Psyllid ID: psy4797

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
MCGNPVMFTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER
cccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHccccccccccccccccccccccEEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccccccccHHHHHHHHHHcccccccccccccccccHcccccccHHHHccccccHcccHcHcHHHHHHHHcccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
mcgnpvmftpwahhtsygtdtnlsgavvntldfgsggwwfepninlflpqntLKDLTNnlqqsklsdspikdkstlkqvsapvqenvetepllrdnprrfvifPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTgeekashsrnepylfriklapggicrykvkkggkitggktietmpcvkKKADWALRWIADEASSFGERVIAFASVegiffsgsfASIFWLkkrglmpgltfsnelisrdedlshwnkltrdEKYFISHVLAFFAasdgivneNLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER
MCGNPVMFTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQqsklsdspikdkstlkqvsapvqenvetepllrdnprrfVIFPIQYQDIWKMYKKAEASFWtaeevdlskvvVTNFEIRalktgeekashsrnepylfriklapggicrykvkkggkitggktietmpcvkKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER
MCGNPVMFTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVkkggkitggktiETMPCVKKKADWALRWIADEASSFGERVIAFASVEgiffsgsfasifWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER
*****VMFTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLK*****************************************NPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKT**********EPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYI******
*******************************************************************************************LLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQ***
MCGNPVMFTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKT********RNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER
**************************************************************************************V*TEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQE**
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MCGNPVMFTPWAHHTSYGTDTNLSGAVVNTLDFGSGGWWFEPNINLFLPQNTLKDLTNNLQQSKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIKDQEER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
Q4KLN6390 Ribonucleoside-diphosphat yes N/A 0.576 0.492 0.511 6e-53
P11157390 Ribonucleoside-diphosphat yes N/A 0.576 0.492 0.515 9e-53
Q60561386 Ribonucleoside-diphosphat N/A N/A 0.573 0.494 0.5 5e-52
P07201384 Ribonucleoside-diphosphat N/A N/A 0.597 0.518 0.491 6e-51
P31350389 Ribonucleoside-diphosphat yes N/A 0.525 0.449 0.537 6e-51
Q4R7Q7389 Ribonucleoside-diphosphat N/A N/A 0.507 0.434 0.546 2e-50
P79733386 Ribonucleoside-diphosphat yes N/A 0.507 0.437 0.546 4e-50
P48592393 Ribonucleoside-diphosphat yes N/A 0.618 0.524 0.458 6e-48
Q6PEE3351 Ribonucleoside-diphosphat no N/A 0.531 0.504 0.527 2e-47
Q4R741351 Ribonucleoside-diphosphat N/A N/A 0.501 0.475 0.557 6e-47
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1 Back     alignment and function desciption
 Score =  208 bits (529), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 116/227 (51%), Positives = 143/227 (62%), Gaps = 35/227 (15%)

Query: 63  SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
           SK +    +D + L+   AP + ++E EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45  SKAARRIFQDSAELES-KAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103

Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
           TAEEVDLSK +                          + N  +    + E + + +R   
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-F 162

Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
           Y F+I +       Y +     I   K        IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222

Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
           GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity). Inhibits Wnt signaling.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1
>sp|P11157|RIR2_MOUSE Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1 Back     alignment and function description
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1 Back     alignment and function description
>sp|P07201|RIR2_SPISO Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2 Back     alignment and function description
>sp|P31350|RIR2_HUMAN Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1 Back     alignment and function description
>sp|Q4R7Q7|RIR2_MACFA Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca fascicularis GN=RRM2 PE=2 SV=1 Back     alignment and function description
>sp|P79733|RIR2_DANRE Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1 Back     alignment and function description
>sp|P48592|RIR2_DROME Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2 Back     alignment and function description
>sp|Q6PEE3|RIR2B_MOUSE Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1 Back     alignment and function description
>sp|Q4R741|RIR2B_MACFA Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca fascicularis GN=RRM2B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
71043760390 ribonucleoside-diphosphate reductase sub 0.576 0.492 0.511 4e-51
392334327390 PREDICTED: ribonucleoside-diphosphate re 0.576 0.492 0.511 4e-51
148705043411 ribonucleotide reductase M2 [Mus musculu 0.576 0.467 0.515 6e-51
7106399390 ribonucleoside-diphosphate reductase sub 0.576 0.492 0.515 6e-51
74207686390 unnamed protein product [Mus musculus] 0.576 0.492 0.515 8e-51
440894701383 Ribonucleoside-diphosphate reductase sub 0.525 0.456 0.547 9e-51
346644876389 ribonucleoside-diphosphate reductase sub 0.525 0.449 0.547 1e-50
444731691357 Ribonucleoside-diphosphate reductase sub 0.549 0.512 0.531 1e-50
2500209386 RecName: Full=Ribonucleoside-diphosphate 0.573 0.494 0.5 3e-50
354494802390 PREDICTED: ribonucleoside-diphosphate re 0.549 0.469 0.518 4e-50
>gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus] gi|77416595|sp|Q4KLN6.1|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus] gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus] Back     alignment and taxonomy information
 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/227 (51%), Positives = 143/227 (62%), Gaps = 35/227 (15%)

Query: 63  SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFW 122
           SK +    +D + L+   AP + ++E EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFW
Sbjct: 45  SKAARRIFQDSAELES-KAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103

Query: 123 TAEEVDLSKVV--------------------------VTNFEIRALKTGEEKASHSRNEP 156
           TAEEVDLSK +                          + N  +    + E + + +R   
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-F 162

Query: 157 YLFRIKLAPGGICRYKVKKGGKITGGK-------TIETMPCVKKKADWALRWIADEASSF 209
           Y F+I +       Y +     I   K        IETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222

Query: 210 GERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
           GERV+AFA+VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|392334327|ref|XP_003753140.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Rattus norvegicus] gi|392354916|ref|XP_003751887.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Rattus norvegicus] Back     alignment and taxonomy information
>gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus] Back     alignment and taxonomy information
>gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus] gi|132626|sp|P11157.1|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Oxidizing Conditions. A Fully Occupied Dinuclear Iron Cluster. gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Reducing Conditions. A Fully Occupied Dinuclear Iron Cluster And Bound Acetate. gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus] gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus] gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus] gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus] gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus] gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus] gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus] gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus] gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus] gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus] gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|440894701|gb|ELR47090.1| Ribonucleoside-diphosphate reductase subunit M2 [Bos grunniens mutus] Back     alignment and taxonomy information
>gi|346644876|ref|NP_001231110.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Bos taurus] gi|296482361|tpg|DAA24476.1| TPA: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] Back     alignment and taxonomy information
>gi|444731691|gb|ELW72040.1| Ribonucleoside-diphosphate reductase subunit M2 [Tupaia chinensis] Back     alignment and taxonomy information
>gi|2500209|sp|Q60561.1|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus] Back     alignment and taxonomy information
>gi|354494802|ref|XP_003509524.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Cricetulus griseus] gi|344243911|gb|EGW00015.1| Ribonucleoside-diphosphate reductase subunit M2 [Cricetulus griseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
UNIPROTKB|E1BXP4 388 RRM2 "Uncharacterized protein" 0.258 0.221 0.802 1.3e-55
UNIPROTKB|I3LUY0 329 RRM2 "Uncharacterized protein" 0.258 0.261 0.790 3.3e-55
ZFIN|ZDB-GENE-990415-25 386 rrm2 "ribonucleotide reductase 0.258 0.222 0.802 5.4e-55
UNIPROTKB|C9JXC1 289 RRM2 "Ribonucleoside-diphospha 0.258 0.297 0.790 8.8e-55
UNIPROTKB|P31350 389 RRM2 "Ribonucleoside-diphospha 0.258 0.221 0.790 8.8e-55
UNIPROTKB|Q4R7Q7 389 RRM2 "Ribonucleoside-diphospha 0.258 0.221 0.790 8.8e-55
UNIPROTKB|E2R7H9 381 RRM2 "Uncharacterized protein" 0.258 0.225 0.790 1.1e-54
FB|FBgn0011704 393 RnrS "Ribonucleoside diphospha 0.258 0.218 0.767 4.2e-53
UNIPROTKB|H0YAV1 408 RRM2B "Ribonucleoside-diphosph 0.258 0.210 0.779 5.4e-53
UNIPROTKB|F1P0T9 326 RRM2B "Uncharacterized protein 0.258 0.263 0.813 6.9e-53
UNIPROTKB|E1BXP4 RRM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 369 (135.0 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 69/86 (80%), Positives = 76/86 (88%)

