Psyllid ID: psy4781

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTIT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEcccccccccccccccHHHHHHcEEEEEEEEEcccEEcccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccHHHHHcHHHHHHHHHcHHHHHHHHHHEccEEEcc
Coil and Loop (DISEMBL)
MGVKGSAFINSFLTLANLMVMGIVIVVGFYYgrldnwinegggflpygisgVVAGAATCFYAYVGFDKCWKCLIRigvrttit
Flexible Loop (DISEMBL)
MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTIT
Low Complexity Region (SEG)
MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTIT
Disordered region (IsUnstruct)
******AFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT***
Disordered Region (DISOPRED)
MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTIT
Disordered Region (DISEMBL)
MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTIT
Disordered Region (DISPRO)
***KGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTIT
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTTIT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q8BLQ7	635	Cationic amino acid trans	yes	N/A	0.795	0.103	0.484	3e-12
P18581	657	Low affinity cationic ami	no	N/A	0.795	0.100	0.433	1e-11
B5D5N9	657	Low affinity cationic ami	no	N/A	0.795	0.100	0.433	1e-11
P52569	658	Low affinity cationic ami	yes	N/A	0.795	0.100	0.422	5e-11
P30825	629	High affinity cationic am	no	N/A	0.783	0.103	0.420	5e-11
O43246	635	Cationic amino acid trans	no	N/A	0.795	0.103	0.424	6e-11
B3TP03	654	Low affinity cationic ami	no	N/A	0.783	0.099	0.411	8e-11
P30823	624	High affinity cationic am	no	N/A	0.783	0.104	0.421	8e-11
Q09143	622	High affinity cationic am	no	N/A	0.783	0.104	0.432	9e-11
A8I499	657	Low affinity cationic ami	no	N/A	0.795	0.100	0.4	3e-10

>sp|Q8BLQ7|CTR4_MOUSE Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 46/66 (69%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFY 61
           G + S+++N   +  +L+V+  +IV+GF   R  NW  E GGF P+G SG++AG ATCFY
Sbjct: 187 GARVSSWLNHTFSAISLIVILFIIVLGFILARPHNWSAEEGGFAPFGFSGILAGTATCFY 246

Query: 62  AYVGFD 67
           A+VGFD
Sbjct: 247 AFVGFD 252

Involved in the transport of the cationic amino acids (arginine, lysine and ornithine).
Mus musculus (taxid: 10090)

>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 24/90 (26%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW-INE-------------------- 40
           GVK SA++N F T  N++V+  V+V GF  G + NW I+E                    
Sbjct: 183 GVKESAWVNKFFTAINILVLLFVMVAGFVKGNVANWKISEEFLKNISASAREPPSENGTS 242

Query: 41  ---GGGFLPYGISGVVAGAATCFYAYVGFD 67
               GGF+PYG +G +AGAATCFYA+VGFD
Sbjct: 243 IYGAGGFMPYGFTGTLAGAATCFYAFVGFD 272

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Mus musculus (taxid: 10090)

>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 24/90 (26%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW-INE-------------------- 40
           GVK SA++N F T  N++V+  V+V GF  G + NW I+E                    
Sbjct: 183 GVKESAWVNKFFTAINILVLLFVMVAGFVKGNVANWKISEEFLKNISASAREPPSENGTS 242

Query: 41  ---GGGFLPYGISGVVAGAATCFYAYVGFD 67
               GGF+PYG +G +AGAATCFYA+VGFD
Sbjct: 243 IYGAGGFMPYGFTGTLAGAATCFYAFVGFD 272

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Rattus norvegicus (taxid: 10116)

>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 24/90 (26%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW-INE-------------------- 40
           GVK SA++N   T  N++V+  V+V GF  G + NW I+E                    
Sbjct: 183 GVKESAWVNKVFTAVNILVLLFVMVAGFVKGNVANWKISEEFLKNISASAREPPSENGTS 242

Query: 41  ---GGGFLPYGISGVVAGAATCFYAYVGFD 67
               GGF+PYG +G +AGAATCFYA+VGFD
Sbjct: 243 IYGAGGFMPYGFTGTLAGAATCFYAFVGFD 272

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Homo sapiens (taxid: 9606)

>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 23/88 (26%)

Query: 3   VKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW-------------------INEG-- 41
           VK SA +N   T  N++V+G ++V GF  G + NW                     EG  
Sbjct: 183 VKESAMVNKIFTCINVLVLGFIMVSGFVKGSVKNWQLTEEDFGNTSGRLCLNNDTKEGKP 242

Query: 42  --GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+P+G SGV++GAATCFYA+VGFD
Sbjct: 243 GVGGFMPFGFSGVLSGAATCFYAFVGFD 270

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Homo sapiens (taxid: 9606)

>sp|O43246|CTR4_HUMAN Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4 PE=2 SV=3

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 46/66 (69%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFY 61
           G + S+++N   +  +L+V+  ++++GF   +  NW  + GGF P+G SGV+AG A+CFY
Sbjct: 187 GARVSSWLNHTFSAISLLVILFIVILGFILAQPHNWSADEGGFAPFGFSGVMAGTASCFY 246

Query: 62  AYVGFD 67
           A+VGFD
Sbjct: 247 AFVGFD 252

Involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Homo sapiens (taxid: 9606)

>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 25/90 (27%)

Query: 3   VKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW-INE--------------------- 40
           VK SA++N   T  N++V+  V++ GF  G +DNW I+E                     
Sbjct: 183 VKESAWVNKIFTAINILVLLFVMISGFVKGDVDNWRISEEYLINLSEIAENFSSYKNVTS 242

Query: 41  ---GGGFLPYGISGVVAGAATCFYAYVGFD 67
               GGF+PYG +G +AGAATCFYA+VGFD
Sbjct: 243 IYGSGGFMPYGFTGTLAGAATCFYAFVGFD 272

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Gallus gallus (taxid: 9031)

>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 18/83 (21%)

Query: 3   VKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW-INEG-----------------GGF 44
           VK SA +N   T  N++V+  ++V GF  G ++NW + E                  GGF
Sbjct: 183 VKESAMVNKIFTCINVLVLCFIMVSGFVKGSIENWQLTENKSSPLCGNNDTNVKYGEGGF 242

Query: 45  LPYGISGVVAGAATCFYAYVGFD 67
           +P+G SGV++GAATCFYA+VGFD
Sbjct: 243 MPFGFSGVLSGAATCFYAFVGFD 265

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 16/81 (19%)

Query: 3   VKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW-INEG---------------GGFLP 46
           VK SA +N   T  N++V+  ++V GF  G + NW + E                GGF+P
Sbjct: 183 VKESAMVNKIFTCINVLVLCFIVVSGFVKGSIKNWQLTEKNFSCNNNDTNVKYGEGGFMP 242

Query: 47  YGISGVVAGAATCFYAYVGFD 67
           +G SGV++GAATCFYA+VGFD
Sbjct: 243 FGFSGVLSGAATCFYAFVGFD 263

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Mus musculus (taxid: 10090)

>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 24/90 (26%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW------------------------ 37
           GVK SA++N   T  N++V+  V+V GF  G + N                         
Sbjct: 183 GVKESAWVNKVFTAVNILVLLFVMVAGFVKGNVANRKISEEFLKNISASAREPPSENGTS 242

Query: 38  INEGGGFLPYGISGVVAGAATCFYAYVGFD 67
           I   GGF+PYG +G +AGAATCFYA+VGFD
Sbjct: 243 IYGAGGFMPYGFTGTLAGAATCFYAFVGFD 272

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
328776541	654	PREDICTED: cationic amino acid transport	0.819	0.103	0.691	2e-18
193599192	502	PREDICTED: cationic amino acid transport	0.807	0.133	0.632	5e-18
350426305	648	PREDICTED: cationic amino acid transport	0.819	0.104	0.676	7e-18
380022543	648	PREDICTED: cationic amino acid transport	0.819	0.104	0.676	9e-18
156545878	663	PREDICTED: cationic amino acid transport	0.819	0.102	0.676	2e-17
340723636	648	PREDICTED: cationic amino acid transport	0.819	0.104	0.661	2e-17
357625552	655	cationic amino acid transporter 4 [Danau	0.819	0.103	0.617	1e-16
332019280	727	Cationic amino acid transporter 4 [Acrom	0.819	0.093	0.588	1e-16
194749681	654	GF24139 [Drosophila ananassae] gi|190624	0.807	0.102	0.641	2e-16
195175164	667	GL11910 [Drosophila persimilis] gi|19411	0.819	0.101	0.617	3e-16

>gi|328776541|ref|XP_624184.3| PREDICTED: cationic amino acid transporter 4-like isoform 2 [Apis mellifera]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 54/68 (79%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK SA +NS LTL NL VMG+VI +GF Y +L NW  E GGFLPYG +GV+AGAATCF
Sbjct: 195 LGVKSSATVNSLLTLVNLGVMGLVIGLGFAYAKLSNWSCEHGGFLPYGFTGVLAGAATCF 254

