNSAW+ R+F++ T I E++Y +DKI P+N S
Sbjct: 162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221
Query: 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQE-----L 162
WNYL G + + + + T + K +
Sbjct: 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281
Query: 163 KYIGEKIKENSKNYQVWRHR 182
+ K N+ W ++
Sbjct: 282 DLLKSKYNPIRSNF--WDYQ 299
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 6e-13
Identities = 27/179 (15%), Positives = 65/179 (36%), Gaps = 16/179 (8%)
Query: 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP 108
E +E ++S D +N+ W+ R ++++ F +E+ + I KN S
Sbjct: 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDT---FDLHNDAKELSFVDKVIDTDLKNNSA 182
Query: 109 WNYLRGAVVNAGEKS-----ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELK 163
W++ + + + + L D I P N + W Y I + ++ + Q +
Sbjct: 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE 242
Query: 164 YIGEKIKENSKNYQVWRHRQIIVE-WMGEPDEELALTA-AILAQDA----KNYHAWQHR 216
+ + + + + + + + + T +L N+ W ++
Sbjct: 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF--WDYQ 299
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 16/134 (11%), Positives = 29/134 (21%), Gaps = 2/134 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P G A E +R L + A + P
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAI-ASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 335
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + L + + + + L +
Sbjct: 336 GGKQALET-VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 209 NYHAWQHRQWVINL 222
A L
Sbjct: 395 QVVAIASNGGKQAL 408
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 17/147 (11%), Positives = 33/147 (22%), Gaps = 2/147 (1%)
Query: 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147
+QR + + P A E +R L + + PA
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIAS-HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469
Query: 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207
+AL + + Q L + + + + L +
Sbjct: 470 DGGKQAL-ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 208 KNYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLC 555
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-05
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 2/136 (1%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+ + P A E +R L + A + PA +AL + +
Sbjct: 185 LNLTPAQVVAI-ASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL-ETM 242
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
+ L + + + + L + A
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGG 302
Query: 219 VINLLDDDDRGVLEYE 234
L+ R +
Sbjct: 303 GKQALETVQRLLPVLC 318
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 17/146 (11%), Positives = 33/146 (22%), Gaps = 2/146 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P G A E +R L + A + P
Sbjct: 514 QRLLPVLCQAHGLTPDQVVAIAS-NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + + L + + + + L +
Sbjct: 573 GGKQAL-ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 209 NYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLC 657
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 7e-04
Identities = 16/146 (10%), Positives = 33/146 (22%), Gaps = 2/146 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P A E +R L + A + P
Sbjct: 616 QRLLPVLCQAHGLTPAQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 674
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + + L + + + + + L +
Sbjct: 675 GGKQAL-ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 209 NYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLC 759
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 15/142 (10%), Positives = 34/142 (23%), Gaps = 3/142 (2%)
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILK 152
C+ + P+ A E +R L + A + P +
Sbjct: 264 VLCQA-HGLTPQQVVAIAS-NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321
Query: 153 ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212
AL + + + L + + + + + L + + A
Sbjct: 322 AL-ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Query: 213 WQHRQWVINLLDDDDRGVLEYE 234
L+ R +
Sbjct: 381 IASNGGGKQALETVQRLLPVLC 402
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 12/118 (10%), Positives = 29/118 (24%), Gaps = 2/118 (1%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+ + P+ A E +R L + A + P +AL + +
Sbjct: 65 LNLTPEQVVAIAS-HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL-ETV 122
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
+ L + + + + + L + + A
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 7e-04
Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 74/240 (30%)
Query: 9 DNEI-WVYYKNREEWKDL--------RPIPQDDGPTPVVAIAYSQKCNLFSDELS----- 54
D +I W+ KN + + I + + + + EL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 55 --YIEGL-ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111
Y L + +V+N AW F ++ C KI + + + ++
Sbjct: 241 KPYENCLLVLLNVQNAKAW--NAFNLS----------------C--KILLTTRFKQVTDF 280
Query: 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL-KALN---KDLHQE------ 161
L A ++ LT D + +L K L+ +DL +E
Sbjct: 281 LSAATTTHISLDHHSMTLTPD-------------EVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 162 --LKYIGEKIK------ENSKNYQVWRHRQII---VEWMGEPDEELAL--TAAILAQDAK 208
L I E I+ +N K+ + II + + EP E + ++ A
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAH 386
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 8e-04
Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 13/180 (7%)
Query: 39 AIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDK 98
Y K ++ S + S ++ WT+ N +R
Sbjct: 113 VQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ--------NERAKVCFEKA 164
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTA--DAITMNPANYTVWQYRREILKALNK 156
++ PKN + L A A+ AI +NP N + L + +
Sbjct: 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224
Query: 157 DLHQE---LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAW 213
+ +E K + E +++ V R EPD+ + L L N +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 235 | |||
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 100.0 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 100.0 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 100.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.97 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.95 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.94 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.93 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.91 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.89 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.89 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.86 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.85 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.84 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.8 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.78 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.77 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.77 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.76 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.75 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.75 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.74 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.73 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.73 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.73 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.73 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.73 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.72 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.71 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.71 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.7 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.7 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.69 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.68 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.68 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.68 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.67 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.66 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.66 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.66 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.66 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.66 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.65 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.64 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.64 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.63 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.62 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.62 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.62 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.61 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.6 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.59 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.59 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.58 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.54 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.54 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.51 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.46 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.43 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.43 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.4 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.37 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.37 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.34 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.32 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.31 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.23 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.14 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.11 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.09 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.07 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.07 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.94 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.91 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.82 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.75 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.67 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.44 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.38 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.37 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.29 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.06 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.02 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.79 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.57 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.49 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.49 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.57 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.2 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.87 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.13 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.3 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.6 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.72 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.26 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 90.81 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.09 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.98 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.16 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.51 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 85.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 82.22 |
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=285.44 Aligned_cols=208 Identities=19% Similarity=0.370 Sum_probs=189.7
Q ss_pred chhhhhccCCCCCCCCCCchhHhhhhhhhh--------------cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC
Q psy4772 18 NREEWKDLRPIPQDDGPTPVVAIAYSQKCN--------------LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF 83 (235)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~--------------~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~ 83 (235)
++++|+||+|+||++|++|+++|+|+..+. .-++|+..++++|.++|+++.+|+.||.++..+|.
T Consensus 4 ~~~~~~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~- 82 (306)
T 3dra_A 4 SKYDYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN- 82 (306)
T ss_dssp CSSCCTTCCCCCCCCSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-
T ss_pred CCCCCCCCeecCCCCCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-
Confidence 345799999999999999999999986542 12799999999999999999999999999999982
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH----hcc---cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 84 TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVV----NAG---EKSERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 84 ~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il----~~~---~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
..+++|+..+.++|.++|+++++|+ .||.++ ..+ +++++++.+++++|+++|+++.+|+||++++..++.
T Consensus 83 --~~~~eeL~~~~~~L~~nPk~y~aW~-~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~ 159 (306)
T 3dra_A 83 --RNLYDELDWCEEIALDNEKNYQIWN-YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL 159 (306)
T ss_dssp --SCHHHHHHHHHHHHHHCTTCCHHHH-HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred --ccHHHHHHHHHHHHHHCcccHHHHH-HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 1346899999999999999999996 577999 666 789999999999999999999999999999999994
Q ss_pred hHH--HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC------chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 157 DLH--QELKYIGEKIKENSKNYQVWRHRQIIVEWMGE------PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 157 ~~e--eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
++ +++++++++|++||+|++||++|++++..+++ +++|+++++++|.++|+|.++|+|+++++..+|+..+
T Consensus 160 -~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 160 -HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp -TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG
T ss_pred -cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH
Confidence 78 99999999999999999999999999999998 8999999999999999999999999999999998655
Q ss_pred cc
Q psy4772 229 GV 230 (235)
Q Consensus 229 ~~ 230 (235)
+.
T Consensus 239 ~~ 240 (306)
T 3dra_A 239 QL 240 (306)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=279.37 Aligned_cols=211 Identities=19% Similarity=0.368 Sum_probs=194.5
Q ss_pred ccccccccchhhhhccCCCCCCCCCCchhHhhhhhhhh--------------cHHHHHHHHHhHHhcCCCchhHhhhHHH
Q psy4772 10 NEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCN--------------LFSDELSYIEGLISHDVRNNSAWTQRYF 75 (235)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~--------------~~~~Al~~~~~aL~~~P~~~~a~~~~g~ 75 (235)
.+.|+-|..|++|+||+|+||++|++|+++|+|++.+. ..++|+.+++++|.++|+++.+|+.||.
T Consensus 17 ~~~~~~~~~~~~w~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~ 96 (349)
T 3q7a_A 17 TSTYIPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFS 96 (349)
T ss_dssp --CCCCTTSCGGGTTCCCCCCCCCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCccCcccCcccCCCcccCCCCCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 35688899999999999999999999999999997642 2379999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc-c-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q psy4772 76 VINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-E-KSERALALTADAITMNPANYTVWQYRREILKA 153 (235)
Q Consensus 76 ~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-~-~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~ 153 (235)
++..+|+ .+++|+.++.++|.++|+++++|+ .|+.++..+ + .+++++.+++++|+++|+++.||++|++++..
T Consensus 97 iL~~l~~----~l~eEL~~~~~~L~~nPKny~aW~-hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~ 171 (349)
T 3q7a_A 97 LLTSLNK----SLEDELRLMNEFAVQNLKSYQVWH-HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH 171 (349)
T ss_dssp HHHHTTC----CHHHHHHHHHHHHHTTCCCHHHHH-HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhh----hHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999885 245899999999999999999996 578999987 7 89999999999999999999999999999999
Q ss_pred hhHhHH--------HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC-------chHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 154 LNKDLH--------QELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 154 l~~~~e--------eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~-------~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
+++ ++ +++++++++|+++|+|++||++|++++.++++ +++|+++++++|.++|+|.++|+|+++
T Consensus 172 l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 172 FST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 995 67 99999999999999999999999999999987 689999999999999999999999999
Q ss_pred HHhhcCCc
Q psy4772 219 VINLLDDD 226 (235)
Q Consensus 219 ~l~~l~~~ 226 (235)
++...|+.
T Consensus 251 Ll~~~~~~ 258 (349)
T 3q7a_A 251 FLKHFSLP 258 (349)
T ss_dssp HHHHTTCC
T ss_pred HHHhcCCC
Confidence 99877765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=271.66 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=198.2
Q ss_pred CCCCCCcccccccccccchhhhhccCCCCCCCCCCchhHhhhhhh--------------hhcHHHHHHHHHhHHhcCCCc
Q psy4772 1 MTDSSSDEDNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQK--------------CNLFSDELSYIEGLISHDVRN 66 (235)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--------------~~~~~~Al~~~~~aL~~~P~~ 66 (235)
|.+++.+++.+.|+.|..++.|+|++|++++.+.++++.+.+.+. .|++++|+..|+++|+++|++
T Consensus 51 ~~~~~~~~~~~~~~~y~~~~~w~di~~~~~~~~~~~~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~ 130 (382)
T 2h6f_A 51 MDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 130 (382)
T ss_dssp ----CCCTTSTTCCCGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC
T ss_pred CCccccccCCccccccccCcccccCCCCCCCCCcCcchhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC
Confidence 556666668889999999999999999999999888776666643 256899999999999999999
Q ss_pred hhHhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 67 NSAWTQRYFVINHTTQ-FTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~-~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
+.+|++||.++..+|+ ++ +|+..|+++|+++|+++.+| +.+|.++..+|++++|+.+|+++|+++|+++.+|+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~-----eAl~~~~~al~l~P~~~~a~-~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLH-----EEMNYITAIIEEQPKNYQVW-HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcccCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence 9999999999999996 64 79999999999999999999 68999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCCchHH-----HHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MGEPDEE-----LALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~~~~A-----l~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+||.++..+|+ +++|+.+++++|+++|+++.+|+++|.++.. .|..++| +.+|++||.++|++.++|+++|.+
T Consensus 205 ~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~l 283 (382)
T 2h6f_A 205 HRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI 283 (382)
T ss_dssp HHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999994 9999999999999999999999999999999 5555888 599999999999999999999999
Q ss_pred HhhcCC
Q psy4772 220 INLLDD 225 (235)
Q Consensus 220 l~~l~~ 225 (235)
+...|.
T Consensus 284 l~~~g~ 289 (382)
T 2h6f_A 284 LQDRGL 289 (382)
T ss_dssp HTTTCG
T ss_pred HHccCc
Confidence 988774
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=226.01 Aligned_cols=175 Identities=19% Similarity=0.370 Sum_probs=159.1
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC-----HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc--
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT-----PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-- 122 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~-----e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-- 122 (235)
++|+.+++++|.++|+++.+|+.|+.++..+++.. ...+++++.++.++|..+|+++.+|+ .||+++..++.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~-hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH-HRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHhccCccc
Confidence 68999999999999999999999999999877521 12367999999999999999999995 58899999985
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------------
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------------- 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------------- 189 (235)
+++++.+++++|+++|+|+.||+||++++..++..+++++.+++++|+.+|.|++||++|+.++..+
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 8999999999999999999999999999999994369999999999999999999999999999888
Q ss_pred -CCchHHHHHHHHHHHhCCCChHHhHHHHHHH-hhcCC
Q psy4772 190 -GEPDEELALTAAILAQDAKNYHAWQHRQWVI-NLLDD 225 (235)
Q Consensus 190 -~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l-~~l~~ 225 (235)
+.+++|+++++++|.++|+|.++|+|+++++ ..+|.
T Consensus 206 ~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 4578999999999999999999999888888 45553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=238.62 Aligned_cols=176 Identities=19% Similarity=0.380 Sum_probs=162.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC-----HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc--c
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT-----PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE--K 122 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~-----e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~--~ 122 (235)
++|+..++++|..+|+++.+|++||.++..+|+.. ...+++|+++++++|+++|+++.+|+ .||+++..++ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~-hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH-HRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccccc
Confidence 78999999999999999999999999999988631 12367999999999999999999995 6889999999 5
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------------
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------------- 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------------- 189 (235)
+++|+++++++|+++|+++.||++|++++..++..+++|+++++++|+.+|.|++||++|+.++..+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 6999999999999999999999999999999994489999999999999999999999999999886
Q ss_pred -CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 190 -GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 190 -~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
+.+++|++++++||.++|+|.++|+|+++++..+++.
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 4578999999999999999999999999999888774
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=200.96 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=165.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---- 120 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---- 120 (235)
..|++++|+..|+++|+++|+++.+|+.+|.++..+|+++ +|+..|.++++++|+++.+| +.+|.++...
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVN-----PALENGKTLVARTPRYLGGY-MVLSEAYVALYRQA 90 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCcHHHH-HHHHHHHHHhhhhh
Confidence 3588999999999999999999999999999999999875 79999999999999999999 6899999999
Q ss_pred -------cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch
Q psy4772 121 -------EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD 193 (235)
Q Consensus 121 -------~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~ 193 (235)
|++++|+..++++++++|+++.+|..+|.++..+| ++++|+.+++++++++ .++.+|+++|.++..+|+++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG-ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999 4999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccccc
Q psy4772 194 EELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEYE 234 (235)
Q Consensus 194 ~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~~ 234 (235)
+|+..+++++.++|++..++.+++.++..+|+.++|+-.|.
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999988876654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=222.57 Aligned_cols=166 Identities=27% Similarity=0.475 Sum_probs=156.9
Q ss_pred hHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc-cHHHHHHHHHHHHc
Q psy4772 58 GLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-SERALALTADAITM 136 (235)
Q Consensus 58 ~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-~~eAl~~~~~al~l 136 (235)
.+|+++|+++.+|.++|.++...|+++ +|+..|.++|+++|+++.+| +.+|.++..+|+ +++|+.+|+++|++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~-----~Al~~~~~al~l~P~~~~a~-~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSE-----RAFKLTRDAIELNAANYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChH-----HHHHHHHHHHHhCccCHHHH-HHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 478899999999999999999999885 79999999999999999999 589999999997 99999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 137 NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+|+++.+|++||.++..+| ++++|+.+|+++|+++|+|+.+|+++|+++..+|++++|+.+++++|+++|++.++|+++
T Consensus 162 ~P~~~~a~~~~g~~~~~~g-~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 162 QPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-cCCccccc
Q psy4772 217 QWVINL-LDDDDRGV 230 (235)
Q Consensus 217 ~~~l~~-l~~~~~~~ 230 (235)
|.++.. .|...++.
T Consensus 241 g~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 241 YFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHHHTTCSCSHHH
T ss_pred HHHHHHhcCcchHHH
Confidence 999977 45435553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=212.93 Aligned_cols=154 Identities=19% Similarity=0.360 Sum_probs=139.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc--ccHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE--KSER 125 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~--~~~e 125 (235)
.|.++..++...++ .|++++ +|+..+.++|.+||+++++|+ .||.++..+| .+++
T Consensus 31 ~y~~~~~~~~a~~~------------------~~e~s~----~aL~~t~~~L~~nP~~~taWn-~R~~~L~~l~~~~~~e 87 (306)
T 3dra_A 31 DYKQIMGLLLALMK------------------AEEYSE----RALHITELGINELASHYTIWI-YRFNILKNLPNRNLYD 87 (306)
T ss_dssp HHHHHHHHHHHHHH------------------TTCCSH----HHHHHHHHHHHHCTTCHHHHH-HHHHHHHTCTTSCHHH
T ss_pred HHHHHHHHHHHHHH------------------cCCCCH----HHHHHHHHHHHHCcHHHHHHH-HHHHHHHHcccccHHH
Confidence 56666666555444 466664 799999999999999999996 6889999999 9999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHH----HHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch--HHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREIL----KAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD--EEL 196 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l----~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~--~Al 196 (235)
+|.+++++|.++|+++++|++|++++ ..+ + .+++|+.+++++++++|+|+++|+||++++..+|+++ +++
T Consensus 88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~-~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF-DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC-CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 99999999999999999999999999 666 4 5899999999999999999999999999999999998 999
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
++++++|++||+|.+||+||++++..+|+
T Consensus 167 ~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 167 SFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999999988876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-28 Score=212.81 Aligned_cols=155 Identities=19% Similarity=0.330 Sum_probs=136.6
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHHHHHHHHHHHHcCCCChHH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSERALALTADAITMNPANYTV 143 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~eAl~~~~~al~l~P~~~~a 143 (235)
+...++..++.++... +++ ++|++.+.++|.+||+++++|+ .||.++..+| .++++|.+++++|.++|+++++
T Consensus 52 ~y~~~~~~~r~~~~~~-e~s----e~AL~lt~~~L~~nP~~ytaWn-~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE-EKS----ERALELTEIIVRMNPAHYTVWQ-YRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp HHHHHHHHHHHHHHTT-CCS----HHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHhCchhHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 3334444444443333 344 3799999999999999999996 5789999999 5999999999999999999999
Q ss_pred HHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch--------HHHHHHHHHHHhCCCChHHhH
Q psy4772 144 WQYRREILKAL-NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD--------EELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 144 w~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~--------~Al~~~~~ai~ldp~n~~aw~ 214 (235)
|++|++++..+ +..+++|+.+++++|+++|+|+++|++|++++.++|+++ +|+++++++|++||+|.+||+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999 523799999999999999999999999999999999988 999999999999999999999
Q ss_pred HHHHHHhhcCC
Q psy4772 215 HRQWVINLLDD 225 (235)
Q Consensus 215 ~r~~~l~~l~~ 225 (235)
||++++..+++
T Consensus 206 ~R~~lL~~l~~ 216 (349)
T 3q7a_A 206 WRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHTTSTT
T ss_pred HHHHHHHhccc
Confidence 99999988886
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=180.11 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=153.9
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|+++|+++|+++.+|..+|.++..+|+++ +|+..+.+++..+|+++.+| ..+|.++...++++
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPN-----DAIESLKKFVVLDTTSAEAY-YILGSANFMIDEKQ 90 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCchhHHHH-HHHHHHHHHcCCHH
Confidence 3589999999999999999999999999999999999874 79999999999999999999 58999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+..+.+++.++|.+..+|..+|.++..+| ++++|+.+++++++++|.++.+|+++|.++..+|++++|+.+|++||+
T Consensus 91 ~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 91 AAIDALQRAIALNTVYADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred hCCCChH
Q psy4772 205 QDAKNYH 211 (235)
Q Consensus 205 ldp~n~~ 211 (235)
++|+++.
T Consensus 170 ~~p~~a~ 176 (184)
T 3vtx_A 170 KEEKKAK 176 (184)
T ss_dssp TTHHHHH
T ss_pred CCccCHH
Confidence 9998754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=195.90 Aligned_cols=165 Identities=21% Similarity=0.392 Sum_probs=151.8
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc-cHHHH
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-SERAL 127 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-~~eAl 127 (235)
+++++.+++.+|..+|+++.+|++|++++..+++. .++++++++.++|.++|++++||+ .+|.++...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~---~~~~EL~~~~k~l~~dprNy~AW~-~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP---NWARELELCARFLEADERNFHCWD-YRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC---CHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhCcCHHHHH
Confidence 78999999999999999999999999999998852 246899999999999999999996 58899999998 59999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHh--------------hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc----
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKAL--------------NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM---- 189 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l--------------~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l---- 189 (235)
++++++|+.+|.++.||++|+.++..+ + .+++|+++++++|..+|.|.++|+++.+++.+.
T Consensus 166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~-~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHH-HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999998 5 489999999999999999999999888888665
Q ss_pred -------CCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 190 -------GEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 190 -------~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+.+++++++++.+++++|++ .|+.++.++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~ 280 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIIL 280 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence 34789999999999999998 798888876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=209.80 Aligned_cols=145 Identities=21% Similarity=0.460 Sum_probs=134.2
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc----------cHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 77 INHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK----------SERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 77 l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~----------~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
+...|++++ +|++.+.++|.++|+++++|+ .||.++..+|+ +++|+++++++|+++|+++.||+|
T Consensus 38 ~~~~~~~~e----eal~~~~~~l~~nP~~~taW~-~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 38 KRQAGELDE----SVLELTSQILGANPDFATLWN-CRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp HHHTTCCSH----HHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCCCH----HHHHHHHHHHHHCchhHHHHH-HHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445677874 799999999999999999996 68899999988 999999999999999999999999
Q ss_pred HHHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-CchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 147 RREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 147 r~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
|++++.++++ .+++|+.+++++|+++|+|++||++|++++..+| .+++|+++++++|+.+|+|.+||+||+.++..++
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 9999999982 2799999999999999999999999999999999 8999999999999999999999999999997764
Q ss_pred Cc
Q psy4772 225 DD 226 (235)
Q Consensus 225 ~~ 226 (235)
+.
T Consensus 193 ~~ 194 (567)
T 1dce_A 193 PQ 194 (567)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=212.09 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=105.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|++||+++|+++.+|+++|.++..+|+++ +|++.|+++|+++|+++.+| +++|.++..+|++++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~-----eA~~~~~~Al~l~P~~~~a~-~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ-----EALMHYKEAIRISPTFADAY-SNMGNTLKEMQDVQG 95 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 356666666666666666666666666666666666653 56666666666666666666 456666666666666
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+++|+++|+++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|.++|.++..+|++++|.+.+++++++
T Consensus 96 A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666663 666666666666666666666666666666666666666666666666
Q ss_pred CCCC
Q psy4772 206 DAKN 209 (235)
Q Consensus 206 dp~n 209 (235)
.|+.
T Consensus 175 ~~~~ 178 (723)
T 4gyw_A 175 VADQ 178 (723)
T ss_dssp HHHH
T ss_pred ChhH
Confidence 6554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=178.04 Aligned_cols=162 Identities=13% Similarity=0.101 Sum_probs=153.8
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
|.++.+|+.+|.++...|+++ +|+..|.++++++|+++.+| +.+|.++...|++++|+..++++++++|+++.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYD-----AALTLFERALKENPQDPEAL-YWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTTSSSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 889999999999999999875 79999999999999999999 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----------hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 144 WQYRREILKAL-----------NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 144 w~~r~~~l~~l-----------~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
|+.+|.++..+ |+ +++|+..++++++++|+++.+|+.+|.++..+|++++|+..++++++++ .++.+
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 99999999999 95 9999999999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHhhcCCcccccccc
Q psy4772 213 WQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 213 w~~r~~~l~~l~~~~~~~~~~ 233 (235)
|.++|.++..+|+.++++-.|
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998876544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=169.38 Aligned_cols=163 Identities=10% Similarity=0.075 Sum_probs=154.5
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
++++++|+++|.++..+|+++ +|+..|+++|+++|+++.+| +.+|.++...|++++|+..+.+++..+|++..+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 75 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFD-----GAIRAYKKVLKADPNNVETL-LKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence 467899999999999999875 79999999999999999999 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+..+|.++...+ +++.++..++++++++|.+..+|..+|.++..+|++++|++.|+++++++|.++.+|+++|.++..+
T Consensus 76 ~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 76 YYILGSANFMID-EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccc
Q psy4772 224 DDDDRGVLEY 233 (235)
Q Consensus 224 ~~~~~~~~~~ 233 (235)
|+..+|.-.|
T Consensus 155 g~~~~A~~~~ 164 (184)
T 3vtx_A 155 GLRDEAVKYF 164 (184)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9988876544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=176.66 Aligned_cols=171 Identities=8% Similarity=0.074 Sum_probs=161.6
Q ss_pred hhcHHHHHHHHHhHHhcCC-CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 46 CNLFSDELSYIEGLISHDV-RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P-~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
.|++++|+..|+++|+++| .+..+++++|.++..+|+++ +|+..|.+++.++|+++.+| +.+|.++..+|+++
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYK-----EAADYFDIAIKKNYNLANAY-IGKSAAYRDMKNNQ 93 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTTCSHHHHH-HHHHHHHHHTTCHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHH-----HHHHHHHHHHHhCcchHHHH-HHHHHHHHHcccHH
Confidence 5899999999999999999 99999999999999999875 79999999999999999999 68999999999999
Q ss_pred HHHHHHHHHHHcCCCCh-------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCCc---
Q psy4772 125 RALALTADAITMNPANY-------TVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGEP--- 192 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~-------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~~--- 192 (235)
+|+..++++++++|++. .+|..+|.++..+| ++++|+.+++++++++|+ +..+|+++|.++...|+.
T Consensus 94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 67999999999999 599999999999999999 999999999999998887
Q ss_pred ------------------------hHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 193 ------------------------DEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 193 ------------------------~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
++|+.+++++++++|++..+...++.+...+
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998888876544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=207.16 Aligned_cols=163 Identities=13% Similarity=0.100 Sum_probs=155.8
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
-.|+++++|+++|.++..+|+++ +|+..|+++|+++|+++.+| +++|.++..+|++++|+.+|+++|+++|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~-----eAi~~~~kAl~l~P~~~~a~-~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIE-----EAVRLYRKALEVFPEFAAAH-SNLASVLQQQGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 47999999999999999999875 79999999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
.+|+++|.++..+| ++++|+.+|+++++++|++..+|+++|.++..+|++++|+.+|++|++++|++..+|.++|.++.
T Consensus 78 ~a~~nLg~~l~~~g-~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQ-DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 99999999999999 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccc
Q psy4772 222 LLDDDDRGVL 231 (235)
Q Consensus 222 ~l~~~~~~~~ 231 (235)
.+|+..+++-
T Consensus 157 ~~g~~~~A~~ 166 (723)
T 4gyw_A 157 IVCDWTDYDE 166 (723)
T ss_dssp HTTCCTTHHH
T ss_pred hcccHHHHHH
Confidence 9999877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=181.25 Aligned_cols=181 Identities=10% Similarity=0.082 Sum_probs=153.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+.+|+++++.+|+++.+|+.+|.++..+|+++ +|+..|.+++.++|++..+| +.+|.++...|+++
T Consensus 77 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ-----AAIVALQRCLELQPNNLKAL-MALAVSYTNTSHQQ 150 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHccccHH
Confidence 3578999999999999999999999999999999999874 68888888888888888888 46777777777766
Q ss_pred HHHHHHHHHHHcC--------------------------------------------CC--ChHHHHHHHHHHHHhhHhH
Q psy4772 125 RALALTADAITMN--------------------------------------------PA--NYTVWQYRREILKALNKDL 158 (235)
Q Consensus 125 eAl~~~~~al~l~--------------------------------------------P~--~~~aw~~r~~~l~~l~~~~ 158 (235)
+|+..++++++++ |. ++.+|+.+|.++..+| ++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~ 229 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-EF 229 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-CH
Confidence 6666666665554 55 7888888999999988 48
Q ss_pred HHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 159 eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++|+.+++++++++|.++.+|+.+|.++...|++++|+..+++++.++|++..+|.++|.++..+|+..+|.-.
T Consensus 230 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=195.81 Aligned_cols=178 Identities=12% Similarity=0.049 Sum_probs=169.5
Q ss_pred hhcH-HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----
Q psy4772 46 CNLF-SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---- 120 (235)
Q Consensus 46 ~~~~-~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---- 120 (235)
.+++ ++|+.+|+++|+++|+++.+|+.+|.++..+|+++ +|+..|.++++++|+ +.+| +.+|.++...
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~-~~~~-~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVT-----SAHTCFSGALTHCKN-KVSL-QNLSMVLRQLQTDS 187 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHTTCCC-HHHH-HHHHHHHTTCCCSC
T ss_pred ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCC-HHHH-HHHHHHHHHhccCC
Confidence 5789 99999999999999999999999999999999875 799999999999999 6888 6899999999
Q ss_pred -----cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh--------hHhHHHHHHHHHHHHHhCC---CChHHhHHHHH
Q psy4772 121 -----EKSERALALTADAITMNPANYTVWQYRREILKAL--------NKDLHQELKYIGEKIKENS---KNYQVWRHRQI 184 (235)
Q Consensus 121 -----~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l--------~~~~eeal~~~~~al~~~P---~n~~aw~~r~~ 184 (235)
|++++|+..++++++++|++..+|+.+|.++..+ |+ +++|+.+++++++++| .++.+|+++|.
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 9999999999999999999999999999999999 95 9999999999999999 99999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++..+|++++|+..+++++.++|++..+|..++.++..+|+..++.-
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887766653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=183.04 Aligned_cols=178 Identities=10% Similarity=0.030 Sum_probs=121.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++++|+++.+|.++|.++...|+++ +|+..|.++++++|+++.+| ..+|.++...|++++
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME-----GAVQAYVSALQYNPDLYCVR-SDLGNLLKALGRLEE 153 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS-----HHHHHHHHHHHHCTTCTHHH-HHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCcHHHH-HHHHHHHHHccCHHH
Confidence 467888888888888888888888888888888888876 46666666666666666666 356666666666666
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|+++++++|++..+|+.+|.++...| ++++|+..++++++++|.+..+|..+|.++...|++++|+..+++++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666666666666666666666666 3666666666666666666666666666666666666666666666666
Q ss_pred CCCChHHhHHHHHHHhhcCCccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+|++..+|.++|.++...|+.+++.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665555554443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=182.46 Aligned_cols=177 Identities=12% Similarity=0.043 Sum_probs=109.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..|+++++++|+++.+|..+|.++...|+++ +|+..|.+++.++|+++.+| +.+|.++...|++++|
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD-----RAVAAYLRALSLSPNHAVVH-GNLACVYYEQGLIDLA 256 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCcCCHHHH-HHHHHHHHHcCCHHHH
Confidence 45555555566666666666666666666665555554 45666666666666666666 3566666666666666
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+..++++++++|.++.+|+.++.++...| ++++|+.+++++++++|.+..+|+.++.++...|++++|+..++++++++
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666 36666666666666666666666666666666666666666666666666
Q ss_pred CCChHHhHHHHHHHhhcCCccccc
Q psy4772 207 AKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|.+..+|.+++.++...|+..++.
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666666555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=169.15 Aligned_cols=179 Identities=13% Similarity=0.182 Sum_probs=150.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|+++++.+|.++.+|..+|.++...|+++ +|+..+.+++.++|.+..+| +.+|.++...|++++
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELE-----RALAFYDKALELDSSAATAY-YGAGNVYVVKEMYKE 109 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCcchHHH-HHHHHHHHHhccHHH
Confidence 477888888899999888988889999998888888764 78888888888888888888 578888888888889
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++.++|.+..+|..++.++..+| ++++|+..++++++.+|.+..+|..+|.++...|++++|+..+++++..
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLE-QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988888888888888888888888 4888888898888888888888888888888888888898888888888
Q ss_pred CCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+|.+..+|..++.++..+|+..++.-
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHH
Confidence 88888888888888888888776653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=202.98 Aligned_cols=174 Identities=5% Similarity=-0.136 Sum_probs=163.2
Q ss_pred hhhhcHHHHHHHHHhHH--------hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy4772 44 QKCNLFSDELSYIEGLI--------SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGA 115 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL--------~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~ 115 (235)
...+++++|++.+++++ +.+|+++.+|+.+|.++..+|+++ +|+..|+++++++|+++.+| +.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVA-----KATRKLDDLAERVGWRWRLV-WYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHCCCHHHH-HHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHH-----HHHHHHHHHhccCcchHHHH-HHHHH
Confidence 44688999999999999 999999999999999999999875 79999999999999999999 68999
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHH
Q psy4772 116 VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE 195 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~A 195 (235)
++...|++++|+..|+++++++|+++.+|+++|.++..+|+ +++ +.+|+++++++|.+..+|+++|.++..+|++++|
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999995 899 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
+..|++|++++|.+..+|.+++.++...+.
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999865443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=168.98 Aligned_cols=179 Identities=10% Similarity=0.097 Sum_probs=164.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC-------CchhhHHHHHHHh
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN-------ESPWNYLRGAVVN 118 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~-------~~aw~~~~g~il~ 118 (235)
.|++++|+.+|+++++.+ .++.+|..+|.++..+|+++ +|+..+.+++.++|.+ +.+| +.+|.++.
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~ 90 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYE-----TAISTLNDAVEQGREMRADYKVISKSF-ARIGNAYH 90 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHhCcccccchHHHHHHH-HHHHHHHH
Confidence 478999999999999999 99999999999999999874 7999999999999988 5788 57999999
Q ss_pred cccccHHHHHHHHHHHH--------------------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 119 AGEKSERALALTADAIT--------------------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~--------------------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..|++++|+..+++++. .+|.+..+|..+|.++...| ++++|+.+++++++.+
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcC
Confidence 99999999999999999 78888999999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|.++.+|+.+|.++...|++++|+..+++++.++|++..+|..+|.++..+|+..++.-.
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-23 Score=177.19 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=168.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH---------------------------------------H
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------------E 86 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------------~ 86 (235)
.|++++|+..|+++++++|+++.+|..+|.++..+|++++ +
T Consensus 112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence 4789999999999999999999999999999999998643 2
Q ss_pred HHHHHHHHHHHHHHhCCC--CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPK--NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
.+++|+..|.+++.++|. ++.+| +.+|.++...|++++|+.+++++++++|+++.+|+.+|.++..+| ++++|+.+
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~ 269 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQ-TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD-RSEEAVEA 269 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 467888889999999999 88899 589999999999999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC------------ChHHhHHHHHHHhhcCCcccc
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK------------NYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~------------n~~aw~~r~~~l~~l~~~~~~ 229 (235)
++++++++|.+..+|+++|.++..+|++++|+..+++++.++|+ +..+|.+++.++..+|+.+.+
T Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999998 478999999999999987543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=170.14 Aligned_cols=172 Identities=8% Similarity=0.105 Sum_probs=160.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch----hhHHHHHHHhccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP----WNYLRGAVVNAGE 121 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a----w~~~~g~il~~~~ 121 (235)
.|++++|+..|+++++.+|+++.+|..+|.++..+|+++ +|+..+.+++. .|.++.. | +.+|.++...|
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~-~~~~~~~~~~~~-~~lg~~~~~~~ 88 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYD-----LAQKDIETYFS-KVNATKAKSADF-EYYGKILMKKG 88 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHH-----HHHHHHHHHHT-TSCTTTCCHHHH-HHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHh-ccCchhHHHHHH-HHHHHHHHHcc
Confidence 588999999999999999999999999999999999875 79999999999 6666555 7 57999999999
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++++|+..++++++++|.+..+|..+|.++..+| ++++|+.+++++++++|.+..+|+++|......+++++|+..+++
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 599999999999999999999999999555566699999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
++.++|.+..+|..+|.++..+|+
T Consensus 168 a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 168 VLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCccchHHHHHHHHHHHHcCc
Confidence 999999999999999999988887
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=174.62 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCC--CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPK--NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 90 ~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+|+..|.+++.++|. ++.+| +.+|.++...|++++|+..+++++.++|+++.+|+.+|.++..+| ++++|+.++++
T Consensus 199 ~A~~~~~~a~~~~p~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 276 (368)
T 1fch_A 199 EVKELFLAAVRLDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN-QSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHSTTSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 344444444444444 34444 345556666666666666666666666666666666666666666 36666666666
Q ss_pred HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC-----------hHHhHHHHHHHhhcCCcccc
Q psy4772 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN-----------YHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 168 al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n-----------~~aw~~r~~~l~~l~~~~~~ 229 (235)
+++++|.+..+|+.+|.++..+|++++|+..+++++.++|++ ..+|.+++.++..+|+.+++
T Consensus 277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 666666666666666666666666666666666666666665 56666666666666655544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=170.78 Aligned_cols=180 Identities=9% Similarity=-0.029 Sum_probs=171.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSE 124 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~ 124 (235)
.|++++|+..|+++++.+|.+..++..++.++...|+++ +|+..+.++++.+|.++.+| +.+|.++...| +++
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN-----ELFYLSHKLVDLYPSNPVSW-FAVGCYYLMVGHKNE 108 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTSTHHH-HHHHHHHHHSCSCHH
T ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHH-----HHHHHHHHHHHhCcCCHHHH-HHHHHHHHHhhhhHH
Confidence 489999999999999999999999999999999999864 79999999999999999999 68999999999 999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+.++++++.++|.+..+|..+|.++..+| ++++|+.+++++++.+|.+..+|..+|.++...|++++|+..+++++.
