Psyllid ID: psy4780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Secondary Structure (PSIPRED)
ccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Flexible Loop (DISEMBL)
MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Low Complexity Region (SEG)
MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Disordered region (IsUnstruct)
****VVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG***
Disordered Region (DISOPRED)
*GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Disordered Region (DISEMBL)
MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Disordered Region (DISPRO)
*GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGKKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
O43246	635	Cationic amino acid trans	yes	N/A	0.474	0.116	0.523	2e-17
Q8BLQ7	635	Cationic amino acid trans	yes	N/A	0.474	0.116	0.476	2e-15
B3TP03	654	Low affinity cationic ami	no	N/A	0.467	0.111	0.464	1e-12
Q6DCE8	622	Low affinity cationic ami	N/A	N/A	0.474	0.118	0.461	5e-12
P52569	658	Low affinity cationic ami	no	N/A	0.467	0.110	0.440	1e-11
P18581	657	Low affinity cationic ami	no	N/A	0.467	0.111	0.440	1e-11
B5D5N9	657	Low affinity cationic ami	no	N/A	0.467	0.111	0.440	1e-11
A8I499	657	Low affinity cationic ami	no	N/A	0.467	0.111	0.440	2e-11
P70423	618	Cationic amino acid trans	no	N/A	0.461	0.116	0.439	3e-11
O08812	619	Cationic amino acid trans	no	N/A	0.461	0.116	0.439	5e-11

>sp|O43246|CTR4_HUMAN Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4 PE=2 SV=3

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 10/84 (11%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   ++TYVS+GE WAF+IGWN++LE++IG           A+VARAWSGY+DS+   +I
Sbjct: 100 GSAYLFTYVSMGELWAFLIGWNVLLEYIIG----------GAAVARAWSGYLDSMFSHSI 149

Query: 62  SNFTIATVGELHEDLLGKYPDFLA 85
            NFT   VG     LLG YPDFLA
Sbjct: 150 RNFTETHVGSWQVPLLGHYPDFLA 173

Involved in the transport of the cationic amino acids (arginine, lysine and ornithine).
Homo sapiens (taxid: 9606)

>sp|Q8BLQ7|CTR4_MOUSE Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 10/84 (11%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   ++TYVS+GE WAF+IGWN++LE++IG           A+VARAWSGY+D++   +I
Sbjct: 100 GSAYLFTYVSMGEIWAFLIGWNVLLEYLIG----------GAAVARAWSGYLDAIFNHSI 149

Query: 62  SNFTIATVGELHEDLLGKYPDFLA 85
            NFT + +G      L  YPDFLA
Sbjct: 150 RNFTESHLGVWQVPFLAHYPDFLA 173

Involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Mus musculus (taxid: 10090)

>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 11/84 (13%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +YTYV+VGE WAF+ GWN+IL           ++IG +SVARAWSG  D L G  I
Sbjct: 96  GSAYLYTYVAVGELWAFITGWNLIL----------SYVIGTSSVARAWSGTFDELLGKQI 145

Query: 62  SNFTIATVGELHEDLLGKYPDFLA 85
           S+F   T  +++   L +YPDF A
Sbjct: 146 SHF-FKTYFKMNYPGLAEYPDFFA 168

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Gallus gallus (taxid: 9031)

>sp|Q6DCE8|CTR2_XENLA Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 17/91 (18%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +Y+YV+VGE WAF+ GWN+IL           ++IG +SVARAWS   D L G  I
Sbjct: 97  GSAYLYSYVTVGELWAFITGWNLILS----------YVIGTSSVARAWSATFDELVGKKI 146

Query: 62  SNFTIATVGELHEDL--LGKYPDFLAFFVCL 90
            NF   T   +H DL  L +YPD   F VCL
Sbjct: 147 GNFLGNT---MHMDLPGLAEYPDI--FAVCL 172

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Xenopus laevis (taxid: 8355)

>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +YTYV+VGE WAF+ GWN+IL           ++IG +SVARAWSG  D L    I
Sbjct: 97  GSAYLYTYVTVGELWAFITGWNLILS----------YVIGTSSVARAWSGTFDELLSKQI 146

Query: 62  SNFTIATVGELHEDLLGKYPDFLA 85
             F + T   ++   L +YPDF A
Sbjct: 147 GQF-LRTYFRMNYTGLAEYPDFFA 169

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Homo sapiens (taxid: 9606)

>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +YTYV+VGE WAF+ GWN+IL           ++IG +SVARAWSG  D L    I
Sbjct: 97  GSAYLYTYVTVGELWAFITGWNLILS----------YVIGTSSVARAWSGTFDELLNKQI 146

Query: 62  SNFTIATVGELHEDLLGKYPDFLA 85
             F   T  +++   L +YPDF A
Sbjct: 147 GQF-FKTYFKMNYTGLAEYPDFFA 169

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Mus musculus (taxid: 10090)

>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +YTYV+VGE WAF+ GWN+IL           ++IG +SVARAWSG  D L    I
Sbjct: 97  GSAYLYTYVTVGELWAFITGWNLILS----------YVIGTSSVARAWSGTFDELLNKQI 146

Query: 62  SNFTIATVGELHEDLLGKYPDFLA 85
             F   T  +++   L +YPDF A
Sbjct: 147 GQF-FKTYFKMNYTGLAEYPDFFA 169

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Rattus norvegicus (taxid: 10116)

>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 11/84 (13%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +YTYV+VGE WAF+ GWN+IL           ++IG +SVARAWSG +D L    I
Sbjct: 97  GSAYLYTYVTVGELWAFITGWNLILS----------YVIGTSSVARAWSGTLDELLNKQI 146

Query: 62  SNFTIATVGELHEDLLGKYPDFLA 85
             F   T  +++   L +YPDF A
Sbjct: 147 GQF-FRTYFKMNYTGLAEYPDFSA 169

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Sus scrofa (taxid: 9823)

>sp|P70423|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +Y+YV+VGE WAF  GWN+IL           ++IG ASVARAWS   D+L G  I
Sbjct: 95  GSAYLYSYVTVGELWAFTTGWNLILS----------YVIGTASVARAWSSAFDNLIGNHI 144

Query: 62  SNFTIATVGELHEDLLGKYPDF 83
           S     T+      +L +YPDF
Sbjct: 145 SRTLKGTILLKMPHVLAEYPDF 166

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.

Mus musculus (taxid: 10090)

>sp|O08812|CTR3_RAT Cationic amino acid transporter 3 OS=Rattus norvegicus GN=Slc7a3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +Y+YV+VGE WAF  GWN+IL           ++IG ASVARAWS   D+L G  I
Sbjct: 95  GSAYLYSYVTVGELWAFTTGWNLIL----------SYVIGTASVARAWSSAFDNLIGNHI 144

Query: 62  SNFTIATVGELHEDLLGKYPDF 83
           S     T+      +L +YPDF
Sbjct: 145 SQTLKGTILLNMPHVLAEYPDF 166

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
91089303	642	PREDICTED: similar to cationic amino aci	0.551	0.133	0.708	4e-30
58386179	666	AGAP010567-PA [Anopheles gambiae str. PE	0.596	0.139	0.631	1e-28
242008485	372	Cationic amino acid transporter, putativ	0.551	0.231	0.687	2e-27
312375109	683	hypothetical protein AND_14543 [Anophele	0.596	0.136	0.621	2e-27
157123028	663	cationic amino acid transporter [Aedes a	0.596	0.140	0.621	3e-27
157131513	635	cationic amino acid transporter [Aedes a	0.596	0.146	0.621	3e-27
170035950	664	cationic amino acid transporter 4 [Culex	0.596	0.140	0.601	1e-26
357625552	655	cationic amino acid transporter 4 [Danau	0.679	0.161	0.528	4e-25
195377664	664	GJ11839 [Drosophila virilis] gi|19415476	0.596	0.140	0.592	7e-25
195127892	664	GI13475 [Drosophila mojavensis] gi|19392	0.596	0.140	0.592	2e-24

>gi|91089303|ref|XP_971648.1| PREDICTED: similar to cationic amino acid transporter 4 [Tribolium castaneum] gi|270012508|gb|EFA08956.1| hypothetical protein TcasGA2_TC006663 [Tribolium castaneum]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 74/96 (77%), Gaps = 10/96 (10%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTY+S+GEFWAFVIGWNI+LEHMIG          AASVARAWSGYVDSL GG I
Sbjct: 102 GSAYVYTYISIGEFWAFVIGWNILLEHMIG----------AASVARAWSGYVDSLFGGVI 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG 97
           SN TI+  GELHE LL +YPDFLAF VC+ YALLLG
Sbjct: 152 SNTTISITGELHEQLLSRYPDFLAFSVCIVYALLLG 187

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58386179|ref|XP_314539.2| AGAP010567-PA [Anopheles gambiae str. PEST] gi|55240134|gb|EAA09935.2| AGAP010567-PA [Anopheles gambiae str. PEST]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 74/103 (71%), Gaps = 10/103 (9%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTYVS+GEFWAFVIGWNIILEHM+G          AASVARAWSGYVDS+ G  +
Sbjct: 102 GSAYVYTYVSIGEFWAFVIGWNIILEHMLG----------AASVARAWSGYVDSMLGNIV 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
           +N T+   GE+HE LL KYPDFLAFFVC+ YA+ L A   A A
Sbjct: 152 ANITMEITGEMHEQLLAKYPDFLAFFVCISYAVALAAGVKATA 194

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008485|ref|XP_002425034.1| Cationic amino acid transporter, putative [Pediculus humanus corporis] gi|212508683|gb|EEB12296.1| Cationic amino acid transporter, putative [Pediculus humanus corporis]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 71/96 (73%), Gaps = 10/96 (10%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTY S+GEFWAFVIGWNIILEHMIG          AASVARAWSGYVDSL GGA+
Sbjct: 106 GSAYVYTYCSIGEFWAFVIGWNIILEHMIG----------AASVARAWSGYVDSLFGGAV 155

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG 97
           SN T++  GE+H  LLG YPD LAF VCL YA LLG
Sbjct: 156 SNLTLSVFGEMHVHLLGHYPDVLAFLVCLTYAGLLG 191