Query:   248 ELISRDEDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGF 307
             E +   +DL HW  L  +EKYFISHVLAFFAASDGIVNENLVERF+QEVQ+TEARCFYGF
Sbjct:   104 EEVDLSKDLQHWESLKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGF 163

Query:   308 QIAMENVHSEMYSLLIDTYIKDQEER 333
             QIAMEN+HSEMYSLLIDTYIKD +ER
Sbjct:   164 QIAMENIHSEMYSLLIDTYIKDSKER 189
GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA
GO:0009186 "deoxyribonucleoside diphosphate metabolic process" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA
GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA
GO:0051290 "protein heterotetramerization" evidence=IEA
UNIPROTKB|I3LUY0 RRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-25 rrm2 "ribonucleotide reductase M2 polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C9JXC1 RRM2 "Ribonucleoside-diphosphate reductase subunit M2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P31350 RRM2 "Ribonucleoside-diphosphate reductase subunit M2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R7Q7 RRM2 "Ribonucleoside-diphosphate reductase subunit M2" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7H9 RRM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0011704 RnrS "Ribonucleoside diphosphate reductase small subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H0YAV1 RRM2B "Ribonucleoside-diphosphate reductase subunit M2 B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0T9 RRM2B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P79733RIR2_DANRE1, ., 1, 7, ., 4, ., 10.54670.50750.4378yesN/A
Q4KLN6RIR2_RAT1, ., 1, 7, ., 4, ., 10.51100.57650.4923yesN/A
P11157RIR2_MOUSE1, ., 1, 7, ., 4, ., 10.51540.57650.4923yesN/A
P31350RIR2_HUMAN1, ., 1, 7, ., 4, ., 10.53770.52550.4498yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.4.10.824
3rd Layer1.17.40.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
PLN02492 324 PLN02492, PLN02492, ribonucleoside-diphosphate red 3e-48
PTZ00211 330 PTZ00211, PTZ00211, ribonucleoside-diphosphate red 2e-45
PLN02492324 PLN02492, PLN02492, ribonucleoside-diphosphate red 1e-43
PTZ00211330 PTZ00211, PTZ00211, ribonucleoside-diphosphate red 3e-40
pfam00268 281 pfam00268, Ribonuc_red_sm, Ribonucleotide reductas 1e-35
pfam00268281 pfam00268, Ribonuc_red_sm, Ribonucleotide reductas 2e-35
cd01049 288 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta 3e-34
cd01049288 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta 3e-27
COG0208 348 COG0208, NrdF, Ribonucleotide reductase, beta subu 5e-23
PLN02492324 PLN02492, PLN02492, ribonucleoside-diphosphate red 3e-21
PTZ00211330 PTZ00211, PTZ00211, ribonucleoside-diphosphate red 4e-21
COG0208348 COG0208, NrdF, Ribonucleotide reductase, beta subu 2e-19
pfam00268281 pfam00268, Ribonuc_red_sm, Ribonucleotide reductas 2e-12
cd01049288 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta 2e-11
PRK09614 324 PRK09614, nrdF, ribonucleotide-diphosphate reducta 6e-09
PRK12759 410 PRK12759, PRK12759, bifunctional gluaredoxin/ribon 6e-06
PRK07209369 PRK07209, PRK07209, ribonucleotide-diphosphate red 8e-04
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase Back     alignment and domain information 
 Score =  164 bits (417), Expect = 3e-48
 Identities = 59/80 (73%), Positives = 68/80 (85%)