Query: 61  YAYVGFDK 68
           YAYVGFD 
Sbjct: 255 YAYVGFDS 262

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193599192|ref|XP_001945208.1| PREDICTED: cationic amino acid transporter 4-like, partial [Acyrthosiphon pisum]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK S+++NSFLTL NL VM +++V G+YYG  DNW +  GGF+PYG +G++AGAATCF
Sbjct: 57  VGVKTSSYMNSFLTLVNLGVMAVIVVAGYYYGNSDNW-SSDGGFMPYGTTGIIAGAATCF 115

Query: 61  YAYVGFDK 68
           YAYVGFD 
Sbjct: 116 YAYVGFDS 123

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426305|ref|XP_003494398.1| PREDICTED: cationic amino acid transporter 4-like [Bombus impatiens]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 54/68 (79%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK SA +NS LT+ NL VMG+VI +G YY +L NW  E GGFLPYG SGV+AGAATCF
Sbjct: 189 LGVKCSATVNSLLTIVNLGVMGLVIGLGIYYAKLSNWSCENGGFLPYGFSGVLAGAATCF 248

Query: 61  YAYVGFDK 68
           YA+VGFD 
Sbjct: 249 YAFVGFDS 256

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022543|ref|XP_003695102.1| PREDICTED: cationic amino acid transporter 4-like [Apis florea]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 54/68 (79%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK SA +NS LT+ NL VMG+VI +GF Y +L NW  E GGFLPYG +GV+AGAATCF
Sbjct: 189 LGVKSSATVNSLLTIVNLGVMGLVIGLGFAYAKLSNWGCEHGGFLPYGFTGVLAGAATCF 248

Query: 61  YAYVGFDK 68
           YAYVGFD 
Sbjct: 249 YAYVGFDS 256

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545878|ref|XP_001606549.1| PREDICTED: cationic amino acid transporter 4-like [Nasonia vitripennis]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 53/68 (77%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK SA +NS LTL NL VM +VI +GFYY  L NW  +G GFLPYGI+GV AGAATCF
Sbjct: 189 LGVKCSAAVNSLLTLVNLGVMALVICLGFYYADLGNWNFQGHGFLPYGITGVFAGAATCF 248

Query: 61  YAYVGFDK 68
           YA+VGFD 
Sbjct: 249 YAFVGFDS 256

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723636|ref|XP_003400195.1| PREDICTED: cationic amino acid transporter 4-like [Bombus terrestris]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK SA +NS LT+ NL VMG+VI +G YY +  NW  E GGFLPYG SGV+AGAATCF
Sbjct: 189 LGVKCSATVNSLLTIVNLGVMGLVIGLGIYYAKFSNWSCENGGFLPYGFSGVLAGAATCF 248

Query: 61  YAYVGFDK 68
           YA+VGFD 
Sbjct: 249 YAFVGFDS 256

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625552|gb|EHJ75954.1| cationic amino acid transporter 4 [Danaus plexippus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 54/68 (79%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK SA+IN+ LT+ NL V+ +VI +GFYY  + NW  + GGF+PYG SGV+AGAATCF
Sbjct: 188 VGVKTSAYINNGLTILNLTVISLVIFLGFYYADITNWSEKNGGFMPYGFSGVLAGAATCF 247

Query: 61  YAYVGFDK 68
           YA+VGFD 
Sbjct: 248 YAFVGFDS 255

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019280|gb|EGI59789.1| Cationic amino acid transporter 4 [Acromyrmex echinatior]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 51/68 (75%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK SA +NS LT+ NL VM +V+V+G YY  + NW ++ GG LPYG  G++ GAATCF
Sbjct: 272 LGVKTSATVNSLLTIINLAVMALVVVLGIYYADITNWSSQNGGLLPYGFGGIITGAATCF 331

Query: 61  YAYVGFDK 68
           YAYVGFD 
Sbjct: 332 YAYVGFDS 339

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194749681|ref|XP_001957267.1| GF24139 [Drosophila ananassae] gi|190624549|gb|EDV40073.1| GF24139 [Drosophila ananassae]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 49/67 (73%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFY 61
           GVK +A  NS LTL N+ VM +VI VGF+Y    NW    GGFLPYGI GV+AGAATCFY
Sbjct: 170 GVKATAVFNSLLTLVNIAVMILVISVGFWYADTKNWSESEGGFLPYGIGGVIAGAATCFY 229

Query: 62  AYVGFDK 68
           A+VGFD 
Sbjct: 230 AFVGFDS 236

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195175164|ref|XP_002028330.1| GL11910 [Drosophila persimilis] gi|194117502|gb|EDW39545.1| GL11910 [Drosophila persimilis]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 50/68 (73%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +GVK +A  NS LTL N+ VM +VI VGF+Y    NW    GGFLPYG+ GV+AGAATCF
Sbjct: 188 IGVKATAMFNSLLTLVNIAVMILVISVGFWYADTKNWSEAEGGFLPYGVGGVIAGAATCF 247

Query: 61  YAYVGFDK 68
           YA+VGFD 
Sbjct: 248 YAFVGFDS 255

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
FB|FBgn0036984	669	CG13248 [Drosophila melanogast	0.795	0.098	0.636	1.2e-17
UNIPROTKB|F1RSU0	429	SLC7A1 "Uncharacterized protei	0.313	0.060	0.769	1.5e-14
UNIPROTKB|F1N5P6	629	SLC7A1 "Uncharacterized protei	0.409	0.054	0.631	2.7e-14
UNIPROTKB|F1P388	624	SLC7A1 "Uncharacterized protei	0.313	0.041	0.769	3.4e-14
UNIPROTKB|P30825	629	SLC7A1 "High affinity cationic	0.409	0.054	0.631	3.4e-14
UNIPROTKB|E2QU34	629	SLC7A1 "Uncharacterized protei	0.313	0.041	0.769	3.5e-14
MGI|MGI:99828	657	Slc7a2 "solute carrier family	0.313	0.039	0.769	6.3e-14
RGD|68387	657	Slc7a2 "solute carrier family	0.313	0.039	0.769	6.3e-14
UNIPROTKB|F1MAM0	704	Slc7a2 "Low affinity cationic	0.313	0.036	0.769	7.5e-14
UNIPROTKB|F1NW41	609	SLC7A2 "Low affinity cationic	0.313	0.042	0.769	1.1e-13

FB|FBgn0036984 CG13248 [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 42/66 (63%), Positives = 49/66 (74%)

Query:     2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFY 61
             GVK +A  NS LTL N+ VM +VI VGF+Y    NW    GGFLPYG+ GV+AGAATCFY
Sbjct:   189 GVKATAVFNSLLTLVNIAVMVLVISVGFWYADGKNWSEAEGGFLPYGVGGVIAGAATCFY 248

Query:    62 AYVGFD 67
             A+VGFD
Sbjct:   249 AFVGFD 254

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

UNIPROTKB|F1RSU0 SLC7A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 20/26 (76%), Positives = 25/26 (96%)

Query:    42 GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+P+G SGV++GAATCFYA+VGFD
Sbjct:   245 GGFMPFGFSGVLSGAATCFYAFVGFD 270

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N5P6 SLC7A1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 124 (48.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query:    34 LDNWINEG----GGFLPYGISGVVAGAATCFYAYVGFD 67
             L+N   EG    GGF+P+G SGV++GAATCFYA+VGFD
Sbjct:   233 LNNDTKEGKPGVGGFMPFGFSGVLSGAATCFYAFVGFD 270

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
 Identities = 20/26 (76%), Positives = 25/26 (96%)

Query:    42 GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+PYG+ GV++GAATCFYA+VGFD
Sbjct:   246 GGFMPYGLKGVLSGAATCFYAFVGFD 271

GO:0016021 "integral to membrane" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

UNIPROTKB|P30825 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query:    34 LDNWINEG----GGFLPYGISGVVAGAATCFYAYVGFD 67
             L+N   EG    GGF+P+G SGV++GAATCFYA+VGFD
Sbjct:   233 LNNDTKEGKPGVGGFMPFGFSGVLSGAATCFYAFVGFD 270

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006810 "transport" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E2QU34 SLC7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 122 (48.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 20/26 (76%), Positives = 25/26 (96%)

Query:    42 GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+P+G SGV++GAATCFYA+VGFD
Sbjct:   245 GGFMPFGFSGVLSGAATCFYAFVGFD 270

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:99828 Slc7a2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 2" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
 Identities = 20/26 (76%), Positives = 24/26 (92%)

Query:    42 GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+PYG +G +AGAATCFYA+VGFD
Sbjct:   247 GGFMPYGFTGTLAGAATCFYAFVGFD 272

GO:0000064 "L-ornithine transmembrane transporter activity" evidence=IDA

GO:0002537 "nitric oxide production involved in inflammatory response" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=IMP;IDA

GO:0005289 "high affinity arginine transmembrane transporter activity" evidence=IDA

GO:0006809 "nitric oxide biosynthetic process" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IDA;IMP

GO:0015181 "arginine transmembrane transporter activity" evidence=ISO;IMP;IDA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IDA