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 205 QDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++|.+..+|..+|.++...|+..++.-.
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999988776543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-24 Score=164.67 Aligned_cols=139 Identities=5% Similarity=0.021 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
+.+++|+..+.+++..+|+++.+| +.+|.++...|++++|+.+++++|+++|+++.+|+.+|.++..+| ++++|+.+|
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~-~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-~~~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKG-FYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE-NTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-chHHHHHHH
Confidence 345678888888888888888887 678888888888888888888888888888888888888888888 478888888
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHH-HHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELAL-TAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~-~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
+++++++|+++.+|+.+|.++...|++++|... +++|++++|+|+.+|..++.++...|++
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 888888888888888888888888887766654 5788888888888888888887777754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=171.71 Aligned_cols=181 Identities=11% Similarity=0.120 Sum_probs=151.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|+++++.+|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|+++
T Consensus 76 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~-~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL-----LAISALRRCLELKPDNQTAL-MALAVSFTNESLQR 149 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCHH
Confidence 3578999999999999999999999999999999999874 68888888888888888888 57888887777777
Q ss_pred HHHHHHHHHHHc-------------------------------------------------CCC--ChHHHHHHHHHHHH
Q psy4772 125 RALALTADAITM-------------------------------------------------NPA--NYTVWQYRREILKA 153 (235)
Q Consensus 125 eAl~~~~~al~l-------------------------------------------------~P~--~~~aw~~r~~~l~~ 153 (235)
+|+..+++++.+ +|. ++.+|..+|.++..
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 666666665555 455 67778888888888
Q ss_pred hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 154 LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 154 l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
.| ++++|+.+++++++++|.++.+|+.+|.++...|++++|+..+++++.++|.+..+|..+|.++..+|+..+|.-.
T Consensus 230 ~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 230 SG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp TT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88 4888899999988888888888888888888888899999999999988898888888888888888887666543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=171.17 Aligned_cols=175 Identities=10% Similarity=0.090 Sum_probs=92.4
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
++++|+.+++++++.+|.++.+|..+|.++...|++ ++|+..+.++++++|.+..+| +.+|.++...|++++|+
T Consensus 106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----~~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH-----DQAMAAYFTAAQLMKGCHLPM-LYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHTTTCSHHH-HHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHhccccHHHH-HHHHHHHHHHhhHHHHH
Confidence 445555555555555555555555555555554443 245555555555555555555 34555555555555555
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC---------CCChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN---------SKNYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~---------P~n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
..+++++.++|.++.+|+.+|.++..+| ++++|+.+++++++.. |.+..+|..+|.++...|++++|+..
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNG-EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555555555555555555555555 2555555555555544 44445555555555555555555555
Q ss_pred HHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+++++.++|++..+|..+|.++..+|+..+|
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 5555555555555555555555555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=171.52 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=164.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|+++.+|+.+|.++..+|+++ +|+..+.+++.++|.+..+| +.+|.++...|++++
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK-----AALPDLTKVIALKMDFTAAR-LQRGHLLLKQGKLDE 89 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHhCCCcchHH-HHHHHHHHHcCChHH
Confidence 478999999999999999999999999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCC---CChHHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 126 ALALTADAITMNP---ANYTVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 126 Al~~~~~al~l~P---~~~~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|+..+++++.++| ++..++..+ +.++...| ++++|+.+++++++.+|.++.+|..+|.++...|
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence 9999999999999 999999887 68888888 5999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++++|+..+++++.++|.+..+|..+|.++..+|+..++.-
T Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999988888766643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=158.74 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=166.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc-cccH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-EKSE 124 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-~~~~ 124 (235)
.|++++|+..++++++.+|+++.+|..+|.++...|+++ +|+..+.+++.++|.+..+| +.+|.++... |+++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND-----KAQESFRQALSIKPDSAEIN-NNYGWFLCGRLNRPA 94 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHTTTCCHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHHhcCcHH
Confidence 588999999999999999999999999999999999874 79999999999999999999 6899999999 9999
Q ss_pred HHHHHHHHHHH--cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 125 RALALTADAIT--MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 125 eAl~~~~~al~--l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+|+..+++++. .+|.+..+|+.+|.++..+| ++++|+.+++++++.+|.+..+|..++.++...|++++|+..++++
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQG-QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999 77888999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHhCC-CChHHhHHHHHHHhhcCCccccc
Q psy4772 203 LAQDA-KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 203 i~ldp-~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+.++| .+..+|...+.+....|+..++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 174 QSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 99999 99999987777777777765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=161.09 Aligned_cols=171 Identities=12% Similarity=0.144 Sum_probs=160.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.+..++..+|.++..+|+++ +|+..+.++++++|.++.+| +.+|.++...|++++
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK-----EAKDMFEKALRAGMENGDLF-YMLGTVLVKLEQPKL 143 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHTCCSHHHH-HHHHHHHHHTSCHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhccHHH
Confidence 588999999999999999999999999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++.++|++..+|..+|.++...| ++++|+..++++++.+|.+..+|..+|.++...|++++|+.++++++.+
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANEG-MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhc
Q psy4772 206 DAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l 223 (235)
+|++..++..++.+....
T Consensus 223 ~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp CTTCHHHHHHHTC-----
T ss_pred CcchHHHHHHHHHHHhhc
Confidence 999999999887765443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=183.91 Aligned_cols=179 Identities=12% Similarity=0.090 Sum_probs=170.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC-CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~-~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
..+++++..++.++...|.++.+|+.+|.++...|++ + +|+..|.++++++|.++.+| +.+|.++...|++++
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP-----EAEVLLSKAVKLEPELVEAW-NQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHH-----HHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 4578999999999999999999999999999999998 5 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHh---------hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKAL---------NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------- 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l---------~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------- 189 (235)
|+.+|+++++++|+ ..+|..+|.++..+ |+ +++|+.+++++++++|++..+|+.+|.++..+
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999 79999999999999 95 99999999999999999999999999999999
Q ss_pred -CCchHHHHHHHHHHHhCC---CChHHhHHHHHHHhhcCCcccccccc
Q psy4772 190 -GEPDEELALTAAILAQDA---KNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 190 -~~~~~Al~~~~~ai~ldp---~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
|++++|+.+|++|+.++| .++.+|+++|.++..+|+..+|.-.|
T Consensus 234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999 99999999999999999987776443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=165.49 Aligned_cols=157 Identities=10% Similarity=0.029 Sum_probs=147.8
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC-CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP-KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p-~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.|.++.+|+++|.++...|+++ +|+..|.+++.++| .+..+| +.+|.++...|++++|+..++++++++|++.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYA-----VAFEKYSEYLKLTNNQDSVTA-YNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHTTTCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred cccCHHHHHHHHHHHHHccCHH-----HHHHHHHHHHhccCCCCcHHH-HHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 4567799999999999999875 79999999999999 899999 6799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC--ChHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-------QVWRHRQIIVEWMGEPDEELALTAAILAQDAK--NYHA 212 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~--n~~a 212 (235)
.+|..+|.++..+| ++++|+.+++++++++|++. .+|+.+|.++...|++++|++.++++++++|+ +..+
T Consensus 77 ~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMK-NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 99999999999999 59999999999999999999 77999999999999999999999999999999 9999
Q ss_pred hHHHHHHHhhcCCc
Q psy4772 213 WQHRQWVINLLDDD 226 (235)
Q Consensus 213 w~~r~~~l~~l~~~ 226 (235)
|.++|.++..+|..
T Consensus 156 ~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 156 LYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999766665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=157.41 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=131.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+++++|++.+.+++..+|+++.+++.+|.++..+|+|+ +|+..|+++|+++|+++.+| +.+|.++...|++++
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYD-----LAKKYICTYINVQERDPKAH-RFLGLLYELEENTDK 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCchHH
Confidence 578899999999999999999999999999999999875 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH-HHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY-IGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~-~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
|+.+|+++++++|+++.+|+++|.++..+|+ ++++... ++++++++|+|+.+|..++.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999995 7776664 699999999999999999999988875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=151.88 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=89.6
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
++..+||+...+| ..+|.++...|++++|+.+|+++|+++|.++.+|+++|.++..+| ++++|+.+++++|+++|+++
T Consensus 4 r~a~inP~~a~~~-~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEE-KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM-EFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc-cHHHHHHHHHHHHHhhhhhh
Confidence 3445677777777 467777777777777777777777777777777777777777777 37777777777777777777
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.+|+++|.++..+|++++|++.|+++++++|+|..++..++.++
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-22 Score=161.56 Aligned_cols=179 Identities=11% Similarity=0.035 Sum_probs=170.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.+|..+|.++...|+++ +|+..+.+++.++|.+..+| +.+|.++...|++++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK-----LADEEYRKALASDSRNARVL-NNYGGFLYEQKRYEE 123 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCcCcHHHH-HHHHHHHHHHhHHHH
Confidence 478999999999999999999999999999999999874 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHH--cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAIT--MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~--l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|+..+++++. .+|.+..+|..++.++..+| ++++|+.+++++++.+|.+..+|..++.++...|++++|+..+++++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMK-KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 89999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
..+|.+..+|..++.++..+|+..++.-
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 203 QGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp TTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999988888776643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=164.35 Aligned_cols=178 Identities=10% Similarity=0.053 Sum_probs=134.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHH-------------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLR------------- 113 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~------------- 113 (235)
|++++|+.+++++++.+|.++.+|..+|.++...|++ ++|+..+.+++..+|.+...+ ..+
T Consensus 69 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 69 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-----NAALASLRAWLLSQPQYEQLG-SVNLQADVDIDDLNVQ 142 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHTSTTTTTC------------------
T ss_pred CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHhCCccHHHH-HHHhHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555544 356666666666666666666 233
Q ss_pred -HH-HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 114 -GA-VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 114 -g~-il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
|. ++...|++++|+..++++++.+|.+..++..+|.++..+| ++++|+.+++++++.+|.++.+|..+|.++...|+
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN-NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 44 4666677777888888888888888899999999999998 48999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+++|+..+++++.++|.+..+|..++.++..+|+..+|.-
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999988888776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=162.59 Aligned_cols=165 Identities=7% Similarity=0.031 Sum_probs=143.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhh----------------HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQ----------------RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~----------------~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw 109 (235)
.|++++|+..|+++++++|+++.+|+. +|.++..+|+++ +|+..|.++++++|+++.+|
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~ 91 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD-----KAYLFYKELLQKAPNNVDCL 91 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHCCCCHHHH
Confidence 588999999999999999999999999 999999999875 79999999999999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++...++ ....+...+++++...|. ..+|+++|.++..
T Consensus 92 -~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~ 169 (208)
T 3urz_A 92 -EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLF 169 (208)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999987753 246677788888754443 3478999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 189 MGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 189 l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
+|++++|+.+|++|+.++|+.. +...+..
T Consensus 170 ~~~~~~A~~~~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 170 TTRYEKARNSLQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp HHTHHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 9999999999999999999754 3344433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=171.96 Aligned_cols=180 Identities=15% Similarity=0.099 Sum_probs=168.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|+++.+|+.+|.++...|+++ +|+..|.++++++|.+..+| +.+|.++...|++++
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK-----AALPDLTKVIQLKMDFTAAR-LQRGHLLLKQGKLDE 112 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCCcHHHH-HHHHHHHHHcCCHHH
Confidence 489999999999999999999999999999999999874 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcCCCCh---HHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 126 ALALTADAITMNPANY---TVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 126 Al~~~~~al~l~P~~~---~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|+..++++++++|.+. .+|... +.++...| ++++|+.+++++++.+|.+..+|+.+|.++...|
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 9999999999999999 887665 66688888 5999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++++|+..+++++.++|.+..+|..+|.++...|+..++.-.
T Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999988776543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=165.54 Aligned_cols=179 Identities=7% Similarity=0.043 Sum_probs=128.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhh-------cCCCC--HHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhc
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINH-------TTQFT--PEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~-------~~~~~--e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~ 119 (235)
++|+..|+++|..+|.++.+|+++|.++.. .|++. ...+++|+..|+++++ ++|++..+| ..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~-~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY-FAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHH-HHHHHHHHh
Confidence 577777777777788888888777777653 35541 1123467777777777 677777777 467777777
Q ss_pred ccccHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCCchHHHH
Q psy4772 120 GEKSERALALTADAITMNPANYT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MGEPDEELA 197 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~~~~Al~ 197 (235)
.|++++|...|+++++++|.++. +|...+.++.+.| .+++|+..|+++++.+|.+..+|...+.+... .|++++|+.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777788888888877777776 7777777777777 47777777777777777777777766555433 677777777
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.|++++.++|+++.+|..++.++..+|+..++.
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 777777777777777777777776666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=163.17 Aligned_cols=178 Identities=10% Similarity=0.090 Sum_probs=128.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.+|..+|.++...|+++ +|+..+.+++.++|.++.+| +.+|.++...|++++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR-----KAISDLKAASKLKSDNTEAF-YKISTLYYQLGDHEL 206 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTTCSCCHHHH-HHHHHHHHHHTCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 467777777777777777777777777777777777654 57777777777777777777 467777777777777
Q ss_pred HHHHHHHHHHcCCCChHHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCChH----HhHHHHHHHHHc
Q psy4772 126 ALALTADAITMNPANYTVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNYQ----VWRHRQIIVEWM 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~~----aw~~r~~~l~~l 189 (235)
|+..++++++++|++..+|... +.++...| ++++|+..++++++.+|.+.. ++..+|.++...
T Consensus 207 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 7777777777777777766533 55566666 377777777777777777663 345567777777
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|++++|+..+++++.++|+++.+|..+|.++..+|+..+|.
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777777777777777777777665554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=160.41 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=155.2
Q ss_pred hhhcHHHHHHHHHhHHhcCCCc-------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-----------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRN-------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ----------------- 100 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~-------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~----------------- 100 (235)
..|++++|+..++++++++|++ +.+|..+|.++..+|+++ +|+..+.+++.
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~~a 124 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK-----KTIEYYQKSLTEHRTADILTKLRNAEKE 124 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 3589999999999999999988 799999999999999875 45566666665
Q ss_pred ---------hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 101 ---------IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 101 ---------l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.+|.++.+| +.+|.++...|++++|+..+++++.++|.++.+|..+|.++..+| ++++|+.+++++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEA-RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 888888999 689999999999999999999999999999999999999999999 599999999999999
Q ss_pred CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHH
Q psy4772 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVI 220 (235)
Q Consensus 172 ~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l 220 (235)
+|.++.+|..+|.++..+|++++|+..+++++.++ |.+..++..++.++
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 99998888776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=160.58 Aligned_cols=174 Identities=8% Similarity=-0.058 Sum_probs=155.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~ 119 (235)
.|+|++|+..|+++|+.+|.+ +.+++.+|.++..+|+++ +|+..|.++++++|+++ .++ +.+|.++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~-----~A~~~~~~~l~~~p~~~~~~~a~-~~lg~~~~~ 101 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYL-----LAASEYERFIQIYQIDPRVPQAE-YERAMCYYK 101 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCTTHHHHH-HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHCCCCchhHHHH-HHHHHHHHH
Confidence 489999999999999999999 999999999999999875 79999999999999765 477 689999999
Q ss_pred --------ccccHHHHHHHHHHHHcCCCChHHH-----------------HHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 120 --------GEKSERALALTADAITMNPANYTVW-----------------QYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 120 --------~~~~~eAl~~~~~al~l~P~~~~aw-----------------~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.|++++|+..++++++++|++..++ +.+|.++..+| ++++|+..++++++.+|+
T Consensus 102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT
T ss_pred hcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998888 88899999999 599999999999999999
Q ss_pred ---ChHHhHHHHHHHHHc----------CCchHHHHHHHHHHHhCCCChHH---hHHHHHHHhhcCCc
Q psy4772 175 ---NYQVWRHRQIIVEWM----------GEPDEELALTAAILAQDAKNYHA---WQHRQWVINLLDDD 226 (235)
Q Consensus 175 ---n~~aw~~r~~~l~~l----------~~~~~Al~~~~~ai~ldp~n~~a---w~~r~~~l~~l~~~ 226 (235)
...+++.+|.++..+ |++++|+..+++++..+|+++.+ ...++.+...+++.
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 456999999999987 88999999999999999999654 44455555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=149.15 Aligned_cols=122 Identities=10% Similarity=0.073 Sum_probs=114.2
Q ss_pred hHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcC
Q psy4772 58 GLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMN 137 (235)
Q Consensus 58 ~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~ 137 (235)
++..+||+.+++|.++|.+++..|+|+ +|+..|+++|+++|.++.+| +.+|.++..+|++++|+..++++|+++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~ 77 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYP-----TAMRHYNEAVKRDPENAILY-SNRAACLTKLMEFQRALDDCDTCIRLD 77 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence 456689999999999999999999875 79999999999999999999 689999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 138 PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 138 P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
|+++.+|+++|.++..+| ++++|+.+|+++++++|+|..++..++.++
T Consensus 78 p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMR-EWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999 599999999999999999999999988764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=163.93 Aligned_cols=180 Identities=10% Similarity=0.064 Sum_probs=164.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+.+|+++++.+|+++.+|..+|.++...|+++ +|+..+.++++++|.+..+| +.+|.++...|+++
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDG-----LAIIALNHARMLDPKDIAVH-AALAVSHTNEHNAN 106 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCcCCHHHH-HHHHHHHHHcCCHH
Confidence 3588999999999999999999999999999999999874 79999999999999999999 68999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHH--------------HH-HHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 125 RALALTADAITMNPANYTVWQYR--------------RE-ILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r--------------~~-~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+|+..+++++..+|.+..++..+ +. ++...| ++++|+.+++++++.+|.+..+|..+|.++...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN-EYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHH-HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999888 66 677788 499999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
|++++|+..+++++.++|.+..+|..+|.++...|+..++.-
T Consensus 186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999998877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=169.19 Aligned_cols=179 Identities=9% Similarity=0.085 Sum_probs=143.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|.++.++..+|.++...|+++ +|+..|.++++++|.++.+| +.+|.++...|++++
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR-----KAISDLKAASKLKNDNTEAF-YKISTLYYQLGDHEL 229 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGG-----GGHHHHHHHHHHHCSCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 467888888899888888888888888888888888875 57788888888888888888 467888888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHHHc
Q psy4772 126 ALALTADAITMNPANYTVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVEWM 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~~l 189 (235)
|+..+++++.++|++..++... +.++...| ++++|+.+++++++++|.++ .+|..+|.++.+.
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 8888888888888888777665 77777777 47888888888888888774 3677778888888
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
|++++|+..+++++.++|++..+|..+|.++..+|+..+|.-
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888888888888888888888888888877777766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=149.16 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=153.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.++..+|.++...|+++ +|+..+.++++++|.+..+| +.+|.++...|++++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD-----RGTELLERSLADAPDNVKVA-TVLGLTYVQVQKYDL 94 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhcCHHH
Confidence 478999999999999999999999999999999999874 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++..+|.+..+|..+|.++..+| ++++|+.+++++++.+|.++.+|..+|.++...|++++|+.++++++.+
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred CCCChHH
Q psy4772 206 DAKNYHA 212 (235)
Q Consensus 206 dp~n~~a 212 (235)
+|++...
T Consensus 174 ~~~~~~~ 180 (186)
T 3as5_A 174 DEGASVE 180 (186)
T ss_dssp HHCCCGG
T ss_pred CCCchhh
Confidence 9998754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=161.85 Aligned_cols=172 Identities=7% Similarity=-0.075 Sum_probs=151.8
Q ss_pred hhcHHHHHHHHHhHHhc--CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISH--DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.+++++|++.++++++. +|+++.+++.+|.++...|+++ +|+..+.+ |.+..++ ..+|.++..+|++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~-----~Al~~l~~-----~~~~~~~-~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPD-----AALRTLHQ-----GDSLECM-AMTVQILLKLDRL 146 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHH-----HHHHHHTT-----CCSHHHH-HHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHhC-----CCCHHHH-HHHHHHHHHCCCH
Confidence 46789999999999986 6999999999999999999875 78888887 8999999 5799999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHH--HhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILK--ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~--~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|+..++++++++|++.......+++.. ..| ++++|+.+++++++.+|.++.+|+.+|.++..+|++++|+..+++
T Consensus 147 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~-~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGE-KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998755444443332 336 489999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
++.++|+++.+|.++|.++..+|+..++
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999988654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=169.39 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=162.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhH-------hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSA-------WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a-------~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~ 119 (235)
+++++|+..|+++++.+|+++.+ +..+|.++...|++ ++|+..|.+++.++|. +.+| +.+|.++..
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~A~~~~~~~~~~~~~-~~~~-~~l~~~~~~ 288 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL-----LDAQVLLQESINLHPT-PNSY-IFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHCCC-HHHH-HHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHhcCCC-chHH-HHHHHHHHH
Confidence 58899999999999999999764 66666677777665 4899999999999999 8899 589999999
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.|++++|+..+++++.++|+++.+|..+|.++..+| ++++|+..++++++.+|.+..+|..+|.++...|++++|+..+
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++++.++|++..+|.++|.++..+|+..++.-.
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999988776543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=177.03 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=140.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..++++++.+|+++.+|+.+|.++..+|+++ +|+..|+++++++|+++.+| +.+|.++...|++++|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT-----AGEMAVQRGLALHPGHPEAV-ARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHTTSTTCHHHH-HHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHH
Confidence 57799999999999999999999999999999999875 79999999999999999999 6899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc---CCchHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM---GEPDEELALTAAIL 203 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l---~~~~~Al~~~~~ai 203 (235)
+.+++++++++|++..+|+.+|.++..+| ++++|+.+++++++++|++..++.+++.++..+ |++++|++.+++++
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAG-QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999 599999999999999999999999999999999 99999999999999
Q ss_pred HhCCCChHHhHHHH
Q psy4772 204 AQDAKNYHAWQHRQ 217 (235)
Q Consensus 204 ~ldp~n~~aw~~r~ 217 (235)
+.+|.+..+|..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99999988876554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=171.57 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=149.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|+++++.+|.+..+|..+|.++...|+++ +|++.|++++.++|.+..+| ..+|.++...|++++
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD-----QAISAYTTAARLFQGTHLPY-LFLGMQHMQLGNILL 459 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHTTTTCSHHH-HHHHHHHHHHTCHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCccchHHH-HHHHHHHHHcCCHHH
Confidence 477888888888888888888888888888888888764 68888888888888888888 468888888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh------CCCC-hHHhHHHHHHHHHcCCchHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE------NSKN-YQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~------~P~n-~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
|+..|+++++++|.++.+|+.++.++...| ++++|+.+++++++. +|.+ ..+|..++.++...|++++|+..
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888888888888888888888888888 488888888888887 5665 67888888888888888888888
Q ss_pred HHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+++++.++|.+..+|..++.++...|+..+|.-
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 888888888888888888888888888766653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=154.43 Aligned_cols=158 Identities=8% Similarity=-0.012 Sum_probs=99.8
Q ss_pred hcHHHHHHHHHhHHhc----CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISH----DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~----~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+++++|+..|+++++. +|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~la~~~~~~~~ 92 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA-----LARNDFSQALAIRPDMPEVF-NYLGIYLTQAGN 92 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHccC
Confidence 4556666666666665 3455666666666666666553 56666666666666666666 456666666666
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++|+.++++++.++|.+..+|+.+|.++..+| ++++|+.+++++++++|.+.......+.. ...|++++|+..++++
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG-RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 666666666666666666666666666666666 36666666666666666666554444433 3446666666666666
Q ss_pred HHhCCCChHH
Q psy4772 203 LAQDAKNYHA 212 (235)
Q Consensus 203 i~ldp~n~~a 212 (235)
+...|.+...
T Consensus 171 ~~~~~~~~~~ 180 (275)
T 1xnf_A 171 FEKSDKEQWG 180 (275)
T ss_dssp HHHSCCCSTH
T ss_pred HhcCCcchHH
Confidence 6665555333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=169.42 Aligned_cols=181 Identities=15% Similarity=0.069 Sum_probs=120.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----------------------------HHHHHHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----------------------------EVIQREIDYCRD 97 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----------------------------~~~~~Al~~~~k 97 (235)
|++++|+..++++++.+|+ +.+|..+|.++...|++++ +.+++|+..+.+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5666666666666666666 6666666666666666542 123356666666
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++.++|.+..+| ..+|.++...|++++|+..+++++..+|.++.+|..+|.++..+| ++++|+.+++++++.+|.+..
T Consensus 330 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 330 AKELDPENIFPY-IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHTCSSCSHHH-HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHhChhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccch
Confidence 666666666666 456666666666666777677666666666666666666666666 367777777777766666644
Q ss_pred ------HhHHHHHHHHH---cCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 178 ------VWRHRQIIVEW---MGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 178 ------aw~~r~~~l~~---l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+|+.+|.++.. .|++++|+..+++++.++|++..+|..++.++..+|+..++.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 66677777766 677777777777777777777777777777666666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=154.44 Aligned_cols=180 Identities=8% Similarity=-0.022 Sum_probs=161.7
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhH----hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSA----WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a----~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
..|++++|+..++++++ .|.++.. |..+|.++..+|+++ +|+..|.+++.++|.++.+| ..+|.++...
T Consensus 49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~ 121 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS-----LAIQQYQAAVDRDTTRLDMY-GQIGSYFYNK 121 (272)
T ss_dssp HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCTHHH-HHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHhcCcccHHHH-HHHHHHHHHc
Confidence 35899999999999999 6666555 999999999999874 79999999999999999999 6899999999
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHH-HHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC---chHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRR-EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE---PDEEL 196 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~-~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~---~~~Al 196 (235)
|++++|+.+++++++++|.++.+|+++| .++... ++++|+.+++++++++|.+..+|+.+|.++..+++ +++|+
T Consensus 122 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK--EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 9999999999999999999999999999 555544 59999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhC---CC-----ChHHhHHHHHHHhhcCCcccccccc
Q psy4772 197 ALTAAILAQD---AK-----NYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 197 ~~~~~ai~ld---p~-----n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
..+++++.+. |. ...+|.++|.++..+|+..+|.-.|
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999987 54 2368999999999999887775433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=158.36 Aligned_cols=175 Identities=10% Similarity=-0.018 Sum_probs=158.3
Q ss_pred HHHHHHHHHhHHh-cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-hhhHHHHHHHhcccccHHH
Q psy4772 49 FSDELSYIEGLIS-HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-PWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 49 ~~~Al~~~~~aL~-~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-aw~~~~g~il~~~~~~~eA 126 (235)
+++|+..|++||+ ++|++..+|..+|.++...|+++ +|+..|+++++++|.++. +| ...|.++...|++++|
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE-----KVHSIYNRLLAIEDIDPTLVY-IQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTSSSSCTHHHH-HHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHhccccCccHHH-HHHHHHHHHhcCHHHH
Confidence 3899999999999 79999999999999999999764 799999999999999997 99 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKA-LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~-l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+..|+++++.+|.+..+|...+.+... +| ++++|+.+|+++++.+|+++.+|..++.++..+|++++|+..|++++..
T Consensus 154 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 154 RMIFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999998877666443 57 5999999999999999999999999999999999999999999999995
Q ss_pred ---CC-CChHHhHHHHHHHhhcCCccccc
Q psy4772 206 ---DA-KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 206 ---dp-~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+| +....|...+.+....|+.+.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66 48889999998888888765543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=170.44 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=98.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..++++++.+|+ +.+|..+|.++...|+++ +|+..+.+++.++|+++.+| +.+|.++...|++++|
T Consensus 257 ~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ-----EFFKFFQKAVDLNPEYPPTY-YHRGQMYFILQDYKNA 329 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH-----HHHHHHHHHhccCCCCHHHH-HHHHHHHHhcCCHHHH
Confidence 4556666666666666666 566666666666665553 35555555555555555555 3455555555555555
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-----------------
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM----------------- 189 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l----------------- 189 (235)
+..+++++.++|.+..+|..+|.++..+| ++++|+.+++++++.+|.++.+|..+|.++...
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQG-KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555555555555 245555555555555555555555555444444
Q ss_pred ---------------------------------CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 ---------------------------------GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ---------------------------------~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|++++|+..+++++.++|++..+|.++|.++..+|+..+|.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 55555666666666666777777777777776666665544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-20 Score=149.72 Aligned_cols=164 Identities=9% Similarity=-0.001 Sum_probs=156.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--IAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|+..++++++.+|.+..+|..+|.++...|+++ +|+..+.+++. .+|.+..+| +.+|.++...|++
T Consensus 84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~ 157 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE-----EAYQRLLEASQDTLYPERSRVF-ENLGLVSLQMKKP 157 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHTTCTTCTTHHHHH-HHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHhCccCcccHHHH-HHHHHHHHHcCCH
Confidence 588999999999999999999999999999999999874 79999999999 889999999 5899999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
++|+..++++++++|.+..+|..++.++..+| ++++|+.+++++++.+|.+..+|..++.++...|++++|+..+++++
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKER-EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHH
Q psy4772 204 AQDAKNYHAWQHR 216 (235)
Q Consensus 204 ~ldp~n~~aw~~r 216 (235)
.++|++..++..+
T Consensus 237 ~~~p~~~~~~~~l 249 (252)
T 2ho1_A 237 RLYPGSLEYQEFQ 249 (252)
T ss_dssp HHCTTSHHHHHHH
T ss_pred HHCCCCHHHHHHH
Confidence 9999999887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-20 Score=163.51 Aligned_cols=182 Identities=16% Similarity=0.119 Sum_probs=150.3
Q ss_pred Hhhhhh-hhhcHHHHHHHHHhHHhc---------CCCchhHhhhHHHHHhhcCCCCHH----------------------
Q psy4772 39 AIAYSQ-KCNLFSDELSYIEGLISH---------DVRNNSAWTQRYFVINHTTQFTPE---------------------- 86 (235)
Q Consensus 39 ~~~y~~-~~~~~~~Al~~~~~aL~~---------~P~~~~a~~~~g~~l~~~~~~~e~---------------------- 86 (235)
.+++.. ..|++++|+++|++|+++ +|....+|.++|+++..+|+++++
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 445553 358999999999999987 788889999999999999987531
Q ss_pred -----------------HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh---cccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 87 -----------------VIQREIDYCRDKIQIAPKNESPWNYLRGAVVN---AGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 87 -----------------~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~---~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
.+++|+.+|.++++++|+++.++ ..+|.+.. ..++.++|++.++++++++|++..++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~-~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT-SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 36788888888888888888888 46777744 3466788888888888888888888888
Q ss_pred HHHHHHHhhH---hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 147 RREILKALNK---DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 147 r~~~l~~l~~---~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
++.++..++. .+++|+.++++++..+|.+..+|.++|.++...|++++|+..+++|++++|++..+|+++|.++.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 8877766532 36789999999999999999999999999999999999999999999999999999999988763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-20 Score=167.64 Aligned_cols=179 Identities=11% Similarity=0.017 Sum_probs=163.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|.+..+|..++.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN-----KLYLISNDLVDRHPEKAVTW-LAVGIYYLCVNKISE 391 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTSHHHH-HHHHHHHHHTTCHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHhhCcccHHHH-HHHHHHHHHhccHHH
Confidence 578899999999999999999999999999999888764 78999999999999999999 578999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|+++++++|.+..+|+.++.++...| ++++|+..++++++.+|.+..+|+.++.++.+.|++++|++.+++++.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+|.++.+|..++.++...|+..+|.-
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999988888776653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=149.81 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=149.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|+++++++|.++.+|..+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD-----AAYEAFDSVLELDPTYNYAH-LNRGIALYYGGRDKL 129 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCTHHH-HHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH-----HHHHHHHHHHhcCccccHHH-HHHHHHHHHhccHHH
Confidence 589999999999999999999999999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------------------------------
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------------------------------ 175 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------------------------------ 175 (235)
|+..++++++++|++..+....+.+ ...| ++++|+.++++++...|.+
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 130 AQDDLLAFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccc
Confidence 9999999999999999877766655 4456 4888888888888877765
Q ss_pred -------hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 176 -------YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 176 -------~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
..+|..+|.++...|++++|+..+++++.++|.+...+ +.++..+|+..++.
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC-
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhH
Confidence 57888889999999999999999999999999886554 55555566555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=147.14 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=153.7
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|.++.+|+.+|.++...|+++ +|+..+.++++++|.++.+| +.+|.++...|++++|+..+++++.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYR-----QATASIEDALKSDPKNELAW-LVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcccHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHhCccchHHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 57889999999999999999874 79999999999999999999 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hHhHHHHHHHHHHHHH--hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 142 TVWQYRREILKAL-NKDLHQELKYIGEKIK--ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 142 ~aw~~r~~~l~~l-~~~~eeal~~~~~al~--~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
.+|..++.++..+ | ++++|+.+++++++ .+|.+..+|+.+|.++...|++++|+..+++++..+|.+..+|..++.
T Consensus 77 ~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLN-RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTC-CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999 9 59999999999999 778889999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccccc
Q psy4772 219 VINLLDDDDRGVL 231 (235)
Q Consensus 219 ~l~~l~~~~~~~~ 231 (235)
++..+|+..++.-
T Consensus 156 ~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 156 TKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 9999998877654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=166.06 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=146.8
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
+|.++.+|+.+|.++...|+++ +|+..+.+++..+|. ..+| +.+|.++...|++++|+..+++++.++|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~l~~~~~-~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 305 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPL-----GAHEDIKKAIELFPR-VNSY-IYMALIMADRNDSTEYYNYFDKALKLDSNNSS 305 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHH-----HHHHHHHHHHHHCCC-HHHH-HHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH
T ss_pred ChHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCcc-HHHH-HHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH
Confidence 4788999999999999999874 799999999999999 8888 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+|..++.++..+| ++++|+..++++++.+|.+..+|..+|.++...|++++|+..+++++..+|.+..+|.++|.++..
T Consensus 306 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 306 VYYHRGQMNFILQ-NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHHTT-CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 9999999999999 489999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCcccccc
Q psy4772 223 LDDDDRGVL 231 (235)
Q Consensus 223 l~~~~~~~~ 231 (235)
+|+..++.-
T Consensus 385 ~~~~~~A~~ 393 (514)
T 2gw1_A 385 KNDFDKALK 393 (514)
T ss_dssp TTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 888776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=146.68 Aligned_cols=159 Identities=9% Similarity=0.051 Sum_probs=145.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~ 119 (235)
.|++++|+..|+++++..|.++ .+++.+|.++..+|+++ +|+..|+++++++|+++. ++ +.+|.++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~-----~A~~~~~~~l~~~P~~~~~~~a~-~~~g~~~~~ 90 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP-----LAQAAIDRFIRLNPTHPNIDYVM-YMRGLTNMA 90 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCTTHHHHH-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHCcCCCcHHHHH-HHHHHHHHh
Confidence 4899999999999999999875 79999999999999874 799999999999999987 77 678988875
Q ss_pred ------------------ccccHHHHHHHHHHHHcCCCChHHH-----------------HHHHHHHHHhhHhHHHHHHH
Q psy4772 120 ------------------GEKSERALALTADAITMNPANYTVW-----------------QYRREILKALNKDLHQELKY 164 (235)
Q Consensus 120 ------------------~~~~~eAl~~~~~al~l~P~~~~aw-----------------~~r~~~l~~l~~~~eeal~~ 164 (235)
.|++++|+..|+++++.+|++..++ ..+|.++...| ++++|+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~ 169 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG-AWVAVVNR 169 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHH
Confidence 5789999999999999999999887 56788888898 59999999
Q ss_pred HHHHHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 165 IGEKIKENSKNY---QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 165 ~~~al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++++.+|+++ .+++.+|.++..+|++++|++.+++++...|++..