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375109|gb|EFR22539.1| hypothetical protein AND_14543 [Anopheles darlingi]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 72/103 (69%), Gaps = 10/103 (9%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTYVS+GEFWAFVIGWNIILEHM+G          AASVARAWSGYVDS+ G  +
Sbjct: 102 GSAYVYTYVSIGEFWAFVIGWNIILEHMLG----------AASVARAWSGYVDSMLGNIV 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
           +N T+   GE+HE LL KYPDFLA FVCL YA+ L     A A
Sbjct: 152 ANLTMELTGEMHEQLLAKYPDFLACFVCLSYAVALATGVKATA 194

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123028|ref|XP_001659990.1| cationic amino acid transporter [Aedes aegypti] gi|108874550|gb|EAT38775.1| AAEL009358-PA [Aedes aegypti]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 73/103 (70%), Gaps = 10/103 (9%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTYVS+GEFWAFVIGWNIILEHM+G          AASVARAWSGYVDS+ G  +
Sbjct: 102 GSAYVYTYVSIGEFWAFVIGWNIILEHMLG----------AASVARAWSGYVDSMLGNIV 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
           +N T+   GE+HE LL KYPDFLAF VC+ YA+ L A   A A
Sbjct: 152 ANTTMEITGEMHEKLLAKYPDFLAFGVCMSYAIALAAGVKATA 194

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131513|ref|XP_001662266.1| cationic amino acid transporter [Aedes aegypti] gi|108871494|gb|EAT35719.1| AAEL012129-PA [Aedes aegypti]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 73/103 (70%), Gaps = 10/103 (9%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTYVS+GEFWAFVIGWNIILEHM+G          AASVARAWSGYVDS+ G  +
Sbjct: 74  GSAYVYTYVSIGEFWAFVIGWNIILEHMLG----------AASVARAWSGYVDSMLGNIV 123

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
           +N T+   GE+HE LL KYPDFLAF VC+ YA+ L A   A A
Sbjct: 124 ANTTMEITGEMHEKLLAKYPDFLAFGVCMSYAIALAAGVKATA 166

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035950|ref|XP_001845829.1| cationic amino acid transporter 4 [Culex quinquefasciatus] gi|167878428|gb|EDS41811.1| cationic amino acid transporter 4 [Culex quinquefasciatus]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 72/103 (69%), Gaps = 10/103 (9%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTYVS+GEFWAFVIGWNI+LEHM+G          AASVARAWSGYVDS+ G  +
Sbjct: 102 GSAYVYTYVSIGEFWAFVIGWNILLEHMLG----------AASVARAWSGYVDSMLGNIV 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
           +N T+   GE+HE LL KYPDFLAF VC+ YA+ L     A A
Sbjct: 152 ANTTMEITGEMHEQLLAKYPDFLAFGVCMSYAIALATGVKATA 194

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625552|gb|EHJ75954.1| cationic amino acid transporter 4 [Danaus plexippus]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 82/121 (67%), Gaps = 15/121 (12%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G    YTYVS+GEFWAF+IGWNI+LE+MIG          AASVARAWSGY+D++  GAI
Sbjct: 102 GSAYAYTYVSIGEFWAFIIGWNIVLEYMIG----------AASVARAWSGYLDAILDGAI 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121
           SN TI+  GELHE LL +YPD LAF +C+  +L+L   +V    S Y+++  G  I N T
Sbjct: 152 SNATISVTGELHETLLSRYPDVLAFLICIVASLIL---AVGVKTSAYINN--GLTILNLT 206

Query: 122 I 122
           +
Sbjct: 207 V 207

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377664|ref|XP_002047608.1| GJ11839 [Drosophila virilis] gi|194154766|gb|EDW69950.1| GJ11839 [Drosophila virilis]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 73/103 (70%), Gaps = 10/103 (9%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTY+S+GEFWAFVIGWNI+LEHM+G          AASVARAWSGYVDS+ GG I
Sbjct: 102 GSAYVYTYISIGEFWAFVIGWNILLEHMLG----------AASVARAWSGYVDSMLGGWI 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
           +N T+A +G +HE  L +YPD LAF VC+ YA  LG+   A A
Sbjct: 152 ANTTLAVMGGIHEPGLAQYPDVLAFLVCIVYAAALGSGVKATA 194

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127892|ref|XP_002008401.1| GI13475 [Drosophila mojavensis] gi|193920010|gb|EDW18877.1| GI13475 [Drosophila mojavensis]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 73/103 (70%), Gaps = 10/103 (9%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   VYTY+S+GEFWAFVIGWNI+LEHM+G          AASVARAWSGYVDS+ GG I
Sbjct: 102 GSAYVYTYISIGEFWAFVIGWNILLEHMLG----------AASVARAWSGYVDSMLGGWI 151

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
           +N T++ +G LHE  L +YPD LAF VC+ YA  LG+   A A
Sbjct: 152 ANTTMSLMGGLHEPGLAQYPDVLAFLVCVVYAAALGSGVKATA 194

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0036984	669	CG13248 [Drosophila melanogast	0.762	0.177	0.5	2.4e-24
WB|WBGene00016806	589	C50D2.2 [Caenorhabditis elegan	0.673	0.178	0.491	4e-21
UNIPROTKB|E2RDE7	635	SLC7A4 "Uncharacterized protei	0.602	0.148	0.461	1e-17
UNIPROTKB|O43246	635	SLC7A4 "Cationic amino acid tr	0.641	0.157	0.445	1.7e-17
ZFIN|ZDB-GENE-030919-2	677	slc7a4 "solute carrier family	0.711	0.163	0.413	2.3e-16
UNIPROTKB|F1RK99	635	SLC7A4 "Uncharacterized protei	0.711	0.174	0.396	2.6e-16
RGD|1305905	463	Slc7a4 "solute carrier family	0.641	0.215	0.409	3.6e-16
MGI|MGI:2146512	635	Slc7a4 "solute carrier family	0.641	0.157	0.409	7.1e-16
WB|WBGene00017747	583	F23F1.6 [Caenorhabditis elegan	0.628	0.168	0.392	2.7e-15
UNIPROTKB|F1NW41	609	SLC7A2 "Low affinity cationic	0.596	0.152	0.432	4.5e-14

FB|FBgn0036984 CG13248 [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 2.4e-24, P = 2.4e-24
 Identities = 65/130 (50%), Positives = 79/130 (60%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   VYTY+S+GEFWAFVIGWNI+LEHM+G          AASVARAWSGYVDS+ GG I
Sbjct:   102 GSAYVYTYISMGEFWAFVIGWNILLEHMLG----------AASVARAWSGYVDSMLGGWI 151

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121
              N T+   G +HE  L +YPD LAF VC+ YA  L     A A    + +L   A+    
Sbjct:   152 GNTTLELTGGIHEPGLAQYPDVLAFLVCIVYAAALAGGVKATAVFNSLLTLVNIAVMVLV 211

Query:   122 IATVGELHED 131
             I+ VG  + D
Sbjct:   212 IS-VGFWYAD 220

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

WB|WBGene00016806 C50D2.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 256 (95.2 bits), Expect = 4.0e-21, P = 4.0e-21
 Identities = 59/120 (49%), Positives = 73/120 (60%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G    YTYV VGE WAFVIGWNIILEHM+G          AA+VAR+WSGY+DSL G  I
Sbjct:    92 GSAYTYTYVGVGELWAFVIGWNIILEHMLG----------AAAVARSWSGYLDSLLGNVI 141

Query:    62 SNFTIATVGELHE--DLLGKYPDFLAFF--VCLGYALLLGAASVARAWSGYVDSLCGGAI 117
             SN TIA  G LHE     G YPD LAF   V + + + LG+  V+  ++ ++  L  G +
Sbjct:   142 SNSTIARTGHLHEASSFFGDYPDLLAFLLIVLVAFFVALGS-KVSTNFNSFLTILNIGIV 200

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RDE7 SLC7A4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 48/104 (46%), Positives = 64/104 (61%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   ++TYVS+GE WAF+IGWN++LE++IG         GAA VARAWSGY+DS+ G  I
Sbjct:   100 GSAYLFTYVSMGELWAFLIGWNVLLEYLIG---------GAA-VARAWSGYLDSMFGHRI 149

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAW 105
              NFT A +G     LL  YPDFLA  + L  +  +   +   +W
Sbjct:   150 HNFTQAHIGTWQVPLLAHYPDFLAAAIVLLASAFISCGARVSSW 193

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|O43246 SLC7A4 "Cationic amino acid transporter 4" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 49/110 (44%), Positives = 66/110 (60%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   ++TYVS+GE WAF+IGWN++LE++IG         GAA VARAWSGY+DS+   +I
Sbjct:   100 GSAYLFTYVSMGELWAFLIGWNVLLEYIIG---------GAA-VARAWSGYLDSMFSHSI 149

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDS 111
              NFT   VG     LLG YPDFLA  + L  +  +   +   +W  +  S
Sbjct:   150 RNFTETHVGSWQVPLLGHYPDFLAAGIILLASAFVSCGARVSSWLNHTFS 199

GO:0016021 "integral to membrane" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=TAS

GO:0015802 "basic amino acid transport" evidence=TAS

ZFIN|ZDB-GENE-030919-2 slc7a4 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 4" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 50/121 (41%), Positives = 66/121 (54%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   ++TYVSVGE WAF+IGWN+ILE+MIG         GAA VARAWSGY+DS+    I
Sbjct:   100 GSAYMFTYVSVGEIWAFLIGWNVILEYMIG---------GAA-VARAWSGYLDSIFNHRI 149

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121
              NFT + V       L  YPD LA  + L  +  +       +W  ++ S    A+  F 
Sbjct:   150 QNFTESHVMRREVPFLAHYPDLLAAAILLVASFFISFGVRVSSWLNHIFSAISMAVIVFI 209

Query:   122 I 122
             +
Sbjct:   210 L 210

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RK99 SLC7A4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 48/121 (39%), Positives = 68/121 (56%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   ++TYVS+GE WAF+IGW+++LE++IG         GAA VARAWSGY+D++    I
Sbjct:    94 GSAYLFTYVSMGELWAFLIGWDLVLEYLIG---------GAA-VARAWSGYLDAMFNHRI 143

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121
              NFT   VG      L  YPDFLA  + L  ++ +   +   +W  +  S     +  FT
Sbjct:   144 RNFTEVHVGVWQVPFLAGYPDFLAAGILLLVSIFVSCGARVSSWLNHTLSAINMTVILFT 203