GO:0015807 "L-amino acid transport" evidence=IDA;IMP

GO:0015809 "arginine transport" evidence=ISO;IMP;IDA

GO:0015819 "lysine transport" evidence=IDA

GO:0015822 "ornithine transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IC;IDA

GO:0042116 "macrophage activation" evidence=IMP

GO:0043030 "regulation of macrophage activation" evidence=IMP

GO:0050727 "regulation of inflammatory response" evidence=IMP

RGD|68387 Slc7a2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
 Identities = 20/26 (76%), Positives = 24/26 (92%)

Query:    42 GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+PYG +G +AGAATCFYA+VGFD
Sbjct:   247 GGFMPYGFTGTLAGAATCFYAFVGFD 272

GO:0000064 "L-ornithine transmembrane transporter activity" evidence=ISO

GO:0002537 "nitric oxide production involved in inflammatory response" evidence=ISO

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005289 "high affinity arginine transmembrane transporter activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IC

GO:0006809 "nitric oxide biosynthetic process" evidence=ISO

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=ISO

GO:0015181 "arginine transmembrane transporter activity" evidence=ISO;IDA;TAS

GO:0015189 "L-lysine transmembrane transporter activity" evidence=ISO

GO:0015807 "L-amino acid transport" evidence=ISO

GO:0015809 "arginine transport" evidence=ISO;IDA

GO:0015819 "lysine transport" evidence=ISO

GO:0015822 "ornithine transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0042116 "macrophage activation" evidence=ISO

GO:0043030 "regulation of macrophage activation" evidence=ISO

GO:0050727 "regulation of inflammatory response" evidence=ISO

UNIPROTKB|F1MAM0 Slc7a2 "Low affinity cationic amino acid transporter 2" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
 Identities = 20/26 (76%), Positives = 24/26 (92%)

Query:    42 GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+PYG +G +AGAATCFYA+VGFD
Sbjct:   247 GGFMPYGFTGTLAGAATCFYAFVGFD 272

GO:0000064 "L-ornithine transmembrane transporter activity" evidence=IEA

GO:0002537 "nitric oxide production involved in inflammatory response" evidence=IEA

GO:0005289 "high affinity arginine transmembrane transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006809 "nitric oxide biosynthetic process" evidence=IEA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA

GO:0043030 "regulation of macrophage activation" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

UNIPROTKB|F1NW41 SLC7A2 "Low affinity cationic amino acid transporter 2" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 20/26 (76%), Positives = 24/26 (92%)

Query:    42 GGFLPYGISGVVAGAATCFYAYVGFD 67
             GGF+PYG +G +AGAATCFYA+VGFD
Sbjct:   247 GGFMPYGFTGTLAGAATCFYAFVGFD 272

GO:0000064 "L-ornithine transmembrane transporter activity" evidence=IEA

GO:0002537 "nitric oxide production involved in inflammatory response" evidence=IEA

GO:0005289 "high affinity arginine transmembrane transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006809 "nitric oxide biosynthetic process" evidence=IEA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA

GO:0043030 "regulation of macrophage activation" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	1e-18
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	9e-07

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNW----INEGGGFLPYGISGVVAGA 56
            GVK SA++N   T  N++V+  VI+ GF    + NW        GGF+PYG +GV++GA
Sbjct: 178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGA 237

Query: 57  ATCFYAYVGFD 67
           ATCF+A++GFD
Sbjct: 238 ATCFFAFIGFD 248

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 44.4 bits (105), Expect = 9e-07
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFY 61
           G K S  +N  L +  +  + +   +G  +   +N+      F+P G  GV A  A  F+
Sbjct: 151 GAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTP----FMPMGFGGVGAATALVFF 206

Query: 62  AYVGFD 67
           A++GF+
Sbjct: 207 AFIGFE 212

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.62
PRK10644	445	arginine:agmatin antiporter; Provisional	99.43
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.42
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.4
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.39
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.39
PRK10655	438	potE putrescine transporter; Provisional	99.39
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.39
TIGR00909	429	2A0306 amino acid transporter.	99.38
PRK10746	461	putative transport protein YifK; Provisional	99.36
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.35
PRK10249	458	phenylalanine transporter; Provisional	99.34
PRK15049	499	L-asparagine permease; Provisional	99.33
PRK10836	489	lysine transporter; Provisional	99.31
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.3
PRK11021	410	putative transporter; Provisional	99.3
KOG1286|consensus	554		99.3
PRK11387	471	S-methylmethionine transporter; Provisional	99.29
PRK10580	457	proY putative proline-specific permease; Provision	99.28
PRK10238	456	aromatic amino acid transporter; Provisional	99.27
TIGR00911	501	2A0308 L-type amino acid transporter.	99.25
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.24
TIGR00913	478	2A0310 amino acid permease (yeast).	99.23
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.22
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.18
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.15
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.13
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.09
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.09
KOG1287|consensus	479		99.0
TIGR00930	953	2a30 K-Cl cotransporter.	98.95
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.93
PRK15238	496	inner membrane transporter YjeM; Provisional	98.83
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.71
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.66
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.52
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.39
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.68
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	97.29
PF03845	320	Spore_permease: Spore germination protein; InterPr	96.61
KOG1289|consensus	550		96.6
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	95.22
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	94.31
PRK10483	414	tryptophan permease; Provisional	88.81
PRK09664	415	tryptophan permease TnaB; Provisional	87.18
PRK15132	403	tyrosine transporter TyrP; Provisional	86.31
PLN03074	473	auxin influx permease; Provisional	83.72

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.62  E-value=1.8e-15  Score=112.08  Aligned_cols=80  Identities=41%  Similarity=0.806  Sum_probs=71.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc----CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN----EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI   76 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~----~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~   76 (83)
                      +|+|.++|+|++++.+|+++++++++.|+.+.+.+|+..    ..+++.|+|+.+++.++..++|+|.|||.+++++||+
T Consensus       178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~  257 (557)
T TIGR00906       178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV  257 (557)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc
Confidence            589999999999999999999999999998877777652    1235788899999999999999999999999999999


Q ss_pred             cCCC
Q psy4781          77 GVRT   80 (83)
Q Consensus        77 k~~~   80 (83)
                      |||.
T Consensus       258 knP~  261 (557)
T TIGR00906       258 KNPQ  261 (557)
T ss_pred             cCcc
Confidence            9998

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.43  E-value=8.9e-13  Score=94.78  Aligned_cols=82  Identities=10%  Similarity=0.137  Sum_probs=64.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT   80 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~   80 (83)
                      +|+|..+|+|++++.+|+++++++++.++...+.+++.+..+.....++.++..++..++|+|.|||.+++++||+|||.
T Consensus       142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~  221 (445)
T PRK10644        142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK  221 (445)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence            58999999999999999999999988887766554443311001112456788888899999999999999999999997


Q ss_pred             -CC
Q psy4781          81 -TI   82 (83)
Q Consensus        81 -~~   82 (83)
                       ++
T Consensus       222 r~i  224 (445)
T PRK10644        222 RNV  224 (445)
T ss_pred             cch
Confidence             43

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.42  E-value=1.4e-12  Score=93.76  Aligned_cols=82  Identities=21%  Similarity=0.354  Sum_probs=64.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCC-CccCcC-HHHHHHHHHHHHHhhccHHHHHhhhhhhcC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGG-GFLPYG-ISGVVAGAATCFYAYVGFDKCWKCLIRIGV   78 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~-~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~aeE~k~   78 (83)
                      +|+|.++|+|++++++|++.++++++.|+...+.+++.+... .....| +.+++.++...+|+|.|||.+++.+||+||
T Consensus       144 ~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~  223 (445)
T PRK11357        144 RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKN  223 (445)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcC
Confidence            589999999999999999999888888886555555532110 011122 567888999999999999999999999999


Q ss_pred             CC-CC
Q psy4781          79 RT-TI   82 (83)
Q Consensus        79 ~~-~~   82 (83)
                      |. ++
T Consensus       224 P~r~i  228 (445)
T PRK11357        224 PGKTM  228 (445)
T ss_pred             ccccc
Confidence            97 43

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.40  E-value=1.2e-12  Score=95.03  Aligned_cols=78  Identities=21%  Similarity=0.269  Sum_probs=69.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-----------cccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781           2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-----------DNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCW   70 (83)
Q Consensus         2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-----------~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~   70 (83)
                      ++|..++++.++..+|+++++.+|++|....-.           +|+. .|++|+|+|+.|++.+...++|+|.|-|.+.
T Consensus       145 sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~-~hGGffP~G~~g~~~~~~~v~Faf~GiElvG  223 (462)
T COG1113         145 SVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLW-DHGGFFPNGFLGFLSALQIVMFAFGGIELVG  223 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccc-cCCCcCCCchHHHHHHHHHHHHHHhhHHHHH
Confidence            589999999999999999999999999765321           1222 3789999999999999999999999999999


Q ss_pred             hhhhhhcCCC
Q psy4781          71 KCLIRIGVRT   80 (83)
Q Consensus        71 ~~aeE~k~~~   80 (83)
                      ..|+|.|+|.
T Consensus       224 itA~Et~dP~  233 (462)
T COG1113         224 ITAAEAKDPE  233 (462)
T ss_pred             HHHHhhcChh
Confidence            9999999998