Query: 254 EDLSHWNKLTRDEKYFISHVLAFFAASDGIVNENLVERFTQEVQITEARCFYGFQIAMEN 313
            DL  W KLT DE++FISHVLAFFAASDGIV ENL  RF +EVQ+ EAR FYGFQIA+EN
Sbjct: 42  ADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIEN 101

Query: 314 VHSEMYSLLIDTYIKDQEER 333
           +HSEMYSLL+DTYIKD +E+
Sbjct: 102 IHSEMYSLLLDTYIKDPKEK 121

Length = 324
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase Back     alignment and domain information
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain Back     alignment and domain information
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain Back     alignment and domain information
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|223286 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase Back     alignment and domain information
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>gnl|CDD|223286 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain Back     alignment and domain information
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|236591 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|235968 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
KOG1567|consensus344 100.0
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 100.0
PLN02492324 ribonucleoside-diphosphate reductase 100.0
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 100.0
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 100.0
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 100.0
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 100.0
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 100.0
PRK13966324 nrdF2 ribonucleotide-diphosphate reductase subunit 99.98
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 99.98
PRK13965335 ribonucleotide-diphosphate reductase subunit beta; 99.98
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 99.98
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 99.97
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 99.9
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 99.87
KOG1567|consensus 344 99.75
COG0208 348 NrdF Ribonucleotide reductase, beta subunit [Nucle 99.72
PRK09101 376 nrdB ribonucleotide-diphosphate reductase subunit 99.67
PLN02492 324 ribonucleoside-diphosphate reductase 99.66
PTZ00211 330 ribonucleoside-diphosphate reductase small subunit 99.66
PRK13966 324 nrdF2 ribonucleotide-diphosphate reductase subunit 99.64
PRK09614 324 nrdF ribonucleotide-diphosphate reductase subunit 99.63
PRK07209 369 ribonucleotide-diphosphate reductase subunit beta; 99.63
PRK12759 410 bifunctional gluaredoxin/ribonucleoside-diphosphat 99.62
PRK13967 322 nrdF1 ribonucleotide-diphosphate reductase subunit 99.59
PF00268 281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 99.59
cd01049 288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 99.56
PRK13965 335 ribonucleotide-diphosphate reductase subunit beta; 99.49
cd07911 280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 99.48
PRK08326 311 ribonucleotide-diphosphate reductase subunit beta; 99.33
PF11583 304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 80.81
>KOG1567|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-44  Score=335.06  Aligned_cols=173  Identities=62%  Similarity=0.983  Sum_probs=159.4

Q ss_pred             cccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHh-----------
Q psy4797          83 VQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASH-----------  151 (333)
Q Consensus        83 ~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~-----------  151 (333)
                      .++..++||||.++++|++++||+|+.+|++|||++++||++||||+++|. .||.  +|+++||....           
T Consensus        18 ~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~-~dw~--~L~~~er~fIs~vlaffaasdG   94 (344)
T KOG1567|consen   18 MKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDL-DDWE--KLNDDERHFISHVLAFFAASDG   94 (344)
T ss_pred             ccccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccch-hhHH--HcChhhhhhHHHHHHHHhcccc
Confidence            678889999999999999999999999999999999999999999999999 9999  99999998632           


Q ss_pred             hcChHHHHHh---hhccchhhcccccc---------------------CChhhhhhhhhhcHHHHHHHHHHHHHhhhccc
Q psy4797         152 SRNEPYLFRI---KLAPGGICRYKVKK---------------------GGKITGGKTIETMPCVKKKADWALRWIADEAS  207 (333)
Q Consensus       152 ~v~~~~~~~~---~~~~e~~~~Ys~~~---------------------~~~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~  207 (333)
                      .|+++++..+   .+.+|+++|||||+                     .+++-+|+++++.|+|++||+|+.+|+.+.++
T Consensus        95 ivnenl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~s  174 (344)
T KOG1567|consen   95 IVNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISDKDS  174 (344)
T ss_pred             chhHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCCc
Confidence            2567777644   46899999999982                     13567899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhh
Q psy4797         208 SFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSH  258 (333)
Q Consensus       208 ~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~  258 (333)
                      +|++|+|||+|+|||||+||||++|||++||+|||++..++.|+||+++|+
T Consensus       175 ~faeRlvAFAavEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~  225 (344)
T KOG1567|consen  175 LFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHC  225 (344)
T ss_pred             cHHHHHHHHHHHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcc
Confidence            999999999999999999999999999999999999999999999999995