T Consensus 170 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 170 VEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 999999999987 68999999999999999999999999999998764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=153.23 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=144.3
Q ss_pred HHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHH
Q psy4772 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAIT 135 (235)
Q Consensus 59 aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~ 135 (235)
...++|.++.+++.+|.++...|+++ +|+..|.+++..+|.+ +.+| +.+|.++...|++++|+..|++++.
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~~l~~~p~~~~~~~a~-~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQGKYD-----RAIEYFKAVFTYGRTHEWAADAQ-FYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCHH-----HHHHHHHHHGGGCSCSTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHhCCCCcchHHHH-HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 35678999999999999999999875 7999999999999999 7889 7899999999999999999999999
Q ss_pred cCCCC---hHHHHHHHHHHHH--------hhHhHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHHHH
Q psy4772 136 MNPAN---YTVWQYRREILKA--------LNKDLHQELKYIGEKIKENSKNYQVW-----------------RHRQIIVE 187 (235)
Q Consensus 136 l~P~~---~~aw~~r~~~l~~--------l~~~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~l~ 187 (235)
++|++ ..+++.+|.++.. +|+ +++|+..++++++.+|++..++ +.+|.++.
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98855 6789999999999 894 9999999999999999998887 88899999
Q ss_pred HcCCchHHHHHHHHHHHhCCC---ChHHhHHHHHHHhhcC
Q psy4772 188 WMGEPDEELALTAAILAQDAK---NYHAWQHRQWVINLLD 224 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~---n~~aw~~r~~~l~~l~ 224 (235)
..|++++|+..|++++..+|+ ...+++.+|.++..+|
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 5569999999997663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=147.13 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=75.6
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
++-.+-..++++|+++|+++.+|+.+|.++..+|+++ +|+..|.+++.++|.++.+| +.+|.++..+|++++|+
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~-----eA~~~~~~al~~~P~~~~~~-~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIE-----EAEVFFRFLCIYDFYNVDYI-MGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHccHHHHH
Confidence 3344445556666666666666666666666666553 56666666666666666666 45666666666666666
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.+|+++++++|+++.+|+++|.++..+| ++++|+.+|++++++.|+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~lg-~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLRLK-APLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCH
Confidence 6666666666666666666666666666 3666666666666666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-21 Score=147.76 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=111.9
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..+.+++.++|+++.+| +.+|.++...|++++|+..|++++.++|.++.+|+++|.++..+| ++++|+.+|+++++++
T Consensus 23 ~~l~~al~l~p~~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE-QFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhC
Confidence 45778999999999999 799999999999999999999999999999999999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
|+++.+|+++|.++..+|++++|+.+|++++.+.|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=148.02 Aligned_cols=152 Identities=13% Similarity=0.010 Sum_probs=125.9
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh-ccccc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN-AGEKS 123 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~-~~~~~ 123 (235)
..|++++|+..|+++++.+|+++.+|+.+|.++..+|+++ +|+..+++++.++| ++..+ ...+.+.. ..+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~-----~A~~~~~~a~~~~p-~~~~~-~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFE-----LAQELLATIPLEYQ-DNSYK-SLIAKLELHQQAAE 90 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHH-----HHHHHHTTCCGGGC-CHHHH-HHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHH-----HHHHHHHHhhhccC-ChHHH-HHHHHHHHHhhccc
Confidence 3578899999999999999999999999999999988864 78899999999999 76655 34444422 22344
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC--hHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN--YQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n--~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
.+|+..++++++++|+++.+++.+|.++..+| ++++|+..++++++++|.. ..+|..++.++..+|+.++|+..|++
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELACELAVQYNQVG-RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 56789999999999999999999999999998 4899999999999999876 56899999999999999999999998
Q ss_pred HHH
Q psy4772 202 ILA 204 (235)
Q Consensus 202 ai~ 204 (235)
+|.
T Consensus 170 al~ 172 (176)
T 2r5s_A 170 QLY 172 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-20 Score=175.39 Aligned_cols=163 Identities=12% Similarity=-0.056 Sum_probs=151.6
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH--------HhCCCCCchhhHHHHHHHhcccccHHHHHHHH
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKI--------QIAPKNESPWNYLRGAVVNAGEKSERALALTA 131 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal--------~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~ 131 (235)
..++|+++.+++.+| ...|++ ++|++.+.+++ +.+|++..+| +.+|.++...|++++|+..++
T Consensus 387 p~~~p~~~~a~~~~a---~~~~~~-----~~A~~~~~~al~~~~~~~~~~~p~~~~~~-~~~a~~~~~~g~~~~A~~~~~ 457 (681)
T 2pzi_A 387 PLVDPTDVAASVLQA---TVLSQP-----VQTLDSLRAARHGALDADGVDFSESVELP-LMEVRALLDLGDVAKATRKLD 457 (681)
T ss_dssp BCCCTTSTTHHHHHH---TTTCCH-----HHHHHHHHHHHTC-------CCTTCSHHH-HHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCCCCCcchHHhhc---ccccCH-----HHHHHHHHHhhhhcccccccccccchhHH-HHHHHHHHhcCCHHHHHHHHH
Confidence 367999999999888 555554 58999999999 9999999999 689999999999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 132 DAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 132 ~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++++|++..+|+++|.++..+| ++++|+..|+++++++|+++.+|+++|.++..+|++++ +..|++|++++|++..
T Consensus 458 ~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~ 535 (681)
T 2pzi_A 458 DLAERVGWRWRLVWYRAVAELLTG-DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS 535 (681)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred HHhccCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence 999999999999999999999999 59999999999999999999999999999999999999 9999999999999999
Q ss_pred HhHHHHHHHhhcCCcccccccc
Q psy4772 212 AWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 212 aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+|+++|.++..+|+..+|.-.|
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988776544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=152.50 Aligned_cols=160 Identities=9% Similarity=0.027 Sum_probs=138.4
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHH----------------HHHHHhcccccHHHHH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYL----------------RGAVVNAGEKSERALA 128 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~----------------~g~il~~~~~~~eAl~ 128 (235)
..++.+..+|.++...|+++ +|+..|.+++.++|+++.+| +. +|.++...|++++|+.
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNG-----QAVSYFRQTIALNIDRTEMY-YWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCHHHHHHH-HHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCChHHH-HHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 35778899999999999875 79999999999999999999 68 9999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC--chHHHHHHHHHHHhC
Q psy4772 129 LTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE--PDEELALTAAILAQD 206 (235)
Q Consensus 129 ~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~--~~~Al~~~~~ai~ld 206 (235)
.|+++++++|+++.+|+.+|.++..+| ++++|+.+|+++++++|+++.+|+++|.++...|. ...+...+++++..+
T Consensus 76 ~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (208)
T 3urz_A 76 FYKELLQKAPNNVDCLEACAEMQVCRG-QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999 59999999999999999999999999999977664 456678888887554
Q ss_pred CCChHHhHHHHHHHhhcCCccccccc
Q psy4772 207 AKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|. ..+|+++|.++..+|+..+|.-.
T Consensus 155 ~~-~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 155 KM-QYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp HH-HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHccCHHHHHHH
Confidence 43 34788899988878877666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=161.49 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=112.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----ccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~~ 122 (235)
++|++|+.+|++||+++|++++++..+|.+...++.+.+ .++|++.+.++++++|+++.++ ..+|.++.. .+.
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~--~~~al~~~~~al~l~p~~~~~~-~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP--SQNAIDPLRQAIRLNPDNQYLK-VLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHHHCSSCHHHH-HHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHHhhhhH
Confidence 578999999999999999999999999998765543211 1146666666666666666666 345544433 244
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------------
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------------- 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------------- 189 (235)
+++|+.++++++.++|.+..+++++|.++...| .+++|+.+++++++.+|++..+|+++|.++...
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD-EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 556666666666666666666666666666666 366666666666666666666666666554322
Q ss_pred ------CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 ------GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ------~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+.+++|+..+++++.++|.+..+|.++|.++..+|+..+|+
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 11345555566666666666666666666655555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-21 Score=171.23 Aligned_cols=174 Identities=10% Similarity=-0.035 Sum_probs=149.2
Q ss_pred hcHHHHHHHHHh----HHhcCCCchhHhhhHHHHHh------------hcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh
Q psy4772 47 NLFSDELSYIEG----LISHDVRNNSAWTQRYFVIN------------HTTQFTPEVIQREIDYCRDKIQIAPKNESPWN 110 (235)
Q Consensus 47 ~~~~~Al~~~~~----aL~~~P~~~~a~~~~g~~l~------------~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~ 110 (235)
..+++|+..+.. +|.+.|+. +|..+|.... .++++. +|+..+.+++..+|.+..+|
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~-----~A~~~~~~a~~~~p~~a~~~- 150 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFE-----KAKESWEMNSEEKLEQSTIV- 150 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEE-----CCCCGGGCCHHHHHHHHHHH-
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecc-----cccchhcCCHHHHHHHHHHH-
Confidence 467999999999 99999987 7777776543 233333 57778888888899999999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+.+|.++...|++++|+.+|++++.++|.+ ..+|+++|.++..+| ++++|+.+|+++++++|.+
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ-AFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCc
Confidence 578999999999999999999999999998 589999999999999 4899999999999999999
Q ss_pred hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 176 YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 176 ~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+.+|+.+|.++..+|++++|+.+|++|+.++|++..+|..++.++..+|+..++
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887776655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-19 Score=150.41 Aligned_cols=173 Identities=10% Similarity=0.034 Sum_probs=147.3
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHH--HHHhcccc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRG--AVVNAGEK 122 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g--~il~~~~~ 122 (235)
..|++++|+..+++ |.+++++..+|.++..+|+++ +|+..+.++++++|++.... ...+ .++...|+
T Consensus 113 ~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~-----~A~~~l~~~~~~~p~~~~~~-l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD-----LARKELKKMQDQDEDATLTQ-LATAWVSLAAGGEK 181 (291)
T ss_dssp HTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHCTTH
T ss_pred HCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCcCcHHHH-HHHHHHHHHhCchH
Confidence 35899999999998 999999999999999999875 79999999999999976332 2222 33445689
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchH-HHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE-ELALTAA 201 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~-Al~~~~~ 201 (235)
+++|+.+|+++++.+|.++.+|+.+|.++..+| ++++|...++++++++|+++.+|+++|.++..+|+..+ +..++++
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999 49999999999999999999999999999999999976 5689999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+++++|+++.+..+ ....+.++++...|
T Consensus 261 ~~~~~P~~~~~~d~----~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 261 LKDAHRSHPFIKEY----RAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHCTTCHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHH----HHHHHHHHHHHHHc
Confidence 99999999987543 23344444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=139.16 Aligned_cols=159 Identities=8% Similarity=0.069 Sum_probs=150.3
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
...+|..+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++|+..+++++.++|.+..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----QAVMLLEQVYDADAFDVDVA-LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----HHHHHHTTTCCTTSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhCccChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4678899999999999874 79999999999999999999 68999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.++.++...| ++++|+.+++++++.+|.+..+|..+|.++...|++++|+..+++++..+|.+..+|..++.++..+|+
T Consensus 81 ~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 81 VLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 9999999999 599999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccc
Q psy4772 226 DDRGVL 231 (235)
Q Consensus 226 ~~~~~~ 231 (235)
..++.-
T Consensus 160 ~~~A~~ 165 (186)
T 3as5_A 160 HEEALP 165 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=152.98 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=153.0
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
-|++..+++.+|..+...|+++ +|+..|.++++++|+++.++ +.+|.++...|++++|+..+++++..+|+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYT-----DALPLLXDAWQLSNQNGEIG-LLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHTTSCHHHH-HHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHH-----HHHHHHHHHHHhCCcchhHH-HHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 4999999999999999999875 79999999999999999999 68999999999999999999999999998887
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--hHHhHHHHHHH
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--YHAWQHRQWVI 220 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~~aw~~r~~~l 220 (235)
.+...+..+...++ .++|+..++++++.+|+++.+++.+|.++...|++++|+..+.+++.++|++ ..++.+++.++
T Consensus 187 ~~~~~~~~l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 QGLVAQIELLXQAA-DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 77777877888884 7889999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhcCCcccccccc
Q psy4772 221 NLLDDDDRGVLEY 233 (235)
Q Consensus 221 ~~l~~~~~~~~~~ 233 (235)
..+|+.+++...|
T Consensus 266 ~~~g~~~~a~~~~ 278 (287)
T 3qou_A 266 AALGTGDALASXY 278 (287)
T ss_dssp HHHCTTCHHHHHH
T ss_pred HHcCCCCcHHHHH
Confidence 9999988876654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=142.79 Aligned_cols=164 Identities=10% Similarity=0.058 Sum_probs=142.3
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
||...+.+..+|.++...|+++ +|+..|.++++++|+++.+| +.+|.++...|++++|+..+++++.++| ++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHA-----QALNVIQTLSDELQSRGDVK-LAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHH-----HHHHHHHTSCHHHHTSHHHH-HHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCcHHHH-HHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 6777888999999999999874 79999999999999999999 6899999999999999999999999999 887
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--hHHhHHHHHHH
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--YHAWQHRQWVI 220 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~~aw~~r~~~l 220 (235)
.+..++.+....+....+|+..++++++++|+++.+|+.+|.++...|++++|+..+++++.++|.+ ..+|.+++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 7766665533221123457999999999999999999999999999999999999999999999986 56999999999
Q ss_pred hhcCCcccccccc
Q psy4772 221 NLLDDDDRGVLEY 233 (235)
Q Consensus 221 ~~l~~~~~~~~~~ 233 (235)
..+|+.+++...|
T Consensus 155 ~~~g~~~~A~~~y 167 (176)
T 2r5s_A 155 SALGQGNAIASKY 167 (176)
T ss_dssp HHHCSSCHHHHHH
T ss_pred HHhCCCCcHHHHH
Confidence 9999998887655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=138.62 Aligned_cols=117 Identities=9% Similarity=-0.122 Sum_probs=63.9
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 95 ~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
|.+++.++|++..+| +.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+| ++++|+.+|+++++++|+
T Consensus 10 ~~~al~~~p~~~~~~-~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNEISSDTLEQL-YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG-QYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTTCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHhhHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCC
Confidence 445555555555555 345555555555555555555555555555555555555555555 255555555555555555
Q ss_pred ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 175 NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 175 n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
++.+|+++|.++..+|++++|+.+|++++.++|.++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 555555555555555555555555555555555554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=142.22 Aligned_cols=159 Identities=9% Similarity=-0.083 Sum_probs=144.7
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
.+.+++.+|.++...|+++ +|+..|++++...|.++ .++ +.+|.++...|++++|+..|+++++++|++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~-----~A~~~~~~~~~~~p~~~~~~~a~-~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWR-----QAITQLEALDNRYPFGPYSQQVQ-LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTSTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCChHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 5678999999999999875 79999999999999986 578 68999999999999999999999999999986
Q ss_pred ---HHHHHHHHHHHh------------------hHhHHHHHHHHHHHHHhCCCChHHh-----------------HHHHH
Q psy4772 143 ---VWQYRREILKAL------------------NKDLHQELKYIGEKIKENSKNYQVW-----------------RHRQI 184 (235)
Q Consensus 143 ---aw~~r~~~l~~l------------------~~~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~ 184 (235)
+++.+|.++..+ | ++++|+..++++++.+|++..++ ..+|.
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999873 5 48999999999999999999877 57888
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCCh---HHhHHHHHHHhhcCCcccccc
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNY---HAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~---~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++...|++.+|+..++++++..|+++ .+++.+|.++..+|+..++.-
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999999999987 679999999999999877653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-20 Score=141.05 Aligned_cols=126 Identities=9% Similarity=-0.093 Sum_probs=116.5
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~ 132 (235)
-..|+++|+++|+++.+++.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+|++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYE-----DAHXVFQALCVLDHYDSRFF-LGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChH-----HHHHHHHHHHHcCcccHHHH-HHHHHHHHHHhhHHHHHHHHHH
Confidence 35688999999999999999999999999875 79999999999999999999 6899999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 133 AITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
++.++|+++.+|+++|.++..+| ++++|+.+++++++++|.++.....+..+
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXG-ELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHhcCCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 99999999999999999999999 59999999999999999998765544433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-20 Score=162.14 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=143.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---------------chh
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---------------SPW 109 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---------------~aw 109 (235)
.+..+++|+..+++++..+|.++.+|..+|.++..+|+++ +|+..|.+++.++|.+. .+|
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~-----~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK-----QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999875 79999999999999994 888
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+++|.++..+|++++|+.+|+++|+++|.++.+|+.+|.++..+| ++++|+.+++++++++|.+..+|..++.++..+
T Consensus 200 -~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 200 -LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999 599999999999999999999999999999999
Q ss_pred CCchHH-HHHHHHHHHh
Q psy4772 190 GEPDEE-LALTAAILAQ 205 (235)
Q Consensus 190 ~~~~~A-l~~~~~ai~l 205 (235)
|++++| ...|++++..
T Consensus 278 ~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 278 RRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999888 4577777653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=136.86 Aligned_cols=120 Identities=10% Similarity=-0.112 Sum_probs=60.6
Q ss_pred HHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHH
Q psy4772 55 YIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAI 134 (235)
Q Consensus 55 ~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al 134 (235)
.|+++++++|++..+++.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+|++++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWD-----DAQKIFQALCMLDHYDARYF-LGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHH-----HHHHHHHHHHHhCCccHHHH-HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555555555555555555555442 45555555555555555555 345555555555555555555555
Q ss_pred HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 135 TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 135 ~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.++|.++.+|+++|.++..+| ++++|+.+++++++++|.++..+..
T Consensus 80 ~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHLQLG-DLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHCTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcchHHH
Confidence 555555555555555555555 2555555555555555555444333
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=151.56 Aligned_cols=163 Identities=7% Similarity=-0.004 Sum_probs=138.5
Q ss_pred hhcHHHHHHHHHhHHhcCCC------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVR------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~~ 113 (235)
.|++++|+.+|++++.+.++ .+.+|.++|.++..+|+++ +|+..|.+++.+.|... .+| ..+
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~~~~g~~~~~a~~~-~~l 123 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV-----NAVDSLENAIQIFTHRGQFRRGANFK-FEL 123 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH-HHH
Confidence 47899999999999999643 3789999999999999875 79999999999998763 477 479
Q ss_pred HHHHhcc-cccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-------Hh
Q psy4772 114 GAVVNAG-EKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-------VW 179 (235)
Q Consensus 114 g~il~~~-~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-------aw 179 (235)
|.++... |++++|+.+|++++++.|.. ..++.++|.++..+| ++++|+.++++++++.|.+.. +|
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999995 99999999999999999876 568999999999999 599999999999999998764 67
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+.+|.++..+|++++|+.++++++.++|++..+...
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 899999999999999999999999999999876544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=135.71 Aligned_cols=129 Identities=10% Similarity=-0.091 Sum_probs=118.3
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..+.+++.++|++..++ +.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+| ++++|+.+++++++++
T Consensus 5 ~~l~~al~~~p~~~~~~-~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQL-YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG-LYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHH-HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcC
Confidence 56888999999999999 789999999999999999999999999999999999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
|.++.+|+++|.++..+|++++|+.++++++.++|.++..+..+..+...+
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887776665443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=148.32 Aligned_cols=152 Identities=9% Similarity=-0.026 Sum_probs=142.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++|+.+|+++.+++.+|.++..+|+++ +|+..+.+++..+|+....+ ...+..+...++.++
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~-----~A~~~l~~~~~~~p~~~~~~-~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSE-----DAEAVLXTIPLQDQDTRYQG-LVAQIELLXQAADTP 203 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH-----HHHHHHTTSCGGGCSHHHHH-HHHHHHHHHHHTSCH
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHH-----HHHHHHHhCchhhcchHHHH-HHHHHHHHhhcccCc
Confidence 488999999999999999999999999999999999875 79999999999999666555 566677888899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC--hHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN--YQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n--~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|+..+++++.++|+++.+++.+|.++...| ++++|+..++++++++|.+ ..++..++.++..+|+.++|+..|++++
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVG-RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999 4999999999999999999 8999999999999999999999999998
Q ss_pred H
Q psy4772 204 A 204 (235)
Q Consensus 204 ~ 204 (235)
.
T Consensus 283 ~ 283 (287)
T 3qou_A 283 Y 283 (287)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-20 Score=171.01 Aligned_cols=172 Identities=10% Similarity=0.029 Sum_probs=138.5
Q ss_pred cHHHHHHHHHh----HHhcCCCchhHhhhHHHHHh------------hcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhH
Q psy4772 48 LFSDELSYIEG----LISHDVRNNSAWTQRYFVIN------------HTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111 (235)
Q Consensus 48 ~~~~Al~~~~~----aL~~~P~~~~a~~~~g~~l~------------~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~ 111 (235)
.++.|+..+.+ +|.++|.. +|.++|.... .++++ ++|+..+.+++..+|+...+| +
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~-----~~A~~~~~~~~~~~~~~a~~~-~ 272 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSF-----EKAKESWEMDTKEKLEQAAIV-K 272 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEE-----ECCCCGGGSCHHHHHHHHHHH-H
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhc-----ccCcchhhcCHHHHHHHHHHH-H
Confidence 56888888888 88888875 7777775432 22233 257777888888888888888 5
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCC---------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPAN---------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~---------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
.+|.++...|++++|+.+|++++.++|.+ ..+|+++|.++.+++ ++++|+.+|+++|+++|++.
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~ 351 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-EYTKAVECCDKALGLDSANE 351 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccH
Confidence 78999999999999999999999999988 688999999999998 48999999999999999999
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
.+|+++|.++..+|++++|+.+|++|+.++|++..+|..++.++..+++..+
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888877766543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-19 Score=146.70 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=154.2
Q ss_pred hcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchhhHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPWNYLRGAVV 117 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw~~~~g~il 117 (235)
..+++|+..+.+++..+ |..+.+|..+|.++...|+++ +|+..+.+++.+ +|....+| ..+|.++
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~l~~~~ 95 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-----EAAHLLNDALAIREKTLGKDHPAVAATL-NNLAVLY 95 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCTTCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHHHHHHcCCcchHHHHHH-HHHHHHH
Confidence 34455555555555444 888999999999999999875 799999999988 46677788 5799999
Q ss_pred hcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--------CCCChHHhHH
Q psy4772 118 NAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKE--------NSKNYQVWRH 181 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--------~P~n~~aw~~ 181 (235)
...|++++|+..+.+++.+ +|....++.++|.++..+| ++++|+.++++++++ +|....++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998 6888999999999999999 599999999999999 8888899999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHh-------------------------------------------------CCCChHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQ-------------------------------------------------DAKNYHA 212 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~l-------------------------------------------------dp~n~~a 212 (235)
+|.++...|++++|+.++++++.+ +|....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999986 3566678
Q ss_pred hHHHHHHHhhcCCccccccc
Q psy4772 213 WQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 213 w~~r~~~l~~l~~~~~~~~~ 232 (235)
+..+|.++..+|+..+|.-.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887766543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=152.05 Aligned_cols=179 Identities=7% Similarity=0.029 Sum_probs=158.2
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhh-------cCCCCHH--HHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhc
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINH-------TTQFTPE--VIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~-------~~~~~e~--~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~ 119 (235)
..++..|+++|..+|.++.+|...|.++.. .|+++.+ ..++|+..|.++++ ++|++..+| +..|.++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~-~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY-FAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH-HHHHHHHHh
Confidence 478899999999999999999999999886 6776310 01369999999997 899999999 689999999
Q ss_pred ccccHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH-HHcCCchHHHH
Q psy4772 120 GEKSERALALTADAITMNPANY-TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV-EWMGEPDEELA 197 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~-~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l-~~l~~~~~Al~ 197 (235)
.|++++|...|+++++++|.++ .+|...+.++.+.|. +++|+..|+++++..|.++..|...+.+. ...|++++|+.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 9999999999999999999986 699999999999995 99999999999999999998888777764 46899999999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.|+++++.+|+++.+|...+.++..+|+.+++.
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 999999999999999999999988888775543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=125.87 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=88.0
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
...| +.+|.++...|++++|+..|+++++++|.++.+|+++|.++..+| ++++|+.+++++++++|.++.+|+.+|.+
T Consensus 4 a~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEA-RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3455 467777777777777888888888878877778888888877777 47788888888888888888888888888
Q ss_pred HHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHHhh
Q psy4772 186 VEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVINL 222 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l~~ 222 (235)
+..+|++++|+..+++++.++ |.+..++..++.+...
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 888888888888888888877 7777777777766543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=120.57 Aligned_cols=135 Identities=15% Similarity=0.339 Sum_probs=126.2
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.+|+.+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++|+..+++++..+|.+..+|+.+
T Consensus 2 ~~~~~l~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYD-----EAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHH-----HHHHHHHHHHHcCCcchhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 57889999999998764 79999999999999999999 5789999999999999999999999999999999999
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+.++...| ++++|+..++++++.+|.+..+|..++.++...|++++|+..+++++.++|.+
T Consensus 76 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 76 GNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999 59999999999999999999999999999999999999999999999999864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-17 Score=134.57 Aligned_cols=159 Identities=9% Similarity=0.000 Sum_probs=88.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhh----cCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc---
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINH----TTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA--- 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~----~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~--- 119 (235)
+++++|+.+|+++++.+ ++.+++++|.++.. .+++ ++|+..|.+++..+ ++.++ +.+|.++..
T Consensus 56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~-----~~A~~~~~~a~~~~--~~~a~-~~lg~~~~~~~~ 125 (273)
T 1ouv_A 56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT-----NKALQYYSKACDLK--YAEGC-ASLGGIYHDGKV 125 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH-----HHHHHHHHHHHHTT--CHHHH-HHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH-----HHHHHHHHHHHHcC--CccHH-HHHHHHHHcCCC
Confidence 44555555555555553 55555555555555 4433 34555555555553 45555 355555555
Q ss_pred -ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cC
Q psy4772 120 -GEKSERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MG 190 (235)
Q Consensus 120 -~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~ 190 (235)
.+++++|+.+++++++++ +..+++++|.++.. .+ ++++|+.+++++++. .++.+++.+|.++.. .+
T Consensus 126 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCC
T ss_pred cccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCc
Confidence 555566666666665554 45555555555555 44 356666666665554 245556666666655 56
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
++++|+.+++++++.+| ..+++++|.++..
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 66666666666666544 5555566665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=129.98 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=70.6
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..+| +.+|.++...|++++|+.+|+++++++|.++.+|+++|.++..+| ++++|+.+++++++++|.+..+|+.+|.+
T Consensus 11 a~~~-~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKL-KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444 355666666666666666666666666666666666666666666 36666666666666666666666666666
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+..+|++++|+.++++++.++|++..+|..++...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 66666666666666666666666666665555543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=144.14 Aligned_cols=180 Identities=8% Similarity=0.018 Sum_probs=162.3
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw 109 (235)
.|++++|+.++++++++ .|..+.++..+|.++...|+++ +|+..+.+++.+ +|....++
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-----DAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 47899999999999995 7888999999999999999875 789999999988 46667788
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--------CC
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMN--------PANYTVWQYRREILKALNKDLHQELKYIGEKIKE--------NS 173 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~--------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--------~P 173 (235)
+.+|.++...|++++|+.++++++.+. |....++..+|.++..+| ++++|+.+++++++. +|
T Consensus 115 -~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 115 -NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred -HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 579999999999999999999999884 778889999999999999 599999999999998 88
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHh------------------------------------------------
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQ------------------------------------------------ 205 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l------------------------------------------------ 205 (235)
....+|+.+|.++...|++++|+..+++++.+
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 88899999999999999999999999999984
Q ss_pred -CCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 206 -DAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 206 -dp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+|.+..+|.++|.++..+|+..+|.-.
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577888899999999888988777543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=123.55 Aligned_cols=119 Identities=11% Similarity=0.048 Sum_probs=111.1
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
|..+..|..+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++..+|++++|+..++++++++|+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWP-----NAVKAYTEMIKRAPEDARGY-SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CchHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 567889999999999999875 79999999999999999999 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhC------CCChHHhHHHHHHHHHc
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKEN------SKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~------P~n~~aw~~r~~~l~~l 189 (235)
|+.+|.++..+| ++++|+.+++++++++ |.+..++..++.+..++
T Consensus 75 ~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 75 YIRKATAQIAVK-EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999 5999999999999999 99999999988877653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=153.51 Aligned_cols=142 Identities=8% Similarity=-0.044 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+++|+..|.++++++|.+..+| +.+|.++...|++++|+..++++++++|++..+|+.+|.++..+| ++++|+.++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 82 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAW-LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ-RHAEAAVLLQQ 82 (568)
T ss_dssp ----------------CCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 4589999999999999999999 689999999999999999999999999999999999999999999 59999999999
Q ss_pred HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc---CCcccccc
Q psy4772 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL---DDDDRGVL 231 (235)
Q Consensus 168 al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l---~~~~~~~~ 231 (235)
+++++|++..+|+.+|.++..+|++++|++.++++++++|++..++.+++.++..+ |+..++.-
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888 77766554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-18 Score=132.47 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=86.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCC-------ChH-----HHHHHHHHHHHhhHhHHHHHHHHHHHHHh-------
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPA-------NYT-----VWQYRREILKALNKDLHQELKYIGEKIKE------- 171 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~-------~~~-----aw~~r~~~l~~l~~~~eeal~~~~~al~~------- 171 (235)
..+|.++...|++++|+.+|+++|+++|+ +.. +|+++|.++..+|+ +++|+.+++++|++
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccccC
Confidence 35677777777777777777777777777 333 88888988888884 88888888888888
Q ss_pred CCCChHHh----HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 172 NSKNYQVW----RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 172 ~P~n~~aw----~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+|++..+| +++|.++..+|++++|+.+|++|++++|.+.....-+..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99998899 99999999999999999999999999988876655444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=141.48 Aligned_cols=164 Identities=10% Similarity=0.003 Sum_probs=143.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHHHHHHhccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLRGAVVNAGE 121 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~g~il~~~~ 121 (235)
++++|+..|+++ |.++..+|+++ +|+..|.+++.+.++. ..+| ..+|.++..+|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~g 91 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELN-----LAGDSFLKAADYQKKAGNEDEAGNTY-VEAYKCFKSGG 91 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHTT
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHH-----HHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHCC
Confidence 589999999888 66788889885 7999999999986543 4677 47999999999
Q ss_pred ccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCC------hHHhHHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPAN------YTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKN------YQVWRHRQIIVEW 188 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n------~~aw~~r~~~l~~ 188 (235)
++++|+.++++++.+.|.. ..+++++|.++... | ++++|+.+|+++++++|.+ ..++.++|.++..
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999998865 56899999999995 9 5999999999999999865 5689999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCChH-------HhHHHHHHHhhcCCccccccc
Q psy4772 189 MGEPDEELALTAAILAQDAKNYH-------AWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 189 l~~~~~Al~~~~~ai~ldp~n~~-------aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+|++++|+.++++++.+.|++.. +|.++|.++..+|+..+|.-.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999998865 578889999999988776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=131.54 Aligned_cols=169 Identities=10% Similarity=0.076 Sum_probs=151.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhh----cCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc--
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINH----TTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA-- 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~----~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~-- 119 (235)
.+++++|+.+|+++++ |+++.+++++|.++.. .++++ +|+..|.+++.++ ++.++ +.+|.++..
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~-----~A~~~~~~a~~~~--~~~a~-~~lg~~~~~g~ 88 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLK-----KAASFYAKACDLN--YSNGC-HLLGNLYYSGQ 88 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHH-----HHHHHHHHHHHTT--CHHHH-HHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHH-----HHHHHHHHHHHCC--CHHHH-HHHHHHHhCCC
Confidence 4789999999999999 8899999999999999 88764 7999999999986 78899 689999999
Q ss_pred --ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----c
Q psy4772 120 --GEKSERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----M 189 (235)
Q Consensus 120 --~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l 189 (235)
.+++++|+..++++++.+ ++.+++++|.++.. .+ ++++|+.+++++++.+ +..+++++|.++.. .
T Consensus 89 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR-DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred CcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC
Confidence 999999999999999984 89999999999999 88 5999999999999976 78899999999998 9
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh----cCCcccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINL----LDDDDRGVL 231 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~----l~~~~~~~~ 231 (235)
+++++|+.+++++++. .++.+++++|.++.. .++..++.-
T Consensus 164 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 164 KDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 9999999999999988 468899999999977 777666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=129.84 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=118.2
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
...++++|.++...|+++ +|+..|.+++ +| ++.+| +.+|.++...|++++|+..+++++.++|.+..+|++
T Consensus 6 ~~~~~~~g~~~~~~~~~~-----~A~~~~~~a~--~~-~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWK-----GALDAFSAVQ--DP-HSRIC-FNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHTSS--SC-CHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHH-----HHHHHHHHHc--CC-ChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 345778888888888764 6888888885 44 66788 578899999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----------------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNY----------------QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~----------------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+|.++..+| ++++|+.++++++++.|.+. .+|+++|.++..+|++++|+..+++++.++|++.
T Consensus 77 lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 77 RGMLYYQTE-KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHcc-cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999988 48999999999999888877 8899999999999999999999999999999877
Q ss_pred HHhHHHH
Q psy4772 211 HAWQHRQ 217 (235)
Q Consensus 211 ~aw~~r~ 217 (235)
......+
T Consensus 156 ~~~~~~a 162 (213)
T 1hh8_A 156 HSKIDKA 162 (213)
T ss_dssp GGHHHHH
T ss_pred cchHHHH
Confidence 6655444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-19 Score=159.73 Aligned_cols=149 Identities=10% Similarity=0.025 Sum_probs=134.6
Q ss_pred hhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---------------C
Q psy4772 42 YSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---------------E 106 (235)
Q Consensus 42 y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---------------~ 106 (235)
|...++.|++|+..+++++..+|.++.+|.++|.+++..|+|. +|+..|.++|+++|.+ .
T Consensus 243 y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~-----~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 243 YEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYM-----QAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred EEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 3334567789999999999999999999999999999999875 7999999999999999 4
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+| +++|.++..+|++++|+.+|+++|+++|+++.+|+++|.++..++ ++++|+.+|+++++++|++..+|..++.++
T Consensus 318 ~~~-~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAF-LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN-EFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888 689999999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHcCCchHHHH
Q psy4772 187 EWMGEPDEELA 197 (235)
Q Consensus 187 ~~l~~~~~Al~ 197 (235)
..++++.++..
T Consensus 396 ~~~~~~~~a~~ 406 (457)
T 1kt0_A 396 KKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887663
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=128.55 Aligned_cols=125 Identities=11% Similarity=0.109 Sum_probs=81.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH-Hhccccc--
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAV-VNAGEKS-- 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i-l~~~~~~-- 123 (235)
+++++|+..++++++.+|.++.+|+.+|.++...|+++ +|+..|.++++++|.++.+| +.+|.+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS-----NSLLAYRQALQLRGENAELY-AALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHCSCHHHH-HHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCHHHH-HHHHHHHHHhcCCcch
Confidence 55667777777777777777777777777766666653 56666666666666666666 456666 5556666
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQV 178 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~a 178 (235)
++|+..+++++.++|.+..+|+.+|.++..+| ++++|+..++++++++|.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQA-NYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCccH
Confidence 66666666666666666666666666666666 3666666666666666666443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=143.18 Aligned_cols=173 Identities=13% Similarity=0.046 Sum_probs=151.0
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-------hhhHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-------PWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-------aw~~~ 112 (235)
.|++++|+.+|++|+++ .|..+.+++++|.++..+|+++ +|+..+.+++.+.++... ++ ..