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.39  E-value=1.9e-12  Score=93.41  Aligned_cols=80  Identities=16%  Similarity=0.290  Sum_probs=65.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-------ccccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-------DNWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWK   71 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-------~~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~   71 (83)
                      +|+|..+++|++++++|++.++.+++.|+.....       .++.+  ..+++.|+|+.++..++..++|+|.|||.++.
T Consensus       123 ~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~  202 (446)
T PRK10197        123 LSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTI  202 (446)
T ss_pred             HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHH
Confidence            4899999999999999999999998888764321       11111  12346788999999999999999999999999


Q ss_pred             hhhhhcCCC
Q psy4781          72 CLIRIGVRT   80 (83)
Q Consensus        72 ~aeE~k~~~   80 (83)
                      .+||+|||.
T Consensus       203 ~a~E~knP~  211 (446)
T PRK10197        203 AAAESDTPE  211 (446)
T ss_pred             HHHHhcChh
Confidence            999999997

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.39  E-value=1.8e-12  Score=93.12  Aligned_cols=82  Identities=11%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT   80 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~   80 (83)
                      +|+|.++++|++.+++++++++.+++.|+.+.+.+++.+......+.+..+++.++..++|+|.|||.++..+||+|||.
T Consensus       138 ~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~  217 (435)
T PRK10435        138 LGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK  217 (435)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc
Confidence            48999999999999999988887777777665544322111112234678899999999999999999999999999997


Q ss_pred             -CC
Q psy4781          81 -TI   82 (83)
Q Consensus        81 -~~   82 (83)
                       ++
T Consensus       218 r~i  220 (435)
T PRK10435        218 RTV  220 (435)
T ss_pred             ccc
Confidence             54

>PRK10655 potE putrescine transporter; Provisional

Probab=99.39  E-value=2.3e-12  Score=92.36  Aligned_cols=79  Identities=13%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcC---HHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYG---ISGVVAGAATCFYAYVGFDKCWKCLIRIG   77 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g---~~g~~~a~~~~~fay~G~~~v~~~aeE~k   77 (83)
                      +|+|.++|+|++.+..+++.++++++.++.+.+.+++.+.   +.|.+   +.++..++..++|+|.|||.+++++||+|
T Consensus       140 ~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k  216 (438)
T PRK10655        140 GGARITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAA---WNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVE  216 (438)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCC---cCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Confidence            4899999999999999999999888888776666555431   22322   36788889999999999999999999999


Q ss_pred             CCC-CC
Q psy4781          78 VRT-TI   82 (83)
Q Consensus        78 ~~~-~~   82 (83)
                      ||. ++
T Consensus       217 ~P~r~i  222 (438)
T PRK10655        217 NPERNV  222 (438)
T ss_pred             Cccccc
Confidence            998 54

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.39  E-value=1.9e-12  Score=93.81  Aligned_cols=80  Identities=21%  Similarity=0.385  Sum_probs=65.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-----c----cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-----D----NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKC   69 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-----~----~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v   69 (83)
                      +|+|..+|+|++++.+|++.++.+++.|+.....     +    ++.+  ..+++.|+|+.+++.++...+|+|.|||.+
T Consensus       151 ~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~  230 (469)
T PRK11049        151 ATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELV  230 (469)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHH
Confidence            4899999999999999999999999998864311     1    1211  123456788889999999999999999999


Q ss_pred             HhhhhhhcCCC
Q psy4781          70 WKCLIRIGVRT   80 (83)
Q Consensus        70 ~~~aeE~k~~~   80 (83)
                      ++++||+|||.
T Consensus       231 ~~~a~E~knP~  241 (469)
T PRK11049        231 GTTAAETKDPE  241 (469)
T ss_pred             HHHHHHhcCHh
Confidence            99999999997

>TIGR00909 2A0306 amino acid transporter

Probab=99.38  E-value=2.4e-12  Score=91.76  Aligned_cols=76  Identities=24%  Similarity=0.428  Sum_probs=67.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT   80 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~   80 (83)
                      +|+|.++|+|++++.+|++.++++++.++.+.+.+++.+    +.|.++.++..++...+|+|.|||.+.+.+||+|||+
T Consensus       150 ~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~  225 (429)
T TIGR00909       150 LGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTP----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE  225 (429)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc
Confidence            489999999999999999999888888887766666665    5566788899999999999999999999999999996

>PRK10746 putative transport protein YifK; Provisional

Probab=99.36  E-value=3.5e-12  Score=92.52  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=64.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--c---------ccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYG--R---------LDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKC   69 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~--~---------~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v   69 (83)
                      +|+|..+++|.+++.+|++.++.+++.++...  .         .+|+.+ ++++.|+|+.|+..++..++|+|.|+|.+
T Consensus       141 ~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~g~~g~~~~~~~~~faf~G~e~v  219 (461)
T PRK10746        141 AAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTE-HGGFFAGGWKGFLTALCIVVASYQGVELI  219 (461)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccC-CCCcCcccHHHHHHHHHHHHHHhcCHHHH
Confidence            48999999999999999999988888776321  1         112222 33466788999999999999999999999


Q ss_pred             HhhhhhhcCCC
Q psy4781          70 WKCLIRIGVRT   80 (83)
Q Consensus        70 ~~~aeE~k~~~   80 (83)
                      +..+||+|||.
T Consensus       220 ~~~a~E~knP~  230 (461)
T PRK10746        220 GITAGEAKNPQ  230 (461)
T ss_pred             HHHHHHhcChh
Confidence            99999999997

>TIGR00908 2A0305 ethanolamine permease

Probab=99.35  E-value=3.6e-12  Score=91.41  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=63.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc----CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN----EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI   76 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~----~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~   76 (83)
                      +|+|.++|+|++++++|+++++++++.+..+.+..++.+    ..+++.|.++.+++.+....+|+|.|||.+++++||+
T Consensus       138 ~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~  217 (442)
T TIGR00908       138 LGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET  217 (442)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999888777665544443333321    1233556778889999999999999999999999999


Q ss_pred             cCCC
Q psy4781          77 GVRT   80 (83)
Q Consensus        77 k~~~   80 (83)
                      |||.
T Consensus       218 k~P~  221 (442)
T TIGR00908       218 KNPK  221 (442)
T ss_pred             cCcc
Confidence            9997

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10249 phenylalanine transporter; Provisional

Probab=99.34  E-value=4.8e-12  Score=91.58  Aligned_cols=80  Identities=15%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc---cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR---LD---NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKC   72 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~---~~---~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~   72 (83)
                      +|+|.++|+|.+++.+|++.++.+++.++....   .+   ++.+  .++++.|+|+.+++.+....+|+|.|||.++.+
T Consensus       152 ~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~  231 (458)
T PRK10249        152 VNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGIT  231 (458)
T ss_pred             hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            589999999999999999998888887765321   10   1111  123456788999999999999999999999999


Q ss_pred             hhhhcCCC
Q psy4781          73 LIRIGVRT   80 (83)
Q Consensus        73 aeE~k~~~   80 (83)
                      +||+|||.
T Consensus       232 a~E~~~P~  239 (458)
T PRK10249        232 AAEARDPE  239 (458)
T ss_pred             HHHhcCHh
Confidence            99999997

>PRK15049 L-asparagine permease; Provisional

Probab=99.33  E-value=6.3e-12  Score=92.07  Aligned_cols=80  Identities=18%  Similarity=0.285  Sum_probs=64.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-------ccc--cCCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-D-------NWI--NEGGGFLPYGISGVVAGAATCFYAYVGFDKCW   70 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-~-------~~~--~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~   70 (83)
                      +|+|.++|+|++++++|++.++++++.++..... .       ++.  ..++++.|+|+.+++.+...++|+|.|||.++
T Consensus       161 ~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~  240 (499)
T PRK15049        161 IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVG  240 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHH
Confidence            4899999999999999999999988888654211 1       011  11345678888888888889999999999999


Q ss_pred             hhhhhhcCCC
Q psy4781          71 KCLIRIGVRT   80 (83)
Q Consensus        71 ~~aeE~k~~~   80 (83)
                      .++||+|||.
T Consensus       241 ~~aeE~knP~  250 (499)
T PRK15049        241 TAAGECKDPQ  250 (499)
T ss_pred             HHHHHhcChh
Confidence            9999999997

>PRK10836 lysine transporter; Provisional

Probab=99.31  E-value=9.5e-12  Score=90.62  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----------ccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR----------LDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCW   70 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~----------~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~   70 (83)
                      +|+|..+++|++++.+|++.++++++.++....          .+++.+ +++..+.|+.++++++...+|+|.|||.++
T Consensus       147 ~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~faf~G~e~~~  225 (489)
T PRK10836        147 ISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTI-GDAPFAGGFAAMIGVAMIVGFSFQGTELIG  225 (489)
T ss_pred             HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCC-CCCCCcccHHHHHHHHHHHHHHHccHHHHH
Confidence            478999999999999999999888877765421          112321 111234577888888888899999999999


Q ss_pred             hhhhhhcCCC
Q psy4781          71 KCLIRIGVRT   80 (83)
Q Consensus        71 ~~aeE~k~~~   80 (83)
                      .++||+|||.
T Consensus       226 ~~a~E~knP~  235 (489)
T PRK10836        226 IAAGESEDPA  235 (489)
T ss_pred             HHHHHhcCHH
Confidence            9999999996

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.30  E-value=1e-11  Score=89.34  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=63.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc----cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR---LD----NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWK   71 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~---~~----~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~   71 (83)
                      +|+|..+++|++++++|++.++.+++.++....   +.    ++.+  .++++.|+|+.+++.++...+|+|.|||.++.
T Consensus       143 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~  222 (452)
T TIGR01773       143 YSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTI  222 (452)
T ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhH
Confidence            488999999999999999999888887764211   11    1111  12345677888999999999999999999999


Q ss_pred             hhhhhcCCC
Q psy4781          72 CLIRIGVRT   80 (83)
Q Consensus        72 ~aeE~k~~~   80 (83)
                      ++||+|||.
T Consensus       223 ~a~E~k~P~  231 (452)
T TIGR01773       223 AAAESSNPI  231 (452)
T ss_pred             HHHhhcChh
Confidence            999999997

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11021 putative transporter; Provisional

Probab=99.30  E-value=1.5e-11  Score=87.65  Aligned_cols=78  Identities=14%  Similarity=0.124  Sum_probs=56.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT   80 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~   80 (83)
                      +|+|.++|+|++++++++..++++...+  ..+..++..  .++.+.++.++..++...+|+|.|||.+++++||+|||.
T Consensus       132 ~Gv~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~  207 (410)
T PRK11021        132 RGASSSANLQTVIALLIVALVVAIWWAG--DIKPADIPF--PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE  207 (410)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchhcCCC--CCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc
Confidence            5899999999999977665544332222  122222211  113345788999999999999999999999999999997


Q ss_pred             -CC
Q psy4781          81 -TI   82 (83)
Q Consensus        81 -~~   82 (83)
                       ++
T Consensus       208 k~i  210 (410)
T PRK11021        208 RDF  210 (410)
T ss_pred             ccc
Confidence             44

>KOG1286|consensus

Probab=99.30  E-value=2.2e-12  Score=95.97  Aligned_cols=81  Identities=32%  Similarity=0.602  Sum_probs=71.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc-----CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781           2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN-----EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI   76 (83)
Q Consensus         2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~-----~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~   76 (83)
                      |+|.+..++++++++.++++.+++..|....|..+|..     +++.|.|+|+.|+++++..++|+|.|+|.++..+||+
T Consensus       179 e~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~  258 (554)
T KOG1286|consen  179 EVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA  258 (554)
T ss_pred             ceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc
Confidence            57788999999999999999999999998877555532     2567999999999999999999999999999999999


Q ss_pred             cCCC-CC
Q psy4781          77 GVRT-TI   82 (83)
Q Consensus        77 k~~~-~~   82 (83)
                      |||+ +|
T Consensus       259 kNP~k~I  265 (554)
T KOG1286|consen  259 KNPRKAI  265 (554)
T ss_pred             cCCcccc
Confidence            9998 54

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.29  E-value=1.8e-11  Score=88.74  Aligned_cols=80  Identities=14%  Similarity=0.057  Sum_probs=62.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc------ccc----ccc-CCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR------LDN----WIN-EGGGFLPYGISGVVAGAATCFYAYVGFDKC   69 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~------~~~----~~~-~~~~~~p~g~~g~~~a~~~~~fay~G~~~v   69 (83)
                      +|+|..+|+|++++.+|++.++++++.|+....      ..+    +.+ ...++.|+|..+++.++..++|+|.|||.+
T Consensus       146 ~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~  225 (471)
T PRK11387        146 VSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELI  225 (471)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHH
Confidence            489999999999999999999988888765321      011    110 112344667778899999999999999999


Q ss_pred             HhhhhhhcCCC
Q psy4781          70 WKCLIRIGVRT   80 (83)
Q Consensus        70 ~~~aeE~k~~~   80 (83)
                      ++.+||+|||.
T Consensus       226 ~~~a~E~knP~  236 (471)
T PRK11387        226 GIAAGETENPA  236 (471)
T ss_pred             HHHHHHhcChh
Confidence            99999999997

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.28  E-value=2.3e-11  Score=87.80  Aligned_cols=80  Identities=21%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--c---c---cccccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYY--G---R---LDNWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCW   70 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~--~---~---~~~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~   70 (83)
                      +|+|..+|+|++++.+|++.++++++.|+..  .   +   ..+..+  .++++.|+|+.+++.+...++|+|.|||.++
T Consensus       140 ~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~  219 (457)
T PRK10580        140 MSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIG  219 (457)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHH
Confidence            5899999999999999999998887776421  1   1   111111  1234567888899999999999999999999


Q ss_pred             hhhhhhcCCC
Q psy4781          71 KCLIRIGVRT   80 (83)
Q Consensus        71 ~~aeE~k~~~   80 (83)
                      ..+||+|||.
T Consensus       220 ~~a~E~knP~  229 (457)
T PRK10580        220 ITAGEAKDPE  229 (457)
T ss_pred             HHHHHhcChh
Confidence            9999999997

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.27  E-value=2.5e-11  Score=87.81  Aligned_cols=80  Identities=19%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc---cccc--CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGR---LD---NWIN--EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKC   72 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~---~~---~~~~--~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~   72 (83)
                      +|+|..+|+|++++.+|++.+++++++++....   .+   .+.+  .++++.|+|+.+++.++...+|+|.|||.++..
T Consensus       143 ~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~  222 (456)
T PRK10238        143 TNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGIT  222 (456)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            489999999999999999998888776654311   11   1111  123456788889999999999999999999999


Q ss_pred             hhhhcCCC
Q psy4781          73 LIRIGVRT   80 (83)
Q Consensus        73 aeE~k~~~   80 (83)
                      +||+|||.
T Consensus       223 aeE~knP~  230 (456)
T PRK10238        223 AAEADNPE  230 (456)
T ss_pred             HHhhcChh
Confidence            99999997

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.25  E-value=4e-11  Score=87.44  Aligned_cols=80  Identities=15%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc-C-CCCcc--CcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWIN-E-GGGFL--PYGISGVVAGAATCFYAYVGFDKCWKCLIRI   76 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~-~-~~~~~--p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~   76 (83)
                      +|+|.++|+|++++++|+++++++++.++.....++.++ . ...+.  +.+..++..+...++|+|.|||.+++++||+
T Consensus       182 ~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~  261 (501)
T TIGR00911       182 LSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV  261 (501)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh
Confidence            589999999999999999999998888876543222111 0 00111  1346688889999999999999999999999


Q ss_pred             cCCC
Q psy4781          77 GVRT   80 (83)
Q Consensus        77 k~~~   80 (83)
                      |||.
T Consensus       262 knP~  265 (501)
T TIGR00911       262 KNPY  265 (501)
T ss_pred             cCch
Confidence            9997

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.24  E-value=3.9e-11  Score=86.92  Aligned_cols=82  Identities=28%  Similarity=0.461  Sum_probs=63.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccC-CC----Cc-cCcCHHHHHHHHHHHHHhhccHHHHHhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINE-GG----GF-LPYGISGVVAGAATCFYAYVGFDKCWKCLI   74 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~-~~----~~-~p~g~~g~~~a~~~~~fay~G~~~v~~~ae   74 (83)
                      +|+|.++|+|++++++|+++++++++.++...+.+++.+. .+    ++ ....+.++..++..++|+|.|||.++.++|
T Consensus       140 ~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~  219 (468)
T TIGR03810       140 RGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSA  219 (468)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHh
Confidence            5899999999999999999999999988776554433221 00    11 112355677888899999999999999999


Q ss_pred             hhcCCCCC
Q psy4781          75 RIGVRTTI   82 (83)
Q Consensus        75 E~k~~~~~   82 (83)
                      |+||+.++
T Consensus       220 e~k~~k~i  227 (468)
T TIGR03810       220 RAEKRSDV  227 (468)
T ss_pred             hccCcccc
Confidence            99986654

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.23  E-value=5.2e-11  Score=86.17  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----------ccccCCCCccCc----CHHHHHHHHHHHHHhhccH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLD----------NWINEGGGFLPY----GISGVVAGAATCFYAYVGF   66 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~----------~~~~~~~~~~p~----g~~g~~~a~~~~~fay~G~   66 (83)
                      +|+|.++|+|++++.+|++.++.+++.++.....+          ++.+ ++++.|.    ++.++..+....+|+|.||
T Consensus       135 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~af~G~  213 (478)
T TIGR00913       135 FGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHD-PGAFAGGTIGGRFKGVCSVFVTAAFSFGGT  213 (478)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCC-CCCCCCCCccchHHHHHHHHHHHHhhhccH
Confidence            58999999999999999999998888776543211          1111 1223332    2678889999999999999