>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>KOG1567|consensus Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1h0n_A390 Cobalt Substitution Of Mouse R2 Ribonucleotide Redu 1e-37
1h0n_A 390 Cobalt Substitution Of Mouse R2 Ribonucleotide Redu 2e-35
2uw2_A 332 Crystal Structure Of Human Ribonucleotide Reductase 2e-35
3olj_A 286 Crystal Structure Of Human Ribonucleotide Reductase 2e-35
3hf1_A 351 Crystal Structure Of Human P53r2 Length = 351 3e-35
2vux_A 326 Human Ribonucleotide Reductase, Subunit M2 B Length 3e-35
4djn_A 311 Crystal Structure Of A Ribonucleotide Reductase M2 3e-34
1smq_A 399 Structure Of The Ribonucleotide Reductase Rnr2 Homo 1e-26
1jk0_A 419 Ribonucleotide Reductase Y2y4 Heterodimer Length = 1e-26
2o1z_A 311 Plasmodium Vivax Ribonucleotide Reductase Subunit R 2e-25
2p1i_A 349 Plasmodium Yoelii Ribonucleotide Reductase Subunit 4e-25
1jk0_B345 Ribonucleotide Reductase Y2y4 Heterodimer Length = 2e-17
1jk0_B 345 Ribonucleotide Reductase Y2y4 Heterodimer Length = 2e-15
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/227 (43%), Positives = 125/227 (55%), Gaps = 35/227 (15%)
Query: 63  SKLSDSPIKDKSTLKQVSAPVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASF- 121
           SK +    +D + L+   AP   +VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASF 
Sbjct: 45  SKAARRIFQDSAELES-KAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFW 103
Query: 122 -------------WTAEEVD----LSKVV--------VTNFEIRALKTGEEKASHSRNEP 156
                        W A + D    +S V+        + N  +    + E + + +R   
Sbjct: 104 TAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARC-F 162
Query: 157 YLFRI-------KLAPGGICRYKVXXXXXXXXXXXXETMPCVKKKADWALRWIADEASSF 209
           Y F+I       ++    I  Y              ETMPCVKKKADWALRWI D+ +++
Sbjct: 163 YGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATY 222
Query: 210 GERVIAFASVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEDL 256
           GERV+AFA+VE            WLKKRGLMPGLTFSNELISRDE L
Sbjct: 223 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 269
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State Length = 390 Back     alignment and structure
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Back     alignment and structure
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit M2 (Hrrm2) Length = 286 Back     alignment and structure
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 Length = 351 Back     alignment and structure
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Back     alignment and structure
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B (Rnrr2) From Homo Sapiens At 2.20 A Resolution Length = 311 Back     alignment and structure
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae Length = 399 Back     alignment and structure
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Back     alignment and structure
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Back     alignment and structure
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) Length = 349 Back     alignment and structure
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer Length = 345 Back     alignment and structure
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 1e-47
3olj_A 286 Ribonucleoside-diphosphate reductase subunit M2; m 4e-41
2o1z_A 311 Ribonucleotide reductase subunit R2; small subunit 2e-45
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 7e-24
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 1e-20
1h0o_A 390 Ribonucleoside-diphosphate reductase; oxidoreducta 2e-45
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 5e-26
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 3e-22
2p1i_A 349 Ribonucleotide reductase, small chain; F222 twinni 1e-44
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 4e-24
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 5e-20
1jk0_B 345 RNR Y4, ribonucleoside-diphosphate reductase small 5e-43
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 4e-24
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 2e-20
4a58_A 324 Ribonucleoside-diphosphate reductase small chain; 4e-41
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 1e-35
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 8e-15
1jk0_A 419 RNR Y2, ribonucleoside-diphosphate reductase small 2e-40
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 4e-23
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 2e-21
1syy_A 346 Ribonucleoside-diphosphate reductase beta chain; D 1e-39
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 3e-29
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 1e-13
4dr0_A 350 Ribonucleoside-diphosphate reductase subunit beta; 8e-34
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 4e-22
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 4e-08
3ee4_A 323 Probable ribonucleoside-diphosphate reductase; man 2e-32
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 5e-28
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 9e-11
1mxr_A 375 Ribonucleotide reductase R2; radical protein, DI i 2e-27
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 3e-11
1mxr_A 375 Ribonucleotide reductase R2; radical protein, DI i 2e-10
3n37_A 319 Ribonucleoside-diphosphate reductase 2 subunit BE; 2e-27
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 5e-19
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 5e-06
3dhz_A 329 Ribonucleotide reductase subunit R2F; metal free, 1e-26
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 1e-19
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 1e-05
3mjo_A 296 Ribonucleotide reductase subunit R2F; Mn ribonucle 2e-26
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 2e-19
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 2e-05
2rcc_A 346 Ribonucleoside-diphosphate reductase subunit beta; 1e-21
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 3e-17
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} Length = 286 Back     alignment and structure
 Score =  160 bits (407), Expect = 1e-47
 Identities = 108/212 (50%), Positives = 120/212 (56%), Gaps = 50/212 (23%)