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~-~~ 189 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTY-----FSMDYARQAYEIYKEHEAYNIRLLQCH-SL 189 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHTCSTTHHHHHHHH-HH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHhCccchHHHHHHH-HH
Confidence 47899999999999998 4446799999999999999875 799999999999777654 67 47
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCCh------HHHHHHHHHHHHhhHhHHHHHHHHHHHHH-----hC-CCChHHhH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANY------TVWQYRREILKALNKDLHQELKYIGEKIK-----EN-SKNYQVWR 180 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~------~aw~~r~~~l~~l~~~~eeal~~~~~al~-----~~-P~n~~aw~ 180 (235)
+|.++..+|++++|+..+++++.+.|+.. .+++++|.++..+| ++++|+.+++++++ .+ |....+++
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-QYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 99999999999999999999999876655 59999999999999 59999999999999 57 88899999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHh-----CCCChHHhHHHHHHHhhcCC
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQ-----DAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~l-----dp~n~~aw~~r~~~l~~l~~ 225 (235)
++|.++..+|++++|+.++++++.+ +|.....+..++.+....|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999998 55555555666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=136.32 Aligned_cols=144 Identities=9% Similarity=0.014 Sum_probs=104.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC----------------chh
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE----------------SPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~----------------~aw 109 (235)
.+.|+++.+.++......++.+..|..+|.++...|+++ +|+..|.+++.+.|.++ .+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEIN-----EAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 466788888888888888888888888888888888764 68888888888888887 666
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+.+|.++..+|++++|+.++++++.++|.+..+++.+|.++..+| ++++|+.+++++++++|.+..++..++.++..+
T Consensus 92 -~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 -LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-FLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777777777777777 477777777777777777777777777777666
Q ss_pred CCchHHH
Q psy4772 190 GEPDEEL 196 (235)
Q Consensus 190 ~~~~~Al 196 (235)
++..++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 5544433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=127.72 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=109.6
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+++++++++|.+.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 79 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYS-----KAIDLYTQALSIAPANPIYL-SNRAAAYSASGQHEKAAEDAELATVVDPKYS 79 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCcCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 45678899999999999999875 79999999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
.+|+++|.++..+| ++++|+.+++++++++|++..+|+.++....
T Consensus 80 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 80 KAWSRLGLARFDMA-DYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999 5999999999999999999999998887653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=118.80 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 103 PKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 103 p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
|.+..+| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..++ ++++|+.+++++++.+|.+..+|+.+
T Consensus 13 ~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMV-KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-EFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHH-HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 3444455 355555555666666666666666666666666666666665555 35666666666666666666666666
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 183 QIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 183 ~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
|.++...|++++|+.++++++.++|.+..+|..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666555554433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-18 Score=147.18 Aligned_cols=180 Identities=8% Similarity=0.032 Sum_probs=161.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCch----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~g~ 115 (235)
.|++++|+.+|+++++++|+++ .+|..+|.++..+|+++ +|+..+.+++.+ .|....+| +.+|.
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~ 134 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYN-----KAMQYHKHDLTLAKSMNDRLGEAKSS-GNLGN 134 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHccCchHHHHHH-HHHHH
Confidence 4789999999999999999987 68999999999999875 799999999998 68888899 58999
Q ss_pred HHhcccccHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHhhHh-----------------HHHHHHHHHHHHHhC
Q psy4772 116 VVNAGEKSERALALTADAITM------NPANYTVWQYRREILKALNKD-----------------LHQELKYIGEKIKEN 172 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l------~P~~~~aw~~r~~~l~~l~~~-----------------~eeal~~~~~al~~~ 172 (235)
++...|++++|+..+++++.+ .|....++..+|.++..+| + +++|+.++++++++.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7788889999999999999 7 899999999998864
Q ss_pred ------CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH------HhHHHHHHHhhcCCccccccc
Q psy4772 173 ------SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH------AWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 173 ------P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~------aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|....+|..+|.++...|++++|+.++++++.+.|.+.. ++.++|.++..+|+..++.-.
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 444569999999999999999999999999999887666 899999999999988776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=145.56 Aligned_cols=170 Identities=9% Similarity=-0.019 Sum_probs=151.6
Q ss_pred HHHHHHHhHHh-cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-chhhHHHHHHHhcccccHHHHH
Q psy4772 51 DELSYIEGLIS-HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-SPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 51 ~Al~~~~~aL~-~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-~aw~~~~g~il~~~~~~~eAl~ 128 (235)
+|+..|++|++ ++|+++.+|..+|.++...|+++ +|...|.++++++|.++ .+| ...|.++...|++++|+.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYE-----KVHSIYNRLLAIEDIDPTLVY-IQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHSSSSCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH-----HHHHHHHHHhCccccCchHHH-HHHHHHHHHhcCHHHHHH
Confidence 89999999997 89999999999999999999764 79999999999999986 589 578899999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 129 LTADAITMNPANYTVWQYRREIL-KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 129 ~~~~al~l~P~~~~aw~~r~~~l-~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
.|+++++..|..+..+...+.+. ...| +.++|...|+++++.+|+++.+|.+.+.++...|+.++|..+|++++...|
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99999999999988888777663 3577 589999999999999999999999999999999999999999999999987
Q ss_pred CChH----HhHHHHHHHhhcCCcc
Q psy4772 208 KNYH----AWQHRQWVINLLDDDD 227 (235)
Q Consensus 208 ~n~~----aw~~r~~~l~~l~~~~ 227 (235)
.++. .|..........|+..
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHH
Confidence 7665 8877666666667543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=121.67 Aligned_cols=133 Identities=13% Similarity=0.053 Sum_probs=118.4
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+..|..+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+..+++++.++|.++.+|+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 85 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYE-----NAIKFYSQAIELNPSNAIYY-GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 4577899999999998874 79999999999999999999 58999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH--HHHcCCchHHHHHHHHHHHh
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII--VEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~--l~~l~~~~~Al~~~~~ai~l 205 (235)
.+|.++..+| ++++|+.+++++++++|.+..+|..++.+ +...|++++|+..+.++..+
T Consensus 86 ~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 86 RRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999 59999999999999999999999665555 77889999999998887664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=127.76 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHhhHhH--HHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI-LKALNKDL--HQELKYI 165 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~-l~~l~~~~--eeal~~~ 165 (235)
++|+..+.+++..+|.++.+| +.+|.++...|++++|+.++++++.++|.++.+|..+|.+ +...| .+ ++|+.++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~~~A~~~~ 104 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQW-ALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMTAQTRAMI 104 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 368999999999999999999 6899999999999999999999999999999999999999 77888 48 9999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+++++++|.+..+|+.+|.++...|++++|+..+++++.++|.+...+.-...+
T Consensus 105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999997766544433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=144.92 Aligned_cols=180 Identities=7% Similarity=0.056 Sum_probs=150.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~g~ 115 (235)
.|++++|+.+|+++++..|++ +.+|..+|.++...|+++ +|+..+.+++.+ .|....++ ..+|.
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~la~ 95 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA-----KALEYHHHDLTLARTIGDQLGEAKAS-GNLGN 95 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHH
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHhccccHHHHHHH-HHHHH
Confidence 478999999999999999998 468899999999998874 688888888887 45556677 57889
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHh--------------------HHHHHHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADAITMNPAN------YTVWQYRREILKALNKD--------------------LHQELKYIGEKI 169 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~--------------------~eeal~~~~~al 169 (235)
++...|++++|+..+++++.+.|.. ..++..+|.++..+| + +++|+..+++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887765 448889999999988 6 899999999988
Q ss_pred Hh------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH------HhHHHHHHHhhcCCccccccc
Q psy4772 170 KE------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH------AWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 170 ~~------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~------aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++ .|....++..+|.++...|++++|+.++++++.+.|+... ++.++|.++..+|+..++.-.
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 87 4555668899999999999999999999999988777665 888899988888887766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=116.77 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=74.9
Q ss_pred CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 104 KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 104 ~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
.++.+| +.+|.++...|++++|+..+++++.++|.+..+|..+|.++..+| ++++|+.+++++++.+|.++.+|+.+|
T Consensus 10 ~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERL-KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-NYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-chHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 334444 355666666666666666666666666666666666666666666 366666666666666666666666666
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 184 IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.++...|++++|+.++++++.++|.+..+|..++.++..+|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666655554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=116.87 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=113.6
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
..|..+.+|+.+|.++...|+++ +|+..|.+++.++|.+..+| +.+|.++...|++++|+.++++++.++|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 84 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYP-----QAMKHYTEAIKRNPKDAKLY-SNRAACYTKLLEFQLALKDCEECIQLEPTFI 84 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSH-----HHHHHHHHHHTTCTTCHHHH-HHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence 35778899999999999999885 79999999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
.+|+.+|.++..+| ++++|+.+++++++.+|.+..+|..++.++...|+
T Consensus 85 ~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 85 KGYTRKAAALEAMK-DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999 59999999999999999999999999999887764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=116.76 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=117.3
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA 139 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~ 139 (235)
...+|.++.+|..+|.++...|+++ +|+..+.+++.++|.++.+| +.+|.++...|++++|+.++++++.++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFE-----AAVHFYGKAIELNPANAVYF-CNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhcchhhhHHHHHHHHHHHHccCHH-----HHHHHHHHHHHcCCCCHHHH-HHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 3567888999999999999999874 79999999999999999999 68999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCc
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~ 192 (235)
++.+|+.+|.++..+| ++++|+.+++++++.+|.+..+|..++.++..+|++
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 YSKAYGRMGLALSSLN-KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999 599999999999999999999999999999998875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-18 Score=143.82 Aligned_cols=177 Identities=10% Similarity=-0.057 Sum_probs=143.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhH-------HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHH------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQR-------YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYL------ 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~-------g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~------ 112 (235)
-+++..|+..|.++++++|+.+++|..+ +.++..++++. +++..+.+++.+.|....+| +.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~-----~a~~~~~~~l~l~p~~l~a~-~~~~g~y~ 92 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSR-----RNFGQLSGSVQISMSTLNAR-IAIGGLYG 92 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTG-----GGTTHHHHTTTCCGGGGCCE-EECCTTTC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHH-----HHHHHHHHHhcCChhhhhhh-hccCCccc
Confidence 3678999999999999999999999999 89999988775 57788889999999988888 55
Q ss_pred ---------------HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCC-
Q psy4772 113 ---------------RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKN- 175 (235)
Q Consensus 113 ---------------~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n- 175 (235)
.+.++...|++++|.+.++.++...|+.. +++.++.++.+.+ +|++++..++++++.. |..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE-RWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT-CHHHHHHHHTTGGGCSCHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC-CHHHHHHHHHHhhccCCcccH
Confidence 33667788899999999998888888888 8888888888888 4888888888776642 221
Q ss_pred hHHhHHHHHHHHHcCCchHHHHHHHHHHHhC--CC-ChHHhHHHHHHHhhcCCccccc
Q psy4772 176 YQVWRHRQIIVEWMGEPDEELALTAAILAQD--AK-NYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 176 ~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld--p~-n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
..+++++|.++..+|++++|+.+|++++... |. ...+++++|.++..+|+.++|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 2478888888888888888888888887544 55 5568888888888888877664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=132.90 Aligned_cols=160 Identities=7% Similarity=-0.035 Sum_probs=121.7
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh--
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY-- 141 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~-- 141 (235)
|..+..+.+-+.+...+|.++ +|.+.+.......+.....| ..+|.++...|++++|+..|++++.+.|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 1 MGSSHHHHHHSSGRENLYFQG-----AKKSIYDYTDEEKVQSAFDI-KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp --------------------------CCCSGGGCCHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred CCCcccccchhhhhhhhhhcc-----ccCchhhCCHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 344566677777777777765 34444554455555566677 5899999999999999999999999999998
Q ss_pred --------------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 142 --------------TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 142 --------------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
.+|+++|.++..+| ++++|+.+++++++++|.+..+|+.+|.++..+|++++|+..+++++.++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNK-DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 89999999999999 599999999999999999999999999999999999999999999999999
Q ss_pred CChHHhHHHHHHHhhcCCccccc
Q psy4772 208 KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 208 ~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.+..++..++.++..+++..++.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777665544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=138.25 Aligned_cols=179 Identities=7% Similarity=0.054 Sum_probs=141.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~g~ 115 (235)
.|++++|+.+|+++++.+|++ ..++..+|.++...|+++ +|+..+.+++.+ .|....+| ..+|.
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~ 91 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA-----KALEYHHHDLTLARTIGDQLGEAKAS-GNLGN 91 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHH
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHhhcccccHHHHHHH-HHHHH
Confidence 478889999999999988888 467888888888888764 688888888777 55556677 46888
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCChH------HHHHHHHHHHHhhHh--------------------HHHHHHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADAITMNPANYT------VWQYRREILKALNKD--------------------LHQELKYIGEKI 169 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~~~------aw~~r~~~l~~l~~~--------------------~eeal~~~~~al 169 (235)
++...|++++|+..+++++++.|.... ++..+|.++..+| + +++|+..+++++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 888888888888888888887766543 8888888888888 6 788888888887
Q ss_pred Hh------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH------HhHHHHHHHhhcCCcccccc
Q psy4772 170 KE------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH------AWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 170 ~~------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~------aw~~r~~~l~~l~~~~~~~~ 231 (235)
.. .|....++..+|.++...|++++|+..+++++.+.|.... ++.++|.++..+|+.+++.-
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76 3444568888888888888888888888888887666544 78888888888887766543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-17 Score=128.57 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=101.1
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC-------Cc-----hhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN-------ES-----PWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~-------~~-----aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
.+..|.++|.++...|+|+ +|+..|+++|+++|++ .. +| +++|.++..+|++++|+.+|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~e-----eAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~-~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYD-----EAAANCRRAMEISHTMPPEEAFDHAGFDAFCH-AGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCCCCcchhhhhhccchHHHH-HHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567889999999999875 7999999999999994 33 99 58999999999999999999999
Q ss_pred HHc-------CCCChHHH----HHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 134 ITM-------NPANYTVW----QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 134 l~l-------~P~~~~aw----~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
|++ +|+++.+| ++||.++..+|+ +++|+.+|+++|+++|.+..+...+..+.
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999 99999999 999999999995 99999999999999999877766555444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=122.46 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=99.2
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHc------------------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITM------------------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l------------------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..+|..+...|++++|+..|+++|.+ +|.+..+|+++|.++..+| ++++|+.+++++|+++
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-DLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcC
Confidence 45788888888888888888888888 7888899999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh-HHhHHHHHHHhhcCC
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY-HAWQHRQWVINLLDD 225 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~-~aw~~r~~~l~~l~~ 225 (235)
|.++.+|+.+|.++..+|++++|+..+++++.++|++. .....++.+...++.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 667777777655443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=131.69 Aligned_cols=153 Identities=8% Similarity=0.084 Sum_probs=140.3
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw 109 (235)
.|++++|+.++++++++ +|..+.++.++|.++..+|+++ +|+..|.+++.+ +|....++
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-----EAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 58899999999999988 5888999999999999999875 799999999998 57778888
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh----------
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKE---------- 171 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~---------- 171 (235)
+.+|.++...|++++|+..+++++.+ .|....++..+|.++..+| ++++|+.++++++++
T Consensus 131 -~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 131 -NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG-KYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999999 8888999999999999999 599999999999986
Q ss_pred ---------------------------------------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 172 ---------------------------------------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 172 ---------------------------------------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.|....++..+|.++...|++++|+.++++++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566678999999999999999999999999975
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-17 Score=141.89 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=131.7
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~ 113 (235)
.|++++|+.++++++.+ .|..+.++..+|.++..+|+++ +|+..+.+++.+.|.... ++ ..+
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l 133 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD-----EAIVCCQRHLDISRELNDKVGEARAL-YNL 133 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHhcccccchHHHH-HHH
Confidence 47788888888888877 5666788888888888888764 677777777777766544 66 467
Q ss_pred HHHHhcccc--------------------cHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 114 GAVVNAGEK--------------------SERALALTADAITM------NPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 114 g~il~~~~~--------------------~~eAl~~~~~al~l------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
|.++...|+ +++|+..+.+++.+ .|....++.++|.++..+| ++++|+.++++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 212 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-BHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHH
Confidence 777777777 77777777777776 4455567777777777777 47777777777
Q ss_pred HHHhCCCChH------HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHhHHHHHHHhhcCCcccccc
Q psy4772 168 KIKENSKNYQ------VWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 168 al~~~P~n~~------aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++++.|+... ++.++|.++...|++++|+.++++++.+.|.. ..++..+|.++..+|+..+|.-
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 7777665544 77777777777777777777777777777666 6677777777777777665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=116.04 Aligned_cols=118 Identities=14% Similarity=0.029 Sum_probs=86.1
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.+|.++.+| +.+|.++...|++++|+..+++++.++|.++.+|+.+|.++..+| ++++|+.+++++++++|.++.+|+
T Consensus 4 ~~~~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 4 MKSPSAQEL-KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-QPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp --CCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CccccHHHH-HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCchhHHHHH
Confidence 456666677 567777777777777777777777777777777777777777777 477777777777777777777777
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCC-----ChHHhHHHHHHH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAK-----NYHAWQHRQWVI 220 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~-----n~~aw~~r~~~l 220 (235)
.+|.++..+|++++|+..+++++.++|+ +...+..++.+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777 556655555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=118.38 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=65.2
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.+|.++...|++++|+..++++++++|+++.+|+.+|.++..+| ++++|+.+++++++++|.+..+|+.+|.++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 456666666677777777777777777777777777777777776 3677777777777777777777777777777777
Q ss_pred CchHHHHHHHHHHHhCCCCh
Q psy4772 191 EPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~ 210 (235)
++++|+..++++++++|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=109.46 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=91.0
Q ss_pred CCCC-CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 102 APKN-ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 102 ~p~~-~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
+|.. ..+| +.+|.++...|++++|+..+++++..+|.+..+|+.++.++...| ++++|+.+++++++.+|.+..+|+
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp ---CHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CccccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHH
Confidence 4444 4566 467777777788888888888888888888888888888888777 478888888888888888888888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
.++.++...|++++|+..+++++.++|.+..++..++.++...
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888887777776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=133.97 Aligned_cols=156 Identities=9% Similarity=0.099 Sum_probs=141.9
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC--------CCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA--------PKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~--------p~~~~aw 109 (235)
.|++++|+.++++++.+ .|....++..+|.++..+|+++ +|+..+.+++.+. |....+|
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-----EAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH-----HHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 47899999999999988 5788999999999999999875 7999999999884 6666788
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh----------
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKE---------- 171 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~---------- 171 (235)
..+|.++...|++++|+.++++++.+ +|....++..++.++..+| ++++|+.++++++++
T Consensus 157 -~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 157 -NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG-KFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57999999999999999999999998 8888999999999999999 599999999999984
Q ss_pred ---------------------------------------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 172 ---------------------------------------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 172 ---------------------------------------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|.+..+|..+|.++...|++++|+.++++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 5777889999999999999999999999999999886
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-16 Score=109.74 Aligned_cols=108 Identities=17% Similarity=0.303 Sum_probs=98.2
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHH
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQV 178 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~a 178 (235)
++|.++.+| +.+|.++...|++++|+..++++++++|.+..+|..+|.++..+| ++++|+.+++++++.+|. +..+
T Consensus 1 l~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEY-YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE-RYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGG-GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCcccchHHH
Confidence 478888898 578999999999999999999999999999999999999999999 489999999999999999 9999
Q ss_pred hHHHHHHHHHc-CCchHHHHHHHHHHHhCCCCh
Q psy4772 179 WRHRQIIVEWM-GEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 179 w~~r~~~l~~l-~~~~~Al~~~~~ai~ldp~n~ 210 (235)
|+.+|.++..+ |++++|++++++++..+|.+.
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999999 999999999999999998764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=116.99 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=89.5
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
...++.+|.++...|+++ +|+..|.++++++|+++.+| +.+|.++...|++++|+.+++++++++|++..+|..
T Consensus 17 ~~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLA-----EAALAFEAVCQKEPEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CSCHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 356788999999998874 79999999999999999999 689999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+|.++..+|+ +++|+..++++++++|.+..
T Consensus 91 la~~~~~~g~-~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 91 LAVSHTNEHN-ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHC-------
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCcCCCC
Confidence 9999999995 99999999999999998754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-17 Score=142.63 Aligned_cols=179 Identities=11% Similarity=0.083 Sum_probs=148.3
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~ 113 (235)
.|++++|+.++++++++ .|..+.++..+|.++..+|+++ +|+..+.+++.+ .|....++ ..+
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l 172 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD-----EAAICCERHLTLARQLGDRLSEGRAL-YNL 172 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHhhchHHHHHHH-HHH
Confidence 47899999999999998 7888999999999999999875 688888888888 56666677 578
Q ss_pred HHHHhcccc-----------------cHHHHHHHHHHHHcC------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 114 GAVVNAGEK-----------------SERALALTADAITMN------PANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 114 g~il~~~~~-----------------~~eAl~~~~~al~l~------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
|.++...|+ +++|+..+++++++. |....++..+|.++..+| ++++|+.+++++++
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG-DFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 888888888 888888888888764 444568888888888888 48899999999888
Q ss_pred hCCCChH------HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHhHHHHHHHhhcCCcccccc
Q psy4772 171 ENSKNYQ------VWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 171 ~~P~n~~------aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+.|.... ++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++..+|+..++.-
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8776554 88888888888999999999999988888765 6788888888888888766654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=134.60 Aligned_cols=161 Identities=6% Similarity=-0.009 Sum_probs=140.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCc------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~ 113 (235)
.+++++|+.+|.+++.+.+.. +.++.++|.++..+|+++ +|+..|.+++.+.+.. ..++ ..+
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~~~~g~~~~~a~~~-~~l 122 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP-----EAVQYIEKASVMYVENGTPDTAAMAL-DRA 122 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-----GGHHHHHHHHHHHHTTTCHHHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH-HHH
Confidence 478999999999999998754 678999999999999986 6899999999986543 3466 478
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------HHhHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY------QVWRH 181 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------~aw~~ 181 (235)
|.++.. |++++|+.+|++++.+.|.. ..+++++|.++..+| ++++|+.++++++++.|.+. .++..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-KFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 999998 99999999999999998865 678999999999999 59999999999999987663 48888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+|.++..+|++++|+.++++++ ++|.+..+...
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 9999999999999999999999 99988765433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=116.73 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=76.5
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-------HHhHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-------QVWRHRQ 183 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-------~aw~~r~ 183 (235)
..+|.++...|++++|+.+|+++|+++|+++.+|+++|.++..+| ++++|+.+++++|+++|++. .+++.+|
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh-hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 357777777888888888888888888888888888888888887 47888888888888777664 3677778
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 184 IIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
.++..+|++++|+++|++++..+|+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8888888888888888888888775
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=112.61 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=92.9
Q ss_pred HhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 100 QIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 100 ~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
..+|.+...| +.+|.++...|++++|+..++++++++|.+ ..+|..++.++..++ ++++|+.+++++++++|.+.
T Consensus 22 ~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQL-RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHH-HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCH
Confidence 3456666677 467777777788888888888888888876 777888888888887 47888888888888888888
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
.+|+.+|.++..+|++++|+.++++++.++|++..+|..++.+..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 888888888888888888888888888888888887777666653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-16 Score=121.50 Aligned_cols=88 Identities=9% Similarity=0.148 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc----------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS----------ERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~----------~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
.+++|+..+.++++++|+++.+| +++|.++...+++ ++|+.+|+++|+++|++..+|+++|.+|..+|.
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~-~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNL-TRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 45666666677777777777766 4566666666543 366666666666666666666666666666541
Q ss_pred ----------hHHHHHHHHHHHHHhCCCC
Q psy4772 157 ----------DLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 157 ----------~~eeal~~~~~al~~~P~n 175 (235)
++++|+.+|++|++++|++
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 2555555555555555554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=134.37 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=142.0
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~ 113 (235)
.|++++|+.++++++.+ .|..+.++..+|.++..+|+++ +|+..+.+++.+.|.... ++ ..+
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l 129 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD-----EAIVCCQRHLDISRELNDKVGEARAL-YNL 129 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHHHHHhcCchHHHHHH-HHH
Confidence 47889999999999888 6677888999999999988874 688888888888777655 67 467
Q ss_pred HHHHhcccc--------------------cHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 114 GAVVNAGEK--------------------SERALALTADAITM------NPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 114 g~il~~~~~--------------------~~eAl~~~~~al~l------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
|.++...|+ +++|+..+++++.+ .|....++..+|.++..+| ++++|+.++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 208 (338)
T 3ro2_A 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 888888888 88888888888776 4555667888888888888 48888888888
Q ss_pred HHHhCCCChH------HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHhHHHHHHHhhcCCcccccc
Q psy4772 168 KIKENSKNYQ------VWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 168 al~~~P~n~~------aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++++.|.... ++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++..+|+..++.-
T Consensus 209 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8877665443 88888888888888888888888888877766 6777888888877777766543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=122.82 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=91.2
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN 118 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~ 118 (235)
.+++.|++|+..++++++++|+++++|+++|.++..++++.. +.+++|+..|+++|+++|++..+| +++|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~-~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV-WCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHH-HHHHHHHH
Confidence 457889999999999999999999999999999999988753 247799999999999999999999 68999999
Q ss_pred ccc-----------ccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 119 AGE-----------KSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 119 ~~~-----------~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
.+| ++++|+.+|++||+++|++...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 875 8999999999999999998644433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=107.62 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=92.8
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+| +.+|.++...|++++|+..+++++..+|.++.+|..+|.++..+| ++++|+..++++++.+|.++.+|+.+|.++
T Consensus 5 ~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NEL-KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345 467888888888888888888888888888888888888888888 488888888888888888888888888888
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
...|++++|+..+++++.++|.+..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888888888888888888888888888777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=116.00 Aligned_cols=122 Identities=7% Similarity=0.007 Sum_probs=109.0
Q ss_pred hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
..+|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+..++++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYP-----EAAACYGRAITRNPLVAVYY-TNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCccccHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHhhCcCcHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 467889999999999999999875 79999999999999999999 689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-----ChHHhHHHHHHHHHc
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSK-----NYQVWRHRQIIVEWM 189 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~-----n~~aw~~r~~~l~~l 189 (235)
+.+|+.+|.++..+| ++++|+.+++++++++|+ +..++..+..+..+.
T Consensus 77 ~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 77 VKAHFFLGQCQLEME-SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 599999999999999998 677777666665443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=120.88 Aligned_cols=129 Identities=10% Similarity=0.029 Sum_probs=117.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|++++ +| ++.+|+++|.++..+|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++
T Consensus 19 ~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~-~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMT-----EAEKAFTRSINRDKHLAVAY-FQRGMLYYQTEKYDL 89 (213)
T ss_dssp TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCccchHHH-HHHHHHHHHcccHHH
Confidence 478999999999996 44 7899999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCCh----------------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 126 ALALTADAITMNPANY----------------TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQI 184 (235)
Q Consensus 126 Al~~~~~al~l~P~~~----------------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~ 184 (235)
|+..+++++++.|++. .+|+++|.++..+| ++++|+.+++++++++|.+.......+.
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~ 163 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSMKSEPRHSKIDKAM 163 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCcccccchHHHHH
Confidence 9999999999998887 99999999999999 5999999999999999998665544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-17 Score=151.27 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=114.4
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
|+.+.+|..+|.++...|+++ +|++.|.++++++|.+..+| +.+|.++..+|++++|+..++++++++|+++.+
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~Al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYE-----NAIKFYSQAIELNPSNAIYY-GNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHhCCccHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 345667778888888777764 68888888888888888888 578888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH--HHHcCCchHHHHHHH-----------HHHHhCCCCh
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII--VEWMGEPDEELALTA-----------AILAQDAKNY 210 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~--l~~l~~~~~Al~~~~-----------~ai~ldp~n~ 210 (235)
|+++|.++..+| ++++|+..++++++++|++..+|..++.+ +...|++++|++.++ +++.++|++.
T Consensus 77 ~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 77 YYRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 888888888888 48888888888888888888888888888 777788888888888 8888888776
Q ss_pred HHhHH
Q psy4772 211 HAWQH 215 (235)
Q Consensus 211 ~aw~~ 215 (235)
.++..
T Consensus 156 ~~~~~ 160 (477)
T 1wao_1 156 GPKLE 160 (477)
T ss_dssp SCCCG
T ss_pred ccccc
Confidence 65544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-17 Score=136.65 Aligned_cols=163 Identities=9% Similarity=0.090 Sum_probs=127.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++|+.+|.++.+|+++|.++..+|+++ +|+..+.++++++|+++.+| +.+|.++..+|++++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE-----QALADCRRALELDGQSVKAH-FFLGQCQLEMESYDE 90 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHTTSCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 478899999999999999999999999999999888764 78889999999999999888 578899999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..++++++++|++...+....+.... ..++...........|.+.....+++.++ .|++++|++.+++|+++
T Consensus 91 A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 91 AIANLQRAYSLAKEQRLNFGDDIPSALR----IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEG 164 (281)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSHHHHHHH----HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTT
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 9999999999888775443322222222 23333444445567888888888887776 68899999999999999
Q ss_pred CCCChHHhHHHHHHH
Q psy4772 206 DAKNYHAWQHRQWVI 220 (235)
Q Consensus 206 dp~n~~aw~~r~~~l 220 (235)
+|.+.......+.+.
T Consensus 165 ~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 165 HEDDGHIRAQQACIE 179 (281)
T ss_dssp TSCHHHHTHHHHHHH
T ss_pred ccchhhhhhHHHHHH
Confidence 999887766665544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=109.42 Aligned_cols=123 Identities=14% Similarity=0.366 Sum_probs=116.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.+|..+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++
T Consensus 14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD-----EAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDE 87 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHTTTCHHH
T ss_pred cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHCCCchHHH-HHHHHHHHHhcCHHH
Confidence 578999999999999999999999999999999998764 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
|+..+++++..+|.+..+|..++.++...| ++++|+.+++++++.+|.+
T Consensus 88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHc-cHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999 5999999999999999974
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=116.34 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=93.5
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh--
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY-- 141 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~-- 141 (235)
++.+.++.++|.+++..|+|+ +|+..|.++|+++|+++.+| +++|.++..+|++++|+..++++|+++|++.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~-----~A~~~y~~Al~~~p~~~~~~-~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFE-----KAHVHYDKAIELDPSNITFY-NNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 455678999999999999875 79999999999999999999 5899999999999999999999999999875
Q ss_pred -----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 142 -----TVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 142 -----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.+++.+|.++..++ ++++|+.+|+++++.+|+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQN-DLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcC
Confidence 47778888888888 599999999999999885
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-17 Score=141.29 Aligned_cols=152 Identities=7% Similarity=-0.017 Sum_probs=99.1
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-----------------chhhHHHHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-----------------SPWNYLRGA 115 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-----------------~aw~~~~g~ 115 (235)
...++..+...|..+..|..+|.++...|+|. +|+..|.+++.++|.+. .+| +++|.
T Consensus 165 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~-----~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~-~nla~ 238 (338)
T 2if4_A 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLE-----EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH-LNIAA 238 (338)
T ss_dssp BTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCH-----HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHH-HHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHH-HHHHH
Confidence 34455555666778889999999999999985 79999999999999987 378 57999
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH-HcCCchH
Q psy4772 116 VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE-WMGEPDE 194 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~-~l~~~~~ 194 (235)
++..+|++++|+..++++|+++|++..+|+++|.++..+| ++++|+.+++++++++|.+..++..++.+.. ..+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 4999999999999999999999999998854 4556788
Q ss_pred HHHHHHHHHHhCCCChH
Q psy4772 195 ELALTAAILAQDAKNYH 211 (235)
Q Consensus 195 Al~~~~~ai~ldp~n~~ 211 (235)
+...|.+++.++|.+..
T Consensus 318 a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHhhCCCCCCCC
Confidence 88999999999998764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=107.61 Aligned_cols=122 Identities=16% Similarity=0.321 Sum_probs=110.2
Q ss_pred cCCCc-hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 62 HDVRN-NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 62 ~~P~~-~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
.+|.. +.+|+.+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++|+..+++++.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYD-----EAIEYYQKALELDPNNAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCccccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCcCcHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 46666 789999999999999874 79999999999999999999 589999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
..+|..++.++..+| ++++|+..++++++.+|.+..++..++.++...|
T Consensus 77 ~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 AEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999 5999999999999999999999999999887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=131.19 Aligned_cols=155 Identities=8% Similarity=-0.019 Sum_probs=137.1
Q ss_pred hhcHHHHHHHHHhHHhcC------CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-------chhhHH
Q psy4772 46 CNLFSDELSYIEGLISHD------VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-------SPWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~------P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-------~aw~~~ 112 (235)
.|++++|+.+|++|+++. |..+.+++++|.++..+|++. +|+..+.+++.+.++.. .++ +.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~-~~ 187 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTH-----VSMYHILQALDIYQNHPLYSIRTIQSL-FV 187 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHTSTTCHHHHHHHH-HH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHHhCCCchhhHHHHH-HH
Confidence 478999999999999884 346789999999999999875 79999999999876543 356 47
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCC------CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-----hCCCChHHhHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNP------ANYTVWQYRREILKALNKDLHQELKYIGEKIK-----ENSKNYQVWRH 181 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P------~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~-----~~P~n~~aw~~ 181 (235)
+|.++...|++++|+..+++++.+.+ ....+++++|.++..+| ++++|+.+++++++ .+|....++++
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 89999999999999999999999743 23468999999999999 59999999999999 89999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
+|.++..+|++++|+.++++++.+.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999844
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=113.64 Aligned_cols=122 Identities=15% Similarity=0.068 Sum_probs=110.3
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
..| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..+| ++++|+.+++++++.+|.++.+|+.+|.++
T Consensus 14 ~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EEL-KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345 578999999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH--HhhcCCccccc
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHAWQHRQWV--INLLDDDDRGV 230 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~--l~~l~~~~~~~ 230 (235)
..+|++++|+.++++++.++|.+..+|.+.+.+ +...|+..++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999776666 44445554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=106.25 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=106.2
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+..+++++.++|.+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNID-----DALQCYSEAIKLDPHNHVLY-SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHHCCCcHHHH-HHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence 4678999999999999874 79999999999999999999 58999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
.+|.++..+| ++++|+.+++++++.+|.+..+|..++.+..
T Consensus 77 ~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 77 RKAAALEFLN-RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999 5999999999999999999999998887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=122.22 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=105.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----cc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GE 121 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~ 121 (235)
.+++++|+.+|+++++. .++.+++++|.++.. +- .+..+++|+..|.+++ ++.++.++ +.+|.++.. .+
T Consensus 31 ~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g-~~~~~~~A~~~~~~A~--~~g~~~a~-~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP-QQADYPQARQLAEKAV--EAGSKSGE-IVLARVLVNRQAGAT 103 (212)
T ss_dssp HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST-TSCCHHHHHHHHHHHH--HTTCHHHH-HHHHHHHTCGGGSSC
T ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC-CCCCHHHHHHHHHHHH--HCCCHHHH-HHHHHHHHcCCCCcc
Confidence 35677777777777654 577777777777776 31 1123457777777774 35677777 567777766 56
Q ss_pred ccHHHHHHHHHHHHcCC--CChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-C----
Q psy4772 122 KSERALALTADAITMNP--ANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM-G---- 190 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P--~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l-~---- 190 (235)
++++|+.+++++++..| .++.+++++|.++.. .+ ++++|+.+++++++. |.++.+++++|.++..- |
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~ 181 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIE 181 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBC
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCC
Confidence 77777777777777777 357777777777777 44 477777777777777 66677777777777553 3
Q ss_pred -CchHHHHHHHHHHHhCC
Q psy4772 191 -EPDEELALTAAILAQDA 207 (235)
Q Consensus 191 -~~~~Al~~~~~ai~ldp 207 (235)
++++|+.++++|++..+
T Consensus 182 ~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 182 PNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 67777777777777643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=119.45 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=98.9
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------------------CCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------------------APKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------------------~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
.+..+..+|.+++..|+|. +|+..|.++|.+ +|.+..+| +++|.++..+|++++|+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~-----~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYK-----EAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY-ANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHH-HHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHH
Confidence 4567888888888888774 688888888888 77777888 57899999999999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-HHhHHHHHHHHHcC
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-QVWRHRQIIVEWMG 190 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-~aw~~r~~~l~~l~ 190 (235)
..++++|+++|.++.+|+.+|.++..+| ++++|+.+++++++++|.+. .+...++.+...++
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAW-KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHh-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 48999999999999999988 56666666665544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=112.33 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=109.6
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHHc
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAITM 136 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~l 136 (235)
...+|.++..|+.+|.++...|+++ +|+..|.++++++|++ ..+| +.+|.++...|++++|+..+++++.+
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYG-----GALAAYTQALGLDATPQDQAVLH-RNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHH-----HHHHHHHHHHTSCCCHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHcccchHHHHHH-HHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 3457888999999999999998874 7999999999999988 8888 68999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 137 NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+|.+..+|+.+|.++..+| ++++|+.+++++++++|.+..+|..++.+...
T Consensus 95 ~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLG-RLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999 59999999999999999999999888776543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=105.99 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=85.3
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC---hHHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANY---TVWQYRREILKALNKDLHQELKYIGEKIKENSKN---YQVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~---~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n---~~aw~~r~~ 184 (235)
+.+|.++...|++++|+..+++++..+|++. .+++.+|.++..+| ++++|+..++++++.+|++ +.+++.+|.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4677777777777888888888877777777 67777788877777 4788888888888888777 777788888
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
++..+|++++|+..+++++..+|++..+...+..+-.+.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 8888888888888888888888877777666665554433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=133.81 Aligned_cols=179 Identities=9% Similarity=-0.027 Sum_probs=153.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCc-------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN-------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~-------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~ 112 (235)
.|++++|+.++++|+++.++. +.++.++|.++..+|+++ +|+..|.+++.+.|+.. .++ ++
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~ 229 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE-----DAISHFQKAYSMAEAEKQPQLMGRTL-YN 229 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHcCChHHHHHHH-HH
Confidence 588999999999999995554 468999999999999875 79999999999988776 377 57
Q ss_pred HHHHHhcccccHHHHHHHHHHHH-----cC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-----CCCChHHhHH
Q psy4772 113 RGAVVNAGEKSERALALTADAIT-----MN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKE-----NSKNYQVWRH 181 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~-----l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-----~P~n~~aw~~ 181 (235)
+|.++..+|++++|+.++++++. .+ |..+.+++++|.++..+| ++++|+.++++++++ +|.....+..
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999 57 899999999999999999 599999999999998 4555556677
Q ss_pred HHHHHHHcCC---chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 182 RQIIVEWMGE---PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 182 r~~~l~~l~~---~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++.++...|+ +.+|+..++++ ...|....++..+|.++..+|+..+|.-.
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 361 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAY 361 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888998 78888888877 55566677888899999989988776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-16 Score=130.74 Aligned_cols=151 Identities=7% Similarity=-0.032 Sum_probs=121.2
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..++++++++|+++.+|+++|.++..+|+++ +|+..|.+++.++|+++..+. ....... +..
T Consensus 50 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~l~p~~~~~~~-~~~~~~~---~~~ 120 (281)
T 2c2l_A 50 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD-----EAIANLQRAYSLAKEQRLNFG-DDIPSAL---RIA 120 (281)
T ss_dssp HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCCCC-SHHHHHH---HHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCccchhhHH-HHHHHHH---HHH
Confidence 3589999999999999999999999999999999999874 799999999999998876542 1212211 333
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-CCchHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM-GEPDEELALTAAIL 203 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l-~~~~~Al~~~~~ai 203 (235)
++...........|....+..+++.++ .| .+++|+..++++++.+|.+......++.++... +.++++...|.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 121 KKKRWNSIEERRIHQESELHSYLTRLI--AA-ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHHHHHHH--HH-HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH--HH-HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555556678899999999988876 56 489999999999999999998888888777665 66888999999887
Q ss_pred HhCC
Q psy4772 204 AQDA 207 (235)
Q Consensus 204 ~ldp 207 (235)
+..+
T Consensus 198 ~~~~ 201 (281)
T 2c2l_A 198 EKRK 201 (281)
T ss_dssp CTTS
T ss_pred cccc
Confidence 7543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=106.57 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=101.9
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC--
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA-- 139 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~-- 139 (235)
++|.++.+|+.+|.++...|+++ +|+..+.++++++|.+..+| +.+|.++...|++++|+.+++++++++|.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYT-----ESIDLFEKAIQLDPEESKYW-LMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCCCcHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHhCcCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 47999999999999999999874 79999999999999999999 68999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCCh
Q psy4772 140 NYTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~ 176 (235)
+..+|..++.++..+ | ++++|+.++++++..+|.+.
T Consensus 75 ~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 75 NKDVWAAKADALRYIEG-KEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CHHHHHHHHHHHTTCSS-CSHHHHHHHHHHGGGCCCCC
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 9 49999999999999999864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=123.38 Aligned_cols=154 Identities=6% Similarity=-0.033 Sum_probs=130.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhH-----hh-hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSA-----WT-QRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a-----~~-~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~ 113 (235)
.+++++|+..+++++...|..+.. |+ .+|.++...|++ ++|+..+.+++.+.+.... ++ ..+
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~Ai~~~~~al~~~~~~~~~~~~~~~~-~~l 161 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY-----EYCILELKKLLNQQLTGIDVYQNLYIE-NAI 161 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCH-----HHHHHHHHHHHHTCCCCSCTTHHHHHH-HHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCH-----HHHHHHHHHHHHHhcccccHHHHHHHH-HHH
Confidence 478999999999999988887662 32 477777777665 4799999999998776665 57 479
Q ss_pred HHHHhcccccHHHHHHHHHHHH-------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hHHhH
Q psy4772 114 GAVVNAGEKSERALALTADAIT-------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQVWR 180 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~-------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~aw~ 180 (235)
|.++...|++++|+.+++++++ ..|....++++.|.++..+| ++++|+.++++++++.++. ..+++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999995 33445569999999999999 5999999999999987655 78999
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHHhC
Q psy4772 181 HRQIIVEWMGE-PDEELALTAAILAQD 206 (235)
Q Consensus 181 ~r~~~l~~l~~-~~~Al~~~~~ai~ld 206 (235)
++|.++..+|+ +++|++++++|+.+-
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999995 599999999998753
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-14 Score=121.07 Aligned_cols=153 Identities=7% Similarity=-0.071 Sum_probs=115.3
Q ss_pred hcHHHHHHHHHhHHhcCCCch------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNN------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLRG 114 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~g 114 (235)
++|++|+..+.++++..|... ..++.+|.++...|+++ +|+..+.+++.+.+.. ..++ +.+|
T Consensus 89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~lg 162 (293)
T 2qfc_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE-----YCILELKKLLNQQLTGIDVYQNLYIE-NAIA 162 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHH-----HHHHHHHHHHTTCCCSSCTTHHHHHH-HHHH
T ss_pred hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHHHhcCCchHHHHHHH-HHHH
Confidence 577888888888888877654 33566777777777664 6888888888776655 3356 4678
Q ss_pred HHHhcccccHHHHHHHHHHH---HcCCCCh----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hHHhHH
Q psy4772 115 AVVNAGEKSERALALTADAI---TMNPANY----TVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQVWRH 181 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al---~l~P~~~----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~aw~~ 181 (235)
.++...|++++|+.++++++ +..|... .+++++|.++..+| ++++|+.++++++++.++. ..++++
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~ 241 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 88888888888888888888 4556533 58888888888888 4888888888888776431 668888
Q ss_pred HHHHHHHcCCchHH-HHHHHHHHHhC
Q psy4772 182 RQIIVEWMGEPDEE-LALTAAILAQD 206 (235)
Q Consensus 182 r~~~l~~l~~~~~A-l~~~~~ai~ld 206 (235)
+|.++..+|++++| ..++++|+.+.
T Consensus 242 lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 242 RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88888888888888 67788887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=129.43 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=143.1
Q ss_pred hcHHHHHHHHHhHHhcCCCc-----------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chh
Q psy4772 47 NLFSDELSYIEGLISHDVRN-----------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPW 109 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~-----------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw 109 (235)
|++.+|..+++++.+..|.. ...+...|.++..+|+++ +|+..|.+++.+.++.. .++
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~a~~~ 79 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLE-----QAKDAYLQEAEAHANNRSLFHAAKAF 79 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45677777777777654421 123444567888888774 79999999999987653 466
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPA------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQ 177 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~ 177 (235)
..+|.++..+|++++|+.++++++++.+. ...++.++|.++.. | ++++|+.+|++++++.|.. ..
T Consensus 80 -~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 80 -EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp -HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 46899999999999999999999998543 25688999999998 8 5999999999999998865 57
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh------HHhHHHHHHHhhcCCccccccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNY------HAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~------~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+++++|.++..+|++++|+.++++++.+.|++. .++..++.++..+|+..+|.-.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999999999999999999987764 3677788888888887766543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=120.75 Aligned_cols=164 Identities=9% Similarity=0.113 Sum_probs=140.5
Q ss_pred hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-----hhhHHHHHHHhcccccHHHHHHHHHHHH
Q psy4772 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-----PWNYLRGAVVNAGEKSERALALTADAIT 135 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-----aw~~~~g~il~~~~~~~eAl~~~~~al~ 135 (235)
..+|+....+..++..+...|+|+ +|++.+.+++...|.... .|.+.+|.++...|++++|+..+++++.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~y~-----~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 69 YSDIERKKQFKDQVIMLCKQKRYK-----EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 345677778888999999999874 799999999999887543 2335678888889999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHH---HhCCCCh----HHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 136 MNPAN------YTVWQYRREILKALNKDLHQELKYIGEKI---KENSKNY----QVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 136 l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al---~~~P~n~----~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+.++. ..+++++|.++..+| ++++|+.++++++ +..|.+. .+++++|.++..+|++++|+.+++++
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 76655 569999999999999 5999999999999 6677654 69999999999999999999999999
Q ss_pred HHhCCC------ChHHhHHHHHHHhhcCCccccc
Q psy4772 203 LAQDAK------NYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 203 i~ldp~------n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+.+.++ -..+++++|.++..+|+.++|.
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai 256 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 998654 2788999999999999998883
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-15 Score=106.94 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=93.6
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-------hHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN-------YQV 178 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n-------~~a 178 (235)
+.+| +.+|.++...|++++|+..+++++.++|.++.+++.+|.++...| ++++|+.+++++++.+|.+ ..+
T Consensus 4 ~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKE-KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3455 467888888888888888888888888888888888888888888 4888888888888888777 788
Q ss_pred hHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 179 WRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 179 w~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
|+.+|.++...|++++|+.++++++.++| +...+..++.+...++.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888 67777777777765543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=109.98 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=75.8
Q ss_pred ccccHHHHHHHHHHHHc---CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 120 GEKSERALALTADAITM---NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l---~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
.|++++|+.+|++++++ +|.+..+|+.+|.++..+| ++++|+.+++++++++|+++.+++.+|.++..+|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777777 5777777777777777777 4777788888887778877777777787777778888888
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
..+++++.++|.++....+...+....+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 8788888777777777766665554333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-14 Score=104.62 Aligned_cols=117 Identities=8% Similarity=-0.043 Sum_probs=103.4
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPAN--- 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--- 140 (235)
+.+++.+|.++...|+++ +|+..|.+++..+|.++ .+| +.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~p~~~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYD-----DASQLFLSFLELYPNGVYTPNAL-YWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp -CCHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCSSSTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred cHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHCCCCcccHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 457889999999999874 79999999999999999 688 689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.+++.+|.++..+| ++++|+..++++++.+|++..+...+..+-...+
T Consensus 76 ~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 76 AGGLLKLGLSQYGEG-KNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 888999999999999 5999999999999999999988877766554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-15 Score=135.86 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=113.7
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..+| +.+|.++...|++++|+..++++++++|++..+|+++|.++..+| ++++|+.+++++++++|++..+|+++|.+
T Consensus 6 a~~~-~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEEL-KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HTTS-SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4566 578999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH--HhhcCCcccccccc
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV--INLLDDDDRGVLEY 233 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~--l~~l~~~~~~~~~~ 233 (235)
+..+|++++|+..++++++++|++..+|.+++.+ +...|+..+|.-.|
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998 55556666665443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-14 Score=112.93 Aligned_cols=157 Identities=7% Similarity=-0.027 Sum_probs=140.6
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc----ccHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE----KSER 125 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~----~~~e 125 (235)
.+|+..|+++.+. .++.+++.+|.++...+++ ++|+..|.+++.. .++.++ +.+|.++.. + ++++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~-----~~A~~~~~~a~~~--g~~~a~-~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDY-----QKAEYWAQKAAAQ--GDGDAL-ALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHT--TCHHHH-HHHHHHTTS-STTSCCHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHc--CCHHHH-HHHHHHHHc-CCCCCCHHH
Confidence 3677888888875 8999999999999998876 4899999999875 588999 689999998 6 8999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCC--CChHHhHHHHHHHHH----cCCchHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENS--KNYQVWRHRQIIVEW----MGEPDEE 195 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P--~n~~aw~~r~~~l~~----l~~~~~A 195 (235)
|+..|+++++ +.++.+++++|.++.. .+ ++++|+.+++++++..| .++.+++++|.++.. .+++++|
T Consensus 72 A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 72 ARQLAEKAVE--AGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999965 6899999999999987 55 69999999999999998 469999999999998 8899999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+.+|++|+++ |.++.+++++|.++.
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 9999999999 888999999999984
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=104.57 Aligned_cols=119 Identities=10% Similarity=0.058 Sum_probs=105.9
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN--- 140 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--- 140 (235)
|+.+.+|+.+|.++...|+++ +|+..+.+++.++|.++.+| +.+|.++...|++++|+.++++++.++|.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFD-----TALKHYDKAKELDPTNMTYI-TNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred ChHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHhcCCccHHHH-HHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 456788999999999998874 79999999999999999999 589999999999999999999999999888
Q ss_pred ----hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 141 ----YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 141 ----~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
..+|+.+|.++..+| ++++|+.+++++++.+| +...+..++.+...++
T Consensus 75 ~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEE-KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 899999999999999 59999999999999999 6888888887776544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=126.58 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=111.1
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHH----------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAIT----------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~----------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
..| ..+|.++...|++++|+..|+++++ ++|.+..+|+++|.++..++ ++++|+.+++++++
T Consensus 224 ~~~-~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDL-KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-DWQGAVDSCLEALE 301 (370)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 346 5789999999999999999999998 88999999999999999999 59999999999999
Q ss_pred hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 171 ~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
++|.++.+|+.+|.++..+|++++|+..+++|++++|++..++..++.++..+++..++
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877766544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-15 Score=127.72 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=79.4
Q ss_pred hcHHHHHHHHHhHHhcCCCch-----------------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh
Q psy4772 47 NLFSDELSYIEGLISHDVRNN-----------------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW 109 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~-----------------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw 109 (235)
++|++|+..|+++|++.|.+. .+|+++|.++..+|+++ +|+..|.++|+++|++..+|
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~ 267 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD-----EAIGHCNIVLTEEEKNPKAL 267 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH-----HHHHHHHHHHHHCTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH
Confidence 678999999999999999988 49999999999999985 79999999999999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+++|.++..+|++++|+.+++++++++|++..++..++.+........+++...|.+++..+|.+..
T Consensus 268 -~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 268 -FRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 7999999999999999999999999999999999999998766654578899999999999998754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=125.04 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=113.4
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH----------------hCCCCCchhhHHHHHHHhcccccHHHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ----------------IAPKNESPWNYLRGAVVNAGEKSERALALT 130 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~----------------l~p~~~~aw~~~~g~il~~~~~~~eAl~~~ 130 (235)
+..|..+|.++...|+++ +|+..|.++|+ ++|.+..+| +++|.++..+|++++|+.++
T Consensus 223 a~~~~~~g~~~~~~g~~~-----~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWE-----MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV-LNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHH-HHHHHHHHhccCHHHHHHHH
Confidence 466889999999999874 79999999998 888889999 58999999999999999999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH
Q psy4772 131 ADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 131 ~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
+++|+++|+++.+|+.+|.++..++ ++++|+..++++++++|.+..++..++.++..++++.++..
T Consensus 297 ~~al~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 297 LEALEIDPSNTKALYRRAQGWQGLK-EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 59999999999999999999999999999988888776653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=105.52 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHh---CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 90 REIDYCRDKIQI---APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 90 ~Al~~~~kal~l---~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
+|+..|.+++++ +|.++.+| +.+|.++...|++++|+..++++++++|+++.+++++|.++..+| ++++|+..++
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 85 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECY-LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG-RYEQGVELLL 85 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 466666666666 46666666 466666666677777777777777777777777777777777776 3677777777
Q ss_pred HHHHhCCCChHHhHHHHHHH
Q psy4772 167 EKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l 186 (235)
++++.+|.++....+...+.
T Consensus 86 ~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 86 KIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 77777777666555444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-15 Score=124.87 Aligned_cols=161 Identities=7% Similarity=-0.030 Sum_probs=141.5
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhh---------------------HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQ---------------------RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE 106 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~---------------------~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~ 106 (235)
...+++..+.+++.+.|....+++. .+.++...|+|+ +|.+.|..++...|.+.
T Consensus 62 r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~-----eA~~~l~~~~~~~p~~~ 136 (282)
T 4f3v_A 62 YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYA-----DAMEALEAAPVAGSEHL 136 (282)
T ss_dssp HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHH-----HHHHHHTSSCCTTCHHH
T ss_pred HHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCchH
Confidence 4588999999999999999999999 567888899875 79999999999999998
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--CC-ChHHhHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPAN--YTVWQYRREILKALNKDLHQELKYIGEKIKEN--SK-NYQVWRH 181 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~--P~-n~~aw~~ 181 (235)
++ +.+|.++...+++++|+..+++++...+.. ..+++++|.++..+| ++++|+.+|++++... |. ...++++
T Consensus 137 -~~-~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG-~~~eAl~~l~~a~~g~~~P~~~~da~~~ 213 (282)
T 4f3v_A 137 -VA-WMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA-LFTEAERRLTEANDSPAGEACARAIAWY 213 (282)
T ss_dssp -HH-HHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSTTTTTTHHHHHHH
T ss_pred -HH-HHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 77 689999999999999999999888764332 458999999999999 5999999999999655 66 6679999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
+|.++.++|+.++|...+++++..+|. ..++..+.
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999999999999999 77665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-14 Score=109.59 Aligned_cols=160 Identities=10% Similarity=-0.041 Sum_probs=130.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH------hCCCCCchhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ------IAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~------l~p~~~~aw~~~~g~il~~ 119 (235)
.|++++|...++.+....+..+.++..+|.++...|+++ +|+..+.+++. ..|....++ ..+|.++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~~~~~ 78 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFD-----EARASFQALQQQAQKSGDHTAEHRAL-HQVGMVERM 78 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHHHHH
Confidence 367889998665555533378899999999999999875 79999999999 555566778 579999999
Q ss_pred ccccHHHHHHHHHHHHc---CC----CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--Ch----HHhHHHHHHH
Q psy4772 120 GEKSERALALTADAITM---NP----ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NY----QVWRHRQIIV 186 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l---~P----~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~----~aw~~r~~~l 186 (235)
.|++++|+..+++++.+ .| ....+++++|.++..+| ++++|+.++++++++.+. +. .++..+|.++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999999998 34 34668999999999999 599999999999976432 22 3468999999
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
...|++++|+.++++++.+-......
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999976555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=115.41 Aligned_cols=157 Identities=8% Similarity=0.081 Sum_probs=128.8
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----h-hhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH-
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----P-WNYLRGAVVNAGEKSERALALTADAITMNPANYT- 142 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----a-w~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~- 142 (235)
.+...+..+...|++ ++|+..+.+++...|..+. + |.+.+|.++...+++++|+..+++++.+.++...
T Consensus 77 ~l~~~i~~~~~~~~y-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRY-----KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHTTCH-----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHHHHHHHhhH-----HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 344456667777776 4799999999998887765 2 4234788888889999999999999997655433
Q ss_pred -----HHHHHHHHHHHhhHhHHHHHHHHHHHHHh-------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC-
Q psy4772 143 -----VWQYRREILKALNKDLHQELKYIGEKIKE-------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN- 209 (235)
Q Consensus 143 -----aw~~r~~~l~~l~~~~eeal~~~~~al~~-------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n- 209 (235)
+++++|.++..+| ++++|+.+++++++. .|....+++++|.++..+|++++|+.++++++.+.+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp THHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 7999999999999 599999999999952 23344589999999999999999999999999988666
Q ss_pred -----hHHhHHHHHHHhhcCCc-ccccc
Q psy4772 210 -----YHAWQHRQWVINLLDDD-DRGVL 231 (235)
Q Consensus 210 -----~~aw~~r~~~l~~l~~~-~~~~~ 231 (235)
+.+++++|.++..+|+. .+|.-
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 78999999999999965 66543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=120.63 Aligned_cols=179 Identities=7% Similarity=-0.087 Sum_probs=144.8
Q ss_pred hhcHHHHHHHHHhHHhcCCC-------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHH
Q psy4772 46 CNLFSDELSYIEGLISHDVR-------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~-------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~ 112 (235)
.|++++|+.++++|+.+.++ .+.++.++|.++..+|+++ +|+..|.+++.+.+... .++ ++
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~ 227 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD-----KALPHLEAALELAMDIQNDRFIAISL-LN 227 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH-HH
Confidence 57899999999999998654 3568899999999999875 79999999999755332 466 57
Q ss_pred HHHHHhcccccHHHHHHHHHHHH-----cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCChHHhHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAIT-----MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-----SKNYQVWRHR 182 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~-----l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-----P~n~~aw~~r 182 (235)
+|.++...|++++|+.++++++. .+|..+.+++++|.++..+| ++++|+.++++++++. |........+
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999 89999999999999999999 5999999999999984 4444455666
Q ss_pred HHHHHHcCC---chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 183 QIIVEWMGE---PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 183 ~~~l~~l~~---~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+.++...++ +.+|+..+++ ....|....++..+|.++...|+..+|.-.
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 358 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAF 358 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666777 7777777776 334455566777788888888887766543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-12 Score=116.40 Aligned_cols=172 Identities=8% Similarity=0.028 Sum_probs=134.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc-----c
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-----E 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-----~ 121 (235)
+++++|+.+|++++.. .++.+++++|.++... .......++|+..|.+++.. .++.++ +.+|.++... +
T Consensus 237 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g-~~~~~d~~~A~~~~~~a~~~--~~~~a~-~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG-LAGAKEPLKALEWYRKSAEQ--GNSDGQ-YYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHHTT--TCHHHH-HHHHHHHHHCBTTBCC
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHc--CCHHHH-HHHHHHHHcCCCCCcC
Confidence 4677888888887765 5677888888887761 11112345889999998765 567788 5788888877 7
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALN--KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEE 195 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~--~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~A 195 (235)
++++|+..++++++. .++.+++++|.++...| +++++|+.+++++++. .++.+|+++|.++.. .+++++|
T Consensus 311 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 311 NREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 899999999999886 46788999999988753 2488999999999887 688999999999988 8899999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhh----cCCccccc
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINL----LDDDDRGV 230 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~----l~~~~~~~ 230 (235)
+.++++|++.. ++.+++++|.++.. .++..++.
T Consensus 387 ~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 387 AIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998864 68899999999865 55555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=117.89 Aligned_cols=164 Identities=8% Similarity=-0.035 Sum_probs=140.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc---cc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE---KS 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~---~~ 123 (235)
+++++|+.+|+++++. .++.+++.+|.++.....-.+...++|+..|.++++.. ++.++ +.+|.++...| ++
T Consensus 273 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~-~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQ-ANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHH-HHHHHHHHHSCCHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHH-HHHHHHHHhCCCcccH
Confidence 6789999999999875 68899999999998861111123468999999999874 56788 68999998866 78
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEE 195 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~A 195 (235)
++|+.+|+++++. .++.+++++|.++.. .+ ++++|+.+++++++. .++.+++++|.++.. .+++++|
T Consensus 348 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 348 KKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK-DEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999998 689999999999998 56 699999999999986 479999999999998 8999999
Q ss_pred HHHHHHHHHhCC---CChHHhHHHHHHH
Q psy4772 196 LALTAAILAQDA---KNYHAWQHRQWVI 220 (235)
Q Consensus 196 l~~~~~ai~ldp---~n~~aw~~r~~~l 220 (235)
+.+|++|++.+| .++.++.+++.+.
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 999999999994 4888888776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=111.81 Aligned_cols=178 Identities=13% Similarity=0.008 Sum_probs=144.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh-----HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh-----hHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS-----AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW-----NYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~-----a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw-----~~~~g~ 115 (235)
.|++++|+..++++|...|.... ++..+|.++...|+++ +|+..+.+++.+.|.....+ ...+|.
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT-----RSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 47899999999999999887643 6889999999999875 79999999999988776552 135889
Q ss_pred HHhcccccHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-----hHHhHHH
Q psy4772 116 VVNAGEKSERALALTADAITMN--------PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN-----YQVWRHR 182 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~--------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n-----~~aw~~r 182 (235)
++...|++++|+..+++++.+. |....++.++|.++...| ++++|..++++++++.|.. ..++..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 9999999999999999999875 445678889999999999 5999999999999988863 4678899
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCC--CChHHhHH-----HHHHHhhcCCcccc
Q psy4772 183 QIIVEWMGEPDEELALTAAILAQDA--KNYHAWQH-----RQWVINLLDDDDRG 229 (235)
Q Consensus 183 ~~~l~~l~~~~~Al~~~~~ai~ldp--~n~~aw~~-----r~~~l~~l~~~~~~ 229 (235)
+.++...|++++|+..+++++.+.+ .+...|.. ++.++...|+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999998743 33223332 22334456665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-12 Score=115.07 Aligned_cols=162 Identities=8% Similarity=-0.044 Sum_probs=133.5
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH-H--hcccccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAV-V--NAGEKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i-l--~~~~~~~ 124 (235)
++++|+..|++++...|..+.+++++|.++.... ..+.++++|+..|.++. |.++.++ +.+|.+ + ...++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~-~~~~d~~~A~~~~~~aa---~g~~~a~-~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT-LGTPDEKTAQALLEKIA---PGYPASW-VSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG-GSSCCHHHHHHHHHHHG---GGSTHHH-HHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHc---CCCHHHH-HHHHHHHHhCCCCCCHH
Confidence 8899999999999999999999999999986541 22234568999999988 8999999 689888 4 4578899
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEELA 197 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~Al~ 197 (235)
+|+..|+++++. .++.+++++|.++..- .+++++|+.+|++++ |.++.+++++|.++.. ..++++|+.
T Consensus 269 ~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 269 QMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 999999999865 4899999999998843 125899999999998 9999999999988876 347899999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+|++|.+ +.++.+.+++|.++.
T Consensus 344 ~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 344 HLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHT--TTCTTHHHHHHHHHH
T ss_pred HHHHHHh--hChHHHHHHHHHHHH
Confidence 9999887 567888899998874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=96.87 Aligned_cols=82 Identities=7% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+..++++++.+|.++.+|+.+|.++...| ++++|+.+++++++++|.+..+|+.+|.++...|++++|+..+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555 355555555555555555555555555555555555555555555555
Q ss_pred hCC
Q psy4772 205 QDA 207 (235)
Q Consensus 205 ldp 207 (235)
++|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 555
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-12 Score=114.88 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=137.0
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----ccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG----EKS 123 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~----~~~ 123 (235)
..+++..++..+...+|. +++++|.++...|. +.+.++|+..|.++...+|.....+ +.+|.++... +++
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~--~~~~~~A~~~~~~aa~~g~~~a~~~-~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQ--PEQQAELLKQMEAGVSRGTVTAQRV-DSVARVLGDATLGTPDE 233 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHTCGGGSSCCH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCC--cccHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCCCCCH
Confidence 456677778888777766 99999999999762 3356789999999999999999988 5799999776 689
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-----CchHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILK---ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-----EPDEE 195 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~---~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-----~~~~A 195 (235)
++|+..|++++ |.++.+++++|.++. ..+ ++++|+.+|+++++. .++.+++++|.++. .| ++++|
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~-d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELG-DVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 99999999998 999999999999944 445 699999999999864 59999999999998 55 89999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+.+|++|+ |.++.+++++|.++..
T Consensus 307 ~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 307 EAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 99999999 9999999999988854
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=98.33 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=114.8
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
+.++..+|.++...|+++ +|+..+.+++.+.|.... ++ ..+|.++...|++++|+..+++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFR-----DAVIAHEQRLLIAKEFGDKAAERIAY-SNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHhCCchHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 567889999999998864 789999999998877653 66 478999999999999999999999987664
Q ss_pred ------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 141 ------YTVWQYRREILKALNKDLHQELKYIGEKIKENSK------NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 141 ------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
..+++++|.++..+| ++++|+.+++++++..+. ...++..+|.++...|++++|++++++++.+-.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 678899999999999 599999999999987432 2568889999999999999999999999987543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-13 Score=97.85 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=49.3
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hHHhHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQVWRHRQII 185 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~aw~~r~~~ 185 (235)
.+|.++...|++++|+..|+++++++|.++.+|+++|.++..+| ++++|+.+++++++++|++ ..+++.+|.+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG-EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 45555555555555666666665555555555555555555555 3555555555555555555 5555555555
Q ss_pred HHHcCCchHHHHH
Q psy4772 186 VEWMGEPDEELAL 198 (235)
Q Consensus 186 l~~l~~~~~Al~~ 198 (235)
+..+|++++|+..
T Consensus 88 ~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 88 QGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHCCCCCSSS
T ss_pred HHHHHhHhhhHhH
Confidence 5555555444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=92.53 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 91 EIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 91 Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
|+..|.++++++|.++.+| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..+| ++++|+.+++++++
T Consensus 4 a~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLR-FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG-DRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHH-HHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 4555555555555555555 355555555555555555555555555555555555555555555 35555555555555
Q ss_pred hCC
Q psy4772 171 ENS 173 (235)
Q Consensus 171 ~~P 173 (235)
++|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-12 Score=90.40 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHh
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAW 213 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw 213 (235)
++.+|+.+|.++...| ++++|+.+++++++++|.++.+|+++|.++..+|++++|+..+++++.++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4678999999999999 59999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhcCCccccccc
Q psy4772 214 QHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 214 ~~r~~~l~~l~~~~~~~~~ 232 (235)
+.+|.++..+|....+.-.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 9999999888877665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.9e-12 Score=108.08 Aligned_cols=178 Identities=11% Similarity=0.049 Sum_probs=140.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhH------hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC--------CCchhhH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSA------WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK--------NESPWNY 111 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a------~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~--------~~~aw~~ 111 (235)
.|++++|+..+++++.+.|..... +.++|.++..+|+++ +|+..+.+++.+.+. ...++ .
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~-~ 139 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ-----TAWETQEKAFQLINEQHLEQLPMHEFLV-R 139 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCTTSTHHHHHH-H
T ss_pred cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHhccccCcHHHHHH-H
Confidence 488999999999999988776433 688999999999875 789999999987643 33455 4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhH----
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPAN-----YTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWR---- 180 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~-----~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~---- 180 (235)
.+|.++...|++++|+..+++++.+.|.. ..++..++.++...| ++++|+..+++++.+.+. ....|.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 68999999999999999999999998763 467889999999999 599999999999987433 322333
Q ss_pred -HHHHHHHHcCCchHHHHHHHHHHHhCCCC----hHHhHHHHHHHhhcCCccccc
Q psy4772 181 -HRQIIVEWMGEPDEELALTAAILAQDAKN----YHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 181 -~r~~~l~~l~~~~~Al~~~~~ai~ldp~n----~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.++.++...|++++|...+++++...|.+ ..++..++.++...|+.+++.
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 273 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 23455778999999999999999888764 225667777777778766553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=85.59 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+..+|+.+|.++...+ ++++|+.+++++++.+|.+..+|+.+|.++...|++++|+..+++++.++|.+..++.++|.+
T Consensus 8 ~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556666666666666 366666666666666666666666666666666666666666666666666666666666666
Q ss_pred Hhh
Q psy4772 220 INL 222 (235)
Q Consensus 220 l~~ 222 (235)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=91.30 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=71.1
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+.+|.++...|++++|+..++++++++|.++. +|+.+|.++..+| ++++|+.+++++++++|++..+|.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-DWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 35677777788888888888888888888888 8888888888888 4788888888888888888877754
Q ss_pred CCchHHHHHHHHHHHhCCCChH
Q psy4772 190 GEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+.+.+++.+|++++..+|++..
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 4456777778877777777653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=85.46 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=58.0
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..+| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..+| ++++|+.+++++++++|.+..++..+|.+
T Consensus 9 ~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4455 456777777777777777777777777777777777777777777 37777777777777777777777777776
Q ss_pred HHHcC
Q psy4772 186 VEWMG 190 (235)
Q Consensus 186 l~~l~ 190 (235)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=86.08 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=40.6
Q ss_pred CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 137 NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|+++.+|+.+|.++..+| ++++|+.+++++++++|.++.+|+.+|.++..+|++++|+..+++++.+.|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4555555555665555555 3555666666666666665556666666665566666666666666555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=95.99 Aligned_cols=140 Identities=7% Similarity=-0.059 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCC-CCCchhhHHHHHHHhcccccHHHHHHHHHHHH------cCCCChHHHHHHHHHHHHhhHhHHH
Q psy4772 88 IQREIDYCRDKIQIAP-KNESPWNYLRGAVVNAGEKSERALALTADAIT------MNPANYTVWQYRREILKALNKDLHQ 160 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p-~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~------l~P~~~~aw~~r~~~l~~l~~~~ee 160 (235)
+++|...+..+.. +| ....++ ..+|.++...|++++|+..+++++. ..|....+++++|.++..+| ++++
T Consensus 8 ~~~A~~~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~ 84 (203)
T 3gw4_A 8 YALAERQAQALLA-HPATASGAR-FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG-NWDA 84 (203)
T ss_dssp HHHHHHHHHHHHT-STTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHhcC-ChHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-CHHH
Confidence 3467775444444 55 566788 5799999999999999999999999 67778889999999999999 5999
Q ss_pred HHHHHHHHHHh---CCC----ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--h----HHhHHHHHHHhhcCCcc
Q psy4772 161 ELKYIGEKIKE---NSK----NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--Y----HAWQHRQWVINLLDDDD 227 (235)
Q Consensus 161 al~~~~~al~~---~P~----n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~----~aw~~r~~~l~~l~~~~ 227 (235)
|+.++++++++ .|. ...+++++|.++..+|++++|+..+++++.+.+.. . .++.++|.++..+|+..
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999999998 443 35679999999999999999999999999764332 2 23578888888888877
Q ss_pred ccc
Q psy4772 228 RGV 230 (235)
Q Consensus 228 ~~~ 230 (235)
++.
T Consensus 165 ~A~ 167 (203)
T 3gw4_A 165 EAQ 167 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-11 Score=85.99 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
+|+++.+| +.+|.++...|++++|+..++++++++|+++.+|+.+|.++..+| ++++|+..+++++++.|
T Consensus 3 ~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTR-YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD-RTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred CccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhh
Confidence 45555555 345555555555555555555555555555555555555555555 25555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=86.76 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=77.8
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
.+.+|.++...|+++ +|+..|.++++++|.++. +| +.+|.++...|++++|+..|+++++++|++..+|.+
T Consensus 3 ~~~~a~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIE-----NALQALEEFLQTEPVGKDEAY-YLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-- 74 (99)
T ss_dssp THHHHHHHHHHTCHH-----HHHHHHHHHHHHCSSTHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred HHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCcHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--
Confidence 356788888888764 789999999999999988 88 688999999999999999999999999999988865
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+ .+.+++.++++++..+|.+.
T Consensus 75 ------~-~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ------K-MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ------H-HHHHHHHHHCCTTHHHHCCS
T ss_pred ------H-HHHHHHHHHHHHhccCcccc
Confidence 3 37888889998888888765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=8.1e-11 Score=101.69 Aligned_cols=168 Identities=9% Similarity=-0.012 Sum_probs=139.2
Q ss_pred HHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHhcccccHHHHH
Q psy4772 51 DELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP--KNESPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 51 ~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p--~~~~aw~~~~g~il~~~~~~~eAl~ 128 (235)
.|+..+++.++..+....++...|.++...|+++ +|+..+.+.|..+| .+..+. .....++..+|+.+.|.+
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~e-----eAL~~l~~~i~~~~~~~~lea~-~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLD-----KSLETCVEGIDNDEAEGTTELL-LLAIEVALLNNNVSTAST 157 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHTSSCSTTHHHHH-HHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH-----HHHHHHHHHhccCCCcCcHHHH-HHHHHHHHHCCCHHHHHH
Confidence 3889999999987777888899999999999874 79999999999997 777888 578899999999999999
Q ss_pred HHHHHHHcCCC------ChHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 129 LTADAITMNPA------NYTVWQYRREILKALN-KDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 129 ~~~~al~l~P~------~~~aw~~r~~~l~~l~-~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.++++...+|+ ......--+|+....| ..+.+|+..|+++.+..|. +....++ ++.++|++++|...+
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 99999999993 3333333355565555 1389999999999999997 3444444 889999999999999
Q ss_pred HHHHHh----------CCCChHHhHHHHHHHhhcCCcc
Q psy4772 200 AAILAQ----------DAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 200 ~~ai~l----------dp~n~~aw~~r~~~l~~l~~~~ 227 (235)
+.++++ +|+|+.+..++..+-..+|+.+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a 272 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDT 272 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHH
Confidence 988887 5999999999998888888743
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-11 Score=105.00 Aligned_cols=160 Identities=8% Similarity=0.014 Sum_probs=133.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh-----------------HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS-----------------AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP 108 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~-----------------a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a 108 (235)
-|+|++|+..|.++++.+|...+ ++.++|.++...|+++ +|++.+.+++.+.+....+
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~-----~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKD-----KLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHTHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHccch
Confidence 47899999999999999998764 5788999999999874 7999999999988877654
Q ss_pred hh-----HHHHHHHhcccccHHHHHHHHHHHHcCC------CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh------
Q psy4772 109 WN-----YLRGAVVNAGEKSERALALTADAITMNP------ANYTVWQYRREILKALNKDLHQELKYIGEKIKE------ 171 (235)
Q Consensus 109 w~-----~~~g~il~~~~~~~eAl~~~~~al~l~P------~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~------ 171 (235)
.. ..+|.+....|.+++|+..+++++...+ .-..++..+|.++...| .+++|+.++++++..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHhccc
Confidence 21 2357777788999999999999997643 33668899999999999 599999999999875
Q ss_pred CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 172 ~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
.|....++...|.++..+|++.+|..++++++.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 3445679999999999999999999999999987655443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-10 Score=98.49 Aligned_cols=160 Identities=9% Similarity=-0.001 Sum_probs=133.5
Q ss_pred hhcHHHHHHHHHhHHhcCC--CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC-----CCchhhHHHHHHHh
Q psy4772 46 CNLFSDELSYIEGLISHDV--RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK-----NESPWNYLRGAVVN 118 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P--~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~-----~~~aw~~~~g~il~ 118 (235)
.|++++|+..+.+.|..+| .+.++....+.++..+|+.+ .|...++++.+.+|+ +....+..-+++..
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d-----~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS-----TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence 4899999999999999997 99999999999999999875 799999999999993 44333233354444
Q ss_pred c--ccccHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh----------CCCChHHhHHHHH
Q psy4772 119 A--GEKSERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKE----------NSKNYQVWRHRQI 184 (235)
Q Consensus 119 ~--~~~~~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~----------~P~n~~aw~~r~~ 184 (235)
. .+++++|+..|++++...|+ .+..+.+ ++..+| ++++|...++.+++. +|+|+.+..+++.
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g-~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR-NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT-CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC-CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 3 34899999999999999887 3445444 899999 599999999988887 5999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+...+|+ ++.+++.++...+|+++-.--+.
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 9999997 88999999999999998765443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=89.51 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=105.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCch------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~ 113 (235)
.+++++|+.++++++.+.|... .++..+|.++..+|+++ +|+..+.+++.+.+.. ..++ +.+
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~-~~l 95 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFE-----TASEYYKKTLLLARQLKDRAVEAQSC-YSL 95 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHhCCcHHHHHHH-HHH
Confidence 4789999999999999987755 48999999999999875 7999999999987765 4466 578
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPA------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
|.++...|++++|+..+++++.+.+. ...++..++.++..+| ++++|+.++++++++..+
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987433 3567889999999999 599999999999987654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=96.36 Aligned_cols=150 Identities=9% Similarity=-0.037 Sum_probs=117.5
Q ss_pred HhHHhcCCCchhHh--hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---c-c---cHHHH
Q psy4772 57 EGLISHDVRNNSAW--TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---E-K---SERAL 127 (235)
Q Consensus 57 ~~aL~~~P~~~~a~--~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---~-~---~~eAl 127 (235)
+++...-|.+.+|| +.+|.-+...+ +.+...+|+.+|++|++++|+++.+| -.++.++... + . .-+++
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~--~~~~~~~A~~l~e~Al~lDP~~a~A~-A~la~a~~~~~~~~~~~~~~~~~l 260 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHG--DDKSLNRASELLGEIVQSSPEFTYAR-AEKALVDIVRHSQHPLDEKQLAAL 260 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhccCCCchhhHHHH
Confidence 34556689998888 56777666653 45678899999999999999999999 4666666421 1 1 11111
Q ss_pred H-HHH--HHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 128 A-LTA--DAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 128 ~-~~~--~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
. .+. .++..+|..+.++.-.+.++...| ++++|+..+++++.++| +..+|..+|+++...|++++|++.|++|+.
T Consensus 261 ~~a~~a~~a~~~~~~~a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKG-KTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 122 234678999998888888887778 59999999999999997 578999999999999999999999999999
Q ss_pred hCCCChH
Q psy4772 205 QDAKNYH 211 (235)
Q Consensus 205 ldp~n~~ 211 (235)
++|....
T Consensus 339 L~P~~~t 345 (372)
T 3ly7_A 339 LRPGANT 345 (372)
T ss_dssp HSCSHHH
T ss_pred cCCCcCh
Confidence 9998864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=109.39 Aligned_cols=132 Identities=10% Similarity=0.031 Sum_probs=102.1
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC----
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA---- 139 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~---- 139 (235)
...+.+|+.+|.++...|++. +|+..|.++ +++.+| ...|.++.+.|++++|++++..+.+..|.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~k-----EAIdsYiKA-----dD~say-~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id 1170 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVK-----EAIDSYIKA-----DDPSSY-MEVVQAANTSGNWEELVKYLQMARKKARESYVE 1170 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHH-----HHHHHHHhc-----CChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhccccccc
Confidence 467899999999999988874 788888775 788888 68889999999999999999887765533
Q ss_pred -----------------------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 140 -----------------------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 140 -----------------------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
+...|...|..+...| .+++|+.+|+++ ..|..++.++.++|++++|+
T Consensus 1171 t~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg-~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK-MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHH
Confidence 2345666777777777 478888888885 47888888888888888888
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+++++| ++..+|...+.++
T Consensus 1242 EaarKA-----~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1242 DGARKA-----NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHh-----CCHHHHHHHHHHH
Confidence 888888 5557776555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.8e-09 Score=80.04 Aligned_cols=121 Identities=7% Similarity=0.020 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHH
Q psy4772 85 PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQ 160 (235)
Q Consensus 85 e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~ee 160 (235)
+.++++|+..|.++.+.. ++.+. +|.++...+..++|+..|+++++. .++.+++++|.++.. .+ ++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~-d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC---LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK-DLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC-CHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc-cHHH
Confidence 456778889999998877 44444 788888888888899999999987 788999999999988 44 6899
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 161 ELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
|+.+++++.+. .++.+++++|.++.. .+++++|+.++++|++. .+..+..+++
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999887 789999999999988 88999999999999987 4455554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=102.67 Aligned_cols=130 Identities=8% Similarity=-0.065 Sum_probs=88.6
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.+|.+.|..+...|+++ +|...|.++ ..| .++|.++..+|++++|++++.++ .++..|...
T Consensus 123 ~a~~~IGd~~~~~g~ye-----eA~~~Y~~a--------~n~-~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v 183 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYD-----AAKLLYNNV--------SNF-GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV 183 (449)
T ss_dssp --------------CTT-----THHHHHHHT--------TCH-HHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHH-----HHHHHHHHh--------hhH-HHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHH
Confidence 46666666666666665 577777765 456 46777777777777787777777 467777777
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
..++..+| +|+.|..+... |..+|++.. .+..++.+.|++++++.++++++.+++.+...|..++.++.
T Consensus 184 ~~aCv~~~-ef~lA~~~~l~-L~~~ad~l~---~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 184 CFACVDGK-EFRLAQMCGLH-IVVHADELE---ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTT-CHHHHHHTTTT-TTTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcC-cHHHHHHHHHH-HHhCHhhHH---HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 77777777 47777666664 335555533 36677899999999999999999999999999999998874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=108.21 Aligned_cols=152 Identities=10% Similarity=0.094 Sum_probs=124.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC--------------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK-------------------- 104 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~-------------------- 104 (235)
..|++++|+.+|.+| +++++|...|.++...|+++ +|++++..+.+..+.
T Consensus 1117 ~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyE-----EAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWE-----ELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence 357889999998776 88889999999999888874 567777666655433
Q ss_pred -------CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 105 -------NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 105 -------~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+...| ...|..+...|++++|+.+|.++ ..|..++.++.++|+ +++|+++++++ ++..
T Consensus 1187 e~fI~~~n~ad~-~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge-~q~AIEaarKA-----~n~~ 1251 (1630)
T 1xi4_A 1187 EEFINGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTR 1251 (1630)
T ss_pred HHHHhCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC-HHHHHHHHHHh-----CCHH
Confidence 23456 46899999999999999999996 589999999999995 99999999998 4445
Q ss_pred HhH------------------------------HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 178 VWR------------------------------HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 178 aw~------------------------------~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+|. .++..+...|.+++|+.++++++.++|.+...|..++.++.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 554 44556778899999999999999999999999999998874
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-09 Score=99.06 Aligned_cols=170 Identities=10% Similarity=0.015 Sum_probs=143.0
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHH-HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREI-DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al-~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~ 128 (235)
+.....|+++|...|.+++.|...+..+...|..+ +|. ..|.+++...|.+...| ...+.+....|..++|..
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~-----~a~r~il~rAi~~~P~s~~Lw-l~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS-----TVITKYLKLGQQCIPNSAVLA-FSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT-----THHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhCCHHHHHH
Confidence 44567899999999999999999999999888765 576 99999999999999888 567788888899999999
Q ss_pred HHHHHHHc-----------CCC-----------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCCChHHhHHHHHH
Q psy4772 129 LTADAITM-----------NPA-----------NYTVWQYRREILKALNKDLHQELKYIGEKIKE-NSKNYQVWRHRQII 185 (235)
Q Consensus 129 ~~~~al~l-----------~P~-----------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-~P~n~~aw~~r~~~ 185 (235)
.|++++.. .|. ...+|.....+..+.+ ..+.|...+.+|++. .+.....|...+.+
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~-~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ-GLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999975 253 4568998888888888 489999999999998 55678888888877
Q ss_pred HHHcCC-chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 186 VEWMGE-PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 186 l~~l~~-~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
-.+.++ ++.|...|+++++..|++...|...+..+...|+.
T Consensus 479 E~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 479 EYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 777765 89999999999999999999996655555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-10 Score=104.25 Aligned_cols=191 Identities=8% Similarity=0.120 Sum_probs=142.8
Q ss_pred ccchhhhhccCCCCCCCCCCchhHhhhh-hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHH
Q psy4772 16 YKNREEWKDLRPIPQDDGPTPVVAIAYS-QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDY 94 (235)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~ 94 (235)
|..-+++.++.-+-..|+...+..++-. -..|.|++|..+|.++ +.|..+|.++.++|+|. +|++.
T Consensus 104 Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq-----~AVea 170 (449)
T 1b89_A 104 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ-----AAVDG 170 (449)
T ss_dssp -----CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHH-----HHHHH
T ss_pred HHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHH-----HHHHH
Confidence 4434466666666666554444444433 2347899999999977 69999999999999985 79999
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 95 ~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
+.++ .++..| ...+.+....|+++.|..+... |..+|++.. ....+|.+.| .+++++.++++++.+++.
T Consensus 171 ~~KA-----~~~~~W-k~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~lv~~Yek~G-~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 171 ARKA-----NSTRTW-KEVCFACVDGKEFRLAQMCGLH-IVVHADELE---ELINYYQDRG-YFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHH-----TCHHHH-HHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HHHHHHHHTT-CHHHHHHHHHHHTTSTTC
T ss_pred HHHc-----CCchhH-HHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HHHHHHHHCC-CHHHHHHHHHHHhCCcHH
Confidence 9999 478899 4677888889999999887776 447777644 4667788899 499999999999999999
Q ss_pred ChHHhHHHHHHHHH--cCCchHHHHHHHHHHHhCC-----CChHHhHHHHHHHhhcCCccccc
Q psy4772 175 NYQVWRHRQIIVEW--MGEPDEELALTAAILAQDA-----KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 175 n~~aw~~r~~~l~~--l~~~~~Al~~~~~ai~ldp-----~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+...|..++.++.+ .++..+.++.|.+.+.+.| .+++.|....+++..-|..+.|.
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999999855 5578899999999999999 99999999999887777765543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.94 E-value=8.8e-09 Score=90.72 Aligned_cols=127 Identities=6% Similarity=0.019 Sum_probs=101.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcC---CCCHHHH---HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTT---QFTPEVI---QREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~---~~~e~~~---~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
..+.+|+.+|++||+++|+++.+|..+++++.... ....... ..|+. -..++..+|..+.++ ...+.++...
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~-~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIY-QIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHH-HHHHHHHHhC
Confidence 35699999999999999999999999999886321 1222222 22222 113447789999888 4677777778
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
|++++|+..+++++.++|. ..+|..+|+++.-.| ++++|++.+++|++++|....
T Consensus 291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G-~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG-MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999985 788899999999999 599999999999999998764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=75.85 Aligned_cols=120 Identities=9% Similarity=0.015 Sum_probs=99.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----ccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~~ 122 (235)
.++++|+.+|+++.+..+ +.+. +|.++...+.. ++|+..|.++... .++.++ +.+|.++.. .++
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~-----~~A~~~~~~Aa~~--g~~~a~-~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINK-----QKLFQYLSKACEL--NSGNGC-RFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCH-----HHHHHHHHHHHHT--TCHHHH-HHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCH-----HHHHHHHHHHHcC--CCHHHH-HHHHHHHHcCCCCCcc
Confidence 467999999999999874 4444 99888776544 3699999999987 688898 689999988 688
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
+++|+..|+++++. .++.+++++|.++.. .+ ++++|+.+++++.+. .+..+..+++
T Consensus 77 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 77 LRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK-NEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999999997 789999999999998 55 699999999999997 4555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-08 Score=94.64 Aligned_cols=174 Identities=8% Similarity=-0.058 Sum_probs=138.3
Q ss_pred hcHHHHH-HHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----------CCC----------
Q psy4772 47 NLFSDEL-SYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----------APK---------- 104 (235)
Q Consensus 47 ~~~~~Al-~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----------~p~---------- 104 (235)
++.++|. ..|++|+..+|++...|...+.+....|+++ +|...|.+++.. .|.
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e-----~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIP-----EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 3446787 9999999999999999999999999988753 677888888865 253
Q ss_pred -CCchhhHHHHHHHhcccccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 105 -NESPWNYLRGAVVNAGEKSERALALTADAITM-NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 105 -~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
...+| .....+..+.|..+.|...|.+|+.. .+....+|...+.+-.+++++.+.|...|+++++..|+++..|...
T Consensus 432 ~~~~vW-i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 432 KLTYVY-CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp HHHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 34478 45556666778899999999999998 5555777777676666665447999999999999999999999988
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCC---CChHHhHHHHHHHhhcCCc
Q psy4772 183 QIIVEWMGEPDEELALTAAILAQDA---KNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 183 ~~~l~~l~~~~~Al~~~~~ai~ldp---~n~~aw~~r~~~l~~l~~~ 226 (235)
+..+...|+.+.|...|++|+...| +....|......-...|..
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 8888899999999999999999988 3555666554444455544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.9e-08 Score=82.69 Aligned_cols=159 Identities=12% Similarity=0.050 Sum_probs=107.7
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCC-CCH---------------HHHHHHHHH-------HHHHHH-----
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQ-FTP---------------EVIQREIDY-------CRDKIQ----- 100 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~-~~e---------------~~~~~Al~~-------~~kal~----- 100 (235)
+--.+.+++-.|..+|++......-|..+..-+. |.+ ....+|... ..++|.
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~ 127 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPG 127 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4667889999999999998888777766554321 111 012223333 333333
Q ss_pred -------------------hCCCCCchhhHHHHHHHhc-----------ccccHHHHHHHHHHHHcCCC--ChHHHHHHH
Q psy4772 101 -------------------IAPKNESPWNYLRGAVVNA-----------GEKSERALALTADAITMNPA--NYTVWQYRR 148 (235)
Q Consensus 101 -------------------l~p~~~~aw~~~~g~il~~-----------~~~~~eAl~~~~~al~l~P~--~~~aw~~r~ 148 (235)
.+|+++.++ +=.|.+... ++...+|....+++++++|+ +..+|..+|
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~dve~L-~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG 206 (301)
T 3u64_A 128 FTREVFSGDEQRLHKVLSRCTRVDVGTL-YWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT 206 (301)
T ss_dssp HHHHHTSSCHHHHHHHHTTCCGGGHHHH-HHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHHHHHcCccccHHH-HHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 233334433 223333321 12357888888888888888 556888888
Q ss_pred HHHHHh-----hHhHHHHHHHHHHHHHhCCC-ChHHhHHHHHHHHH-cCCchHHHHHHHHHHHhCCCC
Q psy4772 149 EILKAL-----NKDLHQELKYIGEKIKENSK-NYQVWRHRQIIVEW-MGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 149 ~~l~~l-----~~~~eeal~~~~~al~~~P~-n~~aw~~r~~~l~~-l~~~~~Al~~~~~ai~ldp~n 209 (235)
.+|..+ | +.++|..+|+++|+++|+ +..+++..|..+.. .|+++++...+++|+..+|+.
T Consensus 207 ~lY~~vPp~~gG-d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 207 KFYAAAPESFGG-GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHSCTTTTC-CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhCCCccCC-CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 888885 6 578888888888888886 48888888888866 488888888888888888774
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=87.87 Aligned_cols=158 Identities=7% Similarity=-0.020 Sum_probs=126.9
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch-----------------hhHHHHHHHhcccccHHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP-----------------WNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a-----------------w~~~~g~il~~~~~~~eAl~~ 129 (235)
|.+....|.-+...|+|. +|++.|.+++...|....+ . ..+|.++...|++++|++.
T Consensus 4 p~~~l~~a~~l~~~~~y~-----eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al-~~l~~~y~~~~~~~~a~~~ 77 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYN-----EAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSI-LELGQLYVTMGAKDKLREF 77 (434)
T ss_dssp TTHHHHHHHHHHHHTCHH-----HHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHH-HHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHH-HHHHHHHHHCCCHHHHHHH
Confidence 455666777788888774 7999999999999998753 5 4689999999999999999
Q ss_pred HHHHHHcCCCChHHH------HHHHHHHHHhhHhHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHHcCCchHHHH
Q psy4772 130 TADAITMNPANYTVW------QYRREILKALNKDLHQELKYIGEKIKENSK------NYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 130 ~~~al~l~P~~~~aw------~~r~~~l~~l~~~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
+.+++.+.+....+. ...+.++...| .+++++.++++++...+. -..++..+|.++...|++.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 78 IPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 999999887766543 33455555556 489999999999875443 35688999999999999999999
Q ss_pred HHHHHHHh------CCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 198 LTAAILAQ------DAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 198 ~~~~ai~l------dp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.++.++.. .|....++...+.++..+|+..++.-
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99999875 45556788889999988888766643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.6e-08 Score=70.06 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=62.7
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
+|+++++|..+|.+++..+.-. ...+|...+.++|+++|+++.++ +.+|.+....|++++|+..++++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~--~~~~A~~~l~~AL~~dp~~~rA~-~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQA--MTDEVSLLLEQALQLEPYNEAAL-SLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC--CCHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHCcCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 6889999999999887554310 12478889999999999999999 57899999999999999999999999988433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=5.3e-08 Score=75.40 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhC-C-CChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNK--DLHQELKYIGEKIKEN-S-KNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~-P-~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
+.+.|.+.+..+|.+.++.++.++++.+... +..+++..++.+++.+ | ++..++|+++..+.++|+|++|+.++++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3344444444555555555555555555330 2445555555555555 4 4455555555555555555555555555
Q ss_pred HHHhCCCChHHhHHHHHHH
Q psy4772 202 ILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l 220 (235)
+++++|+|..|..-+..+-
T Consensus 97 lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 97 LLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHH
Confidence 5555555555554444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=9.1e-08 Score=74.06 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc---ccHHHHHHHHHHHHcC-C-CChHHHHHHHHHHHHhhHhHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE---KSERALALTADAITMN-P-ANYTVWQYRREILKALNKDLHQ 160 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~---~~~eAl~~~~~al~l~-P-~~~~aw~~r~~~l~~l~~~~ee 160 (235)
+.++.+.+.|.+.+..+|.+..+. ++.|+++...+ ..++++..++.+++.+ | ....++++++..+.+++ ++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~-F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQ-FEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-CHHH
Confidence 344455555666666666555665 55666665544 4456666666666666 5 45666666666666666 3666
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 161 ELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
|+.+++++|+++|.|.+|..-+..+-
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 66666666666666666665554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-07 Score=67.36 Aligned_cols=72 Identities=11% Similarity=-0.062 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 137 NPANYTVWQYRREILKALNK--DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|+++.+|..+|.++...+. ..++|...++++++++|+++.+++.+|.++...|+|.+|+..++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34455555555555433321 1244555555555555555555555555555555555555555555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-07 Score=66.83 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-------CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKEN-------SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-------P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
...+..|..+.+.+ +|..|+.++++|+++. +....++.++|.++.++|++++|+..+++|+.++|++..+..
T Consensus 6 ~dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34555666666666 4666666666666643 344566777777777777777777777777777777777777
Q ss_pred HHHHHHhhc
Q psy4772 215 HRQWVINLL 223 (235)
Q Consensus 215 ~r~~~l~~l 223 (235)
+++++-..+
T Consensus 85 n~~~~~~~~ 93 (104)
T 2v5f_A 85 NLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 776554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-07 Score=84.81 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=93.9
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCC---chh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----APKNE---SPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~---~aw 109 (235)
.|+|++|+.+++++|++ +|.-+..+.++|.++..+|+|+ +|+..+.++|.+ -|+|+ ..+
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~-----eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYE-----EASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 47899999999999987 5556788899999999999875 577777777754 45555 355
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc-----CCCCh---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM-----NPANY---TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l-----~P~~~---~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
+++|.++..+|++++|+..+++|+++ -|+++ .....++.++..+++ +.+|...|.++.+..-+|-..|
T Consensus 397 -~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~-~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 397 -MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM-FRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCc
Confidence 46889999999999999999999863 45554 455677778888884 8888888888766554444344
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=6.8e-07 Score=76.17 Aligned_cols=113 Identities=9% Similarity=-0.019 Sum_probs=94.8
Q ss_pred hcCCCchhHhhhHHHHHhh---c--CCC-CHHHHHHHHHHHHHHHHhCCC--CCchhhHHHHHHHhcc-----cccHHHH
Q psy4772 61 SHDVRNNSAWTQRYFVINH---T--TQF-TPEVIQREIDYCRDKIQIAPK--NESPWNYLRGAVVNAG-----EKSERAL 127 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~---~--~~~-~e~~~~~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~-----~~~~eAl 127 (235)
+++|+++++++-.|.+... . |.+ .-+...+|....+++++++|+ +..+|. .+|.++... |..++|.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~-~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWN-VLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-HHHHHHHHSCTTTTCCHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHH-HHHHHHHhCCCccCCCHHHHH
Confidence 3477788888888877754 2 222 235677899999999999999 778995 699999884 8999999
Q ss_pred HHHHHHHHcCCCC-hHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCC
Q psy4772 128 ALTADAITMNPAN-YTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 128 ~~~~~al~l~P~~-~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n 175 (235)
.+|+++|+++|+. ..+++..+..+... + +.+++...+++++..+|..
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~g-d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLN-NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCC
Confidence 9999999999975 99999999999885 6 5899999999999988874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.3e-06 Score=61.41 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=53.9
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcC-------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMN-------PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~-------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
+.+|..+...++++.|+..+++|+... +....++.+.|.++.++| ++++|+..++++++++|.+..+..+++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 456777777777777777777777753 345667777788888887 478888888888888888877777766
Q ss_pred HH
Q psy4772 184 II 185 (235)
Q Consensus 184 ~~ 185 (235)
.+
T Consensus 88 ~~ 89 (104)
T 2v5f_A 88 YF 89 (104)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-05 Score=71.76 Aligned_cols=164 Identities=8% Similarity=-0.071 Sum_probs=104.6
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
+.....|+++|...|..+..|...+..+...|+. ++|...|.+++.. |.+...| ...+... +.+. ....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~-----~~ar~i~erAi~~-P~~~~l~-~~y~~~~-e~~~---~~~~ 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQK-----EKAKKVVERGIEM-SDGMFLS-LYYGLVM-DEEA---VYGD 264 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHH-CCSSHHH-HHHHHHT-TCTH---HHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHhC-CCcHHHH-HHHHhhc-chhH---HHHH
Confidence 4467899999999999999999999988887764 4789999999999 9998888 4443331 1111 1111
Q ss_pred HHHHH----------HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-CchHHHHH
Q psy4772 130 TADAI----------TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELAL 198 (235)
Q Consensus 130 ~~~al----------~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-~~~~Al~~ 198 (235)
...+. ...+....+|..-.....+.+ ..+.|...++++ +..+..++.|...+.+-..++ +.+.|...
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~-~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR-GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC-CHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 11110 011222355666666555555 367777777777 433345666766666555555 47777777
Q ss_pred HHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
++.++..-|+++..|.-.......+|+.
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 7777777777776655444433444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.6e-07 Score=81.49 Aligned_cols=123 Identities=8% Similarity=-0.056 Sum_probs=83.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHc--------CCCC
Q psy4772 77 INHTTQFTPEVIQREIDYCRDKIQI-----APKNE---SPWNYLRGAVVNAGEKSERALALTADAITM--------NPAN 140 (235)
Q Consensus 77 l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~ 140 (235)
+..+|+| ++|+..+.++|.+ .|+|+ ..+ .++|.++..+|++++|+..++++|.+ .|.-
T Consensus 319 ~~~qg~~-----~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~-~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 319 ARSEGLY-----HEVVKLCRECLEKQEPVFADTNLYVLRLL-SIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHTTTCH-----HHHHHHHHHHHHHHTTTBCTTSHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHhCCCH-----HHHHHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 4455655 3677777777764 34444 345 35777888888888888888888864 3444
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-----CCCChH---HhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKE-----NSKNYQ---VWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-----~P~n~~---aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
...++++|.+|..+|+ +++|+..+++|+++ -|+++. ....++.+...++.+.+|...|.++.+.-
T Consensus 393 a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888884 88888888888763 344443 44566677777777888888777775533
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-06 Score=77.87 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=78.7
Q ss_pred hcccccHHHHHHHHHHHHc-----CCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--------CCCChHHhHH
Q psy4772 118 NAGEKSERALALTADAITM-----NPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKE--------NSKNYQVWRH 181 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l-----~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--------~P~n~~aw~~ 181 (235)
...|++++|+..++++|++ -|++ ...+++++.+|..+| +|++|+.++++++++ +|.-..++++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3467899999999999984 4555 457889999999999 499999999999974 4445568999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHh-----CCCChHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQ-----DAKNYHA 212 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~l-----dp~n~~a 212 (235)
+|.++..+|++++|+..+++|+++ -|+++..
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999999875 4666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00012 Score=66.67 Aligned_cols=165 Identities=7% Similarity=-0.042 Sum_probs=105.8
Q ss_pred HHHHHHHHHhHHhcCCC-chhHhhhHHHHHhhcC-CCCH-HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 49 FSDELSYIEGLISHDVR-NNSAWTQRYFVINHTT-QFTP-EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~-~~~a~~~~g~~l~~~~-~~~e-~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
+..|...++.+....|. +...|......-...+ ...+ ...++....|+++|...|..+..| +..+..+...|+.++
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW-~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVY-FFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 34455566666665444 4456644222211111 1221 123456689999999999999999 677788888899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-------------CCCChHHhHHHHHHHHHcCCc
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE-------------NSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-------------~P~n~~aw~~r~~~l~~l~~~ 192 (235)
|...+++++.. |.+...|...+... .+++. ++++.+. .+.....|...+....+.+..
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVM-DEEAV-------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHH-------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhc-chhHH-------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999999999 99998888654431 12211 2222211 122346788888888888889
Q ss_pred hHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 193 DEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 193 ~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+.|...|++| ...+...+.|...+.+-..++
T Consensus 303 ~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 303 ELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp HHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC
Confidence 9999999999 433345566655444433344
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=8.2e-06 Score=73.33 Aligned_cols=97 Identities=13% Similarity=0.011 Sum_probs=79.1
Q ss_pred HhcccccHHHHHHHHHHHHc-----CCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCCh---HHhH
Q psy4772 117 VNAGEKSERALALTADAITM-----NPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKEN-----SKNY---QVWR 180 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l-----~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-----P~n~---~aw~ 180 (235)
+...|++++|+..++++|.+ -|++ ...+++++.++..+| +|++|+.+++++|++. |.++ ..++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34568999999999999975 3444 457889999999999 4999999999999742 4444 5899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHh-----CCCChHHhH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQ-----DAKNYHAWQ 214 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~l-----dp~n~~aw~ 214 (235)
++|.++..+|++++|+..+++|+++ -|+++..-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999999999874 466665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.5e-06 Score=75.90 Aligned_cols=84 Identities=17% Similarity=0.037 Sum_probs=54.4
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCC---chh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----APKNE---SPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~---~aw 109 (235)
+|+|++|+.+++++|++ +|.-+..+.++|.++..+|+|+ +|+..+.++|.+ -|+|+ ..+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~-----eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWE-----GALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 46789999999999885 3344566677777777777664 566666666643 33333 344
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAIT 135 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~ 135 (235)
+++|.++..+|++++|+..+++|++
T Consensus 386 -~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 -LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3566666666666666666666665
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.02 E-value=6.8e-05 Score=55.97 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
..++++..+.++| +|++|+.+++.+|+.+|.|.+|..
T Consensus 76 ~lY~LAvg~yklg-~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 76 YVFYLAVGNYRLK-EYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3333444444444 244444444444444444444333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.4e-05 Score=56.54 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=87.2
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC-C-CCCchhhHHHHHHHhcccccHHH
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA-P-KNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~-p-~~~~aw~~~~g~il~~~~~~~eA 126 (235)
...+...|...+..++.+..+-++.+|++..... ...++++|..+..++..+ | ..-.+. |.+|..+.++|+|.+|
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~--~~d~~~GI~lLe~l~~~~~p~~~Rd~l-Y~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY--NDDIRKGIVLLEELLPKGSKEEQRDYV-FYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS--HHHHHHHHHHHHHHTTTSCHHHHHHHH-HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHhhhHHHH
Confidence 4566777788888899999999999999999654 356778999999999987 5 344555 7889999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
+.+++.+|++.|.+.+|..-+..|-.++.
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888777766553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.2e-05 Score=70.58 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=64.4
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCCc---hh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----APKNES---PW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~~---aw 109 (235)
.|+|++|+..++++|+. +|.-...+.++|.++..+|+++ +|+..+.++|.+ -|+++. .+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~-----eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE-----EALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 36889999999999976 4444677888888888888774 677777777753 355553 45
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM 136 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l 136 (235)
+++|.++..+|++++|+..+++|+++
T Consensus 375 -~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 -MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46888888888888888888888863
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0029 Score=48.02 Aligned_cols=89 Identities=8% Similarity=-0.064 Sum_probs=69.8
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
+-.+.+-++.+|+|..... ....+++|..+..++.-+|..-.-..|.++..+.++|+|.+|+.+.+.+|++.|.|.+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~--~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 6678888999999988764 34567899999999998886554333778888888889999999999999999998888
Q ss_pred HHHHHHHHHHh
Q psy4772 144 WQYRREILKAL 154 (235)
Q Consensus 144 w~~r~~~l~~l 154 (235)
..-+..|-.++
T Consensus 114 ~~Lk~~Ie~~i 124 (144)
T 1y8m_A 114 GALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0014 Score=49.72 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCC-CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 138 PANYTVWQYRREILKALNK--DLHQELKYIGEKIKENS-KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 138 P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P-~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
+-..++-++.+|++.+-.. +..+++..++.+++..| ..-...++++..+.++|+|.+|+.+++..++++|.|..|-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5566677777777766531 34567777777777777 45567777777788888888888888888888888877765
Q ss_pred HHHHHH
Q psy4772 215 HRQWVI 220 (235)
Q Consensus 215 ~r~~~l 220 (235)
-+..+-
T Consensus 116 Lk~~Ie 121 (144)
T 1y8m_A 116 LKSMVE 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0011 Score=50.95 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=80.7
Q ss_pred HhCCCCCchhhHHHHHHHhccccc------HHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 100 QIAPKNESPWNYLRGAVVNAGEKS------ERALALTADAITMNPAN--------YTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 100 ~l~p~~~~aw~~~~g~il~~~~~~------~eAl~~~~~al~l~P~~--------~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
.+.|++|..|. .-...+.+.|.. ++-++.|++|+..-|-. ...|..-+ .+..++ +.++|...|
T Consensus 7 ~~~p~~yd~W~-~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~-D~d~aR~vy 83 (161)
T 4h7y_A 7 MMMANNPEDWL-SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQ-EPDDARDYF 83 (161)
T ss_dssp ---CCSHHHHH-HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHH-CGGGCHHHH
T ss_pred eeCCCCHHHHH-HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhc-CHHHHHHHH
Confidence 45777777774 333555555665 67777888888766653 22333333 224454 578889999
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+.++..+.+....|...+..-.+.|+...|...+.+||.+-|+.......
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99988888888888888888899999999999999999999988776543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00099 Score=49.99 Aligned_cols=87 Identities=8% Similarity=-0.056 Sum_probs=68.1
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC-CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN-ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW 144 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~-~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw 144 (235)
.+.+-++.+|++.+... .....++|..+..++..+|.. -..+ |.++..+.++|+|.+|+.+.+.+|++.|+|.+|.
T Consensus 39 s~qt~F~yAw~Lv~S~~--~~d~~~GI~LLe~l~~~~~~~~Rd~L-YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEAESRRRECL-YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcchhHHHH-HHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 56778888888888754 345678888888888888744 4455 6788888888888888888888888888888888
Q ss_pred HHHHHHHHHhh
Q psy4772 145 QYRREILKALN 155 (235)
Q Consensus 145 ~~r~~~l~~l~ 155 (235)
.-+..|-.++.
T Consensus 116 ~Lk~~Ie~ki~ 126 (134)
T 3o48_A 116 ALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.021 Score=51.93 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=122.3
Q ss_pred hhhcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCC----HHHHHHHHHHHHHHHHhCCC-CCchhhHHHHHHHh
Q psy4772 45 KCNLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFT----PEVIQREIDYCRDKIQIAPK-NESPWNYLRGAVVN 118 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~----e~~~~~Al~~~~kal~l~p~-~~~aw~~~~g~il~ 118 (235)
..|++++|+++|++..+.. +-+...|..+-.++...++.. ...+++|++.|.......-. +...|+ .+-..+.
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn-~lI~~~~ 116 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT-NGARLAV 116 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH-HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH-HHHHHHH
Confidence 3589999999999988763 235556666655555555432 24577899999987765322 334554 3446778
Q ss_pred cccccHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC-CChHHhHHHHHHHHHcCCchHHH
Q psy4772 119 AGEKSERALALTADAITMN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKENS-KNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P-~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
+.|+.++|+..++...+.. +-+...|+..-..+-+.| ++++|...+++..+..- -+...|+.+..++.+.|+.++|.
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHH
Confidence 8899999999999988763 336677888888888888 59999999999887532 36778999999999999999999
Q ss_pred HHHHHHHH--hCCCC
Q psy4772 197 ALTAAILA--QDAKN 209 (235)
Q Consensus 197 ~~~~~ai~--ldp~n 209 (235)
+.+++.-+ ..|+.
T Consensus 196 ~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 196 KTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHTSSBCH
T ss_pred HHHHHHHHhCCCcCH
Confidence 99999866 44543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00089 Score=50.25 Aligned_cols=76 Identities=12% Similarity=-0.000 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCC-CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 142 TVWQYRREILKALNK--DLHQELKYIGEKIKENS-KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P-~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
.+-++.+|++.+-.. +..+++..++.+++.+| ..-..+++++..+.++|+|++|+.+++.+++++|.|..|-.-+.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344444444444321 22344445555554444 22344555555555555555555555555555555554443333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.025 Score=54.14 Aligned_cols=116 Identities=12% Similarity=0.201 Sum_probs=78.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--------hCCCCCc----------hh
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--------IAPKNES----------PW 109 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--------l~p~~~~----------aw 109 (235)
.++.|+.++++..+.+|.....+..............| -+|+.....+++ +.+.+.. ..
T Consensus 264 ~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~E---v~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKE---LDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 36889999999999999886544333222222222222 246666666553 2333321 22
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
...+..+...|+++-||.+-++|+..-|.....|..++.||..+| +|+.||-.+...
T Consensus 341 -~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-d~e~ALLtLNSc 397 (754)
T 4gns_B 341 -NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKE-EYEKALFAINSM 397 (754)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred -HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-cHHHHHHHHhcC
Confidence 123344556789999999999999999999999999999999999 599998766543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.34 Score=43.94 Aligned_cols=153 Identities=9% Similarity=0.056 Sum_probs=108.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC-CCchhhHHHHHHHhc---------ccccHHHHHHHHHHHHcC-C
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK-NESPWNYLRGAVVNA---------GEKSERALALTADAITMN-P 138 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~-~~~aw~~~~g~il~~---------~~~~~eAl~~~~~al~l~-P 138 (235)
+...-....+.|+. ++|++.|+...+..-. +...||..+ .++.. .+..++|++.|++..... +
T Consensus 29 l~~~id~c~k~G~~-----~~A~~lf~~M~~~Gv~pd~~tyn~Li-~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 29 LKQKLDMCSKKGDV-----LEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHTTTSCCH-----HHHHHHHHHHHHHTCCCCHHHHHHHH-HHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCH-----HHHHHHHHHHHHcCCCCCHhHHHHHH-HHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 33333445566654 5899999988875321 223343222 22222 234689999999888764 3
Q ss_pred CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC-ChHHhHHH
Q psy4772 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK-NYHAWQHR 216 (235)
Q Consensus 139 ~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~-n~~aw~~r 216 (235)
-+...|+..-..+-+.| .+++|+..+++..+.. +-+..+|+.+...+.+.|+.++|.+.++...+..-. |..+|..+
T Consensus 103 Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 103 PNEATFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 36678888888899999 5999999999988753 347889999999999999999999999999885432 55667777
Q ss_pred HHHHhhcCCcccc
Q psy4772 217 QWVINLLDDDDRG 229 (235)
Q Consensus 217 ~~~l~~l~~~~~~ 229 (235)
-.++...|+.+++
T Consensus 182 i~~~~~~g~~d~A 194 (501)
T 4g26_A 182 LKVSMDTKNADKV 194 (501)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHhhCCCHHHH
Confidence 6666666665554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.076 Score=40.69 Aligned_cols=120 Identities=10% Similarity=0.057 Sum_probs=89.7
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCC-CHHHHHHHHHHHHHHHHhCCCCCc-hhhHH------HHHHHhcccccHHHHHHHH
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNES-PWNYL------RGAVVNAGEKSERALALTA 131 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~-~e~~~~~Al~~~~kal~l~p~~~~-aw~~~------~g~il~~~~~~~eAl~~~~ 131 (235)
|-+.|.+++.|..-...+...|.- .+..+++-++.|.+|+..-|-... .| -+ +-..+...++.++|-+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w-rrYI~LWIrYA~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN-ESFARIQVRFAELKAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC-HHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH-HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 346899999999999888877753 234556777889998887765432 22 11 1123455688999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 132 DAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 132 ~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.++.+..+++.+|...+..-.+.| .+..|.+.+.++|..-|+.-+....
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqg-nl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQG-NVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhccCCCcHHHHHH
Confidence 999999999888888888888888 5999999999999999998665443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.06 Score=51.48 Aligned_cols=112 Identities=11% Similarity=0.173 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHH--Hhcc-cccHHHHHHHHHHHH--------cCCCCh----------HHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAV--VNAG-EKSERALALTADAIT--------MNPANY----------TVWQY 146 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~i--l~~~-~~~~eAl~~~~~al~--------l~P~~~----------~aw~~ 146 (235)
++.|++.+.+....+|...... .+..+ +... .+--+|+....+++. +.+.+. ..++.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~--~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY--KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 4579999999999999775433 22122 2222 334566666666653 233332 23444
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
-+..+..-| +++-|+.+-++++..-|..+..|+.++.+|..+|+++.|+-.+...
T Consensus 343 Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455555556 5999999999999999999999999999999999999999765554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.11 Score=47.43 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=63.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+|.+..... .+..|..+|.+|+.++|.+...++++|.+....|+.-+|+=+|-|++....-++.|+.++..++.
T Consensus 158 LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred cccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 333333333 36889999999999999999999999999999999999999999999988889999999998884
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.21 Score=45.49 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=46.8
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+|.+..-.+.+..|..+|.+|+.++|++..+++++|.+...-+ +.-+++-+|-+++....-.+.|+.++..++.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~-~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-DHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc-ccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4555555555666677777777777777777777776666655 35556666666666555566666666665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.16 Score=39.33 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=66.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh---------HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC---CCCchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS---------AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP---KNESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~---------a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p---~~~~aw~~~~ 113 (235)
.+.|+.|+...+.++.+...+++ ++...|.+++..++|. +|+..|.++|+..- ++..+.. ..
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyr-----rA~~~y~qALq~~k~l~k~~s~~~-~~ 106 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYR-----NAVSKYTMALQQKKALSKTSKVRP-ST 106 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHCC-----------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHH-----HHHHHHHHHHHHHHHHhcCCCccc-cc
Confidence 36789999999998888655554 7899999999999885 78888888876321 1111100 00
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
| ....+.. ... .+...+.-+..+.|+.++++ +.+|+..++.+
T Consensus 107 ~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 G----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ-DKDAIAILDGI 148 (167)
T ss_dssp ---------------------C-CCCHHHHHHHHHHHHHHTTC-HHHHHHHHHTS
T ss_pred c----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC-HHHHHHHHhcC
Confidence 0 0000000 011 24456777888999999995 89999988763
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.56 Score=36.30 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
..-+..+.++..++++.+|+...+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 5668889999999999999988664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.51 Score=41.28 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=48.6
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
.+...+..+| .+.+++..+.+++..+|-+-.+|..+..++.+.|+..+|+..|++.
T Consensus 176 ~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566677 4899999999999999999999999999999999999999888776
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.26 E-value=3.7 Score=32.20 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=65.3
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH--h---------------CCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK--E---------------NSK 174 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~--~---------------~P~ 174 (235)
..+.++.-.|.|..+|-.. .+-+-.++.++...|+..++ ++..|+.+++.+|+ . ||.
T Consensus 38 L~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klK-dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKK-DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 3566777777776666432 33445667778888888887 58888888888883 2 233
Q ss_pred ChH-HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 175 NYQ-VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 175 n~~-aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+-. -++.+|.++...|..+||+..+......+|-...
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 333 3445677788888899999998888888876544
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.81 E-value=4.4 Score=31.81 Aligned_cols=117 Identities=6% Similarity=0.029 Sum_probs=78.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
+.+|+.++-.-.-.+..+| +--...+++++..|+|. +++-.+ .+-+..++- +....|+..+.+|..
T Consensus 15 Y~dYdt~~fLsa~L~~~~~---eY~lL~~I~LyyngEY~-----R~Lf~L-----~~lNT~Ts~-YYk~LCy~klKdYkk 80 (242)
T 3kae_A 15 YRDYETAIFLAACLLPCKP---EYRMLMSIVLYLNGEYT-----RALFHL-----HKLNTCTSK-YYESLCYKKKKDYKK 80 (242)
T ss_dssp TTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHH-----HHHHHH-----HTCCBHHHH-HHHHHHHHHTTCHHH
T ss_pred cccccHHHHHHHHHccCCh---HHHhhhhhhhhhcchHh-----HHHHHH-----HhcchHHHH-HHHHHHHHHHHHHHH
Confidence 3566777654444444444 44456788999999874 343321 122333444 457899999999999
Q ss_pred HHHHHHHHHH-----------------cCCCChHHHH-HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 126 ALALTADAIT-----------------MNPANYTVWQ-YRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 126 Al~~~~~al~-----------------l~P~~~~aw~-~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
|+.+.+++|+ .||.+-.-.. -.|.++..+| .-+||+.++.+....+|-.+.
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g-~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG-YREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc-CHHHhhhHhhhhcCCccccch
Confidence 9999999993 3455655444 4588888888 589999999999888875443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.09 E-value=3.1 Score=34.66 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHhhHhHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW-QYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw-~~r~~~l~~l~~~~eeal~~~~ 166 (235)
+++|++.+...++.+|.+...=. .+-.++.-.|+++.|++..+.+.+++|+....- .+|..|.-..-+ .+ -+-.
T Consensus 13 L~~al~~~~~~VR~~P~da~~R~-~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R--~~--vfaG 87 (273)
T 1zbp_A 13 LQQALELLIEAIKASPKDASLRS-SFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR--KD--FAQG 87 (273)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--HH--HTTS
T ss_pred HHHHHHHHHHHHHhCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--HH--HHcC
Confidence 45677777888888888876542 344666777888888888888888888876654 334433322211 00 0000
Q ss_pred HHHHhCCCChHHhHH---HHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 167 EKIKENSKNYQVWRH---RQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 167 ~al~~~P~n~~aw~~---r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+..=.-+..+..|.. .+......|+.++|...-..|++.-|...-
T Consensus 88 ~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 88 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 000112233334443 345556678888888888888887765543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.98 E-value=2.4 Score=35.32 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=29.1
Q ss_pred cccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+.|..++++......++.+|.+...-.....+|--.| +|+.|+.=++.+.+++|..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGG
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchh
Confidence 3445555555555555555555555444444444445 3555555555555555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.16 E-value=5.6 Score=39.60 Aligned_cols=102 Identities=8% Similarity=-0.032 Sum_probs=64.8
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc-----------------------CCCChHHHHHHHHHHHH
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM-----------------------NPANYTVWQYRREILKA 153 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-----------------------~P~~~~aw~~r~~~l~~ 153 (235)
..+..-|.++..- |.+|.++...|++++|..+|.++..- ....+.-+.+...++++
T Consensus 833 ~l~~~~~~~~~~~-yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~ 911 (1139)
T 4fhn_B 833 QLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE 911 (1139)
T ss_dssp HHHHHSCCCHHHH-HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred HHhhhccCCcHHH-HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH
Confidence 3455667776654 78899999999999999999876321 11112334455556666
Q ss_pred hhHhHHHHHHHHHHHHHhCCCChH-----HhHHHHHHHHHcCCchHHHHHHH
Q psy4772 154 LNKDLHQELKYIGEKIKENSKNYQ-----VWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 154 l~~~~eeal~~~~~al~~~P~n~~-----aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
-+ .++-++++...||+.-+.+.. .|...=.....+|+|++|...+-
T Consensus 912 ~~-~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 912 ES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TS-CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cC-CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 55 467777777777775543322 45555555666777777766554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.51 E-value=2.9 Score=36.33 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=49.8
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
.+.......|++.+++....+++..+|-+-.+|..+-.++...|+ ..+|+..|+++-+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR-QSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 345667778999999999999999999999999999999999995 7999998887533
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.59 E-value=0.83 Score=41.70 Aligned_cols=138 Identities=9% Similarity=0.037 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHH-----------HhCCCCCchhhHHHHHHHhcccccHHHHH--------------HHHHHH-HcCCCC
Q psy4772 87 VIQREIDYCRDKI-----------QIAPKNESPWNYLRGAVVNAGEKSERALA--------------LTADAI-TMNPAN 140 (235)
Q Consensus 87 ~~~~Al~~~~kal-----------~l~p~~~~aw~~~~g~il~~~~~~~eAl~--------------~~~~al-~l~P~~ 140 (235)
.+++|.++..+++ .+|+=....| |..+.++...|+..+.+. .+..+. +.|+.-
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~-fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 151 ELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLW-FYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH-HHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 3445665554443 2355556677 445566666666544322 222221 233332
Q ss_pred -hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-------hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 141 -YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN-------YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 141 -~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n-------~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
...++-.-..|..-+ .++.|..++.++. +|.+ ..-.++.|.+..-.++|.+|.+++..|+..-|.+..+
T Consensus 230 qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 230 KAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred hHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 334444455555555 5899999999985 6644 2345677899999999999999999999988877654
Q ss_pred hHHHHHH-------HhhcCCccc
Q psy4772 213 WQHRQWV-------INLLDDDDR 228 (235)
Q Consensus 213 w~~r~~~-------l~~l~~~~~ 228 (235)
-.++..+ -.++|..|+
T Consensus 307 ~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 307 LGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhHHHHHHHHHHhHHhhcCCCCC
Confidence 4333222 256788764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=82.22 E-value=15 Score=33.86 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=23.0
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
..++...| ..+|......++++.|..+|.++
T Consensus 677 ~~~~~~~W-~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 677 DESAEMKW-RALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCCCHHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcHhHH-HHHHHHHHHcCCHHHHHHHHHHc
Confidence 34566778 46788888888888888888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 235 | ||||
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-15 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-14 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-14 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-05 |
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.4 bits (171), Expect = 7e-15
Identities = 71/136 (52%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 35 QIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 153
Query: 218 WVINLLDDDDRGVLEY 233
WVI D +
Sbjct: 154 WVIQEFKLWDNELQYV 169
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 3e-14
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 9 DNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNS 68
D+ +V Y++R EW D+ P+PQ+DGP PVV I YS K F D Y ++ D
Sbjct: 5 DSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDK---FRDVYDYFRAVLQRD----- 56
Query: 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALA 128
E +R RD I++ N + W++ R + + + +
Sbjct: 57 -----------------ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMN 99
Query: 129 LTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188
I P NY VW +RR +++ L + ++ KNY W+HRQ +++
Sbjct: 100 YITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQE 158
Query: 189 MGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225
D EL +L +D +N W R +VI+
Sbjct: 159 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.3 bits (168), Expect = 2e-14
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKY 164
AGE E L LT+ + NP T+W RRE+L+ L + + EL +
Sbjct: 36 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGF 95
Query: 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVINL 222
+ ++ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ 155
Query: 223 LDDDDRGVLEY 233
L +
Sbjct: 156 AAVAPAEELAF 166
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 11/159 (6%)
Query: 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS---------ERALALTADAITM 136
E+ + ++ + P + WN R + + + + L + +
Sbjct: 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 102
Query: 137 NPANYTVWQYRREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM-GEPDE 194
NP +Y W +R +L L + + +EL+ ++ + +N+ W +R+ + P E
Sbjct: 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162
Query: 195 ELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233
ELA T +++ ++ NY +W +R ++ L +
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.8 bits (95), Expect = 5e-05
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 4/143 (2%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
++ + I+ +PK+ S + ++ ERA +I + P R ++
Sbjct: 16 LELLIEAIKASPKDASLRSSF-IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
KA K+ ++ + + ++ L I +
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 212 AWQHRQWVINLLDDDDR--GVLE 232
+ ++ D DDR G +E
Sbjct: 135 LANDTSFS-DVRDIDDRLGGYIE 156
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 235 | |||
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 100.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.76 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.76 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.63 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.63 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.63 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.6 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.6 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.57 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.53 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.44 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.07 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.65 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.59 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.28 |
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-37 Score=268.91 Aligned_cols=211 Identities=26% Similarity=0.502 Sum_probs=195.4
Q ss_pred cccccccccchhhhhccCCCCCCCCCCchhHhhhhhhh--------------hcHHHHHHHHHhHHhcCCCchhHhhhHH
Q psy4772 9 DNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKC--------------NLFSDELSYIEGLISHDVRNNSAWTQRY 74 (235)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--------------~~~~~Al~~~~~aL~~~P~~~~a~~~~g 74 (235)
|.++|+.|..+++|+|++|++++.+.++++.|.|.+.+ +.+++|+.++++||+++|+++.+|++||
T Consensus 5 ~~~~~~~y~~~~~~~d~~p~~~~~~~~~~~~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~ 84 (315)
T d2h6fa1 5 DSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 84 (315)
T ss_dssp TSTTCCCGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcceeccCCccccccCccCcCCCCCcccccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 56899999999999999999999999998888776542 3569999999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Q psy4772 75 FVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL 154 (235)
Q Consensus 75 ~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l 154 (235)
.++..+|+. +++|+.+++++|+++|+++.+| +.+|.++..+|++++|+.+++++++++|+++.+|++||+++..+
T Consensus 85 ~~l~~l~~~----~~eal~~~~~al~~~p~~~~a~-~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~ 159 (315)
T d2h6fa1 85 VLLKSLQKD----LHEEMNYITAIIEEQPKNYQVW-HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF 159 (315)
T ss_dssp HHHHHTTCC----HHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcC----HHHHHHHHHHHHHHHHhhhhHH-HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence 999988752 3479999999999999999999 57999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC------chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 155 NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE------PDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 155 ~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
+ .+++|+.+++++|+++|.|+.+|++||.++..+++ +++|++.+.++|.++|+|.++|+++|.++...|.
T Consensus 160 ~-~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~ 235 (315)
T d2h6fa1 160 K-LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL 235 (315)
T ss_dssp T-CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG
T ss_pred H-hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcCh
Confidence 9 49999999999999999999999999999999887 4799999999999999999999999999866553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.4e-29 Score=217.90 Aligned_cols=161 Identities=25% Similarity=0.464 Sum_probs=153.0
Q ss_pred HHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc-cHHHHHHHHHHHHcC
Q psy4772 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-SERALALTADAITMN 137 (235)
Q Consensus 59 aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-~~eAl~~~~~al~l~ 137 (235)
+|..+|+..+++..+|.++...++++ +|++.+++||+++|.++++| +.+|.++..+|+ +++|+.+++++|+++
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~-----~Al~~~~~ai~lnP~~~~a~-~~r~~~l~~l~~~~~eal~~~~~al~~~ 108 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSE-----RAFKLTRDAIELNAANYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEEQ 108 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHHCCCChHHH-HHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 57789999999999999999998874 89999999999999999999 479999999876 899999999999999
Q ss_pred CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 138 PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 138 P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
|+++.+|++||.++..+| .+++|+.+++++|+++|+|+++|+++|+++..+|++++|+++++++|++||+|.++|++||
T Consensus 109 p~~~~a~~~~~~~~~~l~-~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~ 187 (315)
T d2h6fa1 109 PKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 187 (315)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhhhhHHHHHhHHHHhhc-cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 999999999999999999 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCc
Q psy4772 218 WVINLLDDD 226 (235)
Q Consensus 218 ~~l~~l~~~ 226 (235)
.++..+++.
T Consensus 188 ~~l~~~~~~ 196 (315)
T d2h6fa1 188 FVISNTTGY 196 (315)
T ss_dssp HHHHHTTCS
T ss_pred HHHHHcccc
Confidence 999877764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-25 Score=188.79 Aligned_cols=178 Identities=11% Similarity=0.107 Sum_probs=147.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----------------------------HHHHHHHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----------------------------EVIQREIDYCR 96 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----------------------------~~~~~Al~~~~ 96 (235)
.+.+++|+..++++|+.+|+++.+|..+|.++...|++++ +.+++|+..|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 261 (388)
T d1w3ba_ 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3667788888888888888888888888888877777763 13567778888
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
++++++|+++.+| +.+|.++...|++++|+..+++++...|.+..++..++.++..+| ++++|+.+++++++++|+++
T Consensus 262 ~al~~~p~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~ 339 (388)
T d1w3ba_ 262 RAIELQPHFPDAY-CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFA 339 (388)
T ss_dssp HHHHTCSSCHHHH-HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCH
Confidence 8888888888877 467778888888888888888888888888888888888888887 48999999999999999999
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.+|+++|.++..+|++++|+.+|++|++++|+++.+|.++|.++..+|+
T Consensus 340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999887775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.3e-25 Score=186.83 Aligned_cols=182 Identities=11% Similarity=0.131 Sum_probs=163.5
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|+++|+.+|+++.+|+.+|.++..+|+++ +|+..|.++++++|++..+| +.+|.++...|+++
T Consensus 31 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 31 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL-----LAISALRRCLELKPDNQTAL-MALAVSFTNESLQR 104 (323)
T ss_dssp HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-----HHHHHHHhhhcccccccccc-cccccccccccccc
Confidence 3589999999999999999999999999999999999874 79999999999999999999 68999998888887
Q ss_pred HHHHHHHHHHH-------------------------------------------------cCCCC--hHHHHHHHHHHHH
Q psy4772 125 RALALTADAIT-------------------------------------------------MNPAN--YTVWQYRREILKA 153 (235)
Q Consensus 125 eAl~~~~~al~-------------------------------------------------l~P~~--~~aw~~r~~~l~~ 153 (235)
+|+..+++++. ++|.+ +.+|..+|.++..
T Consensus 105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 77776666554 44443 4567788999999
Q ss_pred hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 154 LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 154 l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+| ++++|+.++++++..+|+++.+|+.+|.++..+|++++|+++++++++++|+++.+|+++|.++..+|+..+|.-.|
T Consensus 185 ~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 263 (323)
T d1fcha_ 185 SG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263 (323)
T ss_dssp TT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HH-HHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999999987776544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.8e-23 Score=175.57 Aligned_cols=180 Identities=12% Similarity=0.156 Sum_probs=161.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH----------------------------------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------------- 85 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------------- 85 (235)
.|++++|+.+|+++++++|+++.+|..+|.++..+|++.+
T Consensus 66 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (323)
T d1fcha_ 66 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 145 (323)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHH
Confidence 5899999999999999999999999999999999987542
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCCch--hhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHH
Q psy4772 86 ----EVIQREIDYCRDKIQIAPKNESP--WNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLH 159 (235)
Q Consensus 86 ----~~~~~Al~~~~kal~l~p~~~~a--w~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~e 159 (235)
..+.+|+..|.+++.++|.+..+ | +.+|.++...|++++|+..+++++..+|+++.+|+.+|.++..+| +++
T Consensus 146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~ 223 (323)
T d1fcha_ 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN-QSE 223 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcccccccc-hhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccc-cch
Confidence 24677889999999999987654 5 468999999999999999999999999999999999999999999 499
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH-----------hHHHHHHHhhcCCcc
Q psy4772 160 QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA-----------WQHRQWVINLLDDDD 227 (235)
Q Consensus 160 eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a-----------w~~r~~~l~~l~~~~ 227 (235)
+|+.+|+++++++|+++.+|+++|.++..+|++++|+..|++||+++|++..+ |.+++.++..+|+.+
T Consensus 224 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d 302 (323)
T d1fcha_ 224 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 302 (323)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999998864 566777887777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=2.8e-23 Score=177.83 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=160.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.+++|+.+++++|+.+|+++.+|+++|+++...++.. +++|+..+.++++++|++..+|.+..|.++...+.+++|
T Consensus 87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN---WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc---HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 56899999999999999999999999999999998754 458999999999999999999977788999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH--------------------------------------------------
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK-------------------------------------------------- 156 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~-------------------------------------------------- 156 (235)
+..++++++++|.++.+|+++|.++..+|+
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~ 243 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF 243 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhh
Confidence 999999999999999999999999999862
Q ss_pred -------------hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 157 -------------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 157 -------------~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
.+.+++..+.++++.+|.++.+|..+|.++..+|++++|++++++|+++||.+...|.+++..+.
T Consensus 244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 244 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 36788899999999999999999999999999999999999999999999999999999988874
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=5.1e-23 Score=168.68 Aligned_cols=173 Identities=10% Similarity=0.020 Sum_probs=150.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++|+++|+++.+|+++|.++..+|+++ +|+..|++++.++|+++.+| +.+|.++..+|++++
T Consensus 50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~g~~~~ 123 (259)
T d1xnfa_ 50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD-----AAYEAFDSVLELDPTYNYAH-LNRGIALYYGGRDKL 123 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCTHHH-HHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHH-----HhhhhhhHHHHHHhhhhhhH-HHHHHHHHHHhhHHH
Confidence 589999999999999999999999999999999999875 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhH-----------------------------------hHHHHHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNK-----------------------------------DLHQELKYIGEKIK 170 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~-----------------------------------~~eeal~~~~~al~ 170 (235)
|+..++++++++|.+..+....+.+...++. .++.+...+...+.
T Consensus 124 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (259)
T d1xnfa_ 124 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 203 (259)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988888877766652 13445555566667
Q ss_pred hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 171 ~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
..|....+|+++|.++...|++++|+.+|++||..+|++...+.+-..-|..++
T Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~a~~~L~~l~ 257 (259)
T d1xnfa_ 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 778888999999999999999999999999999999999876655444445444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-21 Score=165.83 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=124.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH----------------------------------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------------- 85 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------------- 85 (235)
.|++++|+.+|+++|+++|+++.+|..+|.++..+|++++
T Consensus 46 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (388)
T d1w3ba_ 46 CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999999999999999999987542
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHhCCCCCch
Q psy4772 86 ---------------------------------------------------------EVIQREIDYCRDKIQIAPKNESP 108 (235)
Q Consensus 86 ---------------------------------------------------------~~~~~Al~~~~kal~l~p~~~~a 108 (235)
..+++|+..+.++++++|+++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T d1w3ba_ 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHH
Confidence 12356777777777777777777
Q ss_pred hhHHHHHHHhcccc----------------------------------cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Q psy4772 109 WNYLRGAVVNAGEK----------------------------------SERALALTADAITMNPANYTVWQYRREILKAL 154 (235)
Q Consensus 109 w~~~~g~il~~~~~----------------------------------~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l 154 (235)
| ..+|.++...|+ +++|+..++++++++|+++.+|..+|.++..+
T Consensus 206 ~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 206 Y-INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp H-HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred H-HHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 6 355555554444 44455555555555555555555555555555
Q ss_pred hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 155 NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 155 ~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
| .+++|+..+++++...|.+..++..++.++...|++++|+..++++++++|+++.+|.++|.++..+|+..+|.-
T Consensus 285 ~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 285 G-SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp S-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred C-CHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5 255555555555555555555555555556666666777777777777777777777777777777777666543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=9e-22 Score=168.27 Aligned_cols=143 Identities=20% Similarity=0.344 Sum_probs=127.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC-----HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT-----PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~-----e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
..++|+.+++++|+++|+++++|..|+.++..++... ...+++|+.++.++++.+|+++.+| +.+|.++...++
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~-~~~~~~~~~~~~ 122 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW-HHRCWLLSRLPE 122 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHH-HHhhHHHHHhcc
Confidence 3489999999999999999999999999988776543 2457899999999999999999999 579999888775
Q ss_pred --cHHHHHHHHHHHHcCCCChHHHHHH-HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCc
Q psy4772 123 --SERALALTADAITMNPANYTVWQYR-REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 123 --~~eAl~~~~~al~l~P~~~~aw~~r-~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~ 192 (235)
+++|+..++++++++|++..+|.++ |.++...+ .+++|+.+++++++++|.++.+|+++|.++..+|++
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence 7999999999999999999998755 56666667 599999999999999999999999999999998863
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=7e-22 Score=161.80 Aligned_cols=179 Identities=9% Similarity=-0.040 Sum_probs=153.9
Q ss_pred cHHHHHHHHHhHHhc----CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 48 LFSDELSYIEGLISH----DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~----~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
..+.|+..+++++.. +|..+.+|+.+|.++..+|+++ +|+..|.++|+++|+++.+| +.+|.++..+|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~-----~A~~~~~~al~l~p~~~~a~-~~lg~~~~~~g~~ 87 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA-----LARNDFSQALAIRPDMPEVF-NYLGIYLTQAGNF 87 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHhhccCCCCHHHH-hhhchHHHHHHHH
Confidence 457888888888875 5567789999999999999875 79999999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC------------
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE------------ 191 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~------------ 191 (235)
++|+.+|+++++++|+++.+|.++|.++..+|+ +++|+..++++++++|.+..+...++......+.
T Consensus 88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh-HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999995 9999999999999999999988887776666553
Q ss_pred ------------------------chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 192 ------------------------PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 192 ------------------------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
...+...+..++...|....+|+++|.++..+|+..+|.-.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 232 (259)
T d1xnfa_ 167 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 232 (259)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 234444555666777888888999999988888887765443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=7e-19 Score=129.35 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=96.7
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
.+|..+...|++++|+.+|+++|.++|.++.+|.++|.++..+| ++++|+..++++++++|+++.+|+++|.++..+|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccc-cccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 47888888999999999999999999999999999999999998 48999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+++|+.++++++.++|+++.++..++.+-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999999888887653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.6e-18 Score=126.24 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=100.7
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
-+..+|..++..|+|+ +|+..|.++|+++|.++.+| +.+|.++..+|++++|+..++++++++|+++.+|+++|
T Consensus 5 ~l~~~g~~~~~~g~~~-----eAi~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 78 (117)
T d1elwa_ 5 ELKEKGNKALSVGNID-----DALQCYSEAIKLDPHNHVLY-SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCcchhhh-hcccccccccccccccchhhhhHHHhccchhhHHHHHH
Confidence 3567899999999875 79999999999999999999 58999999999999999999999999999999999999
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.++..+| ++++|+.+++++++++|+++.++..++.+-
T Consensus 79 ~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 79 AALEFLN-RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999 599999999999999999999999887664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.9e-18 Score=134.42 Aligned_cols=139 Identities=9% Similarity=0.014 Sum_probs=121.1
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRRE 149 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~ 149 (235)
++++|.++...|+|+ +|++.|.+ +.|.++.+| +++|.++..+|++++|+.+|+++|+++|+++.+|++||.
T Consensus 8 l~~~g~~~~~~~d~~-----~Al~~~~~---i~~~~~~~~-~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~ 78 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWK-----GALDAFSA---VQDPHSRIC-FNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 78 (192)
T ss_dssp HHHHHHHHHHTTCHH-----HHHHHHHT---SSSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHH-----HHHHHHHh---cCCCCHHHH-HHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 457899999998874 78888876 466778899 689999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHhCCCCh----------------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 150 ILKALNKDLHQELKYIGEKIKENSKNY----------------QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 150 ~l~~l~~~~eeal~~~~~al~~~P~n~----------------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
++..+| ++++|+..|++++...|.|. .+++++|.++..+|++++|++.+++|+.++|...+..
T Consensus 79 ~~~~~g-~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~ 157 (192)
T d1hh8a_ 79 LYYQTE-KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 157 (192)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred HHHhhc-cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHH
Confidence 999999 49999999999998877653 5788999999999999999999999999999877766
Q ss_pred HHHHH
Q psy4772 214 QHRQW 218 (235)
Q Consensus 214 ~~r~~ 218 (235)
...+.
T Consensus 158 ~~~Al 162 (192)
T d1hh8a_ 158 IDKAM 162 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.7e-18 Score=129.94 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=72.0
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
.+..+|..++..|+|+ +|+..|.++|+++|+++.+| +.+|.++..+|++++|+.+|+++|+++|++..+|+.+|
T Consensus 12 ~l~~~gn~~~~~~~y~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g 85 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYE-----NAIKFYSQAIELNPSNAIYY-GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH-----HHHHHhhhccccchhhhhhh-hhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHH
Confidence 4556666666666653 56666666666666666666 45666666666666666666666666666666666666
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.++..+| ++++|+.+++++++++|.+..++..++.+.
T Consensus 86 ~~~~~~g-~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 86 ASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 6666666 366666666666666666666666655443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.5e-17 Score=127.96 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=89.9
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
.+|..+...|++++|+.+|++++.++|++..+|+++|.++..+| ++++|+.+|+++|+++|++..+|+.+|.++..+|+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcc-ccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 56788888888888888888888888888888888888888888 48888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+++|+.++++++.++|.+..++..++.+...+
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 125 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIV 125 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88888888888888888888877776665443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=5.8e-18 Score=133.30 Aligned_cols=117 Identities=7% Similarity=0.008 Sum_probs=95.9
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
+++.+...|..++..|+|+ +|+..|.++|.++|+++.+| +++|.++..+|++++|+.+|+++|.++|+++.+|+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~-----~Ai~~~~kal~~~p~~~~~~-~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~ 76 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYP-----EAAACYGRAITRNPLVAVYY-TNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHH
Confidence 4566778888888888874 78888888888888888888 57888888888888888888888888888888888
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
++|.++..+| ++++|+.+++++++++|.+...|...+......
T Consensus 77 ~lg~~~~~l~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 77 FLGQCQLEME-SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8888888888 488888888888888887776666555544443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=8.9e-17 Score=127.87 Aligned_cols=126 Identities=10% Similarity=0.009 Sum_probs=112.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.++|++|+..|+++ .|.++.+|+++|.++..+|+++ +|+..|+++|+++|+++.+| +++|.++..+|++++
T Consensus 18 ~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~-----~A~~~~~kAl~ldp~~~~a~-~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 18 KKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMT-----EAEKAFTRSINRDKHLAVAY-FQRGMLYYQTEKYDL 88 (192)
T ss_dssp TTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCch-----hHHHHHHHHHHHhhhhhhhH-HHHHHHHHhhccHHH
Confidence 47899999999874 6778899999999999999875 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCC----------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 126 ALALTADAITMNPAN----------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 126 Al~~~~~al~l~P~~----------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
|+..|++++...|.+ ..+++++|.++..+| .+++|+..+++++++.|...+....
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~-~~~~A~~~l~~A~~~~~~~~~~~~~ 159 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSMKSEPRHSKID 159 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcchHHHH
Confidence 999999999887654 367899999999999 5999999999999999986554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=7.4e-18 Score=132.69 Aligned_cols=102 Identities=11% Similarity=0.117 Sum_probs=72.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+|++|+..|++||.++|.++.+|+++|.++..+|+++ +|+..|.++|+++|+++.+| +++|.++..+|++++|
T Consensus 18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~-----~Ai~~~~~al~l~p~~~~a~-~~lg~~~~~l~~~~~A 91 (201)
T d2c2la1 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE-----QALADCRRALELDGQSVKAH-FFLGQCQLEMESYDEA 91 (201)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHTTSCTTCHHHH-HHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhh-----hhhHHHHHHHHhCCCcHHHH-HHHHHHHHHCCCHHHH
Confidence 66777777777777777777777777777777777653 67777777777777777777 5677777777777777
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKAL 154 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l 154 (235)
+.+++++++++|.+...+.........+
T Consensus 92 ~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 92 IANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 7777777777776665555444443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.1e-18 Score=154.09 Aligned_cols=134 Identities=10% Similarity=-0.034 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
.++.|+..+.+++.++|.+..+| ..+|.++...|+.++|+..+.+++.++| ..++.++|.++...+ ++++|+.+|+
T Consensus 101 ~Y~~ai~~l~~~~~l~~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~-~~~~A~~~y~ 176 (497)
T d1ya0a1 101 FYTQLLQELCTVFNVDLPCRVKS-SQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRN-QTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHTC--------------------------------CCHHHHHHH--HHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhhHHHH-HHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcc-cHHHHHHHHH
Confidence 35566667777778999999999 5899999999999999999999998876 478999999999999 5999999999
Q ss_pred HHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 167 EKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+|++++|++..+|+++|.++...|++.+|+.+|.+||.++|.++.|+.+++.++....
T Consensus 177 ~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999985443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.68 E-value=9.3e-17 Score=122.37 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=76.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~ 119 (235)
+++.|++|+..|++||+++|+++++|+++|.++..++++.. ..+++|+..|+++|+++|+++.+| +++|.++..
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~-~~lG~~y~~ 87 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV-WCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHH-hhHHHHHHH
Confidence 46788999999999999999999999999999988766532 234455555555555555555555 345555544
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~ 194 (235)
+|+.. +...... +.+++|+.+|+++++++|+|..++..++.+....+.+.+
T Consensus 88 ~g~~~-----------------------~~~~~~~-~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 88 FAFLT-----------------------PDETEAK-HNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHC-----------------------CCHHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred cccch-----------------------hhHHHHH-HhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33210 0000000 125666666666666666666666666665555444444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.66 E-value=1.3e-15 Score=116.58 Aligned_cols=131 Identities=8% Similarity=-0.005 Sum_probs=97.8
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
.+...|..++..|+|. +|+..|.++|.+-|.....- ... .......+ ...++.++|
T Consensus 19 ~~~~~G~~~f~~~~y~-----~A~~~Y~~al~~~~~~~~~~-~~~-------------~~~~~~~~-----~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEIN-----EAIVKYKEALDFFIHTEEWD-DQI-------------LLDKKKNI-----EISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHH-----HHHHHHHHHHHTTTTCTTCC-CHH-------------HHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCcchhhhh-hHH-------------HHHhhhhH-----HHHHHhhHH
Confidence 4566666666666553 56666666666555443221 000 00000111 124778999
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
.++.++|+ +++|+.+++++|+++|.+..+|+.+|.++..+|++++|+.+|++++.++|+|..++..++.+...++
T Consensus 75 ~~~~~l~~-~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 75 TCYNKNKD-YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999994 9999999999999999999999999999999999999999999999999999999999988876553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=2.9e-16 Score=119.52 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=89.5
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH---------hHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK---------DLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~---------~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+.+++++++|+..|+++++++|+++.+++++|.++..+++ .+++|+..|+++|+++|+++.+|+++|.++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 34556778888888888888888888888888888875532 368889999999999999999999999888
Q ss_pred HHcCC-----------chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 187 EWMGE-----------PDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 187 ~~l~~-----------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
..+|+ +.+|+++|++|++++|+|..++..++.+...++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~ 134 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 134 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence 77654 689999999999999999999999988875443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.65 E-value=4.1e-16 Score=113.39 Aligned_cols=92 Identities=11% Similarity=-0.016 Sum_probs=79.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.+|.++...|++++|+.++++++.++|+++.+|+++|.++..++ ++++|+.+++++++++|.+..+|+.+|.++..+|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhh-hHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 567888888888888888888888888888888888888888888 4888888888888888888888888888888888
Q ss_pred CchHHHHHHHHHH
Q psy4772 191 EPDEELALTAAIL 203 (235)
Q Consensus 191 ~~~~Al~~~~~ai 203 (235)
++++|+++++++|
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888888875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.5e-15 Score=118.27 Aligned_cols=132 Identities=10% Similarity=-0.037 Sum_probs=87.2
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
+..+..+|..++..|+|+ +|+..|.++|...|.....+. ........ + ...++.+
T Consensus 13 a~~l~~~G~~~~~~~~~~-----~Ai~~y~~al~~~~~~~~~~~-~~~~~~~~----------~---------~~~~~~n 67 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYK-----QALLQYKKIVSWLEYESSFSN-EEAQKAQA----------L---------RLASHLN 67 (170)
T ss_dssp HHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHTTTCCCCCS-HHHHHHHH----------H---------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHhhhccccch-HHHhhhch----------h---------HHHHHHH
Confidence 456778888888888874 688889988888887776542 11111000 0 0124566
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
++.|+.++| ++++|+.+++++|+++|.++.+|+.+|.++..+|++++|+.+|++++.++|+|..+...++.+...++
T Consensus 68 la~~y~k~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 68 LAMCHLKLQ-AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 677777776 36777777777777777777777777777777777777777777777777777777666666654433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=7.5e-16 Score=114.09 Aligned_cols=110 Identities=10% Similarity=-0.009 Sum_probs=87.4
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH---hhHhHHHHHHHHHHHHHhCCCCh--HHhHHHHHHHHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKA---LNKDLHQELKYIGEKIKENSKNY--QVWRHRQIIVEW 188 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~---l~~~~eeal~~~~~al~~~P~n~--~aw~~r~~~l~~ 188 (235)
...+...+++++|.+.|+++|.++|.++.++++.|+++.+ .+ ++.+|+..++++++.+|++. .+|+++|.++..
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~-d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND-DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH-HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 3455667788888888888888888888888888888864 44 46778888888888887664 478888888888
Q ss_pred cCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 189 MGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 189 l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+|++++|+.+++++++++|+|..|...++.+.+.++
T Consensus 85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 888888888888888888888888888887775544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.63 E-value=7.9e-16 Score=119.35 Aligned_cols=131 Identities=12% Similarity=0.025 Sum_probs=107.4
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRRE 149 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~ 149 (235)
...+|..+...|+|. +|+..|.++|++.+.. .+.......+.++|....++.++|.
T Consensus 30 ~~~~~~~~~~~~~y~-----~Ai~~y~~al~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~nla~ 85 (169)
T d1ihga1 30 LKNIGNTFFKSQNWE-----MAIKKYTKVLRYVEGS-------------------RAAAEDADGAKLQPVALSCVLNIGA 85 (169)
T ss_dssp HHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHH-------------------HHHSCHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHH-----HHHHHHHHHHHhhhhh-------------------hhhhhhHHHHHhChhhHHHHHHHHH
Confidence 568888888888764 6888888887643211 1111123445677888999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 150 ILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 150 ~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
++.++| ++++|+.+|+++|+++|+++.+|+.+|.++..+|++++|+..|+++++++|+|..+...++.+...+..
T Consensus 86 ~~~~~~-~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 86 CKLKMS-DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhc-ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999 599999999999999999999999999999999999999999999999999999999998888765543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=8.8e-16 Score=113.71 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=87.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC--chhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE--SPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~--~aw~~~~g~il~~~~~~ 123 (235)
.+++++|.+.|+++|.++|.++.+++++|+++...++. +.+++|+..|.+++..+|... .+| +.+|.++..+|++
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~--~d~~~Ai~~l~~~l~~~~~~~~~~~~-~~Lg~~y~~~g~~ 88 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN--DDIRKGIVLLEELLPKGSKEEQRDYV-FYLAVGNYRLKEY 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH--HHHHHHHHHHHHHTTTSCHHHHHHHH-HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhccCCchHHHHH-HHHHHHHHHHhhh
Confidence 35778888888888888888888888888888876543 356678888888888887654 477 6788888888888
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
++|+.+++++|+++|++..|...++.|..++++
T Consensus 89 ~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 89 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence 888888888888888888888888888777653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.61 E-value=1.9e-15 Score=109.80 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=88.8
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
..++++|.++...|++. +|+..|++++.++|+++.+| +.+|.++...|++++|+.+++++++++|.+..+|..+
T Consensus 17 ~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 90 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLA-----EAALAFEAVCQKEPEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 90 (112)
T ss_dssp SCHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhH-----HHHHHHhhhcccccccchhh-hhhhhhhhhhhhHHHhhcccccccccccccccchHHH
Confidence 55788999999999875 79999999999999999999 6899999999999999999999999999999999999
Q ss_pred HHHHHHhhHhHHHHHHHHHHHH
Q psy4772 148 REILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al 169 (235)
|.++..+|+ +++|+++++++|
T Consensus 91 a~~y~~~g~-~~~A~~~l~~~l 111 (112)
T d1hxia_ 91 AVSHTNEHN-ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHh
Confidence 999999994 999999999976
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.61 E-value=4.2e-15 Score=115.32 Aligned_cols=131 Identities=8% Similarity=-0.045 Sum_probs=76.7
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
+..+..+|..++..|+|. +|+..|.++|..-|..+..- ... .... ++....++.+
T Consensus 15 a~~~~e~G~~~~~~~~~~-----~A~~~Y~~al~~~~~~~~~~-~~~----------~~~~---------~~~~~~~~~N 69 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYV-----QAVIQYGKIVSWLEMEYGLS-EKE----------SKAS---------ESFLLAAFLN 69 (168)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHTTCCSCC-HHH----------HHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHhhccc-hhh----------hhhc---------chhHHHHHHh
Confidence 445667777777777663 57777777777665555321 000 0000 0011234556
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+|.|+..++ ++++|+.+++++++++|+++.+|+.+|.++..+|++++|+.+|++++.++|+|..++..++.+...+
T Consensus 70 la~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 70 LAMCYLKLR-EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 666666666 3666666666666666666666666666666666666666666666666666666666666555433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.9e-15 Score=115.85 Aligned_cols=121 Identities=11% Similarity=-0.015 Sum_probs=97.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++|++|+..|.++|...|.....+........ .+.. .++ .++|.|+..+|++++|
T Consensus 27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~---------------~~~~---------~~~-~nla~~y~k~~~~~~A 81 (170)
T d1p5qa1 27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQ---------------ALRL---------ASH-LNLAMCHLKLQAFSAA 81 (170)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHH---------------HHHH---------HHH-HHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccccchHHHhhhc---------------hhHH---------HHH-HHHHHHHHhhhhcccc
Confidence 78999999999999999987765443322221 1111 134 3688899999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD 193 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~ 193 (235)
+..++++|+++|.++.+|+.+|.++..+| .+++|+.+|+++++++|+|..+...++.+...++...
T Consensus 82 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 82 IESCNKALELDSNNEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccccchhhhHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 4899999999999999999999988888887766554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.60 E-value=8.7e-15 Score=111.92 Aligned_cols=119 Identities=10% Similarity=0.039 Sum_probs=96.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+|.+|+..|.+||...|.....-.. ......+.+.+ .++ .++|.++..+|++++|
T Consensus 31 ~~y~~A~~~Y~~al~~~~~~~~~~~~------------------~~~~~~~~~~~-----~~~-~Nla~~~~~l~~~~~A 86 (153)
T d2fbna1 31 NEINEAIVKYKEALDFFIHTEEWDDQ------------------ILLDKKKNIEI-----SCN-LNLATCYNKNKDYPKA 86 (153)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCH------------------HHHHHHHHHHH-----HHH-HHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhhCcchhhhhhH------------------HHHHhhhhHHH-----HHH-hhHHHHHHHhcccchh
Confidence 68999999999999987654422111 11111222211 345 4799999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+..++++|+++|.++.+|+.+|.++..+| ++++|+.+|+++++++|+|..++..++.+..+++
T Consensus 87 l~~~~~al~~~p~~~ka~~~~g~~~~~lg-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 87 IDHASKVLKIDKNNVKALYKLGVANMYFG-FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccchhhhhhHHhHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5999999999999999999999999988876653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.57 E-value=1.7e-14 Score=111.77 Aligned_cols=132 Identities=9% Similarity=0.005 Sum_probs=100.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|+|.+|+..|++||...|.....-.. .......+. ..++ .++|.|+..+|++.+
T Consensus 28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~---------------~~~~~~~~~---------~~~~-~Nla~~~~~l~~~~~ 82 (168)
T d1kt1a1 28 GGKYVQAVIQYGKIVSWLEMEYGLSEK---------------ESKASESFL---------LAAF-LNLAMCYLKLREYTK 82 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHH---------------HHHHHHHHH---------HHHH-HHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhccchh---------------hhhhcchhH---------HHHH-HhHHHHHHHhhhccc
Confidence 378999999999999976654322111 011112111 1234 468999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch-HHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD-EELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~-~Al~~~~~ai 203 (235)
|+..++++|.++|.++.+|+.+|.++..+| .+++|+.+|+++++++|+|..++..++.+...++.+. .....+.+..
T Consensus 83 Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~-~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 83 AVECCDKALGLDSANEKGLYRRGEAQLLMN-EFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 4999999999999999999999999999887777654 3444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.57 E-value=4.7e-15 Score=114.88 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=97.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++|.+|+..|.++|+..|.. .+.....+...++|....+| .++|.++.++|++++|
T Consensus 41 ~~y~~Ai~~y~~al~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-~nla~~~~~~~~~~~A 96 (169)
T d1ihga1 41 QNWEMAIKKYTKVLRYVEGS-----------------------RAAAEDADGAKLQPVALSCV-LNIGACKLKMSDWQGA 96 (169)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-----------------------HHHSCHHHHGGGHHHHHHHH-HHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhh-----------------------hhhhhhHHHHHhChhhHHHH-HHHHHHHHhhcccchh
Confidence 68999999999999753322 11222334455667777778 4788999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~ 194 (235)
+..|+++|+++|+++.+|+.+|.++..+| ++++|+.+|+++++++|+|..+...++.+...+....+
T Consensus 97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~-~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 97 VDSCLEALEIDPSNTKALYRRAQGWQGLK-EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhHHHhHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 48999999999999999999988888888766554433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.1e-14 Score=105.58 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=81.2
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH-------HHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR-------HRQI 184 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~-------~r~~ 184 (235)
.+|..+...|++++|+.+|+++|+++|+++.+|+++|.++..+| .+++|+.+++++|+++|++..+|. .+|.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC-chHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888888888888888888888 488888888888888888776444 4555
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
++..++++++|++++++++..+|. +.....+..
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 120 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ 120 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 666677888999999999988875 444444333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=2.1e-13 Score=114.81 Aligned_cols=172 Identities=10% Similarity=0.001 Sum_probs=147.0
Q ss_pred cHHHHHHHHHhHHhc-CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-hhhHHHHHHHhcccccHH
Q psy4772 48 LFSDELSYIEGLISH-DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-PWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~-~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-aw~~~~g~il~~~~~~~e 125 (235)
..++|...|++|++. .|++...|...+.+...+|+++ +|...|.++|...|.+.. +| ...+......|..++
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~-----~a~~i~~~~l~~~~~~~~~~w-~~~~~~~~~~~~~~~ 152 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE-----KVHSIYNRLLAIEDIDPTLVY-IQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTSSSSCTHHHH-HHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHhcCChHHHH-HHHHHHHHHcCChHH
Confidence 357899999999975 8999999999999999998764 789999999999999876 78 467788888999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|...|++++...|.+...|...+.......+..+.|...++++++.+|.++..|...+..+...|++++|...|++|+..
T Consensus 153 ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999999999999988876665336899999999999999999999999999999999999999999999998
Q ss_pred CCCChH----HhHHHHHHHhhcCC
Q psy4772 206 DAKNYH----AWQHRQWVINLLDD 225 (235)
Q Consensus 206 dp~n~~----aw~~r~~~l~~l~~ 225 (235)
.|.++. .|......-...|+
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred CCCChHHHHHHHHHHHHHHHHcCC
Confidence 876543 55443333234443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=3.1e-13 Score=113.70 Aligned_cols=180 Identities=7% Similarity=0.055 Sum_probs=153.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcC-------CC--CHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTT-------QF--TPEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVV 117 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~-------~~--~e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il 117 (235)
..+.+...|++||...|.++.+|..-+.-+...+ .. ....+++|...|+++++ ..|.+...| ...+.+.
T Consensus 31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~-~~ya~~~ 109 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY-FAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHH-HHHHHHH
Confidence 3466788999999999999999988765543322 11 12346789999999997 488888889 5788899
Q ss_pred hcccccHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCCchHH
Q psy4772 118 NAGEKSERALALTADAITMNPANYT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MGEPDEE 195 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l~P~~~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~~~~A 195 (235)
...|..++|...|+++|...|.+.. +|...+....+.+ .+++|...++++++..|.+...|...+..... .|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~-~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHH
Confidence 9999999999999999999998865 7999999999998 59999999999999999999999999987654 6889999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
...+++++..+|.+...|...+..+...|+.+.+
T Consensus 189 ~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~a 222 (308)
T d2onda1 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999999999998888877554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=3.6e-14 Score=118.69 Aligned_cols=163 Identities=7% Similarity=-0.018 Sum_probs=130.7
Q ss_pred hhcHHHHHHHHHhHHhcC------CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHD------VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~------P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~~ 113 (235)
.++|++|+.+|.+|+.+. |+.+.+|.+.|.++..+|+++ +|+..|++++.+.+... .++ ..+
T Consensus 50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~-~~l 123 (290)
T d1qqea_ 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV-----NAVDSLENAIQIFTHRGQFRRGANFK-FEL 123 (290)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcH-----HHHHHHHHhhHHhhhcccchhHHHHH-HHH
Confidence 467899999999999983 445678999999999999874 79999999999888774 455 467
Q ss_pred HHHHh-cccccHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-------HHh
Q psy4772 114 GAVVN-AGEKSERALALTADAITMNPA------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-------QVW 179 (235)
Q Consensus 114 g~il~-~~~~~~eAl~~~~~al~l~P~------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-------~aw 179 (235)
|.++. ..|++++|+.++++++++.+. ...++.++|.++..+| ++++|+..|+++++..|.+. ..+
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g-~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC-hHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 77775 469999999999999987443 3556889999999999 59999999999999998876 346
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
...+.++...+++..|...++++++++|....+..+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 778888889999999999999999999988876533
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.9e-14 Score=105.01 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=85.3
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
+..+.++|..++..|+|+ +|+.+|.++|.++|+++.+| +++|.++..+|++++|+..++++|+++|++..+|..
T Consensus 4 a~~~k~~G~~~~~~~~y~-----~Ai~~y~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~ 77 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFD-----TALKHYDKAKELDPTNMTYI-TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCcccHHHH-HhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence 446778999999998874 79999999999999999999 579999999999999999999999999999877666
Q ss_pred HHHHHHHhhH------hHHHHHHHHHHHHHhCCC
Q psy4772 147 RREILKALNK------DLHQELKYIGEKIKENSK 174 (235)
Q Consensus 147 r~~~l~~l~~------~~eeal~~~~~al~~~P~ 174 (235)
++.++..+|. .+++|+.++++++..+|.
T Consensus 78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 6655555542 588999999999988775
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=4.4e-13 Score=111.94 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=130.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC------CCchhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK------NESPWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~------~~~aw~~~~g~il~~ 119 (235)
-.+|++|..+|.+| |.++..+|+++ +|+..|.+++.+.+. ...+| ...|.++..
T Consensus 30 ~~~~~~Aa~~y~~a--------------a~~y~~~~~~~-----~A~~~y~kA~~~~~~~~~~~~~a~~~-~~~g~~y~~ 89 (290)
T d1qqea_ 30 SYKFEEAADLCVQA--------------ATIYRLRKELN-----LAGDSFLKAADYQKKAGNEDEAGNTY-VEAYKCFKS 89 (290)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHTTCTH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHH--------------HHHHHHCcCHH-----HHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHH
Confidence 34678888777765 78899999885 799999999998433 33567 478999999
Q ss_pred ccccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHhCCCC------hHHhHHHHHHH
Q psy4772 120 GEKSERALALTADAITMNPAN------YTVWQYRREILKA-LNKDLHQELKYIGEKIKENSKN------YQVWRHRQIIV 186 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~-l~~~~eeal~~~~~al~~~P~n------~~aw~~r~~~l 186 (235)
+|++++|+.++++++++.+.. ..++...|.++.. ++ ++++|+.++++++++.+.. ..++.++|.++
T Consensus 90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~ 168 (290)
T d1qqea_ 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence 999999999999999987777 6678888888865 67 5999999999999875433 45689999999
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHH-------hHHHHHHHhhcCCcccc
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHA-------WQHRQWVINLLDDDDRG 229 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~a-------w~~r~~~l~~l~~~~~~ 229 (235)
..+|++++|++.|++++...|.+... +...+.+....|+...+
T Consensus 169 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A 218 (290)
T d1qqea_ 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999888632 34555555555555433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.2e-13 Score=124.43 Aligned_cols=138 Identities=10% Similarity=0.011 Sum_probs=98.0
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
...+.|+.|+..+.++++++|++..+|.++|.++...|++. +|+..+.+++.++|. .++ .++|.++..+|++
T Consensus 97 ~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~-----~A~~~~~~al~~~~~--~~~-~~LG~l~~~~~~~ 168 (497)
T d1ya0a1 97 AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS-----AIVKPQSSSCSYICQ--HCL-VHLGDIARYRNQT 168 (497)
T ss_dssp HHHHHHHHHHHHHTC------------------------------------CCHHHHHHHH--HHH-HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHH-----HHHHHHHHHhCCCHH--HHH-HHHHHHHHHcccH
Confidence 34578899999999999999999999999999999998875 688889999988874 577 5799999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
++|+.+|.+|++++|++..+|+++|.++...| +..+|+.+|.++|..+|..+.|+.+++.++.+..
T Consensus 169 ~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~-~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKG-DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 5899999999999999999999999999987654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.36 E-value=2.6e-13 Score=103.57 Aligned_cols=106 Identities=9% Similarity=0.063 Sum_probs=74.8
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCC------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPAN------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------ 175 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------ 175 (235)
|..+...|++++|+..|+++|+++|+. ..+|+++|.++..+| .+++|+..++++|++.|++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg-~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC-ccchhhHhhhhhhhccccccccccc
Confidence 444555555555555555555555543 256788888888888 4888888888888766532
Q ss_pred -----hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 176 -----YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 176 -----~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
..+++++|.++..+|++++|++.|++|+++.|........+..++
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~ 144 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 144 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHH
Confidence 336788899999999999999999999998877665554443333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.3e-12 Score=106.34 Aligned_cols=179 Identities=11% Similarity=0.019 Sum_probs=109.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCch-----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN-----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLRG 114 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~-----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~g 114 (235)
.|++++|+.+++++|...|++. .++..+|.++..+|+++ +|+..|.+++.+.|.... ++ ..+|
T Consensus 25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 98 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT-----RSLALMQQTEQMARQHDVWHYALWSL-IQQS 98 (366)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHhhcchHHHHHHH-HHHH
Confidence 4788888999999888888874 57888888888888765 456666666555444332 12 1233
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhhH------------------------------
Q psy4772 115 AVVNAGEKSERALALTADAITMNPAN--------YTVWQYRREILKALNK------------------------------ 156 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~--------~~aw~~r~~~l~~l~~------------------------------ 156 (235)
.++...|++.+++..+.+++.+.+.. ..++..+|.++...|.
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44444445555555554444332111 1233333444433331
Q ss_pred -------------------------------------------------hHHHHHHHHHHHHHhCCCCh----HHhHHHH
Q psy4772 157 -------------------------------------------------DLHQELKYIGEKIKENSKNY----QVWRHRQ 183 (235)
Q Consensus 157 -------------------------------------------------~~eeal~~~~~al~~~P~n~----~aw~~r~ 183 (235)
.+++|...++++++..|.+. ..+.+++
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 25566666666666665543 3455677
Q ss_pred HHHHHcCCchHHHHHHHHHHH------hCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 184 IIVEWMGEPDEELALTAAILA------QDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~------ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.++...|++++|+..+++++. ..|....+|..+|.++...|+..+|.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 311 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 777777778888877777763 44666677777777777777766554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.5e-12 Score=88.47 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-------hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKN-------YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n-------~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
..++.+|.++.+.| ++.+|+.++++|+++.|.+ ..+++++|.++.++|++++|++.++++|+++|+++.++.
T Consensus 6 ddc~~lG~~~~~~g-~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 34555666666666 3666666666666655443 345666777777777777777777777777777777777
Q ss_pred HHHHHHhhcC
Q psy4772 215 HRQWVINLLD 224 (235)
Q Consensus 215 ~r~~~l~~l~ 224 (235)
+++.+-..|+
T Consensus 85 Nl~~~~~~l~ 94 (95)
T d1tjca_ 85 NLKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 7766655443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.26 E-value=7.3e-13 Score=101.04 Aligned_cols=108 Identities=9% Similarity=-0.013 Sum_probs=83.1
Q ss_pred hHhhhH--HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------------chhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 68 SAWTQR--YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------------SPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 68 ~a~~~~--g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------------~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
.++..+ |...+..|+|+ +|++.|.++|.++|+.+ .+| .++|.++..+|++++|+..++++
T Consensus 8 ~a~~~l~~g~~~~~~g~y~-----~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~-~nlg~~~~~lg~~~~A~~~~~~a 81 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYD-----EAAANCRRAMEISHTMPPEEAFDHAGFDAFCH-AGLAEALAGLRSFDEALHSADKA 81 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhChhhhhhhhcccchhHHHHH-HHHHHHHHHcCccchhhHhhhhh
Confidence 344444 66666667664 68888888888888765 356 47899999999999999999999
Q ss_pred HHcCCC-----------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 134 ITMNPA-----------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 134 l~l~P~-----------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
|.+.|+ ...+++++|.++..+|+ +++|+.+|++++++.|+.......+
T Consensus 82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~-~eeA~~~~~~Al~l~~~~~~~~~~~ 140 (156)
T d2hr2a1 82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGK 140 (156)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred hhcccccccccccccchhHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHhhHHhhchHHHH
Confidence 987653 24478899999999995 9999999999999988765554433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.4e-11 Score=86.29 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=51.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC-------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN-------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~-------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
+.+|.++...|++++|+..|++|+++.|.+ ..+++++|.++.++| ++++|+.+++++|+++|++..++++++
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g-~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC-ChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 456666666666666666666666664443 456677777777777 377777777777777777777777776
Q ss_pred HHHHH
Q psy4772 184 IIVEW 188 (235)
Q Consensus 184 ~~l~~ 188 (235)
.+...
T Consensus 88 ~~~~~ 92 (95)
T d1tjca_ 88 YFEYI 92 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.11 E-value=2.4e-11 Score=100.81 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+++|+..+.++|+.+|++..++ ..+|.++...|++++|+..++++++++|++..++..++.++...+. .+++.....+
T Consensus 12 l~eAl~~l~~al~~~P~d~~ar-~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~-~~~a~~~~~~ 89 (264)
T d1zbpa1 12 LQQALELLIEAIKASPKDASLR-SSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA-RKDFAQGAAT 89 (264)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-HHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc-cHHHHHHhhh
Confidence 4578888888888888888888 4788888888888888888888888888888888888888777663 4555444433
Q ss_pred -HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 168 -KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 168 -al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
++..+|....++..++.++...|++++|.+.++++.++.|.....|..++
T Consensus 90 ~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~ 140 (264)
T d1zbpa1 90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140 (264)
T ss_dssp EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred hhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccC
Confidence 23345666677777788888888899999999999999888887776544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=3e-10 Score=88.68 Aligned_cols=127 Identities=8% Similarity=-0.076 Sum_probs=101.3
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW 144 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw 144 (235)
....++..+|..+...|+++ +|++.|.++|.+.|..+..+ +..+.. .......+.+....++
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e-----~A~~~~~~AL~l~rG~~l~~-~~~~~w------------~~~~r~~l~~~~~~a~ 70 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFE-----QASRHLSAALREWRGPVLDD-LRDFQF------------VEPFATALVEDKVLAH 70 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTTCCSSTTGG-GTTSTT------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCccccccc-CcchHH------------HHHHHHHHHHHHHHHH
Confidence 34567888899898888764 78999999999988777655 222211 1122334555667899
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH-------HHhCCCCh
Q psy4772 145 QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI-------LAQDAKNY 210 (235)
Q Consensus 145 ~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a-------i~ldp~n~ 210 (235)
..++.++..+| ++++|+.+++++++.+|.+..+|..++.++..+|++.+|+..|+++ +.++|...
T Consensus 71 ~~la~~~~~~g-~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 71 TAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCC-CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 99999999999 5999999999999999999999999999999999999999999988 56777644
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.07 E-value=2.1e-11 Score=101.19 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=113.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
-|++++|++.++++|+.+|+++.++..+|.+++..|+++ +|+..++++++++|++..++ ..++.++...+..++
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e-----~A~~~l~~a~~l~P~~~~~~-~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE-----RADEQLMQSIKLFPEYLPGA-SQLRHLVKAAQARKD 82 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCcHHHH-HHHHHHHHhccccHH
Confidence 378999999999999999999999999999999999875 79999999999999999999 577888877777777
Q ss_pred HHHHHHHHH-HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 126 ALALTADAI-TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 126 Al~~~~~al-~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
++....+.. ..+|....++..++.++...| +.++|...++++.+..|.....|+.++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~g-d~~~A~~~~~~a~e~~p~~~~~~~~~~ 140 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQ-DYEQVSELALQIEELRQEKGFLANDTS 140 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCCccccccC
Confidence 766555433 346777778888899999999 599999999999999999988877543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=8.2e-10 Score=90.58 Aligned_cols=159 Identities=14% Similarity=-0.023 Sum_probs=126.3
Q ss_pred hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-----hhhHHHHHHHhcccccHHHHHHHHHHHH
Q psy4772 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-----PWNYLRGAVVNAGEKSERALALTADAIT 135 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-----aw~~~~g~il~~~~~~~eAl~~~~~al~ 135 (235)
+-++-.+++...+|.+....|+++ +|+..++++|.+.|.+.. ++ ..+|.++...|++++|+..++++++
T Consensus 6 ~~~~~~ae~~~lrA~~~~~~g~~~-----~A~~~~~~aL~~~~~~~~~~~~~a~-~~lg~~~~~~g~~~~A~~~~~~a~~ 79 (366)
T d1hz4a_ 6 REDTMHAEFNALRAQVAINDGNPD-----EAERLAKLALEELPPGWFYSRIVAT-SVLGEVLHCKGELTRSLALMQQTEQ 79 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTCCTTCHHHHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCcCCCcHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334456778888999999999874 799999999999999863 66 4689999999999999999999999
Q ss_pred cCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC--------hHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 136 MNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN--------YQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 136 l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n--------~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
+.|.. ..++..++.++...+ ++..++..+.+++.+.+.. ..++..+|.++...|+++.+...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~ 158 (366)
T d1hz4a_ 80 MARQHDVWHYALWSLIQQSEILFAQG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 158 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHH
Confidence 76554 456778889999999 5999999999998754322 24677889999999999999999999
Q ss_pred HHHhCCCChH-----HhHHHHHHHhhcCCc
Q psy4772 202 ILAQDAKNYH-----AWQHRQWVINLLDDD 226 (235)
Q Consensus 202 ai~ldp~n~~-----aw~~r~~~l~~l~~~ 226 (235)
++...+.... ++...+.++...+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (366)
T d1hz4a_ 159 GIEVLSSYQPQQQLQCLAMLIQCSLARGDL 188 (366)
T ss_dssp HHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 9998776543 334444444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.68 E-value=9.9e-07 Score=70.85 Aligned_cols=166 Identities=12% Similarity=0.055 Sum_probs=112.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----cc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GE 121 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~ 121 (235)
.+++.+|+.+|++|.+. +++.+++++|.++...... +....+|+..+.++.... ++.++ ..+|.++.. ..
T Consensus 15 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~-~~d~~~a~~~~~~a~~~~--~~~a~-~~l~~~~~~~~~~~~ 88 (265)
T d1ouva_ 15 EKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGV-EKNLKKAASFYAKACDLN--YSNGC-HLLGNLYYSGQGVSQ 88 (265)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS-CCCHHHHHHHHHHHHHTT--CHHHH-HHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCc-chhHHHHHHhhccccccc--ccchh-hccccccccccccch
Confidence 47899999999999764 6899999999998763222 234556777777766544 55555 456655543 23
Q ss_pred ccHHHHHHHHHHHHcCC----------------------------------CChHHHHHHHHHHHHhh---HhHHHHHHH
Q psy4772 122 KSERALALTADAITMNP----------------------------------ANYTVWQYRREILKALN---KDLHQELKY 164 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P----------------------------------~~~~aw~~r~~~l~~l~---~~~eeal~~ 164 (235)
..+.|+..++.+....+ .+..++++++.++.... .....+..+
T Consensus 89 ~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 168 (265)
T d1ouva_ 89 NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALAS 168 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred hhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhh
Confidence 45666666666665433 33333344444443311 124556666
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHH----cCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEW----MGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
++++.+ +.++.+++++|.++.. ..++.+|+.+|+++.+. .++.+++++|.++.
T Consensus 169 ~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 169 YDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred hhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHH
Confidence 666654 6789999999988876 56789999999999887 57889999999884
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.65 E-value=1.8e-08 Score=78.34 Aligned_cols=110 Identities=11% Similarity=-0.050 Sum_probs=88.9
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
...|..+...|++++|+..|.++|.+.|..+..+...+.. .......+.+....+|..++.++..+|
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w-------------~~~~r~~l~~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQF-------------VEPFATALVEDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTT-------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4688999999999999999999999999886554322211 111222334445679999999999999
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
++++|+.++++++.++|.+..+|..++.++..+|+..++.--|
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y 124 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAY 124 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999999988776444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=1.5e-07 Score=68.38 Aligned_cols=86 Identities=8% Similarity=-0.059 Sum_probs=66.7
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
..+.|+-||++..... .+.++++|..+..+++.+|.+. .+| |.+|..+.++|+|++|+.+++++|+++|++..|..
T Consensus 35 ~qt~F~YAw~Lv~S~~--~~d~~~gI~lLe~~~~~~p~~~rd~l-Y~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEAESRRRECL-YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 5678888888887643 2456788888888888888765 577 67888888888888888888888888888888887
Q ss_pred HHHHHHHHhh
Q psy4772 146 YRREILKALN 155 (235)
Q Consensus 146 ~r~~~l~~l~ 155 (235)
-+..|-.++.
T Consensus 112 L~~~Ie~~~~ 121 (124)
T d2pqrb1 112 LKSMVEDKIQ 121 (124)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=1.1e-07 Score=69.18 Aligned_cols=84 Identities=12% Similarity=0.002 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCCh-HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 141 YTVWQYRREILKALN--KDLHQELKYIGEKIKENSKNY-QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~--~~~eeal~~~~~al~~~P~n~-~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
.++.|+-+|++.+-. .+..+++..++.+++.+|.+. .+|+++|.++.++|+|++|+.+++++++++|+|..|..-+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 455666666665421 135666666666666666553 56666666666666666666666666666666666666655
Q ss_pred HHHhhcC
Q psy4772 218 WVINLLD 224 (235)
Q Consensus 218 ~~l~~l~ 224 (235)
.+-..+.
T Consensus 115 ~Ie~~~~ 121 (124)
T d2pqrb1 115 MVEDKIQ 121 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=9.4e-06 Score=64.86 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=74.8
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----ccccHHHHHHHHHHHHcCCCCh
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GEKSERALALTADAITMNPANY 141 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~~~~eAl~~~~~al~l~P~~~ 141 (235)
||.+|+++|..+...+++. +|+..|.++.+. .+..++ +.+|.++.. ...+..|+..+.++.... ++
T Consensus 1 ~p~~~~~lG~~~~~~~d~~-----~A~~~~~kAa~~--g~~~A~-~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~ 70 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFT-----QAKKYFEKACDL--KENSGC-FNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS 70 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHT--TCHHHH-HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHC--CCHHHH-HHHHHHHHcCCCcchhHHHHHHhhccccccc--cc
Confidence 6889999999999988774 799999999875 578888 789999887 446899999999987655 77
Q ss_pred HHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhC
Q psy4772 142 TVWQYRREILKALN---KDLHQELKYIGEKIKEN 172 (235)
Q Consensus 142 ~aw~~r~~~l~~l~---~~~eeal~~~~~al~~~ 172 (235)
.++...+.++.... ...+.++..+++++...
T Consensus 71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred chhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 88888887776531 13566666666666543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=1.5e-05 Score=57.76 Aligned_cols=116 Identities=7% Similarity=0.036 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHH
Q psy4772 85 PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL---NKDLHQE 161 (235)
Q Consensus 85 e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eea 161 (235)
+.++++|+..|.++.+.+ ++.+. +.+|. ......++|+..++++.+. .++.+.+.+|.++..- .+++++|
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~-~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGC-LSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH-HHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhh-hhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHH
Confidence 346678888888888764 56666 44543 3345678999999998875 6888999999888762 2357899
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHHHHHHHHHHHhCCCC
Q psy4772 162 LKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 162 l~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~Al~~~~~ai~ldp~n 209 (235)
+.+++++.+. .++.+.+.+|.++.. ..++.+|+.+|++|.++....
T Consensus 79 ~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~ 128 (133)
T d1klxa_ 79 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED 128 (133)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999875 578889999998876 457889999999998876544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.03 E-value=4.6e-05 Score=55.06 Aligned_cols=114 Identities=10% Similarity=-0.004 Sum_probs=89.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----ccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~~ 122 (235)
.++++|+.+|.++.+.. ++.+.+++|.. .+...++|+..+.++... .++.+. +.+|.++.. ..+
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~-------~~~~~~~a~~~~~~aa~~--g~~~a~-~~Lg~~y~~g~~~~~d 74 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVSN-------SQINKQKLFQYLSKACEL--NSGNGC-RFLGDFYENGKYVKKD 74 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHTC-------TTSCHHHHHHHHHHHHHT--TCHHHH-HHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhccc-------cccCHHHHHHHHhhhhcc--cchhhh-hhHHHhhhhccccchh
Confidence 36799999999999874 66777777631 122346899999998875 578888 689988875 345
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCC
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~ 174 (235)
.++|+..|+++.+. .++.+.+.+|.++..- .++.++|+.+++++.+....
T Consensus 75 ~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 75 LRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 79999999999986 5788999999999872 34689999999999886543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.28 E-value=2.8 Score=33.92 Aligned_cols=134 Identities=10% Similarity=0.138 Sum_probs=80.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+++..|..+..++ .++..|.....++....+. +..+.+...+.++|..... .-..+...|.+++.
T Consensus 54 ~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~------~la~i~~~~~~~~~d~l~~----~v~~ye~~~~~e~L 118 (336)
T d1b89a_ 54 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF------RLAQMCGLHIVVHADELEE----LINYYQDRGYFEEL 118 (336)
T ss_dssp TCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH------HHHHHTTTTTTTCHHHHHH----HHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHH------HHHHHHHHHhhcCHHHHHH----HHHHHHHcCChHHH
Confidence 3455555554443 5677888888887766543 1112222112222222211 22455677889999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-hCC-------CChHHhHHHHHHHHHcCCchHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK-ENS-------KNYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~-~~P-------~n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
+..++.++.+.+.+...++..+.++-+-+. ++-++++++.-. .++ ...+.|-.+..++.+.|.+++|+.
T Consensus 119 i~~Le~~~~~~~~~~~~~~~L~~lyak~~~--~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~ 195 (336)
T d1b89a_ 119 ITMLEAALGLERAHMGMFTELAILYSKFKP--QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 195 (336)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCH--HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCccchHHHHHHHHHHHHhCh--HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Confidence 999999999999999888888877766552 444555444211 111 223456777788888888877764
|