Query:   122 I 122
             I
Sbjct:   204 I 204

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

RGD|1305905 Slc7a4 "solute carrier family 7 (orphan transporter), member 4" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 3.6e-16, P = 3.6e-16
 Identities = 45/110 (40%), Positives = 65/110 (59%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   ++TYVS+GE WAF+IGWN++LE++IG         GAA VARAWSGY+D++   +I
Sbjct:   100 GSAYLFTYVSMGEIWAFLIGWNVLLEYLIG---------GAA-VARAWSGYLDAIFNHSI 149

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDS 111
              NFT + +G      L  YPDFLA  + L  +  +   +   +W  +  S
Sbjct:   150 RNFTESHMGVWQMPFLAHYPDFLAAGILLVASAFVSCGARVSSWLNHTFS 199

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2146512 Slc7a4 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 4" [Mus musculus (taxid:10090)]

 Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
 Identities = 45/110 (40%), Positives = 65/110 (59%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   ++TYVS+GE WAF+IGWN++LE++IG         GAA VARAWSGY+D++   +I
Sbjct:   100 GSAYLFTYVSMGEIWAFLIGWNVLLEYLIG---------GAA-VARAWSGYLDAIFNHSI 149

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDS 111
              NFT + +G      L  YPDFLA  + L  +  +   +   +W  +  S
Sbjct:   150 RNFTESHLGVWQVPFLAHYPDFLAAGILLVASAFVSCGARVSSWLNHTFS 199

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00017747 F23F1.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 202 (76.2 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 44/112 (39%), Positives = 65/112 (58%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G    Y+YV +GE WAF++GW + LE+MIG           A+VAR+WS Y D+L   ++
Sbjct:    93 GSAYTYSYVGMGEIWAFIVGWTVPLEYMIGN----------AAVARSWSAYFDNLVSKSV 142

Query:    62 SNFTIATVGELHED--LLGKYPDFLAFFVC--LGYALLLGAASVARAWSGYV 109
             SN+T+ TVG L +       YPDFLAFF+   +  A+ +G+   A   + +V
Sbjct:   143 SNWTLDTVGRLSDGKGFFALYPDFLAFFLLFLVAVAVAMGSKFSANVNTSFV 194

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|F1NW41 SLC7A2 "Low affinity cationic amino acid transporter 2" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 45/104 (43%), Positives = 59/104 (56%)

Query:     2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
             G   +YTYV+VGE WAF+ GWN+IL ++IG           +SVARAWSG  D L G  I
Sbjct:    96 GSAYLYTYVAVGELWAFITGWNLILSYVIG----------TSSVARAWSGTFDELLGKQI 145

Query:    62 SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAW 105
             S+F   T  +++   L +YPDF A F+ L  + LL       AW
Sbjct:   146 SHF-FKTYFKMNYPGLAEYPDFFAVFLILLLSGLLSFGVKESAW 188

GO:0000064 "L-ornithine transmembrane transporter activity" evidence=IEA

GO:0002537 "nitric oxide production involved in inflammatory response" evidence=IEA

GO:0005289 "high affinity arginine transmembrane transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006809 "nitric oxide biosynthetic process" evidence=IEA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA

GO:0043030 "regulation of macrophage activation" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43246	CTR4_HUMAN	No assigned EC number	0.5238	0.4743	0.1165	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	1e-22
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	4e-10
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	4e-05

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 92.6 bits (230), Expect = 1e-22
 Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 17/130 (13%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G   +Y+YV+VGE WAF+ GWN+ILE          ++IG A+VAR+WS Y D L    I
Sbjct: 93  GSAYLYSYVTVGELWAFITGWNLILE----------YVIGTAAVARSWSAYFDELLNKQI 142

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDS------LCGG 115
             F       L+ D L +YPDF A  + L  A+LL       AW   + +      L   
Sbjct: 143 GQFRRTYFK-LNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFV 201

Query: 116 AISNFTIATV 125
            I+ FT A V
Sbjct: 202 IIAGFTKADV 211

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 82  DFLAFFVCLGYALLL----GAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP 137
           +  AF    G+ L+L    G A+VAR+WS Y D L    I  F       L+ D L +YP
Sbjct: 105 ELWAFIT--GWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLAEYP 161

Query: 138 DFLAFFVCLGYALLL 152
           DF A  + L  A+LL
Sbjct: 162 DFFAVCLILLLAVLL 176

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 2   GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI 61
           G    Y Y ++GE  AF+IGW++ LE          + +  A+VA  W GY+     G  
Sbjct: 67  GSPYTYAYEAMGELTAFIIGWSLWLE----------YGVAVAAVAVGWGGYLQEFLPGVG 116

Query: 62  SNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLGAASVARA 104
            +       +     +   P  L   + L Y L LGA    + 
Sbjct: 117 LDLPAVLTAKPGNGGVFNLPALL-IVLFLTYILYLGAKESGKV 158

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.67
KOG1286|consensus	554		99.49
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.97
PRK10655	438	potE putrescine transporter; Provisional	98.91
TIGR00909	429	2A0306 amino acid transporter.	98.91
PRK10580	457	proY putative proline-specific permease; Provision	98.85
PRK10249	458	phenylalanine transporter; Provisional	98.82
PRK11021	410	putative transporter; Provisional	98.82
PRK10238	456	aromatic amino acid transporter; Provisional	98.82
TIGR00930	953	2a30 K-Cl cotransporter.	98.81
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.8
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.8
PRK11387	471	S-methylmethionine transporter; Provisional	98.79
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.78
PRK10644	445	arginine:agmatin antiporter; Provisional	98.77
PRK10746	461	putative transport protein YifK; Provisional	98.76
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.75
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.73
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.73
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.72
PRK15049	499	L-asparagine permease; Provisional	98.72
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.71
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.69
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.64
TIGR00913	478	2A0310 amino acid permease (yeast).	98.61
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.6
PRK10836	489	lysine transporter; Provisional	98.56
TIGR00911	501	2A0308 L-type amino acid transporter.	98.43
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.4
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.32
KOG1287|consensus	479		98.28
PRK15238	496	inner membrane transporter YjeM; Provisional	98.27
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	98.16
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.11
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.96
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.83
COG0833	541	LysP Amino acid transporters [Amino acid transport	96.99
TIGR00814	397	stp serine transporter. The HAAAP family includes	96.59
PHA02764	399	hypothetical protein; Provisional	96.37
KOG1289|consensus	550		95.24
PF03845	320	Spore_permease: Spore germination protein; InterPr	94.13
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	93.25
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	93.16
TIGR00906	557	2A0303 cationic amino acid transport permease.	92.15
PRK10483	414	tryptophan permease; Provisional	89.9
PRK15132	403	tyrosine transporter TyrP; Provisional	88.21
KOG1286|consensus	554		84.57
PRK13629	443	threonine/serine transporter TdcC; Provisional	84.42

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.67  E-value=4.1e-16  Score=140.75  Aligned_cols=119  Identities=39%  Similarity=0.679  Sum_probs=95.5

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||+|.|+|+++||.+||++||++++||.+          +.++++++|+.|++++++....++.....+ ...++...+
T Consensus        92 sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~----------~~a~va~~~s~yl~~ll~~~~~~~~~~~~~-~~~~~l~~~  160 (557)
T TIGR00906        92 AGSAYLYSYVTVGELWAFITGWNLILEYVI----------GTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLAEY  160 (557)
T ss_pred             CCcceeeHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhcccccccccc-ccCCccccc
Confidence            699999999999999999999999999999          999999999999999986422211111111 111223456


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCCC
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHED  131 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~~~~  131 (156)
                      +++++++++++++.+|.+|+|+++|+|.+.+.+|..+..+++ ..|..+.+
T Consensus       161 ~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~i-v~g~~~~~  210 (557)
T TIGR00906       161 PDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVI-IAGFTKAD  210 (557)
T ss_pred             chHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhh-hHHHhhCC
Confidence            789999999999999999999999999999999999887766 66654443

>KOG1286|consensus

Probab=99.49  E-value=3.3e-14  Score=128.89  Aligned_cols=115  Identities=35%  Similarity=0.438  Sum_probs=96.5

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||+|+|+|+.+||.+||.+|||.+|||++          +.|+++|+|+.|++.+.+  ....+..   ..+.+..+.+
T Consensus        95 aGs~~~ya~~~i~e~~aF~~gWny~l~y~i----------~~a~e~~a~s~~~~~w~~--~~~~~~~---~~~~~~~~~~  159 (554)
T KOG1286|consen   95 AGSFYTYAYRFVGESLAFAIGWNYLLEYVI----------GLAAEARAWSSYLDYWTG--ASLIGIL---VDTVNPGGWI  159 (554)
T ss_pred             cccceeeeeeeeCcHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHhc--ccccccc---ccCCCCCccH
Confidence            599999999999999999999999999999          999999999999999971  1111100   0122335678


Q ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCCC
Q psy4780          81 PDFLAFFVCLGYALLLG-AASVARAWSGYVDSLCGGAISNFTIATVGELHED  131 (156)
Q Consensus        81 ~d~~A~livlilt~l~~-~Gik~sa~vn~i~tli~~~I~~fii~~vg~~~~~  131 (156)
                      +|++++++++.++.+.. .++|.+..+|+++++++..+..+++ ..|..+.|
T Consensus       160 ~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi-~~G~~~~d  210 (554)
T KOG1286|consen  160 PDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVI-IAGGGPAD  210 (554)
T ss_pred             HHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheee-ecCCCcCC
Confidence            99999999998888888 9999999999999999999999999 77865543

>TIGR00908 2A0305 ethanolamine permease

Probab=98.97  E-value=1.2e-08  Score=88.84  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...+.|..          ..++.+.+++.|++.+++.    .+               
T Consensus        70 ~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~a~~~~~~l~~~~p~----~~---------------  120 (442)
T TIGR00908        70 AGGGYGFARRAFGPWGGFLAGTAILIEFAF----------APPAIACFIGAYCESLFPV----GP---------------  120 (442)
T ss_pred             CCCHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcc----Cc---------------
Confidence            699999999999999999999999999999          8899999999999888753    11               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF  120 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f  120 (156)
                      ....+.++..+++.+|.+|+|.+++++.+.++++......
T Consensus       121 ~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i  160 (442)
T TIGR00908       121 GWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGV  160 (442)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            1355667777889999999999999999999988765433

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10655 potE putrescine transporter; Provisional

Probab=98.91  E-value=2e-08  Score=87.39  Aligned_cols=97  Identities=13%  Similarity=-0.014  Sum_probs=76.1

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...+++++          +.++.+.+...|+..+++......+               
T Consensus        68 ~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~a~~~~~y~~~~~~~~~~~~~---------------  122 (438)
T PRK10655         68 SGGMGGYAEYAFGKSGNFMANYTYGVSLLI----------ANVAIAISAVGYGTELFGATLSPVQ---------------  122 (438)
T ss_pred             CCchHHHHHHHcCcchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcccccchHH---------------
Confidence            699999999999999999999999999999          7777788888999888753111111               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ....+.++..+++.+|.+|+|.++++|.+.+..+......+.
T Consensus       123 ~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~  164 (438)
T PRK10655        123 ICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLS  164 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            134456666788999999999999999998877765554443

>TIGR00909 2A0306 amino acid transporter

Probab=98.91  E-value=1.5e-08  Score=87.56  Aligned_cols=109  Identities=22%  Similarity=0.323  Sum_probs=84.5

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +|+.|.|+++.+|+..||++||..++.|.+          ..++.+.+++.|++.+++....+.|.....   .+.....
T Consensus        66 ~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  132 (429)
T TIGR00909        66 AGSPYTYAYEAMGELTAFIIGWSLWLEYGV----------AVAAVAVGWGGYLQEFLPGVGLDLPAVLTA---KPGNGGV  132 (429)
T ss_pred             CCcceeeHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHccccCchhhhc---CCccccc
Confidence            589999999999999999999999999999          999999999999999886422222321110   0001122


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ....+..+.++++.+|++|.|.++|++.+.+.++......++
T Consensus       133 ~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~  174 (429)
T TIGR00909       133 FNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFA  174 (429)
T ss_pred             ccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            335567788899999999999999999999999988765444

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.85  E-value=3e-08  Score=86.98  Aligned_cols=91  Identities=14%  Similarity=0.067  Sum_probs=75.4

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||+.+++|.+          ..++.+.+++.|++.++++    .|.              
T Consensus        72 ~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~~--------------  123 (457)
T PRK10580         72 ASSFSRYAQENLGPLAGYITGWTYCFEILI----------VAIADVTAFGIYMGVWFPT----VPH--------------  123 (457)
T ss_pred             CCCHHHHHHHHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCC----CCh--------------
Confidence            599999999999999999999999999998          7777788888898776532    221              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF  120 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f  120 (156)
                       ..++..+.++++.+|.+|+|.+++.+.+.+.+|......
T Consensus       124 -~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~  162 (457)
T PRK10580        124 -WIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIII  162 (457)
T ss_pred             -HHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence             244556677889999999999999999999988775543

>PRK10249 phenylalanine transporter; Provisional

Probab=98.82  E-value=4.7e-08  Score=86.06  Aligned_cols=92  Identities=13%  Similarity=0.018  Sum_probs=75.1

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||+..+.|..          ..++.+.+.+.|++.++++    .|               
T Consensus        84 ~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~a~~~~~~~~~~~----~~---------------  134 (458)
T PRK10249         84 SGSFAHFAYKYWGPFAGFLSGWNYWVMFVL----------VGMAELTAAGIYMQYWFPD----VP---------------  134 (458)
T ss_pred             CCCHHHHHHHHhChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHcCCc----Cc---------------
Confidence            699999999999999999999999999988          7777777788888766532    22               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT  121 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi  121 (156)
                      ...++.++..+++.+|++|+|.+++++.+.+++|......+
T Consensus       135 ~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~  175 (458)
T PRK10249        135 TWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGM  175 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            13456677788899999999999999999998887544443

>PRK11021 putative transporter; Provisional

Probab=98.82  E-value=9.5e-08  Score=82.54  Aligned_cols=93  Identities=16%  Similarity=0.104  Sum_probs=70.1

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...+.+..          +.+++....+.|++.+++..  +.+               
T Consensus        62 aGG~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~---------------  114 (410)
T PRK11021         62 AGGPAHFVGMAFGPRLGRVTGWLFLSVIPV----------GLPAALQIAAGFGQALFGWS--SWQ---------------  114 (410)
T ss_pred             CCCHHHhHHHHhCchhHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHcCCC--Cch---------------
Confidence            699999999999999999999999988777          54444444456777666421  111               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF  120 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f  120 (156)
                      ....+.++.++++.+|.+|+|.++|++.+.+++...+...
T Consensus       115 ~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~  154 (410)
T PRK11021        115 LLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVA  154 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            1345566777889999999999999999998876655443

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.82  E-value=7.4e-08  Score=84.77  Aligned_cols=90  Identities=13%  Similarity=0.047  Sum_probs=76.1

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||+..+.|..          ..++.+.+.+.|++.++++    .|.              
T Consensus        75 aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~----------~~~~~~~~~~~~~~~~~p~----~~~--------------  126 (456)
T PRK10238         75 AGSFSHFAYKYWGSFAGFASGWNYWVLYVL----------VAMAELTAVGKYIQFWYPE----IPT--------------  126 (456)
T ss_pred             CCCHHHHHHHHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCc----CcH--------------
Confidence            699999999999999999999999999999          8888888899998766532    221              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISN  119 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~  119 (156)
                       +.++.++..+++.+|.+|+|..+++|.+.+.+|.....
T Consensus       127 -~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~  164 (456)
T PRK10238        127 -WVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVV  164 (456)
T ss_pred             -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence             34556666788999999999999999999999986554

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.81  E-value=4.1e-08  Score=94.17  Aligned_cols=99  Identities=11%  Similarity=-0.069  Sum_probs=80.0

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||+|.|.++++|+.+||.+||...+.+.+          ++|..+.+|+.|+..+++.......   .    .+.  ..
T Consensus       142 aGG~Y~yisralGp~~Gf~iG~~~~la~~v----------a~A~~~~Gf~eyl~~lf~~~~~~~~---~----~~~--~~  202 (953)
T TIGR00930       142 GGGAYYLISRSLGPEFGGSIGLIFAFANAV----------AVAMYVVGFAETVLDLLRENGSKIM---V----DPI--ND  202 (953)
T ss_pred             ccHHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhcccccc---c----Ccc--cc
Confidence            699999999999999999999999999999          9999999999999998853111000   0    010  01


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAIS  118 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~  118 (156)
                      ..+.+.+++++++.+|++|+|.++|++.+.++++....
T Consensus       203 ~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~l  240 (953)
T TIGR00930       203 IRIYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSI  240 (953)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            24678888999999999999999999999998865544

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.80  E-value=9.3e-08  Score=83.51  Aligned_cols=92  Identities=8%  Similarity=0.035  Sum_probs=71.7

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++ +||.+||++||.......+          +.++++.++..|+..+++......+               
T Consensus        67 ~GG~y~y~~~-~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~y~~~~~p~~~~~~~---------------  120 (435)
T PRK10435         67 QGGPIAYAGE-ISPAFGFQTGVLYYHANWI----------GNLAIGITAVSYLSTFFPVLNDPIP---------------  120 (435)
T ss_pred             CCChhHHHHH-HCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHccccCChHH---------------
Confidence            5999999999 9999999999987776667          7778888899999888753211111               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAIS  118 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~  118 (156)
                      ..+++.+++.+++.+|.+|+|..+++|.+.++++....
T Consensus       121 ~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~  158 (435)
T PRK10435        121 AGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPV  158 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            12455666778899999999999999998887766443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.80  E-value=7.9e-08  Score=84.39  Aligned_cols=93  Identities=13%  Similarity=0.063  Sum_probs=74.8

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||+..+.+++          ..++.+.+.+.+++.+.+    +.|               
T Consensus        55 ~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~---------------  105 (446)
T PRK10197         55 TGSFSTYADKAIGRWAGYTIGWLYWWFWVL----------VIPLEANIAAMILHSWVP----GIP---------------  105 (446)
T ss_pred             CCCHHHHHHHHcChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhccc----cCc---------------
Confidence            699999999999999999999999999999          666566555566655432    122               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ...++.++..+++.+|.+|+|..+++|.+.+++|.....-++
T Consensus       106 ~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~i  147 (446)
T PRK10197        106 IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFI  147 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence            246778888889999999999999999999999877665544

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.79  E-value=9.1e-08  Score=84.34  Aligned_cols=93  Identities=15%  Similarity=-0.002  Sum_probs=71.6

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...++|..          ..++.+.+.+.|++.+++    +.|               
T Consensus        78 aGG~y~y~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~p----~~~---------------  128 (471)
T PRK11387         78 TGAFHVYAARYLGPATGYTVAWLYWLTWTV----------ALGSSLTAAGFCMQYWFP----QVP---------------  128 (471)
T ss_pred             CCCHHHHHHHhcChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhccC----cCc---------------
Confidence            699999999999999999999999999999          655555555556554432    112               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ....+.++.++++.+|++|+|..++++.+.+++|......++
T Consensus       129 ~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~i  170 (471)
T PRK11387        129 VWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFI  170 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123445556778899999999999999999998888765444

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.78  E-value=1e-07  Score=81.83  Aligned_cols=99  Identities=21%  Similarity=0.281  Sum_probs=78.2

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+|+.+||++||...++|..          ..++.+....+|+...++......+.             .
T Consensus        61 ~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  117 (426)
T PF13520_consen   61 AGGIYVWVSRAFGPFWGFIVGWLYWVAYIL----------SLASVASSFASYLLSLFGPDLNPSPW-------------P  117 (426)
T ss_dssp             STTHHHHHHHHH-HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHTTTTTGGGTCSHH-------------H
T ss_pred             cCeeeehhhhcccccchhcccceeEEEeec----------cccccccchhhhhhhccccccccccc-------------h
Confidence            699999999999999999999999999999          88888888888987776421111010             1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGA-ISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~-I~~fii  122 (156)
                      ....++++..+++.+|.+|.|.++|++.+.+.++.. ....++
T Consensus       118 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i  160 (426)
T PF13520_consen  118 QFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLI  160 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             heeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhhe
Confidence            145667778899999999999999999999999993 443333

...

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.77  E-value=1.3e-07  Score=82.62  Aligned_cols=96  Identities=14%  Similarity=0.023  Sum_probs=73.5

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...+.+.+          +.++.+.....|...+++....  |             ..
T Consensus        70 aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~-------------~~  124 (445)
T PRK10644         70 PGGSYAYARRCFGPFLGYQTNVLYWLACWI----------GNIAMVVIGVGYLSYFFPILKD--P-------------LV  124 (445)
T ss_pred             CCChhHHHHHHcCchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcccCC--c-------------HH
Confidence            699999999999999999999999999988          6666666666777666542110  1             01


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT  121 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi  121 (156)
                      ....+++++.+++.+|.+|+|..+++|++.+.++......+
T Consensus       125 ~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~  165 (445)
T PRK10644        125 LTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGI  165 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            13455667778999999999999999999998886544433

>PRK10746 putative transport protein YifK; Provisional

Probab=98.76  E-value=1.3e-07  Score=83.43  Aligned_cols=91  Identities=16%  Similarity=0.065  Sum_probs=74.4

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||+..+.|+.          ..++...+.+.|++.++++    .|.              
T Consensus        73 sGg~~~y~~~~~g~~~Gf~~gw~~~~~~~~----------~~~~~~~a~~~~l~~~~p~----~~~--------------  124 (461)
T PRK10746         73 TGSFAVYAHRYMSPFFGYLTAWSYWFMWMA----------VGISEITAIGVYVQFWFPE----MAQ--------------  124 (461)
T ss_pred             CCCHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHccCC----Cch--------------
Confidence            699999999999999999999999999988          6666667788888776642    221              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF  120 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f  120 (156)
                       ..++.++..+++.+|++|+|..++++.+.+.+|......
T Consensus       125 -~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~  163 (461)
T PRK10746        125 -WIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIV  163 (461)
T ss_pred             -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             345566677888999999999999999999988665533

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.75  E-value=1.3e-07  Score=83.47  Aligned_cols=99  Identities=15%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+|+.+||++||...+.+.+          +.++.+.....|+..+++....+.+             ..
T Consensus        72 sGG~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~l~~~~p~~~~~~~-------------~~  128 (473)
T TIGR00905        72 DGGIYAYAREGFGPYIGFMSGWGYWLSAWI----------GNVAYAVLLFSALGYFFPLFGSGNP-------------VP  128 (473)
T ss_pred             CCChhhhHHhHcccccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhcCCCc-------------HH
Confidence            599999999999999999999999999888          7677777777888877752111101             01


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ....+.++.++++.+|.+|+|.++|++.+.+.++......++
T Consensus       129 ~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~i  170 (473)
T TIGR00905       129 SILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFI  170 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            134566677788999999999999999999998876554433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.73  E-value=1.6e-07  Score=80.10  Aligned_cols=97  Identities=7%  Similarity=-0.016  Sum_probs=79.6

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc-cchhHhhhhccccccCCc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI-SNFTIATVGELHEDLLGK   79 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~-~~~p~~~~~~~~~~~~~~   79 (156)
                      +||.|+|+++.+||..||++||.+.+++..          ..++.+.+++++++++++... .+.|              
T Consensus        58 ~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~----------~~~ay~~~~~~~l~~~~~~~~~~~~~--------------  113 (381)
T TIGR00837        58 GASFNTIAKDLLGKTGNIIAGLSLLFVLYI----------LTYAYISGGGSILSRLIGEYFGFPWS--------------  113 (381)
T ss_pred             CCCHHHHHHHHhCHHHHHHHHHHHHHHHHH----------HHHHHHHccHHHHHHHHHHhcCCCcc--------------
Confidence            478999999999999999999999999888          888888899999988885321 1111              


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                       ....+.+++++++.++.+|.|+.+|+|.+.+..+......++
T Consensus       114 -~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~i  155 (381)
T TIGR00837       114 -ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVF  155 (381)
T ss_pred             -HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence             134566777888999999999999999999999888766655

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.73  E-value=2.2e-07  Score=82.00  Aligned_cols=92  Identities=11%  Similarity=0.006  Sum_probs=75.0

Q ss_pred             CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcch
Q psy4780           2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP   81 (156)
Q Consensus         2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~   81 (156)
                      ||.|.|+++.+||.+||++||...+.|.+          ..++.+.+.+.|++.+++.    .+               .
T Consensus        84 ~~~~~ya~~~~g~~~gf~~gW~~~~~~~~----------~~~a~~~a~~~~~~~~~p~----~~---------------~  134 (469)
T PRK11049         84 KSFSDFASDLLGPWAGYFTGWTYWFCWVV----------TGIADVVAITAYAQFWFPD----LS---------------D  134 (469)
T ss_pred             CcHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCC----Cc---------------H
Confidence            67889999999999999999999999988          7677777888888766542    11               1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          82 DFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        82 d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ...+.+++.+++.+|++|+|..+++|.+.+.+|......++
T Consensus       135 ~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~i  175 (469)
T PRK11049        135 WVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALI  175 (469)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24456667788999999999999999999999877666555

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.72  E-value=1.7e-07  Score=81.90  Aligned_cols=89  Identities=13%  Similarity=0.090  Sum_probs=76.3

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...+.|+.          ..++.+.+.+.|++.++++    .|.              
T Consensus        75 ~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~l~~~~~~----~~~--------------  126 (452)
T TIGR01773        75 TGSFSTYADDAIGRWAGFTIGWLYWWFWVL----------VIPLEAIAAAGILQYWFPD----IPL--------------  126 (452)
T ss_pred             CCCHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCc----CcH--------------
Confidence            599999999999999999999999999999          8888888888898877642    221              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAIS  118 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~  118 (156)
                       +..+.++.++++.+|.+|+|..+++|.+.+++|....
T Consensus       127 -~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l  163 (452)
T TIGR01773       127 -WLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAI  163 (452)
T ss_pred             -HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence             4567777888899999999999999999998887654

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK15049 L-asparagine permease; Provisional

Probab=98.72  E-value=2.3e-07  Score=82.84  Aligned_cols=94  Identities=16%  Similarity=0.031  Sum_probs=70.0

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...+.|..          ..++...+.+.|...+ +.. +..|               
T Consensus        91 aGg~y~y~~~~~G~~~gf~~GW~~~l~~~~----------~~~~~~~a~~~~~~~~-~~~-~~~~---------------  143 (499)
T PRK15049         91 SGSFVSYAREFLGEKAAYVAGWMYFINWAM----------TGIVDITAVALYMHYW-GAF-GGVP---------------  143 (499)
T ss_pred             CCCHHHHHHHHhCcHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-ccC-CCCc---------------
Confidence            699999999999999999999999999987          5444444445555422 110 1111               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT  121 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi  121 (156)
                      .+.++.++.++++.+|++|+|.++++|.+.+++|......+
T Consensus       144 ~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~  184 (499)
T PRK15049        144 QWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTF  184 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            13456777788999999999999999999999886554443

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.71  E-value=1.5e-07  Score=82.97  Aligned_cols=109  Identities=14%  Similarity=0.075  Sum_probs=77.9

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||..++++..          ..++.+.+++.++..++++... ...  ..++..+.....
T Consensus        77 aGG~Y~~~~~~~g~~~gf~~gW~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~  143 (475)
T TIGR03428        77 SGAIYQWSRRMGGEVIGWFAGWFMIIAQIV----------TAAAAAIALQVVLPNIWSGFQI-IGE--DPTLTSPSGAAN  143 (475)
T ss_pred             CCCHHHHHHHHcCccccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhhh-ccc--CccccCCCchHH
Confidence            699999999999999999999999999998          8888888888887666532110 000  000000000012


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ....+.++..+++.+|++|+|.++++|.+.+.++......++
T Consensus       144 ~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~ii  185 (475)
T TIGR03428       144 AVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVI  185 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            346666777889999999999999999999988876555444

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.69  E-value=2.8e-07  Score=81.25  Aligned_cols=98  Identities=13%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcch
Q psy4780           2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP   81 (156)
Q Consensus         2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~   81 (156)
                      ||.|.|+++.+||.+||++||...+.+.+          +..+.+....+|++.+++......+             ...
T Consensus        67 GG~y~y~~~~fG~~~gf~~gw~~w~~~~~----------~~~~~~~~~~~~~~~~~p~~~~~~~-------------~~~  123 (468)
T TIGR03810        67 GGVYSYAKAGFGPFMGFISAWGYWLSAWL----------GNVAYATLLFSTLGYFFPIFGGGNN-------------PPS  123 (468)
T ss_pred             CChhhhHHhHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcccccCCCc-------------HHH
Confidence            59999999999999999999999999988          5555555556666666542110000             001


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          82 DFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        82 d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ...+.++..+++.+|.+|+|.++++|.+.+++|......++
T Consensus       124 ~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~i  164 (468)
T TIGR03810       124 IIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFI  164 (468)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455556678999999999999999999999976544443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.64  E-value=4.1e-07  Score=79.41  Aligned_cols=95  Identities=17%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIIL-EHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGK   79 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liL-ey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~   79 (156)
                      +||.|.|+++.+||.+||++||...+ .+..          +.+..+.+.+.|++.+.+..    +.             
T Consensus        73 ~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~----------~~a~~a~~~~~y~~~~~~~~----~~-------------  125 (445)
T PRK11357         73 NGADYVYLKNAGSRPLAFLSGWASFWANDAP----------SLSIMALAIVSNLGFLTPID----PL-------------  125 (445)
T ss_pred             CCCceeeHHHhcCChhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCc----hH-------------
Confidence            69999999999999999999998554 4455          66778888888987654310    10             


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      .....+.++..+++.+|.+|+|.++|++.+.+++|......++
T Consensus       126 ~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~i  168 (445)
T PRK11357        126 LGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVI  168 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            1145667777888999999999999999999999876544333

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.61  E-value=5.8e-07  Score=79.03  Aligned_cols=89  Identities=12%  Similarity=0.013  Sum_probs=70.0

Q ss_pred             CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcch
Q psy4780           2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP   81 (156)
Q Consensus         2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~   81 (156)
                      |+.|.|+++.+||.+||++||...++|+.          ..++.+.+.+.|++.+.+    +.+.               
T Consensus        68 G~~~~~~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~---------------  118 (478)
T TIGR00913        68 GSFATYASRFVDPAFGFAVGWNYWLQWLI----------VLPLELVTASMTIQYWTD----KVNP---------------  118 (478)
T ss_pred             CCHHHHHHHHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHcCC----CCCH---------------
Confidence            45668999999999999999999999999          888888888888875542    1111               