Query: 86  NVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEV-------DLSKV------ 132
            VE EPLLR+NPRRFVIFPI+Y DIW+MYKKAEASFWTAEEV           +      
Sbjct: 2   GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 61

Query: 133 --------------------------VVTNFEIRA--LKTGEEKASHSRNEPYLFRIKLA 164
                                      V   E R         +  HS  E Y   I   
Sbjct: 62  FISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHS--EMYSLLIDT- 118

Query: 165 PGGICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFF 224
                 Y      +      IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFF
Sbjct: 119 ------YIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFF 172

Query: 225 SGSFASIFWLKKRGLMPGLTFSNELISRDEDL 256
           SGSFASIFWLKKRGLMPGLTFSNELISRDE L
Sbjct: 173 SGSFASIFWLKKRGLMPGLTFSNELISRDEGL 204
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} Length = 286 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Length = 349 Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Length = 349 Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Length = 349 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Length = 346 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Length = 346 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Length = 346 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Length = 350 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Length = 350 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Length = 350 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Length = 375 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Length = 375 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Length = 375 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Length = 329 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Length = 329 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Length = 329 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 100.0
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 100.0
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 100.0
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 100.0
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 100.0
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 100.0
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 100.0
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 100.0
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 100.0
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 100.0
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 100.0
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 100.0
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 100.0
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 100.0
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 99.96
3olj_A 286 Ribonucleoside-diphosphate reductase subunit M2; m 99.73
1jk0_B 345 RNR Y4, ribonucleoside-diphosphate reductase small 99.68
4a58_A 324 Ribonucleoside-diphosphate reductase small chain; 99.67
3mjo_A 296 Ribonucleotide reductase subunit R2F; Mn ribonucle 99.67
2o1z_A 311 Ribonucleotide reductase subunit R2; small subunit 99.67
1h0o_A 390 Ribonucleoside-diphosphate reductase; oxidoreducta 99.66
1mxr_A 375 Ribonucleotide reductase R2; radical protein, DI i 99.66
3n37_A 319 Ribonucleoside-diphosphate reductase 2 subunit BE; 99.66
2p1i_A 349 Ribonucleotide reductase, small chain; F222 twinni 99.65
3dhz_A 329 Ribonucleotide reductase subunit R2F; metal free, 99.64
1syy_A 346 Ribonucleoside-diphosphate reductase beta chain; D 99.64
4dr0_A 350 Ribonucleoside-diphosphate reductase subunit beta; 99.64
1jk0_A 419 RNR Y2, ribonucleoside-diphosphate reductase small 99.62
3ee4_A 323 Probable ribonucleoside-diphosphate reductase; man 99.61
2rcc_A 346 Ribonucleoside-diphosphate reductase subunit beta; 99.6
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
Probab=100.00  E-value=2.4e-42  Score=328.00  Aligned_cols=170  Identities=65%  Similarity=1.031  Sum_probs=148.4