Q ss_pred             HHHHhhhhhhcCCC
Q psy4781          67 DKCWKCLIRIGVRT   80 (83)
Q Consensus        67 ~~v~~~aeE~k~~~   80 (83)
                      |.+++++||+|||.
T Consensus       214 e~~~~~a~E~knP~  227 (478)
T TIGR00913       214 ELVALTAGEAANPR  227 (478)
T ss_pred             HHHHHHHHhhcChh
Confidence            99999999999997

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.22  E-value=9.1e-11  Score=85.13  Aligned_cols=82  Identities=22%  Similarity=0.385  Sum_probs=62.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccC-CCCcc---CcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINE-GGGFL---PYGISGVVAGAATCFYAYVGFDKCWKCLIRI   76 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~-~~~~~---p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~   76 (83)
                      +|+|.++|+|++++.+|++.++++++.++...+.+++... .....   +.++.++..++...+|+|.|||.+++++||+
T Consensus       146 ~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~  225 (473)
T TIGR00905       146 RGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA  225 (473)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5899999999999999999999999888765544433211 01111   2245678889999999999999999999999


Q ss_pred             cCCCCC
Q psy4781          77 GVRTTI   82 (83)
Q Consensus        77 k~~~~~   82 (83)
                      ||+.++
T Consensus       226 k~~r~i  231 (473)
T TIGR00905       226 KNKSDV  231 (473)
T ss_pred             hccccc
Confidence            993243

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.18  E-value=1.3e-10  Score=84.44  Aligned_cols=80  Identities=16%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc---cccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDN---WINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIG   77 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~---~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k   77 (83)
                      +|+|.++|+|++.+++|++.++++++.++.+.+.++   +.....+..+....+++.+....+|+|.|||.+++++||+|
T Consensus       161 ~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k  240 (475)
T TIGR03428       161 IGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK  240 (475)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence            489999999999999999888888777665443211   11110111222234566777888999999999999999999


Q ss_pred             CCC
Q psy4781          78 VRT   80 (83)
Q Consensus        78 ~~~   80 (83)
                      ||.
T Consensus       241 nP~  243 (475)
T TIGR03428       241 NPR  243 (475)
T ss_pred             Ccc
Confidence            997

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.15  E-value=2.1e-11  Score=88.25  Aligned_cols=82  Identities=29%  Similarity=0.353  Sum_probs=62.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhh-h-cccc--cc---ccCC--CCccCcC--------HHHHHHHHHHHHHhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFY-Y-GRLD--NW---INEG--GGFLPYG--------ISGVVAGAATCFYAY   63 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~-~-~~~~--~~---~~~~--~~~~p~g--------~~g~~~a~~~~~fay   63 (83)
                      +|+|.++|+|.+++.+|++.++.+++.++. . .+.+  +.   ..+.  .+..|+|        +.+++.++..++|+|
T Consensus       134 ~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af  213 (478)
T PF00324_consen  134 FGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAF  213 (478)
T ss_pred             hhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccc
Confidence            489999999999999999999999998822 1 2111  11   1000  1123444        789999999999999


Q ss_pred             ccHHHHHhhhhhhcCCC-CC
Q psy4781          64 VGFDKCWKCLIRIGVRT-TI   82 (83)
Q Consensus        64 ~G~~~v~~~aeE~k~~~-~~   82 (83)
                      .|+|.++.++||+|||. +|
T Consensus       214 ~G~e~~a~~a~E~k~P~k~I  233 (478)
T PF00324_consen  214 VGFESIAILAEEAKNPRKTI  233 (478)
T ss_pred             ccccccccccccCCCchhhh
Confidence            99999999999999998 54

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.13  E-value=3.6e-10  Score=80.53  Aligned_cols=79  Identities=25%  Similarity=0.399  Sum_probs=63.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccC--cCHHHHHHHHHHHHHhhccHHHHHhhhhhhcC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLP--YGISGVVAGAATCFYAYVGFDKCWKCLIRIGV   78 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p--~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~   78 (83)
                      +|+|.++|+|++.+++|+++++++++.++.+.+.++.... ..+.+  ....++..+....+|+|.|||.+++.+||+||
T Consensus       151 ~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~kn  229 (466)
T COG0531         151 RGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLF-APFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKN  229 (466)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccC-CCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcC
Confidence            5899999999999999999999999999888765432210 01111  22456888999999999999999999999999


Q ss_pred             CC
Q psy4781          79 RT   80 (83)
Q Consensus        79 ~~   80 (83)
                      |.
T Consensus       230 p~  231 (466)
T COG0531         230 PK  231 (466)
T ss_pred             cc
Confidence            85

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.09  E-value=2.4e-10  Score=82.92  Aligned_cols=79  Identities=18%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---------cccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL---------DNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWK   71 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~---------~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~   71 (83)
                      +|+|..+++|+++++++++.++++++..+...+.         +++.+..+++.|.|+ +++.++....|+|.|||.+++
T Consensus       160 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~~~  238 (482)
T TIGR00907       160 LPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGTAH  238 (482)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchhhH
Confidence            4789999999999999998887666555443221         111221113345554 566677778999999999999


Q ss_pred             hhhhhcCCC
Q psy4781          72 CLIRIGVRT   80 (83)
Q Consensus        72 ~aeE~k~~~   80 (83)
                      ++||+|||.
T Consensus       239 ~a~E~knP~  247 (482)
T TIGR00907       239 MAEEIENPE  247 (482)
T ss_pred             HHHhcCChh
Confidence            999999997

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.09  E-value=2.5e-10  Score=81.11  Aligned_cols=78  Identities=23%  Similarity=0.410  Sum_probs=62.6

Q ss_pred             CchhHHHHHHHHHHHHHH-HHHHHHHHhhhhhcccccccc---CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANL-MVMGIVIVVGFYYGRLDNWIN---EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI   76 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl-~~l~~~ii~g~~~~~~~~~~~---~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~   76 (83)
                      +|+|.++|+|++++.+++ ..++++++.++...+.+...+   ....+.|.++.+++.+....+|+|.|||.+++++||.
T Consensus       135 ~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~  214 (426)
T PF13520_consen  135 LGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN  214 (426)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc
Confidence            589999999999999999 677888888887765432221   1123556677788999999999999999999999998


Q ss_pred             cC
Q psy4781          77 GV   78 (83)
Q Consensus        77 k~   78 (83)
                      |+
T Consensus       215 k~  216 (426)
T PF13520_consen  215 KN  216 (426)
T ss_dssp             SS
T ss_pred             cc
Confidence            87

...

>KOG1287|consensus

Probab=99.00  E-value=1.3e-09  Score=79.96  Aligned_cols=79  Identities=19%  Similarity=0.288  Sum_probs=60.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---cccccCC-CCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL---DNWINEG-GGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRI   76 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~---~~~~~~~-~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~   76 (83)
                      .++|.++|+|+++|..|++++.+.++.|+.....   +|+.+.. ++. ..+...+..|.-..+|+|.|||...+.+||+
T Consensus       152 ~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~-~~~~g~i~lafysglfa~~GWd~lN~vteEi  230 (479)
T KOG1287|consen  152 FSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGS-DTDVGNIALAFYSGLFAFSGWDYLNYVTEEI  230 (479)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccC-cCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence            3689999999999999999999999999985433   3333210 011 1123345567777899999999999999999


Q ss_pred             cCCC
Q psy4781          77 GVRT   80 (83)
Q Consensus        77 k~~~   80 (83)
                      |||.
T Consensus       231 knP~  234 (479)
T KOG1287|consen  231 KNPR  234 (479)
T ss_pred             cCcc
Confidence            9997

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.95  E-value=1.7e-09  Score=84.67  Aligned_cols=82  Identities=10%  Similarity=-0.066  Sum_probs=58.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-----------cccccCCCCccCcCHHHHHHHHHHHHHhhccHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL-----------DNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKC   69 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~-----------~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v   69 (83)
                      +|+|.++|+|+++++++++.++.+++.++.....           ..+.....+..+.+..+++....+.|++|.||+..
T Consensus       220 ~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag  299 (953)
T TIGR00930       220 AGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG  299 (953)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999998888776542111           00111000012333345777888889999999999


Q ss_pred             HhhhhhhcCCC-CC
Q psy4781          70 WKCLIRIGVRT-TI   82 (83)
Q Consensus        70 ~~~aeE~k~~~-~~   82 (83)
                      ++++||+|+|+ +|
T Consensus       300 an~sgElKnP~r~I  313 (953)
T TIGR00930       300 ANISGDLKDPQKAI  313 (953)
T ss_pred             HHHHHhccChhhhh
Confidence            99999999998 44

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.93  E-value=4.1e-09  Score=76.47  Aligned_cols=79  Identities=15%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             CchhHHHHHHHHHHHH-HHHHHHHHHHhhhhhccc-c--ccccCCCCccCc--CHHHHHHHHHHHHHhhccHHHHHhhhh
Q psy4781           1 MGVKGSAFINSFLTLA-NLMVMGIVIVVGFYYGRL-D--NWINEGGGFLPY--GISGVVAGAATCFYAYVGFDKCWKCLI   74 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~-kl~~l~~~ii~g~~~~~~-~--~~~~~~~~~~p~--g~~g~~~a~~~~~fay~G~~~v~~~ae   74 (83)
                      +|+|.++|+|++.+.+ ++++++++++.|+..... +  .......++.|.  ++.++..+. .++|+|.|||.++..+|
T Consensus       140 ~gv~~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~  218 (474)
T TIGR03813       140 RGVAAFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVK  218 (474)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHH
Confidence            5899999999987554 566666777777653211 1  110000112332  333444333 46899999999999999


Q ss_pred             hhcCCC
Q psy4781          75 RIGVRT   80 (83)
Q Consensus        75 E~k~~~   80 (83)
                      |+|||.
T Consensus       219 E~knP~  224 (474)
T TIGR03813       219 DVDNPD  224 (474)
T ss_pred             hccCcc
Confidence            999997

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.83  E-value=2.6e-08  Score=72.80  Aligned_cols=80  Identities=14%  Similarity=0.128  Sum_probs=51.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhh-h-cccccc-ccC-CCCc----cCc--CHHHHHHHHHHHHHhhccHHHHH
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFY-Y-GRLDNW-INE-GGGF----LPY--GISGVVAGAATCFYAYVGFDKCW   70 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~-~-~~~~~~-~~~-~~~~----~p~--g~~g~~~a~~~~~fay~G~~~v~   70 (83)
                      +|+|.++|+|++.+.+++...+++++++.. . ....+. .+. ...+    .|.  +..+++.+...++|+|.|||.++
T Consensus       152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~  231 (496)
T PRK15238        152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG  231 (496)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence            589999999999998887655433333211 1 111111 010 0001    111  11368888888999999999999


Q ss_pred             hhhhhhcCCC
Q psy4781          71 KCLIRIGVRT   80 (83)
Q Consensus        71 ~~aeE~k~~~   80 (83)
                      ..+||+|||.
T Consensus       232 ~~a~E~~~p~  241 (496)
T PRK15238        232 GLVDKTENPE  241 (496)
T ss_pred             HHHHhccCCC
Confidence            9999999997

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.71  E-value=7.1e-08  Score=71.03  Aligned_cols=80  Identities=16%  Similarity=0.076  Sum_probs=49.2

Q ss_pred             CchhHHHHHHHHHHHHHH-HHHHHHHHhhhhhcccccc---ccCCCCccCcC-HHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANL-MVMGIVIVVGFYYGRLDNW---INEGGGFLPYG-ISGVVAGAATCFYAYVGFDKCWKCLIR   75 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl-~~l~~~ii~g~~~~~~~~~---~~~~~~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~aeE   75 (83)
                      +|+|.++|+|++.+.+.+ +.++++++.+......++.   ....+++.|.. ..+.+......+|+|.|||.++..+||
T Consensus       140 ~G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E  219 (507)
T TIGR00910       140 GGTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINE  219 (507)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            489999999998665444 4344455545443322211   11112344431 113334444568999999999999999


Q ss_pred             hcCCC
Q psy4781          76 IGVRT   80 (83)
Q Consensus        76 ~k~~~   80 (83)
                      +|||.
T Consensus       220 ~knP~  224 (507)
T TIGR00910       220 LENPG  224 (507)
T ss_pred             ccCCc
Confidence            99997

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.66  E-value=1.6e-08  Score=75.08  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--c-------ccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRL--D-------NWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWK   71 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~--~-------~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~   71 (83)
                      .|+|..|..+.++..+|++.++.|++.|+...-.  +       ++. .+.+.+++|+.|+.+....+-|+|.|-|.+..
T Consensus       177 ~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw-~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgi  255 (541)
T COG0833         177 FGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYW-HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGL  255 (541)
T ss_pred             hcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeee-cCCCCCCcchHHHHHHHhhheeeeeceeeeee
Confidence            4789999999999999999999999998764311  1       111 12345678999999999999999999999999


Q ss_pred             hhhhhcCCC-CC
Q psy4781          72 CLIRIGVRT-TI   82 (83)
Q Consensus        72 ~aeE~k~~~-~~   82 (83)
                      .|+|.|||. +|
T Consensus       256 aAgEs~nP~K~i  267 (541)
T COG0833         256 AAGESENPRKSI  267 (541)
T ss_pred             eecccCCchhhh
Confidence            999999997 44

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.52  E-value=3.2e-07  Score=64.32  Aligned_cols=77  Identities=16%  Similarity=0.272  Sum_probs=61.4

Q ss_pred             CchhHHHHHHHHHHHHHHHH-HHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHH-HHHHhhccHHHHHhhhhhhcC
Q psy4781           1 MGVKGSAFINSFLTLANLMV-MGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAA-TCFYAYVGFDKCWKCLIRIGV   78 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~-l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~-~~~fay~G~~~v~~~aeE~k~   78 (83)
                      .|+|..+|++.+++.+++.. ++++...+....+.+|+.|    ..++|+.+++.++. ...|+|.|+|.....++|.|+
T Consensus       132 ~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P----~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~  207 (359)
T TIGR00912       132 KGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLLP----VLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSK  207 (359)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccC----ccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCC
Confidence            48999999999999998877 3444444444445666666    66778888888887 889999999999999999998


Q ss_pred             CCC
Q psy4781          79 RTT   81 (83)
Q Consensus        79 ~~~   81 (83)
                      |..
T Consensus       208 ~~~  210 (359)
T TIGR00912       208 KKK  210 (359)
T ss_pred             hhh
Confidence            764

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.39  E-value=1.1e-06  Score=62.02  Aligned_cols=77  Identities=9%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHH-HHHhhhhhhcCC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFD-KCWKCLIRIGVR   79 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~-~v~~~aeE~k~~   79 (83)
                      +|+|..+|+|++++..|+..++++++.++.+.+.+|+.|..  ..+.++.+++.+....+++| |++ .+....+|.|+|
T Consensus       131 ~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~  207 (381)
T TIGR00837       131 LSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVA--LDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGN  207 (381)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcCc--cccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccC
Confidence            48999999999999999999999999998887777765521  11346778888889888888 775 688889998754


Q ss_pred             C
Q psy4781          80 T   80 (83)
Q Consensus        80 ~   80 (83)
                      +
T Consensus       208 ~  208 (381)
T TIGR00837       208 V  208 (381)
T ss_pred             H
Confidence            3

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00814 stp serine transporter

Probab=97.68  E-value=0.00016  Score=52.26  Aligned_cols=75  Identities=8%  Similarity=-0.103  Sum_probs=61.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhh----hhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCL----IRI   76 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~a----eE~   76 (83)
                      .|.|..+|++.++...+++.++++.+....+.+.+++...+  ....++..++.++..++|||.|+|.++.++    +|-
T Consensus       139 ~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~  216 (397)
T TIGR00814       139 FGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEY  216 (397)
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCC--cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHc
Confidence            48899999999999999999999999898888877764310  111246789999999999999999999998    555


Q ss_pred             c
Q psy4781          77 G   77 (83)
Q Consensus        77 k   77 (83)
                      +
T Consensus       217 ~  217 (397)
T TIGR00814       217 G  217 (397)
T ss_pred             C
Confidence            4

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=97.29  E-value=0.0014  Score=47.24  Aligned_cols=77  Identities=13%  Similarity=0.034  Sum_probs=57.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhc-------cHHHHHhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYV-------GFDKCWKCL   73 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~-------G~~~v~~~a   73 (83)
                      ++.|...++|+++|-++++.++++++.|+.+...+...+ .+. ...+ ..+..+..-..+.|+       ||-.+.++.
T Consensus       128 ~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~-~~~-~~~~-~~f~~g~l~GY~TmD~laal~fg~iiv~~i~  204 (378)
T TIGR00796       128 NPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGPILAA-SGA-YASQ-QAFSKGFLEGYLTMDALAALVFGIIVVNAIR  204 (378)
T ss_pred             CcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCcCCc-ccc-cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999998743322111 111 1111 356778888899999       999999999


Q ss_pred             h-hhcCCC
Q psy4781          74 I-RIGVRT   80 (83)
Q Consensus        74 e-E~k~~~   80 (83)
                      + |.|+|.
T Consensus       205 ~~g~~~~~  212 (378)
T TIGR00796       205 SRGVTKPK  212 (378)
T ss_pred             HhCCCCHH
Confidence            8 998886

transmembrane helical spanners.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.61  E-value=0.018  Score=40.05  Aligned_cols=76  Identities=14%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT   80 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~   80 (83)
                      .|.+.-+|...++..+-++.++++........+.+|+.|    ..+.|+..++.+.....+.|.|.+.......-+|+|.
T Consensus       130 ~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P----~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~  205 (320)
T PF03845_consen  130 KGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDNLLP----VLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK  205 (320)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeC----cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            478888998888777777777777766666677777777    7788999999998889999999999998888888764

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>KOG1289|consensus

Probab=96.60  E-value=0.0043  Score=46.73  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-ccc---------CCCCccCcCHHHHHHHHHHHHHhhccHHHHHhh
Q psy4781           3 VKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDN-WIN---------EGGGFLPYGISGVVAGAATCFYAYVGFDKCWKC   72 (83)
Q Consensus         3 v~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~-~~~---------~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~   72 (83)
                      .|.-+|++.+-+.+.++.+++.++.-+...+..+ +..         ...+..+.|| .+.-+.....|...|+|....+
T Consensus       196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~~~~wt~sGyDa~~H~  274 (550)
T KOG1289|consen  196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFFNPAWTMSGYDAAAHM  274 (550)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhccceeEEeccCchHHH
Confidence            4778899999999999888877776655432221 210         0112223455 3455566678999999999999


Q ss_pred             hhhhcCCC
Q psy4781          73 LIRIGVRT   80 (83)
Q Consensus        73 aeE~k~~~   80 (83)
                      +||+||+.
T Consensus       275 aEE~~nAs  282 (550)
T KOG1289|consen  275 AEETKNAS  282 (550)
T ss_pred             HHHhcchh
Confidence            99999986

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.22  E-value=0.15  Score=36.96  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=59.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781           2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIG   77 (83)
Q Consensus         2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k   77 (83)
                      |.|...|++++++..|++.++.+++.++.+.+.+++...+  ..+..+..++.+....++||.=...++.+....+
T Consensus       138 g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~--~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~  211 (394)
T PF03222_consen  138 GTKAVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAP--PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG  211 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccc--cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC
Confidence            6788999999999999999999999999888877654310  1234578899999999999987788888776665

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=94.31  E-value=0.13  Score=37.41  Aligned_cols=77  Identities=8%  Similarity=-0.031  Sum_probs=59.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCcc-CcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781           2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFL-PYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT   80 (83)
Q Consensus         2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~-p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~   80 (83)
                      |-+..-|.+.++...+++.++++.+.-..+.+.++....+  .. +.-+..++.+....+|+|..-..+..+..|.|++.
T Consensus       146 ~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~  223 (415)
T COG0814         146 GTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALP--SASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS  223 (415)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhccc--ccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch
Confidence            5577788999999999999988887777776655543210  11 34467899999999999999999999999998765

>PRK10483 tryptophan permease; Provisional

Probab=88.81  E-value=1.6  Score=32.14  Aligned_cols=74  Identities=5%  Similarity=-0.068  Sum_probs=49.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIR   75 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE   75 (83)
                      .|.|...|+++++...|++.+++.+...+.+.+.+++.+.. ...+..+..++.+.+..++||.=-..++.+-+.
T Consensus       144 ~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y  217 (414)
T PRK10483        144 LSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKY  217 (414)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHH
Confidence            37889999999999999999988888777777766553210 011112345677777777666544555555443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=87.18  E-value=2.4  Score=31.22  Aligned_cols=71  Identities=8%  Similarity=0.002  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcC-HHHHHHHHHHHHHhhccHHHHHhh
Q psy4781           2 GVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYG-ISGVVAGAATCFYAYVGFDKCWKC   72 (83)
Q Consensus         2 Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~   72 (83)
                      |.|...|+++++...|++.+++++.....+.+.+++.+......... +..++.+.+..++||.=-..++.+
T Consensus       144 gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl  215 (415)
T PRK09664        144 SSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSL  215 (415)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHH
Confidence            77899999999999999999988888888887766543110000001 234666666665555333344333

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=86.31  E-value=2.9  Score=30.59  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIR   75 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE   75 (83)
                      .|.|...|+++++...+++.+++++.....+.+.+++...     |.+..-++.+.+..++||.=-..++.+..-
T Consensus       137 ~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-----~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y  206 (403)
T PRK15132        137 VGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTL-----PLQQGLALSAIPVIFTSFGFHGSVPSIVSY  206 (403)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-----CccccHHHHHHHHHHHHhhCCcccHHHHHH
Confidence            3778999999999999999998888877877777766431     111123677777777766544555555443

>PLN03074 auxin influx permease; Provisional

Probab=83.72  E-value=11  Score=28.09  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCCC
Q psy4781          48 GISGVVAGAATCFYAYVGFDKCWKCLIRIGVRTT   81 (83)
Q Consensus        48 g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~~   81 (83)
                      ++...+.++..++|+|.|--....+=.|+|+|+.
T Consensus       231 ~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~  264 (473)
T PLN03074        231 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK  264 (473)
T ss_pred             hHHHHHHHHHHHHHHhcccccHHHHHHhccChhc
Confidence            4556777777889999999999999999999973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	2e-13
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	7e-09
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	1e-04

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 62.3 bits (152), Expect = 2e-13
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
            G K       F+ L  L+++G+ I  G         I       P  +SG++  +A  F
Sbjct: 142 FGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP---DLAPSAVSGMIFASAIFF 198

Query: 61  YAYVGFD 67
            +Y+GF 
Sbjct: 199 LSYMGFG 205

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 8/67 (11%), Positives = 28/67 (41%)

Query: 1   MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCF 60
           +G K    + +  T+  L+ +  + V G+++ R + ++             + +      
Sbjct: 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTL 201

Query: 61  YAYVGFD 67
           ++++G +
Sbjct: 202 WSFIGVE 208

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 2   GVKGSAFINSFLTLANLMVMGIVIVVGFYY-----GRLDNWINEGGGFLPYGISGVVAGA 56
           G K +A I      A +++   +++            +   ++    F  +   G +   
Sbjct: 148 GTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVF 207

Query: 57  ATCFYAYVGFD 67
                +Y+G +
Sbjct: 208 VAFILSYMGVE 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.38
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.24
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.87

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.38  E-value=5e-13  Score=93.67  Aligned_cols=77  Identities=23%  Similarity=0.396  Sum_probs=69.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcCHHHHHHHHHHHHHhhccHHHHHhhhhhhcCCC
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYGISGVVAGAATCFYAYVGFDKCWKCLIRIGVRT   80 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g~~g~~~a~~~~~fay~G~~~v~~~aeE~k~~~   80 (83)
                      +|+|.++|+|++++.+|++.++++++.++...+.+++.|   .+.|.|+.+++.+....+|+|.|+|.+++.+||+|||.
T Consensus       142 ~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~  218 (444)
T 3gia_A          142 FGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP---DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK  218 (444)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSC---CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCC---CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc
Confidence            489999999999999999999999999998887777765   25567788899999999999999999999999999985

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.24  E-value=1.2e-11  Score=86.54  Aligned_cols=77  Identities=12%  Similarity=0.241  Sum_probs=61.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCccCcC---HHHHHHHHHHHHHhhccHHHHHhhhhhhc
Q psy4781           1 MGVKGSAFINSFLTLANLMVMGIVIVVGFYYGRLDNWINEGGGFLPYG---ISGVVAGAATCFYAYVGFDKCWKCLIRIG   77 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~p~g---~~g~~~a~~~~~fay~G~~~v~~~aeE~k   77 (83)
                      +|+|..+|+|++++.+|++.++++++.++.+.+.+++.+   .+.|.+   +.+++.+....+|+|.|||.+++++||+|
T Consensus       142 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k  218 (445)
T 3l1l_A          142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA---AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK  218 (445)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCC---C-----------HHHHHHHHHHTTTTTTHHHHGGGGBS
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhccc---ccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence            489999999999999999999999999988776655532   133333   56789999999999999999999999999


Q ss_pred             CCC
Q psy4781          78 VRT   80 (83)
Q Consensus        78 ~~~   80 (83)
                      ||.
T Consensus       219 ~p~  221 (445)
T 3l1l_A          219 NPK  221 (445)
T ss_dssp             SHH
T ss_pred             Ccc
Confidence            985

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.87  E-value=7.1e-10  Score=78.80  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             CchhHHHHHHHHHHHHHHH-HHHHHHHhhhhhccccc---cccCCCCccCcC-HHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy4781           1 MGVKGSAFINSFLTLANLM-VMGIVIVVGFYYGRLDN---WINEGGGFLPYG-ISGVVAGAATCFYAYVGFDKCWKCLIR   75 (83)
Q Consensus         1 ~Gv~~~~~~q~~lt~~kl~-~l~~~ii~g~~~~~~~~---~~~~~~~~~p~g-~~g~~~a~~~~~fay~G~~~v~~~aeE   75 (83)
                      +|+|.++|+|++++.++++ .++++++.|+.....++   .....+++.|.. ..+.+.+....+|+|.|||.+++++||
T Consensus       147 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E  226 (511)
T 4djk_A          147 GGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNE  226 (511)
T ss_dssp             TCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSS
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            5899999999999988655 46667777765432211   111112233431 123456677889999999999999999


Q ss_pred             hcCCC
Q psy4781          76 IGVRT   80 (83)
Q Consensus        76 ~k~~~   80 (83)
                      +|||.
T Consensus       227 ~k~P~  231 (511)
T 4djk_A          227 MSNPG  231 (511)
T ss_dssp             SSCCT
T ss_pred             ccCcc
Confidence            99997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00