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy4780          82 DFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISN  119 (156)
Q Consensus        82 d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~  119 (156)
                      ..+..++..+++.+|++|+|.+++++.+.+.+|.....
T Consensus       119 ~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~  156 (478)
T TIGR00913       119 AVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAII  156 (478)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            23334455678899999999999999999988765443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.60  E-value=4.5e-07  Score=78.12  Aligned_cols=101  Identities=21%  Similarity=0.183  Sum_probs=84.7

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++++|+.+||.+||...++|.+          ..++.+.....++..+++... ....        +  ...
T Consensus        75 ~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~--------~--~~~  133 (466)
T COG0531          75 AGGAYAYAKRALGPRLGFLAGWLYLLAYVI----------ALAAIAIGAASYLSYLFPGPG-LLSI--------G--PLL  133 (466)
T ss_pred             CCCeeeehhhhcCcchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCcch-hhcC--------C--chH
Confidence            699999999999999999999999999999          999999999999999887522 0000        0  012


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ....+.++..+++.+|.+|+|.+++.+.+.++++..+...+.
T Consensus       134 ~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~  175 (466)
T COG0531         134 IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFI  175 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678888999999999999999999999999999887766

>PRK10836 lysine transporter; Provisional

Probab=98.56  E-value=7.8e-07  Score=78.89  Aligned_cols=93  Identities=17%  Similarity=0.000  Sum_probs=67.3

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||+..++|..          ..+..+.+...++..+++    +.|               
T Consensus        79 sGg~y~y~~~~~g~~~gf~~Gw~~~~~~~~----------~~a~~~~a~~~~~~~~~~----~~~---------------  129 (489)
T PRK10836         79 SGSFATYGQNYVEEGFGFALGWNYWYNWAV----------TIAVDLVAAQLVMSWWFP----DTP---------------  129 (489)
T ss_pred             CCCHHHHHHHHcChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhcCC----CCc---------------
Confidence            699999999999999999999999998887          544333233333333222    111               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ...++.+...+++.+|++|+|..+++|.+.+++|......++
T Consensus       130 ~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i  171 (489)
T PRK10836        130 GWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFI  171 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH
Confidence            123455666778899999999999999999999886654433

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.43  E-value=4e-06  Score=74.42  Aligned_cols=98  Identities=15%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHHHHHHHHHHH-HhcCcccchhHhhhhccccccCC
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIIL-EHMIGKHMVCKHMIGAASVARAWSGYVDS-LCGGAISNFTIATVGELHEDLLG   78 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liL-ey~i~~~~~~~~~~~~A~va~~~s~yl~~-l~~~~~~~~p~~~~~~~~~~~~~   78 (156)
                      +||.|.|+++.+|+.+||+.||...+ -+..          ..+..+..++.|+.+ ++++.  ..|.            
T Consensus       107 sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~----------~~a~~a~~~~~y~~~~~~~~~--~~~~------------  162 (501)
T TIGR00911       107 SGGEYNYILEVFGPLLAFLRLWIELLVIRPG----------SQAVNALNFAIYILTPVFPDC--EVPE------------  162 (501)
T ss_pred             CCchhhhHHhHhCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcCCC--CCch------------
Confidence            59999999999999999999997654 3334          566777778888643 34321  1111            


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          79 KYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        79 ~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ......+.+++.+++.+|.+|+|.++|++.+.+.++......++
T Consensus       163 ~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~i  206 (501)
T TIGR00911       163 WAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLII  206 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            01235667778889999999999999999999999987655443

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.40  E-value=5.7e-06  Score=73.82  Aligned_cols=96  Identities=15%  Similarity=0.046  Sum_probs=86.3

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||=-.|+++.+||.+||++||+-.+++++          .+.+-..+.+.|++.++++    .|.              
T Consensus        76 ~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~----------v~~ae~tAi~~y~~~WfP~----vP~--------------  127 (462)
T COG1113          76 SGSFSDYARKYLGPWAGFLTGWTYWFFWVL----------VGIAELTAIGIYLQFWFPD----VPQ--------------  127 (462)
T ss_pred             CCcHHHHHHHHhcchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCC----CcH--------------
Confidence            477889999999999999999999999999          8888899999999999964    353              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVG  126 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg  126 (156)
                       +.++....++++.+|..++|.-...+..++++|...+.-++ .+|
T Consensus       128 -Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~I-v~G  171 (462)
T COG1113         128 -WVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFI-VVG  171 (462)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence             67888899999999999999999999999999999888777 555

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.32  E-value=5.8e-06  Score=72.88  Aligned_cols=101  Identities=11%  Similarity=-0.027  Sum_probs=74.0

Q ss_pred             CCcchhHHHHHhh----HHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhcccccc
Q psy4780           1 MGENVVYTYVSVG----EFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDL   76 (156)
Q Consensus         1 aGsaY~Y~y~~~G----e~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~   76 (156)
                      +||.|.|+++.+|    +.+||++||...+.+..          ..++.+.+.+.|+.++.....+. +     ++.++ 
T Consensus        77 ~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~-~-----~~~~~-  139 (482)
T TIGR00907        77 SGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVA----------GTASTDLSVAQLILGIVSLTTPG-R-----EYIPT-  139 (482)
T ss_pred             CccHHHHHHHhcccccccceeHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcCCC-C-----Ccccc-
Confidence            6999999999987    57799999999999999          88888999999988765321111 0     00000 


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy4780          77 LGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISN  119 (156)
Q Consensus        77 ~~~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~  119 (156)
                       .......+.++..+++.+|.+|+|..++++.+.++++.....
T Consensus       140 -~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~  181 (482)
T TIGR00907       140 -RWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFL  181 (482)
T ss_pred             -CchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence             011123445567788999999999999999998887765554

>KOG1287|consensus

Probab=98.28  E-value=9.1e-06  Score=73.01  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHH-HHHHhcCcccchhHhhhhccccccCCc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGY-VDSLCGGAISNFTIATVGELHEDLLGK   79 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~y-l~~l~~~~~~~~p~~~~~~~~~~~~~~   79 (156)
                      +|+-|.|..++||+++||+-+|.-.+--..         .+.|..+..++.| ++.+++.  ...|..            
T Consensus        77 sGgd~ayi~~afg~~~aF~~~wvs~l~~~p---------~~~Ai~altF~~Y~l~p~fp~--c~~p~~------------  133 (479)
T KOG1287|consen   77 SGGDYAYISEAFGPFPAFLFLWVSLLIIVP---------TSAAIIALTFATYLLKPFFPL--CDVPRV------------  133 (479)
T ss_pred             CCcchhhHHHHhccchhHHHHHHHHHHHhh---------hHHHHHHHHHHHHhhcccCCC--CCCchH------------
Confidence            599999999999999999999987664444         1459999999999 7777762  222321            


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q psy4780          80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGE  127 (156)
Q Consensus        80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~  127 (156)
                      .-.+.+...+.+++.+|+.++|-.+|++.+.+..|..+...++ ..|.
T Consensus       134 ~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIi-i~G~  180 (479)
T KOG1287|consen  134 ASKLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLII-ITGL  180 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-Hhch
Confidence            1257888889999999999999999999999999999999988 7674

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.27  E-value=8.2e-06  Score=72.53  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=63.6

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHH-HHHHHHHHHHHHhcCccc-chhHhhhhccccccCC
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAAS-VARAWSGYVDSLCGGAIS-NFTIATVGELHEDLLG   78 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~-va~~~s~yl~~l~~~~~~-~~p~~~~~~~~~~~~~   78 (156)
                      +||.|.|+++.+||.+||++||....+++.          ..++ .+..+......+++.... .++.  . +.+   ..
T Consensus        69 aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~---~~  132 (496)
T PRK15238         69 KGGIYSWMNKSVGPKFAFIGTFMWFASYII----------WMVSTASKIWIPFSTFIFGKDTTQTWHF--L-GLN---ST  132 (496)
T ss_pred             CCcHHHHHHHHcCchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHcCcchhhhhhh--h-ccc---ch
Confidence            599999999999999999999998888887          3222 222233332223332110 0000  0 000   01


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy4780          79 KYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGA  116 (156)
Q Consensus        79 ~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~  116 (156)
                      ......+++...+++.+|.+|+|.++|++++.+.++..
T Consensus       133 ~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~  170 (496)
T PRK15238        133 QVVGILAVIWMILVTFVASKGINKIAKVTSIGGIAVML  170 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            12235566666789999999999999999987766653

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.16  E-value=1.4e-06  Score=76.63  Aligned_cols=100  Identities=15%  Similarity=0.101  Sum_probs=77.7

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+|+.+||.+||...++|+.          ..+..+.+.+.+++.+-.  .++.|..+          ..
T Consensus        59 ~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~  116 (478)
T PF00324_consen   59 AGGFYAYASRGLGPALGFAAGWAYWLSYIA----------AIAAEATAAGSFLQFWGY--FPGLPSTW----------VW  116 (478)
T ss_pred             ccchhhhhhhccCCcCCceeeHHHHHHHHH----------HHHhhhhhhhhhhccccc--cccccccc----------cc
Confidence            699999999999999999999999999999          888888777777665511  12222100          00


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      .+.++.++.++++.+|.+|+|.+++++.+.+.++......++
T Consensus       117 ~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~i  158 (478)
T PF00324_consen  117 GILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFI  158 (478)
T ss_pred             cchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence            125577888889999999999999999999999887766555

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.11  E-value=3.7e-05  Score=67.81  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++++||.+||+.||...+++++..|..+..    ++++.+   |...... ..+..+        .+  ...
T Consensus        61 ~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~----~~~~~~---~~~~~~~-~~~~~~--------~~--~~~  122 (474)
T TIGR03813        61 KGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTF----GAVSLA---FIGPEAT-VDESLA--------GN--KLY  122 (474)
T ss_pred             CCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HhcCccc-cCcccc--------cc--cHH
Confidence            59999999999999999999999999998744443321    111111   2111100 000010        00  001


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCG  114 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~  114 (156)
                      .-..+.++..+++.+|.+|+|.+++++++.+.++
T Consensus       123 ~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~  156 (474)
T TIGR03813       123 VLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG  156 (474)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            1123444456778999999999999998765543

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.96  E-value=0.00011  Score=65.89  Aligned_cols=95  Identities=14%  Similarity=0.027  Sum_probs=58.9

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++++||.+||+++|...++..++.|.+..       ...+...|.   ++.  +.++.        +  ..+
T Consensus        65 ~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~-------~~~~~~~y~---~~~--~~~~~--------~--~~~  122 (507)
T TIGR00910        65 EGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIY-------FILGALSYI---LKF--PALNE--------D--PII  122 (507)
T ss_pred             CCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH---hcC--chhcc--------C--cHH
Confidence            5999999999999999999999988888762222111       111222333   211  11110        0  001


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAI  117 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I  117 (156)
                      ......++..+++.+|.+|+|.+++++++..+++..+
T Consensus       123 ~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i  159 (507)
T TIGR00910       123 KFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILI  159 (507)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            1223344556788999999999999998866555444

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.83  E-value=0.0003  Score=59.65  Aligned_cols=87  Identities=8%  Similarity=0.025  Sum_probs=69.8

Q ss_pred             cchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcchh
Q psy4780           3 ENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPD   82 (156)
Q Consensus         3 saY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~d   82 (156)
                      +-|.|.++.+|+..|++.+|..++-...          .++...|..+.+++....   ++.|.               .
T Consensus        65 ~~~~~~~~~~Gk~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l---~~tp~---------------~  116 (359)
T TIGR00912        65 NFSEILSKYLGKILGRLLSILFILYFFL----------IAAYLIRIFADFIKTYLL---PRTPI---------------I  116 (359)
T ss_pred             CHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhc---CCCCH---------------H
Confidence            4689999999999999999988876666          777888988888876542   22232               4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4780          83 FLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAI  117 (156)
Q Consensus        83 ~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I  117 (156)
                      ..+..+.+++.+++..|+|..+|++.+...+....
T Consensus       117 ~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~  151 (359)
T TIGR00912       117 VIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL  151 (359)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence            55677778888999999999999999998876655

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=96.99  E-value=0.0049  Score=56.32  Aligned_cols=94  Identities=16%  Similarity=0.006  Sum_probs=75.4

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||=.+|+.+-.+|-+||-+||+-.+.|.+          ..++--.+-+..++..++..   .|               
T Consensus       108 sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v----------~~~~El~aa~~vi~yW~p~~---v~---------------  159 (541)
T COG0833         108 SGSFSTYATRFVDPAFGFALGWNYWLNWAV----------TLPLELTAASLVIQYWFPDT---VP---------------  159 (541)
T ss_pred             CCchhhhhhhhcCchHHHHHHHHHHHHHHH----------HhhHHHHHHHHhhhhhcCCC---CC---------------
Confidence            477889999999999999999999999999          76665555566666665432   12               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ++.|..++..++..+|..|+|.-+..++.++.+|+....-++
T Consensus       160 ~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fi  201 (541)
T COG0833         160 PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFI  201 (541)
T ss_pred             hHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHH
Confidence            367788888889999999999999999999999986554444

>TIGR00814 stp serine transporter

Probab=96.59  E-value=0.039  Score=48.53  Aligned_cols=97  Identities=8%  Similarity=-0.095  Sum_probs=71.9

Q ss_pred             CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc-cchhHhhhhccccccCCcc
Q psy4780           2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI-SNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~-~~~p~~~~~~~~~~~~~~~   80 (156)
                      .+-++|+++.+|+.+|.+.++...+-...          ...+.+++.++.+++++.+.. .+.|.              
T Consensus        66 ~~i~~~~~~~fGk~~G~ii~~lY~~~~~~----------i~~aY~~~~~~~~~~fl~~~~~~~~p~--------------  121 (397)
T TIGR00814        66 EDITEVVEEHFGKNWGILITLLYFFAIYP----------ILLIYSVAITNDSASFLVNQLGTAPPL--------------  121 (397)
T ss_pred             CCHHHHHHHHcCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCCCcH--------------
Confidence            34578999999999999999999998888          767777777777777664311 11111              


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ..+.++++++++.+++..|.|...|+|.+...........+.
T Consensus       122 ~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~  163 (397)
T TIGR00814       122 RGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS  163 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            124566777777899999999999999999977766555444

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PHA02764 hypothetical protein; Provisional

Probab=96.37  E-value=0.002  Score=56.00  Aligned_cols=35  Identities=11%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhH
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMV   35 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~   35 (156)
                      +||.|.|.++++|+.+||+.||.+.+++..|.|.+
T Consensus        76 AGGdYVYISRAFGP~~GFLvG~a~WLtl~~G~Pal  110 (399)
T PHA02764         76 NGGDYAYIRTAFSSKFYTIFGISLWLTYVLSQPIL  110 (399)
T ss_pred             CCceEEEhHHhhCccHHHHHHHHHHHHHHhhcchh
Confidence            69999999999999999999999999999955544

>KOG1289|consensus

Probab=95.24  E-value=0.2  Score=46.05  Aligned_cols=100  Identities=16%  Similarity=0.069  Sum_probs=73.9

Q ss_pred             CCcchhHHHHH----hhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhcccccc
Q psy4780           1 MGENVVYTYVS----VGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDL   76 (156)
Q Consensus         1 aGsaY~Y~y~~----~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~   76 (156)
                      +||-|-.+.+.    +|++.+|++||...+.+..          ..|++..+.++-+.....-..+++..          
T Consensus       113 sGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~----------~~aSi~~S~A~~i~~~v~l~np~y~~----------  172 (550)
T KOG1289|consen  113 SGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQAT----------GVASITYSLAQLILGAVSLTNPNYEP----------  172 (550)
T ss_pred             CCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh----------hchhhhHHHHHHHHHHHhhcCCCCcc----------
Confidence            46777766655    5778899999999999999          88888888888777776543343321          


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780          77 LGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF  120 (156)
Q Consensus        77 ~~~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f  120 (156)
                      ...+.......+..+...+|+...|--+|+|.+-+..+......
T Consensus       173 ~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i  216 (550)
T KOG1289|consen  173 TNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVI  216 (550)
T ss_pred             cceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            11223455667778889999999999999999988777655443

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=94.13  E-value=0.84  Score=38.20  Aligned_cols=88  Identities=15%  Similarity=0.021  Sum_probs=69.0

Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcchhHH
Q psy4780           5 VVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFL   84 (156)
Q Consensus         5 Y~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~d~~   84 (156)
                      +.|..+.+|+..|.+.+-...+-++.          ..+.+.|.++..++...-   |+.|.               ...
T Consensus        65 ~~~~~~~~Gk~lg~ii~~~~~l~~l~----------~~~~~lr~~~~~i~~~~l---p~TP~---------------~~i  116 (320)
T PF03845_consen   65 VEISEKLFGKWLGKIINLLYILYFLL----------ISALVLREFSEFIKTYLL---PETPI---------------WVI  116 (320)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhc---CcCCH---------------HHH
Confidence            57889999999999999999999999          999999999998887652   34443               455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780          85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF  120 (156)
Q Consensus        85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f  120 (156)
                      ...+.+++.+....|.+.-+|.+.+.-.+-....-+
T Consensus       117 ~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~  152 (320)
T PF03845_consen  117 ILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLL  152 (320)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888999999999999777655554444333

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=93.25  E-value=1.4  Score=38.76  Aligned_cols=105  Identities=12%  Similarity=-0.046  Sum_probs=69.0

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +|+.|.|-.+..|+.+|++.+|.+.+-.--   .  --+--+|+++-..+  +..+++....+               ..
T Consensus        53 ~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP---~--~aiPRtaa~s~e~~--i~p~~~~~~~~---------------~~  110 (378)
T TIGR00796        53 VGGGYDSLSARIGKVFGILFTVILYLTIGP---L--FAIPRTATVSFEMG--IAPLLHSPTSL---------------LA  110 (378)
T ss_pred             cCCCHHHHHHHhChHHHHHHHHHHHHHHHh---c--hhhhHHHHHHHHHH--HHhccCcccch---------------HH
Confidence            478899999999999999999998876654   0  00001344554444  33344321000               01


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGEL  128 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~  128 (156)
                      .-...+++..+.-.++.++.|...++.+++|-.+......++ ..|..
T Consensus       111 l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~li-i~g~~  157 (378)
T TIGR00796       111 LFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALI-IKALL  157 (378)
T ss_pred             HHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHH-HHHHH
Confidence            123445555555668999999999999999999988887777 55543

transmembrane helical spanners.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=93.16  E-value=4.3  Score=35.60  Aligned_cols=92  Identities=11%  Similarity=0.030  Sum_probs=62.9

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc-cchhHhhhhccccccCCcchhHH
Q psy4780           6 VYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI-SNFTIATVGELHEDLLGKYPDFL   84 (156)
Q Consensus         6 ~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~-~~~p~~~~~~~~~~~~~~~~d~~   84 (156)
                      +-+++.+|+.++++++....+-.-.          ...+-..+-++.++++++... .+.+               +...
T Consensus        69 ~~a~~~lG~~g~~~~~~~~~~~~y~----------ll~AYisg~g~~~~~~l~~~~~~~~~---------------~~~~  123 (394)
T PF03222_consen   69 SMAEKYLGKKGGIVIGISYLFLLYA----------LLVAYISGGGSILSSLLGNQLGTDLS---------------PWLS  123 (394)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHH----------HHHHHHHccHHHHHHHHHHhcCCCCc---------------HHHH
Confidence            3467889999999998876553333          334455555666666665321 1111               2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ++++.+++..+...|.|...|.|.+++..+......+.
T Consensus       124 ~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~  161 (394)
T PF03222_consen  124 SLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILV  161 (394)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677778888899999999999999998877776555

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=92.15  E-value=1.8  Score=39.51  Aligned_cols=70  Identities=37%  Similarity=0.573  Sum_probs=46.2

Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCCCCCCCCcCHHHHHHHHHHHHHhh
Q psy4780          83 FLAFFV--CLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG  153 (156)
Q Consensus        83 ~~A~li--vlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~~~~~l~~ypDF~a~g~i~~~~~~~~  153 (156)
                      .++++.  ..+++++.......+++..++.++++.....+.....+. +.+.++++||+++.+++++++.+..
T Consensus       106 ~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~ii~l~~~ln~  177 (557)
T TIGR00906       106 LWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKL-NYDGLAEYPDFFAVCLILLLAVLLS  177 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc-cCCcccccchHHHHHHHHHHHHHHH
Confidence            444433  456677777788888899999888875544443322222 2233568899999988888877654

>PRK10483 tryptophan permease; Provisional

Probab=89.90  E-value=12  Score=33.39  Aligned_cols=91  Identities=15%  Similarity=0.034  Sum_probs=58.3

Q ss_pred             hHHHHHhhHHHHHHHHHHH-HHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcchhHH
Q psy4780           6 VYTYVSVGEFWAFVIGWNI-ILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFL   84 (156)
Q Consensus         6 ~Y~y~~~Ge~~afivGW~l-iLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~d~~   84 (156)
                      +-+++.+|+.+..+.+.+. .+-|.+          ..|-+ .+-++-+++.++....+.|.               ..-
T Consensus        77 tma~~~LG~~g~~i~~~s~lfl~Y~L----------l~AYi-sg~g~il~~~l~~~~~~i~~---------------~~~  130 (414)
T PRK10483         77 TITKDLLGKGWNVVNGISIAFVLYIL----------TYAYI-SASGSILHHTFAEMSLNVPA---------------RAA  130 (414)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHH----------HHHHH-hCcHHHHHHHHHhcCCCCcH---------------HHH
Confidence            5678899998887665544 345666          43332 23344455555321112221               244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      +.++.+++..+...|.|...|+|.++...+.......+
T Consensus       131 ~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~  168 (414)
T PRK10483        131 GFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTF  168 (414)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999999999999999998887765554443

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=88.21  E-value=15  Score=32.57  Aligned_cols=87  Identities=7%  Similarity=0.052  Sum_probs=55.8

Q ss_pred             hHHHHHhhHHHHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHHHH----HHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           6 VYTYVSVGEFWAFVIGWNIIL-EHMIGKHMVCKHMIGAASVARA----WSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         6 ~Y~y~~~Ge~~afivGW~liL-ey~i~~~~~~~~~~~~A~va~~----~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +-+++.+|+.++++++....+ -|.+           ..+-..+    .+..++++++..   .|               
T Consensus        69 ~~a~~~LG~~g~~i~~~~y~fl~y~l-----------l~AYisg~g~il~~~l~~~~~~~---i~---------------  119 (403)
T PRK15132         69 TLAKRYLGRYGQWLTGFSMMFLMYAL-----------TAAYISGAGELLASSISDWTGIS---MS---------------  119 (403)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHH-----------HHHHHhCcHHHHHHHHHHhccCC---CC---------------
Confidence            457899999999999887766 4444           2333333    333333333221   11               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT  121 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi  121 (156)
                      .....+.++++...+.+.|.|...|+|.++...+.......
T Consensus       120 ~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~  160 (403)
T PRK15132        120 PTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVM  160 (403)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            12445666777777889999999999999887766555443

>KOG1286|consensus

Probab=84.57  E-value=4.3  Score=37.50  Aligned_cols=115  Identities=25%  Similarity=0.327  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhc---cccccCCcchhHHHHHH-
Q psy4780          13 GEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGE---LHEDLLGKYPDFLAFFV-   88 (156)
Q Consensus        13 Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~---~~~~~~~~~~d~~A~li-   88 (156)
                      |+...--.|-.+++.|++          +  .++.-.+.+.-..++-+   +|.. .|.   +...   ..-+.+++.+ 
T Consensus        55 G~~l~~~gp~s~iisf~i----------~--g~~~~~~~~~~~E~~~~---~P~~-aGs~~~ya~~---~i~e~~aF~~g  115 (554)
T KOG1286|consen   55 GSALRNGGPPSLLISFII----------A--GIAALLSALCLGEFAVR---FPVS-AGSFYTYAYR---FVGESLAFAIG  115 (554)
T ss_pred             cHHHhccCChhHHHHHHH----------H--HHHHHHHHHHHHHHhee---cccc-cccceeeeee---eeCcHHHHHHH
Confidence            444444556788889988          3  34445555555565543   3321 111   1111   1124566555 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc--CCCCCCCCcCHHHHHHHHHHHHHhh
Q psy4780          89 -CLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGEL--HEDLLGKYPDFLAFFVCLGYALLLG  153 (156)
Q Consensus        89 -vlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~--~~~~l~~ypDF~a~g~i~~~~~~~~  153 (156)
                       ..++.++.......+++..+++...+       .+..+..  +.+....+|||+++.+++.+....+
T Consensus       116 Wny~l~y~i~~a~e~~a~s~~~~~w~~-------~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~  176 (554)
T KOG1286|consen  116 WNYLLEYVIGLAAEARAWSSYLDYWTG-------ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLA  176 (554)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhc-------cccccccccCCCCCccHHHHHHHHHHHHHHHHhh
Confidence             78999999999999999999999871       3333332  3334688999999999999888765

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=84.42  E-value=31  Score=31.18  Aligned_cols=91  Identities=10%  Similarity=-0.100  Sum_probs=60.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc--cchhHhhhhccccccCCcchhHH
Q psy4780           7 YTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI--SNFTIATVGELHEDLLGKYPDFL   84 (156)
Q Consensus         7 Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~--~~~p~~~~~~~~~~~~~~~~d~~   84 (156)
                      -+++.+|+.++.+.+-...+-.-.          -..+-..+....+++++.+..  ...|               ..+.
T Consensus        87 v~~~~lG~~g~~i~~ilYff~ly~----------ll~aY~~~itn~l~sfl~~ql~~~~~~---------------r~l~  141 (443)
T PRK13629         87 TVEEHFGKTGGVVITFLYFFAICP----------LLWIYGVTITNTFMTFWENQLGFAPLN---------------RGFV  141 (443)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhcCcCCcc---------------HHHH
Confidence            467889999999988776654333          222222334444444432210  0111               1466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780          85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI  122 (156)
Q Consensus        85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii  122 (156)
                      ++++++++..+...|.|.-.|+|.++...+..+...+.
T Consensus       142 slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~  179 (443)
T PRK13629        142 ALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLIS  179 (443)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999999988887766555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	6e-08

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 28/101 (27%)

Query: 7   YTYVSVGE-FWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFT 65
           + + ++G+      +   + + ++I            A  A+ ++GY   L    I+ F 
Sbjct: 75  FIHKAIGDNIITGALSILLWMSYVIS----------IALFAKGFAGYFLPLINAPINTFN 124

Query: 66  IATVGELHEDLLGKYPDFLAFFVCLGYALLL--GAASVARA 104
           I                     +   +  L   G+ +V RA
Sbjct: 125 I---------------AITEIGIVAFFTALNFFGSKAVGRA 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.08
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.88
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.57

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.08  E-value=1.2e-09  Score=92.17  Aligned_cols=101  Identities=14%  Similarity=0.046  Sum_probs=83.2

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...++|..          ..++.+++++.|++.+++......|               
T Consensus        70 ~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~---------------  124 (445)
T 3l1l_A           70 PGGSYAYARRCFGPFLGYQTNVLYWLACWI----------GNIAMVVIGVGYLSYFFPILKDPWV---------------  124 (445)
T ss_dssp             TTTHHHHHHHHSCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHTTTTCGGGGSHHH---------------
T ss_pred             CCCchhhHHhHcCChHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCccccccHH---------------
Confidence            589999999999999999999999999999          8899999999998877653211111               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGE  127 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~  127 (156)
                      ....+.++.++++.+|.+|+|..+|++.+.+.++......+. ..+.
T Consensus       125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~-i~~~  170 (445)
T 3l1l_A          125 LTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIA-VFGW  170 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HTTS
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            246677888899999999999999999999999887766555 4554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.88  E-value=3.5e-08  Score=83.31  Aligned_cols=100  Identities=16%  Similarity=0.131  Sum_probs=81.5

Q ss_pred             CCcchhHHHHHhhHHH-HHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCc
Q psy4780           1 MGENVVYTYVSVGEFW-AFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGK   79 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~-afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~   79 (156)
                      +||.|.|+++.+||.+ +..+||...++|.+          ..|..+++++.|++++++...+  |.             
T Consensus        69 ~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~--~~-------------  123 (444)
T 3gia_A           69 NAGPIAFIHKAIGDNIITGALSILLWMSYVI----------SIALFAKGFAGYFLPLINAPIN--TF-------------  123 (444)
T ss_dssp             TTTHHHHHHHHHCSSHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHTTCCCC--HH-------------
T ss_pred             CCcHHHhHHHHhCcchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhCCCCc--hH-------------
Confidence            5899999999999963 44458999999999          9999999999999998864211  11             


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy4780          80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVG  126 (156)
Q Consensus        80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg  126 (156)
                      .....+.++.++++.+|.+|+|.+++++.+.+.++......++ ..+
T Consensus       124 ~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~i-i~~  169 (444)
T 3gia_A          124 NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFI-FAG  169 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            1246678888899999999999999999999999988876655 444

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.57  E-value=1.5e-07  Score=80.76  Aligned_cols=95  Identities=15%  Similarity=0.050  Sum_probs=73.1

Q ss_pred             CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780           1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY   80 (156)
Q Consensus         1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~   80 (156)
                      +||.|.|+++.+||.+||++||...++|++          ..++.+.+.+.+++.+++.  ++++.          ....
T Consensus        72 ~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--p~~~~----------~~~~  129 (511)
T 4djk_A           72 EGGVFAWVSNTLGPRWGFAAISFGYLQIAI----------GFIPMLYFVLGALSYILKW--PALNE----------DPIT  129 (511)
T ss_dssp             --CHHHHHHHHHCHHHHHHHHHHHHHHHHH----------HTHHHHHHHHHHHHTTTTC--GGGTS----------CSSH
T ss_pred             CCChhhhHHhhcCchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcC--ccccc----------CcHH
Confidence            599999999999999999999999999999          7777777778887655421  22210          0112


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4780          81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAI  117 (156)
Q Consensus        81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I  117 (156)
                      ....+.++.++++.+|.+|+|.+++++.+.+.++..+
T Consensus       130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~  166 (511)
T 4djk_A          130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILL  166 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            3456777888899999999999999999988876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00