Q ss_pred             ccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHHHHHhh-----------cCh
Q psy4797          87 VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEEKASHS-----------RNE  155 (333)
Q Consensus        87 ~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er~~~~~-----------v~~  155 (333)
                      +++||||.+|++||+++||+|||+|++|+|++++||+|||||+++|+ .||+  +||+.||+++..           |+.
T Consensus         3 ~~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~-~dw~--~L~~~Er~~~~~~l~~~~~~D~iv~~   79 (286)
T 3olj_A            3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI-QHWE--SLKPEERYFISHVLAFFAASDGIVNE   79 (286)
T ss_dssp             STTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSH-HHHH--HSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhH-HHHH--hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999 9999  899999997642           221


Q ss_pred             ---------------HHHHHhh--hccchhhccccccC----C---hhhhhhhhhhcHHHHHHHHHHHHHhhhccchHHH
Q psy4797         156 ---------------PYLFRIK--LAPGGICRYKVKKG----G---KITGGKTIETMPCVKKKADWALRWIADEASSFGE  211 (333)
Q Consensus       156 ---------------~~~~~~~--~~~e~~~~Ys~~~~----~---~~~~f~~~~~~p~i~~Ka~~i~~~~~~~~~~~~~  211 (333)
                                     +.+++.|  +|..|..+||++.+    +   ++++|++++++|+|++|++|+.+|++++++++++
T Consensus        80 ~l~~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~  159 (286)
T 3olj_A           80 NLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGE  159 (286)
T ss_dssp             HHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCSSSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCChhHHHH
Confidence                           1222333  34455558887632    2   3469999999999999999999999887778999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797         212 RVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW  259 (333)
Q Consensus       212 ~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~  259 (333)
                      ++|||+++|||+|||||++++||++||+|||+++++++|.|||.+|+.
T Consensus       160 ~lva~~~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~  207 (286)
T 3olj_A          160 RVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD  207 (286)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999975
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 333
d1w68a_281 a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse ( 2e-31
d1w68a_ 281 a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse ( 2e-14
d1jk0a_334 a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's 3e-28
d1jk0a_ 334 a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's 3e-15
d1jk0b_285 a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's 7e-22
d1jk0b_ 285 a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's 2e-12
d1mxra_ 339 a.25.1.2 (A:) Ribonucleotide reductase R2 {Escheri 1e-17
d1mxra_339 a.25.1.2 (A:) Ribonucleotide reductase R2 {Escheri 5e-09
d1r2fa_ 283 a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmone 6e-16
d1r2fa_283 a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmone 2e-09
d3dhza1 284 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {C 4e-15
d3dhza1284 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {C 1e-11
d1syya_ 317 a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamyd 1e-13
d1syya_317 a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamyd 2e-10
d1syya_317 a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamyd 1e-07
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (293), Expect = 2e-31
 Identities = 108/212 (50%), Positives = 122/212 (57%), Gaps = 46/212 (21%)

Query: 87  VETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSK--------------- 131
           VE EPLLR+NPRRFV+FPI+Y DIW+MYKKAEASFWTAEEVDLSK               
Sbjct: 1   VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHF 60

Query: 132 ------------------------VVVTNFEIRALKTGEEKASHSRNEPYLFRIKLAPGG 167
                                     V   E R     +    +  +E Y   I      
Sbjct: 61  ISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 120

Query: 168 ICRYKVKKGGKITGGKTIETMPCVKKKADWALRWIADEASSFGERVIAFASVEGIFFSGS 227
               +            IETMPCVKKKADWALRWI D+ +++GERV+AFA+VEGIFFSGS
Sbjct: 121 PKEREYLF-------NAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGS 173

Query: 228 FASIFWLKKRGLMPGLTFSNELISRDEDLSHW 259
           FASIFWLKKRGLMPGLTFSNELISRDE L   
Sbjct: 174 FASIFWLKKRGLMPGLTFSNELISRDEGLHCD 205
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 100.0
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 100.0
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 99.97
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 99.96
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 99.96
d1jk0b_ 285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 99.62
d1jk0a_ 334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 99.61
d1w68a_ 281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 99.61
d1mxra_ 339 Ribonucleotide reductase R2 {Escherichia coli [Tax 99.59
d1r2fa_ 283 Ribonucleotide reductase R2 {Salmonella typhimuriu 99.58
d3dhza1 284 Ribonucleotide reductase R2 {Corynebacterium ammon 99.56
d1syya_ 317 Ribonucleotide reductase R2 {Chlamydia trachomatis 99.56
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]

Probab=100.00  E-value=3.7e-41  Score=323.81  Aligned_cols=187  Identities=47%  Similarity=0.786  Sum_probs=157.3

Q ss_pred             cccccccccc---cccccCccCCCCccCCCCcccccCcCchHHHHHHHHHHhCCcccccccCccchhccccccCCChhHH
Q psy4797          71 KDKSTLKQVS---APVQENVETEPLLRDNPRRFVIFPIQYQDIWKMYKKAEASFWTAEEVDLSKVVVTNFEIRALKTGEE  147 (333)
Q Consensus        71 ~~~~~~~~~~---~~~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lYkk~~anfW~pEEIdls~D~~~dw~~~~Lt~~Er  147 (333)
                      +++.++..+.   ..+++.+++||||.+|++||++|||||||+|++|||++++||+|+||||++|+ .||+. .||+.||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~r~~~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~-~dw~~-~Lt~~Er  106 (334)
T d1jk0a_          29 NHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDI-HDWNN-RMNENER  106 (334)
T ss_dssp             HHHHHHHHCHHHHHHHHHHGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHH-HHHHH-TCCHHHH
T ss_pred             HHHHHHHhhhhhHHHhHhhhcCCcccCCCCCceeEeCCcCHHHHHHHHHHHHcCCCchhccCcCCH-HHHhh-cCCHHHH
Confidence            3334444433   33778899999999999999999999999999999999999999999999999 99963 6999999


Q ss_pred             HHHhh-----------cC---------------hHHHHHhhh--ccchhhccccccC-------ChhhhhhhhhhcHHHH
Q psy4797         148 KASHS-----------RN---------------EPYLFRIKL--APGGICRYKVKKG-------GKITGGKTIETMPCVK  192 (333)
Q Consensus       148 ~~~~~-----------v~---------------~~~~~~~~~--~~e~~~~Ys~~~~-------~~~~~f~~~~~~p~i~  192 (333)
                      +++..           |+               ...+.++|.  |..|..+||+.++       +...+|+++.+.|+++
T Consensus       107 ~~i~~il~ffa~~D~~v~~~l~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~ii~tl~~d~~e~~~lf~~~~~~~~i~  186 (334)
T d1jk0a_         107 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIG  186 (334)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHhHHHHhhhHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHCHHHH
Confidence            97642           11               123334443  3444557887632       2345899999999999


Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCcccchhhhhcchhhhhh
Q psy4797         193 KKADWALRWIADEASSFGERVIAFASVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEDLSHW  259 (333)
Q Consensus       193 ~Ka~~i~~~~~~~~~~~~~~lVa~~~lEGI~FysgFa~~~~L~~~g~M~g~~~~ie~I~rDEdlh~~  259 (333)
                      +|++|+.+|+.+....+.++++|++++|||+|||||++++||+++|+|||+++++++|.|||.+|+.
T Consensus       187 ~k~~~~~~~~~~~~~~~~~~lva~~~lEgi~F~ssFa~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~  253 (334)
T d1jk0a_         187 EKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTD  253 (334)
T ss_dssp             HHHHHHHHHTTSSSCCHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Confidence            9999999999988888999999999999999999999999999999999999999999999999964
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure