Psyllid ID: psy4800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPST
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccccHHHHHHHHccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHcccEEEEEEEccccccccccEEHHHcccccccccEEEEcHHHHHcccccccccccccccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
myekyhgsALLIDevqtgggpcgkfwchehfdleespdivtfskkmqlggyflkpefvpqqaYRVFntwmgdpgkVLLLKGIIDTIHNENLLDRVQKTGDILLNVRlglgqesnlqpst
Flexible Loop (DISEMBL)
MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVrlglgqesnlqpst
Low Complexity Region (SEG)
MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPST
Disordered region (IsUnstruct)
******GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL**********
Disordered Region (DISOPRED)
MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQ********
Disordered Region (DISEMBL)
MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQ********
Disordered Region (DISPRO)
MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
P61922	500	4-aminobutyrate aminotran	yes	N/A	0.890	0.212	0.547	1e-28
P80147	500	4-aminobutyrate aminotran	yes	N/A	0.890	0.212	0.537	3e-28
P50554	500	4-aminobutyrate aminotran	yes	N/A	0.890	0.212	0.537	7e-28
P80404	500	4-aminobutyrate aminotran	yes	N/A	0.890	0.212	0.537	8e-28
Q55FI1	495	4-aminobutyrate aminotran	yes	N/A	0.831	0.2	0.525	3e-25
P14010	498	4-aminobutyrate aminotran	yes	N/A	0.781	0.186	0.510	5e-24
Q9BGI0	500	4-aminobutyrate aminotran	yes	N/A	0.848	0.202	0.514	1e-23
Q21217	483	Probable 4-aminobutyrate	yes	N/A	0.907	0.223	0.449	5e-23
P49604	509	4-aminobutyrate aminotran	N/A	N/A	0.831	0.194	0.464	7e-23
P17649	471	4-aminobutyrate aminotran	yes	N/A	0.857	0.216	0.436	5e-21

>sp|P61922|GABT_MOUSE 4-aminobutyrate aminotransferase, mitochondrial OS=Mus musculus GN=Abat PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 73/106 (68%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           + HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   Y
Sbjct: 317 RKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPSAPY 376

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
           R+FNTW+GDP K LLL  +I+ I  E+LL+ V + G  LL   L L
Sbjct: 377 RIFNTWLGDPSKNLLLAEVINIIKREDLLNNVARVGKTLLTGLLDL 422

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp|P80147|GABT_PIG 4-aminobutyrate aminotransferase, mitochondrial OS=Sus scrofa GN=ABAT PE=1 SV=2

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 71/106 (66%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           + HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   Y
Sbjct: 317 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPY 376

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
           R+FNTW+GDP K LLL  +I+ I  E+LL      G +LL   L L
Sbjct: 377 RIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 422

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P50554|GABT_RAT 4-aminobutyrate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Abat PE=1 SV=3

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 72/106 (67%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           + HG A L+DEVQTGGG  GKFW HEH+ L++  D+++FSKKM  GG+F K EF P   Y
Sbjct: 317 RKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMSFSKKMMTGGFFHKEEFRPSAPY 376

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
           R+FNTW+GDP K LLL  +I+ I  E+LL+ V   G  LL   L L
Sbjct: 377 RIFNTWLGDPSKNLLLAEVINIIKREDLLNNVAHAGKTLLTGLLDL 422

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P80404|GABT_HUMAN 4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens GN=ABAT PE=1 SV=3

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 71/106 (66%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           + HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   Y
Sbjct: 317 RKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPY 376

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
           R+FNTW+GDP K LLL  +I+ I  E+LL+     G  LL   L L
Sbjct: 377 RIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDL 422

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q55FI1|GABT_DICDI 4-aminobutyrate aminotransferase OS=Dictyostelium discoideum GN=gabT PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 69/99 (69%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K HG ++++DEVQTG G  GKFW HEH++L   PDIVTFSKKMQ  G++   ++ P ++Y
Sbjct: 310 KKHGVSMIVDEVQTGMGATGKFWAHEHWNLTSPPDIVTFSKKMQAAGFYHNLDYRPSESY 369

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
           R FNTWMGDP + L L+ +I  I   +LLD V  TG+ L
Sbjct: 370 RNFNTWMGDPVRALELEVVIGEIKKNHLLDNVVITGNYL 408

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P14010|GABAT_EMENI 4-aminobutyrate aminotransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=gatA PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 1/94 (1%)

Query: 10  LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-KPEFVPQQAYRVFNT 68
            ++DEVQTG G  GKFW H+H++LE  PD+VTFSKK Q  GY+   P   P + YR FNT
Sbjct: 322 FIVDEVQTGVGATGKFWAHDHWNLETPPDMVTFSKKAQTAGYYFGNPALRPNKPYRQFNT 381

Query: 69  WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
           WMGDP + L+ +GII+ I    L++    TGD L
Sbjct: 382 WMGDPSRALIFRGIIEEIERLFLVENTAATGDYL 415

Deaminates gamma-aminobutyric acid (GABA) to succinate-semialdehyde, which in turn is converted to succinate by the succinate semialdehyde dehydrogenase (By similarity). Required for the degradation of GABA, which is important for utilization of GABA as nitrogen source.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q9BGI0|GABT_BOVIN 4-aminobutyrate aminotransferase, mitochondrial OS=Bos taurus GN=ABAT PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 65/101 (64%)

Query: 9   ALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNT 68
           A L+D VQTGGG  GKFW HEH+  ++  D++T SKKM  GG+F K EF P   YR+FNT
Sbjct: 322 AFLVDVVQTGGGCTGKFWAHEHWARDDPEDVMTSSKKMMTGGFFHKEEFRPNAPYRIFNT 381

Query: 69  WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
           W+GDP K LLL  +I+ I  E+LL+     G  LL   L L
Sbjct: 382 WLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDL 422

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q21217|GABT_CAEEL Probable 4-aminobutyrate aminotransferase, mitochondrial OS=Caenorhabditis elegans GN=gta-1 PE=1 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
           HG   ++DEVQTGGG  G  W H+H++L   PD+VTFSKK+  GGYF       ++AYR+
Sbjct: 303 HGIVFIVDEVQTGGGATGDIWAHDHWNLSSPPDMVTFSKKLLTGGYFYGEHLRVKEAYRI 362

Query: 66  FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN 114
           +NTWMGDP K+LLL+  ++ I  + L+++ ++ G      RLG  Q S+
Sbjct: 363 YNTWMGDPTKLLLLEKAVEVIKRDGLIEQSREVG-AEFQKRLGELQASS 410

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P49604|GABAT_USTMA 4-aminobutyrate aminotransferase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=GATA PE=2 SV=2

 Score =  105 bits (263), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 61/99 (61%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K HG  +++DEVQTG G  G FW H  ++L   PD VTFSKKMQ  G++   E  P   Y
Sbjct: 323 KKHGVFMIVDEVQTGVGATGAFWAHSKWNLTSPPDFVTFSKKMQAAGFYHNIETRPSLPY 382

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
           R +NTWMGDP + L  + II TI + NL+ +  K G+ +
Sbjct: 383 RNYNTWMGDPARTLQARQIIRTIQDHNLIQKTDKVGNYI 421

Deaminates gamma-aminobutyric acid (GABA) to succinate-semialdehyde, which in turn is converted to succinate by the succinate semialdehyde dehydrogenase (By similarity). Not required for the utilization of GABA as nitrogen source.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P17649|GABAT_YEAST 4-aminobutyrate aminotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA1 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 11  LIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-KPEFVPQQAYRVFNTW 69
           +IDEVQTG G  GK WCHE+ D++   D+VTFSKK Q  GYF   P+F+P + YR FNTW
Sbjct: 293 IIDEVQTGVGATGKLWCHEYADIQPPVDLVTFSKKFQSAGYFFHDPKFIPNKPYRQFNTW 352

Query: 70  MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
            G+P ++++   I   I ++ L ++  + GD L     GL ++
Sbjct: 353 CGEPARMIIAGAIGQEISDKKLTEQCSRVGDYLFKKLEGLQKK 395

Required for the degradation of gamma-aminobutyric acid (GABA), which is important for utilization of GABA as nitrogen source and for oxidative stress tolerance. Deaminates GABA to succinate semialdehyde, which in turn is converted to succinate by the succinate-semialdehyde dehydrogenase UGA2. Cannot transaminate beta-alanine (BAL).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
307180216	499	4-aminobutyrate aminotransferase, mitoch	0.915	0.218	0.623	3e-36
328790551	501	PREDICTED: 4-aminobutyrate aminotransfer	0.915	0.217	0.633	1e-35
350420895	498	PREDICTED: 4-aminobutyrate aminotransfer	0.915	0.218	0.623	4e-35
193671580	494	PREDICTED: 4-aminobutyrate aminotransfer	0.848	0.204	0.673	4e-35
380023176	501	PREDICTED: 4-aminobutyrate aminotransfer	0.915	0.217	0.623	6e-35
307191787	525	4-aminobutyrate aminotransferase, mitoch	0.840	0.190	0.68	9e-35
340718052	498	PREDICTED: 4-aminobutyrate aminotransfer	0.915	0.218	0.614	1e-34
170045586	387	4-aminobutyrate aminotransferase, mitoch	0.941	0.289	0.634	1e-34
156545259	490	PREDICTED: 4-aminobutyrate aminotransfer	0.848	0.206	0.653	2e-34
312377903	1533	hypothetical protein AND_10663 [Anophele	0.831	0.064	0.686	2e-34

>gi|307180216|gb|EFN68249.1| 4-aminobutyrate aminotransferase, mitochondrial [Camponotus floridanus]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 87/109 (79%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           + HG+ALLIDEVQTGGGP GK WCHEHF+L+  PD++TFSKKMQLGGY+   +F P+Q+Y
Sbjct: 318 RKHGAALLIDEVQTGGGPTGKMWCHEHFNLDTPPDVMTFSKKMQLGGYYHSKDFKPRQSY 377

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           RVFNTWMGDP KV+LL+ I++ I  ENLLDRV + GD +L   + + +E
Sbjct: 378 RVFNTWMGDPSKVILLEAILEIIKRENLLDRVIRVGDYMLKHLMDIQKE 426

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790551|ref|XP_392483.3| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like isoform 1 [Apis mellifera]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 84/109 (77%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K HG+ALLIDEVQTGGGP GK WCHEHF+LE  PD+VTFSKKMQLGGY+    F P+Q++
Sbjct: 319 KKHGAALLIDEVQTGGGPTGKMWCHEHFNLEFPPDLVTFSKKMQLGGYYHIESFKPKQSF 378

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           RVFNTWMGDP K++LL+ +++TI  ENLL RV   GD +L   + L  E
Sbjct: 379 RVFNTWMGDPSKIILLEAVLETIRKENLLHRVTTVGDYILKKLMNLQNE 427

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420895|ref|XP_003492665.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Bombus impatiens]

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 82/109 (75%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K H +ALLIDEVQTGGGP GK WCHEHF+LE  PD+VTFSKKMQLGGY+      P+Q+Y
Sbjct: 317 KKHDAALLIDEVQTGGGPTGKMWCHEHFNLESPPDVVTFSKKMQLGGYYHVKSLKPKQSY 376

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           R+FNTWMGDP K++LL+ I++TI  ENLL RV   GD +L   + L  E
Sbjct: 377 RIFNTWMGDPSKMILLEAILETIRKENLLHRVTTVGDYMLKQLMSLQNE 425

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193671580|ref|XP_001951622.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 80/101 (79%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K + +  LIDEVQTGGGP GK WCHEHFDLE SPDIVTFSKKMQ GGY+LK EF+P   Y
Sbjct: 311 KKYNAGYLIDEVQTGGGPTGKMWCHEHFDLETSPDIVTFSKKMQTGGYYLKKEFLPDLPY 370

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
           RVFNTWMGDP K++LL  I+  I  ENLL  V+K+GD+L++
Sbjct: 371 RVFNTWMGDPTKIVLLDAILKVIKRENLLSVVEKSGDVLMS 411

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023176|ref|XP_003695402.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Apis florea]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 83/109 (76%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K HG+ALLIDEVQTGGGP GK WCHEHF+LE  PD+VTFSKKMQLGGY+      P+Q++
Sbjct: 319 KKHGAALLIDEVQTGGGPTGKMWCHEHFNLEFPPDLVTFSKKMQLGGYYHIESLKPKQSF 378

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           RVFNTWMGDP K++LL+ +++TI  ENLL RV   GD +L   + L  E
Sbjct: 379 RVFNTWMGDPSKIILLEAVLETIRKENLLHRVTTVGDYILKKLMNLQNE 427

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191787|gb|EFN75225.1| 4-aminobutyrate aminotransferase, mitochondrial [Harpegnathos saltator]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 79/100 (79%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K +G+ALLIDEVQTGGGP GK WCHEHF L+  PD+VTFSKKMQLGGY+    F P+Q Y
Sbjct: 344 KKNGAALLIDEVQTGGGPTGKMWCHEHFCLDAPPDLVTFSKKMQLGGYYHMKAFKPKQPY 403

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
           RVFNTWMGDP KV+LL+ I+D I  ENLLDRV   GD ++
Sbjct: 404 RVFNTWMGDPSKVILLEAILDVIKKENLLDRVTHVGDYVM 443

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718052|ref|XP_003397486.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Bombus terrestris]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 81/109 (74%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K H +ALLIDEVQTGGGP GK WCHEHF+LE  PD+VTFSKKMQLGGY+      P+Q+Y
Sbjct: 317 KKHDAALLIDEVQTGGGPTGKMWCHEHFNLESPPDLVTFSKKMQLGGYYHVKSLKPKQSY 376

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           R+FNTWMGDP K++LL+ +++TI  ENLL RV   GD +L     L  E
Sbjct: 377 RIFNTWMGDPSKMILLEAVLETIRKENLLHRVTTVGDYMLKQLTSLQNE 425

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045586|ref|XP_001850384.1| 4-aminobutyrate aminotransferase, mitochondrial [Culex quinquefasciatus] gi|167868572|gb|EDS31955.1| 4-aminobutyrate aminotransferase, mitochondrial [Culex quinquefasciatus]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 84/115 (73%), Gaps = 3/115 (2%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K HGSALLIDEVQTGGGP GK WCHEHF+L+  PD+VTFSKKMQLGGY+      P Q Y
Sbjct: 204 KRHGSALLIDEVQTGGGPTGKLWCHEHFNLDSPPDVVTFSKKMQLGGYYHAAHMKPAQPY 263

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS 118
           RVFNTWMGDPGK+LLL+ I+  I  E+LL  V+KTG  L   + GL Q  N  P+
Sbjct: 264 RVFNTWMGDPGKLLLLESILKVIKQESLLKNVEKTGAKL---KAGLLQAQNEFPT 315

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545259|ref|XP_001607115.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Nasonia vitripennis]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 80/101 (79%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           + HG ALLIDEVQTGGGP GK WCHEHF+L+  P IVTFSKKMQ+GGY+   E  P+Q+Y
Sbjct: 309 RKHGGALLIDEVQTGGGPTGKMWCHEHFNLDSPPHIVTFSKKMQMGGYYHLEEMKPKQSY 368

Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
           RVFNTWMGDP K++LL+ I+D I  ENLLDRV + G+  L+
Sbjct: 369 RVFNTWMGDPSKLILLEAIVDVIEKENLLDRVTRVGNYTLD 409

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377903|gb|EFR24619.1| hypothetical protein AND_10663 [Anopheles darlingi]

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 78/99 (78%)

Query: 4    KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
            K  GSALLIDEVQTGGGP GK WCHEHF+LE  PD+VTFSKKMQLGGY+      P Q Y
Sbjct: 1328 KRTGSALLIDEVQTGGGPTGKIWCHEHFNLESPPDVVTFSKKMQLGGYYHGAHMKPAQPY 1387

Query: 64   RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
            RVFNTWMGDPGK+LLL+ I+  I  E+LL+ V++TGD L
Sbjct: 1388 RVFNTWMGDPGKLLLLESILQVIKQESLLENVRRTGDKL 1426

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0036927	486	CG7433 [Drosophila melanogaste	0.915	0.224	0.614	2e-33
MGI|MGI:2443582	500	Abat "4-aminobutyrate aminotra	0.873	0.208	0.557	1.9e-27
UNIPROTKB|J9JIL9	477	ABAT "4-aminobutyrate aminotra	0.873	0.218	0.548	2.3e-27
UNIPROTKB|P80147	500	ABAT "4-aminobutyrate aminotra	0.873	0.208	0.548	3.2e-27
UNIPROTKB|P80404	500	ABAT "4-aminobutyrate aminotra	0.873	0.208	0.548	1.2e-26
RGD|620948	500	Abat "4-aminobutyrate aminotra	0.873	0.208	0.548	1.2e-26
UNIPROTKB|H3BNQ7	515	ABAT "4-aminobutyrate aminotra	0.873	0.201	0.548	1.4e-26
UNIPROTKB|H3BRN4	515	ABAT "4-aminobutyrate aminotra	0.873	0.201	0.548	1.4e-26
UNIPROTKB|E1C8M8	500	ABAT "Uncharacterized protein"	0.873	0.208	0.548	1.5e-26
UNIPROTKB|F1MFB7	500	ABAT "4-aminobutyrate aminotra	0.873	0.208	0.538	1.5e-26

FB|FBgn0036927 CG7433 [Drosophila melanogaster (taxid:7227)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 67/109 (61%), Positives = 80/109 (73%)

Query:     4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
             K +G ALLIDEVQTGGG  GKFW HEHF+LE  PD+VTFSKK+QLGGYF   +F+P + Y
Sbjct:   304 KKNGIALLIDEVQTGGGSTGKFWAHEHFELESPPDVVTFSKKLQLGGYFHNDDFIPNEPY 363

Query:    64 RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
             R+FNTWMGDPGKVLLL+ ++  I  E LL  V   G +L N  L L +E
Sbjct:   364 RIFNTWMGDPGKVLLLEEVVKVIQEEKLLANVDVAGKVLKNGLLSLEKE 412

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

MGI|MGI:2443582 Abat "4-aminobutyrate aminotransferase" [Mus musculus (taxid:10090)]

 Score = 311 (114.5 bits), Expect = 1.9e-27, P = 1.9e-27
 Identities = 58/104 (55%), Positives = 72/104 (69%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   YR+
Sbjct:   319 HGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPSAPYRI 378

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL+ V + G  LL   L L
Sbjct:   379 FNTWLGDPSKNLLLAEVINIIKREDLLNNVARVGKTLLTGLLDL 422

GO:0001666 "response to hypoxia" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0007620 "copulation" evidence=ISO

GO:0007626 "locomotory behavior" evidence=ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010039 "response to iron ion" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0032144 "4-aminobutyrate transaminase complex" evidence=ISO

GO:0035094 "response to nicotine" evidence=ISO

GO:0042135 "neurotransmitter catabolic process" evidence=IEA

GO:0042220 "response to cocaine" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0045776 "negative regulation of blood pressure" evidence=ISO

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IMP

UNIPROTKB|J9JIL9 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 309 (113.8 bits), Expect = 2.3e-27, P = 2.3e-27
 Identities = 57/104 (54%), Positives = 70/104 (67%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   YR+
Sbjct:   296 HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI 355

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL      G +LL   L L
Sbjct:   356 FNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 399

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

UNIPROTKB|P80147 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 309 (113.8 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 57/104 (54%), Positives = 70/104 (67%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   YR+
Sbjct:   319 HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI 378

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL      G +LL   L L
Sbjct:   379 FNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 422

GO:0005829 "cytosol" evidence=TAS

GO:0048148 "behavioral response to cocaine" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;TAS

GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IDA

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=IDA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0042135 "neurotransmitter catabolic process" evidence=IC

GO:0042803 "protein homodimerization activity" evidence=ISS;IPI

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISS;IMP;IDA

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=IC

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

UNIPROTKB|P80404 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 57/104 (54%), Positives = 70/104 (67%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   YR+
Sbjct:   319 HGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI 378

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL+     G  LL   L L
Sbjct:   379 FNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDL 422

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0007620 "copulation" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0045776 "negative regulation of blood pressure" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IDA;TAS

GO:0042135 "neurotransmitter catabolic process" evidence=NAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=NAS

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IDA

GO:0007610 "behavior" evidence=NAS

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0048148 "behavioral response to cocaine" evidence=ISS

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

RGD|620948 Abat "4-aminobutyrate aminotransferase" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 57/104 (54%), Positives = 71/104 (68%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D+++FSKKM  GG+F K EF P   YR+
Sbjct:   319 HGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMSFSKKMMTGGFFHKEEFRPSAPYRI 378

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL+ V   G  LL   L L
Sbjct:   379 FNTWLGDPSKNLLLAEVINIIKREDLLNNVAHAGKTLLTGLLDL 422

GO:0001666 "response to hypoxia" evidence=IMP

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA;ISO;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISO;ISS;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0007620 "copulation" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=IC

GO:0010039 "response to iron ion" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;ISO;ISS

GO:0032144 "4-aminobutyrate transaminase complex" evidence=ISO;ISS

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=ISS

GO:0035094 "response to nicotine" evidence=IMP

GO:0042135 "neurotransmitter catabolic process" evidence=IC

GO:0042220 "response to cocaine" evidence=IMP

GO:0042493 "response to drug" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0043005 "neuron projection" evidence=IDA

GO:0045471 "response to ethanol" evidence=IDA

GO:0045776 "negative regulation of blood pressure" evidence=IMP

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=ISO;ISS

UNIPROTKB|H3BNQ7 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 57/104 (54%), Positives = 70/104 (67%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   YR+
Sbjct:   319 HGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI 378

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL+     G  LL   L L
Sbjct:   379 FNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDL 422

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|H3BRN4 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 57/104 (54%), Positives = 70/104 (67%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   YR+
Sbjct:   334 HGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI 393

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL+     G  LL   L L
Sbjct:   394 FNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDL 437

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|E1C8M8 ABAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 57/104 (54%), Positives = 69/104 (66%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D+VTFSKKM  GG+F K EF P   YR+
Sbjct:   319 HGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVVTFSKKMMTGGFFHKEEFRPNAPYRI 378

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I  I  E+L++     G  LL   L L
Sbjct:   379 FNTWLGDPSKNLLLAEVIRVIKREDLINNAAHAGKALLTGLLDL 422

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

UNIPROTKB|F1MFB7 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 56/104 (53%), Positives = 70/104 (67%)

Query:     6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
             HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K E  P   YR+
Sbjct:   319 HGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEELRPNAPYRI 378

Query:    66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
             FNTW+GDP K LLL  +I+ I  E+LL+     G +LL   L L
Sbjct:   379 FNTWLGDPSKNLLLAEVINVIKREDLLNNAAHAGKVLLTGLLDL 422

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P80404	GABT_HUMAN	2, ., 6, ., 1, ., 2, 2	0.5377	0.8907	0.212	yes	N/A
P14010	GABAT_EMENI	2, ., 6, ., 1, ., 1, 9	0.5106	0.7815	0.1867	yes	N/A
P50554	GABT_RAT	2, ., 6, ., 1, ., 2, 2	0.5377	0.8907	0.212	yes	N/A
P80147	GABT_PIG	2, ., 6, ., 1, ., 2, 2	0.5377	0.8907	0.212	yes	N/A
Q55FI1	GABT_DICDI	2, ., 6, ., 1, ., 1, 9	0.5252	0.8319	0.2	yes	N/A
Q9BGI0	GABT_BOVIN	2, ., 6, ., 1, ., 2, 2	0.5148	0.8487	0.202	yes	N/A
P61922	GABT_MOUSE	2, ., 6, ., 1, ., 2, 2	0.5471	0.8907	0.212	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	3e-42
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	6e-25
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	1e-22
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	3e-22
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	3e-18
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	1e-14
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	5e-12
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	2e-11
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	3e-11
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	1e-10
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	1e-09
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	1e-09
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	3e-09
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	3e-09
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	5e-09
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	1e-08
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	4e-08
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	8e-08
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	1e-07
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	1e-07
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	2e-07
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	4e-07
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	4e-07
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	5e-07
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	6e-07
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	7e-07
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	1e-06
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	3e-06
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	3e-06
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	3e-06
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	7e-06
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	7e-06
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	8e-06
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	1e-05
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	1e-05
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	2e-05
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-05
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	3e-05
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	4e-05
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	6e-05
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	1e-04
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	1e-04
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	2e-04
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	2e-04
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	8e-04
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	9e-04
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	0.002
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	0.003
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	0.003

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score =  143 bits (363), Expect = 3e-42
 Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 1/107 (0%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-KPEFVPQQA 62
           K H  A ++DEVQTG G  GKFW HEH++L++ PD+VTFSKK Q  GYF   P F P + 
Sbjct: 282 KKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDPAFRPNKP 341

Query: 63  YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
           YR FNTWMGDP + L+L+ II  I  ++LL+ V   GD L      L
Sbjct: 342 YRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDL 388

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score = 95.8 bits (239), Expect = 6e-25
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K HG  L+ DEVQTG G  GK +  EH+ +  +PDI+T +K +  GG  L       +  
Sbjct: 208 KKHGVLLIADEVQTGFGRTGKLFACEHYGV--TPDIMTLAKALT-GGLPLSAVLATAEIM 264

Query: 64  RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
           + F       T+ G+P        ++D I +ENLL   Q+ GD L  
Sbjct: 265 QAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQNAQEKGDYLRK 311

Length = 338

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 90.3 bits (225), Expect = 1e-22
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEF---V 58
           HG  L+ DEVQTG G  GK +  EHF +E  PDIVT  K +     LG    + E     
Sbjct: 224 HGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLGKGLGGGLPLGAVLGREEIMDAF 281

Query: 59  PQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
           P        T+ G+P        +++ +  E LL+   + G+ L  
Sbjct: 282 PAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRE 327

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score = 89.6 bits (223), Expect = 3e-22
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 12/117 (10%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----KPEFVPQ 60
           HG  L+ DEVQTG G  GK +  EHF +E  PDIVT +K +  GG  L     + E +  
Sbjct: 255 HGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLAKSLG-GGLPLSAVVGRAEIMDW 311

Query: 61  QAYRVFNTWMGDPGKVLLLKG--IIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL 115
                  T+ G+P  V       ++D I  ENLL+R  + G+ L +    L ++  L
Sbjct: 312 PPGGHGGTFGGNP--VACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPL 366

Length = 447

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 78.1 bits (193), Expect = 3e-18
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 9   ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEF--VPQQAYRV 65
           ALLI DEVQTG G  G  W ++   +   PDIV F KK Q+ G         V    + V
Sbjct: 260 ALLIFDEVQTGVGLTGTAWAYQQLGVR--PDIVAFGKKTQVCGIMAGRRVDEVEDNVFAV 317

Query: 66  ---FN-TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
               N TW G+   ++  + I++ I  + L++   + G+ LL     L  E
Sbjct: 318 SSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAE 368

Length = 443

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 68.3 bits (167), Expect = 1e-14
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK------PEFVP 59
           H + L+ DEVQTG G  G  W ++   ++  PDIV F KK Q+ G           + V 
Sbjct: 251 HDALLIFDEVQTGVGLTGTAWAYQQLGVQ--PDIVAFGKKTQVCGIMAGRRVDEVADNVF 308

Query: 60  QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
               R+ +TW G+   ++    I++ I  E L+D  +  G  LL     L  E
Sbjct: 309 AVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAE 361

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score = 60.6 bits (148), Expect = 5e-12
 Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 35/117 (29%)

Query: 6   HGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF------LKPEFV 58
           HG ALLI DEVQTG G  GK + +EH+ +E  PDI+T +K   LGG F         E  
Sbjct: 217 HG-ALLILDEVQTGLGRTGKLFAYEHYGVE--PDILTLAKA--LGGGFPIGAMLATEEIA 271

Query: 59  PQQAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
                  F       T+ G+P        VL      + +  E LL+ V++ G+ LL
Sbjct: 272 -----SAFTPGDHGSTFGGNPLACAVALAVL------EVLLEEGLLENVREKGEYLL 317

Length = 404

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score = 59.0 bits (144), Expect = 2e-11
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 23/110 (20%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG-----GYFLKPEFVPQ 60
           +G  L++DEVQTG G  GK + ++H+ +E  PDI+T +K   LG     G  L  E V  
Sbjct: 215 NGILLILDEVQTGMGRTGKLFAYQHYGIE--PDIMTLAKG--LGGGVPIGAVLAKEKVAD 270

Query: 61  QAYRVFN------TWMGDP--GKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
               VF       T+ G+P      L   +I+ I  E LL+   + G+ L
Sbjct: 271 ----VFTPGDHGSTFGGNPLACAAAL--AVIEIIEEEGLLENAAEVGEYL 314

Length = 396

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF------LKPEFVP 59
             + L+ DEVQTG G  GKF+ +EH+ +E  PDI+T +K   LGG         K E   
Sbjct: 203 KDALLIFDEVQTGIGRTGKFFAYEHYGIE--PDIITLAKG--LGGGVPIGATLAKEEV-- 256

Query: 60  QQAYRVFN---TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
            +A+   +   T+ G+P        +++ I  E LL+ V++ GD  
Sbjct: 257 AEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF 302

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPE--FVP 59
           +G  L+ DEVQTG G  GK +  EHF +E  PDI+T +K     + LG    + E  F+P
Sbjct: 254 YGILLIDDEVQTGMGRTGKMFAIEHFGVE--PDIITLAKAIAGGLPLGAVIGRAELMFLP 311

Query: 60  QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
             ++   NT+ G+P         ++ +  E LL+  QK G+ L 
Sbjct: 312 PGSHA--NTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYLR 352

Length = 441

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-----LGGYFLKPEFVPQ 60
           HG  L+ DEV  G G  GK++  EHF +   PD++TF+K +      LGG  +       
Sbjct: 247 HGIVLIADEVMAGFGRTGKWFAIEHFGVV--PDLITFAKGVNSGYVPLGGVAISEAIAAT 304

Query: 61  QAYRVFN---TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG 108
            A R +    T+ G P         I+ +  E +++   + G  +L   L 
Sbjct: 305 FADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLR 355

Length = 451

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 15/104 (14%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFV--- 58
           HG  L++DEVQ+G G  GK++  EHF +E  PDI+T  K     + +     + E +   
Sbjct: 237 HGILLVVDEVQSGLGRTGKWFAIEHFGVE--PDIITLGKPLGGGLPISATIGRAEIMDSL 294

Query: 59  --PQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGD 100
                A+    T  G+P        +I+ I  +NLL R +K G+
Sbjct: 295 PPLAHAF----TLSGNPVASAAALAVIEEIEEKNLLKRAEKLGN 334

Length = 443

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKM--------QLGGYFLKP 55
           K  G+ L+IDEVQTG G  G  + +E F L+  PDIVT +K +         +G   L  
Sbjct: 198 KKFGALLIIDEVQTGIGRTGTLFAYEQFGLD--PDIVTVAKGLGNGIPVGAMIGKKELGT 255

Query: 56  EFVPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
            F P      F    G+P  +   K ++  I   + L+ VQ+ G+  L 
Sbjct: 256 AFGPGSHGSTFG---GNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQ 301

Length = 377

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 26/114 (22%)

Query: 7   GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPEFVPQQ 61
           G+ L++DEVQTG G  GK +  EH +++  PDI+  +K      M +G      E     
Sbjct: 265 GALLILDEVQTGMGRTGKMFACEHENVQ--PDILCLAKALGGGVMPIGATIATEE----- 317

Query: 62  AYRVF-----NTWMGDP---GKVLLLKGIIDTIH---NENLLDRVQKTGDILLN 104
              VF     N ++      G  L     + TI+    +NL  + ++ GD LL+
Sbjct: 318 ---VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLD 368

Length = 459

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 33/115 (28%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
           HG+ L++DEVQTG G  G ++ H+H  +   PD+VT +K   LGG        P  A   
Sbjct: 216 HGALLVLDEVQTGIGRTGAWFAHQHDGVT--PDVVTLAKG--LGGGL------PIGACLA 265

Query: 66  FNTWMGDPGKVLLLKG------------------IIDTIHNENLLDRVQKTGDIL 102
           F      P   LL  G                  ++DTI +E LL+  ++ G+ L
Sbjct: 266 F-----GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQL 315

Length = 398

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG----GYFLKPEFVP 59
             HG   + DE+QTG    GK++  EHFD+   PD++T SK +  G    G   + E + 
Sbjct: 250 SEHGILFVADEIQTGFARTGKYFAIEHFDVV--PDLITVSKSLGAGVPISGVIGRKEIMD 307

Query: 60  QQAY-RVFNTWMGDP-GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           + A   +  T+ G P G    L  ++D I  ENL DR  + G +++N    +  +
Sbjct: 308 ESAPGELGGTYAGSPLGCAAALA-VLDIIEKENLNDRAIELGKVVMNRFEEMKNK 361

Length = 451

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K HG  L++DEVQTG G  G  + +E   +E  PDI+T  K   +GG       + +   
Sbjct: 210 KQHGLLLIVDEVQTGCGRTGTLFAYELSGIE--PDIMTLGKG--IGGGVPLAALLAKAEV 265

Query: 64  RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL------LNVRLGLGQ 111
            VF       T+ G+P    +   +I  +     L+ V+  G+ L      L+   GL  
Sbjct: 266 AVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEG 325

Query: 112 E 112
           E
Sbjct: 326 E 326

Length = 395

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 16/112 (14%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPE---- 56
           HG+ L+ DEV  G G  GK +   ++ +   PDI+T +K      + L    +K E    
Sbjct: 246 HGALLISDEVICGFGRTGKAFGFMNYGV--KPDIITMAKGITSAYLPLSATAVKKEIYEA 303

Query: 57  FVPQQAYRVF---NTWMGDPGK-VLLLKGIIDTIHNENLLDRVQKTGDILLN 104
           F  +  Y  F   NT+ G+P    L LK  ++ + NENL++R  + G++LL 
Sbjct: 304 FKGKGEYEHFRHVNTFGGNPAACALALKN-LEIMENENLIERSAQLGELLLE 354

Length = 451

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 2   YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEF 57
           Y +  G  L++DEVQTG G  GK +  EH+ +E  PDI T +K +     +G    K   
Sbjct: 194 YCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE--PDIFTLAKGLANGVPVGAMLAKSSL 251

Query: 58  VPQQAYRVFNTWMGDPGKVLLL---KGIIDTIHNENLLDRVQKTGDILL 103
                Y    +  G  G  L +      +D +     L++  + G+ L 
Sbjct: 252 GGAFGYGSHGSTFG--GNKLSMAAASATLDIMLTAGFLEQALENGNYLQ 298

Length = 375

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K +   L++DE+QTG G  GK   H+H  ++  PDIV   K +  G Y +          
Sbjct: 209 KKYNVLLIVDEIQTGLGRTGKLLAHDHEGVK--PDIVLLGKALSGGLYPISAVLANDDVM 266

Query: 64  RVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
            V        T+ G+P    +    ++ +  E L +  Q+ G++  
Sbjct: 267 LVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFR 312

Length = 400

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
           HG  ++ DEVQ+G    GK +  +H+   + PD++T +K     M L G       +   
Sbjct: 231 HGIVMIADEVQSGFARTGKLFAMDHY--ADKPDLMTMAKSLAGGMPLSGVVGNANIMDAP 288

Query: 62  AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
           A   +  T+ G+P  V     +++ I  E+L +R  + G  L
Sbjct: 289 APGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRL 330

Length = 421

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVP 59
           + HG   + DEVQTG    G  +  EH   E  PD++T +K     + L G   + E + 
Sbjct: 228 REHGIVFIADEVQTGFARTGAMFACEHEGPE--PDLITTAKSLADGLPLSGVTGRAEIMD 285

Query: 60  QQAY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
             A   +  T+ G+P        ++  I +E L++R ++ G ++ +
Sbjct: 286 APAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTD 331

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQ- 60
           HG  L+ DEVQTG G  G+++  + F +   PDI+T +K     + L       E + Q 
Sbjct: 240 HGILLIFDEVQTGFGRTGEWFAAQTFGVV--PDIMTIAKGIASGLPLSAVVASKELMEQW 297

Query: 61  QAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
                  T+ G+P         ++ I  E LLD   + G   L
Sbjct: 298 PLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYAL 340

Length = 433

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
           HG  L+ DEVQTG    GK +  E++D    PD++T +K     M +     + E +   
Sbjct: 231 HGILLIADEVQTGFARTGKLFAMEYYD--VKPDLITMAKSLGGGMPISAVVGRAEVMDAP 288

Query: 62  AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNV 105
           A   +  T+ G+P  V     ++D I  E L  R    G  L+ V
Sbjct: 289 APGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEV 333

Length = 421

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
           +G  L+ DEVQ G G  GK + HE   +   PDI+  +K +  GG F
Sbjct: 208 NGLLLIFDEVQCGMGRTGKLFAHEWAGVT--PDIMAVAKGI--GGGF 250

Length = 389

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----KPEFVPQ 60
           HG  L+ DEVQTG G  G  +  E   +  + D+ TF+K +  GG+ L     + E +  
Sbjct: 232 HGIMLIADEVQTGAGRTGTLFAMEQMGV--AADLTTFAKSIA-GGFPLAGVTGRAEVMDA 288

Query: 61  QAY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
            A   +  T+ G+P        ++     ENLL +    G+ L
Sbjct: 289 IAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKL 331

Length = 425

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-------FLKPE 56
           H   L++D++Q G G  G F+  E   +   PDIVT SK   + GY        +KPE
Sbjct: 231 HDILLIVDDIQAGCGRTGTFFSFERAGIT--PDIVTLSK--SISGYGLPMALVLIKPE 284

Length = 425

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK----KMQLGGYFLKPEFVPQQ 61
           HG  L++DEVQTG G  GK++  E F+++  PD++ F K     M L G   + E +   
Sbjct: 255 HGILLVMDEVQTGIGRTGKWFASEWFEVK--PDLIIFGKGVASGMGLSGVIGRKELMDLT 312

Query: 62  AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES 113
           +     T   +P      +  ++ I  ENLL    K G+ +   RL   +ES
Sbjct: 313 SGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKK-RLLEMKES 363

Length = 457

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF------LKPEFVP 59
           HG  L++DEVQ G    GK +  EH  +E  PDI+  SK   +GG        +K EF  
Sbjct: 258 HGILLIVDEVQAGFARTGKMFAFEHAGIE--PDIIVMSKA--VGGGLPLAVLGIKKEFDA 313

Query: 60  QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
            Q      T+ G+   +      +  +  ENL     + G+ L
Sbjct: 314 WQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWL 356

Length = 459

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 27/117 (23%)

Query: 4   KYHGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYF-LKPEFVPQ 60
             +G  LLI DEV TG G  GK +  EH  +   PDI+  +K   L GGY  L       
Sbjct: 246 DKYG-ILLIADEVATGFGRTGKMFACEHAGI--VPDILCLAK--GLTGGYLPLSAVLTSD 300

Query: 61  QAYRVFNTWMGDPGKVLL---------------LKGIIDTIHNENLLDRVQKTGDIL 102
              R++  +        +               L   +D +  E+LL+RV + G  L
Sbjct: 301 ---RIYEAFSDGDAGAFMHGHTYSGNPLACAAALA-NLDILEEEDLLERVAEIGAYL 353

Length = 449

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 5/45 (11%)

Query: 9   ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
           ALLI DEVQTG G  G  + + H+ +  +PDI+T +K   LGG F
Sbjct: 219 ALLIFDEVQTGMGRTGDLFAYMHYGV--TPDILTSAKA--LGGGF 259

Length = 403

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 7   GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
           G+ L+ DEVQ G G  G  W HE + +E  PDI+T +K
Sbjct: 201 GALLVFDEVQCGLGRTGYLWAHEAYGVE--PDIMTLAK 236

Length = 382

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 7   GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
           G  L++DE+Q+G G  GK +  EH  +   PD+V  SK
Sbjct: 265 GIPLIVDEIQSGFGRTGKMFAFEHAGII--PDVVVLSK 300

Length = 464

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 23/110 (20%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYR- 64
           HG  L+ DEVQTG    GK +  EH ++  + D+ T +K   L G F      P  A   
Sbjct: 231 HGILLIADEVQTGFARTGKLFAMEHHEV--AADLTTMAKG--LAGGF------PLAAVTG 280

Query: 65  ------------VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
                       +  T+ G+P  +     ++D I  E+L +R  + G+ L
Sbjct: 281 RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRL 330

Length = 425

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVP 59
           + HG    +D++Q G G  GK+    HF++   PD+++F K     M +     + E + 
Sbjct: 238 REHGILFAVDDIQQGLGRTGKWSSISHFNIT--PDLMSFGKSLAGGMPMSAIVGRKEIME 295

Query: 60  --QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTG 99
             +    +F T   +P         ID I +E+LL R  + G
Sbjct: 296 SLEAPAHLFTT-GANPVSCAAALATIDMIEDESLLQRSAEKG 336

Length = 445

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 4   KYHGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
           K++   LLI DE+QTG G  GK  C +H +++  PDIV   K +  G Y
Sbjct: 218 KHN--VLLIADEIQTGLGRTGKLLCVDHENVK--PDIVLLGKALSGGVY 262

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 7   GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF 66
           G+ L++DEVQTG G  GK +  EH  ++  PDI+  +K +  G   +      +  + V 
Sbjct: 258 GALLILDEVQTGMGRTGKMFACEHEGVQ--PDILCLAKALGGGVMPIGATIATEAVFSVL 315

Query: 67  --------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
                    T+ G+P         I+ +  +NL  +    GD LL+
Sbjct: 316 FDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLD 361

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
           H   L++DEVQ G G  G  +  EH  +E  PD V  SK     + L    + PEF   Q
Sbjct: 239 HDIKLILDEVQAGFGRSGTMFAFEHAGIE--PDFVVMSKAVGGGLPLAVLLIAPEFDAWQ 296

Query: 62  AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
                 T+ G+   ++     ++   ++NL    Q+ G+ + +    + +E
Sbjct: 297 PAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKE 347

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
           H   L+IDE+  G G  G+++ H+ + +E  PDI+   K   LGG
Sbjct: 261 HNVLLIIDEIPNGMGRTGEWFTHQAYGIE--PDILCIGKG--LGG 301

Length = 459

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
           H + L+ DEVQTG G  G+ + + H+ +   PD++T +K   LGG F
Sbjct: 216 HNALLIFDEVQTGVGRTGELYAYMHYGVT--PDVLTTAKA--LGGGF 258

Length = 406

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-------FLKPE 56
           H   L++D++Q G G  G F+  E   +E  PDIV  SK   + GY        +KPE
Sbjct: 227 HDILLIVDDIQAGCGRTGTFFSFEPAGIE--PDIVCLSK--SISGYGLPLALTLIKPE 280

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
           H + L+ DEVQTG G  G+ + + H+ +  +PDI+T +K   LGG F
Sbjct: 212 HNALLIFDEVQTGVGRTGELYAYMHYGV--TPDILTSAKA--LGGGF 254

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 7   GSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKM----QLGGYFLKPE----F 57
           G   + DEVQ G G  G  +W  E   +   PDIVT  K +     +G      E    F
Sbjct: 818 GGVCIADEVQVGFGRVGSHWWAFETQGV--VPDIVTMGKPIGNGHPMGAVVTTREIADSF 875

Query: 58  VPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
                Y  FNT+ G+P    +   ++D I +E+L     + G+ LL
Sbjct: 876 DNGMEY--FNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLL 919

Length = 1013

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 18/103 (17%)

Query: 13  DEVQTGGGPCGKFWC-HEHFDLEESPDIVTFSKKMQ-----LGGYFLKPEFV-----PQQ 61
           DEV TG G  G F+     F ++  PDI+TF+K +      LG   +    +     P  
Sbjct: 260 DEVVTGFGRLGHFFASEAVFGIQ--PDIITFAKGLTSGYQPLGAVIISERLLDVISGPNA 317

Query: 62  AYRVFN---TWMGDP-GKVLLLKGIIDTIHNENLLDRVQKTGD 100
              VF    T+ G P      LK  I+ +  E L + V++ G 
Sbjct: 318 KGNVFTHGFTYSGHPVACAAALKN-IEIMEREGLCEHVREVGP 359

Length = 466

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-----LGGYFLKPE---- 56
           HG  L+ DEV TG G  G  +  ++F +  +PD++T +K +      +G  F+  E    
Sbjct: 248 HGILLIFDEVITGFGRLGAPFAAQYFGV--TPDLLTCAKGLTNGAIPMGAVFVSSEIHDA 305

Query: 57  FV--PQQAYRVFN--TWMGDPGKVLLLKGIIDTIHNENLLDR 94
           F+  P+     F+  T+ G P         +D    E LL R
Sbjct: 306 FMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTR 347

Length = 442

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score = 37.2 bits (86), Expect = 9e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF 52
           H + L++DE+Q G G  G  +   H+  + +PDIVT +K   LGG F
Sbjct: 220 HDALLVLDEIQCGMGRTGTLFA--HWQEQVTPDIVTLAKA--LGGGF 262

Length = 408

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK 44
           LL+ DEV  G G  G+++  +HF ++  PD++T +K
Sbjct: 255 LLVADEVICGFGRTGEWFGSQHFGIK--PDLMTIAK 288

Length = 456

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 13  DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG 49
           DEV TG G  G  +  EH+ +E  PDI+T  K +  G
Sbjct: 240 DEVMTGLGRTGAMFAMEHWGVE--PDIMTLGKGLGAG 274

Length = 447

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 13/44 (29%)

Query: 6   HGSALLIDEVQTG-----GGPCGKFWCHEHFDLEESPDIVTFSK 44
           HG+ L+ DEV TG     GG         ++ +E  PD+ T  K
Sbjct: 233 HGALLIFDEVITGFRVALGG------AQGYYGVE--PDLTTLGK 268

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
KOG1402|consensus	427		100.0
KOG1404|consensus	442		100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07482	461	hypothetical protein; Provisional	99.98
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.98
PRK07483	443	hypothetical protein; Provisional	99.97
PRK05965	459	hypothetical protein; Provisional	99.97
PRK07678	451	aminotransferase; Validated	99.97
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.97
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.97
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.97
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.97
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
PRK07481	449	hypothetical protein; Provisional	99.97
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.97
PRK12403	460	putative aminotransferase; Provisional	99.97
PRK07480	456	putative aminotransferase; Validated	99.97
PRK06062	451	hypothetical protein; Provisional	99.97
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.97
PRK06105	460	aminotransferase; Provisional	99.97
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.97
PRK07036	466	hypothetical protein; Provisional	99.97
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.97
PRK06917	447	hypothetical protein; Provisional	99.97
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.97
PRK06148	1013	hypothetical protein; Provisional	99.96
PRK08297	443	L-lysine aminotransferase; Provisional	99.96
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.96
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.96
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.96
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.96
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.96
PRK06149	972	hypothetical protein; Provisional	99.96
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.96
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.96
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.96
KOG1401|consensus	433		99.95
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.95
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.95
PRK06541	460	hypothetical protein; Provisional	99.95
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.95
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.95
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.95
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.94
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.94
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.94
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.94
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.94
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.94
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.94
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.94
KOG1403|consensus	452		99.94
PLN00144	382	acetylornithine transaminase	99.94
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.93
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.93
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.93
PRK07046	453	aminotransferase; Validated	99.93
KOG1405|consensus	484		99.93
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.93
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.92
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.92
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.92
PLN02624	474	ornithine-delta-aminotransferase	99.92
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.91
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.91
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.9
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.9
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.9
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.89
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.88
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.87
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.87
PRK04260	375	acetylornithine aminotransferase; Provisional	99.86
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.85
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.84
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.84
PRK02627	396	acetylornithine aminotransferase; Provisional	99.83
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.83
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.82
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.75
PLN02822	481	serine palmitoyltransferase	99.71
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.68
PRK09064	407	5-aminolevulinate synthase; Validated	99.67
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.66
PLN02955	476	8-amino-7-oxononanoate synthase	99.66
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.64
KOG1359|consensus	417		99.62
PRK13393	406	5-aminolevulinate synthase; Provisional	99.62
KOG1360|consensus	570		99.47
PRK13392	410	5-aminolevulinate synthase; Provisional	99.47
PRK07505	402	hypothetical protein; Provisional	99.42
PLN02483	489	serine palmitoyltransferase	99.35
PRK07179	407	hypothetical protein; Provisional	99.29
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.27
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.23
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.2
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.17
KOG1357|consensus	519		99.16
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.1
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.1
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.06
PLN03226	475	serine hydroxymethyltransferase; Provisional	98.97
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	98.92
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	98.82
PRK13034	416	serine hydroxymethyltransferase; Reviewed	98.8
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	98.77
cd00609	350	AAT_like Aspartate aminotransferase family. This f	98.55
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.51
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	98.5
PTZ00094	452	serine hydroxymethyltransferase; Provisional	98.48
KOG1358|consensus	467		98.4
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	98.35
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	98.34
PRK06225	380	aspartate aminotransferase; Provisional	98.33
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	98.27
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.25
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	98.24
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	98.2
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	98.18
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	98.17
PRK07324	373	transaminase; Validated	98.17
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	98.17
PRK06108	382	aspartate aminotransferase; Provisional	98.16
TIGR01814	406	kynureninase kynureninase. This model describes ky	98.1
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	98.1
PRK07682	378	hypothetical protein; Validated	98.09
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	98.07
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	98.03
PRK02948	381	cysteine desulfurase; Provisional	98.03
PRK00950	361	histidinol-phosphate aminotransferase; Validated	97.96
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	97.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	97.92
PRK13520	371	L-tyrosine decarboxylase; Provisional	97.89
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	97.89
PRK06460	376	hypothetical protein; Provisional	97.88
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	97.86
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	97.86
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	97.84
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	97.83
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	97.83
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	97.82
PRK05764	393	aspartate aminotransferase; Provisional	97.79
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	97.79
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	97.75
PRK02731	367	histidinol-phosphate aminotransferase; Validated	97.74
PRK07777	387	aminotransferase; Validated	97.73
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	97.73
PRK10874	401	cysteine sulfinate desulfinase; Provisional	97.71
PRK10534	333	L-threonine aldolase; Provisional	97.7
PRK07550	386	hypothetical protein; Provisional	97.69
PLN00175	413	aminotransferase family protein; Provisional	97.67
PRK09082	386	methionine aminotransferase; Validated	97.64
PLN02721	353	threonine aldolase	97.64
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	97.63
PLN02509	464	cystathionine beta-lyase	97.61
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	97.6
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	97.58
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	97.58
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	97.57
PRK05942	394	aspartate aminotransferase; Provisional	97.56
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	97.56
PRK06290	410	aspartate aminotransferase; Provisional	97.55
PRK07681	399	aspartate aminotransferase; Provisional	97.55
PRK08361	391	aspartate aminotransferase; Provisional	97.55
PRK06767	386	methionine gamma-lyase; Provisional	97.55
PRK14012	404	cysteine desulfurase; Provisional	97.55
PRK08249	398	cystathionine gamma-synthase; Provisional	97.54
PRK06425	332	histidinol-phosphate aminotransferase; Validated	97.53
PRK08960	387	hypothetical protein; Provisional	97.53
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	97.53
PRK08912	387	hypothetical protein; Provisional	97.53
PRK08175	395	aminotransferase; Validated	97.52
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	97.52
PRK08068	389	transaminase; Reviewed	97.51
PRK07309	391	aromatic amino acid aminotransferase; Validated	97.5
PRK06348	384	aspartate aminotransferase; Provisional	97.47
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	97.47
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	97.46
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	97.46
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	97.45
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	97.45
PRK03321	352	putative aminotransferase; Provisional	97.45
PLN02651	364	cysteine desulfurase	97.43
PRK07568	397	aspartate aminotransferase; Provisional	97.42
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	97.42
PLN02242	418	methionine gamma-lyase	97.4
PRK08056	356	threonine-phosphate decarboxylase; Provisional	97.4
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	97.39
PRK07683	387	aminotransferase A; Validated	97.37
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	97.36
PRK09148	405	aminotransferase; Validated	97.35
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	97.35
PRK08574	385	cystathionine gamma-synthase; Provisional	97.34
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	97.34
PRK07503	403	methionine gamma-lyase; Provisional	97.33
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	97.32
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	97.32
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	97.28
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	97.27
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	97.25
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	97.25
PTZ00433	412	tyrosine aminotransferase; Provisional	97.23
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	97.23
PRK07337	388	aminotransferase; Validated	97.22
PRK07811	388	cystathionine gamma-synthase; Provisional	97.21
PRK07582	366	cystathionine gamma-lyase; Validated	97.21
PLN02409	401	serine--glyoxylate aminotransaminase	97.21
PRK08363	398	alanine aminotransferase; Validated	97.2
PRK06358	354	threonine-phosphate decarboxylase; Provisional	97.19
PRK05957	389	aspartate aminotransferase; Provisional	97.18
PRK12414	384	putative aminotransferase; Provisional	97.17
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	97.14
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	97.14
PRK06234	400	methionine gamma-lyase; Provisional	97.12
PRK05968	389	hypothetical protein; Provisional	97.09
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	97.09
PRK08247	366	cystathionine gamma-synthase; Reviewed	97.09
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	97.08
PLN02187	462	rooty/superroot1	97.05
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	97.04
PRK07366	388	succinyldiaminopimelate transaminase; Validated	97.03
PRK06207	405	aspartate aminotransferase; Provisional	97.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	96.99
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	96.99
PLN02368	407	alanine transaminase	96.99
PRK08636	403	aspartate aminotransferase; Provisional	96.98
PRK09105	370	putative aminotransferase; Provisional	96.97
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	96.96
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	96.95
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	96.95
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	96.92
KOG2862|consensus	385		96.9
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	96.87
PRK08776	405	cystathionine gamma-synthase; Provisional	96.87
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	96.86
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	96.85
PRK07269	364	cystathionine gamma-synthase; Reviewed	96.82
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	96.82
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	96.81
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	96.81
PRK07392	360	threonine-phosphate decarboxylase; Validated	96.78
PRK01533	366	histidinol-phosphate aminotransferase; Validated	96.76
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	96.74
PRK04311	464	selenocysteine synthase; Provisional	96.73
PRK06107	402	aspartate aminotransferase; Provisional	96.73
PRK08354	311	putative aminotransferase; Provisional	96.73
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	96.72
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	96.7
PRK06855	433	aminotransferase; Validated	96.7
PLN02656	409	tyrosine transaminase	96.7
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	96.69
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	96.68
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	96.63
PTZ00376	404	aspartate aminotransferase; Provisional	96.62
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	96.58
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	96.48
PRK07049	427	methionine gamma-lyase; Validated	96.47
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	96.41
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	96.37
PRK08045	386	cystathionine gamma-synthase; Provisional	96.35
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	96.34
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	96.34
PRK04366	481	glycine dehydrogenase subunit 2; Validated	96.31
PRK09257	396	aromatic amino acid aminotransferase; Provisional	96.27
PRK07671	377	cystathionine beta-lyase; Provisional	96.27
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	96.25
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	96.25
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	96.23
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	96.19
PLN02397	423	aspartate transaminase	96.18
PRK05839	374	hypothetical protein; Provisional	96.17
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	96.11
PTZ00377	481	alanine aminotransferase; Provisional	96.1
PRK08861	388	cystathionine gamma-synthase; Provisional	96.08
PRK09265	404	aminotransferase AlaT; Validated	96.07
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	95.96
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	95.95
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	95.89
PRK07050	394	cystathionine beta-lyase; Provisional	95.88
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	95.86
PLN02271	586	serine hydroxymethyltransferase	95.85
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	95.81
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	95.79
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	95.76
PRK13237	460	tyrosine phenol-lyase; Provisional	95.75
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	95.71
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	95.69
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	95.68
PRK07908	349	hypothetical protein; Provisional	95.65
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	95.54
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	95.35
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	95.33
PLN02672	1082	methionine S-methyltransferase	95.24
PRK05967	395	cystathionine beta-lyase; Provisional	95.14
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	95.14
PRK05367	954	glycine dehydrogenase; Provisional	95.13
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	95.05
KOG0257|consensus	420		94.93
PRK09028	394	cystathionine beta-lyase; Provisional	94.74
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	94.53
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	94.48
PLN02231	534	alanine transaminase	94.47
PRK08064	390	cystathionine beta-lyase; Provisional	94.35
PRK05939	397	hypothetical protein; Provisional	94.25
PRK06434	384	cystathionine gamma-lyase; Validated	93.99
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	93.97
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	93.87
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	93.79
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	93.45
PRK00451	447	glycine dehydrogenase subunit 1; Validated	93.37
PRK06836	394	aspartate aminotransferase; Provisional	93.35
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	93.14
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	93.12
PRK02769	380	histidine decarboxylase; Provisional	92.88
PRK08637	388	hypothetical protein; Provisional	92.65
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	92.11
PLN02414	993	glycine dehydrogenase (decarboxylating)	92.01
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	91.57
PRK15029	755	arginine decarboxylase; Provisional	91.1
KOG0633|consensus	375		90.96
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	90.77
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	90.76
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	90.64
PLN02724	805	Molybdenum cofactor sulfurase	90.21
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	89.73
KOG0256|consensus	471		89.59
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	88.78
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	88.65
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	88.5
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	88.25
PRK03080	378	phosphoserine aminotransferase; Provisional	88.14
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	87.94
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	86.62
PRK08114	395	cystathionine beta-lyase; Provisional	85.63
KOG1368|consensus	384		85.47
PRK09275	527	aspartate aminotransferase; Provisional	85.14
PRK12566	954	glycine dehydrogenase; Provisional	84.04
PLN02880	490	tyrosine decarboxylase	80.95
PLN03032	374	serine decarboxylase; Provisional	80.62

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-38  Score=240.48  Aligned_cols=114  Identities=29%  Similarity=0.452  Sum_probs=105.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccccc------ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~------~~~~~~~~T~~~~p~   74 (119)
                      +||++||+|||+||||||+||||++|++||+|++  |||+|++|+| +||+|++..+..      ..+..|+|||+|||+
T Consensus       212 ~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~--PDI~tlaK~L-gGG~PigA~la~~~~~~~~~~G~HgSTfGGNpL  288 (404)
T COG4992         212 ELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVE--PDILTLAKAL-GGGFPIGAMLATEEIASAFTPGDHGSTFGGNPL  288 (404)
T ss_pred             HHHHHhCeEEEEeccccCCCccchHHHHHHhCCC--CCEEEeeccc-cCCccceeeEEchhhhhcCCCCcccCCCCcCHH
Confidence            5899999999999999999999999999999999  9999999999 688888765432      356789999999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS  118 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~  118 (119)
                      +|+++.++|+++.++++.+++++.|++|+++|+++..+|| +++
T Consensus       289 acAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~-~v~  331 (404)
T COG4992         289 ACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYP-LVK  331 (404)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCC-cee
Confidence            9999999999999999999999999999999999999999 443

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=235.95  Aligned_cols=114  Identities=35%  Similarity=0.477  Sum_probs=105.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|+|||++||+|||||||||||++|++|++|++  |||+|+||+| +||+|++.     ++++..+..+.+||+|||++
T Consensus       250 ~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~--PDivt~aK~i-g~G~Pl~avv~r~ei~~~~~g~~~~Tf~GNpva  326 (447)
T COG0160         250 KLCREHGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLAKSL-GGGLPLSAVVGRAEIMDWPPGGHGGTFGGNPVA  326 (447)
T ss_pred             HHHHHcCCEEEEeccccCCCccccchhhhhcCCC--CCEEEecccc-cCCCceeEEeccHHhcccCCcccCCCCCcCHHH
Confidence            4899999999999999999999999999999998  9999999999 57888764     35555678899999999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |++++++|++|+++++.+|+.++|++++++|++++++||.|-
T Consensus       327 ~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig  368 (447)
T COG0160         327 CAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIG  368 (447)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCcee
Confidence            999999999999999999999999999999999999999764

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=1.7e-34  Score=223.50  Aligned_cols=114  Identities=29%  Similarity=0.390  Sum_probs=102.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc----------ccc--ccccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE----------FVP--QQAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~----------~~~--~~~~~~~~T   68 (119)
                      ++|++||+|||+|||.|||||||++|++|++|+.  |||+|+||+| +|||.|.+.          +.+  ....+|+.|
T Consensus       243 ~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~--PDi~~~aKGL-T~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~T  319 (449)
T COG0161         243 EICDKYGILLIADEVATGFGRTGKMFACEHAGIV--PDILCLAKGL-TGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHT  319 (449)
T ss_pred             HHHHHcCcEEEeecceeCCCcCchhhhhhhcCCC--CCeeeecccc-cccchhhHhHhhhHHHHHHHhcccCCeeccCCc
Confidence            5899999999999999999999999999999998  9999999999 999987532          222  234568899


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |+|||++||+|+++|++++++++.+++++++.+|+++|+++..++|.|.
T Consensus       320 YsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vg  368 (449)
T COG0161         320 YSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVG  368 (449)
T ss_pred             cccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence            9999999999999999999999999999999999999999777778774

>KOG1402|consensus

Probab=100.00  E-value=7.8e-34  Score=211.26  Aligned_cols=116  Identities=24%  Similarity=0.291  Sum_probs=106.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-------cccccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-------FVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-------~~~~~~~~~~~T~~~~p   73 (119)
                      +||++|++++|+||||||+||||++++++|.++.  |||+.|||+| +||++|-+.       +....+..|+|||+|||
T Consensus       235 eLCtkynvl~I~DEvQTGl~RTGk~la~d~env~--PDivilgKal-SGG~~Pvsavl~~~~im~~~~pgeHgsTyggNp  311 (427)
T KOG1402|consen  235 ELCTKYNVLLIADEVQTGLARTGKLLACDYENVR--PDIVILGKAL-SGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNP  311 (427)
T ss_pred             HHHHhhcEEEEehhhhhcccccCcEEEeehhhcC--CCeEEEeccc-cCCeeeeEEEEecHHHHhccCCCccccccCCCh
Confidence            5899999999999999999999999999999998  9999999999 788876432       23356788999999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPST  119 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~~  119 (119)
                      ++|+++.|+|++|.++++.+|..++|..|+.+|+++.+++|.++++
T Consensus       312 Lg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~  357 (427)
T KOG1402|consen  312 LGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKE  357 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhe
Confidence            9999999999999999999999999999999999999999998874

>KOG1404|consensus

Probab=100.00  E-value=1.2e-33  Score=213.46  Aligned_cols=115  Identities=29%  Similarity=0.432  Sum_probs=104.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccc-----c--ccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFV-----P--QQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~-----~--~~~~~~~~T~~~~p   73 (119)
                      ++||++|.++|+|||||||||||.+|++|++++.  |||+|++|+| ++|+|+++.+.     +  .+...+++||+|||
T Consensus       240 ~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~--PDIvTmAKgi-GnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP  316 (442)
T KOG1404|consen  240 KVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVV--PDIVTMAKGI-GNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNP  316 (442)
T ss_pred             HHHHHcCCEEEehhhhhccccccccccccccCCC--ccHHHHHhhc-cCCCcceeeecCHHHHHHHHhccccccccCCCc
Confidence            4799999999999999999999999999999999  9999999999 57788765432     2  12344899999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS  118 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~  118 (119)
                      ++|++++++|+++++++++++..+.|.+|+++|.+++++||+|.+
T Consensus       317 ~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGd  361 (442)
T KOG1404|consen  317 VACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGD  361 (442)
T ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceee
Confidence            999999999999999999999999999999999999999999864

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=6.5e-33  Score=217.51  Aligned_cols=114  Identities=23%  Similarity=0.265  Sum_probs=101.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccc----c-ccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFV----P-QQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~----~-~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||||++|+++++|+.  |||+|+||+| +||+|++..+.    + ..+..|++||++||++
T Consensus       259 ~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~--PDiv~~gKgl-ggG~PlsAv~~~~~~~~~~~~~~~~T~~gnpla  335 (464)
T PRK06938        259 RITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGII--PDVVVLSKAI-GGSLPLAVVVYREWLDTWQPGAHAGTFRGNQMA  335 (464)
T ss_pred             HHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCC--CCEEEeeccc-cCCCceEEEeehhHhhccCCCCCCCCCCcCHHH
Confidence            5899999999999999999999999999999998  9999999999 67887654322    1 2234688999999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |++++++|++++++++.++++++|++|+++|++++++||.|.
T Consensus       336 ~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~  377 (464)
T PRK06938        336 MAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLG  377 (464)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            999999999999999999999999999999999999999653

>PRK07482 hypothetical protein; Provisional

Probab=99.98  E-value=1.1e-32  Score=215.97  Aligned_cols=114  Identities=24%  Similarity=0.259  Sum_probs=100.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc--------ccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ--------QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~--------~~~~~~   66 (119)
                      +||++||++||+|||||||||||++|+++++|++  |||+|+||+| +||| |++.     ++.+.        ....|+
T Consensus       248 ~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~  324 (461)
T PRK07482        248 AVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE--PDLITVAKGL-TSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHG  324 (461)
T ss_pred             HHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC--CCEEEEcccc-ccCccccceeeecHHHHHHHhcccccCCccccC
Confidence            5899999999999999999999999999999998  9999999999 7887 4432     22211        123578


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +||++||++|++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus       325 ~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~  375 (461)
T PRK07482        325 WTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVG  375 (461)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999999999999999999999999999999999998763

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.98  E-value=1.4e-32  Score=215.40  Aligned_cols=114  Identities=26%  Similarity=0.278  Sum_probs=101.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccc-----ccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEF-----VPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~-----~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||||++|+++++|+.  |||+|+||+| +||+|++...     ....+..|++||++||++
T Consensus       253 ~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~--PDivt~gK~l-~gG~Pi~av~~~~~~~~~~~~~~~~T~~gnpla  329 (459)
T PRK06931        253 EVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIE--PDIIVMSKAV-GGGLPLAVLGIKKEFDAWQPGGHTGTFRGNQLA  329 (459)
T ss_pred             HHHHHcCCEEEEecchhcCCcCchHHHhhhcCCC--CCEEEecccc-cCCcceeeeeeHHHHhhccCCCCCCCCCCCHHH
Confidence            5899999999999999999999999999999998  9999999999 6788764322     112235688999999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus       330 ~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~  371 (459)
T PRK06931        330 MATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIG  371 (459)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            999999999999999999999999999999999999999653

>PRK07483 hypothetical protein; Provisional

Probab=99.97  E-value=1.8e-32  Score=213.88  Aligned_cols=114  Identities=21%  Similarity=0.256  Sum_probs=100.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----cccc---c--ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQ---Q--AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~---~--~~~~~~T~   69 (119)
                      ++|+|||++||+|||||||||||++|+++++|++  |||+|+||+| +||+ |++..     +.+.   .  ...|++||
T Consensus       228 ~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~  304 (443)
T PRK07483        228 EVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVA--PDLVTIAKGL-GAGYQPIGAVLASDRIYDAIADGSGFFQHGHTY  304 (443)
T ss_pred             HHHHHhCCEEEEecceeCcccCcHHHHHhhcCCC--CCeeeehhhh-ccCccccEEEEEcHHHHHHHhcCCCccccCCCC
Confidence            5899999999999999999999999999999998  9999999999 7887 54322     2221   1  12578999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ++||++|++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus       305 ~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  352 (443)
T PRK07483        305 LGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVG  352 (443)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            999999999999999999999999999999999999999988898653

>PRK05965 hypothetical protein; Provisional

Probab=99.97  E-value=2.5e-32  Score=213.96  Aligned_cols=112  Identities=22%  Similarity=0.217  Sum_probs=98.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----cccc---c-----cccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQ---Q-----AYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~---~-----~~~~~   66 (119)
                      ++|++||++||+|||||||||||++|+++++|++  |||+|+||+| +||+ |++..     +.+.   .     ...|+
T Consensus       243 ~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~  319 (459)
T PRK05965        243 EACRELGILFVADEVITGFGRTGPLFACEAEGVV--PDLMTVAKGL-TSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHG  319 (459)
T ss_pred             HHHHHcCCEEEEechhccCccCchhhhHhhcCCC--CCeEEechhh-ccCCcceeEEEEcHHHHHHHhcccccccccccc
Confidence            5899999999999999999999999999999998  9999999999 7887 44322     2211   1     23578


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||++||++|++++++|++++++++.++++++|++|+++|+++. ++|.|
T Consensus       320 ~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v  368 (459)
T PRK05965        320 YTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AHPLV  368 (459)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCE
Confidence            99999999999999999999999999999999999999999986 58865

>PRK07678 aminotransferase; Validated

Probab=99.97  E-value=3.3e-32  Score=212.80  Aligned_cols=113  Identities=30%  Similarity=0.455  Sum_probs=98.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-c------ccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-Q------AYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-~------~~~~~~   67 (119)
                      ++|++||++||+|||||||||+|++|++|++|+.  |||+||||+| +||+ |++.     ++.+. .      ...|++
T Consensus       241 ~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~--PDivt~gK~l-ggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~  317 (451)
T PRK07678        241 EICQKHGALLISDEVICGFGRTGKAFGFMNYGVK--PDIITMAKGI-TSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVN  317 (451)
T ss_pred             HHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCC--CCEEEeeccc-ccCCcceeEEEEcHHHHHHHhccCcccccccCC
Confidence            5899999999999999999999999999999998  9999999999 6775 5433     22221 1      135889


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||++||++|++++++|++++++++.++++++|++|++.|+++.++||.|
T Consensus       318 T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v  366 (451)
T PRK07678        318 TFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLV  366 (451)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            9999999999999999999999999999999999999999888888865

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.97  E-value=7e-32  Score=204.38  Aligned_cols=113  Identities=33%  Similarity=0.461  Sum_probs=98.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|+|||++||+|||||||||+|++|++++++++  |||+|+||+| +||+|++..     +.+ .....+.+||++||+
T Consensus       205 ~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~  281 (339)
T PF00202_consen  205 ELCREHGILLIADEVQTGFGRTGKFFASEHYGVD--PDIVTFGKGL-GGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPL  281 (339)
T ss_dssp             HHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSS--SSEEEEEGGG-GTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HH
T ss_pred             ccccccccceecccccccccccCCccceeccccc--Ccccccccch-hhhhhcccccccchhhccccccccccccccchH
Confidence            4899999999999999999999999999999999  9999999999 677665433     222 234458899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +|++++++|++++++++.+++++++++|+++|+++.++||.|
T Consensus       282 ~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i  323 (339)
T PF00202_consen  282 SCAAALATLEILEEEDLLERVRELGERLREGLRELAARYPLI  323 (339)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             hhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999999999999999999999999999999999999988765

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.97  E-value=5.6e-32  Score=211.13  Aligned_cols=112  Identities=28%  Similarity=0.379  Sum_probs=99.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~~~~~~~T~~~   71 (119)
                      ++|++||++||+|||||||||||++|+++++|+.  |||+||||+| +||+ |++.     ++.+.   .+..|++||+|
T Consensus       252 ~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~--PDivt~gK~l-g~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~g  328 (442)
T TIGR03372       252 ALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQ--PDILCLAKAL-GGGVMPIGATIATEAVFSVLFDNPFLHTTTFGG  328 (442)
T ss_pred             HHHHHcCCEEEEeecccCCCccccchhhhhcCCC--CCeeeehhhh-cCCcccceEEEecHHHHHhhhccCccccCCCCC
Confidence            4899999999999999999999999999999998  9999999999 6885 4432     23221   23467899999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ||++|++++++|++++++++.++++++|++|+++|+++.+++|.
T Consensus       329 np~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~  372 (442)
T TIGR03372       329 NPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPD  372 (442)
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999984

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.97  E-value=1.1e-31  Score=210.39  Aligned_cols=115  Identities=47%  Similarity=0.859  Sum_probs=102.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-cccccccceeeccCCCHHHHHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-FVPQQAYRVFNTWMGDPGKVLLL   79 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-~~~~~~~~~~~T~~~~p~~~a~a   79 (119)
                      ++|++||++||+|||||||||+|.+|+++++|++..|||+|+||+||+||+++... +....+..|++||++||++|+++
T Consensus       279 ~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~~~~~~~~~~~~~~~~~~T~~gnp~~~aaa  358 (464)
T TIGR00699       279 DITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDPAFRPNKPYRQFNTWMGDPSRALIL  358 (464)
T ss_pred             HHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCccccchhccCCCCcccccCCCCCHHHHHHH
Confidence            58999999999999999999999999999999976799999999996567765543 32223557899999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          80 KGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        80 ~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +++|++++++++.++++++|++|+++|+++.+++|.
T Consensus       359 ~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~  394 (464)
T TIGR00699       359 REIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPE  394 (464)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999988994

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=8.6e-32  Score=210.65  Aligned_cols=112  Identities=21%  Similarity=0.323  Sum_probs=97.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-c------ccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-Q------AYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-~------~~~~~~   67 (119)
                      ++|++||++||+|||||||||||++|+++++|++  |||+|+||+| +||| |++.     ++.+. .      ...|.+
T Consensus       250 ~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~--PDivt~gKgl-~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~  326 (453)
T PRK06943        250 ALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVW--PDFLCLSKGI-SGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSH  326 (453)
T ss_pred             HHHHHcCCEEEeechhhCCCCCcchhHHHhCCCC--CCeEeeehhh-ccCcccceEEEEcHHHHHhhcccCccCCccCCC
Confidence            5899999999999999999999999999999998  9999999999 6886 4432     22221 1      234789


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||+|||++|++++++|++++++++.++++++|++|+++|+++. ++|.|
T Consensus       327 T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v  374 (453)
T PRK06943        327 SYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-AHPQV  374 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCE
Confidence            9999999999999999999999999999999999999999985 47764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.97  E-value=8.6e-32  Score=210.93  Aligned_cols=112  Identities=29%  Similarity=0.410  Sum_probs=98.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~~~~~~~T~~~   71 (119)
                      ++|++||++||+|||||||||+|++|+++++|+.  |||+||||+| +||+ |++.     ++.+.   .+..|++||+|
T Consensus       259 ~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~--PDivt~gK~l-ggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~g  335 (459)
T PRK11522        259 KLCDEFGALLILDEVQTGMGRTGKMFACEHENVQ--PDILCLAKAL-GGGVMPIGATIATEEVFSVLFDNPFLHTTTFGG  335 (459)
T ss_pred             HHHHHcCCEEEeccceecCCccchhhhhhccCCC--CCEEEechhh-hCCCccceeEEEcHHHHHHhccCCcccCCCCCC
Confidence            4899999999999999999999999999999998  9999999999 6785 4432     22221   23467899999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ||++|++++++|++++++++.++++++|++|+++|+++.++||.
T Consensus       336 np~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~  379 (459)
T PRK11522        336 NPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPD  379 (459)
T ss_pred             CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999988984

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=1.4e-31  Score=210.02  Aligned_cols=112  Identities=20%  Similarity=0.332  Sum_probs=98.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc--------ccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ--------QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~--------~~~~~~   66 (119)
                      ++|++||++||+|||||||||||++|+++++|+.  |||+||||+| +||| |++.     ++.+.        ....|+
T Consensus       243 ~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~  319 (466)
T PRK07030        243 EACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIR--PDFLCLSKAL-TGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHS  319 (466)
T ss_pred             HHHHHcCCEEEEeehhhCcCccccchHHHhcCCC--CCEEeeehhc-cCCcccceEEEecHHHHHHHhcccccccccccC
Confidence            4899999999999999999999999999999998  9999999999 7897 4432     22211        123588


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||++||++|++++++|++++++++.++++++|++|++.|+++. ++|.|
T Consensus       320 ~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v  368 (466)
T PRK07030        320 HSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLA-DHPHV  368 (466)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCE
Confidence            99999999999999999999999999999999999999999985 68865

>PRK07481 hypothetical protein; Provisional

Probab=99.97  E-value=1e-31  Score=209.98  Aligned_cols=114  Identities=26%  Similarity=0.330  Sum_probs=99.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----cccc--------ccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQ--------QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~--------~~~~~~   66 (119)
                      ++|++||++||+|||||||||+|++|+++++|++  |||+|+||+| +||+ |++..     +.+.        ....|+
T Consensus       241 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gKgl-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~  317 (449)
T PRK07481        241 EVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK--PDIMCLAKGI-TSGYVPLGATMVNARIADAFEANADFGGAIMHG  317 (449)
T ss_pred             HHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC--CCEEEEeecc-cCCCcCceEEEEcHHHHHHHhccCccccccccC
Confidence            5899999999999999999999999999999998  9999999999 7886 44322     2211        123578


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +||++||++|++++++|++++++++.++++++|++|++.|+++.+++|.|.
T Consensus       318 ~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  368 (449)
T PRK07481        318 YTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVG  368 (449)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence            999999999999999999999999999999999999999999998898653

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.97  E-value=2.1e-31  Score=210.73  Aligned_cols=113  Identities=17%  Similarity=0.240  Sum_probs=97.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccccc--------cccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQQ--------AYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~~--------~~~~~   66 (119)
                      ++|++||++||+|||||||||+|++|+++++|++  |||+||||+| +||+ |++.     ++.+..        ...|+
T Consensus       288 ~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~--PDivtlgK~l-ggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~  364 (504)
T PLN02760        288 AVLKKYDILFIADEVICAFGRLGTMFGCDKYNIK--PDLVSLAKAL-SSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHG  364 (504)
T ss_pred             HHHHHcCCEEEecchhhCCcccchhhHHHhcCCC--CcEEEecccc-cCCccccceEeecHHHHhhhhcccccccCcccC
Confidence            5899999999999999999999999999999998  9999999999 6776 4432     222210        23578


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +||++||++|++++++|++++++++.+++++++++|++.|+++ +++|.|.
T Consensus       365 ~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~  414 (504)
T PLN02760        365 FTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF-SGSPIIG  414 (504)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hcCCCee
Confidence            9999999999999999999999999999999999999999998 6688653

>PRK12403 putative aminotransferase; Provisional

Probab=99.97  E-value=2.4e-31  Score=208.42  Aligned_cols=114  Identities=25%  Similarity=0.360  Sum_probs=98.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc-ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ-AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~-~~~~~~T~   69 (119)
                      ++|++||++||+|||||||||+|++|+++++|++  |||+|+||+| +||+ +++.     ++.+    .. ...|++||
T Consensus       250 ~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~--PDiv~~gK~l-ggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~  326 (460)
T PRK12403        250 RICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE--PDTLSIAKGL-TSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTY  326 (460)
T ss_pred             HHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC--CCeEEEcccc-cccccceEEEEECHHHHHHHhcCCCccccCCCC
Confidence            4899999999999999999999999999999998  9999999999 6887 4432     2221    11 22477899


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHhhhhcCCCCC
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQ-KTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~-~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ++||++|++++++|++++++++.++++ +++++|++.|+++.+++|.|.
T Consensus       327 ~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~  375 (460)
T PRK12403        327 SGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVG  375 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999999999999996 999999999999999998653

>PRK07480 putative aminotransferase; Validated

Probab=99.97  E-value=3.7e-31  Score=207.25  Aligned_cols=113  Identities=23%  Similarity=0.377  Sum_probs=97.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccc-ccc-----ccccc-----cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF-LKP-----EFVPQ-----QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~-~~~-----~~~~~-----~~~~~~~T~   69 (119)
                      +||++||++||+|||||||||||++|+++++|++  |||+||||+| +||+. ++.     ++.+.     ....|++||
T Consensus       247 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~  323 (456)
T PRK07480        247 RICRKYDILLVADEVICGFGRTGEWFGSQHFGIK--PDLMTIAKGL-TSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTY  323 (456)
T ss_pred             HHHHHcCCEEEEechhhCCCcCcchhhhhhcCCC--CCeeeeehhh-ccCCccceEEEEcHHHHHHHhcCCCCcccCCCC
Confidence            5899999999999999999999999999999998  9999999999 68874 332     22221     123578999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHH-HHHHHHHHHHHHhhhhcCCCCC
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRV-QKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~-~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ++||++|++++++|++++++++.+++ +++|++|+++|+++ ++||.|.
T Consensus       324 ~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~~~i~  371 (456)
T PRK07480        324 SGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADHPLVG  371 (456)
T ss_pred             CcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcCCCee
Confidence            99999999999999999999999999 69999999999996 5688654

>PRK06062 hypothetical protein; Provisional

Probab=99.97  E-value=3.7e-31  Score=206.96  Aligned_cols=113  Identities=27%  Similarity=0.411  Sum_probs=98.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~~~~~~~T~~~   71 (119)
                      ++|++||++||+|||||||||+|++|+++++|+.  |||+||||+| +||| |++.     ++.+.   ....+++||++
T Consensus       242 ~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~--PDi~t~gK~l-ggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~g  318 (451)
T PRK06062        242 ELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVV--PDLITFAKGV-NSGYVPLGGVAISEAIAATFADRPYPGGLTYSG  318 (451)
T ss_pred             HHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCC--CCeeeechhh-hcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCC
Confidence            4899999999999999999999999999999998  9999999999 6887 4432     23221   12347789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHH-HHHHHHHHhhhhcCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTG-DILLNVRLGLGQESNLQ  116 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g-~~l~~~L~~l~~~~p~i  116 (119)
                      ||++|++++++|++++++++.++++++| ++|++.|+++.+++|.|
T Consensus       319 npl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v  364 (451)
T PRK06062        319 HPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSV  364 (451)
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            9999999999999999999999999999 69999999999889864

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=4.7e-31  Score=207.36  Aligned_cols=113  Identities=22%  Similarity=0.383  Sum_probs=97.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-------cccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-------QAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-------~~~~~~~   67 (119)
                      ++|++||++||+|||||||||||++|+++++|+.  |||+|+||+| +||| |++.     ++.+.       ....|++
T Consensus       265 ~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~--PDiv~~gKgl-~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~  341 (472)
T PRK08742        265 ELCDAHGAFLIADEIATGFGRTGTLFACEQAGVM--PDLLCLSKGL-TGGFLPLSAVLATQQLYDAFLDDSRERAFLHSH  341 (472)
T ss_pred             HHHHHcCCEEEEechhhCCCCCccchHHHhcCCC--CCEEEEcccc-cCCCCCcceeeccHHHHHHhhccCccCccCcCC
Confidence            5899999999999999999999999999999998  9999999999 7887 4432     22211       1235789


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ||++||++|++++++|++++++++.++++++|++|++.++.+ ++||.|.
T Consensus       342 T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~~~i~  390 (472)
T PRK08742        342 SYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEHPHVA  390 (472)
T ss_pred             CCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcCCCee
Confidence            999999999999999999999999999999999999877775 5688653

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.97  E-value=6.7e-31  Score=205.91  Aligned_cols=113  Identities=23%  Similarity=0.361  Sum_probs=98.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----ccccc--ccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVPQQ--AYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~~~--~~~~~~T~~~~   72 (119)
                      ++|++||++||+|||||||||+|++|+++++|+.  |||+||||+| +||+ |++..     +....  ...+ +||++|
T Consensus       256 ~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~--PDiv~~gKgl-~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gn  331 (459)
T PRK06082        256 EICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIE--PDILCIGKGL-GGGLVPIAAMITKDKYNTAAQISLGH-YTHEKS  331 (459)
T ss_pred             HHHHHcCCEEEEechhhCCCccchhhHhHhhCCC--CCEEEecccc-cCCCCcceEEEEcHHHHhhccCCCCC-CCCCcC
Confidence            5899999999999999999999999999999998  9999999999 6775 54432     22211  1234 799999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |++|++++++|++++++++.++++++|++|+++|+++.++||.|.
T Consensus       332 pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  376 (459)
T PRK06082        332 PLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIG  376 (459)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence            999999999999999889999999999999999999999998763

>PRK06105 aminotransferase; Provisional

Probab=99.97  E-value=4.3e-31  Score=207.01  Aligned_cols=113  Identities=22%  Similarity=0.277  Sum_probs=97.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc----cccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ----AYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~----~~~~~   66 (119)
                      +||++||++||+|||||||||+|++|++++++++  |||+|+||+| +||+ |.+.     .+.+    ..    ...|.
T Consensus       246 ~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~--PDi~~~gK~l-ggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~  322 (460)
T PRK06105        246 AVLRKYDILLVADEVICGFGRTGNMFGCETFGIK--PDILVMSKQL-SSSYQPLSAVLMNEKVYDPIADESGKIGTFGHG  322 (460)
T ss_pred             HHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC--CCeeeeeccc-ccCcccceEEEEcHHHHHHHhcccccCcccccC
Confidence            4899999999999999999999999999999998  9999999999 5775 4432     2221    11    12378


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +||++||++|++++++|++++++++.++++++|++|+++|+++ +++|.|.
T Consensus       323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~  372 (460)
T PRK06105        323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVG  372 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeE
Confidence            8999999999999999999999999999999999999999999 7788763

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.97  E-value=1.5e-30  Score=202.96  Aligned_cols=114  Identities=25%  Similarity=0.324  Sum_probs=101.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccc-----cccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFV-----PQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~-----~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+|+||+| +||++++..+.     ......+.+||++||++
T Consensus       234 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l-~~G~Pigav~~~~~~~~~~~~~~~~T~~gnpla  310 (442)
T TIGR00709       234 EVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIE--PDFVVMSKAV-GGGLPLAVLLIAPEFDAWQPAGHTGTFRGNQLA  310 (442)
T ss_pred             HHHHHcCCEEEEeccccCCCCCCchhHHHHcCCC--CcEEEEcccc-cCCcccEEEEEchHHhccCCCcCCCCCCcCHHH
Confidence            4899999999999999999999999999999998  9999999999 56777654322     12234578999999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |++++++|++++++++.+++++++++|+++|+++.++||.|.
T Consensus       311 ~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~  352 (442)
T TIGR00709       311 MVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIG  352 (442)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            999999999999999999999999999999999999999764

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK07036 hypothetical protein; Provisional

Probab=99.97  E-value=2e-30  Score=203.56  Aligned_cols=112  Identities=27%  Similarity=0.376  Sum_probs=96.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhh-hcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-c-------ccce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHE-HFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-Q-------AYRV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~-~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-~-------~~~~   65 (119)
                      ++|++||++||+|||||||||+|++|+++ ++|++  |||+|+||+| +||| |++.     ++.+. .       ...+
T Consensus       248 ~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~--PDivt~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~  324 (466)
T PRK07036        248 EICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ--PDIITFAKGL-TSGYQPLGAVIISERLLDVISGPNAKGNVFTH  324 (466)
T ss_pred             HHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC--CCEEEEcccc-ccCccccEEEEEcHHHHHHHhcccCcCccccc
Confidence            58999999999999999999999999998 78998  9999999999 7887 4432     22221 0       1246


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++||++||++|++++++|+++++++++++++++|++|+++|+++ ++||.|
T Consensus       325 ~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v  374 (466)
T PRK07036        325 GFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-RELPLV  374 (466)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccCCCE
Confidence            78999999999999999999999999999999999999999987 468865

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=1.9e-30  Score=203.33  Aligned_cols=112  Identities=22%  Similarity=0.307  Sum_probs=97.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc--------ccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ--------QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~--------~~~~~~   66 (119)
                      ++|++||++||+|||||||||+|++|+++++|+.  |||+|+||+| +||+ |++.     ++.+.        ....|.
T Consensus       252 ~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~  328 (460)
T PRK06916        252 NLCTKYNVLFITDEVATGFGRTGKMFACEHENVT--PDIMTAGKGL-TGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHG  328 (460)
T ss_pred             HHHHHcCCEEEeechhhCCCcCchhhHHHhcCCC--CCeeeeehhh-hcCccccceeeecHHHHHHhhccccccCccccC
Confidence            4899999999999999999999999999999998  9999999999 6886 4432     22211        123578


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||++||++|++++++|+++++++++++++++|++|++.|+++.+ +|.|
T Consensus       329 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v  377 (460)
T PRK06916        329 HSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHV  377 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCe
Confidence            899999999999999999999999999999999999999999975 8865

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.97  E-value=2.5e-30  Score=201.79  Aligned_cols=113  Identities=24%  Similarity=0.369  Sum_probs=100.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|.+|+++++|+.  |||+|+||++ +||++++..     +.+ .....+.+||++||+
T Consensus       247 ~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~--PDiv~~gK~l-~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl  323 (443)
T PRK06058        247 EWCRENGVVFIADEVQTGFARTGAWFACEHEGIV--PDLITTAKGI-AGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPV  323 (443)
T ss_pred             HHHHHcCCEEEEeccccCCCcChhhhHHHhcCCC--CCEEEEcccc-cCCCccEEEEEcHHHHhhccCCCCCCCCCCCHH
Confidence            4899999999999999999999999999999998  9999999999 578776433     322 223457899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +|++++++|++++++++.+++++++++|+++|+++.+++|.|
T Consensus       324 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i  365 (443)
T PRK06058        324 ACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRI  365 (443)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence            999999999999999999999999999999999998888864

>PRK06917 hypothetical protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=202.16  Aligned_cols=113  Identities=22%  Similarity=0.337  Sum_probs=98.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc-ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ-AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~-~~~~~~T~   69 (119)
                      ++|++||++||+|||||||||+|++|++++++++  |||+||||+| +||+ |++.     ++.+    .. ...+++||
T Consensus       228 ~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~--PDi~~~gK~l-~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~  304 (447)
T PRK06917        228 EICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE--PDIMTLGKGL-GAGYTPIAATVVSDRVMEPILRGSRSIMSGHTL  304 (447)
T ss_pred             HHHHHcCCEEEEechhhCcCcccchhhHHhcCCC--CCEEEeeehh-ccCCcceEEEEEcHHHHHHHhccCcccccccCC
Confidence            4899999999999999999999999999999998  9999999999 6887 4432     2221    11 23467899


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++||++|++++++|++++++++.++++++|++|++.|+++.+++|.|
T Consensus       305 ~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i  351 (447)
T PRK06917        305 SANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTII  351 (447)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999999999999999999999999999989865

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.97  E-value=2.8e-30  Score=202.29  Aligned_cols=113  Identities=27%  Similarity=0.413  Sum_probs=99.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||+|++|+++++|++  |||+||||+| +||++++.     .+.+.....+++||++||++
T Consensus       250 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDiv~~gK~l-~gG~pi~av~~~~~i~~~~~~~~~~T~~g~p~~  326 (457)
T PRK05639        250 KLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVK--PDLIIFGKGV-ASGMGLSGVIGRKELMDLTSGSALLTPAANPVI  326 (457)
T ss_pred             HHHHHcCCEEEEechhhccCcCchHHHHHhcCCC--CCEEEechhh-cCCCcceeEEehHHHHhhcCCCcccCCCcCHHH
Confidence            4899999999999999999999999999999998  9999999999 67776543     23332233466899999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++++++|++++++++.++++++|++|+++|+++.+++|.+
T Consensus       327 ~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~  367 (457)
T PRK05639        327 SAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVI  367 (457)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            99999999999999999999999999999999999889865

>PRK06148 hypothetical protein; Provisional

Probab=99.96  E-value=4.8e-30  Score=215.79  Aligned_cols=114  Identities=26%  Similarity=0.394  Sum_probs=100.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cc-cceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QA-YRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~-~~~~~T~~~~   72 (119)
                      ++|++||++||+|||||||||+|. +|+++++|+.  |||+|+||+| +||+|++..     +++. .. ..+++||+||
T Consensus       812 ~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~--PDivt~gK~l-ggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gn  888 (1013)
T PRK06148        812 AMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVV--PDIVTMGKPI-GNGHPMGAVVTTREIADSFDNGMEYFNTFGGN  888 (1013)
T ss_pred             HHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCC--cceeeecccc-cCCcceEEEEEcHHHHhhccCCCccccCCCCC
Confidence            589999999999999999999997 8999999998  9999999999 678876543     3221 12 2477999999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |++|++++++|+++++++++++++++|++|+++|+++.++||.|.
T Consensus       889 pla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~  933 (1013)
T PRK06148        889 PVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIG  933 (1013)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence            999999999999999999999999999999999999999999763

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.96  E-value=4.3e-30  Score=200.60  Aligned_cols=115  Identities=28%  Similarity=0.433  Sum_probs=101.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccccc-----c-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP-----Q-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~-----~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+||||+++.+|++..+.+..     . .+..+++||++||+
T Consensus       253 ~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~--PDiv~~gK~l~~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl  330 (443)
T PRK08297        253 ELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVR--PDIVAFGKKTQVCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLV  330 (443)
T ss_pred             HHHHHcCCEEEEechhhccCccchHHHHHhcCCC--CCEEEecccccccceecchHHHHhhhhhccCccccCCCCCccHH
Confidence            4899999999999999999999999999999998  99999999997677776654221     1 13458899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +|++++++|++++++++.++++++|++|+++|+++.+++|.++
T Consensus       331 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~  373 (443)
T PRK08297        331 DMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVV  373 (443)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            9999999999999999999999999999999999998898764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.96  E-value=6.2e-30  Score=197.14  Aligned_cols=111  Identities=31%  Similarity=0.407  Sum_probs=98.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||+|++|++++++++  |||+||||+| +||++.+..     +....+..+++||++||++
T Consensus       207 ~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~--PDi~t~gK~l-g~G~p~~av~~~~~i~~~~~~~~~~T~~g~pl~  283 (395)
T PRK03715        207 ALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE--PDIMTLGKGI-GGGVPLAALLAKAEVAVFEAGDQGGTYNGNPLM  283 (395)
T ss_pred             HHHHHcCCEEEEeccccCCCCCcchhhHhhcCCC--Cceeeehhhh-hCCcceEEEEEccccccccCCCcCCCCCCCHHH
Confidence            4799999999999999999999999999999998  9999999999 577766433     3223345678999999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      |++++++|++++++++++++++++++|+++|+++.++++
T Consensus       284 ~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~  322 (395)
T PRK03715        284 TAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERG  322 (395)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999899999999999999999999987776

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.96  E-value=9.6e-30  Score=197.97  Aligned_cols=112  Identities=22%  Similarity=0.297  Sum_probs=96.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-cc-----ccc-----c-ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-EF-----VPQ-----Q-AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-~~-----~~~-----~-~~~~~~T   68 (119)
                      +||++||++||+|||||||||+|++|+++++|+.  |||+||||+| +||+++.+ .+     .+.     . ...|++|
T Consensus       235 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDiv~~gK~l-~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T  311 (429)
T PRK06173        235 ELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVV--PDIMCIGKAL-TGGYLTLSATITTEAIAQTICSGEAKCFMHGPT  311 (429)
T ss_pred             HHHHHcCCeEEecchhcCCCcCCcchHHHhcCCC--CCEEEeehhh-hCCccccceEEecHHHHHHHhcCCCCccccCCC
Confidence            4899999999999999999999999999999998  9999999999 78975532 22     111     1 1347789


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++||++|++++++|++++++++++++++++++|++.|+++ .++|.|
T Consensus       312 ~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~-~~~~~v  358 (429)
T PRK06173        312 FMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPA-AEFDSV  358 (429)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCCCe
Confidence            99999999999999999999899999999999999999987 457754

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.96  E-value=6.8e-30  Score=198.79  Aligned_cols=112  Identities=22%  Similarity=0.339  Sum_probs=96.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc------ccccc----c--ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP------EFVPQ----Q--AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~------~~~~~----~--~~~~~~T   68 (119)
                      ++|++||++||+|||||||||+|++|+++++|++  |||+||||+| +||+++.+      ++.+.    .  ...+++|
T Consensus       233 ~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~--PDi~t~gK~l-~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T  309 (428)
T PRK07986        233 KLCDREGILLIADEIATGFGRTGKLFACEHAGIA--PDILCLGKAL-TGGTMTLSATLTTREVAETISNGEAGCFMHGPT  309 (428)
T ss_pred             HHHHHcCCEEEEeccccCCccCCCeeeecccCCC--CCEEEechhh-hCCcccCcchhchHHHHHHhhcCCCCccccCCC
Confidence            4899999999999999999999999999999998  9999999999 78864422      22221    1  1247889


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++||++|++++++|++++++++++++++++++|++.|+++.+ +|.|
T Consensus       310 ~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~-~~~i  356 (428)
T PRK07986        310 FMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLRD-APMV  356 (428)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCCE
Confidence            9999999999999999999999999999999999999999864 7765

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.96  E-value=1e-29  Score=197.45  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=96.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc------ccccc-------cccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP------EFVPQ-------QAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~------~~~~~-------~~~~~~~   67 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+||||+| +||+++.+      .+.+.       ....|++
T Consensus       229 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDi~t~gK~l-~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~  305 (422)
T PRK05630        229 TLCDKHDILLIADEIATGFGRTGELFATLAAGVT--PDIMCVGKAL-TGGFMSFAATLCTDKVAQLISTPNGGGALMHGP  305 (422)
T ss_pred             HHHHHcCCEEEEecceeCCCcCchhhHHHhcCCC--CCeeeeechh-hcCccccceeeccHHHHHHHhccCCCCccccCC
Confidence            4899999999999999999999999999999998  9999999999 78875422      22211       1225789


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||++||++|++++++|++++++++++++++++++|++.|+++. ++|.|
T Consensus       306 T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~-~~~~v  353 (422)
T PRK05630        306 TFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLA-HLPGV  353 (422)
T ss_pred             CCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-cCCCe
Confidence            9999999999999999999988999999999999999999875 47765

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.96  E-value=1.1e-29  Score=197.43  Aligned_cols=113  Identities=16%  Similarity=0.212  Sum_probs=99.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~----~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||||| |+|.+|+++++|+.  |||+||||+| +||+|++..     +.+    ..+..+++||++
T Consensus       228 ~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~--PDivt~gK~l-ggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~g  303 (428)
T PRK12389        228 ELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVE--PDLTALGKII-GGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAG  303 (428)
T ss_pred             HHHHHcCCEEEEEcccccc-ccCcchhhHHhCCC--CCeeeechhh-cCCCceeEEeEHHHHHhhhccCCCcccccCCcc
Confidence            4899999999999999999 99988899999998  9999999999 677776432     222    123468899999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ||++|++++++|++++++++++++++++++|+++|+++.+++|.+.
T Consensus       304 npl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~  349 (428)
T PRK12389        304 NPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITI  349 (428)
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            9999999999999999889999999999999999999988888653

>PRK06149 hypothetical protein; Provisional

Probab=99.96  E-value=1.6e-29  Score=212.04  Aligned_cols=113  Identities=27%  Similarity=0.369  Sum_probs=99.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEEchhhccCccccccc-----ccccc--ccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQQ--AYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~~--~~~~~~T~~~~   72 (119)
                      ++|++||++||+|||||||||+|+ +|+++++|+.  |||+||||+| +||++++..     +.+..  ...+++||++|
T Consensus       772 ~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~--PDivt~gK~l-g~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gn  848 (972)
T PRK06149        772 AAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVV--PDIITMAKGM-GNGHPLGAVITRREIAEALEAEGYFFSSTGGS  848 (972)
T ss_pred             HHHHHcCCEEEEEeehhcCCccCccchhhhhcCCC--CCEEEecccc-cCCeeeEEEEEcHHHHhhhccCCcccCCCCCC
Confidence            589999999999999999999998 6799999998  9999999999 677776433     32211  23567889999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++|++++++|++++++++.++++++|++|+++|+++.++||.|
T Consensus       849 P~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i  892 (972)
T PRK06149        849 PVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLI  892 (972)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            99999999999999999999999999999999999999999975

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.96  E-value=2.7e-29  Score=196.11  Aligned_cols=112  Identities=23%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----cc----cccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----QQ----AYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~~----~~~~~   66 (119)
                      ++|++||++||+|||||||||+|++|+++++|++  |||+||||+| +||+ |++.     ++.+    ..    ...+.
T Consensus       243 ~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~--PDivt~gK~l-~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~  319 (442)
T PRK13360        243 EICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT--PDLLTCAKGL-TNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHG  319 (442)
T ss_pred             HHHHHcCCEEEEechhhCCCCCccchhhhhcCCC--Cceeeeeecc-ccCccceEEEEEcHHHHHHhhcCCccccccccC
Confidence            5899999999999999999999999999999998  9999999999 6674 4432     2221    11    12467


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||++||++|++++++|++++++++.+++++++++|++.|+++.+ +|.|
T Consensus       320 ~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v  368 (442)
T PRK13360        320 YTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRD-APHV  368 (442)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-CCCe
Confidence            899999999999999999999889999999999999999998854 7754

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.96  E-value=3.2e-29  Score=206.54  Aligned_cols=114  Identities=14%  Similarity=0.083  Sum_probs=91.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc------ccccc-------cccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP------EFVPQ-------QAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~------~~~~~-------~~~~~~~   67 (119)
                      ++|++||++||+|||+|||||||++|+++++|+.  |||+|+||+| +|||.|.+      ++.+.       ....|++
T Consensus       613 ~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~--PDIi~~gKgL-tgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~  689 (817)
T PLN02974        613 QVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK--PDIACYAKLL-TGGLVPLAATLATEEVFEAFRGPSKLDALLHGH  689 (817)
T ss_pred             HHHHHhCCEEEEeecccCCCcccchhhHHhcCCC--CCEEeecccc-cCCCCccEEEEEcHHHHHhhccccccCCcccCC
Confidence            5899999999999999999999999999999998  9999999999 89975432      22211       1235889


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENL----LDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~----~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ||++||++|++++++|++++++++    .++.+++++++++.|++..++||.|.
T Consensus       690 Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~  743 (817)
T PLN02974        690 SYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVE  743 (817)
T ss_pred             CCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence            999999999999999999998754    44456666667777744445688764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.96  E-value=7.4e-29  Score=193.75  Aligned_cols=112  Identities=24%  Similarity=0.300  Sum_probs=95.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc---c-----cccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ---Q-----AYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~---~-----~~~~~   66 (119)
                      ++|++||++||+|||||||||+|++|++++++++  |||+|+||+| +||+ |++.     ++.+.   .     ...+.
T Consensus       246 ~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~--PDi~~~gK~l-~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~  322 (445)
T PRK09221        246 EICDKHGILLIFDEVITGFGRLGAAFAAERFGVT--PDIITFAKGL-TNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHG  322 (445)
T ss_pred             HHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC--CCEEEecccc-ccCcccceeeEEcHHHHHhhccCcccccccccc
Confidence            4899999999999999999999999999999998  9999999999 6675 3332     22211   1     12467


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||++||++|++++++|++++++++.+++++++++|++.|+++. ++|.|
T Consensus       323 ~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v  371 (445)
T PRK09221        323 YTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLK-GLPHV  371 (445)
T ss_pred             cCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCE
Confidence            89999999999999999999988999999999999999999984 47754

>KOG1401|consensus

Probab=99.95  E-value=1.1e-28  Score=187.39  Aligned_cols=115  Identities=26%  Similarity=0.321  Sum_probs=102.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cc----cccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FV----PQQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~----~~~~~~~~~T~~~   71 (119)
                      ++|+++|++||+|||||||||+|.+|+++++++.  |||.|++|.| +||+|+++.     ++    ...+.+|++||+|
T Consensus       234 k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~--PDI~t~aK~L-~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~g  310 (433)
T KOG1401|consen  234 KECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVT--PDITTVAKPL-GGGLPIGATGVRDKVAEMISPGDHLYHGGTFSG  310 (433)
T ss_pred             HHHhhcCceEEeehhhhCccccchHHHHHHhCcC--Ccceeehhhc-cCCceeEEEeehHHHHhhcCCCCccccCcccCC
Confidence            3799999999999999999999999999999998  9999999999 788877543     22    2234567999999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS  118 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~  118 (119)
                      ||++|+++..+|+.+.++++++++.+.++.|+++|.+...++|+.++
T Consensus       311 npLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~  357 (433)
T KOG1401|consen  311 NPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSIC  357 (433)
T ss_pred             ChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCcee
Confidence            99999999999999999999999999999999999999888887553

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=2.8e-28  Score=190.50  Aligned_cols=113  Identities=26%  Similarity=0.391  Sum_probs=98.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+|+||++ +||++++.     .+.+. ....+.+||++||+
T Consensus       235 ~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~--pDi~t~gK~l-~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl  311 (445)
T PRK08593        235 KFCREHGILFAVDDIQQGLGRTGKWSSISHFNIT--PDLMSFGKSL-AGGMPMSAIVGRKEIMESLEAPAHLFTTGANPV  311 (445)
T ss_pred             HHHHHcCCEEEEechhhCCCcCchHHHHHhcCCC--CCEeeecccc-cCCcccEEEEEcHHHHhhhccCCCCCCCCCCHH
Confidence            4899999999999999999999999999999998  9999999999 57776543     22221 23356679999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +|++++++|++++++++.+++++++++|++.|+++.+++|.|
T Consensus       312 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v  353 (445)
T PRK08593        312 SCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFV  353 (445)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            999999999999999999999999999999999999889865

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.95  E-value=4.7e-28  Score=188.53  Aligned_cols=114  Identities=30%  Similarity=0.436  Sum_probs=99.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccc---cc---ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEF---VP---QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~---~~---~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|.+|+++++|+.  |||+|+||++..+|++..+.+   ..   ..+..+++||++||+
T Consensus       246 ~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~--PDi~~~gK~~~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl  323 (431)
T TIGR03251       246 ALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQ--PDIVAFGKKTQVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLV  323 (431)
T ss_pred             HHHHHcCCEEEEecchhccCccchHHHHHhcCCC--CCEEEecccCccceEEecchHHHhhhhcccCccccCCCCCCCHH
Confidence            4899999999999999999999999999999998  999999999866677766542   11   113457899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +|++++++|++++++++.+++++++++|+++|+++.+++|.+
T Consensus       324 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~  365 (431)
T TIGR03251       324 DMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHL  365 (431)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999988999999999999999999998888833

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK06541 hypothetical protein; Provisional

Probab=99.95  E-value=5.6e-28  Score=189.49  Aligned_cols=112  Identities=23%  Similarity=0.257  Sum_probs=96.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----cccc----c-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVP----Q-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~----~-~~~~~~~T~   69 (119)
                      ++|++||++||+|||||||||+|++|+++++|+.  |||+||||++ +||+ +++.     ++.+    . ....+.+||
T Consensus       249 ~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~--PDivt~gK~l-~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~  325 (460)
T PRK06541        249 EICDRYDVLLVSDEVICAFGRLGEMFGCERFGYV--PDIITCAKGI-TSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTF  325 (460)
T ss_pred             HHHHHcCCEEEEechhhCCCcCchhhhhhhcCCC--CCEEEecccc-cCCccceeEEEEcHHHHHHhhcCCCccccCCCC
Confidence            4899999999999999999999999999999998  9999999999 5787 4432     2221    1 122466899


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++||++|++++++|++++++++++++++++++|+++|+++.+ +|.|
T Consensus       326 ~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v  371 (460)
T PRK06541        326 GGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIV  371 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCe
Confidence            999999999999999999889999999999999999999876 8764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.95  E-value=3.5e-28  Score=191.18  Aligned_cols=109  Identities=22%  Similarity=0.255  Sum_probs=96.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~   71 (119)
                      +||++||++||+||||||| |+|.+|+++++|+.  |||+||||+| +||+|++.     ++++    ..+.++++||++
T Consensus       274 ~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~--PDi~t~gK~l-ggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~g  349 (474)
T PLN02482        274 EITKENGALLVFDEVMTGF-RIAYGGAQEYFGIT--PDLTTLGKVI-GGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSG  349 (474)
T ss_pred             HHHHHcCCEEEEeccccCe-ecCcchHhHHhCCC--CCEEEecchh-hCCCceEEEEEcHHHHHhhccCCCcccccCcch
Confidence            5899999999999999999 99999999999998  9999999999 57777643     2222    124567899999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES  113 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~  113 (119)
                      ||++|++++++|++++++++++++++++++|+++|+++..++
T Consensus       350 npl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~  391 (474)
T PLN02482        350 NPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKA  391 (474)
T ss_pred             hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999988999999999999999999998774

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.95  E-value=1.3e-27  Score=186.29  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=93.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||||| |+|.+|++++++++  |||+||||+| +||++.+.     ++.+    ....++++||++
T Consensus       229 ~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~--PDi~~~gK~l-ggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g  304 (433)
T PRK00615        229 QTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVK--PDITVYGKIL-GGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSG  304 (433)
T ss_pred             HHHHHcCCEEEEEcccccc-cccHhHHHHhcCCC--CCeEEEcccc-cCCcceeeeeecHHHHhhhcCCCCcccCCCCcc
Confidence            4899999999999999999 99999999999998  9999999999 56665532     2322    223457789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhc
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE  112 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~  112 (119)
                      ||++|++++++|++++++++++++++++++|+++|+++.++
T Consensus       305 ~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~  345 (433)
T PRK00615        305 NPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRS  345 (433)
T ss_pred             cHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998899999999999999999998766

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=1.3e-27  Score=186.59  Aligned_cols=112  Identities=31%  Similarity=0.433  Sum_probs=98.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  ||++||||++ +||++.+.     .+.......+.+||++||++
T Consensus       249 ~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~--pDivt~~K~l-~~G~p~gav~~~~~i~~~~~~~~~~T~~g~p~~  325 (441)
T PRK05769        249 KLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVE--PDIITLAKAI-AGGLPLGAVIGRAELMFLPPGSHANTFGGNPVA  325 (441)
T ss_pred             HHHHHcCCEEEEechhhCCCcccceehhhccCCC--CCEEEEcccc-cCCcccEEEEEehhhhhcCCCCCCCCCCcCHHH
Confidence            4799999999999999999999999999999998  9999999999 46766542     23333334678999999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++++++|+++++ ++.+++++++++|++.|+++.+++|.+
T Consensus       326 ~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~  365 (441)
T PRK05769        326 AAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFI  365 (441)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            9999999999998 999999999999999999999889865

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.94  E-value=3.4e-27  Score=183.34  Aligned_cols=114  Identities=19%  Similarity=0.269  Sum_probs=97.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+||||+|+++|++++.     .+....+..+.+||++||++
T Consensus       226 ~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~--PDi~t~~K~l~~~G~pigav~~~~~i~~~~~~~~~~T~~gnp~~  303 (425)
T PRK09264        226 KLCRKHDILLIVDDIQAGCGRTGTFFSFERAGIT--PDIVTLSKSISGYGLPMALVLIKPELDVWKPGEHNGTFRGNNLA  303 (425)
T ss_pred             HHHHHcCcEEEEechhhCCccccHHHHHhhcCCC--CCEEEeccccCCCccceEEEEEchhhhccCCCccCCCCCCCHHH
Confidence            4899999999999999999999999999999998  9999999999543766542     23222334577899999999


Q ss_pred             HHHHHHHH-HHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          76 VLLLKGII-DTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        76 ~a~a~a~l-~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++++++| ++++++++.+++++++++|+++|+++.+++|.+
T Consensus       304 ~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~  345 (425)
T PRK09264        304 FVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGL  345 (425)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999 677777899999999999999999998888854

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.94  E-value=3.3e-27  Score=182.85  Aligned_cols=113  Identities=21%  Similarity=0.262  Sum_probs=97.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+|+||+|++||++++..     +....+..+.+||++||++
T Consensus       222 ~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~--PDi~~~~K~lg~~G~pigav~~~~~~~~~~~~~~~~T~~gnpl~  299 (412)
T TIGR02407       222 KLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIE--PDIVCLSKSISGYGLPLALTLIKPELDVWKPGEHNGTFRGNNLA  299 (412)
T ss_pred             HHHHHcCCEEEEechhhCCCccchhHHhcccCCC--CCEEEechhccCCccceeEEEEchhhhccCCCccCCCCCccHHH
Confidence            4899999999999999999999999999999998  99999999995337765432     2112234678899999999


Q ss_pred             HHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          76 VLLLKGIIDT-IHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        76 ~a~a~a~l~~-i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      |+++.++|++ ++++++.+++++++++|+++|+++.+++|.
T Consensus       300 ~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~  340 (412)
T TIGR02407       300 FVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPE  340 (412)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999995 878889999999999999999999988884

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.94  E-value=4.4e-27  Score=182.93  Aligned_cols=111  Identities=23%  Similarity=0.318  Sum_probs=95.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc------cccc------cccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE------FVPQ------QAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~------~~~~------~~~~~~~T   68 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+|+||++ +||+++.+.      +.+.      ....+.+|
T Consensus       236 ~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~--pDi~~~gK~l-~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T  312 (427)
T TIGR00508       236 ALCKQYDILLIADEIATGFGRTGKLFACEHAGVV--PDILCVGKAL-TGGYMTLSATVTTDKVAQTISSGEAGCFMHGPT  312 (427)
T ss_pred             HHHHHcCCEEEEeccccCCCcCCccchhhhcCCC--CCEEEechhh-hcCcccceEEEEcHHHHHHHhcCCCCccccCCC
Confidence            4899999999999999999999999999999998  9999999999 789754322      2111      11236789


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      |++||++|++++++|++++++++++++++++++|+++|+++.. +|.
T Consensus       313 ~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-~~~  358 (427)
T TIGR00508       313 FMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLRK-NPV  358 (427)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-CCC
Confidence            9999999999999999999889999999999999999999854 664

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.94  E-value=4.7e-27  Score=182.68  Aligned_cols=114  Identities=26%  Similarity=0.346  Sum_probs=99.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|++|+++++++.  |||+||||++ ++|++++..     +.+ .....+++||++||+
T Consensus       235 ~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~--pDi~t~sK~l-g~G~pigav~~~~~i~~~~~~~~~~~T~~~np~  311 (433)
T PRK08117        235 EICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVV--PDIMTIAKGI-ASGLPLSAVVASKELMEQWPLGSHGTTFGGNPV  311 (433)
T ss_pred             HHHHHcCCEEEEecchhccCccccchhHhhcCCC--CCEeehhhhc-cCCCcceeEEEcHHHHhhccCCCCCCCCCcCHH
Confidence            4899999999999999999999999988999998  9999999999 577766432     222 223457789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +|++++++|++++++++++++++++++++++|+++.+++|.+.
T Consensus       312 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~  354 (433)
T PRK08117        312 ACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIG  354 (433)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence            9999999999998889999999999999999999988888543

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.94  E-value=4.6e-27  Score=182.76  Aligned_cols=114  Identities=27%  Similarity=0.401  Sum_probs=100.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|.+|+++++++.  |||+||||+| +||++++.     ++.+ ..+..+.+||++||+
T Consensus       226 ~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~--pDi~tlsK~l-~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl  302 (425)
T PRK07495        226 ELCDQHGILLIADEVQTGFARTGKLFAMEHHEVA--ADLTTMAKGL-AGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPL  302 (425)
T ss_pred             HHHHHcCCEEEEechhhcCCcCCCceeecccCCC--CCEEeehhhh-cCCccceEEEEcHHHHhccCCCCcCCCCCCCHH
Confidence            4899999999999999999999999899999998  9999999999 67876543     2322 223457789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +|++++++|++++++++.+++++++++|+++|+++.+++|.+.
T Consensus       303 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~  345 (425)
T PRK07495        303 GIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIA  345 (425)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence            9999999999999999999999999999999999998898653

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.94  E-value=7.2e-27  Score=179.88  Aligned_cols=113  Identities=25%  Similarity=0.403  Sum_probs=97.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|++++++++++.  ||++|+||++ +||++++.     .+.+. ....+.+||++||+
T Consensus       207 ~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~--pDi~t~~K~l-ggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~  283 (397)
T TIGR03246       207 ELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT--PDILTSAKAL-GGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPL  283 (397)
T ss_pred             HHHHHcCCEEEEechhhcCCccccchhhhhcCCC--CCEEEeehhh-hCCcceeEEEEcHHHHHhccCCCcCCCCCCCHH
Confidence            4899999999999999999999999999999998  9999999999 57877653     23222 23346789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++++++++|++++++++.+++++++++|+++|+++..++|.+
T Consensus       284 ~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~  325 (397)
T TIGR03246       284 ACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVF  325 (397)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            999999999999888999999999999999999988777643

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.94  E-value=9.5e-27  Score=180.70  Aligned_cols=114  Identities=25%  Similarity=0.392  Sum_probs=100.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||+|||||+|++|+++++++.  |||+||||+| +||++++..     +.+ .....+.+||++||+
T Consensus       226 ~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~--pDi~t~gK~l-~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl  302 (421)
T PRK09792        226 RLCDEHGIVMIADEVQSGFARTGKLFAMDHYADK--PDLMTMAKSL-AGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPL  302 (421)
T ss_pred             HHHHHcCCEEEEeccccCCCCCCchhHHHhcCCC--CcEEEeehhh-cCCCceEEEEEcHHHHhccCCCCcCCCCCCCHH
Confidence            4899999999999999999999999999999987  9999999999 677776532     222 223457899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +|+++++++++++++++.++++++++++++.|+++.+++|.+.
T Consensus       303 ~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~  345 (421)
T PRK09792        303 AVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIA  345 (421)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999889999999999999999999999999754

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.94  E-value=1.3e-26  Score=177.20  Aligned_cols=94  Identities=27%  Similarity=0.374  Sum_probs=83.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccccc--cccceeeccCCCHHHHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQ--QAYRVFNTWMGDPGKVLL   78 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~~--~~~~~~~T~~~~p~~~a~   78 (119)
                      ++|++||++||+||||||+ |+|++|+++++++.  |||+|+||+| +||+|++..+...  .+..|++||++||++|++
T Consensus       190 ~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~--PDiv~~gK~l-ggG~P~~a~~~~~~~~~~~~~~T~~gnp~~~aa  265 (364)
T PRK04013        190 DLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVE--PDIVTMGKGI-GNGVPVSLTLTNFDVERGKHGSTFGGNPLACKA  265 (364)
T ss_pred             HHHHHcCCEEEEechhhcC-CCCchhHHHhcCCC--CCEEEecccc-cCCceeEEEEecccccCCCcCCCCCcCHHHHHH
Confidence            4799999999999999999 99999999999998  9999999999 6778776554331  235688999999999999


Q ss_pred             HHHHHHHHhhhcHHHHHHHH
Q psy4800          79 LKGIIDTIHNENLLDRVQKT   98 (119)
Q Consensus        79 a~a~l~~i~~~~~~~~~~~~   98 (119)
                      ++++|++++++++.+++++.
T Consensus       266 a~a~l~~i~~~~l~~~~~~~  285 (364)
T PRK04013        266 VAVTLRILRRERLVEKAGEK  285 (364)
T ss_pred             HHHHHHHHHhccHHHHHHHH
Confidence            99999999999999998775

>KOG1403|consensus

Probab=99.94  E-value=1.4e-26  Score=171.42  Aligned_cols=113  Identities=27%  Similarity=0.414  Sum_probs=100.0

Q ss_pred             hhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc---ccccceeeccCCCH
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP---QQAYRVFNTWMGDP   73 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~---~~~~~~~~T~~~~p   73 (119)
                      .+.+|-++|+||||+||||.|+ .|++|.|+..  |||+|+||.| ++|.|++..     +.+   .....+|.||+|||
T Consensus       239 Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fi--PDIVtmgKpm-GNGhPVa~VattkeIA~Af~atgv~YFNTyGGnP  315 (452)
T KOG1403|consen  239 VRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFI--PDIVTMGKPM-GNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNP  315 (452)
T ss_pred             HhcCCCeEEeehhhhcccccchhhhhhhhhccc--cchheecccC-CCCCeeeEEeccHHHHHHhccccceehhccCCCc
Confidence            4568999999999999999998 7999999988  9999999999 688887543     332   12346789999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS  118 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~  118 (119)
                      ++||+++++|+++++|+++++.+++|++|...|++++.+|++|-+
T Consensus       316 VsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD  360 (452)
T KOG1403|consen  316 VSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGD  360 (452)
T ss_pred             hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceec
Confidence            999999999999999999999999999999999999999998753

>PLN00144 acetylornithine transaminase

Probab=99.94  E-value=2.7e-26  Score=176.24  Aligned_cols=114  Identities=26%  Similarity=0.364  Sum_probs=99.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||+|||||+|.+++++++++.  |||+||||+| ++|++++..     +.+ .....+.+||++||+
T Consensus       195 ~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~--PDi~t~sK~l-~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl  271 (382)
T PLN00144        195 ALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVE--PDIMTLAKPL-AGGLPIGAVLVTEKVASAINPGDHGSTFAGGPL  271 (382)
T ss_pred             HHHHHcCCEEEEechhhCCCccchHhhhhhcCCC--CCEEEecccc-cCCcceEEEEEcHHHHhccCCCCCCCCCCCCHH
Confidence            5899999999999999999999999898899998  9999999999 677765432     222 123457789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +|+++.++|++++++++.++++++++++++.|+++.+++|.+.
T Consensus       272 ~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~  314 (382)
T PLN00144        272 VCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVK  314 (382)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence            9999999999999999999999999999999999888888764

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=3.4e-26  Score=177.57  Aligned_cols=113  Identities=28%  Similarity=0.384  Sum_probs=98.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||+|||||+|++|+++++++.  ||++|+||++ +||++++.     .+.+. ....+++||++||+
T Consensus       226 ~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~--pDiv~~sK~l-~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~  302 (421)
T PRK06777        226 TLCDEHGILLIADEVQTGFARTGKLFAMEYYDVK--PDLITMAKSL-GGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPL  302 (421)
T ss_pred             HHHHHcCCEEEEechhhCCccCCchhhhhhcCCC--CCEEeeehhh-cCCCceEEEEEcHHHHhccCCCCCCCCCCcCHH
Confidence            4899999999999999999999999999999998  9999999999 57876543     23222 23457789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +|++++++|++++++++.+++++++++|+++|+++.+++|.+
T Consensus       303 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i  344 (421)
T PRK06777        303 AVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAI  344 (421)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999999999999989999999999999999999998888865

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.93  E-value=2.6e-26  Score=178.06  Aligned_cols=112  Identities=25%  Similarity=0.351  Sum_probs=95.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cccc-----ccccc-------cccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKP-----EFVPQ-------QAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~-----~~~~~-------~~~~~~~   67 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+++||++ +||+ +.+.     ++.+.       ....+.+
T Consensus       228 ~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~--pDi~~~~K~l-~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~  304 (423)
T PRK05964        228 RICDRHGVLLIFDEIATGFGRTGTLFACEQAGVS--PDIMCLSKGL-TGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSP  304 (423)
T ss_pred             HHHHHcCCEEEEechhhCCCcCcchhHHHhcCCC--CCeeeeehhh-hcCcccceEEEEcHHHHHhhhcCCcccccccCC
Confidence            4899999999999999999999999999999998  9999999999 6674 4432     22221       1224678


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||++||++|++++++|++++++++.++++++++++++.|+++. ++|.|
T Consensus       305 T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~-~~~~i  352 (423)
T PRK05964        305 SYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFR-DLPGV  352 (423)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc-cCCCe
Confidence            9999999999999999999988999999999999999999884 47754

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.93  E-value=8.7e-26  Score=174.84  Aligned_cols=113  Identities=22%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|.+|+++++++.  ||++||||++ +||++++..     +.+. ....+.+||++||+
T Consensus       215 ~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~--pdi~t~~K~l-~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~  291 (408)
T PRK04612        215 ALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVT--PDIVTLAKAL-GGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPL  291 (408)
T ss_pred             HHHHHcCCEEEEeccccCCCcCCchhhhhhcCCC--CCEEEEcchh-cCCCceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence            4899999999999999999999998888888887  9999999999 577765433     2221 23356789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +|++++++|++++++++.+++++++++|+++|+++.+++|.|
T Consensus       292 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i  333 (408)
T PRK04612        292 AAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVF  333 (408)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            999999999999999999999999999999999999888765

>PRK07046 aminotransferase; Validated

Probab=99.93  E-value=6.2e-26  Score=177.70  Aligned_cols=111  Identities=17%  Similarity=0.159  Sum_probs=94.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc----------cccce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ----------QAYRV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~----------~~~~~   65 (119)
                      ++|++||++||+|||+| | |+|.+++.+++|++  |||+||||+| +||+|++.     ++++.          ....+
T Consensus       246 ~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~--PDi~t~gK~l-ggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~  320 (453)
T PRK07046        246 ELTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLE--PDFLVVGKPI-AGGVPCAVYGFSAELAERAQAAKASAPPGHSGI  320 (453)
T ss_pred             HHHHHhCCEEEEEcccc-C-ccCCcchhHHhCCC--ccceeehhhh-cCCCcceeeeehHHHHHHHhhccccCCCCCcee
Confidence            58999999999999999 5 67777777889998  9999999999 67887653     22211          11247


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      .+||++||++|++++++|+++++++++++++++|++|+++|+++.++++.+
T Consensus       321 ~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~  371 (453)
T PRK07046        321 GTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLP  371 (453)
T ss_pred             CCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            789999999999999999999998999999999999999999998888754

>KOG1405|consensus

Probab=99.93  E-value=4.5e-26  Score=171.33  Aligned_cols=118  Identities=50%  Similarity=0.902  Sum_probs=112.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccccccccceeeccCCCHHHHHHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLLK   80 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~~~~~~~~~T~~~~p~~~a~a~   80 (119)
                      ++|+||++.+|+||||||-|-||++|+++|++++.+||++||||-+.+|||.-...++...+..++.||-|+|.-+....
T Consensus       299 di~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gGffh~~~frpn~pYrifNTWmGdP~k~lll~  378 (484)
T KOG1405|consen  299 DITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGFFHDEEFRPNEPYRIFNTWMGDPSKNLLLE  378 (484)
T ss_pred             HHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCccccCcccCCCchHHHhhhhcCChHHHHHHH
Confidence            37999999999999999999999999999999999999999999998899988999999889999999999999999999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4800          81 GIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQPS  118 (119)
Q Consensus        81 a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~~  118 (119)
                      ++++.|+++++.+++...|++|..+|.+|+++||..++
T Consensus       379 ~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~  416 (484)
T KOG1405|consen  379 EVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKIN  416 (484)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence            99999999999999999999999999999999998764

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.93  E-value=1.6e-25  Score=173.61  Aligned_cols=113  Identities=24%  Similarity=0.340  Sum_probs=99.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||++||||+|++++++++++.  |||+||||++ ++|++++..     +.+. ....+.+||++||+
T Consensus       225 ~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~--pDi~~lsK~l-~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl  301 (420)
T TIGR00700       225 DWCREHGIVFIADEVQTGFARTGAMFACEHEGPE--PDLITTAKSL-ADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPL  301 (420)
T ss_pred             HHHHHcCCEEEEEecccCCcccchhHHHhhcCCC--CCEEEeeccc-cCCcceEEEEecHHHHhhcCCCCcCCCCCcCHH
Confidence            5899999999999999999999999999999998  9999999999 578776432     3222 23457899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +|++++++|++++++++.+++++++++++++|+++.+++|.+
T Consensus       302 ~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~  343 (420)
T TIGR00700       302 ACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRI  343 (420)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence            999999999999999999999999999999999998888864

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.92  E-value=4.4e-25  Score=170.38  Aligned_cols=113  Identities=22%  Similarity=0.349  Sum_probs=97.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||++ +||++++..     +.+. ....+.+||++||+
T Consensus       211 ~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~--pDi~t~sK~l-~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl  287 (406)
T PRK12381        211 ELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT--PDVLTTAKAL-GGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPL  287 (406)
T ss_pred             HHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCC--CCEEEehhhh-hCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHH
Confidence            4899999999999999999999998888899998  9999999999 578776432     3322 23356789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +++++.++|++++++++++++++++++|++.|+++..++|.+
T Consensus       288 ~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~  329 (406)
T PRK12381        288 ASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYGLF  329 (406)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence            999999999999888999999999999999999997777643

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.92  E-value=5.6e-25  Score=171.87  Aligned_cols=113  Identities=31%  Similarity=0.473  Sum_probs=97.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|++++++++++.  ||++||||+++ +|++++.     .+.+. ....+.+|+++||+
T Consensus       232 ~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~--pDiitlsK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~  308 (443)
T PRK08360        232 KILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVE--PDIITLGKPLG-GGLPISATIGRAEIMDSLPPLAHAFTLSGNPV  308 (443)
T ss_pred             HHHHHcCCEEEEeccccCCCcCccchhhhhcCCC--CCEEEeccccc-CCceeEEEEEcHHHHhhhcCCCCCCCCCcCHH
Confidence            4899999999999999999999998888889998  99999999994 6665532     22222 23346789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++++++++|+.++++++.+++++++++|++.|+++.+++|.+
T Consensus       309 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v  350 (443)
T PRK08360        309 ASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELI  350 (443)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999999999999988999999999999999999998888855

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.92  E-value=6e-25  Score=171.13  Aligned_cols=112  Identities=17%  Similarity=0.233  Sum_probs=92.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc--------ccc-cee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ--------QAY-RVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~--------~~~-~~~   66 (119)
                      ++|++||++||+|||||||++++ +++.+++++.  |||+|+||+| +||++.+.     .+.+.        .+. .+.
T Consensus       211 ~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~--PDi~t~gK~l-ggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~  286 (431)
T PRK06209        211 RLCHENGALFILDEMITGFRWHM-RGAQKLYGIV--PDLSCFGKAL-GNGFAVSALAGKREYMELGGLEHTDRERVFLLS  286 (431)
T ss_pred             HHHHHcCCEEEEEcccccCCcCc-chhhHHhCCC--cceeeehhhh-cCCcccEEEEEHHHHHhhhcccccCCCCceeec
Confidence            48999999999999999998753 4455568998  9999999999 56776542     22221        122 367


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||++||++|++++++|++++++++++++++++++|++.|+++.+++|.+
T Consensus       287 ~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~  336 (431)
T PRK06209        287 TTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQ  336 (431)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            89999999999999999999999999999999999999999988878754

>PLN02624 ornithine-delta-aminotransferase

Probab=99.92  E-value=8.6e-25  Score=172.01  Aligned_cols=113  Identities=20%  Similarity=0.275  Sum_probs=97.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccccc-----ccc-ccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLKPE-----FVP-QQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~~~-----~~~-~~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||+++|||++| || ++++..     +.. ..+..+++||++||
T Consensus       252 ~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~--pDiv~lsK~lg-gG~~pigav~~~~~i~~~~~~~~~~~T~~g~p  328 (474)
T PLN02624        252 ELCSKHNVLMIADEIQTGLARTGKMLACDWEEVR--PDVVILGKALG-GGVIPVSAVLADKDVMLCIKPGEHGSTFGGNP  328 (474)
T ss_pred             HHHHHcCCEEEEeccccCcCcCcchhhHHhcCCC--CCEEEeccccc-CCCCcceeeeecHHHHhHhccCCcCCCCCCCH
Confidence            4899999999999999999999999988889987  99999999995 55 444332     222 23456788999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++++++.++|+.++++++.+++++++++|+++|+++.+++|.+
T Consensus       329 l~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~  371 (474)
T PLN02624        329 LASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKL  371 (474)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999999999999988999999999999999999998888853

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.91  E-value=3e-24  Score=167.89  Aligned_cols=113  Identities=28%  Similarity=0.396  Sum_probs=98.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||++||||+|.+++++++++.  |||++|||++ ++|++++..     +.+ ..+..+++||++||+
T Consensus       247 ~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~--pDi~t~sK~l-~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l  323 (451)
T PRK06918        247 NICSEHGILFVADEIQTGFARTGKYFAIEHFDVV--PDLITVSKSL-GAGVPISGVIGRKEIMDESAPGELGGTYAGSPL  323 (451)
T ss_pred             HHHHHcCCEEEEeccccCcCccCceehhHhcCCC--CCEEeeehhh-cCCCccEEEEEcHHHHhccCCCCcCcCCCcCHH
Confidence            4899999999999999999999998899999988  9999999999 577766432     222 223457899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++++++++|++++++++.+++++++++++++|+++.+++|.+
T Consensus       324 ~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~  365 (451)
T PRK06918        324 GCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCI  365 (451)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            999999999999989999999999999999999998888754

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.91  E-value=2.3e-24  Score=166.02  Aligned_cols=110  Identities=21%  Similarity=0.265  Sum_probs=97.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~   71 (119)
                      +||++||++||+|||+||| |...+++.++||++  ||+.||||.+ +||+|++.     ++++    ..+.+..+|++|
T Consensus       228 ~lt~e~G~lLI~DEViTGF-R~~~gGaq~~~gi~--PDlttlGKiI-GGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sg  303 (432)
T COG0001         228 ELTEEHGALLIFDEVITGF-RVALGGAQGYYGVE--PDLTTLGKII-GGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSG  303 (432)
T ss_pred             HHHHHcCcEEEEecchhhc-ccCCcccccccCcC--cchhhhhhhh-cCCcceeeeccHHHHHhhhCCCCCccccCCCCC
Confidence            5899999999999999999 99889999999999  9999999999 79999853     3433    345567789999


Q ss_pred             CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          72 DPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      ||+++++++++|+.+++ +..++++.+++++|++.|++..+++.
T Consensus       304 nplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g  347 (432)
T COG0001         304 NPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHG  347 (432)
T ss_pred             cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999987 46899999999999999999987763

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.90  E-value=3.2e-24  Score=166.66  Aligned_cols=113  Identities=17%  Similarity=0.195  Sum_probs=96.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||+|+ |+|.+|+++++++.  ||+++|||+++ +|++.+.     .+.+    .....+++||++
T Consensus       225 ~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~--pDi~~~gK~l~-~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~  300 (426)
T PRK00062        225 ELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVT--PDLTTLGKIIG-GGLPVGAFGGRREIMEQLAPLGPVYQAGTLSG  300 (426)
T ss_pred             HHHHHcCCEEEEeechhcc-ccCCccHHHHhCCC--cchHhhhhHhh-CCCcceeeeEHHHHHHhhccCCCceecccCcC
Confidence            4899999999999999999 99988888889998  99999999994 6665432     2222    123457789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ||++|++++++|++++++++++++++++++++++|+++.+++|.+.
T Consensus       301 ~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  346 (426)
T PRK00062        301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPL  346 (426)
T ss_pred             CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence            9999999999999999888999999999999999999988887653

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.90  E-value=2.3e-23  Score=159.81  Aligned_cols=110  Identities=30%  Similarity=0.418  Sum_probs=93.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||+|+||||+|++++++++++.  ||++||||++ ++|++++.     .+.+. ....+.+||++||+
T Consensus       211 ~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~--pDi~t~sK~l-~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~  287 (398)
T PRK03244        211 EITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVT--PDVVTLAKGL-GGGLPIGACLAFGPAADLLTPGLHGSTFGGNPV  287 (398)
T ss_pred             HHHHHcCCEEEEeccccCCcccchHHhhhhhCCC--CCEEEEchhh-hCCcccEEEEEcHHHHhhccCCCCcCCCCCCHH
Confidence            4899999999999999999999998888888988  9999999999 46666543     23222 23346789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +++++.++|++++++++.+++++++++|++.|+++  .+|.
T Consensus       288 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~  326 (398)
T PRK03244        288 ACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL--GHPL  326 (398)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--CCCc
Confidence            99999999999988899999999999999999986  3554

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.90  E-value=1.3e-23  Score=162.64  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=95.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~----~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||+|| |+|.+|+++++++.  ||++||||+++ +|++++.     .+.+    .....+++||++
T Consensus       223 ~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~--pDi~t~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~  298 (423)
T TIGR00713       223 ALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVE--PDLTTLGKIIG-GGLPVGAFGGRREIMERLAPEGPVYQAGTLSG  298 (423)
T ss_pred             HHHHHhCCEEEEEcccccc-ccCcchhHHHhCCC--cchhhhhhhhc-CCCceeeeeEHHHHHHhhCcCCCeeeccCCCC
Confidence            4899999999999999999 99988888889998  99999999995 6665432     2222    113457789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||++|++++++|+.++++++.++++++++++++.|+++.++++.+
T Consensus       299 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  343 (423)
T TIGR00713       299 NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIP  343 (423)
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999988899999999999999999988877755

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.89  E-value=3.8e-23  Score=158.29  Aligned_cols=112  Identities=29%  Similarity=0.369  Sum_probs=95.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|++++++++++.  ||++||||++ ++|++++.     .+.+ .....+++||++||+
T Consensus       203 ~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~--pdi~t~sK~l-~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~  279 (389)
T PRK01278        203 QLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVT--PDIMAVAKGI-GGGFPLGACLATEEAAKGMTPGTHGSTYGGNPL  279 (389)
T ss_pred             HHHHHcCCEEEEeccccCCCcCCcceeecccCCC--CCEEEEehhc-cCCcceEEEEEcHHHHhccCCCCCCCCCCccHH
Confidence            4899999999999999999999998888888988  9999999999 57766543     2222 223456789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ++++++++|++++++++.+++++++++++++|+++.+++|.
T Consensus       280 ~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  320 (389)
T PRK01278        280 AMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPD  320 (389)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999988889999999999999999998777773

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.88  E-value=2.1e-22  Score=154.80  Aligned_cols=107  Identities=19%  Similarity=0.271  Sum_probs=90.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||+|+||||+|++++++++++.  ||+++|||++|+||++++.     ++.+. ....+.+||++||+
T Consensus       214 ~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~--pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~  291 (396)
T PRK04073        214 ELCKEENVLFIADEIQTGLGRTGKLFACDWDNVT--PDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPL  291 (396)
T ss_pred             HHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCC--CCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHH
Confidence            4799999999999999999999998888888887  9999999999655455432     23222 23356789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++++|+.++++++.+++++++++|++.|+++
T Consensus       292 ~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l  326 (396)
T PRK04073        292 ACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI  326 (396)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999988889999999999999999986

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.87  E-value=2.7e-22  Score=154.32  Aligned_cols=108  Identities=26%  Similarity=0.399  Sum_probs=89.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||||+||||+|++++++++++.  ||++|+||++++|+++++     +.+.+. ....+.+||++||+
T Consensus       214 ~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~--~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~  291 (401)
T TIGR01885       214 ELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVK--PDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPL  291 (401)
T ss_pred             HHHHHcCCEEEEechhhCCCccchhhHHhhcCCC--CCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHH
Confidence            4899999999999999999999998888888887  999999999953334432     223222 22345679999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      +++++.++|++++++++.+++++++++|++.|+++.
T Consensus       292 ~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~  327 (401)
T TIGR01885       292 ACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP  327 (401)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999888899999999999999999874

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.87  E-value=8.3e-22  Score=150.15  Aligned_cols=113  Identities=29%  Similarity=0.391  Sum_probs=93.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||+|+||||+|+++.++++++.  ||++||||+++ +|++.+     +.+.+. ....+.+||++||+
T Consensus       195 ~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~--~di~t~sK~l~-~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~  271 (377)
T PRK02936        195 TLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD--PDIVTVAKGLG-NGIPVGAMIGKKELGTAFGPGSHGSTFGGNPL  271 (377)
T ss_pred             HHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC--CcEEEEccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHH
Confidence            4799999999999999999999998888888887  99999999995 665543     223222 23346689999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +++++.++|+.+++++++++++++++++++.|+++.+++|.+
T Consensus       272 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  313 (377)
T PRK02936        272 AMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECV  313 (377)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence            999999999999777899999999999999999876666653

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=1.7e-21  Score=148.70  Aligned_cols=113  Identities=25%  Similarity=0.341  Sum_probs=94.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||+++||||+|.++.++++++.  |||+||||++ ++|++++.     .+.+. ....+.+||++||+
T Consensus       193 ~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~--pdi~t~sK~l-~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~  269 (375)
T PRK04260        193 DYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE--PDIFTLAKGL-ANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKL  269 (375)
T ss_pred             HHHHHcCCEEEEechhhCCCcccchhhhHhhCCC--CCEEEecccc-cCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHH
Confidence            4799999999999999999999998888888988  9999999999 55655432     22221 22346789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +++++.++|+.+++++++++++++++++++.|+++..++|.+
T Consensus       270 ~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  311 (375)
T PRK04260        270 SMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETV  311 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            999999999999888899999999999999999987777643

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.85  E-value=5e-21  Score=147.51  Aligned_cols=112  Identities=24%  Similarity=0.399  Sum_probs=94.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+|||++|+||+|++++++++++.  |||.+|||++ ++|++++.     .+.+. ....+.+||+++|+
T Consensus       212 ~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~--pdi~s~sK~l-~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~  288 (403)
T PRK05093        212 ELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVT--PDILTSAKAL-GGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPL  288 (403)
T ss_pred             HHHHHcCCEEEEechhhCCCCCccchhhhhcCCC--CCEEEecccc-cCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHH
Confidence            4899999999999999999999998877888988  9999999999 47776643     23222 23356679999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      .++++.++|+.++++++.+++++++++|++.|+++..+++.
T Consensus       289 ~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  329 (403)
T PRK05093        289 ACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGV  329 (403)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999988889999999999999999998655543

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.84  E-value=8.7e-21  Score=145.41  Aligned_cols=112  Identities=25%  Similarity=0.370  Sum_probs=92.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccc-----cccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLK-----PEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~-----~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+||+++|+||+|+++..+++++.  ||++++||++ ++|+ +++     +.+.+. ....+.+||+++|
T Consensus       206 ~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~--pd~~~~sK~l-~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~  282 (400)
T PTZ00125        206 ELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVK--PDIVLLGKAL-SGGLYPISAVLANDDVMLVIKPGEHGSTYGGNP  282 (400)
T ss_pred             HHHHHcCCEEEEeccccCCCccchhhHHHhcCCC--CCEEEEcccc-cCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCH
Confidence            4799999999999999999999998888888887  9999999999 5555 332     223222 2234567899999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +.++++.++|+.++++++.+++++++++++++|+++...+|.
T Consensus       283 ~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  324 (400)
T PTZ00125        283 LACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPW  324 (400)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999988889999999999999999998665654

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.84  E-value=1.8e-20  Score=145.62  Aligned_cols=113  Identities=27%  Similarity=0.423  Sum_probs=97.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|.||+++|+||+|.+++++++++.  |||.+|||++ ++|++++.     .+.+ .....+.+|+++||+
T Consensus       227 ~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~--pdi~s~sK~l-~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~  303 (425)
T PRK08088        227 ALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVA--ADLTTFAKSI-AGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPI  303 (425)
T ss_pred             HHHHHcCCEEEEeccccCCCcCcchhHHhhcCCC--CCEEEEeccc-cCCCcceeeEecHHHHhhcCCCCCCCCCCcCHH
Confidence            4899999999999999999999998888888887  9999999999 57775532     2222 223446789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      .++++.++|+.++.+++.+++++.++++++.|+++.+++|.+
T Consensus       304 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  345 (425)
T PRK08088        304 ACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEI  345 (425)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999999999999888999999999999999999999888865

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.83  E-value=2.1e-20  Score=142.85  Aligned_cols=113  Identities=27%  Similarity=0.379  Sum_probs=94.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||+++||||+|.+++++.+++.  ||+++|||+++ +|++++.     .+.+. ....+.+||++||+
T Consensus       210 ~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~--pdi~t~sK~~~-~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~  286 (396)
T PRK02627        210 ELCDENGILLILDEVQTGMGRTGKLFAYQHYGIE--PDIMTLAKGLG-GGVPIGAVLAKEKVADVFTPGDHGSTFGGNPL  286 (396)
T ss_pred             HHHHHcCCEEEEechhcCCCccCceeeehhcCCC--CCEEEEcchhh-CCcccEEEEEcHHHHhccCCCCCCCCCCCCHH
Confidence            4799999999999999999999988777888887  99999999995 6665532     23222 22346789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +++++.++|+.++++++.++++++++++++.|+++..++|.+
T Consensus       287 ~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (396)
T PRK02627        287 ACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGI  328 (396)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999999999999888899999999999999999987767643

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.83  E-value=2.4e-20  Score=143.03  Aligned_cols=111  Identities=32%  Similarity=0.454  Sum_probs=93.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc---cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ---QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~---~~~~~~~T~~~~   72 (119)
                      ++|++||+++|+||+++||||+|.++.++++++.  ||++++||+++ +|++++     +.+.+.   ....+.+|+++|
T Consensus       219 ~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~--~d~~t~sK~l~-~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~  295 (413)
T cd00610         219 ELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVE--PDIVTLGKGLG-GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGN  295 (413)
T ss_pred             HHHHHcCCEEEEeccccCCCcCcchhhHhhcCCC--CCeEEEccccc-CccccEEEEEcHHHHHhhccCCCCCCCCCCcC
Confidence            4799999999999999999999998888888987  99999999994 455443     223332   344566899999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      |++++++.++|++++++++.++++++++++++.|+++...++
T Consensus       296 ~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~  337 (413)
T cd00610         296 PLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHP  337 (413)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999998888999999999999999998876544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.82  E-value=7.2e-20  Score=140.59  Aligned_cols=107  Identities=21%  Similarity=0.373  Sum_probs=89.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-cc-----ccccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FL-----KPEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~-----~~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+||+|+|+|++|.+++.+++++.  ||++++||++ +||+ ++     .+++.+. ....+++||++||
T Consensus       215 ~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~--~D~~~~~K~l-~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~  291 (401)
T PRK00854        215 ELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIE--ADVTLIGKAL-SGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNP  291 (401)
T ss_pred             HHHHHcCCEEEEechhhCCCCCchHhHHhhcCCC--CCEEEecccc-cCCccCeEEEEEcHHHHhcccCCCCCCCCCcCH
Confidence            4799999999999999999999998777788987  9999999999 6775 32     2223222 2234667999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      +++++++++|+.++++++.++++++++++++.|+++.
T Consensus       292 ~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~  328 (401)
T PRK00854        292 LACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIR  328 (401)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999888889999999999999999873

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.75  E-value=4.9e-18  Score=130.75  Aligned_cols=106  Identities=25%  Similarity=0.366  Sum_probs=86.9

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEE--EEchhhc-cCccccccc-----cccccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~   69 (119)
                      +||++|+++|++||+|. | +|..|++ ..+++|+. ...||+  ||||++| .|||++.+.     +.+..++++||| 
T Consensus       195 ~L~~ky~a~L~VDEAHa~Gv~G~~GrG-~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~v~g~~~~~d~L~~~ar~~ifSt-  272 (388)
T COG0156         195 ELAEKYGALLYVDEAHAVGVLGPNGRG-LAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFST-  272 (388)
T ss_pred             HHHHHhCcEEEEEccccccccCCCCcc-HHHHhCCCCccceEEEEEchhhhcccCceeeCcHHHHHHHHHhCCceeccC-
Confidence            48999999999999974 4 4555555 56788987 223565  9999999 799998653     455678899999 


Q ss_pred             CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +.+|..++++.++|+++++ ++.+++++++.+++++.++.
T Consensus       273 alpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~  312 (388)
T COG0156         273 ALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA  312 (388)
T ss_pred             CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999986 47889999999999966665

>PLN02822 serine palmitoyltransferase

Probab=99.71  E-value=2.5e-17  Score=130.02  Aligned_cols=108  Identities=20%  Similarity=0.269  Sum_probs=84.6

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEEE--Echhhc-cCccccccc-ccccc-ccceeeccCC-
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIVT--FSKKMQ-LGGYFLKPE-FVPQQ-AYRVFNTWMG-   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~t--~gK~lg-~gG~~~~~~-~~~~~-~~~~~~T~~~-   71 (119)
                      ++|++||++||+||+|+ | +|++|++ .++++++. ..|||++  |||++| .||+++.+. +.+.. ...+..||++ 
T Consensus       269 ~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~dii~~s~sKalg~~GG~i~g~~~ii~~~~~~~~~~~fsa~  347 (481)
T PLN02822        269 RLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSAS  347 (481)
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeEEEecchhhhhhCCeEEEcCHHHHHHHHhcCCceeeccc
Confidence            48999999999999997 3 6888876 67889983 2489987  889997 588887643 43321 2234445555 


Q ss_pred             -CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 -DPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 -~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                       +|..+++++++|+.+++ ++.++++++++++|++.|+++
T Consensus       348 lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~  387 (481)
T PLN02822        348 LPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDI  387 (481)
T ss_pred             cCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence             48899999999999876 678899999999999999875

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.68  E-value=1.2e-16  Score=123.16  Aligned_cols=109  Identities=21%  Similarity=0.230  Sum_probs=80.5

Q ss_pred             ChhhhhCCEEEEccccc--cccCCCcchhhhhcCCCCCC----CEEEE--chhhc-cCccccc-ccccccc-ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT--GGGPCGKFWCHEHFDLEESP----DIVTF--SKKMQ-LGGYFLK-PEFVPQQ-AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t--G~Gr~G~~~~~~~~g~~~~p----Di~t~--gK~lg-~gG~~~~-~~~~~~~-~~~~~~T~   69 (119)
                      ++|++||++||+||+|+  ++|++|+ |+++++|+.  |    ||+++  +|++| .||++.. +.+.+.. ...+.+||
T Consensus       162 ~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~--p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~  238 (392)
T PLN03227        162 ALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLK--PMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCF  238 (392)
T ss_pred             HHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCC--CCCCceEEEeechhhhhccCcEEecCHHHHHHHHHhCcCccc
Confidence            48999999999999997  3566666 578999997  7    99864  57775 5676653 3444322 22345566


Q ss_pred             CCC--HHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          70 MGD--PGKVLLLKGIIDT-IHNENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        70 ~~~--p~~~a~a~a~l~~-i~~~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      +++  |..+++++++++. ++++++++++++++++|+++|++  ..+|
T Consensus       239 ~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~--~~~~  284 (392)
T PLN03227        239 SASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN--SSHP  284 (392)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh--cCCc
Confidence            765  8888888877755 55678999999999999999986  3455

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.67  E-value=2.5e-16  Score=121.18  Aligned_cols=107  Identities=22%  Similarity=0.219  Sum_probs=83.0

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~   70 (119)
                      ++|++||++||+||+|+ | +|+.|.++ .++.++...||++  ||||++| .||++..+ .+.+    ..+.+.+ |.+
T Consensus       202 ~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~~~~~~~~~~~l~~~~~~~~~-t~~  279 (407)
T PRK09064        202 DLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIF-TTS  279 (407)
T ss_pred             HHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCceEecCHHHHHHHHHhCccccc-cCc
Confidence            48999999999999997 7 68988765 5667765458988  9999997 57887653 2322    2233333 448


Q ss_pred             CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|.++++++++++.+++. ..+++++++.++|++.|+++
T Consensus       280 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (407)
T PRK09064        280 LPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA  319 (407)
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            8999999999999999865 34578999999999999875

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.66  E-value=7.1e-16  Score=117.23  Aligned_cols=110  Identities=32%  Similarity=0.477  Sum_probs=87.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++|++++|+||+++|||+.|.++.++..++.  ||++||||+++ +|+.++     +.+.+. ....+..+|+.||+
T Consensus       198 ~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~--~d~~t~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (379)
T TIGR00707       198 EICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIE--PDIITLAKGLG-GGVPIGATLAKEEVAEAFTPGDHGSTFGGNPL  274 (379)
T ss_pred             HHHHHcCCEEEEeccccCCCccchhhhHHhcCCC--CCEEEEccccc-CCcccEEEEEcHHHHhhhcCCCCCCCCCCCHH
Confidence            4799999999999999999999876666667877  99999999995 654432     223222 22234567889999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES  113 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~  113 (119)
                      +++++.++|+.++++++.++++++.++++++|+++..++
T Consensus       275 ~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (379)
T TIGR00707       275 ACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNY  313 (379)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999877888999999999999998875443

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.66  E-value=3e-16  Score=123.49  Aligned_cols=103  Identities=18%  Similarity=0.161  Sum_probs=81.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCc--chhhhhcCCCCCCCEE--EEchhhc-cCccccccc-----cccccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK--FWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~~   70 (119)
                      +||++||++||+||+|+ +|+.|.  .|..+++|+....||+  ||||++| .|||++.+.     +.+..+.+++|| +
T Consensus       273 ~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGfi~gs~~~~~~l~~~~~~~ifSt-a  350 (476)
T PLN02955        273 QLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFST-A  350 (476)
T ss_pred             HHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCceeecHHHHHHHHHHhCCCCeecc-c
Confidence            48999999999999975 445554  4567889987334444  9999997 699988643     344567788888 8


Q ss_pred             CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHH
Q psy4800          71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNV  105 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~  105 (119)
                      .+|..++++++++++++++ ..+++++++.++|++.
T Consensus       351 lpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~  386 (476)
T PLN02955        351 IPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL  386 (476)
T ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            8899999999999998654 5678899999999984

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.64  E-value=1.4e-15  Score=117.07  Aligned_cols=107  Identities=24%  Similarity=0.261  Sum_probs=80.8

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~   70 (119)
                      ++|++||++||+||+|+ | +|+.|.+ ..+++++...||++  ||+|++| .||++..+ .+.+    ..+.+.+ |.+
T Consensus       201 ~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~~GG~i~~~~~~~~~l~~~~~~~~~-t~~  278 (402)
T TIGR01821       201 DLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLMHRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIF-TTS  278 (402)
T ss_pred             HHHHHcCCEEEEeCcccccccCCCCCc-cchhccCCCCCeEEEEechhhhccCCceeecCHHHHHHHHHhCcCcee-cCc
Confidence            47999999999999997 6 4677654 34666765458988  9999997 48887643 3322    2233344 448


Q ss_pred             CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++|.++++++++|+.+++. .+.++++++.+++++.|+++
T Consensus       279 ~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (402)
T TIGR01821       279 LPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL  318 (402)
T ss_pred             CCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999998865 45667789999999999876

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>KOG1359|consensus

Probab=99.62  E-value=1.7e-15  Score=112.43  Aligned_cols=114  Identities=23%  Similarity=0.286  Sum_probs=92.8

Q ss_pred             ChhhhhCCEEEEcccc-cc-ccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccccc-----cccccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQ-TG-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE-----FVPQQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~-tG-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~-----~~~~~~~~~~~T~   69 (119)
                      +|++|||++|++||.| || ||.+|.+ ..|.+|+...+||+  |+||++|  .|||...+.     +.+..+++.||+ 
T Consensus       217 ~La~kYgaLlfiDecHaTgf~G~tGrG-t~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llrqr~RpylFSn-  294 (417)
T KOG1359|consen  217 QLAKKYGALLFIDECHATGFFGETGRG-TAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQRSRPYLFSN-  294 (417)
T ss_pred             HHHHhcCcEEEEeecccceeecCCCCC-hHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHHhcCCceeecC-
Confidence            4789999999999999 57 5888865 66889988889998  9999998  689987543     445677888998 


Q ss_pred             CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh-----hhcCCCC
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL-----GQESNLQ  116 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l-----~~~~p~i  116 (119)
                      +.+|..+..+.++++.+.. .....+.+.+.++|++..+..     .+.||++
T Consensus       295 slppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg~~hPI~  347 (417)
T KOG1359|consen  295 SLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGASHPIC  347 (417)
T ss_pred             CCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecCCCCCcc
Confidence            8999999999999998764 467778889999999988765     2456653

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.62  E-value=2.5e-15  Score=115.92  Aligned_cols=107  Identities=21%  Similarity=0.169  Sum_probs=81.8

Q ss_pred             ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|+ |+ |++|.++ .++.++...+||+  ||||++| .||+++.+ .+.+    ..+.+. .|++
T Consensus       201 ~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~~GG~~~~~~~~~~~l~~~~~~~~-~t~~  278 (406)
T PRK13393        201 DVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFI-FTTS  278 (406)
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcccCceeeCCHHHHHHHHHhCcCce-ecCc
Confidence            47999999999999997 85 9998765 4777776557887  9999997 58887643 2322    222222 3558


Q ss_pred             CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++|.+++++.++|+.+++. ..++++++++++|++.|+++
T Consensus       279 ~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (406)
T PRK13393        279 LPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA  318 (406)
T ss_pred             cCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999998754 34466789999999999875

>KOG1360|consensus

Probab=99.47  E-value=1.2e-13  Score=106.02  Aligned_cols=107  Identities=21%  Similarity=0.206  Sum_probs=85.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cCccccccc-----cccccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~~   70 (119)
                      ++++|||++..+||||. .|-.|..  |.-|+-|+-.+.||+  |+||++| .|||+.+..     +....+.++|+| +
T Consensus       327 Dvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGYIAat~~LvDmiRSyAaGFIFTT-S  404 (570)
T KOG1360|consen  327 DVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIFTT-S  404 (570)
T ss_pred             HHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhcccccceehhhhhHHHHHHHhcCceEEec-C
Confidence            36789999999999975 4445542  345778888789999  9999999 799998643     334567888888 9


Q ss_pred             CCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..++.|++++++++.+   .+++.-+++.+++++.|.++
T Consensus       405 LPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~  446 (570)
T KOG1360|consen  405 LPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL  446 (570)
T ss_pred             CChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999754   35555678889999999887

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.47  E-value=2.5e-13  Score=104.87  Aligned_cols=107  Identities=21%  Similarity=0.189  Sum_probs=79.4

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|+ | +|+.|.+. .++.++...+|++  +|+|++| .||++..+ .+.+    ....+++++ +
T Consensus       202 ~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~~GG~~~~~~~~~~~l~~~~~~~~~s~-~  279 (410)
T PRK13392        202 DLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTT-A  279 (410)
T ss_pred             HHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhcccchhhcCHHHHHHHHHhCcchhccC-c
Confidence            47999999999999997 6 47777654 4556665458887  9999998 67887643 3322    233344444 7


Q ss_pred             CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|+.++++.++|+.+++. ...++++++.+++++.|+++
T Consensus       280 ~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (410)
T PRK13392        280 LPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN  319 (410)
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            8889999999999988754 34566888899999999875

>PRK07505 hypothetical protein; Provisional

Probab=99.42  E-value=5.5e-13  Score=102.81  Aligned_cols=89  Identities=16%  Similarity=0.166  Sum_probs=63.8

Q ss_pred             ChhhhhCCEEEEcccc--ccccCCCcchhhhhcCC-CCCCCEE----EEchhhc-cCccccc-c-ccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQ--TGGGPCGKFWCHEHFDL-EESPDIV----TFSKKMQ-LGGYFLK-P-EFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~--tG~Gr~G~~~~~~~~g~-~~~pDi~----t~gK~lg-~gG~~~~-~-~~~~~-~~~~~~~T~   69 (119)
                      ++|++||++||+||+|  +|+||+|.++..+++++ .  ||.+    +++|+++ +||+++. + .+... ....+.+||
T Consensus       203 ~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~--~d~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~t~  280 (402)
T PRK07505        203 RLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRL--NERTIIAASLGKAFGASGGVIMLGDAEQIELILRYAGPLAF  280 (402)
T ss_pred             HHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCC--CCCeEEEEechhhhhccCeEEEeCCHHHHHHHHHhCCCcee
Confidence            4899999999999998  57899998877788886 4  7744    8999997 4577642 2 33221 112233455


Q ss_pred             CC--CHHHHHHHHHHHHHHhhhcH
Q psy4800          70 MG--DPGKVLLLKGIIDTIHNENL   91 (119)
Q Consensus        70 ~~--~p~~~a~a~a~l~~i~~~~~   91 (119)
                      ++  +|++++++.++++++.++.+
T Consensus       281 ~~~~~~~a~aa~~a~l~~~~~~~~  304 (402)
T PRK07505        281 SQSLNVAALGAILASAEIHLSEEL  304 (402)
T ss_pred             CCCCCHHHHHHHHHHHHHHhccCc
Confidence            44  56899999999998765543

>PLN02483 serine palmitoyltransferase

Probab=99.35  E-value=3.8e-12  Score=100.91  Aligned_cols=107  Identities=21%  Similarity=0.325  Sum_probs=77.0

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEE--EEchhhc-cCcccccc-ccccc----cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIV--TFSKKMQ-LGGYFLKP-EFVPQ----QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~--t~gK~lg-~gG~~~~~-~~~~~----~~~~~~~T~   69 (119)
                      ++|++||++||+||+|+ | +|++|.+ ..+++++. ...||+  +|+|++| .||++..+ .+.+.    .+...+++ 
T Consensus       264 ~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~~GG~i~~~~~li~~l~~~~~~~~~~~-  341 (489)
T PLN02483        264 AVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYAT-  341 (489)
T ss_pred             HHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccCcEEEEecchhcccCceEEEcCHHHHHHHHHhCccccccC-
Confidence            47999999999999986 3 5777765 45677775 225777  9999998 68888753 33332    11122233 


Q ss_pred             CCCHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNE-------NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~-------~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+|..++++.++|+++..+       +.+++++++.++|++.|+++
T Consensus       342 ~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~  388 (489)
T PLN02483        342 SMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM  388 (489)
T ss_pred             CcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC
Confidence            46788888899999987632       34567889999999999885

>PRK07179 hypothetical protein; Provisional

Probab=99.29  E-value=1.7e-11  Score=94.57  Aligned_cols=107  Identities=18%  Similarity=0.253  Sum_probs=73.6

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCccccc-cccccc----cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLK-PEFVPQ----QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~-~~~~~~----~~~~~~~T~~   70 (119)
                      ++|++||++||+||+|+ | +|++|.++ .+++++...+|++  +++|++| .+|++.. +.+.+.    ..+..+++ +
T Consensus       205 ~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~~S~sK~~g~~~G~l~~~~~~~~~~~~~~~~~~~~~-t  282 (407)
T PRK07179        205 DIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSS-T  282 (407)
T ss_pred             HHHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEEeechHhhhccCeEEEeCHHHHHHHHHhCcCeeeCC-C
Confidence            48999999999999997 3 45666553 4567775346886  5799997 4555553 233221    11222222 3


Q ss_pred             CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..++++.++++.+++. +.+++++++.++|++.|+++
T Consensus       283 ~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~  322 (407)
T PRK07179        283 LLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL  322 (407)
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            3466677778889988765 57788999999999999876

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.27  E-value=2.7e-11  Score=91.89  Aligned_cols=108  Identities=22%  Similarity=0.259  Sum_probs=75.8

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCC---EEEEchhhc-cCcccccc-ccccc---cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPD---IVTFSKKMQ-LGGYFLKP-EFVPQ---QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pD---i~t~gK~lg-~gG~~~~~-~~~~~---~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|. | +++.|..+ ....++...+|   +.+++|+++ .||++..+ .+.+.   ....+..+.+
T Consensus       192 ~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~  270 (385)
T PRK05958        192 ALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTA  270 (385)
T ss_pred             HHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceEEEEechhhcccCCcEEEcCHHHHHHHHHhCccceecCC
Confidence            47999999999999995 4 45556543 23334433366   459999997 46766543 23221   1112334447


Q ss_pred             CCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|++++++.++|+.+++. ++.+++.++.+++.+.|+++
T Consensus       271 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T PRK05958        271 LPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL  310 (385)
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            8999999999999988764 67788999999999999875

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.23  E-value=5.8e-11  Score=90.46  Aligned_cols=107  Identities=25%  Similarity=0.369  Sum_probs=74.2

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCE--EEEchhhc-cCcccccc-ccccc----cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDI--VTFSKKMQ-LGGYFLKP-EFVPQ----QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi--~t~gK~lg-~gG~~~~~-~~~~~----~~~~~~~T~~   70 (119)
                      ++|++||+++|+||++. | +++.|.+ ...++++....|+  .+|+|+++ .||++..+ .+.+.    ...+..+| .
T Consensus       187 ~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~-~  264 (385)
T TIGR01825       187 ELAERYGAVTYVDDAHGSGVMGEAGRG-TVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFST-A  264 (385)
T ss_pred             HHHHHhCCEEEEECcccccCcCCCCCc-cHhhcCCCcCCcEEEEeccHHhhcCCCEEecCHHHHHHHHHhCccccccC-C
Confidence            47999999999999985 4 5655543 3445566512333  59999997 56877643 23221    12223333 5


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..++++.++++.+.+ ++..++++++.+++.+.|+++
T Consensus       265 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  304 (385)
T TIGR01825       265 QPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL  304 (385)
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            678888999999998754 467788899999999999875

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.20  E-value=5.9e-11  Score=90.73  Aligned_cols=106  Identities=20%  Similarity=0.261  Sum_probs=71.7

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCC-CCCEEEEchhhc-cCcccc-cccc----ccccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEE-SPDIVTFSKKMQ-LGGYFL-KPEF----VPQQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~-~pDi~t~gK~lg-~gG~~~-~~~~----~~~~~~~~~~T~~~   71 (119)
                      ++|++||++|++||+|+ | +|+.|.++. ..++..+ .+|+.||+|++| .|+.++ .+.+    ....++..+++ +.
T Consensus       167 ~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~~~~~~~~~~~~~~~~s~-~~  244 (370)
T PRK05937        167 ALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYSKALGSMGAALLSSSEVKQDLMLNSPPLRYST-GL  244 (370)
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEechhhhhcCceEEEcCHHHHHHHHHhCCCCeecC-CC
Confidence            47999999999999997 6 677776543 2334321 167789999997 233333 2322    11223344444 68


Q ss_pred             CHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~  108 (119)
                      +|..+++..++++++++.  ..+++++++.++|++.|..
T Consensus       245 ~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~  283 (370)
T PRK05937        245 PPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS  283 (370)
T ss_pred             CHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999753  3566788888888877754

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.17  E-value=8.7e-11  Score=93.07  Aligned_cols=106  Identities=17%  Similarity=0.100  Sum_probs=69.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCcccccc-ccc---cccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKP-EFV---PQQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~-~~~---~~~~~~~~~T~~~~   72 (119)
                      ++|++||++|++|++|. +|-.|-....+.++.....|++  |++|+| | .||++..+ .+.   +...+++++| +.+
T Consensus       242 eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a~P~i~gg-~l~  319 (493)
T PRK13580        242 EIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKGCPLVLGG-PLP  319 (493)
T ss_pred             HHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhCCCcccCC-Ccc
Confidence            48999999999999975 4444422211222222247877  889999 5 57777643 222   3334566666 566


Q ss_pred             HHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      |..++.+.+ +..+.++   +..++++++.++|++.|++.
T Consensus       320 p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~~  358 (493)
T PRK13580        320 HVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLKR  358 (493)
T ss_pred             HHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            655555554 5555433   36789999999999999875

>KOG1357|consensus

Probab=99.16  E-value=8.4e-11  Score=91.38  Aligned_cols=107  Identities=20%  Similarity=0.311  Sum_probs=81.5

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCC-CCCEE--EEchhhc-cCccccccc-ccc----ccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEE-SPDIV--TFSKKMQ-LGGYFLKPE-FVP----QQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~-~pDi~--t~gK~lg-~gG~~~~~~-~~~----~~~~~~~~T~   69 (119)
                      ++++||.++|++||+|+ | .|++|++ .++++|++. ..||+  ||-|+.| +|||+..++ +.+    ......+.| 
T Consensus       300 alkkkykayl~lDEAHSiGA~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~GGyiagsk~lid~lrt~s~~~~yat-  377 (519)
T KOG1357|consen  300 ALKKKYKAYLYLDEAHSIGAMGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYAT-  377 (519)
T ss_pred             HhhccccEEEEeeccccccccCCCCcc-eeeccCCCchhheeecceehhhcccccceecCcHHHHhhhccCCCceeecc-
Confidence            47999999999999997 4 6888855 778888872 25666  9999998 788888765 322    222233445 


Q ss_pred             CCCHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-------ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-------~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+|..+...+.+++.|..       ++..+++.++.++||..|+..
T Consensus       378 ~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~  424 (519)
T KOG1357|consen  378 SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM  424 (519)
T ss_pred             cCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC
Confidence            6788889999999999863       235677899999999999876

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.10  E-value=5.4e-10  Score=85.44  Aligned_cols=107  Identities=21%  Similarity=0.272  Sum_probs=72.3

Q ss_pred             ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccc----ccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVP----QQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~----~~~~~~~~T~   69 (119)
                      ++|++||++||+||+|. |+ |..|.+ ..+..++...+|++  +++|+++  .+|++..+ .+.+    ....+.+++ 
T Consensus       194 ~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~~~~~~~-  271 (393)
T TIGR01822       194 DLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSN-  271 (393)
T ss_pred             HHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCccceecC-
Confidence            47999999999999984 43 444443 33445554347888  8999985  25665543 2222    122223332 


Q ss_pred             CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+|..++++.++++.+++ ++..++++++.+++++.|++.
T Consensus       272 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (393)
T TIGR01822       272 SLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA  312 (393)
T ss_pred             CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            4567777788899988764 467788999999999999874

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.10  E-value=5.5e-10  Score=83.84  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=71.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCc--chhhhhcCCC-CCCC--EEEEchhhc-cCcccccc-ccccc---cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK--FWCHEHFDLE-ESPD--IVTFSKKMQ-LGGYFLKP-EFVPQ---QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~~g~~-~~pD--i~t~gK~lg-~gG~~~~~-~~~~~---~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|+ +|..+.  ......+++. ...|  +.+|+|+++ .||++..+ .+.+.   ....+..+.+
T Consensus       170 ~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~  248 (360)
T TIGR00858       170 ALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTA  248 (360)
T ss_pred             HHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccCcEEEcCHHHHHHHHHhCccceecCC
Confidence            47999999999999986 444332  1223445654 1123  449999997 46776643 23221   1111222335


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..++++.++++.++. ++..++++++.+++.+.|+++
T Consensus       249 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  288 (360)
T TIGR00858       249 LPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL  288 (360)
T ss_pred             CCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence            778888888999988765 357788999999999999875

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.06  E-value=1.1e-09  Score=83.55  Aligned_cols=107  Identities=20%  Similarity=0.303  Sum_probs=72.1

Q ss_pred             ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccc----ccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVP----QQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~----~~~~~~~~T~   69 (119)
                      ++|++||+++|+||++. |+ ++.|.. ....+++...+|++  +++|+++  -+|++..+ .+..    ......+++ 
T Consensus       198 ~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~~~~~~~~~-  275 (397)
T PRK06939        198 DLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSN-  275 (397)
T ss_pred             HHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHhCccccccC-
Confidence            47999999999999984 53 444442 34455664347888  9999993  35666532 2322    112222222 


Q ss_pred             CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+|..++++.++++.+++ ++++++++++.+++++.|+++
T Consensus       276 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        276 SLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            4567778888888988865 367788899999999999875

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=98.97  E-value=1.9e-09  Score=85.41  Aligned_cols=104  Identities=14%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCcccccc-c--------------c---c
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKP-E--------------F---V   58 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~-~--------------~---~   58 (119)
                      ++|++||++|++|++|. +|-.+..+....+.   ..|++  |+.|+| | .||++..+ .              +   .
T Consensus       205 ~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~---~~Div~~t~hK~L~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i  280 (475)
T PLN03226        205 KIADKVGALLMCDMAHI-SGLVAAQEAASPFE---YCDVVTTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKI  280 (475)
T ss_pred             HHHHHcCCEEEEEchhh-hCcccCCCCCCCCC---CCeEEEecCcccccCCCceEEEEchhhcccccCCCccHHHHHHHh
Confidence            48999999999999975 44444332111122   37887  778999 4 56766532 1              1   1


Q ss_pred             cccccceeeccCCCHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800          59 PQQAYRVFNTWMGDPGKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        59 ~~~~~~~~~T~~~~p~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l  109 (119)
                      +......+++ +.+|..+++..++++.+.+++   ..+++.++.++|++.|++.
T Consensus       281 ~~a~~~~~~g-~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~  333 (475)
T PLN03226        281 NFAVFPGLQG-GPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK  333 (475)
T ss_pred             ccccCCccCC-CchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC
Confidence            1222223344 567788888889999997643   5788999999999999874

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=98.92  E-value=2.5e-09  Score=81.54  Aligned_cols=101  Identities=14%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCccccccc-cc----cccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKPE-FV----PQQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~~-~~----~~~~~~~~~T~   69 (119)
                      ++|++||+++|+||+|. |. |..|.. ....++    +|++  ||+|+| | -+||++.+. +.    ...+.+.+   
T Consensus       162 ~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~----~divv~s~SKalaG~r~G~v~~~~~li~~l~~~~~~~~~---  233 (346)
T TIGR03576       162 KQAKSKEAIVLVDDASGARVRRLYGQP-PALDLG----ADLVVTSTDKLMDGPRGGLLAGRKELVDKIKSVGEQFGL---  233 (346)
T ss_pred             HHHHHcCCEEEEECCccccccccCCCC-CHHHcC----CcEEEeccchhccccceEEEEeCHHHHHHHHHhhcCccc---
Confidence            36889999999999975 21 222322 122333    4655  899999 4 478877543 32    22333333   


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+|...+++.++|+.+..+...+.++++.+++++.++.+
T Consensus       234 s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~  273 (346)
T TIGR03576       234 EAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL  273 (346)
T ss_pred             CccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC
Confidence            2577788999999987655566777888888888877753

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=98.82  E-value=9e-09  Score=78.41  Aligned_cols=105  Identities=13%  Similarity=0.075  Sum_probs=64.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~   72 (119)
                      +||+.+++++|+||++++|++.|.....+..+..  |+++   +|||++| .|   |+++.+ .+.+.... ...++..+
T Consensus       184 ~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~--~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~-~~~~~~~s  260 (368)
T PRK03317        184 AILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEY--PRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRL-VRLPYHLS  260 (368)
T ss_pred             HHHHHCCceEEEeCCchhhcccCCcCHHHHHHhC--CCEEEEEechhhhccchhhhhhhhCCHHHHHHHHh-cCCCCCCC
Confidence            4678889999999999988766654444444433  7777   9999997 45   565543 23321111 11356778


Q ss_pred             HHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          73 PGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +++.+++.++|+..+. .+..++++++-+++.+.|++
T Consensus       261 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  297 (368)
T PRK03317        261 AVTQAAARAALRHADELLASVAALRAERDRVVAWLRE  297 (368)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888865432 12223344444455555544

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=98.80  E-value=1.1e-08  Score=79.81  Aligned_cols=105  Identities=16%  Similarity=0.097  Sum_probs=63.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccc-cc-cccccccceeecc---CC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLK-PE-FVPQQAYRVFNTW---MG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~-~~-~~~~~~~~~~~T~---~~   71 (119)
                      ++|++||++||+|++|. +|..+.+.   +.+....+|++  +++|+++  .||+++. +. +........++++   ..
T Consensus       190 ~la~~~g~~livD~Aha-~G~~~~g~---~~~~~~~~Di~~~s~~K~l~g~~GG~v~~~~~~~~~~~~~~~~~~~~~~~~  265 (416)
T PRK13034        190 EIADEVGALLMVDMAHI-AGLVAAGE---HPNPFPHAHVVTTTTHKTLRGPRGGMILTNDEEIAKKINSAVFPGLQGGPL  265 (416)
T ss_pred             HHHHHcCCEEEEeCccc-ccCcccCC---CCCCCCCceEEEEeCcccCCCCCCeEEEECcHHHHHHHHhhcCCcccCCcc
Confidence            47999999999999974 55555431   11111237877  6789993  4676653 22 2221112233221   22


Q ss_pred             CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +|..++++++.++.++.  ++++++++++.++|+++|+++
T Consensus       266 ~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~  305 (416)
T PRK13034        266 MHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER  305 (416)
T ss_pred             HHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444445566655532  345789999999999999875

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=98.77  E-value=4e-08  Score=73.66  Aligned_cols=107  Identities=21%  Similarity=0.236  Sum_probs=70.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCC-CCCCCEE--EEchhhc-cCcccccc-cccc----ccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDL-EESPDIV--TFSKKMQ-LGGYFLKP-EFVP----QQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~-~~~pDi~--t~gK~lg-~gG~~~~~-~~~~----~~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|. +|..+..+ ....... ...+|++  +++|.++ .||++..+ .+.+    ....+. .+..
T Consensus       156 ~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~gG~i~~~~~~~~~~~~~~~~~~-~~~~  233 (349)
T cd06454         156 DLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFI-FSTS  233 (349)
T ss_pred             HHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcccCCEEECCHHHHHHHHHhchhhh-ccCC
Confidence            47999999999999974 33333211 1112221 1236776  7999997 46766543 3322    111222 2336


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..++++.++|+.+.+ ++..+++.++.+++++.|+++
T Consensus       234 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         234 LPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            788889999999998875 567788899999999988775

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=98.55  E-value=8.5e-08  Score=71.21  Aligned_cols=109  Identities=25%  Similarity=0.234  Sum_probs=67.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchh-hhhcCCCCCCCEE--EEchhhc-cC---ccccc-c-cccccc-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEESPDIV--TFSKKMQ-LG---GYFLK-P-EFVPQQ-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~-~-~~~~~~-~~~~~~T~~   70 (119)
                      ++|++||+++|+||++.+++..+.... ....+. ...|++  +++|.++ .|   |++.. + .+.+.. ......++.
T Consensus       159 ~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~  237 (350)
T cd00609         159 ELAKKHGILIISDEAYAELVYDGEPPPALALLDA-YERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSG  237 (350)
T ss_pred             HHHHhCCeEEEEecchhhceeCCcccccccCcCc-cCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccC
Confidence            479999999999999987655444321 011111 113444  7999995 22   44443 2 233321 122233556


Q ss_pred             CCHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          71 GDPGKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      .++.+..++.+.++..+  .+...++++++.+++++.|++..
T Consensus       238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  279 (350)
T cd00609         238 PSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELG  279 (350)
T ss_pred             CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            78888888888887762  23556677888888888887753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.51  E-value=3.8e-07  Score=69.82  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhh---c----cCcccccc-ccccccc--------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKM---Q----LGGYFLKP-EFVPQQA--------   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~l---g----~gG~~~~~-~~~~~~~--------   62 (119)
                      ++|++||+++|+|++|+.....+..+   .+  .  +|++  .++|.+   |    .+|++..+ .+.+..+        
T Consensus       183 ~la~~~g~~livD~~~~~~~~~~~~~---~~--~--~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~  255 (398)
T cd00613         183 DIAHSAGALVYVDGDNLNLTGLKPPG---EY--G--ADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTK  255 (398)
T ss_pred             HHHHhcCCEEEEEeccccccCCCChH---Hc--C--CCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeecccc
Confidence            48999999999999975321111111   12  2  8887  456664   1    13344322 2221100        


Q ss_pred             ----------------------cceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhh
Q psy4800          63 ----------------------YRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        63 ----------------------~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l~  110 (119)
                                            ....+|++++++.++++.++++.+.++   +..++.+++.++++++|+++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~  328 (398)
T cd00613         256 DAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVG  328 (398)
T ss_pred             ccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                  011246778888988888888887654   355788999999999998863

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.50  E-value=5.4e-07  Score=68.91  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=56.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC--ccccc-cc----cccccccceeecc-
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG--GYFLK-PE----FVPQQAYRVFNTW-   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g--G~~~~-~~----~~~~~~~~~~~T~-   69 (119)
                      ++|++||+++|+||+|. +|..+..+.    ...  +|++  +++|+++ +|  ||+.. ..    +.+..+++.+++. 
T Consensus       170 ~la~~~~~~livDea~~-~g~~~~~~~----~~~--~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~  242 (370)
T TIGR02539       170 KVCREKGVPLLLNCAYT-VGRMPVSAK----EIG--ADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVE  242 (370)
T ss_pred             HHHHHcCCeEEEECccc-cCCcCCCHH----HcC--CCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceee
Confidence            47999999999999975 443332211    112  6765  8999996 34  56543 22    2222222222111 


Q ss_pred             ----CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhh
Q psy4800          70 ----MGDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        70 ----~~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l~  110 (119)
                          ...+.++.++.++++.+.+. +...+..++.++|++.|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g  288 (370)
T TIGR02539       243 LLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIG  288 (370)
T ss_pred             eecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                11123455556666653321 223334455678999998863

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=98.48  E-value=6.4e-07  Score=70.48  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=66.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cCcccc-cccccc----ccccceeecc--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LGGYFL-KPEFVP----QQAYRVFNTW--   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~gG~~~-~~~~~~----~~~~~~~~T~--   69 (119)
                      ++|+++|+++++|++|+ +|..+.... . ..+. .+|+++  ..|+|+  .||++. .+.+.+    ......+.+|  
T Consensus       204 ~i~~~~ga~l~vDaaq~-~G~i~~~~~-~-~~~~-~~D~l~~S~hK~l~GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G  279 (452)
T PTZ00094        204 EICDSVGAYLMADIAHT-SGLVAAGVL-P-SPFP-YADVVTTTTHKSLRGPRSGLIFYRKKVKPDIENKINEAVFPGLQG  279 (452)
T ss_pred             HHHHHcCCEEEEeccch-hccccCCCC-C-CCCC-CCcEEEcCCccCCCCCCceEEEEecccchHHHHhhccccCCCCCC
Confidence            47999999999999975 555543211 1 1111 379885  459883  345544 333211    1111122222  


Q ss_pred             CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.++..+++..++++.+.+.   +..+++.++.++|.+.|++.
T Consensus       280 ~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~  322 (452)
T PTZ00094        280 GPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR  322 (452)
T ss_pred             CchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC
Confidence            45677888888999998543   46788999999999999764

>KOG1358|consensus

Probab=98.40  E-value=3.7e-07  Score=70.43  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCC-CCCCEEE--Echhhc-cCccccccccc-cc----cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLE-ESPDIVT--FSKKMQ-LGGYFLKPEFV-PQ----QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~-~~pDi~t--~gK~lg-~gG~~~~~~~~-~~----~~~~~~~T~   69 (119)
                      ++..||..-+|+||..+ | +|++|++ ..+|+++. ...|+++  +.-+|+ +||+..++.++ ..    ...+.+|. 
T Consensus       257 ~lk~Kyk~RvildEs~SfG~lg~~GrG-vteH~~v~~~~iDiv~~sm~~alas~GgFc~G~~~i~~hQrLSg~~Y~fSA-  334 (467)
T KOG1358|consen  257 KLKNKYKFRVILDESLSFGVLGKTGRG-VTEHFGVPITDIDIVTASMETALASGGGFCAGKSFIADHQRLSGSGYCFSA-  334 (467)
T ss_pred             HHHhhheEEEEEecccccccccccCcc-ccccCCCCccceeeeeecccccccccCceeecceeeEeeeeccccceeeec-
Confidence            36789999999999976 5 4666655 67899987 4568885  555666 78888876543 21    22344555 


Q ss_pred             CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+|..+.+|..++++++. ++..+.++.....+...|+..
T Consensus       335 slPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~  375 (467)
T KOG1358|consen  335 SLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSN  375 (467)
T ss_pred             cCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcC
Confidence            7899999999999999975 577777777777777777663

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=98.35  E-value=2.5e-07  Score=69.11  Aligned_cols=105  Identities=13%  Similarity=0.029  Sum_probs=60.0

Q ss_pred             ChhhhhCCEEEEcccccc--ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCc-ccc-cccccccc---ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTG--GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGG-YFL-KPEFVPQQ---AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG--~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG-~~~-~~~~~~~~---~~~~~~T~~   70 (119)
                      ++|++||+++|+||++.-  .+-.|..  .......  +|++  +++|.++ .|| ++. .+.+.+..   ...+..++.
T Consensus       153 ~~~~~~~~~livDea~~~~~~~~~~~~--~~~~~~~--~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
T cd06502         153 ALAKENGLPLHLDGARLANAAAALGVA--LKTYKSG--VDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMR  228 (338)
T ss_pred             HHHHHcCCeEeechHHHHHHHHhcCCC--HHHHHhc--CCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCCChh
Confidence            478999999999998741  1112221  1112222  6766  8999987 334 333 23333211   111223445


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+++.++++.++|+.-...+..+++.++.+++.+.|+++
T Consensus       229 ~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~  267 (338)
T cd06502         229 QSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL  267 (338)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            567777777776653111235567778888999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=98.34  E-value=1.6e-06  Score=67.02  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccc-c-ccccc----cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLK-P-EFVPQ----QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~-~-~~~~~----~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|. +|..+.+......+   ..|++  +++|+++  -||+++. + .+...    ......+| .
T Consensus       187 ~la~~~~~~livD~a~~-~g~~~~g~~~~~~~---~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~-~  261 (416)
T PRK00011        187 EIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP---HADVVTTTTHKTLRGPRGGLILTNDEELAKKINSAVFPGIQGG-P  261 (416)
T ss_pred             HHHHHcCCEEEEECcch-hcccccCccCCCCC---CCcEEEecCCcCCCCCCceEEEeCCHHHHHHHHHHhCccccCC-c
Confidence            47999999999999975 33332211111112   26776  7899884  3666654 2 33321    11112222 1


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+..++...+.++.+++  +++.++++++.+++++.|+++
T Consensus       262 ~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  302 (416)
T PRK00011        262 LMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER  302 (416)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            122233333444444432  356778899999999999875

>PRK06225 aspartate aminotransferase; Provisional

Probab=98.33  E-value=8.4e-07  Score=67.86  Aligned_cols=104  Identities=15%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---ccccc-cccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||+++|+||++..|. .+...... ...+...++.+|+|.+| .|   |++.. +.+.........++++.|+++
T Consensus       184 ~~a~~~~~~ii~De~y~~~~-~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~~~~~~~~~~  261 (380)
T PRK06225        184 EIARDNDAFLLHDCTYRDFA-REHTLAAE-YAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDLGTNVIA  261 (380)
T ss_pred             HHHHHCCcEEEEehhHHHHh-ccCCchhh-cCCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHhcccCCCHHH
Confidence            46899999999999987652 22211111 11111144669999996 33   45443 233322112223456778888


Q ss_pred             HHHHHHHHHHHhhhcHHHHH----HHHHHHHHHHHHh
Q psy4800          76 VLLLKGIIDTIHNENLLDRV----QKTGDILLNVRLG  108 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~----~~~g~~l~~~L~~  108 (119)
                      .+++.+.|+..  .++.+++    +++-+.+.+.|++
T Consensus       262 ~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~  296 (380)
T PRK06225        262 QEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAVDE  296 (380)
T ss_pred             HHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88777777542  2233333    3444455555554

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=98.27  E-value=1.8e-06  Score=64.85  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccc-c-cccc-------ccc---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLK-P-EFVP-------QQA---   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~-~-~~~~-------~~~---   62 (119)
                      ++|++||+++|+|++|+ +|....   ....+..  .|+.+++    |.++  .||++.. + .+.+       ...   
T Consensus       127 ~l~~~~~i~li~D~a~~-~g~~~~---~~~~~~~--~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  200 (352)
T cd00616         127 AIAKRHGLPVIEDAAQA-LGATYK---GRKVGTF--GDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRD  200 (352)
T ss_pred             HHHHHcCCeEEEECCCC-CCCeEC---CEEcccC--cceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCC
Confidence            47999999999999986 332211   1122322  6777776    9995  3565543 2 2211       000   


Q ss_pred             ------cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ------YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ------~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                            .....++..+++.++.++..++.+  ++..++.+++.+++++.|+++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~  251 (352)
T cd00616         201 RFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADL  251 (352)
T ss_pred             CCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCC
Confidence                  011234567888888888777666  346677889999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.25  E-value=1.3e-06  Score=64.91  Aligned_cols=106  Identities=13%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc---cCcccc-ccccccc----cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ---LGGYFL-KPEFVPQ----QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg---~gG~~~-~~~~~~~----~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|...-..+...-......  ..|++  ++.|.++   .||++. .+.....    .....+.|.+
T Consensus       177 ~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~--~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~tts  254 (294)
T cd00615         177 EEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA--GADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQSTS  254 (294)
T ss_pred             HHHHhcCCeEEEECcchhhhccCcccCcchhhc--CCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHHCCCC
Confidence            479999999999999864211111100011111  26877  7889985   133332 2221110    1112233436


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+.+.+++..++++++.+  +++.+++.++.++++++|++
T Consensus       255 ps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~~  294 (294)
T cd00615         255 PSYLILASLDVARAMMALEGKELVEELIELALYARQEINK  294 (294)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence            677778888888888754  35777888888888887753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=98.24  E-value=4.3e-06  Score=63.02  Aligned_cols=107  Identities=10%  Similarity=0.072  Sum_probs=55.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||++.++-.....  ....+.. ..+|+  +|+|.+| .|   |++..+ .+.+... ...+++..++
T Consensus       152 ~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~-~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~-~~~~~~~~s~  227 (330)
T TIGR01140       152 ARLRARGGWLVVDEAFIDFTPDASL--APQAARF-PGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLR-EALGPWTVNG  227 (330)
T ss_pred             HHhHhcCCEEEEECcccccCCccch--hhHhccC-CCEEEEEecchhhcCchhhhhheeCCHHHHHHHH-hcCCCCCchH
Confidence            3688999999999999876322111  1111211 12343  8999996 33   555432 2322111 1122345566


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      ++.+++.+.+   +++++.+++++.-+..++.+.+..++++
T Consensus       228 ~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~~  265 (330)
T TIGR01140       228 PARAAGRAAL---ADTAWQAATRARLAAERARLAALLARLG  265 (330)
T ss_pred             HHHHHHHHHH---hchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6665555544   4444544444444444555544444444

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=98.20  E-value=1e-05  Score=62.56  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=60.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcccccccccc-ccccce-------ee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFLKPEFVP-QQAYRV-------FN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~~~~~~~-~~~~~~-------~~   67 (119)
                      ++|++||+++++|++|+ +|...  .  ...+..  +|+++++  |.+|   .|++++.+.... ..+...       +.
T Consensus       166 ~l~~~~g~~livD~a~a-~g~~~--~--~~~~~~--~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~  238 (402)
T TIGR02006       166 EICRERKVFFHVDAAQS-VGKIP--I--NVNELK--VDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMR  238 (402)
T ss_pred             HHHHHcCCEEEEEcchh-cCCcc--c--CccccC--CCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCccCCcc
Confidence            47999999999999985 43321  1  112333  8999999  9775   233334432211 111111       11


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ....+...+.+..++++.+++.  ...++.+++.+++++.|+++
T Consensus       239 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~  282 (402)
T TIGR02006       239 SGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI  282 (402)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            2234566666667888887642  34566777778888877654

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=98.18  E-value=3.7e-06  Score=63.49  Aligned_cols=106  Identities=15%  Similarity=0.228  Sum_probs=57.9

Q ss_pred             hhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---ccccccc-cccccccceeeccCCC
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKPE-FVPQQAYRVFNTWMGD   72 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~~-~~~~~~~~~~~T~~~~   72 (119)
                      +|++|++++|+||++..+ ..+.. +......+...++++   +|+|.+| .|   |++.... +.+.... ...++..+
T Consensus       176 ~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~-~~~~~~~~  253 (363)
T PF00155_consen  176 LAREYNIIIIVDEAYSDL-IFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRR-FQRSGLSS  253 (363)
T ss_dssp             HHHHTTSEEEEEETTTTG-BSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHH-HHHHTTSS
T ss_pred             hhcccccceeeeeceecc-ccCCCccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhh-cccccccc
Confidence            599999999999998765 33321 111122222224533   8999997 56   6766432 3322111 11222335


Q ss_pred             HHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN-----ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~-----~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .....++.+.+.--..     ++..++++++-+++.+.|++.
T Consensus       254 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  295 (363)
T PF00155_consen  254 SPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI  295 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh
Confidence            5555555554443321     245556677777777777654

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=98.17  E-value=5.3e-06  Score=63.45  Aligned_cols=97  Identities=18%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800           6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL   77 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a   77 (119)
                      +++++|+||+...|+..|......  ..  .|+++   +|||.+| .|   |+++.+ .+..... ....+++.++++..
T Consensus       186 ~~~~lI~DE~y~~~~~~~~~~~~~--~~--~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~-~~~~~~~~s~~~q~  260 (369)
T PRK08153        186 ETTLLVLDEAYCETAPAGAAPPID--TD--DPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFD-KVRNHFGMNRIAQA  260 (369)
T ss_pred             CCcEEEEeCchhhhcCcccchhhh--hc--CCCEEEEecchHhccCcchheeeeecCHHHHHHHH-HhhcCCCCCHHHHH
Confidence            489999999987665433221111  11  24543   9999997 45   666543 2322100 11134567888888


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          78 LLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        78 ~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      ++.++|+   ++++.+++++..+..++.+.+..
T Consensus       261 ~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L  290 (369)
T PRK08153        261 AALAALK---DQAYLAEVVGKIAAARDRIAAIA  290 (369)
T ss_pred             HHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888874   44555555555555555554443

>PRK07324 transaminase; Validated

Probab=98.17  E-value=5e-06  Score=63.75  Aligned_cols=82  Identities=18%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||++.++...+.....  .... ....+-+|||.+| .|   |+++.+ .+.+. ......+++..++
T Consensus       180 ~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~~~  257 (373)
T PRK07324        180 EIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGV  257 (373)
T ss_pred             HHHHHCCCEEEEEccccccccCCCCCCh--hhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEecCCh
Confidence            4789999999999998876332321111  1111 0022338999986 44   665543 23321 1222344556677


Q ss_pred             HHHHHHHHHHH
Q psy4800          74 GKVLLLKGIID   84 (119)
Q Consensus        74 ~~~a~a~a~l~   84 (119)
                      ++..++..+|+
T Consensus       258 ~~q~~a~~~l~  268 (373)
T PRK07324        258 FDDMLASLALE  268 (373)
T ss_pred             HHHHHHHHHHc
Confidence            77777766664

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=98.17  E-value=8.3e-06  Score=62.81  Aligned_cols=103  Identities=11%  Similarity=0.035  Sum_probs=59.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc---Cccccc-ccccc----ccccce------e
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL---GGYFLK-PEFVP----QQAYRV------F   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~---gG~~~~-~~~~~----~~~~~~------~   66 (119)
                      ++|++||+++|+|++|. +|.....  ...++++  ..+.++.|++++   .|++.. +.+.+    ..+.+.      +
T Consensus       182 ~la~~~g~~livD~a~~-~g~~~~~--~~~~g~D--~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~  256 (387)
T PRK09331        182 KVAHEYGIPFLLNGAYT-VGRMPVD--GKKLGAD--FIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELL  256 (387)
T ss_pred             HHHHHcCCEEEEECCcc-cCCcCCC--HHHcCCC--EEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeee
Confidence            47999999999999975 4433322  1234433  344488999852   255543 22221    111111      1


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++ +.++....+.+++++.+.+. +..++..++.+++++.|+++
T Consensus       257 ~~-~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l  299 (387)
T PRK09331        257 GC-TLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKI  299 (387)
T ss_pred             ce-ecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            21 23444555666777766542 44566677888999999877

>PRK06108 aspartate aminotransferase; Provisional

Probab=98.16  E-value=3.5e-06  Score=64.19  Aligned_cols=108  Identities=21%  Similarity=0.225  Sum_probs=58.6

Q ss_pred             ChhhhhCCEEEEccccccccCC-CcchhhhhcCCCC-CCC-E--EEEchhhc-cC---cccccc-ccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPC-GKFWCHEHFDLEE-SPD-I--VTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~-G~~~~~~~~g~~~-~pD-i--~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~   69 (119)
                      ++|++||+++|+||++..+-.. +... .....+.. .+. +  .+|+|.+| .|   |++..+ .+.+. .....++++
T Consensus       185 ~~~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~~  263 (382)
T PRK06108        185 AHCRRHGLWIVADEVYERLYYAPGGRA-PSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTS  263 (382)
T ss_pred             HHHHHCCcEEEEehhhhhhccCCCCCC-CCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhccc
Confidence            4789999999999998865221 1110 00112211 122 2  28999886 34   555543 23221 111223455


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+++...++.++|+.-.+  ++.+++++++-+++.+.|+++
T Consensus       264 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (382)
T PRK06108        264 CVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRAL  305 (382)
T ss_pred             CCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6678877777777753211  234555666666666666554

>TIGR01814 kynureninase kynureninase

Probab=98.10  E-value=1.3e-05  Score=61.92  Aligned_cols=102  Identities=15%  Similarity=0.071  Sum_probs=60.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc---cCcccccc-ccccccc---cce------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ---LGGYFLKP-EFVPQQA---YRV------   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg---~gG~~~~~-~~~~~~~---~~~------   65 (119)
                      ++|++||+++++|++|+ +|..-  .-.+..+    +|++  +.-|.|+   ++|+++.. .+....+   ..+      
T Consensus       195 ~~~~~~g~~~~vD~aq~-~G~~~--id~~~~g----vD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~  267 (406)
T TIGR01814       195 RAAHAKGALVGFDLAHA-VGNVP--LDLHDWG----VDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPT  267 (406)
T ss_pred             HHHHHcCCEEEEEcccc-cCCcc--cccccCC----CCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCcc
Confidence            47999999999999986 44331  2223344    5555  7789873   23333322 1111000   000      


Q ss_pred             --------------eeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 --------------FNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 --------------~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                    +.+...|..++++..++|+++++.   ...++.+.+.+++++.|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  328 (406)
T TIGR01814       268 RFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKAR  328 (406)
T ss_pred             ccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence                          001123556788888899998653   46677888888888888764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=98.10  E-value=1.7e-05  Score=59.95  Aligned_cols=102  Identities=11%  Similarity=0.004  Sum_probs=62.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCccc-ccccccc---ccccce-------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYF-LKPEFVP---QQAYRV-------   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~-~~~~~~~---~~~~~~-------   65 (119)
                      ++|++||+++|+|++|. +|..-  .-.+  ..  .+|+++++  |.+|  +.|+. .++....   ..+...       
T Consensus       162 ~l~~~~~~~~ivD~a~~-~g~~~--~~~~--~~--~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~  234 (353)
T TIGR03235       162 EVLEAHEAFFHVDAAQV-VGKIT--VDLS--AD--RIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERG  234 (353)
T ss_pred             HHHHHcCCEEEEEchhh-cCCcc--cccc--cc--CCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCCCcCc
Confidence            47999999999999975 44331  1111  11  28999877  9875  22443 3433211   111111       


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.....|+....+..++++.+.+  ++..++.+++.+++++.|++.
T Consensus       235 ~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~  280 (353)
T TIGR03235       235 LRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL  280 (353)
T ss_pred             cccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Confidence            11224566777778888888753  356678888889999888653

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK07682 hypothetical protein; Validated

Probab=98.09  E-value=6.8e-06  Score=62.76  Aligned_cols=109  Identities=13%  Similarity=0.101  Sum_probs=60.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCCC-CCCCEEEEchhhc-cC---cccccc-cccccc-ccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~~   72 (119)
                      ++|++|++++|+||++..+...+..- .....+.. ...-+.+|||.++ .|   |++..+ .+.+.. .....+++..+
T Consensus       181 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~~  260 (378)
T PRK07682        181 VIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAP  260 (378)
T ss_pred             HHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCCC
Confidence            47999999999999988664333211 11111221 0012348999986 45   666543 233221 11113344566


Q ss_pred             HHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++..++.+.|+--+  -.+.+++++++-+++.+.|+++
T Consensus       261 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  299 (378)
T PRK07682        261 TMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI  299 (378)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            777776766664311  1234455667777777777765

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=98.07  E-value=7.2e-06  Score=62.99  Aligned_cols=102  Identities=17%  Similarity=0.150  Sum_probs=55.3

Q ss_pred             ChhhhhCCEEEEcccc-ccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccc-c-ccccc----cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQ-TGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLK-P-EFVPQ----QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~-tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~-~-~~~~~----~~~~~~~T~   69 (119)
                      ++|++||+++|+||+| .|+--.|..  ..... .  +|++  +++|+++  .||+++. + .+.+.    ......++ 
T Consensus       183 ~l~~~~~~~li~D~a~~~g~~~~g~~--~~~~~-~--~dv~~~s~sK~l~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~-  256 (402)
T cd00378         183 EIADEVGAYLLVDMAHVAGLVAGGVF--PNPLP-G--ADVVTTTTHKTLRGPRGGLILTRKGELAKKINSAVFPGLQGG-  256 (402)
T ss_pred             HHHHhcCCEEEEEccchhhhhhcccC--CCccc-C--CcEEEeccccCCCCCCceEEEeccHHHHHHHHHHhCccccCC-
Confidence            4799999999999997 343111211  11111 2  6766  7889883  3555543 3 33321    11122222 


Q ss_pred             CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                       .++...+++..++..+.+   ++..++++++.+++++.|+++
T Consensus       257 -~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  298 (402)
T cd00378         257 -PHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER  298 (402)
T ss_pred             -chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             122333333334443322   356677888888999988775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=98.03  E-value=1.7e-05  Score=59.51  Aligned_cols=102  Identities=16%  Similarity=0.267  Sum_probs=61.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cC-ccccc-cccccc----cccce-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LG-GYFLK-PEFVPQ----QAYRV-----   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~g-G~~~~-~~~~~~----~~~~~-----   65 (119)
                      ++|++|++++|+|++++ +|..  .+....++    +|++  +++|+++  .| |++.. +.+.+.    .....     
T Consensus       149 ~l~~~~~~~livD~~~s-~g~~--~~~~~~~~----~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~  221 (355)
T TIGR03301       149 KVARSHGAVLIVDAMSS-FGAI--PIDIEELD----VDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYD  221 (355)
T ss_pred             HHHHHcCCEEEEEeccc-cCCc--ccchhhcC----ccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHH
Confidence            47999999999999865 5432  22222333    5654  8999873  12 44432 222111    01100     


Q ss_pred             ---------eeccCCCHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHhh
Q psy4800          66 ---------FNTWMGDPGKVLLLKGIIDTIHNEN----LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ---------~~T~~~~p~~~a~a~a~l~~i~~~~----~~~~~~~~g~~l~~~L~~l  109 (119)
                               ...|..++....++.++++.+.+++    ..++.+++.+++++.|+++
T Consensus       222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~  278 (355)
T TIGR03301       222 QWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL  278 (355)
T ss_pred             HHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc
Confidence                     1133467777788888898875432    4556778888888888765

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK02948 cysteine desulfurase; Provisional

Probab=98.03  E-value=2.3e-05  Score=59.81  Aligned_cols=102  Identities=16%  Similarity=-0.000  Sum_probs=63.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccc-ccccc--ccc----ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFL-KPEFV--PQQ----AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~-~~~~~--~~~----~~~~~~T~   69 (119)
                      ++|++||+++++|++|+ +|....-  .+.++    .|++  ++.|.+|  +-|+.. .+.+.  ...    ...-+..+
T Consensus       162 ~l~~~~~~~vivD~~~~-~g~~~~~--~~~~~----~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~  234 (381)
T PRK02948        162 ALLKKYNVLFHSDCVQT-FGKLPID--VFEMG----IDSLSVSAHKIYGPKGVGAVYINPQVRWKPVFPGTTHEKGFRPG  234 (381)
T ss_pred             HHHHHcCCEEEEEChhh-ccccccC--cccCC----CCEEEecHHhcCCCCcEEEEEEcCCCCCCCcccCCCCCCCcCCC
Confidence            47999999999999864 6543221  22222    6776  7889876  224433 33321  100    00111223


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..|+.+.+++.++++.+.+  ++..++++++.+++++.|+++
T Consensus       235 t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  276 (381)
T PRK02948        235 TVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL  276 (381)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5678888888888887643  356678889999999998875

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=97.96  E-value=1.8e-05  Score=59.86  Aligned_cols=100  Identities=13%  Similarity=0.034  Sum_probs=51.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchh-hhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~   74 (119)
                      ++|+++|+++|+||++.+|. .+..-. ...++-.  .-+-+|+|.+| .|   |++..+ .+..... ....++..+++
T Consensus       182 ~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~v--i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~-~~~~~~~~~~~  257 (361)
T PRK00950        182 KILESTDALVFVDEAYVEFA-EYDYTPLALEYDNL--IIGRTFSKVFGLAGLRIGYGFVPEWLIDYYM-RAKTPFSLTRL  257 (361)
T ss_pred             HHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCE--EEEEeehHhhcCchhhcchhcCCHHHHHHHH-HhcCCCCCCHH
Confidence            47899999999999998763 111111 1111100  22338999997 44   666543 2322110 01123345677


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL  107 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~  107 (119)
                      +.+++.++++   +.++.++..+..+..++.|.
T Consensus       258 ~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~  287 (361)
T PRK00950        258 SQAAAIAALS---DKEYIEKSIEHGIKSREYLY  287 (361)
T ss_pred             HHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence            6666666553   34444444444444444443

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=97.95  E-value=5.7e-05  Score=57.33  Aligned_cols=102  Identities=18%  Similarity=0.159  Sum_probs=57.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCccccc-cccccccccc-----------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLK-PEFVPQQAYR-----------   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~-~~~~~~~~~~-----------   64 (119)
                      ++|++||+++++|++++ +|...  ....  .+.  +|+++++  |.++  +.|++.. +.+.+.....           
T Consensus       163 ~~~~~~~~~li~D~a~~-~~~~~--~~~~--~~~--~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~  235 (373)
T cd06453         163 EIAHEAGVPVLVDGAQS-AGHMP--VDVQ--DLG--CDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVS  235 (373)
T ss_pred             HHHHHcCCEEEEEhhhh-cCcee--eecc--ccC--CCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccccc
Confidence            47999999999999975 33321  1111  223  8999888  9986  2355432 2221110000           


Q ss_pred             -----------eeeccCCCHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800          65 -----------VFNTWMGDPGKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l  109 (119)
                                 -+.+...|..+..+..++++.+.+++   ..++.+++.+++++.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~  294 (373)
T cd06453         236 FEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEI  294 (373)
T ss_pred             ccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC
Confidence                       01111234445556666788877543   4555667777777777664

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=97.92  E-value=6.3e-05  Score=57.81  Aligned_cols=102  Identities=16%  Similarity=0.058  Sum_probs=58.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccc-ccccccccccc-----------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFL-KPEFVPQQAYR-----------   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~-~~~~~~~~~~~-----------   64 (119)
                      ++|++||+++++|++|. +|.. .. ..  ....  +|+++++  |.+|  +-|++. .+.+.+..+..           
T Consensus       181 ~~~~~~~~~~ivD~a~~-~~~~-~~-~~--~~~~--~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T TIGR03392       181 TLAHQYGAVVVVDGAQG-VVHG-PP-DV--QALD--IDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVS  253 (398)
T ss_pred             HHHHHcCCEEEEEhhhh-cCCC-CC-Ch--hhcC--CCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeecc
Confidence            47999999999999985 3322 11 11  1223  8999988  9776  224443 22221111100           


Q ss_pred             -----------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 -----------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                 -+.+-..|..+..+..++++.+++.   +..++.+++.+++++.|+++
T Consensus       254 ~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l  312 (398)
T TIGR03392       254 FDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQL  312 (398)
T ss_pred             ccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence                       0011124455777888888888654   34456666777777777654

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=97.89  E-value=3.9e-05  Score=58.10  Aligned_cols=103  Identities=15%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             ChhhhhCCEEEEcccccccc----CCCcchhhhhcCCCCCCCEEEE--chhh----ccCccccccc-cccc---cccc--
Q psy4800           1 MYEKYHGSALLIDEVQTGGG----PCGKFWCHEHFDLEESPDIVTF--SKKM----QLGGYFLKPE-FVPQ---QAYR--   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G----r~G~~~~~~~~g~~~~pDi~t~--gK~l----g~gG~~~~~~-~~~~---~~~~--   64 (119)
                      ++|++||+++++||+|+++.    +.+..+.....    ..|.+++  -|.+    +.|+++..+. +.+.   ..++  
T Consensus       175 ~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~----~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~  250 (371)
T PRK13520        175 KIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP----GVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLT  250 (371)
T ss_pred             HHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC----CCceEEECCccccCccCCceEEEEcCHHHHHhhcccCcccc
Confidence            47999999999999997542    11111111111    2566543  2432    1233443322 2211   1111  


Q ss_pred             ------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 ------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                            +..|.  ++..++++.++|+.+.++   +..++..++.++|++.|+++
T Consensus       251 ~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~  302 (371)
T PRK13520        251 SKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER  302 (371)
T ss_pred             CCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence                  11232  334577788889887654   36677888999999988875

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=97.89  E-value=9.5e-06  Score=62.22  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=60.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccc-cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQA-YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~-~~~~~T~~   70 (119)
                      ++|++||+++|+||++. .+...     ......  +|++  +++|.+++     +|+++. + .+.+... ........
T Consensus       149 ~la~~~g~~livD~t~~-~~~~~-----~~~~~g--~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~  220 (369)
T cd00614         149 ELAHEHGALLVVDNTFA-TPYLQ-----RPLELG--ADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTI  220 (369)
T ss_pred             HHHHHcCCEEEEECCCc-chhcC-----ChhhhC--CcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCC
Confidence            47999999999999964 22111     112222  7887  89999952     455554 2 3322111 11112235


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..+.+++..|+.+.  ...++..++.+++.+.|++.
T Consensus       221 ~~p~~a~~~l~~l~tl~--~r~~~~~~na~~la~~L~~~  257 (369)
T cd00614         221 LSPFDAWLLLRGLKTLP--LRMERHSENALKVAEFLEKH  257 (369)
T ss_pred             CCHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHHHHHcC
Confidence            77888877766665442  35677788888888888764

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK06460 hypothetical protein; Provisional

Probab=97.88  E-value=2.2e-05  Score=60.58  Aligned_cols=98  Identities=21%  Similarity=0.163  Sum_probs=56.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~-~~~~~~T~~~   71 (119)
                      ++|++||+++|+||++... ....     .....  .|++  +++|.+++     +|++..+ .+.+.. ......+...
T Consensus       154 ~la~~~g~~vivDea~~~~-~~~~-----~l~~~--~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~  225 (376)
T PRK06460        154 KVCKENGSILIVDATFSTP-INQK-----PLELG--ADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSL  225 (376)
T ss_pred             HHHHHcCCEEEEECCcCcc-ccCC-----hhhcC--CCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCC
Confidence            4799999999999997521 1111     11112  5776  89999952     4666543 232211 1111112245


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +|..+..++..++.++  ...+++.++.+++.+.|++
T Consensus       226 ~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L~~  260 (376)
T PRK06460        226 DPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFLEG  260 (376)
T ss_pred             CHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHc
Confidence            6766655556666554  3456677777777777775

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=97.86  E-value=0.00011  Score=55.86  Aligned_cols=102  Identities=19%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc----cCcccccccc--ccccc------cc--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ----LGGYFLKPEF--VPQQA------YR--   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~--~~~~~------~~--   64 (119)
                      ++|++||+++|+|++|+ +|....  ..+..    .+|+++++  |.++    .|++++++..  .....      ..  
T Consensus       161 ~l~~~~~~~livD~a~~-~g~~~~--~~~~~----~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~  233 (376)
T TIGR01977       161 ELAQENGIFFILDAAQT-AGVIPI--DMTEL----AIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALI  233 (376)
T ss_pred             HHHHHcCCEEEEEhhhc-cCccCC--Cchhc----CCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccc
Confidence            47999999999999974 544321  11222    27887555  9873    2234443321  11000      00  


Q ss_pred             --------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 --------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 --------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                              -+.....+...+.+..++++.+.+.   ...++.+++.+++++.|+++
T Consensus       234 ~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~  289 (376)
T TIGR01977       234 DQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREI  289 (376)
T ss_pred             cccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence                    0111134566677777889988764   45677888888888888754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=97.86  E-value=2.8e-05  Score=58.55  Aligned_cols=103  Identities=14%  Similarity=0.090  Sum_probs=56.8

Q ss_pred             hhhhh--CCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCC
Q psy4800           2 YEKYH--GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMG   71 (119)
Q Consensus         2 l~~~~--~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~   71 (119)
                      +|+.+  ++++|+||++..+...+...  ......  ++++   +++|.+| .|   |++..+ .+.+.... ..+++..
T Consensus       167 l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~--~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~-~~~~~~~  241 (346)
T TIGR01141       167 VLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEY--PNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNK-VRAPFNL  241 (346)
T ss_pred             HHHhCCCCcEEEEECchhhhcCCccHH--HHHhhC--CCEEEEehhhHhhhchhhhceeeecCHHHHHHHHh-ccCCCCC
Confidence            45555  99999999988664322211  112222  4544   7899996 33   554432 23221111 1234566


Q ss_pred             CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++..++.+.++... -.+.+++++++-+++++.|+++
T Consensus       242 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  280 (346)
T TIGR01141       242 SRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL  280 (346)
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7888887777665432 1234455666666677776654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=97.84  E-value=0.00014  Score=55.46  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=56.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc--Cccc-cccccccccccce-------eec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL--GGYF-LKPEFVPQQAYRV-------FNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~--gG~~-~~~~~~~~~~~~~-------~~T   68 (119)
                      ++|++||+++++|++|+ +|..  ..  ......  +|+++++  |-+|.  -|+. +..... ..+...       ...
T Consensus       160 ~l~~~~g~~vivD~~~~-~g~~--~~--~~~~~~--~D~~~~s~~K~~gp~G~g~l~v~~~~~-~~p~~~g~~~~~~~~~  231 (379)
T TIGR03402       160 EIAKERGALFHTDAVQA-VGKI--PI--DLKEMN--IDMLSLSGHKLHGPKGVGALYIRKGTR-FRPLLRGGHQERGRRA  231 (379)
T ss_pred             HHHHHcCCEEEEECccc-cccc--cc--CcccCC--CCEEEEcHHHcCCCCceEEEEECCCCC-CCCcccCCccCCCcCC
Confidence            47999999999999985 4322  11  111233  8999999  94431  1222 222221 011110       112


Q ss_pred             cCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~  108 (119)
                      ...|..+..+..++++++.+.  +..++.+++.+++++.|++
T Consensus       232 gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~  273 (379)
T TIGR03402       232 GTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA  273 (379)
T ss_pred             CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            234566677777888887542  3345666777777777764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=97.83  E-value=9.6e-05  Score=57.06  Aligned_cols=102  Identities=19%  Similarity=0.163  Sum_probs=60.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccc-cccccccccc------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFL-KPEFVPQQAY------------   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~-~~~~~~~~~~------------   63 (119)
                      ++|++||+++++|++|. +|..-  .-.+  ...  +|+++++  |.+|  +-|+.. .+.+.+..++            
T Consensus       188 ~~~~~~~~~vivD~a~~-~g~~~--~~~~--~~~--~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~  260 (406)
T PRK09295        188 ALAHQHGAKVLVDGAQA-VMHHP--VDVQ--ALD--CDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVS  260 (406)
T ss_pred             HHHHHcCCEEEEEcccc-cCccc--cCch--hcC--CCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeee
Confidence            47999999999999984 44321  1111  122  7998766  9665  223332 2222110000            


Q ss_pred             -----------ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          64 -----------RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 -----------~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                 .-+.+-..|..+..+..++++.+.+.   ...++.+++.+++++.|+++
T Consensus       261 ~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~  320 (406)
T PRK09295        261 LTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESV  320 (406)
T ss_pred             cCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence                       00112135677888889999998763   45567777888888877654

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=97.83  E-value=9.3e-05  Score=56.70  Aligned_cols=102  Identities=13%  Similarity=0.083  Sum_probs=56.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccc-cccccc----ccccceee-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFL-KPEFVP----QQAYRVFN-----   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~-~~~~~~----~~~~~~~~-----   67 (119)
                      ++|++||+++|+||+|. .|. +.. -...++    +|++  ++.|.+| ..|+.. .+.+.+    ....+.++     
T Consensus       180 ~~~~~~~~~~ivD~a~~-~~~-~~~-~~~~~~----~d~~~~s~~K~~g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~  252 (397)
T TIGR01976       180 ELVHAAGALVVVDAVHY-APH-GLI-DVQATG----ADFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLTFSYDTGPER  252 (397)
T ss_pred             HHHHHcCCEEEEehhhh-ccc-cCC-CHHHcC----CCEEEEechhhcCCceEEEEEcHHHHhhCCCccccCccCCCcch
Confidence            47999999999999985 321 111 112222    7876  7889986 345544 322221    11111111     


Q ss_pred             --ccCCCHHHHHHHHHHHHHHhhhc-----------------HHHHHHHHHHHHHHHHHhh
Q psy4800          68 --TWMGDPGKVLLLKGIIDTIHNEN-----------------LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 --T~~~~p~~~a~a~a~l~~i~~~~-----------------~~~~~~~~g~~l~~~L~~l  109 (119)
                        +-..|....++..++++.+.+.+                 ..++..++.+++++.|+++
T Consensus       253 ~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~  313 (397)
T TIGR01976       253 FELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDL  313 (397)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence              11234556666777888775432                 2344556677777777654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=97.82  E-value=4.2e-05  Score=57.66  Aligned_cols=102  Identities=16%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      +|+++++++|.||+...+-.....   .  .+...+.++   +|||++| .|   ||++.+ .+.+.... ...++..++
T Consensus       152 ~~~~~~~~iI~DE~y~~~~~~~s~---~--~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~-~~~~~~~~~  225 (330)
T PRK05664        152 RLAARGGWLVVDEAFMDNTPQHSL---A--ACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAE-LLGPWTVSG  225 (330)
T ss_pred             HHHhcCCEEEEECCcccCCCcccc---c--ccccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHH-hcCCCCCCH
Confidence            578999999999998655211111   1  111113433   9999997 56   777653 23321111 112334566


Q ss_pred             HHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++..++.++|+-.. .+..+++++++-+++.+.|++.
T Consensus       226 ~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        226 PTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH  262 (330)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66666666665322 1234555666666777777664

>PRK05764 aspartate aminotransferase; Provisional

Probab=97.79  E-value=4.2e-05  Score=58.58  Aligned_cols=108  Identities=17%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhc--CCCCCCCEE--EEchhhc-cC---cccccc-ccccccccc-eeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHF--DLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQAYR-VFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~--g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~~~~-~~~T~   69 (119)
                      ++|++||+++|+||++..+.-.|.. ......  +.. ..+++  +|+|.++ .|   |++..+ .+....... ...+.
T Consensus       191 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~  269 (393)
T PRK05764        191 DVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELR-DRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHSTS  269 (393)
T ss_pred             HHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCc-CCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhccc
Confidence            4689999999999998654211221 111111  111 12233  7999986 44   555432 232211111 12233


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++++..++.+.|+...+  .+++++.+++.+++++.|+++
T Consensus       270 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (393)
T PRK05764        270 NPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI  311 (393)
T ss_pred             CCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            5677777777777652111  134445556666666766654

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=97.79  E-value=9.7e-05  Score=56.08  Aligned_cols=102  Identities=15%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cC-ccccc-cccccc----cccce-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LG-GYFLK-PEFVPQ----QAYRV-----   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~g-G~~~~-~~~~~~----~~~~~-----   65 (119)
                      ++|++||+++|+|++|+ +|...  .-...+  .  +|++  ++.|+|+  .| |++.. ....+.    .....     
T Consensus       153 ~l~~~~g~~livD~~~~-~g~~~--~~~~~~--~--~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~  225 (363)
T TIGR02326       153 KLAHRHGKVTIVDAMSS-FGGIP--IDIAEL--H--IDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYD  225 (363)
T ss_pred             HHHHHcCCEEEEEcccc-ccCcc--cchhhc--C--ccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHH
Confidence            47999999999999975 55332  222222  2  7776  7889883  23 55432 222110    00000     


Q ss_pred             ----------eeccCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 ----------FNTWMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ----------~~T~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                                ...|..++....+..++++.+.++    +..++++++.+++++.|+++
T Consensus       226 ~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~  283 (363)
T TIGR02326       226 QWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL  283 (363)
T ss_pred             HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence                      012345667777778888877543    35567888888898888766

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=97.75  E-value=3.1e-05  Score=59.71  Aligned_cols=97  Identities=15%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-cccc-eeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-QAYR-VFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~~~~-~~~T~~   70 (119)
                      ++|++||+++|+||++... .....     ....  +|++  +++|.+++     ||+++.+ .+.+. .... ..++ .
T Consensus       163 ~la~~~gi~livD~a~~~~-~~~~p-----l~~g--~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~-~  233 (380)
T TIGR01325       163 ELAHAIGALLVVDNVFATP-VLQQP-----LKLG--ADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGP-A  233 (380)
T ss_pred             HHHHHcCCEEEEECCCccc-ccCCc-----hhhC--CCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCC-C
Confidence            4799999999999997521 11111     1222  7888  58999853     3554432 22221 1111 1122 3


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+..++..++.+..  ..++..++.+.+.+.|++
T Consensus       234 ~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L~~  269 (380)
T TIGR01325       234 MSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWLQA  269 (380)
T ss_pred             CCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHc
Confidence            567777777777766653  445566666677666654

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=97.74  E-value=9.4e-05  Score=56.17  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             hCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHH
Q psy4800           6 HGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKV   76 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~   76 (119)
                      +++++|+||++..+...+. .......+..  ++++   +|+|.+| .|   |+...+ .+.+.... ...++..++++.
T Consensus       185 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~-~~~~~~~~~~~~  261 (367)
T PRK02731        185 PDVLVVLDEAYAEYVRRKDYEDGLELVAKF--PNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNR-VRQPFNVNSLAL  261 (367)
T ss_pred             CCcEEEEECcHHHhccCcCcccHHHHHhhc--CCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHH-ccCCCCCCHHHH
Confidence            4999999999875433221 1122223322  4555   8999986 44   565543 23221110 112345567777


Q ss_pred             HHHHHHHHHHhhhcHHHHH----HHHHHHHHHHHHh
Q psy4800          77 LLLKGIIDTIHNENLLDRV----QKTGDILLNVRLG  108 (119)
Q Consensus        77 a~a~a~l~~i~~~~~~~~~----~~~g~~l~~~L~~  108 (119)
                      .++.+.|+   ++++.+++    +++-+++++.|++
T Consensus       262 ~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~  294 (367)
T PRK02731        262 AAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAE  294 (367)
T ss_pred             HHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666654   33333333    4444445555544

>PRK07777 aminotransferase; Validated

Probab=97.73  E-value=6.8e-05  Score=57.51  Aligned_cols=108  Identities=17%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|++|++++|+||++..+--.+..  ...+..+.. ..+++  +|+|.+| .|   |++..+ .+.+. .......++.
T Consensus       186 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~  264 (387)
T PRK07777        186 ELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMR-ERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTYV  264 (387)
T ss_pred             HHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCc-CcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccC
Confidence            4789999999999998765211211  111111111 12333  8999996 34   555432 23221 1111222333


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+++...++...++.-++  +..++.++++.+++.+.|++.
T Consensus       265 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (387)
T PRK07777        265 GGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA  305 (387)
T ss_pred             CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333333333333332111  234556777778888888764

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=97.73  E-value=9.7e-05  Score=56.00  Aligned_cols=108  Identities=12%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC---CCCCEEEEc--hhh----ccCccccc-cccccc---ccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE---ESPDIVTFS--KKM----QLGGYFLK-PEFVPQ---QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~---~~pDi~t~g--K~l----g~gG~~~~-~~~~~~---~~~~~~   66 (119)
                      ++|++||+++|+||+|.++ ..+.. +.....+++   ...|.++++  |.+    +.|+++.. ..+.+.   ..+++.
T Consensus       177 ~l~~~~~~~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~  255 (373)
T TIGR03812       177 KIALENGIYLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLT  255 (373)
T ss_pred             HHHHHcCCeEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCcccC
Confidence            4799999999999998643 11100 000111111   024665542  632    13344432 222211   112211


Q ss_pred             e------ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          67 N------TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~------T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .      +...++..++++.++|+.+.++   +..+++.++.++|++.|+++
T Consensus       256 ~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~  307 (373)
T TIGR03812       256 VKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI  307 (373)
T ss_pred             CCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            1      1134556788888999988654   46678889999999999876

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=97.71  E-value=0.0003  Score=54.15  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccc-cccccccccc------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFL-KPEFVPQQAY------------   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~-~~~~~~~~~~------------   63 (119)
                      ++|++||+++|+|++|. +|..-  ...+  .+.  +|+++++  |.+|  +-|+.. .+.+.+....            
T Consensus       184 ~l~~~~g~~~ivD~a~~-~g~~~--~~~~--~~~--~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~  256 (401)
T PRK10874        184 TLAHQAGMVVMVDGAQG-AVHFP--ADVQ--ALD--IDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVS  256 (401)
T ss_pred             HHHHHcCCEEEEECCcc-ccccc--CCch--hcC--CCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeec
Confidence            47999999999999975 33221  1111  223  8988766  9776  224433 2222211000            


Q ss_pred             ----------ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          64 ----------RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 ----------~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                .-+..-..|..+..+..++++.+.+.   +..++.+++.+++++.|+++
T Consensus       257 ~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~  315 (401)
T PRK10874        257 FDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKL  315 (401)
T ss_pred             cCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence                      00111123455777777888887654   34556667777777777654

>PRK10534 L-threonine aldolase; Provisional

Probab=97.70  E-value=4.7e-05  Score=57.08  Aligned_cols=102  Identities=11%  Similarity=0.018  Sum_probs=52.1

Q ss_pred             ChhhhhCCEEEEccccccccCC---CcchhhhhcCCCCCCC--EEEEchhhc--cCccccc-cccccccccceeec---c
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPC---GKFWCHEHFDLEESPD--IVTFSKKMQ--LGGYFLK-PEFVPQQAYRVFNT---W   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~---G~~~~~~~~g~~~~pD--i~t~gK~lg--~gG~~~~-~~~~~~~~~~~~~T---~   69 (119)
                      ++|++|++++++||++. |+..   +...    ..+...+|  +++|+|+.+  .||++.. +.+.+........+   +
T Consensus       154 ~~~~~~~~~lvvDEA~~-~~~~~~~~~~~----~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~~  228 (333)
T PRK10534        154 EFTRERNLALHVDGARI-FNAVVAYGCEL----KEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRARRWRKMTGGGM  228 (333)
T ss_pred             HHHHHcCCeEEeeHHHH-HHHHHHcCCCH----HHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHHHHHHHHHHhCCch
Confidence            36899999999999865 4321   2111    11111234  448999886  3545543 33332211111111   1


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+.++.+++.++|+..  .+..++.++.-+++.+.|+++
T Consensus       229 ~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~  266 (333)
T PRK10534        229 RQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA  266 (333)
T ss_pred             hhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC
Confidence            22334555566666532  223333444456788888765

>PRK07550 hypothetical protein; Provisional

Probab=97.69  E-value=8.1e-05  Score=57.08  Aligned_cols=108  Identities=15%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc---hhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF---WCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~---~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|++||+++|+||++..| +.+..   ......+.. ....+.+|+|.+| .|   |+++.. .+... .......+.+
T Consensus       190 ~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~  268 (386)
T PRK07550        190 DLARRHGIALILDETYRDF-DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAIC  268 (386)
T ss_pred             HHHHHcCeEEEEeccchhh-ccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccC
Confidence            4799999999999998765 22211   011111111 0122449999996 33   565542 23221 1111122334


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++++..++...++.+++  ++.+++++++.+++.+.|++.
T Consensus       269 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (386)
T PRK07550        269 APRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL  309 (386)
T ss_pred             CCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            566666666666654322  233455666666677777653

>PLN00175 aminotransferase family protein; Provisional

Probab=97.67  E-value=9.9e-05  Score=57.44  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=57.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~   71 (119)
                      ++|++|++++|.||++..+-..+.. ......+.. ...|+  +|||.++ .|   |+++.+ .+.... ......+++.
T Consensus       214 ~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~-~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~  292 (413)
T PLN00175        214 SLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMY-ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT  292 (413)
T ss_pred             HHHHHcCcEEEEecccCccccCCcccChhhCCCCc-CcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhccCCC
Confidence            4789999999999998654211221 111111221 11222  8999996 45   676643 233211 1111234455


Q ss_pred             CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++.-.++.+.|+--+.  ++.+++++++-+.+.+.|++.
T Consensus       293 s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (413)
T PLN00175        293 ATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV  332 (413)
T ss_pred             CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66666666666642211  234455666666777777654

>PRK09082 methionine aminotransferase; Validated

Probab=97.64  E-value=9.3e-05  Score=56.84  Aligned_cols=108  Identities=19%  Similarity=0.146  Sum_probs=53.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|++|++++|+||++..+--.+..  ......+.. .-.++  +|||.+| .|   |+++.+ .+... ........+.
T Consensus       190 ~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~  268 (386)
T PRK09082        190 QLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELR-ERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNTFT  268 (386)
T ss_pred             HHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCcc-CcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhcCC
Confidence            4799999999999997543111211  111112221 11222  8999996 45   666643 23221 1111123334


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++++..++.+.++...+  .++++.++++-+++.+.|++.
T Consensus       269 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  309 (386)
T PRK09082        269 VNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS  309 (386)
T ss_pred             CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            556655554444431111  123344566667777777653

>PLN02721 threonine aldolase

Probab=97.64  E-value=9.2e-05  Score=55.59  Aligned_cols=104  Identities=17%  Similarity=0.111  Sum_probs=49.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC--EEEEchhhc--cCcccc-ccccccccccceeeccCC----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD--IVTFSKKMQ--LGGYFL-KPEFVPQQAYRVFNTWMG----   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD--i~t~gK~lg--~gG~~~-~~~~~~~~~~~~~~T~~~----   71 (119)
                      ++|++||+++|+||++. ++.....+. ........+|  +++++|+++  .|+++. .+++.+.... ...++++    
T Consensus       165 ~l~~~~g~~livD~a~~-~~~~~~~~~-~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~  241 (353)
T PLN02721        165 ELAKRHGLKLHIDGARI-FNASVALGV-PVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKR-LRKTLGGGMRQ  241 (353)
T ss_pred             HHHHHcCCEEEEEchhh-hcchhhhCC-CHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHH-HHHhcCCCeeh
Confidence            47999999999999974 332110000 0000001145  448999996  344333 3333321100 1111111    


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+..++++..+++...  +..++.+++.+++.+.|+++
T Consensus       242 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  277 (353)
T PLN02721        242 VGVLAAAALVALQENV--PKLEDDHKKAKLLAEGLNQI  277 (353)
T ss_pred             hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence            1223333444443321  12334456667788888765

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=97.63  E-value=0.00015  Score=54.69  Aligned_cols=102  Identities=17%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc---cCccccc-ccccccc------ccce---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ---LGGYFLK-PEFVPQQ------AYRV---   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg---~gG~~~~-~~~~~~~------~~~~---   65 (119)
                      ++|++||+++++|++|. +|..  ......++    +|+++  ..|.++   +.|++.. +.+.+..      ...+   
T Consensus       148 ~~a~~~~~~li~D~~~~-~g~~--~~~~~~~~----~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~  220 (356)
T cd06451         148 ALAKKHDALLIVDAVSS-LGGE--PFRMDEWG----VDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDL  220 (356)
T ss_pred             HHHHhcCCEEEEeeehh-ccCc--cccccccC----ccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecH
Confidence            47899999999999975 5432  11111122    67764  469886   1255443 2222110      0000   


Q ss_pred             -----------eeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 -----------FNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 -----------~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                 +.+.+.++....+..++++.+.+.   ...++.+++.+++++.|+++
T Consensus       221 ~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  278 (356)
T cd06451         221 LLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL  278 (356)
T ss_pred             HHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                       112234566677778888887653   45667788888898988864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02509 cystathionine beta-lyase

Probab=97.61  E-value=0.00013  Score=58.07  Aligned_cols=97  Identities=15%  Similarity=0.094  Sum_probs=59.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cc-cccccc--cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PE-FVPQQA--YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~-~~~~~~--~~~~~T~   69 (119)
                      ++|++||+++|+||+|. .+-.+..     .+..  +|++  ++.|.+++     ||++.. +. +.....  .....+ 
T Consensus       241 ~lAk~~g~~lIVD~A~a-~~~~~~p-----l~~g--aDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~-  311 (464)
T PLN02509        241 EMAHAQGALVLVDNSIM-SPVLSRP-----LELG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGS-  311 (464)
T ss_pred             HHHHHcCCEEEEECCcc-ccccCCh-----hhcC--CcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCC-
Confidence            47999999999999973 2222322     2222  7877  78899853     454442 22 111100  011122 


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|..++.++..|+.+.  ...++.+++.+++.+.|++
T Consensus       312 ~l~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L~~  348 (464)
T PLN02509        312 GLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSS  348 (464)
T ss_pred             CcCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhc
Confidence            468999998888888874  3556677777777777764

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=97.60  E-value=9.5e-05  Score=56.61  Aligned_cols=109  Identities=14%  Similarity=-0.013  Sum_probs=52.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch--hhhhcCCC-CCCCEEEEchhhc-cC---cccccc-cccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW--CHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~--~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~   71 (119)
                      ++|++|++++|+||++..+--.+...  ..+..+.. ....+.+|||.+| .|   |++..+ .+.+.. ......+.+.
T Consensus       193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~  272 (385)
T PRK09276        193 DFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGV  272 (385)
T ss_pred             HHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhccCCC
Confidence            46899999999999987542112110  11111111 0133459999996 44   676643 232211 1000111133


Q ss_pred             CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++...++.+.|+..++  ++..++++++-+++.+.|++.
T Consensus       273 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (385)
T PRK09276        273 FQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL  312 (385)
T ss_pred             CHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44554555555532111  223444555566666666654

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=97.58  E-value=9.3e-05  Score=56.61  Aligned_cols=109  Identities=11%  Similarity=-0.001  Sum_probs=52.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hh-hhcCCC-CCCCEEEEchhhc-cC---ccccccc-ccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CH-EHFDLE-ESPDIVTFSKKMQ-LG---GYFLKPE-FVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~-~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~~-~~~~~-~~~~~~T~~~   71 (119)
                      ++|++||+++|+||++..+-..+... .. ...+.. ....+-+|||.+| .|   |++..+. +.+.. ......+.+.
T Consensus       191 ~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~  270 (383)
T TIGR03540       191 EFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGV  270 (383)
T ss_pred             HHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhcccCC
Confidence            47999999999999986442122110 00 111111 0133449999996 44   6665432 32211 1111112233


Q ss_pred             CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++...++.+.|+-..+  ++.+++++++-+.+.+.|++.
T Consensus       271 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  310 (383)
T TIGR03540       271 FQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI  310 (383)
T ss_pred             ChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44444445454432111  123344555566666666653

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=97.58  E-value=0.00053  Score=52.08  Aligned_cols=102  Identities=16%  Similarity=0.128  Sum_probs=58.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cC-ccccc-cccc----cccccce-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LG-GYFLK-PEFV----PQQAYRV-----   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~g-G~~~~-~~~~----~~~~~~~-----   65 (119)
                      ++|++||+++|+|.+| .+|...  .-..  ...  +|++  ++.|++.  .| |++.. +.+.    .......     
T Consensus       155 ~l~~~~~~~livDa~~-~~g~~~--~~~~--~~~--~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~  227 (368)
T PRK13479        155 AVAKRHGKRLIVDAMS-SFGAIP--IDIA--ELG--IDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYD  227 (368)
T ss_pred             HHHHHcCCEEEEEccc-ccCCcc--cccc--ccC--ceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHH
Confidence            4799999999999886 465321  1111  222  7776  7889873  23 55443 2221    1111100     


Q ss_pred             ---------eeccCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 ---------FNTWMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ---------~~T~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                               ...|..+.....+..++++.+.++    +..+++.++.+++++.|+++
T Consensus       228 ~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  284 (368)
T PRK13479        228 QWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL  284 (368)
T ss_pred             HHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence                     111345666777777888877543    34456777777788877764

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=97.57  E-value=9.6e-05  Score=57.32  Aligned_cols=97  Identities=13%  Similarity=0.075  Sum_probs=59.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc----cceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA----YRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~----~~~~~T   68 (119)
                      ++|++||+++|+||++. .+..+..     .+..  .|++  +++|.+++     ||+++.+ .+....+    ...+ +
T Consensus       168 ~la~~~gi~livD~a~a-~~~~~~~-----~~~g--~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~-g  238 (391)
T TIGR01328       168 RDAHSQGVKVIVDNTFA-TPMLTNP-----VALG--VDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT-G  238 (391)
T ss_pred             HHHHHcCCEEEEECCCc-hhccCCc-----hhcC--CCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCC-C
Confidence            47899999999999974 2222222     1222  6776  78899962     4666543 2322111    1111 2


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ...+|..++.++..|+.+.  ...++.+++.+++.+.|++
T Consensus       239 ~~l~~~~a~l~l~~L~tl~--~r~~~~~~na~~la~~L~~  276 (391)
T TIGR01328       239 SVISPFDAWLILRGLKTLN--IRMKRHSENAMKVAEYLKS  276 (391)
T ss_pred             CCCCcHHHHHHHhCcCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            3568888887777666553  3456677788888887765

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK05942 aspartate aminotransferase; Provisional

Probab=97.56  E-value=0.00011  Score=56.54  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=54.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhh-hhcCCCC-CCCEEEEchhhc-cC---cccccc-ccccccc-cceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCH-EHFDLEE-SPDIVTFSKKMQ-LG---GYFLKP-EFVPQQA-YRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~-~~~g~~~-~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~-~~~~~T~~~   71 (119)
                      ++|++|++++|+||++.-+-..+.. ... ...+... ...+-+|||.+| .|   |++..+ .+.+... ......++.
T Consensus       197 ~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~  276 (394)
T PRK05942        197 AFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGI  276 (394)
T ss_pred             HHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcccCC
Confidence            4789999999999997643211211 011 1111110 133458999886 34   666543 2322111 111112334


Q ss_pred             CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++..++.++|+..++  ++.+++++++-+++.+.|++.
T Consensus       277 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  316 (394)
T PRK05942        277 FSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL  316 (394)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            55555556666653321  234455666666677777653

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=97.56  E-value=0.00021  Score=54.22  Aligned_cols=96  Identities=14%  Similarity=0.054  Sum_probs=48.3

Q ss_pred             hCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800           6 HGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL   77 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a   77 (119)
                      +|+++|+||++..|-..+. .......+-. ...++  +|||.+| .|   |++..+ .+.+.... ...++..|+++..
T Consensus       182 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~-~~~~~~~~~~~q~  259 (359)
T PRK03158        182 SHVLVVLDEAYYEYVTAEDYPDTLPLLEKY-ENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNI-ARPPFNTTRIAQY  259 (359)
T ss_pred             CCcEEEEECchHhhcCCcccccHHHHHHhc-CCEEEEEechHhhcCcchhhehhcCCHHHHHHHHH-hcCCCCCCHHHHH
Confidence            6999999999865411111 1111111111 12233  9999997 45   666543 23221111 1124567888888


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q psy4800          78 LLKGIIDTIHNENLLDRVQKTGDILLNVR  106 (119)
Q Consensus        78 ~a~a~l~~i~~~~~~~~~~~~g~~l~~~L  106 (119)
                      ++.++|+   ++++.+++++..+..++.+
T Consensus       260 ~~~~~l~---~~~~~~~~~~~~~~~~~~~  285 (359)
T PRK03158        260 AAIAALE---DQAFLKECVEKNAEGLEQY  285 (359)
T ss_pred             HHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence            8877774   3344444433333333333

>PRK06290 aspartate aminotransferase; Provisional

Probab=97.55  E-value=0.00016  Score=56.25  Aligned_cols=108  Identities=13%  Similarity=0.009  Sum_probs=52.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE--EEchhhc-cC---ccccccc-ccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKPE-FVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~~-~~~~~-~~~~~~T~~~   71 (119)
                      ++|++|++++|.||++..+--.+.. ...+..+.. ..+|+  +|||.+| .|   ||++.+. +.... ......+.+.
T Consensus       206 ~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~-~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~  284 (410)
T PRK06290        206 DFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAK-EVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQ  284 (410)
T ss_pred             HHHHHcCeEEEEecchhhceeCCCCcChhcCCCcc-ccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhccccCC
Confidence            4789999999999998654111211 111111111 12233  8999996 45   6766432 22211 1111112122


Q ss_pred             CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.++..++.+.|+--+ .++.+++++++-+++.+.|++.
T Consensus       285 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  323 (410)
T PRK06290        285 FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV  323 (410)
T ss_pred             cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3344445545543211 1234455566666677777654

>PRK07681 aspartate aminotransferase; Provisional

Probab=97.55  E-value=0.00014  Score=56.03  Aligned_cols=109  Identities=15%  Similarity=0.022  Sum_probs=52.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccccc-cceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQA-YRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~-~~~~~T~~~   71 (119)
                      ++|++||+++|.||++..+--.+..  ...+..+.. ....+-+|||.+| .|   |+++.+ .+..... .....+++.
T Consensus       193 ~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~  272 (399)
T PRK07681        193 AFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGV  272 (399)
T ss_pred             HHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhcccCC
Confidence            4789999999999998755111211  111111110 0022338999996 44   666543 2332111 111123344


Q ss_pred             CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+...++.+.|+--.+  ++.++.++++-+++.+.|++.
T Consensus       273 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (399)
T PRK07681        273 FLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF  312 (399)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            55555555555532110  122334455555666666553

>PRK08361 aspartate aminotransferase; Provisional

Probab=97.55  E-value=0.00016  Score=55.60  Aligned_cols=106  Identities=12%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~~   71 (119)
                      ++|++|++++|+||+...|--.+. .........+  .+++  +|+|.+| .|   |++..+ .+.... ......+++.
T Consensus       193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~  270 (391)
T PRK08361        193 DIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPD--NTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGNV  270 (391)
T ss_pred             HHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCC--CEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccCC
Confidence            368999999999999865411111 1111111111  3344  8999996 44   666543 232211 1111223344


Q ss_pred             CHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHN----ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~----~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +++...++...|+--..    ++..++++++-+.+.+.|++
T Consensus       271 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  311 (391)
T PRK08361        271 ASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE  311 (391)
T ss_pred             ChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555555532111    12233344445555555554

>PRK06767 methionine gamma-lyase; Provisional

Probab=97.55  E-value=5.9e-05  Score=58.28  Aligned_cols=97  Identities=13%  Similarity=0.094  Sum_probs=56.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc----ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ----AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~----~~~~~~T   68 (119)
                      ++|+++|+++|+||++. .+-.+...   .+|    .|++  +++|.+++     ||+++.+ .+....    ....++ 
T Consensus       170 ~la~~~g~~vivD~a~a-~~~~~~pl---~~g----~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~-  240 (386)
T PRK06767        170 RVAKRNGLLVIVDNTFC-SPYLQRPL---ELG----CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG-  240 (386)
T ss_pred             HHHHHcCCEEEEECCCc-ccccCCch---hcC----CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC-
Confidence            47999999999999974 21122211   122    5777  56798852     4666543 322211    111122 


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                       ..+|..+++++..|+.+.  ...++.+++.+++.+.|++.
T Consensus       241 -~~~~~~a~l~~~~L~tl~--~r~~~~~~~a~~la~~L~~~  278 (386)
T PRK06767        241 -IMAPFDAWLLLRGLKTLA--VRMDRHCDNAEKIVSFLKNH  278 (386)
T ss_pred             -CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHcC
Confidence             346777666665555443  34566778888888887753

>PRK14012 cysteine desulfurase; Provisional

Probab=97.55  E-value=0.00063  Score=52.57  Aligned_cols=102  Identities=15%  Similarity=0.116  Sum_probs=55.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc-c--Cccccccccc-cccccce-------ee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ-L--GGYFLKPEFV-PQQAYRV-------FN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg-~--gG~~~~~~~~-~~~~~~~-------~~   67 (119)
                      ++|++||+++|+|++|+ +|..-.-  ..  ...  +|+++++  |.+| .  |++++.+... ...+...       +.
T Consensus       168 ~la~~~g~~vivD~a~~-~g~~~~~--~~--~~~--~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~  240 (404)
T PRK14012        168 EICRERGIIFHVDAAQS-VGKVPID--LS--KLK--VDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMR  240 (404)
T ss_pred             HHHHHcCCEEEEEcchh-cCCcccC--cc--cCC--CCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCccCCcc
Confidence            47999999999999985 4332111  11  223  8999887  9775 2  3334443221 1111111       11


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ....+........++++.++.  ++..++.+++.+++.+.|+++
T Consensus       241 ~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~  284 (404)
T PRK14012        241 SGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI  284 (404)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            111233344444466666543  235566777777888877653

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=97.54  E-value=9.6e-05  Score=57.51  Aligned_cols=98  Identities=20%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~-~~~~~~T~~~   71 (119)
                      ++|++||+++|+||++..+ .....     ....  +|++  +++|.+++     ||+++.+ .+.+.. ..........
T Consensus       173 ~la~~~gi~livD~t~a~~-~~~~~-----l~~~--~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~  244 (398)
T PRK08249        173 AAAKKVGALVVVDNTFATP-INQNP-----LALG--ADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM  244 (398)
T ss_pred             HHHHHcCCEEEEECCcCcc-ccCCc-----hhhC--CCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            4799999999999997521 11111     1122  6766  78899952     4665543 232211 1111223367


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +|..+..++..++.+.  ...++.+++.+.+.+.|++
T Consensus       245 s~~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~  279 (398)
T PRK08249        245 DPMSAYLILRGMKTLK--LRVRQQQESAMALAKYLQT  279 (398)
T ss_pred             CHHHHHHHHhCcchHH--HHHHHHHHHHHHHHHHHHc
Confidence            8888888888887774  3445666777777777764

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=97.53  E-value=0.00035  Score=52.68  Aligned_cols=105  Identities=15%  Similarity=0.078  Sum_probs=50.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~   72 (119)
                      ++|++|++++|+||+..-|...+..-......-  .+.++   +|||.+| .|   ||++.+ .+.+.... ....+..+
T Consensus       149 ~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~-~~~~~~~~  225 (332)
T PRK06425        149 EICRKKGALLFIDEAFIDFVPNRAEEDVLLNRS--YGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRK-ITEPWSVC  225 (332)
T ss_pred             HHHHHcCCEEEEecchhccccccchhHHHHhcc--CCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHH-cCCCCccC
Confidence            368899999999999765522121111111111  13333   8999997 45   676643 23321111 11122233


Q ss_pred             HHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+.++ +...+.-. .++..+.+++.-+++.+.|+++
T Consensus       226 ~~~~~~-l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (332)
T PRK06425        226 DPAIDF-IRSIDLDYVAKHSLDIMENERSYLINNLEAM  262 (332)
T ss_pred             HHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            333222 21211100 0134455566666677777654

>PRK08960 hypothetical protein; Provisional

Probab=97.53  E-value=0.00027  Score=54.24  Aligned_cols=104  Identities=18%  Similarity=0.212  Sum_probs=51.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||++..+ ..+... .......  ++++   +|+|.+| .|   |++..+ .+... .......+.+.
T Consensus       192 ~~~~~~~~~li~De~Y~~~-~~~~~~-~~~~~~~--~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~  267 (387)
T PRK08960        192 QALRARGGHLVVDEIYHGL-TYGVDA-ASVLEVD--DDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLYISA  267 (387)
T ss_pred             HHHHHcCCEEEEEcccccc-ccCCCC-CChhhcc--CCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhccCC
Confidence            3689999999999998765 222110 1112333  5655   6999986 22   554432 23221 11111223344


Q ss_pred             CHHHHHHHHHHHHH-Hhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDT-IHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~-i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +++.-.++.+.++- ..+  .+.++.++++-+.+.+.|++
T Consensus       268 s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~  307 (387)
T PRK08960        268 STPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE  307 (387)
T ss_pred             CHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66665656565531 100  12233344444455555544

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=97.53  E-value=0.00018  Score=55.65  Aligned_cols=97  Identities=15%  Similarity=0.037  Sum_probs=55.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-c-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-Q-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~-~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|. .|-.....   .+|    +|++  ++.|.+++     ||++..+ ..... . ....+++ .
T Consensus       159 ~la~~~g~~livD~t~a-~g~~~~pl---~~g----aDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~-~  229 (377)
T TIGR01324       159 KAARNPGIVIMIDNTWA-AGLLFKPL---EHG----VDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQ-M  229 (377)
T ss_pred             HHHHHcCCEEEEECCCc-cccccCcc---ccC----ceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCC-C
Confidence            47999999999999985 33232221   123    7887  45999951     4555433 22111 1 1122233 5


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+...+..++.+.  -..++.+++...+.+.|++
T Consensus       230 l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L~~  265 (377)
T TIGR01324       230 VDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWLSE  265 (377)
T ss_pred             CCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHh
Confidence            67877666666666442  2345666666666666654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08912 hypothetical protein; Provisional

Probab=97.53  E-value=0.00015  Score=55.67  Aligned_cols=108  Identities=13%  Similarity=0.080  Sum_probs=54.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~   70 (119)
                      ++|++|++++|+||++..+--.+..  -.....+.. ..+++  +|||.+| .|   |++..+ .+.... ......++.
T Consensus       186 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~  264 (387)
T PRK08912        186 EFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMR-ERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFT  264 (387)
T ss_pred             HHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCcc-CceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccc
Confidence            4689999999999998643111211  011111221 12333  8999997 45   666543 222211 111122344


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|....++.+.+....+  +++.++++++-+++.+.|++.
T Consensus       265 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (387)
T PRK08912        265 TPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI  305 (387)
T ss_pred             CChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            455555555555531111  234555666667777777654

>PRK08175 aminotransferase; Validated

Probab=97.52  E-value=0.00015  Score=55.86  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=52.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC--E--EEEchhhc-cC---cccccc-cccccc-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD--I--VTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD--i--~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~   70 (119)
                      ++|++||+++|+||+...+--.+... .....+...+|  +  -+|||.+| .|   |+++.+ .+.+.. .......++
T Consensus       191 ~~a~~~~i~ii~De~y~~l~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~  269 (395)
T PRK08175        191 ALAKRYDVLVVHDLAYADIVYDGWKA-PSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYG  269 (395)
T ss_pred             HHHHHcCcEEEEecchHhhccCCCCC-cchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhhcccC
Confidence            47999999999999986541112110 01111111133  2  38999996 33   566543 233211 111112233


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++....++.+.|+-.+.  +.++++++++-+++.+.|++.
T Consensus       270 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  310 (395)
T PRK08175        270 TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA  310 (395)
T ss_pred             CCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344455555555532111  123444555656666666654

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=97.52  E-value=0.00019  Score=54.44  Aligned_cols=106  Identities=15%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEE--EEchhhc-cC---ccccccc-cccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKPE-FVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~~-~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||++.-+ ..+. .......+.+  ..++  +|+|.+| .|   |++..+. +.+. .......+.+.
T Consensus       163 ~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~--~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~  239 (350)
T TIGR03537       163 AMCREHGIILCSDECYTEI-YFGEPPHSALEVGIE--NVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVAS  239 (350)
T ss_pred             HHHHHcCcEEEEecccccc-ccCCCCCchhhcCcC--CEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhccCC
Confidence            4689999999999997532 1222 1111111111  1232  7899986 34   6665432 3221 11111122244


Q ss_pred             CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++..++.+.+..-+ ..+.+++++++.+.+.+.|++.
T Consensus       240 ~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~  278 (350)
T TIGR03537       240 PDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV  278 (350)
T ss_pred             CHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5555555555543100 0123445666666666666553

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK08068 transaminase; Reviewed

Probab=97.51  E-value=0.0002  Score=55.01  Aligned_cols=108  Identities=11%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-c-hhhhhcCCCC-CCCEEEEchhhc-cC---ccccccc-cccc-cc-cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-F-WCHEHFDLEE-SPDIVTFSKKMQ-LG---GYFLKPE-FVPQ-QA-YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~-~~~~~~g~~~-~pDi~t~gK~lg-~g---G~~~~~~-~~~~-~~-~~~~~T~~   70 (119)
                      ++|++|++++|+||++.-+...+. . ......+... ...+-+|||.+| .|   |+++.+. +.+. .. ....+. +
T Consensus       194 ~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~-~  272 (389)
T PRK08068        194 AFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFV-S  272 (389)
T ss_pred             HHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhccC-C
Confidence            478999999999999865432231 1 1111122110 022338999997 45   6665432 3221 00 011111 2


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++....++.+.+..-.+  +.++++++++-+++.+.|+++
T Consensus       273 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~  313 (389)
T PRK08068        273 LFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI  313 (389)
T ss_pred             CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            233333333344321011  234455666666677777654

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=97.50  E-value=0.00019  Score=55.29  Aligned_cols=109  Identities=16%  Similarity=0.072  Sum_probs=54.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++|++++|+||++..+--.|.. .....+..+...-+-+|+|.+| .|   |++..+ .+... .....+++.+.++
T Consensus       193 ~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~  272 (391)
T PRK07309        193 DVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATT  272 (391)
T ss_pred             HHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCCh
Confidence            4789999999999998754211221 1111111110011228999986 44   565543 33321 1111122224566


Q ss_pred             HHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++..++.+.|+.-.  ......+++++-+++.+.|++.
T Consensus       273 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (391)
T PRK07309        273 MAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL  310 (391)
T ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66666655554311  1123344555656666666653

>PRK06348 aspartate aminotransferase; Provisional

Probab=97.47  E-value=0.00018  Score=55.25  Aligned_cols=106  Identities=13%  Similarity=0.029  Sum_probs=55.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhh-hhcCCCCCCCE---EEEchhhc-cC---cccccc-cccccc-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCH-EHFDLEESPDI---VTFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~-~~~g~~~~pDi---~t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T~~   70 (119)
                      ++|++|++++|.||+...+--.+..-.. ...+..  +.+   .+|||.++ .|   |++..+ .+.... ......++.
T Consensus       189 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~  266 (384)
T PRK06348        189 KIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP--ERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGICFS  266 (384)
T ss_pred             HHHHHCCeEEEEecccccceeCCCccchhhcCCCc--CcEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhccCC
Confidence            4689999999999998765211111011 111111  222   28999986 33   565543 232211 111223456


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .++++-.++..+|+..++  +++++..+++-+++.+.|++
T Consensus       267 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~  306 (384)
T PRK06348        267 APTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES  306 (384)
T ss_pred             CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677777777666653221  12334445555566666654

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=97.47  E-value=0.00028  Score=54.12  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccc--ccccc-------c----c
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLK--PEFVP-------Q----Q   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~--~~~~~-------~----~   61 (119)
                      ++|++||+++|.|++|+ +|-. .  .....|....-|+.++|    |.++  .||+++.  +.+.+       .    .
T Consensus       142 ~l~~~~~~~lI~D~a~a-~g~~-~--~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~  217 (380)
T TIGR03588       142 ALAKKHGLKIIEDASHA-LGAE-Y--GGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKD  217 (380)
T ss_pred             HHHHHcCCEEEEECCCc-ccCc-c--CCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCC
Confidence            47999999999999986 3321 0  00112320015888877    8885  4666553  11110       0    0


Q ss_pred             c----------cc-----eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 A----------YR-----VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~----------~~-----~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .          ..     .+..+..+.+..+.+++.|+.+  ++..++-+++.+++.+.|..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~  278 (380)
T TIGR03588       218 PLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDL  278 (380)
T ss_pred             cccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence            0          00     1122345777777777777766  345667788888999988775

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=97.46  E-value=0.00055  Score=53.21  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccc-ccccccccccc-----------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFL-KPEFVPQQAYR-----------   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~-~~~~~~~~~~~-----------   64 (119)
                      ++|++||+++|+|++|. +|..-  .-.+  ...  +|++  ++.|.+|  +-|+.. ...+.+..++.           
T Consensus       197 ~l~~~~g~~vivD~a~~-~g~~~--~~~~--~~~--~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~  269 (424)
T PLN02855        197 HWAHAVGAKVLVDACQS-VPHMP--VDVQ--TLG--ADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVF  269 (424)
T ss_pred             HHHHHcCCEEEEEhhhh-cCCcC--CCch--hcC--CCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeee
Confidence            47999999999999984 43321  1111  222  7877  6789654  123433 22221110000           


Q ss_pred             -----------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 -----------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                 -+..-..+....++..++++.+.+.   +..++.+++.+++++.|+++
T Consensus       270 ~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~  328 (424)
T PLN02855        270 LDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSV  328 (424)
T ss_pred             cCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence                       0111124556777777888887653   45567778888888887664

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=97.46  E-value=9.7e-05  Score=49.19  Aligned_cols=43  Identities=30%  Similarity=0.305  Sum_probs=30.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg   47 (119)
                      ++|+++|+++|+||++.++......  ......  .+|+++.|  |.++
T Consensus       116 ~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~--~~d~~~~s~~K~~~  160 (170)
T cd01494         116 KIAKEYGILLLVDAASAGGASPAPG--VLIPEG--GADVVTFSLHKNLG  160 (170)
T ss_pred             HHHHHcCCEEEEecccccccccccc--cccccc--cCCEEEEEcccccC
Confidence            4799999999999998866443322  111222  38999888  9995

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=97.45  E-value=0.0008  Score=51.69  Aligned_cols=102  Identities=19%  Similarity=0.114  Sum_probs=58.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC-cccc-ccccccccccc-----------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG-GYFL-KPEFVPQQAYR-----------   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g-G~~~-~~~~~~~~~~~-----------   64 (119)
                      ++|++||+++|+|++|. +|..  ..-..  ...  +|++  ++.|.+| .| |+.. .+.+.+..++.           
T Consensus       183 ~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~  255 (403)
T TIGR01979       183 KLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALD--CDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVS  255 (403)
T ss_pred             HHHHHcCCEEEEEchhh-cCcc--ccCcc--ccC--CCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecc
Confidence            37999999999999974 3321  11111  122  7887  5569876 22 4543 22222111000           


Q ss_pred             -----------eeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 -----------VFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 -----------~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                 .+..-..+..+.++..++++.+.+.   ...++..++.+++++.|+++
T Consensus       256 ~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~  314 (403)
T TIGR01979       256 FEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEI  314 (403)
T ss_pred             cCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence                       0111124555667778888887653   45677888888888887764

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=97.45  E-value=0.0011  Score=50.60  Aligned_cols=101  Identities=17%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc---Cccccccccccccccc-------eeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL---GGYFLKPEFVPQQAYR-------VFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~---gG~~~~~~~~~~~~~~-------~~~T   68 (119)
                      ++|++||+++++|++|. +|..  ..-..  ..  .+|+++++  |.+|.   |+++++..+. ..+..       -...
T Consensus       164 ~la~~~g~~~ivD~a~~-~g~~--~~~~~--~~--~~D~~~~s~~K~~gp~G~g~l~vr~~~~-~~p~~~g~~~~~~~~~  235 (382)
T TIGR03403       164 EICKERGVLFHTDAVQA-IGKI--PVDVQ--KA--GVDFLSFSAHKFHGPKGVGGLYIRKGVE-LTPLFHGGEHMGGRRS  235 (382)
T ss_pred             HHHHHcCCEEEEechhh-cCCC--ccCcc--cc--CCCEEEEcchhhCCCCceEEEEECCCCC-CCCcccCCCCCCCccc
Confidence            47899999999999975 3321  11111  12  28999888  97652   2233332221 00100       0112


Q ss_pred             cCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...|..+..+..++++.+.+  +...++++++.+++++.|+++
T Consensus       236 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~  278 (382)
T TIGR03403       236 GTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL  278 (382)
T ss_pred             CCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            34566777677778877654  234456777777777777653

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK03321 putative aminotransferase; Provisional

Probab=97.45  E-value=0.00023  Score=53.84  Aligned_cols=80  Identities=18%  Similarity=0.115  Sum_probs=45.9

Q ss_pred             hhhh--hCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccC
Q psy4800           2 YEKY--HGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWM   70 (119)
Q Consensus         2 l~~~--~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~   70 (119)
                      +|++  +++++|+||++..|-..+.. -..+.....  ++++   +|||.+| .|   |++..+ .+.+.... ...++.
T Consensus       170 l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~-~~~~~~  246 (352)
T PRK03321        170 FLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDH--PNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRK-VAVPFS  246 (352)
T ss_pred             HHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhC--CCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHH-hcCCCC
Confidence            4554  69999999998765332221 112222222  5655   7999996 44   666643 33322111 124556


Q ss_pred             CCHHHHHHHHHHHH
Q psy4800          71 GDPGKVLLLKGIID   84 (119)
Q Consensus        71 ~~p~~~a~a~a~l~   84 (119)
                      .++++..++.++|+
T Consensus       247 ~s~~~q~~a~~~l~  260 (352)
T PRK03321        247 VNSLAQAAAIASLA  260 (352)
T ss_pred             CCHHHHHHHHHHhc
Confidence            78888887777775

>PLN02651 cysteine desulfurase

Probab=97.43  E-value=0.00073  Score=51.47  Aligned_cols=101  Identities=14%  Similarity=0.059  Sum_probs=58.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc---cCccccccccccc-cccce-------ee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ---LGGYFLKPEFVPQ-QAYRV-------FN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg---~gG~~~~~~~~~~-~~~~~-------~~   67 (119)
                      ++|++||+++++|.+|+ +|..  ..-.+  .+.  +|++++  -|.+|   .|.++++++.... .+...       +.
T Consensus       162 ~~~~~~g~~~~vD~a~~-~g~~--~~~~~--~~~--~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~  234 (364)
T PLN02651        162 ELCREKKVLFHTDAAQA-VGKI--PVDVD--DLG--VDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRR  234 (364)
T ss_pred             HHHHHcCCEEEEEcchh-hCCc--ccCcc--cCC--CCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCcc
Confidence            47999999999999986 3321  11122  223  788855  46433   2233344432211 11111       11


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~  108 (119)
                      ....|..++.+..++|+++.+.  +..++.+++.+++++.|++
T Consensus       235 ~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~  277 (364)
T PLN02651        235 SGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA  277 (364)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            2235666778888899988653  4556777888888887764

>PRK07568 aspartate aminotransferase; Provisional

Probab=97.42  E-value=0.00042  Score=53.13  Aligned_cols=106  Identities=18%  Similarity=0.132  Sum_probs=53.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-h-hhhcCCCCCCCEE---EEchhhccC----ccccc--cccccccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-C-HEHFDLEESPDIV---TFSKKMQLG----GYFLK--PEFVPQQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~-~~~~g~~~~pDi~---t~gK~lg~g----G~~~~--~~~~~~~~~~~~~T~   69 (119)
                      ++|++|++++|+||+...|...+... . ....+..  +.++   +|||.++..    |+++.  +.+..........++
T Consensus       189 ~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~--~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~  266 (397)
T PRK07568        189 EIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLE--DRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARL  266 (397)
T ss_pred             HHHHHCCcEEEEeccchhcccCCCCccChhhcCCCc--CCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccC
Confidence            47899999999999988764334211 1 1111211  3444   899998522    34332  223221100111234


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+++...++.+.|+.-++  +++.+.++++-+.+.+.|++
T Consensus       267 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  307 (397)
T PRK07568        267 SPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK  307 (397)
T ss_pred             CCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556665555555542111  12334455555666666654

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.42  E-value=0.0003  Score=53.49  Aligned_cols=102  Identities=12%  Similarity=0.027  Sum_probs=52.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc---Cccccc-ccccc----cccc-------ce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL---GGYFLK-PEFVP----QQAY-------RV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~---gG~~~~-~~~~~----~~~~-------~~   65 (119)
                      ++|++||+++|+||++. +|...  +....++.+  ..+.+++|+++.   .|++.. +.+.+    ....       ..
T Consensus       163 ~~~~~~~~~vivD~a~~-~g~~~--~~~~~~~~d--~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~  237 (361)
T cd06452         163 KVCHEYGVPLLLNGAYT-VGRMP--VSGKELGAD--FIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELL  237 (361)
T ss_pred             HHHHHcCCeEEEECCcc-cCCcC--CCHHHcCCC--EEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeee
Confidence            47999999999999975 43222  222233432  334478899852   255543 22221    1111       11


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHNE-NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++|  .++.....+.++++.+.+. +...+..++.+++++.|+++
T Consensus       238 ~~~--~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l  280 (361)
T cd06452         238 GCT--LRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI  280 (361)
T ss_pred             ccc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            112  2223444555666654321 22233334457888888765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN02242 methionine gamma-lyase

Probab=97.40  E-value=0.0002  Score=56.12  Aligned_cols=98  Identities=13%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc-cc----eee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA-YR----VFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~-~~----~~~   67 (119)
                      ++|++||+++|+||+++.+ ....    ..+|    .|++  +++|.+++     ||+++.+ .+..... ..    ...
T Consensus       187 ~la~~~gi~livDea~~~~-~~~~----~~~g----~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~  257 (418)
T PLN02242        187 RIAHEKGVTVVVDNTFAPM-VLSP----ARLG----ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLL  257 (418)
T ss_pred             HHHHHhCCEEEEECCCCcc-CCCH----HHcC----CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhcc
Confidence            4799999999999998533 2211    1223    5665  89999852     4666543 2222111 11    111


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ....+|..++.....++.+  +...++.+++.+++.+.|++.
T Consensus       258 g~~~~~~~A~l~~~~l~tl--~~r~~~~~~~a~~la~~L~~~  297 (418)
T PLN02242        258 GPTMNPKVAFELSERLPHL--SLRMKEHCRRAMEYAKRMKEL  297 (418)
T ss_pred             CCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence            1123344433333333322  234567788888888888875

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=97.40  E-value=0.0006  Score=51.84  Aligned_cols=103  Identities=17%  Similarity=0.111  Sum_probs=51.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---ccccc-c-ccccccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLK-P-EFVPQQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~-~-~~~~~~~~~~~~T~~~~   72 (119)
                      ++|++|++++|+||+...|-..+...........  .+++  +|+|.++ .|   |+++. + .+...... ....+..+
T Consensus       169 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~-~~~~~~~~  245 (356)
T PRK08056        169 ERCKSLNIALILDEAFIDFIPDETGFIPQLADNP--HLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRR-QQMPWSIN  245 (356)
T ss_pred             HHHHhcCCEEEEecchhccCCcchHHHHHhccCC--CEEEEEechhhccCcchhheeeecCCHHHHHHHHH-hCCCCchh
Confidence            3689999999999998766222221111111111  2333  8999996 32   45443 2 23221111 11233445


Q ss_pred             HHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHNEN----LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~----~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++..++.+.+   +.+.    ..++++++-+++.+.|+++
T Consensus       246 ~~~~~~a~~~l---~~~~~~~~~~~~~~~~r~~l~~~L~~~  283 (356)
T PRK08056        246 AFAALAGEVIL---QDRAYQQATWQWLAEEGARFYQALCAL  283 (356)
T ss_pred             HHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55555555554   2222    2344555555666666543

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=97.39  E-value=0.00036  Score=53.12  Aligned_cols=107  Identities=12%  Similarity=0.094  Sum_probs=52.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhc--CCCCCCCEE---EEchhhc-cC---cccccc-cccccc-ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHF--DLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~--g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~T   68 (119)
                      ++|++||+++|.||++..+.-.+.. ......  +.. .+.++   +|+|.++ .|   |++..+ .+.... ......+
T Consensus       175 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~~  253 (364)
T PRK07865        175 AWARERGAVVASDECYLELGWDAEPVSILDPRVCGGD-HTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHAG  253 (364)
T ss_pred             HHHHHcCCEEEEecchhhhccCCCCCccccccccCCc-cceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHHhcC
Confidence            3689999999999998755322221 111110  111 11222   8999985 34   676543 232211 1111122


Q ss_pred             cCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +..+++...++.+.|+.-+. ++.++..+++-+.+.+.|++
T Consensus       254 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  294 (364)
T PRK07865        254 MMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEA  294 (364)
T ss_pred             CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23456655555555532110 12334455555566666655

>PRK07683 aminotransferase A; Validated

Probab=97.37  E-value=0.00058  Score=52.52  Aligned_cols=107  Identities=13%  Similarity=0.092  Sum_probs=53.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCC-E--EEEchhhc-cC---ccccccc-ccccc-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPD-I--VTFSKKMQ-LG---GYFLKPE-FVPQQ-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pD-i--~t~gK~lg-~g---G~~~~~~-~~~~~-~~~~~~T~~   70 (119)
                      ++|+++|+++|+||++..+-..+.. ......+..  .. +  -+|||.+| .|   |++..+. +.... ....++..+
T Consensus       188 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~  265 (387)
T PRK07683        188 DVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMR--EKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTC  265 (387)
T ss_pred             HHHHHcCeEEEEecccccceeCCCcCChhhccCCc--CCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhccCC
Confidence            4789999999999998754111111 111111221  12 2  28999997 45   6665432 32211 111122223


Q ss_pred             CCHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIH--NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~--~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++++..++.+.|+.-.  -+..+++++++-+++.+.|++.
T Consensus       266 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  306 (387)
T PRK07683        266 ASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM  306 (387)
T ss_pred             CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45555555555553211  1123444556666677777653

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=97.36  E-value=0.00042  Score=52.58  Aligned_cols=94  Identities=19%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             CCEEEEccccccccCCCcch-hhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHHHHH
Q psy4800           7 GSALLIDEVQTGGGPCGKFW-CHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVLLLK   80 (119)
Q Consensus         7 ~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a~a~   80 (119)
                      ++++|.||++..|...+... ..+..+-.  .-+-+|||.++ .|   ||++.+ .+...... ..+++..++++..++.
T Consensus       186 ~~~iI~De~y~~~~~~~~~~~~~~~~~~v--i~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~  262 (357)
T PRK14809        186 ETLVVVDEAYGEFAERPSAVALVEERDDV--AVLRTFSKAYGLAGLRLGYAVVPEEWADAYAR-VNTPFAASELACRAGL  262 (357)
T ss_pred             CcEEEEechhhhccCCchhHHHHhhCCCE--EEEecchhHhcCcchhheeeecCHHHHHHHHH-hCCCCCCCHHHHHHHH
Confidence            78999999987663322211 11111111  23348999996 45   666543 33321111 1235567788777777


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHH
Q psy4800          81 GIIDTIHNENLLDRVQKTGDILLNVR  106 (119)
Q Consensus        81 a~l~~i~~~~~~~~~~~~g~~l~~~L  106 (119)
                      +.|+   ++++.++.++.-+..++.+
T Consensus       263 ~~l~---~~~~~~~~~~~~~~~r~~l  285 (357)
T PRK14809        263 AALD---DDEHVERTVETARWAREYI  285 (357)
T ss_pred             HHhC---CHHHHHHHHHHHHHHHHHH
Confidence            6663   3344444433333334444

>PRK09148 aminotransferase; Validated

Probab=97.35  E-value=0.00031  Score=54.46  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCCCCCCC----EEEEchhhc-cC---ccccccc-cccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLEESPD----IVTFSKKMQ-LG---GYFLKPE-FVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pD----i~t~gK~lg-~g---G~~~~~~-~~~~-~~~~~~~T~   69 (119)
                      ++|++|++++|+||++..|---+... .....  ...+|    +-+|||.+| .|   |+++.+. +.+. .......++
T Consensus       192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~--~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~  269 (405)
T PRK09148        192 AFAKKHDIIILSDLAYSEIYFDGNPPPSVLQV--PGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDY  269 (405)
T ss_pred             HHHHHcCeEEEEeccchhhhcCCCCCCChhhC--CCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhcc
Confidence            47899999999999986541111111 01111  11123    238999996 44   6666532 3221 111112233


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +.++++-.++.+.|+--++  ++.++.++++-+++.+.|++
T Consensus       270 ~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~  310 (405)
T PRK09148        270 GAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR  310 (405)
T ss_pred             CCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555531111  12333445555556666654

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=97.35  E-value=0.00033  Score=53.25  Aligned_cols=108  Identities=12%  Similarity=0.059  Sum_probs=52.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchh-hhh--cCCCCCCCEE--EEchhhc-c---Ccccccc-cccccc-ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEH--FDLEESPDIV--TFSKKMQ-L---GGYFLKP-EFVPQQ-AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~--~g~~~~pDi~--t~gK~lg-~---gG~~~~~-~~~~~~-~~~~~~T~   69 (119)
                      ++|++||+++|+||++..+...+.... ...  .+......|+  +|+|.++ .   .|++..+ .+.+.. .......+
T Consensus       169 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~~~~  248 (357)
T TIGR03539       169 AWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHAGL  248 (357)
T ss_pred             HHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHhhccc
Confidence            478999999999999865543232111 110  0111001233  8999975 2   2565543 232211 11112233


Q ss_pred             CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..++++..++.+.|+.-.. .+.+.+++++-+++.+.|++
T Consensus       249 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~  288 (357)
T TIGR03539       249 MVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK  288 (357)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666555532110 12334455555566666655

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=97.34  E-value=0.00021  Score=55.42  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=56.8

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cc-ccccc-ccccccc-cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GG-YFLKP-EFVPQQA-YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG-~~~~~-~~~~~~~-~~~~~T~   69 (119)
                      ++|++||+++|+||++. |+  .....   ..|    .|++  .+.|.+++     || ++..+ .+.+... .....+.
T Consensus       161 ~la~~~gi~livD~t~a~~~--~~~~l---~~G----aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~  231 (385)
T PRK08574        161 KAAKELGAILVVDNTFATPL--LYRPL---RHG----ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGT  231 (385)
T ss_pred             HHHHHcCCEEEEECCCCccc--cCChh---hhC----CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCC
Confidence            47999999999999984 32  11111   123    5766  78999952     46 33322 2222111 1111223


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|..++.++..|+.+..  ..++..++..++.+.|++
T Consensus       232 ~~~p~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L~~  268 (385)
T PRK08574        232 IMQPFEAYLVLRGLKTLEV--RFERQCRNAMAIAEFLSE  268 (385)
T ss_pred             CCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHHHc
Confidence            6778888888888777642  445555666677666653

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=97.34  E-value=0.00042  Score=52.58  Aligned_cols=101  Identities=15%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~   74 (119)
                      |++++.++|+||+..-|.. .... .   .+...++++   +|||.+| .|   ||.+.+ .+.+..... ...+..+.+
T Consensus       159 ~~~~~~~vI~DEay~~~~~-~~s~-~---~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~-~~~~~vs~~  232 (339)
T PRK06959        159 LAARGGTLIVDEAFADTLP-AASL-A---AHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDA-LGAWTVSGP  232 (339)
T ss_pred             HHHcCCEEEEECCCccCCC-cccc-h---hccCCCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHh-cCCCCCcHH
Confidence            5678999999999765521 1111 1   111124443   8999997 56   776653 233211100 123345666


Q ss_pred             HHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +..++.++|+--+ .+..++++++.-+++.+.|+++
T Consensus       233 ~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  268 (339)
T PRK06959        233 ARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH  268 (339)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6666766664211 1234455666666777777665

>PRK07503 methionine gamma-lyase; Provisional

Probab=97.33  E-value=0.00048  Score=53.67  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc---cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA---YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~---~~~~~T~   69 (119)
                      ++|++||+++|+|+++.. +..+..     .+..  +|++  .++|.+++     ||+++.+ .+....+   .......
T Consensus       174 ~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g--~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~  245 (403)
T PRK07503        174 EIAHGAGAKVVVDNTYCT-PYLQRP-----LELG--ADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGA  245 (403)
T ss_pred             HHHHHcCCEEEEECCCcc-cccCCc-----hhhC--CCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCC
Confidence            479999999999999852 122222     1222  6876  68899963     4665532 2322111   0111234


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|+.++.++..|+.+..  ..++..++...+.+.|++
T Consensus       246 ~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~~a~~L~~  282 (403)
T PRK07503        246 VMSPFDAFLLMRGLKTLAL--RMDRHCASAQAVAEWLAR  282 (403)
T ss_pred             CCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHh
Confidence            6789988888877776642  334444666666666654

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=97.32  E-value=0.00026  Score=55.08  Aligned_cols=97  Identities=15%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-ccc-ceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-QAY-RVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~~~-~~~~T~   69 (119)
                      ++|+++|+++|+||++. ++  .....   .+|    .|++  .++|.+++     ||+++.+ .+... ... ......
T Consensus       174 ~la~~~gi~lvvD~a~a~~~--~~~~~---~~g----aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~  244 (398)
T PRK07504        174 KIANQAGAKLVVDNVFATPL--FQKPL---ELG----AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGP  244 (398)
T ss_pred             HHHHHcCCEEEEECCccccc--cCCch---hhC----CCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCC
Confidence            47999999999999985 32  11111   123    6776  67898852     4555542 22211 110 111122


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|..++.++..|+.+..  ..++.+++.+.+.+.|++
T Consensus       245 ~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L~~  281 (398)
T PRK07504        245 SLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFLAG  281 (398)
T ss_pred             CCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHc
Confidence            5788998888888888743  445556777777777764

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=97.32  E-value=0.00062  Score=51.35  Aligned_cols=104  Identities=22%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             hhhhh-CCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-cccccc-cc-ceeeccCC
Q psy4800           2 YEKYH-GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQQ-AY-RVFNTWMG   71 (119)
Q Consensus         2 l~~~~-~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~~-~~-~~~~T~~~   71 (119)
                      +++++ ++++|+||++..|+.  ... ....... ...++  +|+|.++ .|   |++..+ .+.+.. .. ....++..
T Consensus       169 l~~~~~~~~livDe~y~~~~~--~~~-~~~~~~~-~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~~~  244 (353)
T PRK05387        169 ILAANPDSVVVIDEAYVDFGG--ESA-IPLIDRY-PNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPL  244 (353)
T ss_pred             HHHhCCCcEEEEeCcccccCC--cch-HHHHhhC-CCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCCCc
Confidence            45554 999999999865632  111 1111111 12233  8999986 45   666543 232211 11 11234456


Q ss_pred             CHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++..++.+.|+.-+ -++..++++++-+++.+.|++.
T Consensus       245 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (353)
T PRK05387        245 DRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL  283 (353)
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6777766666664211 0234455666666777777654

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=97.28  E-value=0.00082  Score=51.83  Aligned_cols=108  Identities=9%  Similarity=0.016  Sum_probs=51.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhccC----cccccc-------cccccccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQLG----GYFLKP-------EFVPQQAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg~g----G~~~~~-------~~~~~~~~~~~   66 (119)
                      ++|++||+++|+||+...|-..+.... ....+.....++   +|||.++..    |+++..       .+.........
T Consensus       195 ~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~  273 (401)
T TIGR01264       195 AVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ  273 (401)
T ss_pred             HHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh
Confidence            478999999999999876632332111 111222001233   899985422    444432       11111111111


Q ss_pred             eccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+++.++++..++.+.|+--.+   ++.+++++++-+++.+.|+++
T Consensus       274 ~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~  319 (401)
T TIGR01264       274 RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV  319 (401)
T ss_pred             ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2334466666666666642111   122334445555555666553

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=97.27  E-value=0.00045  Score=53.48  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--ccccccc-ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQ-AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~-~~~~~~T~   69 (119)
                      ++|+++|+++|+||++. +...  ..     ....  +|++  +++|.+++     +|++..  ..+.... ......+.
T Consensus       160 ~la~~~g~~vvvD~a~~~~~~~--~p-----l~~g--aDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~  230 (382)
T TIGR02080       160 HLAKAVGAVVVVDNTFLSPALQ--NP-----LALG--ADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGV  230 (382)
T ss_pred             HHHHHcCCEEEEECCCcccccC--Cc-----hhhC--CCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCC
Confidence            47899999999999984 2211  11     1122  6776  89998842     354432  2222211 11122233


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|+.+..++..|+.+..  ..++..++...+.+.|++
T Consensus       231 ~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a~~L~~  267 (382)
T TIGR02080       231 TGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIVEYLQT  267 (382)
T ss_pred             CCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHHHh
Confidence            6789998888777776643  345566777777776664

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=97.25  E-value=0.00097  Score=49.97  Aligned_cols=91  Identities=15%  Similarity=-0.028  Sum_probs=49.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhccCccccccccccccccceeeccCCCHHHHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLL   78 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~gG~~~~~~~~~~~~~~~~~T~~~~p~~~a~   78 (119)
                      ++|++||+++++|+++.++............++ ...|.+  ++.|.++ +++-.+-.+..                ...
T Consensus       172 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~d~~~~s~~K~l~-~p~g~g~~~~~----------------~~~  233 (345)
T cd06450         172 DLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGI-ERVDSISVDPHKYGL-VPLGCSAVLVR----------------ALK  233 (345)
T ss_pred             HHHHHhCCeEEEechhhHHHhhChhhHHHhcCc-cccCEEEEchhHhhC-CCcchHHHHHH----------------HHH
Confidence            479999999999999864311111100001121 126755  6889873 21111100111                344


Q ss_pred             HHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          79 LKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        79 a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++++.+...   +..++..++.+++++.|+++
T Consensus       234 ~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~  267 (345)
T cd06450         234 LWATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD  267 (345)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45556666543   45566777888888877764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00084  Score=51.70  Aligned_cols=100  Identities=20%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~   74 (119)
                      |.+ +.++|+||+..=|..  .- ...... . .++++   ||||+.| .|   ||.+++ .+.... ...-..|..|-+
T Consensus       174 ~~~-~~~vVvDEAY~eF~~--~~-~~~l~~-~-~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l-~~vr~p~~v~~~  246 (356)
T COG0079         174 LPE-GGLVVIDEAYIEFSP--ES-SLELLK-Y-PPNLIVLRTFSKAFGLAGLRVGYAIANPELIAAL-NKVRPPFNVSSP  246 (356)
T ss_pred             CCC-CcEEEEeCchhhcCC--ch-hhhhcc-C-CCCEEEEEecHHhhhcchhceeeccCCHHHHHHH-HHhcCCCCCCHH
Confidence            345 899999999765643  11 111112 2 23354   9999987 33   565543 232210 011123455677


Q ss_pred             HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+++.++|+--+. .+..+++.+.-+++.+.|+.+
T Consensus       247 a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~  282 (356)
T COG0079         247 ALAAAIAALRDADYLEESVERIREERERLYAALKAL  282 (356)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77777777654321 123334444445555555554

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=97.23  E-value=0.00095  Score=51.80  Aligned_cols=107  Identities=15%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE--EEchhhccC----ccccc-------ccccccccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV--TFSKKMQLG----GYFLK-------PEFVPQQAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~--t~gK~lg~g----G~~~~-------~~~~~~~~~~~~   66 (119)
                      ++|++||+++|+||+...|-..+.. .....+.-. .+-|+  +|||.+|..    |++..       ..+.........
T Consensus       204 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~  282 (412)
T PTZ00433        204 RLCEELRLPLISDEIYAGMVFNGATFTSVADFDTT-VPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGM  282 (412)
T ss_pred             HHHHHcCCeEEEeccccccccCCCCccchhhccCC-CceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhh
Confidence            4689999999999998765212211 111111101 12232  899998522    44442       122221111111


Q ss_pred             eccCCCHHHHHHHHHHHHH-Hhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          67 NTWMGDPGKVLLLKGIIDT-IHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~-i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+++.++++..++.+.|+- .+.  ++.+++++++-+.+.+.|++
T Consensus       283 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~  327 (412)
T PTZ00433        283 LVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE  327 (412)
T ss_pred             ccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2345667766666665542 100  12333444555555555544

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=97.23  E-value=0.0019  Score=51.35  Aligned_cols=114  Identities=18%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             ChhhhhCCEEEEcccccc----ccC---CCcch--hhhhc-CCCCCCCEEEEc-hhhc---cCcccccc--ccccccc--
Q psy4800           1 MYEKYHGSALLIDEVQTG----GGP---CGKFW--CHEHF-DLEESPDIVTFS-KKMQ---LGGYFLKP--EFVPQQA--   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG----~Gr---~G~~~--~~~~~-g~~~~pDi~t~g-K~lg---~gG~~~~~--~~~~~~~--   62 (119)
                      ++|++||+++|.|++|..    |..   .|...  ..+.. .+-...|+++++ |-.+   .||++..+  .+....+  
T Consensus       205 ~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~  284 (460)
T PRK13238        205 EIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTL  284 (460)
T ss_pred             HHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhc
Confidence            479999999999998742    111   01000  00000 000126877544 3222   26666633  3332211  


Q ss_pred             --cce-eeccCCCHHHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          63 --YRV-FNTWMGDPGKVLLLKG-IIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        63 --~~~-~~T~~~~p~~~a~a~a-~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                        ..+ +.||++++..+..|++ +|+-..+++..+...++-++|.+.|++.  ..|.+
T Consensus       285 ~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~--G~~~~  340 (460)
T PRK13238        285 CILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA--GVPIQ  340 (460)
T ss_pred             ccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC--CCCeE
Confidence              122 4588998887666655 3443333444443334458888888774  45543

>PRK07337 aminotransferase; Validated

Probab=97.22  E-value=0.00091  Score=51.31  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++|++++|+||+...+.-.+....  .....  ++++   +|+|.+| .|   |++... .+.+. ...........
T Consensus       190 ~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~--~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~  265 (388)
T PRK07337        190 EAVRARGGFTIVDEIYQGLSYDAAPVS--ALSLG--DDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICA  265 (388)
T ss_pred             HHHHHCCCEEEEeccccccccCCCCcC--hhhcc--CCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhccCC
Confidence            468899999999999876633222111  11222  4554   7899985 33   555543 23221 11111112234


Q ss_pred             CHHHHHHHHHHHHH--Hhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDT--IHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~--i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++..++.+.++-  +.. .+.++.++++-+++.+.|++.
T Consensus       266 s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~  306 (388)
T PRK07337        266 SALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL  306 (388)
T ss_pred             ChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555555555431  110 123344555555566666553

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=97.21  E-value=0.00045  Score=53.53  Aligned_cols=98  Identities=16%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccccc-eeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQAYR-VFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~~~-~~~T~~   70 (119)
                      ++|++||+++|+||++. .+..+..     ....  .|++  .++|.+++     ||+++. + .+....... ......
T Consensus       170 ~la~~~gi~lIvD~a~a-~~~~~~p-----~~~g--aDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~  241 (388)
T PRK07811        170 ELAHDAGAKVVVDNTFA-SPYLQQP-----LALG--ADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAV  241 (388)
T ss_pred             HHHHHcCCEEEEECCCC-ccccCCc-----hhhC--CcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            47999999999999974 2222222     1222  6776  67899952     355442 2 232211111 111224


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+..++..|+.+.  ...++..++...+.+.|++
T Consensus       242 ~s~~~a~l~~~~L~tl~--~R~~~~~~na~~la~~L~~  277 (388)
T PRK07811        242 PGPFDAYLTLRGLKTLA--VRMDRHSENAEAVAEFLAG  277 (388)
T ss_pred             CCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            56777666666655443  3445566777777777764

>PRK07582 cystathionine gamma-lyase; Validated

Probab=97.21  E-value=0.00047  Score=52.97  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--cccccccc-cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQA-YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~~-~~~~~T~   69 (119)
                      ++|+++|+++|+||++. .+|..  .     ..+.  +|++  ++.|.+++     +|++..  +.+.+... ......-
T Consensus       156 ~~a~~~g~~lvVD~t~~~~~~~~--p-----~~~g--~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~  226 (366)
T PRK07582        156 AAAHAAGALLVVDNTTATPLGQR--P-----LELG--ADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGA  226 (366)
T ss_pred             HHHHHcCCEEEEECCCCCccccC--c-----hhcC--CcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCC
Confidence            47899999999999973 23211  1     1222  6777  78999942     265553  22322111 1111222


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+|..+..++..|+.+.  -..++.+++...+.+.|++.
T Consensus       227 ~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~L~~~  264 (366)
T PRK07582        227 IPGPFEAWLAHRSLGTLG--LRFARQCANALAVAELLAGH  264 (366)
T ss_pred             CCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHHHHhC
Confidence            457888777766666543  23466777888888887753

>PLN02409 serine--glyoxylate aminotransaminase

Probab=97.21  E-value=0.0011  Score=51.42  Aligned_cols=100  Identities=18%  Similarity=0.215  Sum_probs=59.4

Q ss_pred             hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc---cCcccc-cccccc----cc-cccee-----
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ---LGGYFL-KPEFVP----QQ-AYRVF-----   66 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg---~gG~~~-~~~~~~----~~-~~~~~-----   66 (119)
                      |++||+++|+|++|+ +|..  ..-.+.++    .|++  ...|+++   +-|++. ++.+.+    .. ...++     
T Consensus       165 ~~~~g~~~vvD~v~s-~g~~--~id~~~~~----~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  237 (401)
T PLN02409        165 CAQHPALLLVDGVSS-IGAL--DFRMDEWG----VDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADY  237 (401)
T ss_pred             hhccCcEEEEEcccc-cCCc--cccccccC----ccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHH
Confidence            899999999999975 4321  11112122    6776  5689884   234433 222211    00 11111     


Q ss_pred             ------e---ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          67 ------N---TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ------~---T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                            .   .++.|.....+..++++.+.+.   +..++.+++.+++++.|+++
T Consensus       238 ~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~  292 (401)
T PLN02409        238 LKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW  292 (401)
T ss_pred             HHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                  1   2234455677788889987653   56677888889999888765

>PRK08363 alanine aminotransferase; Validated

Probab=97.20  E-value=0.0011  Score=51.10  Aligned_cols=106  Identities=12%  Similarity=0.065  Sum_probs=51.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---ccccc--c-cccc----cccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLK--P-EFVP----QQAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~--~-~~~~----~~~~~~~   66 (119)
                      ++|++||+++|+||++..+--.+..-......-.  ..++   +|||.++ .|   |++..  . .+..    .......
T Consensus       193 ~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~--~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~  270 (398)
T PRK08363        193 DIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKD--VPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLAR  270 (398)
T ss_pred             HHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcC--CcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhc
Confidence            4689999999999997654111221111111111  2233   8999964 34   56543  2 2211    1111111


Q ss_pred             eccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+++.++++..++.+.|+-..+  .+..++++++-+++.+.|++
T Consensus       271 ~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~  314 (398)
T PRK08363        271 IRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE  314 (398)
T ss_pred             ccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2344566666666555542111  12344455555666666654

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=97.19  E-value=0.0017  Score=49.44  Aligned_cols=105  Identities=15%  Similarity=0.106  Sum_probs=50.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---ccccc--cccccccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLK--PEFVPQQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~--~~~~~~~~~~~~~T~~   70 (119)
                      ++|++|++++|+||+...|-..+.. -.......  .+.++   +|||.+| .|   |+++.  ..+....... ...+.
T Consensus       168 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~-~~~~~  244 (354)
T PRK06358        168 DKCEKRNIYLIIDEAFMDFLEENETISMINYLEN--FKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQM-REPWS  244 (354)
T ss_pred             HHHHhcCCEEEEeCcccccCCCccchhHHHhccC--CCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHh-CCCCc
Confidence            3689999999999998765222211 11111221  13333   8999996 22   55543  2332211100 11334


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+.++..++.++|+--+. ++..+.+++.-+++.+.|++
T Consensus       245 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  283 (354)
T PRK06358        245 INTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE  283 (354)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455555555555531000 12233344444555555554

>PRK05957 aspartate aminotransferase; Provisional

Probab=97.18  E-value=0.0016  Score=50.17  Aligned_cols=19  Identities=21%  Similarity=-0.045  Sum_probs=16.4

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|+||+...+
T Consensus       187 ~~a~~~~~~li~De~y~~~  205 (389)
T PRK05957        187 QICAEHGIYHISDEAYEYF  205 (389)
T ss_pred             HHHHHcCcEEEEeccchhc
Confidence            4799999999999998654

>PRK12414 putative aminotransferase; Provisional

Probab=97.17  E-value=0.00067  Score=52.11  Aligned_cols=107  Identities=21%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch--hhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW--CHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~--~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~   69 (119)
                      ++|++|++++|+||++.-+--.+...  .....+..  ..++   +|||.+| .|   |++..+ .+... .......++
T Consensus       189 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~--~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~~  266 (384)
T PRK12414        189 QLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELA--ERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVF  266 (384)
T ss_pred             HHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCcc--CcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhheec
Confidence            36899999999999976431112111  11111211  1222   8999996 44   565543 23221 111112344


Q ss_pred             CCCHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+.++..++.+.|+--. ..+..+.++++-+.+.+.|++.
T Consensus       267 ~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  307 (384)
T PRK12414        267 SADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS  307 (384)
T ss_pred             CCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            555666555555443100 0123444556666666666653

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=97.14  E-value=0.00061  Score=53.05  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-c-hhhhhcCC-CCCCCEEEEchhhc-cC---cccccc--ccccccc-cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-F-WCHEHFDL-EESPDIVTFSKKMQ-LG---GYFLKP--EFVPQQA-YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~-~~~~~~g~-~~~pDi~t~gK~lg-~g---G~~~~~--~~~~~~~-~~~~~T~~   70 (119)
                      ++|++||+++|.||+..++--.|. . ...+..+. +...-+-.|||..+ +|   |+++..  .+.+... .....+++
T Consensus       190 ~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~  269 (393)
T COG0436         190 ELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC  269 (393)
T ss_pred             HHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccC
Confidence            479999999999999998744453 1 11111111 00012237999987 33   666644  3443222 22234546


Q ss_pred             CCHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN----ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~----~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+.++-.++.++|+--.+    +..++..+++-+.+.+.|.++
T Consensus       270 ~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~  312 (393)
T COG0436         270 APTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEI  312 (393)
T ss_pred             CCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677777777777764321    112234556666666777654

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=97.14  E-value=0.00044  Score=53.91  Aligned_cols=98  Identities=13%  Similarity=0.084  Sum_probs=57.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-cccc-eeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-QAYR-VFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-~~~~-~~~T~~   70 (119)
                      ++|++||+++|+||++. .+-.....   ..|    .|++  .+.|.+++     ||+++.+ ..... .... ......
T Consensus       179 ~la~~~g~~vivD~a~a-~~~~~~~~---~~g----aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~  250 (403)
T PRK07810        179 ELAHAAGAKVVLDNVFA-TPLLQRGL---PLG----ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  250 (403)
T ss_pred             HHHHHcCCEEEEECCCC-ccccCChh---hcC----CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            47999999999999974 21111111   123    6776  68898852     4666533 22211 1111 111225


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..++.++..|+.+.  ...++-.++..++.+.|++
T Consensus       251 ~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~L~~  286 (403)
T PRK07810        251 LSAFNAWVLLKGLETLA--LRVRHSNASALRIAEFLEG  286 (403)
T ss_pred             CCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHhc
Confidence            78898888888887764  3445556666666666654

>PRK06234 methionine gamma-lyase; Provisional

Probab=97.12  E-value=0.0008  Score=52.33  Aligned_cols=98  Identities=13%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             Chhhhh--CCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc---cceee
Q psy4800           1 MYEKYH--GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA---YRVFN   67 (119)
Q Consensus         1 ~l~~~~--~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~---~~~~~   67 (119)
                      ++|++|  |+++|+||++. .+..+..     .+..  .|++  .++|.+++     ||++..+ .+....+   .....
T Consensus       173 ~la~~~~~~i~livDea~~-~~~~~~~-----l~~g--~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~  244 (400)
T PRK06234        173 NIAHENNKECLVFVDNTFC-TPYIQRP-----LQLG--ADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMT  244 (400)
T ss_pred             HHHHhcCCCCEEEEECCCC-chhcCCc-----hhhC--CcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhc
Confidence            478887  99999999974 2222221     1222  6776  78899852     4766543 3322111   11112


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +...+|..+..++..|+.+.  ...++.+++.+++.+.|++
T Consensus       245 g~~l~p~~a~l~~~~l~tl~--~r~~~~~~na~~~a~~L~~  283 (400)
T PRK06234        245 GSVIGPFEAFLIIRGMKTLQ--IRMEKHCKNAMKVAKFLES  283 (400)
T ss_pred             CCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHc
Confidence            34678998888877776553  3455666777777777654

>PRK05968 hypothetical protein; Provisional

Probab=97.09  E-value=0.00067  Score=52.58  Aligned_cols=96  Identities=16%  Similarity=0.056  Sum_probs=55.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc----cccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ----QAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~----~~~~~~~T   68 (119)
                      ++|++||+++|+|+++.. +......   ..|    .|++  ++.|.+++     ||++..+ .+...    .....+  
T Consensus       171 ~la~~~gi~vivD~a~a~-~~~~~p~---~~g----~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g--  240 (389)
T PRK05968        171 ALAKRHGVVTMIDNSWAS-PVFQRPI---TLG----VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLG--  240 (389)
T ss_pred             HHHHHcCCEEEEECCCcc-hhccCch---hcC----CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCC--
Confidence            478999999999999742 1111111   123    5766  78998852     4655532 22221    111122  


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ...+|..++..+..|+.+  +...++-.++.+++.+.|++
T Consensus       241 ~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L~~  278 (389)
T PRK05968        241 AKLSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRLKA  278 (389)
T ss_pred             CCCChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHh
Confidence            256788888777776665  33445555667777777765

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=97.09  E-value=0.0012  Score=50.68  Aligned_cols=101  Identities=14%  Similarity=0.086  Sum_probs=59.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCcc-cccc-ccc-------ccc--c-
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGY-FLKP-EFV-------PQQ--A-   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~-~~~~-~~~-------~~~--~-   62 (119)
                      ++|++||+++|.|++|+ +|..-.+   ...|--  -|+.+||    |.++  .||. +..+ .+.       +..  + 
T Consensus       140 ~la~~~~i~vIeD~a~a-~g~~~~~---~~~g~~--~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~  213 (375)
T PRK11706        140 ALAKKHNLFVVEDAAQG-VMSTYKG---RALGTI--GHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRS  213 (375)
T ss_pred             HHHHHcCCEEEEECccc-cccccCC---eeeecC--cCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcc
Confidence            47999999999999975 4432100   112222  5888888    9994  3454 4322 221       110  0 


Q ss_pred             ------------cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ------------YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ------------~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                  ...+.++-.+.+.++.+++-|+.+++  ..++-+++.+++++.|..+
T Consensus       214 ~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~--~~~~R~~~~~~~~~~L~~~  270 (375)
T PRK11706        214 QFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADR--INQRRLALWQRYYDALAPL  270 (375)
T ss_pred             hhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCC
Confidence                        00123444567788888888877743  4455667777777777665

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=97.09  E-value=0.00064  Score=52.19  Aligned_cols=97  Identities=16%  Similarity=0.110  Sum_probs=55.1

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc--cccccc-ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP--EFVPQQ-AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~--~~~~~~-~~~~~~T~   69 (119)
                      ++|++||+++|+||++. ++  .....   ..+    .|++  +++|.+++     +|++...  .+.+.. ......+.
T Consensus       160 ~la~~~g~~lIvD~t~~~~~--~~~p~---~~g----~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~  230 (366)
T PRK08247        160 KIAKKHGLLLIVDNTFYTPV--LQRPL---EEG----ADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGA  230 (366)
T ss_pred             HHHHHcCCEEEEECCCcccc--ccCch---hcC----CcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCC
Confidence            47999999999999973 22  11111   112    5766  79999952     4555432  232211 11112233


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|..+..+...|+.+.  ...++.+++.+.+.+.|++
T Consensus       231 ~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~~L~~  267 (366)
T PRK08247        231 VLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAAFLNE  267 (366)
T ss_pred             CCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            567877777666666443  2334456676777777765

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.08  E-value=0.0013  Score=51.77  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cccc--cc-ccc------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFV--PQ-QAY------   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~--~~-~~~------   63 (119)
                      ++|++||+++|+||++. .+....     .....  +|++  ++.|.+++     ||+++. +.+.  .. ...      
T Consensus       167 ~la~~~~i~vVvD~a~a-~~~~~~-----p~~~g--aDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~  238 (425)
T PRK06084        167 DAAHRHGVPLIVDNTVA-TPVLCR-----PFEHG--ADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTP  238 (425)
T ss_pred             HHHHHcCCEEEEECCCc-ccccCC-----hhhcC--CCEEEECchhcccccccceeEEEEeCCccchhhccccccccccC
Confidence            47999999999999975 222221     12222  7877  78999852     455543 2110  00 000      


Q ss_pred             --------------------------ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          64 --------------------------RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        64 --------------------------~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                                                ....-...+|..+...+..|+.+.  ...++-+++...+.+.|++
T Consensus       239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~--~R~~~~~~na~~la~~L~~  307 (425)
T PRK06084        239 DPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLA--LRMERHTENALKVARYLQQ  307 (425)
T ss_pred             CcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHh
Confidence                                      001112467777777766666653  3455666777777777765

>PLN02187 rooty/superroot1

Probab=97.05  E-value=0.0025  Score=50.47  Aligned_cols=19  Identities=21%  Similarity=0.170  Sum_probs=16.4

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||++..+
T Consensus       231 ~~a~~~~i~iI~DE~Y~~l  249 (462)
T PLN02187        231 ETARKLGIMVISDEVYDRT  249 (462)
T ss_pred             HHHHHCCCEEEEecccccc
Confidence            4789999999999998764

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=97.04  E-value=0.0028  Score=48.99  Aligned_cols=106  Identities=8%  Similarity=0.053  Sum_probs=51.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCCCCCCCEE---EEchhhccC----ccccc--c-c-----cccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLEESPDIV---TFSKKMQLG----GYFLK--P-E-----FVPQQAYR   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pDi~---t~gK~lg~g----G~~~~--~-~-----~~~~~~~~   64 (119)
                      ++|++||+++|+||++..|-..+..+ ...  .+...+.++   +|+|.++..    |+++.  . .     +.......
T Consensus       196 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~  273 (403)
T TIGR01265       196 EVARKLGIPIIADEIYGHMVFGDAPFIPMA--SFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNL  273 (403)
T ss_pred             HHHHHCCCEEEEEccccccccCCCCccchh--hhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHH
Confidence            47899999999999987663233211 111  112112333   899985422    44432  1 1     11111111


Q ss_pred             eeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHh
Q psy4800          65 VFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        65 ~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ...+.+.++++-.++.+.|+--.+   ++.+++++++-+++.+.|+.
T Consensus       274 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  320 (403)
T TIGR01265       274 LQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD  320 (403)
T ss_pred             hhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            112334566666666566542111   12334455555556666654

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=97.03  E-value=0.0014  Score=50.27  Aligned_cols=19  Identities=16%  Similarity=0.036  Sum_probs=16.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||+..-|
T Consensus       192 ~~a~~~~~~ii~De~Y~~~  210 (388)
T PRK07366        192 AFCQQHDLVLVHDFPYVDL  210 (388)
T ss_pred             HHHHHcCeEEEEecchhhc
Confidence            3789999999999998654

>PRK06207 aspartate aminotransferase; Provisional

Probab=97.00  E-value=0.003  Score=48.99  Aligned_cols=19  Identities=11%  Similarity=0.293  Sum_probs=16.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||+..-+
T Consensus       205 ~~a~~~~~~iI~De~Y~~~  223 (405)
T PRK06207        205 ALARRYGATVIVDQLYSRL  223 (405)
T ss_pred             HHHHHcCCEEEEecccccc
Confidence            4689999999999998754

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=96.99  E-value=0.0018  Score=50.18  Aligned_cols=19  Identities=32%  Similarity=0.356  Sum_probs=16.5

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||++..|
T Consensus       203 ~~a~~~~~~iI~De~Y~~~  221 (409)
T PRK07590        203 DYAKENGSLILFDAAYEAF  221 (409)
T ss_pred             HHHHHcCeEEEEEccchhh
Confidence            4789999999999998755

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.99  E-value=0.0027  Score=49.85  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=26.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|++||+++|+||+|..    +.  ........  +|++  .+.|.++
T Consensus       172 ~la~~~gi~livD~a~a~----~~--~~~pl~~g--aDivv~S~tK~lg  212 (427)
T PRK05994        172 EVAHRAGLPLIVDNTLAS----PY--LIRPIEHG--ADIVVHSLTKFLG  212 (427)
T ss_pred             HHHHHcCCEEEEECCccc----cc--cCCccccC--CcEEEEcCccccC
Confidence            479999999999999851    11  11222333  8987  5889885

>PLN02368 alanine transaminase

Probab=96.99  E-value=0.0014  Score=51.30  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=54.8

Q ss_pred             ChhhhhCCEEEEccccccccCCC--cc-hhhhhc-CCC----CCCCEE---EEchhh-c-cC---cccc----ccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--KF-WCHEHF-DLE----ESPDIV---TFSKKM-Q-LG---GYFL----KPEFVPQ   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~~-~~~~~~-g~~----~~pDi~---t~gK~l-g-~g---G~~~----~~~~~~~   60 (119)
                      ++|++||+++|.||+..-+--.+  .. ...+.. ++.    ..+.++   +|||++ + .|   ||+.    ...+...
T Consensus       237 ~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~  316 (407)
T PLN02368        237 KFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEE  316 (407)
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHH
Confidence            47999999999999986541112  11 111110 111    112344   789997 4 22   5654    2233321


Q ss_pred             cccceeeccCCCHHHHHHHHHHHHH-----------Hhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 QAYRVFNTWMGDPGKVLLLKGIIDT-----------IHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ~~~~~~~T~~~~p~~~a~a~a~l~~-----------i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .......++..|.++-.++.++|+-           .++ .++.+..+++-+++.+.|+++
T Consensus       317 ~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~  377 (407)
T PLN02368        317 IYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC  377 (407)
T ss_pred             HHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1111112345566666667666641           111 123445566666666766654

>PRK08636 aspartate aminotransferase; Provisional

Probab=96.98  E-value=0.0018  Score=50.03  Aligned_cols=19  Identities=11%  Similarity=-0.081  Sum_probs=16.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||+...+
T Consensus       202 ~~a~~~~~~II~De~Y~~l  220 (403)
T PRK08636        202 ALAKKERFYIISDIAYADI  220 (403)
T ss_pred             HHHHHcCcEEEEeccchhh
Confidence            4799999999999997654

>PRK09105 putative aminotransferase; Provisional

Probab=96.97  E-value=0.0031  Score=48.42  Aligned_cols=95  Identities=16%  Similarity=0.050  Sum_probs=49.5

Q ss_pred             hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800           6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL   77 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a   77 (119)
                      +++++|+||++..|+. +. ...+..+..  ++++   +|||.+| .|   |+++.+ .+.+.....  .++..+..+..
T Consensus       196 ~~~~lIvDEaY~~f~~-~~-s~~~~~~~~--~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~--~~~~~~~~~~~  269 (370)
T PRK09105        196 AGSVLLVDEAYIHFSD-AP-SVVDLVAQR--KDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF--GHNPLPVPAAA  269 (370)
T ss_pred             CCcEEEEECchHHhcc-Cc-chHHHHhhC--CCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc--CCCCcCHHHHH
Confidence            5899999999865632 11 111111212  5544   8999997 45   666643 232211111  22234555555


Q ss_pred             HHHHHHHHHhhhcH----HHHHHHHHHHHHHHHHhh
Q psy4800          78 LLKGIIDTIHNENL----LDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        78 ~a~a~l~~i~~~~~----~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.++|+   ++++    .++++++-+++.+.|+++
T Consensus       270 aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~  302 (370)
T PRK09105        270 AGLASLR---DPKLVPQRRAENAAVREDTIAWLKKK  302 (370)
T ss_pred             HHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5555553   2333    344555556666666653

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0056  Score=47.72  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc---cCcccc-ccc----ccccc-ccce----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ---LGGYFL-KPE----FVPQQ-AYRV----   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg---~gG~~~-~~~----~~~~~-~~~~----   65 (119)
                      ++|++||+++|+|=| +.+|  |...-.+.+|    .|+++  -=|+|+   +=+++. ++.    +.... +.++    
T Consensus       155 ~~~k~~g~l~iVDaV-sS~G--g~~~~vd~wg----iDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~  227 (383)
T COG0075         155 KAAKEHGALLIVDAV-SSLG--GEPLKVDEWG----IDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLK  227 (383)
T ss_pred             HHHHHcCCEEEEEec-ccCC--CcccchhhcC----ccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHH
Confidence            478999999999998 6675  3344455666    46664  448884   112222 111    11000 0000    


Q ss_pred             ---------ee-ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 ---------FN-TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ---------~~-T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                               .. -|..+....-+-.++|+.+.++   +..+|-+++++.+++.++++
T Consensus       228 ~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al  284 (383)
T COG0075         228 KWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL  284 (383)
T ss_pred             HHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                     11 2223334556667899998876   45667788999999999876

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=96.95  E-value=0.0025  Score=49.10  Aligned_cols=19  Identities=16%  Similarity=0.046  Sum_probs=16.2

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||+..-+
T Consensus       193 ~~a~~~~~~ii~De~y~~~  211 (396)
T PRK09147        193 ALSDRYGFVIASDECYSEI  211 (396)
T ss_pred             HHHHHcCeEEEeecccccc
Confidence            4789999999999997644

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=96.95  E-value=0.0041  Score=47.72  Aligned_cols=100  Identities=11%  Similarity=0.123  Sum_probs=51.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc--cCcccccc-ccccccccc---eeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ--LGGYFLKP-EFVPQQAYR---VFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg--~gG~~~~~-~~~~~~~~~---~~~T~~~~   72 (119)
                      ++|++||+++|+|++|. .  ...  ....+|    .|++++  .|.++  .+|++..+ .+....+..   ....+...
T Consensus       173 ~~a~~~gi~vivD~a~~-~--~~~--~~~~~g----~D~~~~S~~K~l~gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~  243 (363)
T TIGR01437       173 QVAQEHNLPLIVDAAAE-E--DLQ--KYYRLG----ADLVIYSGAKAIEGPTSGLVLGKKKYIEWVKLQSKGIGRAMKVG  243 (363)
T ss_pred             HHHHHcCCeEEEECCCC-C--chH--HHHHcC----CCEEEEeCCcccCCCceEEEEEcHHHHHHHHhccCCCcceeccC
Confidence            47999999999999985 1  111  111123    688754  59874  35665532 222211100   00011111


Q ss_pred             HHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...++...++++.+.+  .+..++.+++.++++++|+++
T Consensus       244 ~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i  282 (363)
T TIGR01437       244 KENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTL  282 (363)
T ss_pred             HHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcC
Confidence            1234555556766653  233334444555788888765

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=96.92  E-value=0.0031  Score=49.19  Aligned_cols=80  Identities=8%  Similarity=-0.122  Sum_probs=40.6

Q ss_pred             Chhhhh-CCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhccC---cccccc-cccccc-ccceeeccCC
Q psy4800           1 MYEKYH-GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQLG---GYFLKP-EFVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~-~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg~g---G~~~~~-~~~~~~-~~~~~~T~~~   71 (119)
                      ++|++| ++++|.||+..-|-..+..   ...... .+.++   +|||.++.|   ||++.. .+.... ......++..
T Consensus       239 ~la~~~~~~~ii~De~Y~~~~~~~~~---~~~~~~-~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~~~~  314 (431)
T PRK15481        239 NLLARYPQVLVIIDDHFALLSSSPYH---SVIPQT-TQRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGTQWV  314 (431)
T ss_pred             HHHHhcCCceEEecCchhhhccCCCC---CCCcCC-CCCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccccCC
Confidence            368899 9999999997655211110   001111 13333   899999622   444432 222211 1111223345


Q ss_pred             CHHHHHHHHHHHH
Q psy4800          72 DPGKVLLLKGIID   84 (119)
Q Consensus        72 ~p~~~a~a~a~l~   84 (119)
                      ++++..++.+.|+
T Consensus       315 s~~~q~a~~~~l~  327 (431)
T PRK15481        315 SHLLQDLVYACLT  327 (431)
T ss_pred             CHHHHHHHHHHHh
Confidence            6676666666654

>KOG2862|consensus

Probab=96.90  E-value=0.0073  Score=46.04  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=61.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccc--ccc-----ccc-----------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFL--KPE-----FVP-----------   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~--~~~-----~~~-----------   59 (119)
                      ++|++|+++|++|-|- -+|  |.-|.++.+|+    |+.  --=|+|+ --|..+  .+.     +.+           
T Consensus       167 ~lc~k~~~lllVD~Va-Slg--gt~F~mDewgV----DvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd  239 (385)
T KOG2862|consen  167 ELCHKHEALLLVDTVA-SLG--GTEFEMDEWGV----DVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFD  239 (385)
T ss_pred             HHhhcCCeEEEEechh-hcC--Cccceehhhcc----cEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEe
Confidence            5899999999999994 454  45677777885    555  4558885 123322  111     110           


Q ss_pred             -----------ccccceeeccCCCHHH-HHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhhh
Q psy4800          60 -----------QQAYRVFNTWMGDPGK-VLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        60 -----------~~~~~~~~T~~~~p~~-~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l~  110 (119)
                                 ..+..+++|   .|+. .-.-+++|+.|-++.   ..++-++++++++..|+++.
T Consensus       240 ~~~~~~~wgc~~e~~~yhhT---~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~G  302 (385)
T KOG2862|consen  240 ILRLGNFWGCDGEPRAYHHT---PPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALG  302 (385)
T ss_pred             HHhhcchhccCCcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                       112223334   3443 334567888887654   44567899999999999863

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=96.87  E-value=0.0044  Score=48.00  Aligned_cols=107  Identities=16%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             ChhhhhCCEEEEccccccccCCC-cchhhhhcCCCC-CCC--EE--EEchhhccCccccccccccc--------ccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG-KFWCHEHFDLEE-SPD--IV--TFSKKMQLGGYFLKPEFVPQ--------QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G-~~~~~~~~g~~~-~pD--i~--t~gK~lg~gG~~~~~~~~~~--------~~~~~~   66 (119)
                      +||.+||+++|.||+|.=+=-.| +...+  ..+.. ..|  |.  .-+|+....|.-.+..+...        .+..-.
T Consensus       185 elc~kh~v~VISDEIHaDlv~~g~~h~~~--a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~  262 (388)
T COG1168         185 ELCLRHGVRVISDEIHADLVLGGHKHIPF--ASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRN  262 (388)
T ss_pred             HHHHHcCCEEEeecccccccccCCCccch--hhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHh
Confidence            58999999999999997652334 22111  22320 012  22  33688754444333222111        111112


Q ss_pred             eccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...+.|.+++.+..++.+.=+.  +++.+-++.+-+++.+.+++.
T Consensus       263 ~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~  307 (388)
T COG1168         263 GLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH  307 (388)
T ss_pred             cCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2336788888888888765433  245566778888888888765

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=96.87  E-value=0.0017  Score=50.77  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--ccccccc-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQ-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~-~~~~~~T~~   70 (119)
                      ++|++||+++|+||++..-... ..     ....  .|++  ...|.+++     +|+++.  +.+.+.. .......+.
T Consensus       169 ~la~~~gi~vIvD~a~a~~~~~-~p-----l~~g--aDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~  240 (405)
T PRK08776        169 EAAHKVGALTVVDNTFLSPALQ-KP-----LEFG--ADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT  240 (405)
T ss_pred             HHHHHcCCEEEEECCCcccccC-Cc-----cccc--CCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            4789999999999998521111 11     1122  6777  56788841     344432  2232211 111112234


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|+.+...+..++.++  .+.++..++...+.+.|++
T Consensus       241 ~s~~~a~l~~~gl~tl~--~r~~~~~~na~~la~~L~~  276 (405)
T PRK08776        241 GSPFDAFLTLRGLRTLD--ARLRVHQENADAIAALLDG  276 (405)
T ss_pred             CCHHHHHHHHhhhCcHH--HHHHHHHHHHHHHHHHHHc
Confidence            68999888887776663  3556667777777776664

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=96.86  E-value=0.0065  Score=46.94  Aligned_cols=101  Identities=14%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc---cCccccc--cccc-------cc--cc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ---LGGYFLK--PEFV-------PQ--QA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg---~gG~~~~--~~~~-------~~--~~   62 (119)
                      ++|++||+++|.|++|+ +|..   +.-...|..  -|+.+||    |.+.   -||+++.  +++.       +.  ..
T Consensus       140 ~la~~~~i~vIeDaa~~-~g~~---~~~~~~g~~--~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~  213 (376)
T TIGR02379       140 ALANKHQLFVIEDAAQG-VMST---YKGRALGSI--GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNR  213 (376)
T ss_pred             HHHHHCCCEEEEECccc-cCCc---cCCcccCCC--CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCC
Confidence            47999999999999975 4321   111123332  5888898    8774   2565542  1111       10  00


Q ss_pred             ---------c----ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ---------Y----RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ---------~----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                               .    ..+..|-.+.+.++.+++.|+.+.+  ..++-+++.++..+.|..+
T Consensus       214 ~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~~L~~~  271 (376)
T TIGR02379       214 SQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQDALKPL  271 (376)
T ss_pred             ccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhccC
Confidence                     0    0233445667788888888888754  4444556666667777654

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=96.85  E-value=0.0043  Score=48.96  Aligned_cols=41  Identities=5%  Similarity=-0.061  Sum_probs=30.8

Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+-.+.+.+|.++.-|+.+++  ..++-+++.+++.+.|..+
T Consensus       288 ~n~rmsel~AAig~~qL~~l~~--~~~~R~~~a~~y~~~L~~~  328 (438)
T PRK15407        288 YNLKITDMQAAIGLAQLEKLPG--FIEARKANFAYLKEGLASL  328 (438)
T ss_pred             cccCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC
Confidence            3456788999999999988854  5566677777888888654

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=96.82  E-value=0.0011  Score=50.97  Aligned_cols=98  Identities=15%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccccce-eeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQAYRV-FNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~~~~-~~T~~   70 (119)
                      ++|+++|+++|+||++..    +..  ....+.-  .|++  .+.|.+++     ||.++. + .+.......+ .....
T Consensus       160 ~la~~~gi~vvvD~t~~~----~~~--~~pl~~g--aDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~  231 (364)
T PRK07269        160 KLAHAKGAKVIVDNTFYS----PIY--QRPIELG--ADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAV  231 (364)
T ss_pred             HHHHHcCCEEEEECCCcc----ccc--CCchhhC--CcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCC
Confidence            478999999999999521    111  1222323  7887  46688852     566553 2 2322111111 11235


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+..++..|+.+.  ...++-+++...+.+.|++
T Consensus       232 ~s~~~a~l~~~~L~tL~--~r~~~~~~na~~~a~~L~~  267 (364)
T PRK07269        232 LSPFDSYLLMRGLKTLS--LRMERSTANAQEVVAFLKK  267 (364)
T ss_pred             CCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            78999888888877663  3445556777777666653

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=96.82  E-value=0.0031  Score=47.91  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=47.5

Q ss_pred             hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~   74 (119)
                      |++ ++++|+||++.-|-.....  .....-  .+.++   +|+|++| .|   ||...+ .+.+.... ....|..+.+
T Consensus       174 ~~~-~~~vivDEay~~f~~~~s~--~~~~~~--~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~-~~~~~~v~~~  247 (351)
T PRK01688        174 TRG-KAIVVADEAYIEFCPQASL--AGWLAE--YPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLK-VIAPYPLSTP  247 (351)
T ss_pred             CCC-CcEEEEECchhhcCCCCCh--HHHHhh--CCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHh-ccCCCCCCHH
Confidence            444 6899999998656211111  111111  14543   8999997 44   665543 23221100 1112344555


Q ss_pred             HHHHHHHHHHHH--hh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTI--HN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i--~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+++.++|+--  +. .+..+.+.+.-+++.+.|+++
T Consensus       248 ~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  285 (351)
T PRK01688        248 VADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEI  285 (351)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            555665655421  00 112233444445666666554

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=96.81  E-value=0.0029  Score=48.65  Aligned_cols=108  Identities=10%  Similarity=0.010  Sum_probs=50.9

Q ss_pred             ChhhhhCCEEEEccccccccCCC--cc---h-hhhhcCCCCCCCEE---EEchhhc-cC---ccccccc-cccc-cccce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--KF---W-CHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKPE-FVPQ-QAYRV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~~---~-~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~~-~~~~-~~~~~   65 (119)
                      ++|++|++++|.||+..-+-..+  ..   . .....+....+.++   +|||.++ .|   |+++.+. +... .....
T Consensus       192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~  271 (393)
T TIGR03538       192 ELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRT  271 (393)
T ss_pred             HHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHH
Confidence            46899999999999986542111  11   1 11111111112233   8999764 34   5655432 3221 11111


Q ss_pred             eeccCCCHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..++..+++...++.+.+..-+ -.+..+.++++-+.+.+.|++
T Consensus       272 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~  315 (393)
T TIGR03538       272 YHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQ  315 (393)
T ss_pred             hhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2233456666666666653100 012233344444555555554

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=96.81  E-value=0.0032  Score=47.69  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=49.8

Q ss_pred             hhCCEEEEccccccccCCCcchh--hhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800           5 YHGSALLIDEVQTGGGPCGKFWC--HEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL   77 (119)
Q Consensus         5 ~~~~lli~DEv~tG~Gr~G~~~~--~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a   77 (119)
                      ++++++|.||+..-|.  +....  .+.+.-  ..-+-+|||.++ .|   |+++.+ .+........ .+++.++++..
T Consensus       165 ~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~--vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~-~~~~~~~~~q~  239 (335)
T PRK14808        165 KTGAFVALDEAYYEFH--GESYVDLLKKYEN--LAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR-LPFNVSYVSQM  239 (335)
T ss_pred             hcCCEEEEECchhhhc--CCchHHHHHhCCC--EEEEEechhhccCcccceEEEEeCHHHHHHHHHhc-CCCCCCHHHHH
Confidence            5799999999987662  21111  111110  022338999997 56   777653 2322110011 12344566666


Q ss_pred             HHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          78 LLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        78 ~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.++++..+. ++..+.+++.-+++.+.|+++
T Consensus       240 a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  272 (335)
T PRK14808        240 FAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66666653221 122333444445566666553

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=96.78  E-value=0.0062  Score=46.30  Aligned_cols=80  Identities=11%  Similarity=0.075  Sum_probs=39.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchh-hhhcCCCCCCCEE---EEchhhccC----cccccc-ccccccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEESPDIV---TFSKKMQLG----GYFLKP-EFVPQQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~pDi~---t~gK~lg~g----G~~~~~-~~~~~~~~~~~~T~~~   71 (119)
                      ++++++++ +|+||+...|-..+..-. .....-  .+.++   +|||.++..    |+++.. .+...... ....+..
T Consensus       172 ~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~--~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~-~~~~~~~  247 (360)
T PRK07392        172 PLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAE--YPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQ-WRDPWPV  247 (360)
T ss_pred             HHHHHCCE-EEEECchhhhccCccccchHHHhhc--CCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHh-hCCCCCC
Confidence            36788885 677999877633332101 111111  13333   899999623    344432 22221110 1123456


Q ss_pred             CHHHHHHHHHHHH
Q psy4800          72 DPGKVLLLKGIID   84 (119)
Q Consensus        72 ~p~~~a~a~a~l~   84 (119)
                      ++++..++.+.|+
T Consensus       248 s~~~q~~~~~~l~  260 (360)
T PRK07392        248 NGLAAAAAIAALA  260 (360)
T ss_pred             CHHHHHHHHHHhc
Confidence            7777777666654

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=96.76  E-value=0.0028  Score=48.58  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             hhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD   72 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~   72 (119)
                      +|++++ ++|+||++..|-..+.. -......  ..+.++   +|||.+| .|   ||++.+ .+.+.... ...++..|
T Consensus       179 ~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~--~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~-~~~~~~~~  254 (366)
T PRK01533        179 GISENT-LIVIDEAYYEYVTAKDFPETLPLLE--KHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNV-VRLPFNVS  254 (366)
T ss_pred             hCCCCC-EEEEEccHHHhhccccCcchhHHhc--cCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHH-hcCCCCcC
Confidence            466665 67789998655211110 0111111  113333   8999996 33   555543 23221111 11345677


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +++..++.++|+   ++++.+++++.-+.-++++.+
T Consensus       255 ~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~  287 (366)
T PRK01533        255 SLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYES  287 (366)
T ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH
Confidence            888787777773   344444443333333333333

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=96.74  E-value=0.0049  Score=49.02  Aligned_cols=49  Identities=24%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc---hh------hhhcCCCCCCCEEEEc--hhhc--cCccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF---WC------HEHFDLEESPDIVTFS--KKMQ--LGGYFLK   54 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~---~~------~~~~g~~~~pDi~t~g--K~lg--~gG~~~~   54 (119)
                      ++|++||+++|+|-.   .|..+..   +.      .+....  .+|++++|  |.+|  .+|++..
T Consensus       239 ~la~~~g~~vivD~~---sG~l~~~~~~gl~~~p~~~~~~~~--GaDiv~fSg~K~LgGp~~G~i~g  300 (454)
T TIGR00474       239 ALGREHGLPVMEDLG---SGSLVDLSRYGLPDEPTVQEVIAA--GVDLVTFSGDKLLGGPQAGIIVG  300 (454)
T ss_pred             HHHHHcCCeEEEECC---CcccccchhccCCCCcccccHhHc--CCCEEEecCccccCCCeEEEEEE
Confidence            479999999999953   3333221   11      111112  38999999  9995  3566543

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK04311 selenocysteine synthase; Provisional

Probab=96.73  E-value=0.0052  Score=49.01  Aligned_cols=52  Identities=23%  Similarity=0.245  Sum_probs=30.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch------hhhhcCCCCCCCEEEEc--hhhc--cCccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW------CHEHFDLEESPDIVTFS--KKMQ--LGGYFLK   54 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~------~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~   54 (119)
                      ++|++||+++|+|..+.-++..+.++      ..+....  .+|++++|  |.+|  .+|++..
T Consensus       244 ~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~--GaDiv~fSg~K~LgGp~~G~i~g  305 (464)
T PRK04311        244 ALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAA--GVDLVTFSGDKLLGGPQAGIIVG  305 (464)
T ss_pred             HHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhc--CCcEEEecCcccccCCceEEEEE
Confidence            47999999999999521122222111      1111112  28999988  9985  3565543

>PRK06107 aspartate aminotransferase; Provisional

Probab=96.73  E-value=0.0061  Score=47.12  Aligned_cols=106  Identities=11%  Similarity=0.029  Sum_probs=51.0

Q ss_pred             Chhhhh-CCEEEEccccccccCCCcc-hhhhhc--CCCCCCCEE---EEchhhc-cC---cccccc-cccccc-ccceee
Q psy4800           1 MYEKYH-GSALLIDEVQTGGGPCGKF-WCHEHF--DLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQ-AYRVFN   67 (119)
Q Consensus         1 ~l~~~~-~~lli~DEv~tG~Gr~G~~-~~~~~~--g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~-~~~~~~   67 (119)
                      ++|++| ++++|+||+...+.-.+.. ......  +..  ..++   +|+|.++ .|   |++... .+.+.. ......
T Consensus       193 ~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~--~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~  270 (402)
T PRK06107        193 DVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELR--DRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQS  270 (402)
T ss_pred             HHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCcc--CCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhc
Confidence            368898 9999999997644112211 111111  111  2344   6799996 33   454432 232211 111122


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +...++++..++...|+--+.  ++..++++++-+.+.+.|++
T Consensus       271 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  313 (402)
T PRK06107        271 SSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA  313 (402)
T ss_pred             ccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence            335566666666666631000  12233445555555666654

>PRK08354 putative aminotransferase; Provisional

Probab=96.73  E-value=0.0061  Score=45.55  Aligned_cols=46  Identities=24%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLK   54 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~   54 (119)
                      ++|++||+++|.||+...|- .+..      ... .+.++   +|||.++ .|   |+++.
T Consensus       144 ~~a~~~~~~li~De~y~~f~-~~~~------~~~-~~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        144 DAVEDRNALLILDEAFIDFV-KKPE------SPE-GENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             HHhhhcCcEEEEeCcchhcc-cccc------ccC-CCcEEEEeccHhhcCCccceeeeeee
Confidence            36889999999999987762 2211      111 13333   8999996 44   56554

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=96.72  E-value=0.0018  Score=50.01  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-cccccccc-ce-eecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQAY-RV-FNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~~-~~-~~T~   69 (119)
                      ++|++||+++|+|+++. .+-.....   .+|    +|++  ...|.+++     +|++.. + .+...... .. ..+ 
T Consensus       155 ~la~~~g~~vivD~a~~-~~~~~~~l---~~g----~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~-  225 (378)
T TIGR01329       155 EMAHAQNALVVVDNTMM-SPLLCNPL---ELG----ADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGS-  225 (378)
T ss_pred             HHHHHcCCEEEEECCCc-ccccCChh---hcC----CcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCC-
Confidence            47999999999999973 21111111   123    6876  67898852     455532 2 22121111 11 222 


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL  107 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~  107 (119)
                      ..+|..+...+..++.+.  ...++-.++...+.+.|+
T Consensus       226 ~~~~~~a~l~~~~l~tl~--~R~e~~~~na~~la~~L~  261 (378)
T TIGR01329       226 GLAPFDCWLLLRGIKTLA--IRIEKQQENARAIAMFLS  261 (378)
T ss_pred             cCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHH
Confidence            466776655444443332  344555666666666665

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=96.70  E-value=0.0031  Score=48.57  Aligned_cols=101  Identities=14%  Similarity=0.134  Sum_probs=56.7

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccccc--cccc-------cc-----
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP--EFVP-------QQ-----   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~--~~~~-------~~-----   61 (119)
                      ++|++||+++|+|++|+ |.-..|+.     .+-. ..|+..|+  |.+.  .||+++..  .+..       ..     
T Consensus       142 ~~a~~~gi~vi~D~a~a~g~~~~~~~-----~g~~-g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~  215 (379)
T PRK11658        142 AIGERYGIPVIEDAAHAVGTYYKGRH-----IGAR-GTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDA  215 (379)
T ss_pred             HHHHHcCCeEEEECCCccCCeECCee-----cCCC-CCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcch
Confidence            47999999999999986 43112211     1111 13556555  6563  36665531  2110       00     


Q ss_pred             ---------cc----ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 ---------AY----RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ---------~~----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                               +.    ..+..+..+.+.+|.++.-++.++  +..++-+++.+++++.|+++
T Consensus       216 ~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~--~~~~~r~~~a~~~~~~L~~~  274 (379)
T PRK11658        216 FDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLE--ALNARRREIAARYLQALADL  274 (379)
T ss_pred             hhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence                     00    011233456667777777776664  35566778888888888764

>PRK06855 aminotransferase; Validated

Probab=96.70  E-value=0.0033  Score=49.27  Aligned_cols=19  Identities=11%  Similarity=0.009  Sum_probs=16.8

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||+...+
T Consensus       198 ~~a~~~~~~II~De~Y~~l  216 (433)
T PRK06855        198 DIAREYDLFIICDEIYNNI  216 (433)
T ss_pred             HHHHHcCCEEEEecccccc
Confidence            4799999999999998765

>PLN02656 tyrosine transaminase

Probab=96.70  E-value=0.005  Score=47.78  Aligned_cols=19  Identities=16%  Similarity=-0.066  Sum_probs=16.6

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|+||+...|
T Consensus       196 ~~a~~~~~~ii~De~y~~~  214 (409)
T PLN02656        196 ETAEKLKILVIADEVYGHL  214 (409)
T ss_pred             HHHHHcCCEEEEehhhhhc
Confidence            4789999999999998765

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=96.69  E-value=0.0049  Score=46.78  Aligned_cols=102  Identities=11%  Similarity=0.075  Sum_probs=48.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~   72 (119)
                      ++|++++.++|+||++..|.  +.... ......  +.++   +|+|.+| .|   |+.+.+ .+....... ...+..+
T Consensus       172 ~l~~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~--~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~-~~~~~~~  245 (351)
T PRK14807        172 KIIEKSRGIVVVDEAYFEFY--GNTIV-DVINEF--ENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLV-KSPYNIN  245 (351)
T ss_pred             HHHHhCCCEEEEeCcchhhc--ccchH-HHhhhC--CCEEEEecchHhcccchhceeeeecCHHHHHHHHHc-cCCCCcC
Confidence            36778888999999986652  32111 111111  2333   8999996 44   666543 232211100 0112345


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +++..++.+.|+--.-++..++++++-+++.+.|++
T Consensus       246 ~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~  281 (351)
T PRK14807        246 SLSQVIALKVLRTGVLKERVNYILNERERLIKELSK  281 (351)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666555555554210012223344444445555543

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=96.68  E-value=0.002  Score=49.93  Aligned_cols=98  Identities=12%  Similarity=0.088  Sum_probs=51.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||++.. +......   ..|    +|++  .++|.+++     ||+++. +.+... ...........
T Consensus       170 ~la~~~gi~livD~t~~~-~~~~~pl---~~g----~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~  241 (390)
T PRK08133        170 EIAHAAGALLVVDNCFCT-PALQQPL---KLG----ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTL  241 (390)
T ss_pred             HHHHHcCCEEEEECCCcc-cccCCch---hhC----CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCC
Confidence            479999999999999741 1111111   122    5776  67898852     355543 222211 11111112245


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +|..+..++..++.+.  ...++..++...+.+.|++
T Consensus       242 ~~~~a~~~l~gl~tl~--~R~~~~~~~a~~la~~L~~  276 (390)
T PRK08133        242 SPFNAWVFLKGLETLS--LRMEAHSANALALAEWLEA  276 (390)
T ss_pred             CHHHHHHHHcccchHH--HHHHHHHHHHHHHHHHHHh
Confidence            6777666665655443  2334444555555555554

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=96.63  E-value=0.0061  Score=48.38  Aligned_cols=109  Identities=11%  Similarity=0.051  Sum_probs=55.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhh--cCCCC-CCCEEE--Echhhc---cCccccc--cccccccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEH--FDLEE-SPDIVT--FSKKMQ---LGGYFLK--PEFVPQQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~--~g~~~-~pDi~t--~gK~lg---~gG~~~~--~~~~~~~~~~~~~T~~   70 (119)
                      ++|++||+++|+|+++. ++   .....+.  .+... ..|+++  +.|.+.   .||++..  +.+.......+.....
T Consensus       229 ~la~k~gI~lIvDaAyg-~~---~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~~~  304 (444)
T TIGR03531       229 KICANYDIPHIVNNAYG-LQ---SNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGRAS  304 (444)
T ss_pred             HHHHHcCCEEEEECcCc-Cc---ChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCCCC
Confidence            48999999999999974 21   1111111  12211 257774  568774   2444432  2232211111111212


Q ss_pred             CCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          71 GDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ..| ...+..+.+ .+-.   +++.++..++.+++.+.|+++..++..
T Consensus       305 ~s~-~~~~~~~ll-~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~  350 (444)
T TIGR03531       305 ASP-SLDVLITLL-SLGSKGYLELLKERKEMYKYLKELLQKLAERHGE  350 (444)
T ss_pred             ChH-HHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            223 222222222 3322   245666778889999999998766643

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=96.62  E-value=0.0044  Score=47.97  Aligned_cols=19  Identities=16%  Similarity=-0.057  Sum_probs=16.7

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||+...|
T Consensus       203 ~~a~~~~~~ii~De~Y~~~  221 (404)
T PTZ00376        203 DVMKRKNLIPFFDMAYQGF  221 (404)
T ss_pred             HHHHhCCcEEEEehhhcCc
Confidence            4799999999999998765

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=96.58  E-value=0.0081  Score=47.46  Aligned_cols=105  Identities=22%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             ChhhhhCCEEEEcccccc---c-------cCCCcch---hhhhcCCCCCCCEEEEc--hhhc--cCcccccc--cccccc
Q psy4800           1 MYEKYHGSALLIDEVQTG---G-------GPCGKFW---CHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP--EFVPQQ   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG---~-------Gr~G~~~---~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~--~~~~~~   61 (119)
                      ++|++||+++|.|+++.-   +       |..+...   +.+.+..   -|..+|+  |..+  .||+++..  .+....
T Consensus       180 eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~---sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~  256 (431)
T cd00617         180 ELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSY---ADGCTMSAKKDGLVNIGGFLALRDDELYEEA  256 (431)
T ss_pred             HHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhcc---CCEEEEEeecCCCCccceEEEeCcHHHHHHH
Confidence            489999999999999741   1       1222211   1111222   5777555  5433  47777653  243221


Q ss_pred             c-----cceeeccCC-CHHHHHHHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHhh
Q psy4800          62 A-----YRVFNTWMG-DPGKVLLLKGIIDTIHNEN-LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~-----~~~~~T~~~-~p~~~a~a~a~l~~i~~~~-~~~~~~~~g~~l~~~L~~l  109 (119)
                      .     ..-+.|++| ++..+++...+|+-..+++ +.+++++. ++|.+.|++.
T Consensus       257 ~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r-~~l~~~L~~~  310 (431)
T cd00617         257 RQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQV-RYLGDRLDEA  310 (431)
T ss_pred             HHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHHHHHHC
Confidence            1     112234444 4444443332554422223 33444444 7788888765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=96.48  E-value=0.0094  Score=45.39  Aligned_cols=99  Identities=16%  Similarity=0.236  Sum_probs=53.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc---cCccc-cccc----ccccc---------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ---LGGYF-LKPE----FVPQQ---------   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg---~gG~~-~~~~----~~~~~---------   61 (119)
                      ++|++||+++++|=+|. +|..-  .-.+.+  .  +|+++  .-| |+   +-|+. +++.    +.+..         
T Consensus       163 ~~~~~~~~~~~vD~~~~-~g~~~--id~~~~--~--~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~  234 (371)
T PF00266_consen  163 KLAHEYGALLVVDAAQS-AGCVP--IDLDEL--G--ADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFP  234 (371)
T ss_dssp             HHHHHTTSEEEEE-TTT-TTTSS----TTTT--T--ESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHH
T ss_pred             hhhhccCCceeEechhc-ccccc--cccccc--c--cceeeecccc-cCCCCchhhheehhhhhhccccccccccccccc
Confidence            37899999999999975 54332  122222  2  78884  458 73   11222 2221    11000         


Q ss_pred             ---------cc--ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          62 ---------AY--RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ---------~~--~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                               ..  +...|  .|.....+..++++.+++.   +..++..++.+++++.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~GT--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~  294 (371)
T PF00266_consen  235 SLQEYGLADDARRFEGGT--PNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEEL  294 (371)
T ss_dssp             HHHHHCHHSTTTGSSSSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhcccccccccccccc--eeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcC
Confidence                     00  01112  3555667777888888543   45567778888888888775

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK07049 methionine gamma-lyase; Validated

Probab=96.47  E-value=0.0034  Score=49.33  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=50.4

Q ss_pred             hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccc-ccceeeccCCCHHHH
Q psy4800           6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQ-AYRVFNTWMGDPGKV   76 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~-~~~~~~T~~~~p~~~   76 (119)
                      +++++|+||+..+.-.      ......  ..||+  +++|.+++     +|+++.+ .+.+.. ..........+|..+
T Consensus       209 ~~~~vvvDety~~~~~------~~pl~~--g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a  280 (427)
T PRK07049        209 HRPIIACDNTLLGPVF------QKPLEH--GADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSC  280 (427)
T ss_pred             CCCEEEEECCcccccc------CCcccc--CCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHH
Confidence            7999999998543211      111111  26776  89999962     3454432 222211 111111225778888


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          77 LLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        77 a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..++..|+.+.  ...++..++.+.+.+.|++
T Consensus       281 ~l~~r~L~tl~--~R~~~~~~~a~~la~~L~~  310 (427)
T PRK07049        281 WMLGRSLETLV--LRMERANRNARAVAEFLRD  310 (427)
T ss_pred             HHHHcCCChHH--HHHHHHHHHHHHHHHHHHh
Confidence            87777776543  2344556666666666654

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=96.41  E-value=0.013  Score=44.76  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=58.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccccc---------ccccc----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKPE---------FVPQQ----   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~~---------~~~~~----   61 (119)
                      ++|++||+++|-|=+|+ +|-.   +--...|-.  -|+.+||    |.+.  .||+++...         +.+..    
T Consensus       134 ~~~~~~~i~lIeD~a~a-~g~~---~~g~~~G~~--gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~  207 (363)
T PF01041_consen  134 AIARKHGIPLIEDAAQA-FGAR---YKGRPVGSF--GDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRD  207 (363)
T ss_dssp             HHHHHTT-EEEEE-TTT-TT-E---ETTEETTSS--SSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETS
T ss_pred             HHHHHcCCcEEEccccc-cCce---eCCEeccCC--CCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCcc
Confidence            37999999999999975 4321   111222333  5888776    8774  467776321         11111    


Q ss_pred             --ccc-----eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          62 --AYR-----VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        62 --~~~-----~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                        ..+     .+..+-.+++.++.++.-|+.+.+  ..++-+++.+++++.|....
T Consensus       208 ~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~--~~~~R~~~a~~y~~~L~~~~  261 (363)
T PF01041_consen  208 AFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDE--IIARRRENAQRYREALAGIP  261 (363)
T ss_dssp             ECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHTTGT
T ss_pred             ccccccccccCCcccccHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCC
Confidence              111     234567899999999998888854  44555677777888887653

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=96.37  E-value=0.011  Score=45.53  Aligned_cols=102  Identities=13%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC-E--EEEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD-I--VTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD-i--~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      +++.. +++|+||++..|...+....  ...  ..+. +  -+|+|.+| .|   ||++.+ .+...... ....+..+.
T Consensus       200 l~~~~-~~vi~DeaY~~~~~~~~~~~--~~~--~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~-~~~~~~~~~  273 (380)
T PLN03026        200 ILELP-ILVVLDEAYIEFSTQESRMK--WVK--KYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWR-AKQPYNVSV  273 (380)
T ss_pred             HHhcC-CEEEEECcchhhcCCcchHH--HHH--hCCCEEEEecchHhhcCccccceeeecCHHHHHHHHH-hcCCCCCCH
Confidence            44443 89999999876522222111  111  1123 3  28999997 55   676653 23221000 001234566


Q ss_pred             HHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++..++.++|+--+ -++..+++++.-+++.+.|+++
T Consensus       274 ~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~  310 (380)
T PLN03026        274 AAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEV  310 (380)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66666777663211 0123445556666677777654

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=96.35  E-value=0.0099  Score=46.14  Aligned_cols=98  Identities=15%  Similarity=0.179  Sum_probs=54.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--cccccccc-cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--PEFVPQQA-YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~~~~~~~~-~~~~~T~~   70 (119)
                      ++|+++|+++|+||++... .....     ...-  +|++  ++.|.+++     +|+++.  +.+..... .....+..
T Consensus       161 ~ia~~~g~~vivDeay~~~-~~~~p-----l~~g--aDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~  232 (386)
T PRK08045        161 HLAREAGAVSVVDNTFLSP-ALQNP-----LALG--ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT  232 (386)
T ss_pred             HHHHHcCCEEEEECCCCcc-ccCCc-----hhhC--CCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence            4789999999999997421 11111     1222  6776  78998841     344332  22222111 11122335


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|+.+-.++..|+.+.  -..++..++...+.+.|++
T Consensus       233 ~~p~~~~l~~rgl~tl~--~R~~~~~~na~~la~~L~~  268 (386)
T PRK08045        233 GGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQT  268 (386)
T ss_pred             CCHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHHc
Confidence            78888877777776553  2345566666666666654

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=96.34  E-value=0.028  Score=43.85  Aligned_cols=100  Identities=21%  Similarity=0.206  Sum_probs=58.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEch-hhc----cCcccccccccc--------ccccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK-KMQ----LGGYFLKPEFVP--------QQAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK-~lg----~gG~~~~~~~~~--------~~~~~~~~   67 (119)
                      ++|+++++++.+|=||. +|+.--  -.+..+    .|+++||= .++    .|+.++++.+.-        ..+..-..
T Consensus       165 ~i~k~~~i~fHvDAvQa-~Gkipi--~~~~~~----vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsG  237 (386)
T COG1104         165 EICKERGILFHVDAVQA-VGKIPI--DLEELG----VDLLSFSAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERGLRSG  237 (386)
T ss_pred             HHHHHcCCeEEEehhhh-cCceec--cccccC----cceEEeehhhccCCCceEEEEECCCCccCceeccCcCCCCCCCC
Confidence            48999999999999986 766531  122222    79998762 121    344554332211        11111112


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~l  109 (119)
                      |  -|..+.++..+++++..++  ....++.++-++|.+.|++.
T Consensus       238 T--env~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~  279 (386)
T COG1104         238 T--ENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEI  279 (386)
T ss_pred             C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3  4566666666777765442  45566777777788877765

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=96.34  E-value=0.011  Score=47.43  Aligned_cols=19  Identities=16%  Similarity=0.296  Sum_probs=16.5

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||++..+
T Consensus       226 ~~a~~~~i~lI~DEiY~~~  244 (496)
T PLN02376        226 RFVTRKNIHLVVDEIYAAT  244 (496)
T ss_pred             HHHHHcCCEEEEEcCcccc
Confidence            3789999999999998764

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=96.31  E-value=0.028  Score=44.84  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc----cC----cccc-cccccccc--------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ----LG----GYFL-KPEFVPQQ--------   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg----~g----G~~~-~~~~~~~~--------   61 (119)
                      ++|+++|+++++|++|. .+-+|.. ....+|    .|++++  -|.++    .|    |+.. ++.+....        
T Consensus       232 ~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~G----aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~  305 (481)
T PRK04366        232 EIVHEAGGLLYYDGANL-NAILGKA-RPGDMG----FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKD  305 (481)
T ss_pred             HHHHHcCCEEEEEecCh-hhhcccC-CccccC----CCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeecc
Confidence            47899999999999984 2222221 111233    688743  48874    12    2322 22111100        


Q ss_pred             ---------ccce---eeccCCCHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHHHHhh
Q psy4800          62 ---------AYRV---FNTWMGDPGKVLLLKGIIDTIHNENLL---DRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ---------~~~~---~~T~~~~p~~~a~a~a~l~~i~~~~~~---~~~~~~g~~l~~~L~~l  109 (119)
                               +..+   +..+.++.+.+.++...+..+-.+++.   ++..++.++|+++|+++
T Consensus       306 g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        306 GDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             CCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence                     0000   112234444444444444444444333   44677799999999876

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=96.27  E-value=0.012  Score=45.40  Aligned_cols=20  Identities=25%  Similarity=0.184  Sum_probs=17.3

Q ss_pred             ChhhhhCCEEEEcccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG   20 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G   20 (119)
                      ++|++||+++|.||+...+.
T Consensus       199 ~~a~~~~~~ii~De~Y~~l~  218 (396)
T PRK09257        199 ELLKERGLIPFLDIAYQGFG  218 (396)
T ss_pred             HHHHhCCcEEEEeccccccc
Confidence            47999999999999987763

>PRK07671 cystathionine beta-lyase; Provisional

Probab=96.27  E-value=0.0064  Score=47.00  Aligned_cols=98  Identities=14%  Similarity=0.093  Sum_probs=53.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccc-cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQA-YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~-~~~~~T~~   70 (119)
                      ++|+++|+++|+||++.. +..+..     ....  .|++  +++|.+++     +|++.. + .+.+... ......-.
T Consensus       158 ~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g--~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~  229 (377)
T PRK07671        158 TIAKEKGLLTIVDNTFMT-PYWQSP-----ISLG--ADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGI  229 (377)
T ss_pred             HHHHHcCCEEEEECCCCc-cccCCh-----hhhC--CeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCC
Confidence            479999999999999742 111222     1222  6776  78899951     354432 2 2322111 11111124


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+..++..++.+..  ..++.+++.+.+.+.|++
T Consensus       230 ~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~L~~  265 (377)
T PRK07671        230 LGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEFLNN  265 (377)
T ss_pred             CCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHHHHc
Confidence            567777766665555432  345556666666666654

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=96.25  E-value=0.0082  Score=45.37  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=40.1

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      ++ ++++++|+||++..|.. ....  ......  +.++   +|||.++ .|   |+++.+ .+.+.... ..++++.+.
T Consensus       165 i~-~~~~~ii~De~y~~~~~-~~~~--~~~~~~--~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~-~~~~~~~~~  237 (337)
T PRK03967        165 VL-ETGKPVVLDEAYAEFSG-KSLI--GLIDEY--PNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYR-IKPPFSLNI  237 (337)
T ss_pred             HH-hcCCEEEEECchhhhcc-cchH--HHHhhC--CCEEEEecchHhhcchhhhheeeecCHHHHHHHHh-hcCCCCCCH
Confidence            45 47999999999876621 1111  111111  3443   8999996 33   665543 23221100 012234566


Q ss_pred             HHHHHHHHHHH
Q psy4800          74 GKVLLLKGIID   84 (119)
Q Consensus        74 ~~~a~a~a~l~   84 (119)
                      ++..++.++|+
T Consensus       238 ~~q~~~~~~l~  248 (337)
T PRK03967        238 LTMKIVRLALD  248 (337)
T ss_pred             HHHHHHHHHHh
Confidence            77676666664

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=96.25  E-value=0.011  Score=45.72  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=16.5

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|+||++.-|
T Consensus       200 ~~a~~~~~~iI~De~y~~~  218 (402)
T TIGR03542       200 DYANEHGSLILFDAAYSAF  218 (402)
T ss_pred             HHHHHcCeEEEEEchhhhh
Confidence            4789999999999998765

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=96.23  E-value=0.016  Score=44.35  Aligned_cols=99  Identities=12%  Similarity=0.051  Sum_probs=46.3

Q ss_pred             hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHH
Q psy4800           6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVL   77 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a   77 (119)
                      +++++|+||+..-|.. ... .....+..  +.++   +|||.+| .|   ||++.. .+..... .....+..+.++..
T Consensus       183 ~~~~iI~Deay~~f~~-~~~-~~~~~~~~--~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~-~~~~~~~~~~~~~~  257 (364)
T PRK04781        183 GKALVVVDEAYGEFSD-VPS-AVGLLARY--DNLAVLRTLSKAHALAAARIGSLIANAELIAVLR-RCQAPYPVPTPCAA  257 (364)
T ss_pred             CCcEEEEeCcchhhcC-Ccc-hHHHHhhC--CCEEEEecChhhcccccceeeeeeCCHHHHHHHH-hccCCCCCCHHHHH
Confidence            4789999999876631 111 11111211  3443   9999986 34   666543 2322110 01123445566555


Q ss_pred             HHHHHHHHH--hh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          78 LLKGIIDTI--HN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        78 ~a~a~l~~i--~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.+.|+-=  .. .+..+++++.-+++.+.|+++
T Consensus       258 ~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  292 (364)
T PRK04781        258 LAEQALSAPALAVTARRVAEVRAERERLHAALAQL  292 (364)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            555554321  00 112223344445555555543

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=96.19  E-value=0.01  Score=46.47  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=26.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|++||+++|+||++. .+.     ........  +|++  +++|.++
T Consensus       166 ~la~~~~i~livD~t~~-~~~-----~~~~l~~g--~Divv~S~sK~l~  206 (418)
T TIGR01326       166 EVAHAHGVPLIVDNTFA-TPY-----LCRPIDHG--ADIVVHSATKYIG  206 (418)
T ss_pred             HHHHHcCCEEEEECCCc-hhh-----cCCchhcC--CeEEEECcccccc
Confidence            47999999999999974 221     11222223  7887  8999996

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PLN02397 aspartate transaminase

Probab=96.18  E-value=0.012  Score=46.01  Aligned_cols=19  Identities=16%  Similarity=0.013  Sum_probs=17.0

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||+...|
T Consensus       221 ~~a~~~~~~vI~De~Y~~l  239 (423)
T PLN02397        221 DLIKSKNHLPFFDSAYQGF  239 (423)
T ss_pred             HHHHhCCcEEEEecccCCc
Confidence            4789999999999999877

>PRK05839 hypothetical protein; Provisional

Probab=96.17  E-value=0.017  Score=44.25  Aligned_cols=19  Identities=21%  Similarity=0.067  Sum_probs=16.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||+..-+
T Consensus       182 ~~~~~~~~~ii~DE~Y~~~  200 (374)
T PRK05839        182 KLALKHDFILINDECYSEI  200 (374)
T ss_pred             HHHHHcCCEEEeccchhhc
Confidence            4689999999999997655

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=96.11  E-value=0.013  Score=44.46  Aligned_cols=98  Identities=15%  Similarity=0.130  Sum_probs=45.5

Q ss_pred             CCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCHHHHHH
Q psy4800           7 GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGKVLL   78 (119)
Q Consensus         7 ~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~~a~   78 (119)
                      ++++|+||++.-|.. .... ......  .+.++   +|+|.+| .|   |+...+ .+.+.... ....+..+.....+
T Consensus       178 ~~~vivDeay~~~~~-~~s~-~~~~~~--~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~-~~~~~~~~~~~~~~  252 (354)
T PRK04635        178 DAIVVVDEAYIEFCP-EYSV-ADLLAS--YPNLVVLRTLSKAFALAGARCGFTLANEELIEILMR-VIAPYPVPLPVSEI  252 (354)
T ss_pred             CcEEEEeCchHhhcc-Ccch-HHHHhh--CCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHh-hcCCCCCCHHHHHH
Confidence            599999999865531 1111 111111  13333   8999986 44   665543 23321110 11223445555555


Q ss_pred             HHHHHHHH--hh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          79 LKGIIDTI--HN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        79 a~a~l~~i--~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+.|+.-  +. .+..+++++.-+++.+.|+++
T Consensus       253 a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  286 (354)
T PRK04635        253 ATQALSEAGLARMKFQVLDLNAQGARLQAALSMY  286 (354)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55555321  10 112233444445566666553

>PTZ00377 alanine aminotransferase; Provisional

Probab=96.10  E-value=0.011  Score=46.94  Aligned_cols=19  Identities=26%  Similarity=0.300  Sum_probs=16.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||+..-+
T Consensus       245 ~~a~~~~~~iI~De~Y~~l  263 (481)
T PTZ00377        245 KFCYEKGIVLMADEVYQEN  263 (481)
T ss_pred             HHHHHCCCEEEEehhhHhh
Confidence            4799999999999998653

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=96.08  E-value=0.0087  Score=46.59  Aligned_cols=97  Identities=16%  Similarity=0.145  Sum_probs=53.0

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccccc-cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQA-YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~~-~~~~~T~   69 (119)
                      ++|+++|+++|+||++. ++..       ....+.  .|++  .+.|.+++     ||++.. + .+..... .......
T Consensus       162 ~la~~~gi~vIvDea~~~~~~~-------~pl~~G--aDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~  232 (388)
T PRK08861        162 QKAKAVGALVAVDNTFLTPVLQ-------KPLELG--ADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGA  232 (388)
T ss_pred             HHHHHcCCEEEEECCccccccC-------CCcccC--CCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCC
Confidence            47899999999999974 3211       111222  6877  67898852     455543 2 2221111 1111122


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|..+...+..|+-+.  -..++..+++..+.+.|++
T Consensus       233 ~~~p~~a~l~~rgl~Tl~--lR~~~~~~~a~~~a~~L~~  269 (388)
T PRK08861        233 TGTPFDSYMTLRGIRTLG--ARMRVHEESAQQILAYLQT  269 (388)
T ss_pred             CCChHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHh
Confidence            467887776655555443  2335556666666666653

>PRK09265 aminotransferase AlaT; Validated

Probab=96.07  E-value=0.011  Score=45.59  Aligned_cols=19  Identities=16%  Similarity=0.176  Sum_probs=16.5

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|+||++..+
T Consensus       195 ~~a~~~~~~ii~De~y~~~  213 (404)
T PRK09265        195 EIARQHNLIIFADEIYDKI  213 (404)
T ss_pred             HHHHHCCCEEEEehhhhhc
Confidence            4689999999999998765

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=95.96  E-value=0.014  Score=46.16  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=56.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-----cCccccc-cc----------ccc---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-----LGGYFLK-PE----------FVP---   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-----~gG~~~~-~~----------~~~---   59 (119)
                      ++|++||+++|+|++.      +....++.+..-  +||+  .++|-++     .||.++. ..          +..   
T Consensus       171 ~iA~~~gi~livD~T~------~tP~~~~pl~~G--ADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~  242 (432)
T PRK06702        171 DAAKELEVPFIVDNTL------ATPYLCQAFEHG--ANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDP  242 (432)
T ss_pred             HHHHHcCCEEEEECCC------CchhhCChhhcC--CCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccc
Confidence            4799999999999984      123333423222  7876  7889664     2344431 11          110   


Q ss_pred             ---------c---------cc--cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          60 ---------Q---------QA--YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        60 ---------~---------~~--~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                               .         ..  .........+|..+..++..|+.+.  -+.++.+++...+.+.|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~--lR~~r~~~Na~~la~~L~~  309 (432)
T PRK06702        243 SYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLH--LRMERHSENALAVAKWLAD  309 (432)
T ss_pred             cccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence                     0         00  0011223678888888777776553  3445566777777777765

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=95.95  E-value=0.018  Score=44.73  Aligned_cols=19  Identities=21%  Similarity=0.093  Sum_probs=16.7

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||++..+
T Consensus       197 ~~a~~~~~~ii~De~Y~~l  215 (409)
T PLN00143        197 ETARKLGILVIADEVYGHI  215 (409)
T ss_pred             HHHHHcCCeEEEEcccccc
Confidence            4789999999999998765

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=95.89  E-value=0.0065  Score=47.03  Aligned_cols=39  Identities=23%  Similarity=0.155  Sum_probs=25.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg   47 (119)
                      ++|++||+++|+|++++.. -.+..     .+..  .|+++  +.|.++
T Consensus       158 ~la~~~gi~vivD~t~a~~-~~~~p-----~~~g--aDivv~S~tK~l~  198 (380)
T PRK06176        158 SVAKDHGLLTIVDNTFATP-YYQNP-----LLLG--ADIVVHSGTKYLG  198 (380)
T ss_pred             HHHHHcCCEEEEECCcccc-ccCCc-----cccC--CCEEEecCceecc
Confidence            4799999999999997521 11111     2223  78875  559885

>PRK07050 cystathionine beta-lyase; Provisional

Probab=95.88  E-value=0.0084  Score=46.64  Aligned_cols=98  Identities=13%  Similarity=0.004  Sum_probs=48.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccc-cc-ccccccc-cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFL-KP-EFVPQQA-YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~-~~-~~~~~~~-~~~~~T~~   70 (119)
                      ++|++||+++|+||++. .|-.-..   ...|    .|++  .+.|.+++     ||.++ .+ .+..... ........
T Consensus       174 ~ia~~~gi~livD~a~a-~~~~~~~---l~~G----aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~  245 (394)
T PRK07050        174 AAARARGVVTAIDNTYS-AGLAFKP---FEHG----VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIG  245 (394)
T ss_pred             HHHHHcCCEEEEECCcc-cccccCH---HHcC----CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            47899999999999974 2111111   1123    5766  68898842     33333 22 2322111 11111224


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+..++..|+-+.  ...++..++...+.+.|++
T Consensus       246 ~~~~~a~l~lr~l~tl~--~Rl~~~~~~a~~la~~L~~  281 (394)
T PRK07050        246 VSADDCSLVLRGLPSLQ--VRLAAHDRSALEVAEWLKA  281 (394)
T ss_pred             CCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            56666544443333222  2344555555555555543

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=95.86  E-value=0.021  Score=45.39  Aligned_cols=19  Identities=21%  Similarity=0.307  Sum_probs=16.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||+...+
T Consensus       218 ~~a~~~~~~iI~DE~Y~~~  236 (468)
T PLN02450        218 DFITAKNIHLISDEIYSGT  236 (468)
T ss_pred             HHHHHCCcEEEEEcccccc
Confidence            3689999999999998754

>PLN02271 serine hydroxymethyltransferase

Probab=95.85  E-value=0.043  Score=44.95  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccc-cccccc---------------
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFL-KPEFVP---------------   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~-~~~~~~---------------   59 (119)
                      ++|+++|++|++|-+|. |+  .... .++  ......|++  |.-|+|.  -||++. .+....               
T Consensus       320 eIAdevGA~LmvD~AH~aGL--Ia~g-~~~--sP~~~aDvvt~TTHKtLrGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~  394 (586)
T PLN02271        320 QIADKCGAVLMCDMAHISGL--VAAK-ECV--NPFDYCDIVTSTTHKSLRGPRGGIIFYRKGPKLRKQGMLLSHGDDNSH  394 (586)
T ss_pred             HHHHHcCCEEEEECcccccc--cccC-cCC--CCCcCCcEEEeCCcccCCCCCceEEEecccccccccCCcccccccccc
Confidence            48999999999999986 44  3211 111  111137988  4569994  355554 322100               


Q ss_pred             --c---cccceeeccCCCHH--HHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800          60 --Q---QAYRVFNTWMGDPG--KVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 --~---~~~~~~~T~~~~p~--~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l  109 (119)
                        .   -....+-.+.+.|.  ..|+-..+++.+..++   ..+++-+|.+.|.+.|.+.
T Consensus       395 ~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~  454 (586)
T PLN02271        395 YDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR  454 (586)
T ss_pred             HHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC
Confidence              0   00001112222222  2333344556555444   5567888888888888764

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=95.81  E-value=0.021  Score=45.15  Aligned_cols=39  Identities=18%  Similarity=0.146  Sum_probs=26.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|++||+++|+|++|. .+......   .+|    +|++  ++.|.+|
T Consensus       179 ~la~~~gi~liVD~t~a-~~~~~~pl---~~G----aDivv~S~tK~lg  219 (436)
T PRK07812        179 EVAHEAGVPLIVDNTIA-TPYLIRPL---EHG----ADIVVHSATKYLG  219 (436)
T ss_pred             HHHHHcCCEEEEECCCc-ccccCCch---hcC----CCEEEEecccccC
Confidence            47999999999999974 11111111   123    6776  7899996

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.074  Score=41.75  Aligned_cols=102  Identities=18%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc----cCccccccccccc--------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ----LGGYFLKPEFVPQ--------------   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~~~~--------------   60 (119)
                      ++|++||+++++|=+|. .|- . ..-.+..|    .|+++||  |+|.    .|.++.++.+.+.              
T Consensus       186 ~la~~~ga~v~VDaaq~-~~h-~-~idv~~l~----~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~  258 (405)
T COG0520         186 ELAHEHGALVLVDAAQA-AGH-L-PIDVQELG----CDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYV  258 (405)
T ss_pred             HHHHHcCCEEEEECccc-cCc-c-CCCchhcC----CCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeee
Confidence            48999999999999985 211 1 11122233    7888666  7552    2233333221110              


Q ss_pred             ---------cccceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          61 ---------QAYRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ---------~~~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                               ..+.-+-.-..|........++++++++.   +..++.+++.+++.++|+++
T Consensus       259 ~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~  319 (405)
T COG0520         259 SRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSEL  319 (405)
T ss_pred             cccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence                     00000101013444445556788888764   35556666666777766654

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=95.76  E-value=0.085  Score=41.69  Aligned_cols=105  Identities=18%  Similarity=0.103  Sum_probs=55.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC-------EEEEc--hhhc--c-Ccccc-c-cccccc-----c
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD-------IVTFS--KKMQ--L-GGYFL-K-PEFVPQ-----Q   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD-------i~t~g--K~lg--~-gG~~~-~-~~~~~~-----~   61 (119)
                      ++|.++++.|+|||+|.+.-+.-.. -......-  .|       ++|-|  |.|+  + ++++- . +...+.     .
T Consensus       191 ~~~h~~~~~llvDEAhGah~~F~~l-p~~a~~~g--ad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~  267 (417)
T PF01276_consen  191 EICHKHGIPLLVDEAHGAHFGFHPL-PRSALALG--ADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEA  267 (417)
T ss_dssp             HHHCCTECEEEEE-TT-TTGGCSGG-GTTCSSTT--SS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHH
T ss_pred             HHhcccCCEEEEEccccccccCCCC-ccchhhcc--CccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHH
Confidence            3789999999999998653222222 11122232  55       77544  7774  1 11111 1 111111     1


Q ss_pred             ccceeeccCCCHHHHHHHHHHHHHH-hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 AYRVFNTWMGDPGKVLLLKGIIDTI-HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~~~~~~T~~~~p~~~a~a~a~l~~i-~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      -..+.|| +.+=+-+|..-.+.+++ .+  +++.++.-++.+.+|++++++
T Consensus       268 l~~~~TT-SPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~  317 (417)
T PF01276_consen  268 LSMHQTT-SPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL  317 (417)
T ss_dssp             HHHHS-S-S--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            1123344 55555566666666777 33  357788888899999999653

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=95.75  E-value=0.072  Score=42.55  Aligned_cols=105  Identities=18%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             ChhhhhCCEEEEcccccccc-------C----CCcc-h--hhhhcCCCCCCCEEEEc--hhhc--cCcccccc--ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG-------P----CGKF-W--CHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP--EFVPQ   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G-------r----~G~~-~--~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~--~~~~~   60 (119)
                      ++|++||+.||.|=++. +|       |    .|+. +  ..+.+.   ..|++|||  |.++  .||+++..  .+...
T Consensus       205 elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~i~ei~~e~~s---~aD~~t~S~~K~~~~~~GG~i~t~D~eL~~~  280 (460)
T PRK13237        205 ELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKSIKEIVHEMFS---YADGCTMSGKKDCLVNIGGFLAMNDEELFDE  280 (460)
T ss_pred             HHHHHcCCEEEEECcch-hcChhhhcccccccCCCcHhHHhhhccC---cCcEEEEeCCCCCCCCCceEEEECCHHHHHH
Confidence            47999999999999975 32       1    1110 0  001111   26888655  6665  47777642  23221


Q ss_pred             ----ccc-ceeeccCCCHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 ----QAY-RVFNTWMGDPG-KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ----~~~-~~~~T~~~~p~-~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                          ... .-+.||+|-.. -+.+.--.|+-..+++..++.-+..++|.+.|++.
T Consensus       281 ~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        281 AKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             HHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence                111 23457776433 22222223443444455555555668888888765

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=95.71  E-value=0.017  Score=46.31  Aligned_cols=19  Identities=16%  Similarity=0.102  Sum_probs=16.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||+..-|
T Consensus       308 ~~a~~~~~~ii~DE~Y~~~  326 (517)
T PRK13355        308 DIAREHQLIIFSDEIYDRL  326 (517)
T ss_pred             HHHHHcCcEEEEehhhhhh
Confidence            4789999999999998654

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=95.69  E-value=0.024  Score=44.31  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhh-hhcCCCCCCCEEEEc--hhhc--cCccccccc-cccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCH-EHFDLEESPDIVTFS--KKMQ--LGGYFLKPE-FVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~-~~~g~~~~pDi~t~g--K~lg--~gG~~~~~~-~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+|.+ +|. +.-+.... +....-  +|+++||  |.||  .+|+++..+ +... ....+.-..--.+
T Consensus       181 ~ia~~~~lpvivD~a-Sg~-~v~~e~~l~~~la~G--aDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~Ralrv~K  256 (395)
T COG1921         181 EIAHEKGLPVIVDLA-SGA-LVDKEPDLREALALG--ADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLKRALRVDK  256 (395)
T ss_pred             HHHHHcCCCEEEecC-Ccc-ccccccchhHHHhcC--CCEEEEecchhcCCCccceEechHHHHHHHHhhhhhhhhhcCc
Confidence            479999999999998 654 21121111 222222  8999776  7886  578887643 3321 1122222334467


Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy4800          74 GKVLLLKGIIDTIHNEN   90 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~   90 (119)
                      ...++..++|+.+.+++
T Consensus       257 ~tla~l~~aLe~y~~~~  273 (395)
T COG1921         257 ETLAALEAALELYLQPE  273 (395)
T ss_pred             HhHHHHHHHHHHHcCch
Confidence            77888889999887654

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=95.68  E-value=0.048  Score=42.78  Aligned_cols=19  Identities=21%  Similarity=0.114  Sum_probs=16.4

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||+...|
T Consensus       217 ~~a~~~~i~ii~De~Y~~~  235 (430)
T PLN00145        217 ETARKLGILVIADEVYDHL  235 (430)
T ss_pred             HHHHHcCCEEEEeccchhh
Confidence            3689999999999998754

>PRK07908 hypothetical protein; Provisional

Probab=95.65  E-value=0.037  Score=41.84  Aligned_cols=102  Identities=14%  Similarity=0.184  Sum_probs=46.3

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccccc-ccccccccceeeccCCCH
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      +|+ ++.++|+||++.-+ ..+..-......   .++++   +|+|.++ .|   ||+..+ .+....... ...+..++
T Consensus       164 l~~-~~~~iIvDe~y~~~-~~~~~~~l~~~~---~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~-~~~~~~~~  237 (349)
T PRK07908        164 LRR-PGRILVVDEAFADA-VPGEPESLAGDD---LPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRG-RAHWPVGT  237 (349)
T ss_pred             HHh-cCCEEEEECcchhh-ccCCcccccccc---CCCEEEEeecccccCCccceeeeeecCHHHHHHHHhc-CCCCCccH
Confidence            564 57889999998644 222211111111   23444   7899885 34   666543 222211000 01123345


Q ss_pred             HHHHHHHHHHH--HHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIID--TIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~--~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +..+++.+.++  ..+. ++.+++++++-+++.+.|+++
T Consensus       238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  276 (349)
T PRK07908        238 LQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV  276 (349)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            54444433332  1110 123444555555666666553

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=95.54  E-value=0.026  Score=44.48  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=25.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|++||+++|+|+++. .+-.-...   .+|    .|++  .+.|.+|
T Consensus       173 ~la~~~gi~vIvD~t~a-~~~~~~pl---~~g----aDivv~S~tK~lg  213 (431)
T PRK08248        173 AIAHEHGIPLIVDNTFA-SPYLLRPI---EHG----ADIVVHSATKFIG  213 (431)
T ss_pred             HHHHHcCCEEEEeCCCC-ccccCChh---HcC----CCEEEEcCccccC
Confidence            47999999999999964 11111111   123    7877  5779986

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=95.35  E-value=0.043  Score=41.92  Aligned_cols=99  Identities=17%  Similarity=0.107  Sum_probs=45.3

Q ss_pred             hCCEEEEccccccccCCCc--chhhhhc-CCCCCCCEE---EEchhhc-cC---ccccc--cccccccccceeeccCCCH
Q psy4800           6 HGSALLIDEVQTGGGPCGK--FWCHEHF-DLEESPDIV---TFSKKMQ-LG---GYFLK--PEFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~--~~~~~~~-g~~~~pDi~---t~gK~lg-~g---G~~~~--~~~~~~~~~~~~~T~~~~p   73 (119)
                      +++++|+||+..-|- .+.  ....... ...  +.++   +|||.++ .|   ||++.  ..+...... ....+..|.
T Consensus       190 ~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~--~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~-~~~~~~~~~  265 (371)
T PRK05166        190 PETLIVVDEAYAEYA-AGDDYPSALTLLKARG--LPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDR-VRTPFNVNG  265 (371)
T ss_pred             CCcEEEEECcHHHhc-CCcCcccHHHHHhhcC--CCEEEEeechHhhhcchhheeeeecCCHHHHHHHHH-hccCCCCCH
Confidence            488999999976442 221  1111111 111  2333   7999996 44   66432  233221110 112334566


Q ss_pred             HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ++..++.+.+..-.. ++.++..+++-+++.+.|++
T Consensus       266 ~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  301 (371)
T PRK05166        266 AAQAAALAALDDEEHLAKGVALALAERERLKKELAE  301 (371)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665556655531100 11223334444555555554

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=95.33  E-value=0.057  Score=41.35  Aligned_cols=73  Identities=19%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhccC----cccccc-ccccccccceeeccCCCHHHHH
Q psy4800           6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQLG----GYFLKP-EFVPQQAYRVFNTWMGDPGKVL   77 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg~g----G~~~~~-~~~~~~~~~~~~T~~~~p~~~a   77 (119)
                      +++++|.||+..-|.  +.. ......  ..+.++   +|||.+|..    ||++.. .+.+...... ..+..+.++-.
T Consensus       198 ~~~~iI~De~Y~~~~--~~~-~~~~~~--~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~-~~~~~~~~~q~  271 (374)
T PRK02610        198 EDILVVIDEAYFEFS--QTT-LVGELA--QHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR-LPYNLPSFSQL  271 (374)
T ss_pred             CCcEEEEeccccccC--ccc-hHHHHh--cCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhc-CCCCCCHHHHH
Confidence            489999999986552  111 111111  113333   899999633    455443 2322110000 12234566655


Q ss_pred             HHHHHHH
Q psy4800          78 LLKGIID   84 (119)
Q Consensus        78 ~a~a~l~   84 (119)
                      ++.++++
T Consensus       272 a~~~~l~  278 (374)
T PRK02610        272 AAQLALE  278 (374)
T ss_pred             HHHHHhc
Confidence            5555554

>PLN02672 methionine S-methyltransferase

Probab=95.24  E-value=0.053  Score=47.40  Aligned_cols=19  Identities=21%  Similarity=0.181  Sum_probs=16.7

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||++..+
T Consensus       856 ela~k~di~VIsDEaYsdL  874 (1082)
T PLN02672        856 SVCAKYGARVIIDTSFSGL  874 (1082)
T ss_pred             HHHHHcCCEEEEeCCCCcc
Confidence            4799999999999999764

>PRK05967 cystathionine beta-lyase; Provisional

Probab=95.14  E-value=0.014  Score=45.72  Aligned_cols=97  Identities=16%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccccc-cccccc--cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKPE-FVPQQA--YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~~-~~~~~~--~~~~~T~~   70 (119)
                      ++|++||+++|+|+++..    +...-.-.+|    +|++  ...|.+++     +|.+..+. +.....  .....+ .
T Consensus       173 ~la~~~g~~vvVD~t~a~----p~~~~pl~~G----aDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~-~  243 (395)
T PRK05967        173 EAAHRHGAIVMMDNTWAT----PLYFRPLDFG----VDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGL-C  243 (395)
T ss_pred             HHHHHhCCEEEEECCccC----ceecChhHcC----CCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCC-C
Confidence            479999999999999742    1111111134    6776  78899853     35444322 111100  111122 3


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+-..+..|+-+.  -..++..+++..+.+.|++
T Consensus       244 ~~p~da~l~~rgl~Tl~--lR~~~~~~na~~lA~~L~~  279 (395)
T PRK05967        244 AGPDDTYQILRGLRTMG--IRLEHHRKSALEIARWLEG  279 (395)
T ss_pred             CCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHHh
Confidence            56777666555555443  2334455566566555554

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=95.14  E-value=0.047  Score=41.33  Aligned_cols=101  Identities=13%  Similarity=0.149  Sum_probs=47.1

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCE---EEEchhhcc-C---cccccc-ccccccccceeeccCCCH
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDI---VTFSKKMQL-G---GYFLKP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi---~t~gK~lg~-g---G~~~~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      +++..++++|+||++..|.. .. +.. ..  ...+.+   -+|+| .+. |   |+++.. .+.+..... ...+..+.
T Consensus       178 i~~~~~~~ii~De~y~~~~~-~~-~~~-~~--~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~-~~~~~~~~  250 (356)
T PRK04870        178 IIEAAPGLVVVDEAYQPFAG-DS-WLP-RL--ARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKV-RPPYNVNV  250 (356)
T ss_pred             HHHHCCCEEEEECCchhhcC-cc-hHH-HH--hhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHc-cCCCcCCH
Confidence            34444889999999876632 11 111 11  111233   38999 542 2   455432 232211000 01234455


Q ss_pred             HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++..++...++..+. ++..++++++-+++.+.|+++
T Consensus       251 ~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  287 (356)
T PRK04870        251 LTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL  287 (356)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            665555555542111 123344555555666666543

>PRK05367 glycine dehydrogenase; Provisional

Probab=95.13  E-value=0.13  Score=44.53  Aligned_cols=102  Identities=14%  Similarity=0.086  Sum_probs=52.3

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCc-----c-ccccccccccccce---
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGG-----Y-FLKPEFVPQQAYRV---   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG-----~-~~~~~~~~~~~~~~---   65 (119)
                      ++|+++|+++++|-+|. ++...-..   ..+|    .|+++++  |.++   ++|     + .+.+.+....+...   
T Consensus       664 ~i~h~~G~~v~VDgA~~~al~~l~~p---g~~G----ADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~  736 (954)
T PRK05367        664 EIVHEHGGQVYLDGANMNAQVGLARP---GDIG----ADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQI  736 (954)
T ss_pred             HHHHHcCCEEEEECcChhhccCCCCh---hhcC----CCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCc
Confidence            46899999999999985 22111111   1123    7998776  9875   233     2 22333322111110   


Q ss_pred             ------eeccCCCHH-HHHHHHHHHHHHh---hhcHHHHHH---HHHHHHHHHHHhh
Q psy4800          66 ------FNTWMGDPG-KVLLLKGIIDTIH---NENLLDRVQ---KTGDILLNVRLGL  109 (119)
Q Consensus        66 ------~~T~~~~p~-~~a~a~a~l~~i~---~~~~~~~~~---~~g~~l~~~L~~l  109 (119)
                            .++....+. +...+..+.-++.   .+.+.+..+   .+.+|+.++|++.
T Consensus       737 ~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~  793 (954)
T PRK05367        737 AGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH  793 (954)
T ss_pred             CCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  011111222 2223333444443   345655555   7889999999764

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=95.05  E-value=0.069  Score=41.34  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=14.9

Q ss_pred             ChhhhhCCEEEEccccc
Q psy4800           1 MYEKYHGSALLIDEVQT   17 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t   17 (119)
                      ++|++|++++|.||++.
T Consensus       206 ~~a~~~~~~iI~De~Y~  222 (416)
T PRK09440        206 ALARQHNIPLLIDNAYG  222 (416)
T ss_pred             HHHHHcCCcEEEeCCcc
Confidence            47899999999999963

>KOG0257|consensus

Probab=94.93  E-value=0.041  Score=43.17  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCc---chhhh--hcCCCCCCCEEEEchhhc-cC---ccccccc-cccccccce-eecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK---FWCHE--HFDLEESPDIVTFSKKMQ-LG---GYFLKPE-FVPQQAYRV-FNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~---~~~~~--~~g~~~~pDi~t~gK~lg-~g---G~~~~~~-~~~~~~~~~-~~T~   69 (119)
                      +||++||+++|.|||.--+=-.|.   .+++.  .+...  .-+-.+||.++ +|   |..+..+ +......-| ...|
T Consensus       199 ~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ert--itvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~  276 (420)
T KOG0257|consen  199 ELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERT--ITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVF  276 (420)
T ss_pred             HHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheE--EEeccccceeeeeeeeeeeeechHHhhhhHHHHhhcccc
Confidence            589999999999999753312221   12211  01111  23337899987 55   5555543 221111111 1111


Q ss_pred             -CCCHHHHHHHHH-HHHH-Hhhh-------cHHHHHHHHHHHHHHHHHhh
Q psy4800          70 -MGDPGKVLLLKG-IIDT-IHNE-------NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 -~~~p~~~a~a~a-~l~~-i~~~-------~~~~~~~~~g~~l~~~L~~l  109 (119)
                       ...|+..|.+.+ .++. +.++       ++....+++=+.|.+.|.++
T Consensus       277 ~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  277 TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence             123443332211 1111 1211       24455677777888888887

>PRK09028 cystathionine beta-lyase; Provisional

Probab=94.74  E-value=0.03  Score=43.74  Aligned_cols=97  Identities=15%  Similarity=0.078  Sum_probs=52.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc--cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA--YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~--~~~~~T~~   70 (119)
                      ++|++||+++|+||++..    +.  .+....+-  +|++  ...|.+++     +|.+..+ .+.....  .....+ .
T Consensus       170 ~la~~~g~~lvvD~t~a~----p~--~~~Pl~~G--aDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~-~  240 (394)
T PRK09028        170 RIAHEHDIVVMLDNTWAS----PI--NSRPFEMG--VDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQ-C  240 (394)
T ss_pred             HHHHHcCCEEEEECCccc----cc--cCCccccC--ceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCC-C
Confidence            478999999999999852    21  11112222  7877  68899842     3443322 2211100  001112 3


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+-..+..|+-+.  -..++..++...+.+.|++
T Consensus       241 ~~p~~a~l~~rgl~TL~--lR~~~~~~na~~la~~L~~  276 (394)
T PRK09028        241 TSPDDVYLAMRGLRTLG--VRLAQHEKNALKVANWLAT  276 (394)
T ss_pred             CCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHhc
Confidence            57777766655555442  2345556666666666654

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=94.53  E-value=0.19  Score=38.61  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc-cCcccc---cccccc----cc------ccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ-LGGYFL---KPEFVP----QQ------AYR   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg-~gG~~~---~~~~~~----~~------~~~   64 (119)
                      +++++||+++|+|=+|+ +|-  ..     ..++ ..|+++++  |++| .+|+..   +..+..    ..      +.+
T Consensus       149 ~I~~~~g~~~iVDavqs-~g~--~~-----idv~-~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~  219 (361)
T TIGR01366       149 RPEGSDDALVVIDATSG-AGG--LP-----VDIA-ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEF  219 (361)
T ss_pred             cccccCCCeEEEEcCcc-ccC--CC-----CCHH-HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchh
Confidence            35788999999999976 321  11     2222 16887554  8886 345443   322110    00      001


Q ss_pred             -----------eeeccCCCHH-HHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhhh
Q psy4800          65 -----------VFNTWMGDPG-KVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        65 -----------~~~T~~~~p~-~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l~  110 (119)
                                 -..|...+|+ .+.+..+++++++++ .   ..++.+++.+++++.|+++.
T Consensus       220 ~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~  281 (361)
T TIGR01366       220 LSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERP  281 (361)
T ss_pred             hhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence                       0133344444 444678889988764 2   34667788888888887764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=94.48  E-value=0.048  Score=42.84  Aligned_cols=104  Identities=20%  Similarity=0.258  Sum_probs=54.0

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc---------------ccccc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP---------------EFVPQ   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~---------------~~~~~   60 (119)
                      ++|++.|++|++|=+|. |+=-.| .+ ...+.   ..|++  +.-|.|.  -||++...               .+.+.
T Consensus       191 eIad~vga~l~~D~sH~~GLIa~g-~~-~~P~~---~ADvvt~sThKtl~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~  265 (399)
T PF00464_consen  191 EIADEVGAYLMADISHIAGLIAGG-LF-PNPFP---YADVVTGSTHKTLRGPRGGIILTNKGSKNVDKKGKEIDEELAEK  265 (399)
T ss_dssp             HHHHHTT-EEEEE-TTTHHHHHTT-SS---GCC---TSSEEEEESSGGG-SSS-EEEEES-SEEEE-TTS-EEEHHHHHH
T ss_pred             HHHHhcCcEEEecccccccceehh-ee-cCccc---cceEEEeeccccccccCceEEEEcCCccccCCcccccHHHHHHH
Confidence            47999999999999996 551112 11 11122   37998  5679996  47877644               12111


Q ss_pred             cccceeeccCCCHH--HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          61 QAYRVFNTWMGDPG--KVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ~~~~~~~T~~~~p~--~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      -....+..+.++|.  ..++-..++....++   +..+++-++.+.|.+.|++.
T Consensus       266 I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~  319 (399)
T PF00464_consen  266 IDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER  319 (399)
T ss_dssp             HHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            11112222233333  222222334443333   45677889999999998875

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02231 alanine transaminase

Probab=94.47  E-value=0.064  Score=43.50  Aligned_cols=19  Identities=37%  Similarity=0.412  Sum_probs=16.6

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||++.-+
T Consensus       298 ~~a~~~~l~lI~DEvY~~l  316 (534)
T PLN02231        298 EFCKQEGLVLLADEVYQEN  316 (534)
T ss_pred             HHHHHcCCEEEEEccchhc
Confidence            4799999999999998654

>PRK08064 cystathionine beta-lyase; Provisional

Probab=94.35  E-value=0.054  Score=42.03  Aligned_cols=98  Identities=14%  Similarity=0.050  Sum_probs=48.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccc-cc-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFL-KP-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~-~~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|+++|+++|+||++..+ -.....   .+|    .|++  ++.|.+++     +|+.. .+ .+.+. .+........
T Consensus       162 ~la~~~g~~vvvD~a~~~~-~~~~~~---~~g----~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~  233 (390)
T PRK08064        162 KLAKAIGCLTFVDNTFLTP-LLQKPL---DLG----ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAV  233 (390)
T ss_pred             HHHHHcCCEEEEECCCCcc-cccCch---hhC----CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            4799999999999997421 111111   123    6777  67799841     35433 22 23221 1111111224


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+...+..++.+  +...++..++...+.+.|++
T Consensus       234 ~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L~~  269 (390)
T PRK08064        234 LGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYLQE  269 (390)
T ss_pred             CCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHhc
Confidence            5566655544333322  12334445555555555554

>PRK05939 hypothetical protein; Provisional

Probab=94.25  E-value=0.11  Score=40.54  Aligned_cols=39  Identities=18%  Similarity=0.234  Sum_probs=25.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|++||+++|+|++|..    +..  ++.....  .|++  .++|.++
T Consensus       155 ~la~~~gi~livD~t~a~----~~~--~~~~~~g--aDivv~S~sK~~~  195 (397)
T PRK05939        155 ALCRERGLLYVVDNTMTS----PWL--FRPKDVG--ASLVINSLSKYIA  195 (397)
T ss_pred             HHHHHcCCEEEEECCccc----ccc--cCccccC--CEEEEecCeeccc
Confidence            479999999999999742    111  1111222  6766  7899996

>PRK06434 cystathionine gamma-lyase; Validated

Probab=93.99  E-value=0.08  Score=41.24  Aligned_cols=96  Identities=17%  Similarity=0.082  Sum_probs=51.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc-----Cccccc-c-ccccccccce-eeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL-----GGYFLK-P-EFVPQQAYRV-FNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~-----gG~~~~-~-~~~~~~~~~~-~~T~~   70 (119)
                      ++|++++  +++|-++. -+-.+     +..+.-  .|++++|  |-+++     ||+++. + .+........ ..-..
T Consensus       172 ~la~~~~--lvVD~t~~-s~~~~-----~pl~~g--aDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~  241 (384)
T PRK06434        172 SFCHEND--VIVDATFA-SPYNQ-----NPLDLG--ADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSN  241 (384)
T ss_pred             HHHHHcC--eEEECCCC-CcccC-----CchhcC--CCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCC
Confidence            4789998  46798862 11122     222333  7888655  76742     565543 2 2221111110 11124


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..++..+..|+.+.  .+.++-+++...+.+.|+.
T Consensus       242 ~~~~~A~l~~~gL~tL~--~R~~r~~~~a~~~a~~L~~  277 (384)
T PRK06434        242 PDPIQAYLALRGLKTLG--LRMEKHNKNGMELARFLRD  277 (384)
T ss_pred             CCHHHHHHHHhCCCcHH--HHHHHHHHHHHHHHHHHHc
Confidence            57888877777666663  3556667777777776664

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=93.97  E-value=0.29  Score=37.37  Aligned_cols=102  Identities=7%  Similarity=0.007  Sum_probs=54.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc---cCcccccccccc----cccc--------ce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ---LGGYFLKPEFVP----QQAY--------RV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg---~gG~~~~~~~~~----~~~~--------~~   65 (119)
                      ++++.||+++++|=+|+ +|-.  ..-.+..+    .++..-=|.+|   .|.++.+..+..    ..+.        ..
T Consensus       157 ~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~----~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (355)
T cd00611         157 EVPDTGGVPLVADMSSN-ILSR--PIDVSKFG----VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADN  229 (355)
T ss_pred             eecccCCCeEEEEcccc-ccCC--CCCHHHhC----EEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhc
Confidence            36778999999999986 3221  11122222    22222346554   233344332221    1000        00


Q ss_pred             eeccC-CCHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhh
Q psy4800          66 FNTWM-GDPGKVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ~~T~~-~~p~~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+++ .|-....+..++|+++.++ +   +.++.+++.+++++.|+++
T Consensus       230 ~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~  278 (355)
T cd00611         230 NSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS  278 (355)
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            11222 3344667778899998765 3   4456678888888888876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=93.87  E-value=0.19  Score=39.73  Aligned_cols=18  Identities=22%  Similarity=0.314  Sum_probs=16.0

Q ss_pred             ChhhhhCCEEEEcccccc
Q psy4800           1 MYEKYHGSALLIDEVQTG   18 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG   18 (119)
                      ++|++|++++|.||+...
T Consensus       227 ~~~~~~~i~lI~DEiYa~  244 (447)
T PLN02607        227 DFVVRKNIHLVSDEIYSG  244 (447)
T ss_pred             HHHHHCCCEEEEeccccc
Confidence            479999999999999875

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=93.79  E-value=0.042  Score=42.59  Aligned_cols=85  Identities=19%  Similarity=0.198  Sum_probs=39.3

Q ss_pred             ChhhhhCCEEEEccccccc-------cCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCccccccc-ccccc-ccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGG-------GPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLKPE-FVPQQ-AYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~-------Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~~-~~~~~-~~~~~~   67 (119)
                      +++++|++++|.|-. +|.       |-....-..+...  ..+|+++||  |.||  ..|+++..+ +.+.. .....-
T Consensus       164 ~la~~~~lp~i~Dlg-sG~l~dl~~~gl~~Ep~v~~~~~--~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~pl~R  240 (367)
T PF03841_consen  164 ELAKEHGLPVIVDLG-SGLLVDLSPYGLPDEPTVQEYLA--AGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKHPLGR  240 (367)
T ss_dssp             HHHHHHT--EEEE-T-THHHHHHHTT----------CCC--CT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHHHHTT
T ss_pred             HHHhhcCCcEEEECC-CCCCcCcccccCccccHHHHHhh--cCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhCCCcc
Confidence            478999999999966 321       1111111112122  238999997  7775  457777543 33211 111222


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN   88 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~   88 (119)
                      .+--+....++-.++|+.+.+
T Consensus       241 alrvdK~tla~L~atL~~Y~~  261 (367)
T PF03841_consen  241 ALRVDKLTLAALEATLRLYLD  261 (367)
T ss_dssp             T-B--HHHHHHHHHHHHH---
T ss_pred             eEeeCHHHHHHHHHHHHHHHH
Confidence            334567788888888887653

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=93.45  E-value=0.36  Score=38.66  Aligned_cols=106  Identities=14%  Similarity=0.061  Sum_probs=56.9

Q ss_pred             ChhhhhCCEEEEccccc---cc-------cCCCcc---hhhhhcCCCCCCCEE--EEchhhc--cCccccccc-----cc
Q psy4800           1 MYEKYHGSALLIDEVQT---GG-------GPCGKF---WCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE-----FV   58 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t---G~-------Gr~G~~---~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~-----~~   58 (119)
                      ++|++||+.+++|=+.-   .+       +-.|..   .+-+.+.   ..|.+  +++|+++  .||+++.+.     +.
T Consensus       211 ~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~---~aDsvt~slsKglgApvGg~Lag~d~~~~~l~  287 (467)
T TIGR02617       211 EIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK---YADMLAMSAKKDAMVPMGGLLCFKDDSFFDVY  287 (467)
T ss_pred             HHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc---cCCEEEEEcCCCCCCcccceEEecchhHHHHH
Confidence            48999999999996531   11       112211   1112222   37876  8999997  577776432     11


Q ss_pred             cc----c-ccceeeccCCCHHHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          59 PQ----Q-AYRVFNTWMGDPGKVLLLKG-IIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        59 ~~----~-~~~~~~T~~~~p~~~a~a~a-~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..    . ....+-||+|-.---..+++ .|+-..+++.++.--...+||.++|++.
T Consensus       288 ~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       288 TECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             HHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence            11    1 22345688874442222333 3444444554443333346888888765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=93.37  E-value=0.32  Score=38.04  Aligned_cols=29  Identities=10%  Similarity=0.112  Sum_probs=18.6

Q ss_pred             HHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          81 GIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        81 a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++.+.++   +..++..++.++++++|+++
T Consensus       340 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  371 (447)
T PRK00451        340 IYMSLLGPEGLRELAEQNHQKAHYLAERLAEI  371 (447)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345544332   45566778888888888765

>PRK06836 aspartate aminotransferase; Provisional

Probab=93.35  E-value=0.13  Score=39.59  Aligned_cols=19  Identities=16%  Similarity=-0.097  Sum_probs=15.8

Q ss_pred             Chhhh------hCCEEEEccccccc
Q psy4800           1 MYEKY------HGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~------~~~lli~DEv~tG~   19 (119)
                      ++|++      ||+++|.||+...+
T Consensus       195 ~la~~~~~~~~~~~~ii~De~y~~~  219 (394)
T PRK06836        195 ALLEEKSKEYGRPIYLISDEPYREI  219 (394)
T ss_pred             HHHHHhhhccCCCeEEEEecccccc
Confidence            36777      89999999998755

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=93.14  E-value=0.5  Score=36.90  Aligned_cols=99  Identities=21%  Similarity=0.287  Sum_probs=57.2

Q ss_pred             ChhhhhCCEEEEccccccccCC--CcchhhhhcCCCCCCCEEEEc----hhhc--cCcccccc--cc-------ccc--c
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPC--GKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKP--EF-------VPQ--Q   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~--G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~--~~-------~~~--~   61 (119)
                      +||++||+++|-|=+|. +|-+  |+     +.|--  -|+.+||    |-|.  -||+++..  ++       .+.  .
T Consensus       143 ~la~~~~l~vIEDaAqa-~Ga~y~gk-----~vGt~--Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~  214 (374)
T COG0399         143 ALAKRHGLPVIEDAAQA-HGATYKGK-----KVGSF--GDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLS  214 (374)
T ss_pred             HHHHHcCCeEEEEcchh-ccCeecCc-----ccccc--cceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcC
Confidence            48999999999999974 3222  11     11111  3444333    5554  26666632  11       111  1


Q ss_pred             c-----c---ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 A-----Y---RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~-----~---~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +     .   ..+..+-.+-+.+|.++.-|+.++  ++.++-+++.++..+.|+++
T Consensus       215 ~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~--~~~~~R~~~a~~Y~~~l~~~  268 (374)
T COG0399         215 RDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLD--EINERRREIAQIYAEALKGL  268 (374)
T ss_pred             CCccccceeeecccccCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence            1     1   123445567777788888787775  35566667777788888765

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=93.12  E-value=0.3  Score=39.02  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=56.1

Q ss_pred             ChhhhhCCEEEEcccccccc-----------CCCcch---hhhhcCCCCCCCEEEEchhh---c--cCcccc-cc-cccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG-----------PCGKFW---CHEHFDLEESPDIVTFSKKM---Q--LGGYFL-KP-EFVP   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G-----------r~G~~~---~~~~~g~~~~pDi~t~gK~l---g--~gG~~~-~~-~~~~   59 (119)
                      ++|++||+.+|.|=++. +|           -.+..-   .-+.+.   ..|.+ ++|+.   +  .||++. .+ .+..
T Consensus       198 elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~i~ei~~e~~~---~aD~~-~~S~~Kd~~~~~GG~l~~~d~~l~~  272 (450)
T TIGR02618       198 ELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKSIAEILKEMMS---YADGC-TMSGKKDCLVNIGGFLCMNDDEMFQ  272 (450)
T ss_pred             HHHHHcCCEEEEEccch-hhChhhhhcccccccCCCHHHHHHHHhc---cCcEE-EEeeccCCCCCCceEEEeCCHHHHH
Confidence            48999999999999874 21           111100   011121   26774 44443   2  577777 32 2322


Q ss_pred             c----ccc-ceeeccCCCHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          60 Q----QAY-RVFNTWMGDPG-KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ~----~~~-~~~~T~~~~p~-~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .    ... .-+-||++=.. .+.+..-+|+-..++...++.....++|.+.|++.
T Consensus       273 k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~  328 (450)
T TIGR02618       273 SAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA  328 (450)
T ss_pred             HHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            1    111 23456666222 33333334555444556666666788999999887

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK02769 histidine decarboxylase; Provisional

Probab=92.88  E-value=0.74  Score=35.81  Aligned_cols=106  Identities=16%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             ChhhhhC---CEEEEccccccccCCCcchhhh--hcCCCCCCCEEEEc--hhhc----cCccccccccccc---cccce-
Q psy4800           1 MYEKYHG---SALLIDEVQTGGGPCGKFWCHE--HFDLEESPDIVTFS--KKMQ----LGGYFLKPEFVPQ---QAYRV-   65 (119)
Q Consensus         1 ~l~~~~~---~lli~DEv~tG~Gr~G~~~~~~--~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~~~~---~~~~~-   65 (119)
                      ++|++||   +++.+|=+|.|+ ..-  +.-.  .+.....+|.++++  |-++    .|.+..++.....   ...++ 
T Consensus       184 ~i~~~~g~~~~~lHVDaA~gg~-~~p--~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~  260 (380)
T PRK02769        184 EILKKIGIDDYYIHADAALSGM-ILP--FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIG  260 (380)
T ss_pred             HHHHHhCCCceEEEEEecccce-eec--ccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccC
Confidence            4789998   699999998763 221  1000  12222237888665  6543    2333333322110   01111 


Q ss_pred             --eeccCCCH--HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800          66 --FNTWMGDP--GKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 --~~T~~~~p--~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l  109 (119)
                        -.|+.|++  .+.+...++|+.+..++   ..++..++.+++.++|++.
T Consensus       261 ~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~  311 (380)
T PRK02769        261 SRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN  311 (380)
T ss_pred             CCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence              12334433  45667778888886544   4566788889999998764

>PRK08637 hypothetical protein; Provisional

Probab=92.65  E-value=0.4  Score=36.87  Aligned_cols=14  Identities=14%  Similarity=0.173  Sum_probs=12.7

Q ss_pred             hCCEEEEccccccc
Q psy4800           6 HGSALLIDEVQTGG   19 (119)
Q Consensus         6 ~~~lli~DEv~tG~   19 (119)
                      |++++|.||+...|
T Consensus       183 ~~~~iI~De~Y~~l  196 (388)
T PRK08637        183 TKVVAVVDDAYFGL  196 (388)
T ss_pred             CcEEEEecccchhc
Confidence            99999999998765

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.11  E-value=0.4  Score=37.92  Aligned_cols=17  Identities=29%  Similarity=0.345  Sum_probs=15.2

Q ss_pred             ChhhhhCCEEEEccccc
Q psy4800           1 MYEKYHGSALLIDEVQT   17 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t   17 (119)
                      ++|++||+++|+|.+|.
T Consensus       173 ~la~~~gi~livD~t~a  189 (433)
T PRK08134        173 AIAHEAGVPLLVDSTFT  189 (433)
T ss_pred             HHHHHcCCEEEEECCCc
Confidence            47999999999999984

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=92.01  E-value=1  Score=39.46  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=25.6

Q ss_pred             ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEEEE--chhhc
Q psy4800           1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIVTF--SKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg   47 (119)
                      ++|+++|+++++|=+|. +. +.. ..   ..+|    .|++++  .|.++
T Consensus       690 ~iah~~Galv~vDgAq~~a~~~l~-~p---~~~G----aD~~~~s~HK~f~  732 (993)
T PLN02414        690 DIIHDNGGQVYMDGANMNAQVGLT-SP---GFIG----ADVCHLNLHKTFC  732 (993)
T ss_pred             HHHHHcCCEEEEEecCHHhccCcC-Cc---cccC----CCEEEecCCccCC
Confidence            47899999999999985 32 111 11   1223    788866  78664

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=91.57  E-value=0.64  Score=37.00  Aligned_cols=99  Identities=10%  Similarity=0.019  Sum_probs=47.2

Q ss_pred             ChhhhhCCEEEEccccccccCCC-cch-hhhhcCCC-CCCCEEEEchhhcc---Ccccccc-ccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG-KFW-CHEHFDLE-ESPDIVTFSKKMQL---GGYFLKP-EFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G-~~~-~~~~~g~~-~~pDi~t~gK~lg~---gG~~~~~-~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++||+++|=||...=| +.. ..- ....+.-. ...-+-+|||.|.-   -||++.. .+... .......+.+.+
T Consensus       254 ~lA~~~~~~IIEDD~y~el-~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s  332 (459)
T COG1167         254 ALAEKYDVLIIEDDYYGEL-RYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPS  332 (459)
T ss_pred             HHHHHcCCeEEeeCcchhh-hcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHHhcCCCC
Confidence            4799999999999996534 222 211 11111111 01234499999951   3566543 33321 122233444455


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILL  103 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~  103 (119)
                      ++.-.+...   .+.+..+.++++++-+.++
T Consensus       333 ~~~Q~~la~---~l~~G~~~~hl~~lR~~y~  360 (459)
T COG1167         333 SLSQAALAA---FLLSGHYDRHLRRLRREYA  360 (459)
T ss_pred             hHHHHHHHH---HHHcCCHHHHHHHHHHHHH
Confidence            555333322   3333334444444443333

>PRK15029 arginine decarboxylase; Provisional

Probab=91.10  E-value=0.59  Score=39.69  Aligned_cols=108  Identities=11%  Similarity=0.047  Sum_probs=57.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCC-----C-CCCC-EEE--Echhhc--cCcccc--ccc---cccc----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDL-----E-ESPD-IVT--FSKKMQ--LGGYFL--KPE---FVPQ----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~-----~-~~pD-i~t--~gK~lg--~gG~~~--~~~---~~~~----   60 (119)
                      ++|.++++.|+|||+|.+.-+....+- .+..+     . ..|| ++|  .=|-|+  +-+..+  .+.   +...    
T Consensus       335 ~~~h~~~~~llvDEAhGah~~F~~~~p-~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~  413 (755)
T PRK15029        335 DLLEKTSDRLHFDEAWYGYARFNPIYA-DHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ  413 (755)
T ss_pred             HHHHhcCCeEEEECccccccccCcccc-ccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHH
Confidence            478999999999999865434444321 11111     1 2378 664  446664  212111  111   2110    


Q ss_pred             cccceeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhh
Q psy4800          61 QAYRVFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        61 ~~~~~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      .-..+.|| +.+=+-+|..-.+.++++.   +++.++..+....||+.++++.
T Consensus       414 ~l~~~qST-SPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        414 AYMMHATT-SPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             HHHHHcCC-CcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            11122344 4444445555555556653   2466777788888999997764

>KOG0633|consensus

Probab=90.96  E-value=0.65  Score=35.03  Aligned_cols=39  Identities=21%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             CCEEEEccccccccCCCc--chhhhhcCCCCCCCEE---EEchhhccCcc
Q psy4800           7 GSALLIDEVQTGGGPCGK--FWCHEHFDLEESPDIV---TFSKKMQLGGY   51 (119)
Q Consensus         7 ~~lli~DEv~tG~Gr~G~--~~~~~~~g~~~~pDi~---t~gK~lg~gG~   51 (119)
                      +.++++||+.--|--.+.  .|.-+ |     |.++   ||||++|..|+
T Consensus       191 nglVVvDEAYidFsg~~S~~~lV~k-Y-----pNLivlqTlSKsfGLAGi  234 (375)
T KOG0633|consen  191 NGLVVVDEAYIDFSGVESRMKLVKK-Y-----PNLIVLQTLSKSFGLAGI  234 (375)
T ss_pred             CcEEEEeeeeEeeccccccchHhHh-C-----CceeehhhhhhhcCccee
Confidence            689999999865411222  22222 2     5555   89999984443

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=90.77  E-value=0.92  Score=35.61  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|++||++||+|-..+      ..+.++....-  .||+  ...|-+|
T Consensus       171 ~iAh~~gvpliVDNT~a------tpyl~rP~~hG--ADIVvHS~TK~ig  211 (426)
T COG2873         171 EIAHRHGVPLIVDNTFA------TPYLCRPIEHG--ADIVVHSATKYIG  211 (426)
T ss_pred             HHHHHcCCcEEEecCCC------cceecchhhcC--CCEEEEeeccccc
Confidence            47999999999998743      12333433322  7888  6889986

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=90.76  E-value=0.65  Score=36.82  Aligned_cols=45  Identities=16%  Similarity=0.225  Sum_probs=28.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFL   53 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~   53 (119)
                      ++|+++|+++|+|.+|. .|..   .-...+|    .|++  .+-|-+++     ||+++
T Consensus       179 ~la~~~gi~livD~t~a-~g~~---~~p~~~G----aDivv~S~~K~l~G~gd~~gG~vv  230 (437)
T PRK05613        179 EVAHRNQVPLIVDNTIA-TAAL---VRPLELG----ADVVVASLTKFYTGNGSGLGGVLI  230 (437)
T ss_pred             HHHHHcCCeEEEECCCc-cccc---cChHHhC----CCEEEeeccceecCCCcceeEEEE
Confidence            47999999999999974 2221   1111234    6877  55687752     46555

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=90.64  E-value=0.36  Score=39.24  Aligned_cols=19  Identities=16%  Similarity=-0.029  Sum_probs=15.5

Q ss_pred             Chhhhh--CCEEEEccccccc
Q psy4800           1 MYEKYH--GSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~--~~lli~DEv~tG~   19 (119)
                      ++|++|  ++++|.||+..-|
T Consensus       267 ~ia~~~~~~l~II~DEvY~~f  287 (521)
T TIGR03801       267 DIVANDRPDLMILTDDVYGTF  287 (521)
T ss_pred             HHHHhcCCCeEEEECCCchhh
Confidence            368886  9999999997655

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02724 Molybdenum cofactor sulfurase

Probab=90.21  E-value=1.5  Score=37.47  Aligned_cols=40  Identities=8%  Similarity=-0.085  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      .|..++++..++++++.+   +...++.+++.+++.+.|+++.
T Consensus       318 ~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~  360 (805)
T PLN02724        318 ISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLK  360 (805)
T ss_pred             cchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhcc
Confidence            466777778888988876   3566788999999999998763

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=89.73  E-value=1.3  Score=34.80  Aligned_cols=103  Identities=21%  Similarity=0.244  Sum_probs=59.4

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc--cccccccccee-eccCCC
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP--EFVPQQAYRVF-NTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~--~~~~~~~~~~~-~T~~~~   72 (119)
                      ++|++.|++|++|=+|- |+=-.|   .++ -.+ ...|++  |.=|.|.  -||+++..  ++...-....| .+ .|+
T Consensus       188 eIad~VGA~L~~DmAHiaGLVA~G---~~p-~P~-~~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin~aVFPg~-qgg  261 (413)
T COG0112         188 EIADEVGAYLMVDMAHVAGLIAGG---VHP-NPL-PHADVVTTTTHKTLRGPRGGIILTNDEELAKKINSAVFPGL-QGG  261 (413)
T ss_pred             HHHHHhCceEEehHHHHHHHHhcc---cCC-CCC-CccceEeCCcccCCCCCCceEEEeccHHHHHHhhhhcCCcc-CCC
Confidence            47999999999999984 652222   222 122 237998  6779985  57888754  34332122222 33 444


Q ss_pred             HHHHHHHHH--HHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKG--IIDTIHNEN---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a--~l~~i~~~~---~~~~~~~~g~~l~~~L~~l  109 (119)
                      |+--..|-.  ++....+++   ..+++-+|.+.|.+.|.+.
T Consensus       262 pl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~  303 (413)
T COG0112         262 PLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER  303 (413)
T ss_pred             hHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc
Confidence            543222222  222233333   4567888888888888764

>KOG0256|consensus

Probab=89.59  E-value=1.6  Score=34.64  Aligned_cols=51  Identities=25%  Similarity=0.282  Sum_probs=30.3

Q ss_pred             hhhhhCCEEEEcccccc--ccCCCcchhhhhc-CCCCCCC---EE-EEchhhccCccc
Q psy4800           2 YEKYHGSALLIDEVQTG--GGPCGKFWCHEHF-DLEESPD---IV-TFSKKMQLGGYF   52 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG--~Gr~G~~~~~~~~-g~~~~pD---i~-t~gK~lg~gG~~   52 (119)
                      .+.++++-+|+|||..|  |+..+-.-..+.. .....||   |+ .+||=+|.-|+=
T Consensus       254 Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfR  311 (471)
T KOG0256|consen  254 FASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFR  311 (471)
T ss_pred             HHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceE
Confidence            46789999999999987  5554321111211 1111255   33 899999744543

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=88.78  E-value=0.32  Score=37.98  Aligned_cols=96  Identities=19%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             ChhhhhC-CEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c--ccccc---ccccee
Q psy4800           1 MYEKYHG-SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P--EFVPQ---QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~-~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~--~~~~~---~~~~~~   66 (119)
                      ++|+++| +++|+|.....      ...++.+..-  .||+  ...|-+++     +|.++. +  .+.+.   .....+
T Consensus       164 ~~a~~~g~~~~vVDnT~at------p~~~~pL~~G--aDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G  235 (386)
T PF01053_consen  164 KLAKEHGDILVVVDNTFAT------PYNQNPLELG--ADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLG  235 (386)
T ss_dssp             HHHHHTTT-EEEEECTTTH------TTTC-GGGGT---SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCceEEeeccccc------eeeeccCcCC--ceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcC
Confidence            4789998 99999997421      1122222222  6877  67888841     344442 1  22221   111111


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .  ..+|..+-..+..|+-+.  -+.++..++...+.+.|++
T Consensus       236 ~--~~~p~da~ll~rgl~Tl~--~R~~~~~~nA~~lA~~L~~  273 (386)
T PF01053_consen  236 A--TLSPFDAWLLLRGLRTLP--LRMERQNENAEALAEFLEE  273 (386)
T ss_dssp             ---B--HHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             c--cchHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            2  235555554444444332  3446667777777777765

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=88.65  E-value=2.6  Score=32.25  Aligned_cols=100  Identities=6%  Similarity=-0.042  Sum_probs=54.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cCccc-cccccc----ccccc--------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LGGYF-LKPEFV----PQQAY--------   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~gG~~-~~~~~~----~~~~~--------   63 (119)
                      ++++.|++++++|=+++ +|-.  ..-.+      ..|+++  --|++|  +-|++ .++...    +..+.        
T Consensus       149 ~l~~~~~~l~iVDavss-~g~~--~id~~------~~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~  219 (349)
T TIGR01364       149 ELPDVKNAPLVADMSSN-ILSR--PIDVS------KFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHA  219 (349)
T ss_pred             eecccCCCeEEEEcccc-ccCc--cCCHH------HccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHH
Confidence            46788999999999975 4211  11111      134553  347765  22332 222211    11000        


Q ss_pred             ceeecc-CCCHHHHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhh
Q psy4800          64 RVFNTW-MGDPGKVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 ~~~~T~-~~~p~~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l  109 (119)
                      ....++ ..|-..+.+..++|+++.++ +   +.++.+++.+++++.|+++
T Consensus       220 ~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~  270 (349)
T TIGR01364       220 ENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS  270 (349)
T ss_pred             hcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            001233 23444666677899998765 3   4456677888888888776

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=88.50  E-value=3.2  Score=33.77  Aligned_cols=108  Identities=19%  Similarity=0.251  Sum_probs=54.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcc-ccccc-ccc---ccccce-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGY-FLKPE-FVP---QQAYRV-----   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~-~~~~~-~~~---~~~~~~-----   65 (119)
                      ++|++||+++.+|=++.|.-..-.-.-....+++ ..|.++++  |.+.   +.|+ ..++. +.+   ....+.     
T Consensus       289 ~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle-~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~  367 (522)
T TIGR03799       289 DIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIE-RADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGS  367 (522)
T ss_pred             HHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCch-hCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCC
Confidence            4799999999999997653111111111123442 47988765  7553   2233 33321 111   000010     


Q ss_pred             ----eeccCCC-HHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800          66 ----FNTWMGD-PGKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ----~~T~~~~-p~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l  109 (119)
                          ..|+.+. |.......++|+.+...+   ..++..++.++|.+.|++.
T Consensus       368 ~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~  419 (522)
T TIGR03799       368 KDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ  419 (522)
T ss_pred             CccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                0122222 222224667788876543   4455667777777777653

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=88.25  E-value=0.51  Score=37.12  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=51.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-----cCccccc-c-cccccc---ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-----LGGYFLK-P-EFVPQQ---AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-----~gG~~~~-~-~~~~~~---~~~~~~T   68 (119)
                      ++++++|+++|+|....    ++.  .++.+..-  .||+  ...|=++     .+|+++. . .+.+..   ......+
T Consensus       173 ~~A~~~g~~vvVDNTfa----tP~--~q~PL~~G--aDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~  244 (396)
T COG0626         173 RLAKAYGALVVVDNTFA----TPV--LQRPLELG--ADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA  244 (396)
T ss_pred             HHHHhcCCEEEEECCcc----ccc--ccChhhcC--CCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence            47899999999999742    221  12222222  7888  6778885     2354442 2 222211   1111222


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                       ...|..+=..+..|+-+.  -..++..+++..+.+.|++
T Consensus       245 -~l~p~dA~l~lRGlkTL~--~Rm~~~~~nA~~IA~~L~~  281 (396)
T COG0626         245 -VLSPFDAWLLLRGLRTLA--LRMERHNENALKIAEFLAD  281 (396)
T ss_pred             -CCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHhc
Confidence             355666554444444442  2345666777776666665

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=88.14  E-value=2  Score=33.11  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhhh-c---HHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHNE-N---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~l  109 (119)
                      +..+..++|+.+.+. .   ..+|.+++.+++++.|+++
T Consensus       253 ~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~  291 (378)
T PRK03080        253 TVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKT  291 (378)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            445557899998764 3   4456777888888887765

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=87.94  E-value=2.3  Score=33.16  Aligned_cols=100  Identities=12%  Similarity=-0.029  Sum_probs=54.9

Q ss_pred             hhhh-hCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc-cCccc--c-ccc-c---cccc------c--
Q psy4800           2 YEKY-HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ-LGGYF--L-KPE-F---VPQQ------A--   62 (119)
Q Consensus         2 l~~~-~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg-~gG~~--~-~~~-~---~~~~------~--   62 (119)
                      ++++ +++++|+|=+ +.+|  |...-.+      ..|++.  --|+|+ -+|+.  . +++ +   ....      +  
T Consensus       149 i~~~~~~~lliVDav-Ss~g--~~~l~~d------~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~  219 (374)
T TIGR01365       149 FIPADREGLTICDAT-SAAF--AQDLDYH------KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIF  219 (374)
T ss_pred             cccccCCCcEEEEcc-chhc--CCCCChh------HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhh
Confidence            3444 5899999988 6664  2222222      278774  559986 34542  1 211 1   0000      0  


Q ss_pred             ----------c-ceeeccCCCHH-HHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhhh
Q psy4800          63 ----------Y-RVFNTWMGDPG-KVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        63 ----------~-~~~~T~~~~p~-~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l~  110 (119)
                                . .-.+|..-+|+ ..-+.+.+|+.++++    +..+|.+++.+.+++.++++.
T Consensus       220 ~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg  283 (374)
T TIGR01365       220 RLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNN  283 (374)
T ss_pred             ccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                      0 01233333333 455566777777653    355667888888888888864

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=86.62  E-value=0.79  Score=35.90  Aligned_cols=108  Identities=17%  Similarity=0.219  Sum_probs=52.9

Q ss_pred             hhhhhCCEEEEccccccccCCCc--chhhhhcCCCCCCCEE--EEchhhc-----cCccccccc-------cccccccce
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGK--FWCHEHFDLEESPDIV--TFSKKMQ-----LGGYFLKPE-------FVPQQAYRV   65 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~~g~~~~pDi~--t~gK~lg-----~gG~~~~~~-------~~~~~~~~~   65 (119)
                      +.++.+.+-++|=+.-|||.-..  .++...+--..++=++  .|||.+|     .|++.+...       +...-...+
T Consensus       200 ~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~i  279 (396)
T COG1448         200 LIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAII  279 (396)
T ss_pred             HHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHH
Confidence            45788999999999999964322  1122211001113333  6999996     355544211       111112233


Q ss_pred             eeccCCCHHH-HHHHHHHHH--HHhh------hcHHHHHHHHHHHHHHHHHhh
Q psy4800          66 FNTWMGDPGK-VLLLKGIID--TIHN------ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ~~T~~~~p~~-~a~a~a~l~--~i~~------~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      -++|+.+|.- +++...+|+  .++.      ++.++|+.++-+.|.+.|++.
T Consensus       280 R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~  332 (396)
T COG1448         280 RTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKAL  332 (396)
T ss_pred             HhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566666653 333333322  1111      134455555555566666654

>PRK08114 cystathionine beta-lyase; Provisional

Probab=85.63  E-value=1.1  Score=35.20  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=50.6

Q ss_pred             ChhhhhC--CEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cccccccc--cceeec
Q psy4800           1 MYEKYHG--SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFVPQQA--YRVFNT   68 (119)
Q Consensus         1 ~l~~~~~--~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~~~~~--~~~~~T   68 (119)
                      ++|++++  +++|+|.++.    +|..  ++...+-  +|++  ...|.+++     +|++.. +.+.....  .....+
T Consensus       171 ~ia~~~g~g~~lvVDnT~a----~p~~--~~pl~~G--aDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~  242 (395)
T PRK08114        171 AAVRSVNPDAVIMIDNTWA----AGVL--FKALDFG--IDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQ  242 (395)
T ss_pred             HHHHHhCCCCEEEEECCCc----cccc--cCHHHcC--CcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccC
Confidence            4688984  9999999974    1222  2222222  7887  57798742     243332 22211100  011122


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                       ..+|..+-..+..|+-+.  -..++..++...+.+.|++
T Consensus       243 -~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~va~~L~~  279 (395)
T PRK08114        243 -MVDADTAYMTSRGLRTLG--VRLRQHEESSLKVAEWLAE  279 (395)
T ss_pred             -CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHc
Confidence             456776665555554432  2345566666666666664

>KOG1368|consensus

Probab=85.47  E-value=0.31  Score=37.23  Aligned_cols=99  Identities=17%  Similarity=0.102  Sum_probs=49.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCC-----CCCCEE--EEchhhc--cCccccccc-cccccc---cceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE-----ESPDIV--TFSKKMQ--LGGYFLKPE-FVPQQA---YRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~-----~~pDi~--t~gK~lg--~gG~~~~~~-~~~~~~---~~~~~   67 (119)
                      +||++||+-|-+|-+.-       |-+.-..|+.     ...|-+  ||||+||  .|.+++.+. |....+   .-.+.
T Consensus       182 ~lak~~glkLH~DGARi-------~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGG  254 (384)
T KOG1368|consen  182 ALAKRHGLKLHMDGARI-------FNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGG  254 (384)
T ss_pred             HHHhccCCeeecchhhh-------hhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHHHhcC
Confidence            47899999998886632       1111122221     125654  9999996  344444432 332211   11122


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      -+--.-+-+|+++-+|+.-  -..++..++..+.+.+.++.
T Consensus       255 GmRQsGvLaaaaLval~~~--~~~L~~dHk~A~~lAe~~~~  293 (384)
T KOG1368|consen  255 GMRQSGVLAAAALVALDEN--VPLLRADHKRAKELAEYINT  293 (384)
T ss_pred             chhHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHhcc
Confidence            1122334455555555432  12445556666666666653

>PRK09275 aspartate aminotransferase; Provisional

Probab=85.14  E-value=1.8  Score=35.27  Aligned_cols=18  Identities=11%  Similarity=-0.027  Sum_probs=14.2

Q ss_pred             hhhh--hCCEEEEccccccc
Q psy4800           2 YEKY--HGSALLIDEVQTGG   19 (119)
Q Consensus         2 l~~~--~~~lli~DEv~tG~   19 (119)
                      +|++  +++++|.||+..-|
T Consensus       269 ia~~~~~~l~II~DEvY~~f  288 (527)
T PRK09275        269 IVNEKRPDLMIITDDVYGTF  288 (527)
T ss_pred             HHHhcCCCcEEEECCCChhh
Confidence            5754  59999999998655

>PRK12566 glycine dehydrogenase; Provisional

Probab=84.04  E-value=9.5  Score=33.49  Aligned_cols=40  Identities=13%  Similarity=0.170  Sum_probs=26.6

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg   47 (119)
                      ++|+++|+++++|=+|. +.+.....   ..+|    .|++++.  |.++
T Consensus       665 ~iah~~Galv~vDgA~~~a~~~l~~P---g~~G----ADi~~~s~HKtf~  707 (954)
T PRK12566        665 EVVHQHGGQVYMDGANLNAQVGLARP---ADIG----ADVSHMNLHKTFC  707 (954)
T ss_pred             HHHHHcCCEEEEEeeChhhccCCCCh---hhcC----CCEEEecCCcccC
Confidence            46889999999999985 33222211   2233    7998775  9774

>PLN02880 tyrosine decarboxylase

Probab=80.95  E-value=1.9  Score=34.76  Aligned_cols=46  Identities=17%  Similarity=0.081  Sum_probs=27.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg   47 (119)
                      ++|++||++|.+|=++.|+-..-..+-+...|++ .+|-++  .=|.+.
T Consensus       263 ~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie-~aDSit~d~HKwl~  310 (490)
T PLN02880        263 KIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE-EADSFNMNAHKWFL  310 (490)
T ss_pred             HHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch-hcCEEEECchhhcC
Confidence            4899999999999776553121111111123542 478764  567763

>PLN03032 serine decarboxylase; Provisional

Probab=80.62  E-value=9.5  Score=29.73  Aligned_cols=108  Identities=15%  Similarity=-0.000  Sum_probs=55.8

Q ss_pred             ChhhhhC-----CEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc----cCcccccccccc---cccccee
Q psy4800           1 MYEKYHG-----SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ----LGGYFLKPEFVP---QQAYRVF   66 (119)
Q Consensus         1 ~l~~~~~-----~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg----~gG~~~~~~~~~---~~~~~~~   66 (119)
                      ++|++||     ++|.+|=++.|+ ..-..-....+......|.++++  |-+|    .|.++.+.....   ....+..
T Consensus       185 ~i~~~~g~~~~~~~lHvDaA~gg~-~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~  263 (374)
T PLN03032        185 RILKELGYTEDRFYIHCDGALFGL-MMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLN  263 (374)
T ss_pred             HHHHHhCCCCCCeeEEEEccchhh-hhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccC
Confidence            4788986     589999997653 11000000111111237877654  4432    233333322211   1111111


Q ss_pred             ---eccCCCH--HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhh
Q psy4800          67 ---NTWMGDP--GKVLLLKGIIDTIHNEN---LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ---~T~~~~p--~~~a~a~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~l  109 (119)
                         .|..|+.  ...+...++|+.+-.++   ..++.-++.++|.++|++.
T Consensus       264 ~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~  314 (374)
T PLN03032        264 SRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA  314 (374)
T ss_pred             CCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               2444442  44566677777775544   4556678888999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		2e-29
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		7e-08
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		7e-08
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		7e-08
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		2e-07
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		4e-07
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		4e-05
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		4e-05
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		3e-04
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		3e-04
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		3e-04
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		5e-04
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		7e-04
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		8e-04
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		9e-04

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 71/106 (66%)
Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           + HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   Y
Sbjct: 289 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPY 348
Query: 64  RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL 109
           R+FNTW+GDP K LLL  +I+ I  E+LL      G +LL   L L
Sbjct: 349 RIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 394

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10  LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
           L+ DEVQTG G  G  W ++  D+  +PDIV F KK Q+ G  +    V + A  VF   
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67  ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
               +TW G+   ++  + I++ I  E L +R  + G  L
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10  LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
           L+ DEVQTG G  G  W ++  D+  +PDIV F KK Q+ G  +    V + A  VF   
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67  ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
               +TW G+   ++  + I++ I  E L +R  + G  L
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10  LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
           L+ DEVQTG G  G  W ++  D+  +PDIV F KK Q+ G  +    V + A  VF   
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67  ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
               +TW G+   ++  + I++ I  E L +R  + G  L
Sbjct: 325 SRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 10  LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
           L+ DEVQTG G  G  W ++  D+  +PDIV F KK Q+ G  +    V + A  VF   
Sbjct: 268 LIFDEVQTGCGLTGTAWAYQQLDV--APDIVAFGKKTQVCG-VMAGRRVDEVADNVFAVP 324
Query: 67  ----NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL 102
               ++W G+   ++  + I++ I  E L +R  + G  L
Sbjct: 325 SRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
           HG+ L+ DEV  G G  GK +   ++D++  PDI+T +K +      L    V ++ Y  
Sbjct: 248 HGALLISDEVICGFGRTGKAFGFXNYDVK--PDIITXAKGITSAYLPLSATAVKREIYEA 305
Query: 66  F------------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
           F            NT+ G+P    L    ++ I NENL++R  + G +LL
Sbjct: 306 FKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQXGSLLL 355

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 10  LLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRVF--- 66
           L+IDEVQTG G  G+F+ ++HF+L+  PD++  +K +  GG  +      ++  + F   
Sbjct: 209 LIIDEVQTGIGRTGEFYAYQHFNLK--PDVIALAKGLG-GGVPIGAILAREEVAQSFTPG 265
Query: 67  ---NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGD 100
              +T+ G+P        ++D +  E LL  V++ G+
Sbjct: 266 SHGSTFGGNPLACRAGTVVVDEV--EKLLPHVREVGN 300

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
           H + L+ DEVQTG G  G+ + + H+ +  +PD++T +K +  GG+ +      ++  RV
Sbjct: 216 HNALLIFDEVQTGVGRTGELYAYMHYGV--TPDLLTTAKALG-GGFPVGALLATEECARV 272
Query: 66  F------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDIL------LNVRLGLGQE 112
                   T+ G+P    +   +++ I+   +L+ V++  D        +N R GL  E
Sbjct: 273 MTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSE 331

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
           HG  L+ DEVQ+G G  G  +  E   +  +PD+ TF+K +     L G   + E +   
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62  AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           A   +  T+ G+P   +    ++     ENLL +    G  L +  L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
           HG  L+ DEVQ+G G  G  +  E   +  +PD+ TF+K +     L G   + E +   
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62  AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           A   +  T+ G+P   +    ++     ENLL +    G  L +  L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
           HG  L+ DEVQ+G G  G  +  E   +  +PD+ TF+K +     L G   + E +   
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62  AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           A   +  T+ G+P   +    ++     ENLL +    G  L +  L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 7   GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
           G+ L++DE+QTG G  GK +  EHF +   PDI+T +K   LGG
Sbjct: 219 GALLILDEIQTGMGRTGKRFAFEHFGI--VPDILTLAKA--LGG 258

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K +    + DEVQTG G  GK  C  H++++  PD++   K +  G Y +          
Sbjct: 243 KKYNVLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKALSGGHYPISAVLANDDIM 300
Query: 64  RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
            V       +T+ G+P    +    ++ + NE L +  +K G   L
Sbjct: 301 LVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 346

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           K +    + DEVQTG G  GK  C  H+ ++  PD++   K +  G Y +          
Sbjct: 224 KKYNVLFVADEVQTGLGRTGKLLCTHHYGVK--PDVILLGKALSGGHYPISAILANDDVM 281
Query: 64  RVF------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTG 99
            V       +T+ G+P    +    +  + NE L +   K G
Sbjct: 282 LVLKPGEHGSTYGGNPLAAAICVEALKVLINEKLCENADKLG 323

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVPQQ 61
           HG  L+ DE Q+G G  G  +  E   +  +PD+ TF+K +     L G   + E +   
Sbjct: 232 HGIMLIADEAQSGAGRTGTLFAMEQMGV--APDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289
Query: 62  AY-RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE 112
           A   +  T+ G+P   +    ++     ENLL +    G  L +  L + ++
Sbjct: 290 APGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK 341

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	2e-43
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	9e-38
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-15
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	7e-14
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	1e-12
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	2e-12
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	3e-12
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	5e-12
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	7e-12
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	9e-12
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	4e-11
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	6e-11
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	3e-10
1z7d_A	433	Ornithine aminotransferase; structural genomics co	1e-09
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	2e-09
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	3e-09
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-08
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	4e-08
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	1e-07
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	2e-07
3hmu_A	472	Aminotransferase, class III; structural genomics,	4e-07
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	6e-07
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	1e-06
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	5e-06
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-05
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	6e-05
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-04
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-04

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  146 bits (371), Expect = 2e-43
 Identities = 55/99 (55%), Positives = 68/99 (68%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAYRV 65
           HG A L+DEVQTGGG  GKFW HEH+ L++  D++TFSKKM  GG+F K EF P   YR+
Sbjct: 291 HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI 350

Query: 66  FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
           FNTW+GDP K LLL  +I+ I  E+LL      G +LL 
Sbjct: 351 FNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT 389

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  131 bits (331), Expect = 9e-38
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL------KPEFVP 59
             + L+ DEVQTG G  G  W ++  D+   PDIV F KK Q+ G           + V 
Sbjct: 264 FDALLIFDEVQTGCGLTGTAWAYQQLDVA--PDIVAFGKKTQVCGVMAGRRVDEVADNVF 321

Query: 60  QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
               R+ +TW G+   ++  + I++ I  E L +R  + G  L  
Sbjct: 322 AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRA 366

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPE---FV 58
            G  L++DE QTG G  G  +  +   +   PDI+T SK     + L             
Sbjct: 236 RGMLLILDEAQTGVGRTGTMFACQRDGVT--PDILTLSKTLGAGLPLAAIVTSAAIEERA 293

Query: 59  PQQAYRVFNTWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
            +  Y  + T + DP       +V      +D +  + L+ R    GD L 
Sbjct: 294 HELGYLFYTTHVSDPLPAAVGLRV------LDVVQRDGLVARANVMGDRLR 338

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 65.3 bits (160), Expect = 7e-14
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
           HG  ++ DEV+ G    G+  C EH      PDI+   K     + L       E +   
Sbjct: 234 HGILVVCDEVKVGLARSGRLHCFEHEGFV--PDILVLGKGLGGGLPLSAVIAPAEILDCA 291

Query: 62  AYRVFNTWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILL 103
           +     T  G+P        VL      +TI  ++L    ++ G +L 
Sbjct: 292 SAFAMQTLHGNPISAAAGLAVL------ETIDRDDLPAMAERKGRLLR 333

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 33/116 (28%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
           +G   + DEVQTG    G ++  EH  +   PDIVT +K     M L     + E     
Sbjct: 258 NGVVFIADEVQTGFARTGAWFASEHEGIV--PDIVTMAKGIAGGMPLSAVTGRAE----- 310

Query: 62  AYRVFNTWMGDPGKVLLLKG--------------IIDTIHNENLLDRVQKTGDILL 103
              + +      G    L G               +  +   +L  R +     + 
Sbjct: 311 ---LMDAV--YAG---GLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVT 358

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 27/122 (22%)

Query: 6   HGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK-----KMQLGGYFLKPE--F 57
           +G  LL+ DEVQ G G  GK +  E+F+    PD++T +K      M +G    + +  F
Sbjct: 245 YG-ILLVDDEVQMGLGRTGKLFAIENFNTV--PDVITLAKALGGGIMPIGATIFRKDLDF 301

Query: 58  VP-QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN--------VRLG 108
            P   +    NT+ G+     +   +ID +  ++LL  V + G I           VR G
Sbjct: 302 KPGMHS----NTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQGLADDVR-G 354

Query: 109 LG 110
           +G
Sbjct: 355 IG 356

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 39/119 (32%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEFVPQQ 61
           +    + DEVQTG    G  +  EH  ++  PD++  +K     + L     + E     
Sbjct: 260 NDVVFIADEVQTGFARTGAMFACEHEGID--PDLIVTAKGIAGGLPLSAVTGRAE----- 312

Query: 62  AYRVFNTWMGDPGKVLLLKGI-----------------IDTIHNENLLDRVQKTGDILL 103
              + ++            G+                 I+TI +E L+ R Q+   I+ 
Sbjct: 313 ---IMDSP--HVS------GLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMK 360

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 15/108 (13%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK----MQLGGYFLKPEF---- 57
           HG  L+ DEVQ+G G  G  +  E   +   PD+ TF+K       L G   + E     
Sbjct: 232 HGIMLIADEVQSGAGRTGTLFAMEQMGVA--PDLTTFAKSIAGGFPLAGVTGRAEVMDAV 289

Query: 58  -VPQQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
                      T+ G+P   +    ++     ENLL +    G  L +
Sbjct: 290 APGGLG----GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKD 333

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 35/118 (29%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------ 59
            G+ L++DE+QTG G  GK +  EHF +   PDI+T +K   LGG        P      
Sbjct: 218 KGALLILDEIQTGMGRTGKRFAFEHFGIV--PDILTLAK--ALGGGV------PLGVAVM 267

Query: 60  -QQAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
            ++  R         T+ G+P         +        +    L +R  + G   + 
Sbjct: 268 REEVARSMPKGGHGTTFGGNPLAMAAGVAAI------RYLERTRLWERAAELGPWFME 319

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 30/116 (25%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF-----LKPEFVPQ 60
               L+ DE+Q G G  GKF+ +EH  +   PDI+T +K   LG        +  + V  
Sbjct: 212 KDILLIADEIQCGMGRSGKFFAYEHAQIL--PDIMTSAKA--LGCGLSVGAFVINQKV-- 265

Query: 61  QAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
            A           T+ G+P        V       +    E +L+ V K    L  
Sbjct: 266 -ASNSLEAGDHGSTYGGNPLVCAGVNAVF------EIFKEEKILENVNKLTPYLEQ 314

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 26/113 (23%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP--EFVPQQAY 63
           + + L+ DEVQ G G  GK + ++ + +   PD++T +K   LGG    P    +  +  
Sbjct: 216 YDALLVFDEVQCGMGRTGKLFAYQKYGVV--PDVLTTAKG--LGGGV--PIGAVIVNERA 269

Query: 64  RVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
            V        T+ G+P        V+        +  E  L+ V++ G+ L+ 
Sbjct: 270 NVLEPGDHGTTFGGNPLACRAGVTVI------KELTKEGFLEEVEEKGNYLMK 316

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score = 56.8 bits (138), Expect = 6e-11
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 35/118 (29%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------ 59
           H + L+ DEVQ G G  G  + + H+ +   PDI+T +K   LGG F      P      
Sbjct: 234 HQALLVFDEVQCGMGRTGDLFAYMHYGVT--PDILTSAKA--LGGGF------PVSAMLT 283

Query: 60  -QQAYRVFN------TWMGDP------GKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
            Q+    F+      T+ G+P      G         D I+   +L  +       + 
Sbjct: 284 TQEIASAFHVGSHGSTYGGNPLACAVAGAAF------DIINTPEVLQGIHTKRQQFVQ 335

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score = 54.8 bits (133), Expect = 3e-10
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 4/45 (8%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG 50
               L+IDEVQTG G  G+F+ ++HF+L+  PD++  +K   LGG
Sbjct: 205 KDVLLIIDEVQTGIGRTGEFYAYQHFNLK--PDVIALAKG--LGG 245

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 23/110 (20%)

Query: 9   ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP-------Q 60
            L + DEVQTG G  GK  C  H++++  PD++   K   L G        P        
Sbjct: 247 VLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKA--LSG-----GHYPISAVLAND 297

Query: 61  QAYRVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
               V        T+ G+P    +    ++ + NE L +  +K G   L 
Sbjct: 298 DIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 347

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 22/112 (19%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP------ 59
                + DE+QTG G  GK +  +  ++   PD+    K   LGG        P      
Sbjct: 215 ENVLFVADEIQTGLGRTGKVFACDWDNVT--PDMYILGKA--LGG-----GVFPISCAAA 265

Query: 60  -QQAYRVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
            +    VF       T+ G+P    +    ++ +  E L +R  + G+ L+ 
Sbjct: 266 NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVG 317

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 23/110 (20%)

Query: 9   ALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP-------Q 60
            L I DE+QTG    G++   ++ ++   PDIV   K   L G        P        
Sbjct: 258 VLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKA--LSG-----GLYPVSAVLCDD 308

Query: 61  QAYRVFN------TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
                        T+ G+P    +    ++ +  ENL +   K G IL N
Sbjct: 309 DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 29/115 (25%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY----R 64
           LLI DEV  G G  GK +   ++D++  PDI+T +K +    Y      +P  A      
Sbjct: 251 LLISDEVICGFGRTGKAFGFMNYDVK--PDIITMAKGIT-SAY------LPLSATAVKRE 301

Query: 65  VFNTWMGDPGKVLLLKGI---------------IDTIHNENLLDRVQKTGDILLN 104
           ++  + G                          ++ I NENL++R  + G +LL 
Sbjct: 302 IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLE 356

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 30/118 (25%), Positives = 38/118 (32%), Gaps = 29/118 (24%)

Query: 6   HGSALLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG-GYF-LKPEFVPQQA 62
            G  + I DEV +G G CG       +     PDI    K   L  GY  L       Q 
Sbjct: 224 AG-IIFIADEVMSGMGRCGSPLALSRWSGVT-PDIAVLGK--GLAAGYAPLAGLLAAPQV 279

Query: 63  YRVF----------NTWMGDPG------KVLLLKGIIDTIHNENLLDRVQKTGDILLN 104
           Y              T+ G P        VL      D +  E+L    ++ G  LL 
Sbjct: 280 YETVMGGSGAFMHGFTYAGHPVSVAAGLSVL------DIVEREDLTGAAKERGAQLLA 331

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 22/113 (19%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYF-LKPEFVPQQAYRVF 66
           LL+ DEV TG G  G  +  + F +   PD++  +K  Q+  G   +       + Y+ F
Sbjct: 255 LLVFDEVITGFGRTGSMFGADSFGVT--PDLMCIAK--QVTNGAIPMGAVIASTEIYQTF 310

Query: 67  NTWMGDPGKVLLLKGI---------------IDTIHNENLLDRVQKTGDILLN 104
                    V    G                +  +  ENL+  V +       
Sbjct: 311 MNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEK 363

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 31/119 (26%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPEFVPQ 60
           +   L+ DEV TG G  G  +  +H+ ++  PD++T +K        L G  +       
Sbjct: 254 YDVLLVADEVVTGFGRLGTMFGSDHYGIK--PDLITIAKGLTSAYAPLSGVIVAD----- 306

Query: 61  QAYRVFNTWMGDPGKVLLLK--------------GI--IDTIHNENLLDRVQKTGDILL 103
              RV+   +    K+  L               G+  ++ I   +L+    +TG    
Sbjct: 307 ---RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFR 362

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 23/113 (20%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-----MQLGGYFLKPEFVPQQAY 63
           LLI DEV  G G  G ++  +   +   P I+T +K        +GG  +  E       
Sbjct: 259 LLIADEVICGFGRTGNWFGTQTMGIR--PHIMTIAKGLSSGYAPIGGSIVCDEV-----A 311

Query: 64  RVF--------NTWMGDP-GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL 107
            V          T+ G P    + L+  +  +  EN+LD V+      L  + 
Sbjct: 312 HVIGKDEFNHGYTYSGHPVAAAVALE-NLRILEEENILDHVRNVAAPYLKEKW 363

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 32/117 (27%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYFLKPEFVPQQAY---- 63
            +I DEV  G G  G  W    +D    PD +  SK   L  G+       P  A     
Sbjct: 266 PVISDEVICGFGRTGNTWGCVTYDFT--PDAIISSK--NLTAGF------FPMGAVILGP 315

Query: 64  RVFNTWMGDPGKVLLLK-GI---------------IDTIHNENLLDRVQKTGDILLN 104
            +          +     G                ID + NE L + V++       
Sbjct: 316 ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEE 372

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 33/118 (27%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEH-FDLEESPDIVTFSKKM-----QLGGYFLKPEFVPQQA 62
           L I DEV TG G CG+++  E  F +   PDI+TF+K +      LGG  +         
Sbjct: 257 LYISDEVVTGFGRCGEWFASEKVFGVV--PDIITFAKGVTSGYVPLGGLAISE------- 307

Query: 63  YRVFNTWMGDPGKVLLLK--------------GI--IDTIHNENLLDRVQKTGDILLN 104
             V     G+  K                    +  I+ +  E ++D+ ++  D    
Sbjct: 308 -AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAA 364

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 19/109 (17%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG-GYF-LKPEFVPQQAYRVF 66
           LL+ DEV  G G  G+++ H+HF  +  PD+ T +K   L  GY  +   FV ++     
Sbjct: 255 LLVADEVICGFGRTGEWFGHQHFGFQ--PDLFTAAK--GLSSGYLPIGAVFVGKRVAEGL 310

Query: 67  ---------NTWMGDP-GKVLLLKGIIDTIHNENLLDRVQ-KTGDILLN 104
                     T+ G P    +     +  + +E ++ RV+   G  +  
Sbjct: 311 IAGGDFNHGFTYSGHPVCAAVAHA-NVAALRDEGIVQRVKDDIGPYMQK 358

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQA----YR 64
           LLI DE+ TG G  G  +  +H  +  SPDI+   K +  GGY      +   A      
Sbjct: 270 LLIFDEIATGFGRTGALFAADHAGV--SPDIMCVGKALT-GGY------LSLAATLCTAD 320

Query: 65  VFNTWMGDPGKVLL 78
           V +T        L+
Sbjct: 321 VAHTISAGAAGALM 334

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 30/113 (26%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQA----YR 64
           LLI DE+ TG G  GK +  EH ++  +PDI+   K +  GG       +   A      
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEI--APDILCLGKALT-GGT------MTLSATLTTRE 291

Query: 65  VFNTWMGDPGKVLL---------------LKGIIDTIHNENLLDRVQKTGDIL 102
           V  T         +                   +  + + +   +V      L
Sbjct: 292 VAETISNGEAGCFMHGPTFMGNPLACAAANAS-LAILESGDWQQQVADIEVQL 343

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY 51
           L+I DEV TG G  GK +  EH ++   PD++   K +  GGY
Sbjct: 247 LMIVDEVATGFGRTGKMFACEHENV--QPDLMAAGKGIT-GGY 286

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 28/114 (24%), Positives = 35/114 (30%), Gaps = 31/114 (27%)

Query: 10  LLI-DEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-GGYFLKPEFVPQQA----Y 63
            +I DEV TG    G     E       PDI  F+K   L GG       VP        
Sbjct: 631 PVIFDEVFTGFWRLGVETTTELLG--CKPDIACFAK--LLTGGM------VPLAVTLATD 680

Query: 64  RVFNTWMGDPGKVLLLKG---------------IIDTIHNENLLDRVQKTGDIL 102
            VF+++ GD     LL G                I    +      +   G  L
Sbjct: 681 AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTL 734

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.98
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.96
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.93
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.92
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.92
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.91
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.91
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.9
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.9
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.9
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.89
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.89
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.89
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.87
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.87
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.87
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.86
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.86
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.86
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.85
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.84
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.84
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.75
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.84
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.84
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.83
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.83
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.83
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.82
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.81
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.79
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.77
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.77
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.74
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.74
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.68
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.6
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.56
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.5
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.49
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.35
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.32
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.25
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.23
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.22
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.21
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.13
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.12
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.09
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.07
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.06
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.06
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.04
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.02
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	98.98
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	98.98
3nra_A	407	Aspartate aminotransferase; structural genomics, j	98.97
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	98.97
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	98.96
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	98.95
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	98.95
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	98.95
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	98.95
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	98.94
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	98.94
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	98.94
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	98.94
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	98.94
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	98.93
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	98.93
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	98.92
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	98.92
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	98.92
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	98.92
1vp4_A	425	Aminotransferase, putative; structural genomics, j	98.91
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	98.91
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	98.91
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	98.89
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.89
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	98.88
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	98.88
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	98.88
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	98.88
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	98.88
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	98.88
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	98.39
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	98.87
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	98.86
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.85
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	98.84
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	98.84
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	98.83
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.83
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	98.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	98.83
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	98.81
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.81
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	98.8
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.8
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	98.79
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	98.78
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	98.78
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	98.77
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	98.77
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	98.76
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	98.74
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	98.73
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	98.72
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	98.72
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.7
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	98.7
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	98.69
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	98.67
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	98.66
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	98.65
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	98.65
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	98.63
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.62
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	98.62
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	98.62
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	98.59
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	98.59
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	98.59
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	98.58
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	98.58
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	98.56
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	98.56
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	98.54
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	98.53
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	98.52
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	98.52
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	98.52
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	98.51
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	98.51
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	98.5
3rq1_A	418	Aminotransferase class I and II; structural genomi	98.5
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	98.49
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	98.48
3ele_A	398	Amino transferase; RER070207001803, structural gen	98.48
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	98.44
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	98.43
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	98.43
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	98.43
2fnu_A	375	Aminotransferase; protein-product complex, structu	98.43
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	98.41
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	98.4
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	98.4
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	98.4
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	98.39
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	98.37
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	98.36
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	98.35
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	98.34
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	98.33
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	98.33
1o69_A	394	Aminotransferase; structural genomics, unknown fun	98.32
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.31
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	98.31
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	98.3
1iug_A	352	Putative aspartate aminotransferase; wild type, py	98.3
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	98.29
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	98.29
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	98.29
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	98.29
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	98.29
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	98.29
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	98.27
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	98.26
3pj0_A	359	LMO0305 protein; structural genomics, joint center	98.26
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	98.25
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	98.25
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.24
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	98.24
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	98.23
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	98.22
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	98.21
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	98.2
1svv_A	359	Threonine aldolase; structural genomics, structura	98.17
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	98.16
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	98.15
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	98.14
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	98.13
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	98.13
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	98.12
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	98.12
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	98.11
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	98.1
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	98.09
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	98.08
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	98.06
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	98.05
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	98.04
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	98.02
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	98.02
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	97.99
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	97.98
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	97.97
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	97.96
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.95
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	97.93
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	97.91
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	97.9
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	97.87
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	97.87
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	97.83
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	97.82
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	97.81
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	97.75
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	97.74
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	97.63
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	97.63
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	97.61
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	97.58
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	97.55
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	97.52
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	97.48
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	97.46
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	97.4
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	97.38
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	97.2
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	97.19
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	96.9
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	96.78
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	96.44
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	96.31
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	96.31
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	96.14
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	95.99
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	95.18
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	94.35
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	94.22
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	89.96
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	89.03

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=1.3e-33  Score=219.76  Aligned_cols=111  Identities=25%  Similarity=0.364  Sum_probs=100.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||||++|+++++|+.  |||+|+||++ +||+|++..     +.+ ..+..|++||+|||+
T Consensus       254 ~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~--PDivt~gK~l-ggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpl  330 (456)
T 4atq_A          254 EWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVV--PDIITMAKGI-AGGLPLSAITGRADLLDAVHPGGLGGTYGGNPV  330 (456)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCC--CSEEEECGGG-GTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHH
T ss_pred             HHHhhcCCceEecccccccCCccccccccccCCC--Cchhhhhhcc-cCcCCceeeEecHHHHhcccccCCCCCCCCChH
Confidence            5899999999999999999999999999999998  9999999999 688877543     222 346678999999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      +|++++++|++|+++++.++++++|++|+++|+++.+++|
T Consensus       331 a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~  370 (456)
T 4atq_A          331 ACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELS  370 (456)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999998875

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.98  E-value=1.2e-32  Score=215.22  Aligned_cols=112  Identities=20%  Similarity=0.240  Sum_probs=97.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccccc-----ccc--------cccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLKPE-----FVP--------QQAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~~~-----~~~--------~~~~~~~   66 (119)
                      ++|++||++||+|||||||||||++|+++++|+.  |||+|+||+| +|| +|++..     +.+        ..+..|+
T Consensus       264 ~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~--PDi~t~~K~l-~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg  340 (473)
T 4e3q_A          264 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFT--PDAIISSKNL-TAGFFPMGAVILGPELSKRLETAIEAIEEFPHG  340 (473)
T ss_dssp             HHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCC--CSEEEECGGG-GTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHhcccceEEeccCccccCCcccchhHHHhcCCC--CChHHhcccc-cCCCCCcccccccHHHHHHhccccccccccccC
Confidence            4899999999999999999999999999999998  9999999999 677 454332     211        1345689


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||+|||++|++++++|++++++++.++++++|++|+++|+++.+ +|.|
T Consensus       341 ~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~-~~~v  389 (473)
T 4e3q_A          341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNI  389 (473)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTT-STTE
T ss_pred             CCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhc-CCCe
Confidence            999999999999999999999999999999999999999999865 5654

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.96  E-value=8.9e-30  Score=198.24  Aligned_cols=112  Identities=13%  Similarity=0.126  Sum_probs=98.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccc-----cccc-----ccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKP-----EFVP-----QQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~-----~~~~-----~~~~~~~~T~~   70 (119)
                      ++|++||++||+|||||  ||+|.+|+++++|+.  |||+|+||+| +||++++.     ++++     ..+..|++||+
T Consensus       248 ~lc~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~--PDi~t~gK~l-ggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~  322 (454)
T 4ao9_A          248 ESATQVGALLVFDEVMT--SRLAPHGLANKLGIR--SDLTTLGKYI-GGGMSFGAFGGRADVMALFDPRTGPLAHSGTFN  322 (454)
T ss_dssp             HHHHHHTCEEEEECTTG--GGGSTTCHHHHHTCC--CSEEEEEGGG-GTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTT
T ss_pred             HHHhhcCCEEEEECCCc--CCCccccchhccCCC--CcEEEecccc-CCCCcceeeeeHHHHHHHHhhccCCccccCCCC
Confidence            58999999999999999  599999999999999  9999999999 67887643     2222     12346789999


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +||++|++++++|++++++++++++++++++|+++|+++.+++|.+.
T Consensus       323 gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~  369 (454)
T 4ao9_A          323 NNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAM  369 (454)
T ss_dssp             TCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSC
T ss_pred             CCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence            99999999999999999999999999999999999999998888653

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.93  E-value=1.8e-27  Score=196.11  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=91.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccc-----ccccc----cc---ccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLK-----PEFVP----QQ---AYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~-----~~~~~----~~---~~~~~~   67 (119)
                      ++|++||++||+|||||||||+|++|+++++|+.  |||+||||+| +||| +++     +++.+    ..   ...|++
T Consensus       623 ~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~--PDiitlsK~L-~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~  699 (831)
T 4a0g_A          623 NECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK--PDIACFAKLL-TGGMVPLAVTLATDAVFDSFSGDSKLKALLHGH  699 (831)
T ss_dssp             HHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC--CSEEEECGGG-GTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCC
T ss_pred             HHHHHcCCeEEEEcCccccccCCCchhhHhcCCC--CcEEEEeccc-ccCccCcEEEEECHHHHHHHhcccccccceeec
Confidence            4899999999999999999999999999999998  9999999999 6775 332     22221    11   234789


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH----HHHhhhhcCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLN----VRLGLGQESNLQ  116 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~----~L~~l~~~~p~i  116 (119)
                      ||++||++|++++++|++++++++.++++++++++++    .+.+..+++|.|
T Consensus       700 T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v  752 (831)
T 4a0g_A          700 SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAV  752 (831)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTE
T ss_pred             CCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            9999999999999999999988888888888877654    444444567754

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.92  E-value=1.9e-25  Score=173.71  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=94.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccc-----ccccc---ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLK-----PEFVP---QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~-----~~~~~---~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||+||||+|++|+++++++.  ||++||||+|+ || ++++     +.+.+   .....+++||++
T Consensus       251 ~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~--pdi~t~sK~l~-gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~  327 (472)
T 3hmu_A          251 RICDKYDILLIADEVICGFGRTGNWFGTQTMGIR--PHIMTIAKGLS-SGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSG  327 (472)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC--CSEEEECGGGT-TTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTT
T ss_pred             HHHHHcCCEEEEEccccCCcccCccchhHHhCCC--Cceeeechhhh-cCCcceEEEEECHHHHHhcccCCccccCCCCC
Confidence            4899999999999999999999999999999998  99999999994 54 3443     22222   123357789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHhhhhcCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQ-KTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~-~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||+++++++++|+.++++++.++++ ++++++++.|+++.+ +|.+
T Consensus       328 np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~v  372 (472)
T 3hmu_A          328 HPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTD-HPLV  372 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGG-STTE
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc-CCCe
Confidence            9999999999999998889999999 999999999988753 6643

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.92  E-value=3e-25  Score=172.58  Aligned_cols=112  Identities=24%  Similarity=0.380  Sum_probs=94.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhh-hcCCCCCCCEEEEchhhccCcc-ccc-----cccccc-cc-------cce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHE-HFDLEESPDIVTFSKKMQLGGY-FLK-----PEFVPQ-QA-------YRV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~-~~g~~~~pDi~t~gK~lg~gG~-~~~-----~~~~~~-~~-------~~~   65 (119)
                      ++|++||++||+||||+||||+|++|+++ ++++.  ||++||||++ +||| +++     +.+.+. .+       ..+
T Consensus       249 ~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~--pdi~t~sK~l-~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~  325 (476)
T 3i5t_A          249 AICEKHDILYISDEVVTGFGRCGEWFASEKVFGVV--PDIITFAKGV-TSGYVPLGGLAISEAVLARISGENAKGSWFTN  325 (476)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCC--CSEEEECGGG-GTTSSCCEEEEECHHHHHTTSGGGCTTCEECC
T ss_pred             HHHHHcCCEEEEEecccCCccccCceeeecccCCC--cchhhhhhhh-cCCCcCeEEEEECHHHHHHHhcCCcccccccc
Confidence            48999999999999999999999988888 99998  9999999999 5673 332     223221 11       256


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      .+||++||++|++++++|+.++++++.++++++++++++.|+++. ++|.+
T Consensus       326 ~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v  375 (476)
T 3i5t_A          326 GYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGV  375 (476)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTE
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCe
Confidence            789999999999999999999888999999999999999999764 56643

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.91  E-value=5.4e-24  Score=165.36  Aligned_cols=114  Identities=50%  Similarity=0.920  Sum_probs=99.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchh-hccCccccccccccccccceeeccCCCHHHHHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKK-MQLGGYFLKPEFVPQQAYRVFNTWMGDPGKVLLL   79 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~-lg~gG~~~~~~~~~~~~~~~~~T~~~~p~~~a~a   79 (119)
                      ++|++||++||+||||+||||+|.+++++++|+...||++||||+ + +||+++.+.+....+..+++||++||++++++
T Consensus       286 ~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l-~GG~~~~~~~~~~~~~~~~~T~~~~~~~~aaa  364 (472)
T 1ohv_A          286 DISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMM-TGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLL  364 (472)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGS-SEEEEECGGGSCSSSSSSCCSSSSCHHHHHHH
T ss_pred             HHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccc-cCCccCchhhcccccccccCccCccHHHHHHH
Confidence            489999999999999999999999888898887434999999999 7 57888755564334566789999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          80 KGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        80 ~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +++|+.++++++.+++++++++|+++|+++..++|.
T Consensus       365 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (472)
T 1ohv_A          365 AEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQ  400 (472)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999988889999999999999999998766774

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.91  E-value=3e-24  Score=166.22  Aligned_cols=112  Identities=20%  Similarity=0.243  Sum_probs=94.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccc-----cccccc----c--ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLK-----PEFVPQ----Q--AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~-----~~~~~~----~--~~~~~~T   68 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||+| +||+ +++     +++.+.    .  ...+++|
T Consensus       262 ~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~--pdiit~sK~l-~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t  338 (457)
T 3tfu_A          262 DICRRYEVLLIFDEIATGFGRTGALFAADHAGVS--PDIMCVGKAL-TGGYLSLAATLCTADVAHTISAGAAGALMHGPT  338 (457)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC--CSEEEECGGG-GTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred             HHHHHcCCEEEEEcCccCCccccchhHhHhcCCC--ceEEEEChhh-hCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence            4899999999999999999999999999999998  9999999999 6775 332     222211    1  2367899


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++||++|++++++|+.++++++.+++++++++++++|+++. ++|.+
T Consensus       339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v  385 (457)
T 3tfu_A          339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAV  385 (457)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTE
T ss_pred             CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCe
Confidence            999999999999999999888999999999999999999876 46643

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.90  E-value=8.9e-24  Score=162.14  Aligned_cols=113  Identities=31%  Similarity=0.441  Sum_probs=95.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccc-----cccccc-------cccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLK-----PEFVPQ-------QAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~-----~~~~~~-------~~~~~~~   67 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||+++ +| ++++     +.+.+.       ....+++
T Consensus       243 ~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~--~di~t~sK~l~-~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~  319 (452)
T 3n5m_A          243 ETCQKHGALLISDEVICGFGRTGKAFGFMNYDVK--PDIITMAKGIT-SAYLPLSATAVKREIYEAFKGKGEYEFFRHIN  319 (452)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCC--CSEEEECGGGG-TTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCC
T ss_pred             HHHHHcCCEEEEecchhCCCcccccchhhhcCCC--CCEEeeccccc-CCCcceEEEEECHHHHHHHhhccCCCCccccC
Confidence            4899999999999999999999999899999998  99999999995 56 3332     223221       2234678


Q ss_pred             ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||++||+++++++++|+.++++++.++++++++++++.|+++.+++|.+
T Consensus       320 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  368 (452)
T 3n5m_A          320 TFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLV  368 (452)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            9999999999999999999888999999999999999999987777743

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.90  E-value=1.5e-23  Score=161.63  Aligned_cols=113  Identities=20%  Similarity=0.204  Sum_probs=95.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccc-----cccccc--------ccccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLK-----PEFVPQ--------QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~-----~~~~~~--------~~~~~~   66 (119)
                      ++|++||++||+||||+||||+|++++++++++.  ||++||||+| +||+ +++     +.+.+.        ....+.
T Consensus       249 ~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~--pdi~t~sK~l-~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~  325 (460)
T 3gju_A          249 AVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIK--PDLITIAKGL-TSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHG  325 (460)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC--CSEEEECGGG-TTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCC
T ss_pred             HHHHHcCCEEEEeccccCCCcccccchHhhcCCC--CCeeeeehhh-cCCCCCeEEEEECHHHHHHHhcccccccccccC
Confidence            4899999999999999999999998889999998  9999999999 5663 332     222221        233567


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      +||++||+++++++++|+.++++++.+++++++++++++|++..+++|.+
T Consensus       326 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  375 (460)
T 3gju_A          326 WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNV  375 (460)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            89999999999999999999888999999999999999998887777753

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.90  E-value=2.6e-23  Score=160.22  Aligned_cols=113  Identities=26%  Similarity=0.357  Sum_probs=97.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----ccccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||++ ++|++++     +.+.+ ..+..+.+||++||+
T Consensus       255 ~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~--pdi~t~sK~l-~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~  331 (451)
T 3oks_A          255 DWCRKNDVVFIADEVQTGFARTGAMFACEHEGID--PDLIVTAKGI-AGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPI  331 (451)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGG-GTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHH
T ss_pred             HHHHHcCCEEEEEecccCCCccccchhhhhcCCC--CCeeeehhhh-hCCcceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence            4899999999999999999999999999999998  9999999999 4566543     22333 234457889999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++++++++|+.++++++.++++++++++++.|+++.+++|.+
T Consensus       332 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  373 (451)
T 3oks_A          332 ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRI  373 (451)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            999999999999888999999999999999999998778753

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.89  E-value=2.9e-23  Score=160.15  Aligned_cols=113  Identities=25%  Similarity=0.351  Sum_probs=97.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----ccccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||+++ +|++++     +.+.+ ..+..+.+||++||+
T Consensus       253 ~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~--pdi~t~sK~~~-~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~  329 (453)
T 4ffc_A          253 AWASENGVVFIADEVQTGFARTGAWFASEHEGIV--PDIVTMAKGIA-GGMPLSAVTGRAELMDAVYAGGLGGTYGGNPV  329 (453)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC--CSEEEECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHH
T ss_pred             HHHHHcCCEEEEecCccCCCcccccchhhhcCCC--cchHhhhhhhc-CCcCeEEEEECHHHHhhhcccCcCCCCCcCHH
Confidence            4899999999999999999999999999999998  99999999994 565543     22332 233457889999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++++++++|+.++++++.++++++++++++.|+++.+++|.+
T Consensus       330 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  371 (453)
T 4ffc_A          330 TCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDII  371 (453)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            999999999999888999999999999999999998778753

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.89  E-value=1.4e-23  Score=161.86  Aligned_cols=111  Identities=20%  Similarity=0.320  Sum_probs=92.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccc-----cccccc----cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLK-----PEFVPQ----QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~-----~~~~~~----~~~~~~~T~~   70 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||+|+ || ++++     +.+.+.    ....+.+||+
T Consensus       247 ~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~--pdi~t~sK~l~-gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~  323 (459)
T 4a6r_A          247 RICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQ--PDLFTAAKGLS-SGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYS  323 (459)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC--CSEEEECGGGG-TTSSCCEEEEECHHHHHHHHHHCTTHHHHHHC
T ss_pred             HHHHHcCCEEEEeccccCCCcccccchHhhcCCC--CCeeehhhhhc-CCCCCccceeeCHHHHHHhhcCCCcccCCCCC
Confidence            4899999999999999999999998889999998  99999999994 44 3432     223221    1345678999


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHH-HhhhhcCCC
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQ-KTGDILLNVR-LGLGQESNL  115 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~-~~g~~l~~~L-~~l~~~~p~  115 (119)
                      +||+++++++++|+.++++++.++++ ++++++++.| +.+ +++|.
T Consensus       324 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~  369 (459)
T 4a6r_A          324 GHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETF-SRFEH  369 (459)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHH-TTCTT
T ss_pred             CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence            99999999999999998889999999 9999999999 555 45664

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.89  E-value=8.1e-23  Score=156.98  Aligned_cols=111  Identities=19%  Similarity=0.275  Sum_probs=93.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccc-----cccccc-cc-------ccee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLK-----PEFVPQ-QA-------YRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~-----~~~~~~-~~-------~~~~   66 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||++ ++|+ +++     +.+.+. ..       ..+.
T Consensus       239 ~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~--~di~t~sK~l-~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~  315 (448)
T 3dod_A          239 ELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQ--PDLMAAGKGI-TGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG  315 (448)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGG-GTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCC
T ss_pred             HHHHHhCCEEEEeccccCCCcccchhhhhhcCCC--CCEEEecccc-cCCcCceEEEEECHHHHHHhhhccccCCccccc
Confidence            4899999999999999999999999899999998  9999999999 5675 432     223221 11       4467


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +||++||+++++++++|+.++++++.++++++++++++.|++ ..++|.
T Consensus       316 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~  363 (448)
T 3dod_A          316 HSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPH  363 (448)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTT
T ss_pred             CCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            899999999999999999998889999999999999999998 556664

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.87  E-value=4.6e-22  Score=152.61  Aligned_cols=112  Identities=25%  Similarity=0.398  Sum_probs=94.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccc-----cccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLK-----PEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~-----~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||+++ +| ++.+     +.+.+. .+..+.+||++||
T Consensus       240 ~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~--~di~t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~  316 (433)
T 1z7d_A          240 DICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKALS-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNP  316 (433)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGGG-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCH
T ss_pred             HHHHHcCCEEEEecCccCCCcCCcchhhHhcCCC--CCEEEECcccc-CCCCCeEEEEECHHHHhhhccccccccCCCCH
Confidence            4899999999999999999999998888889987  99999999995 66 3332     233322 2334678999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ++++++.++|+.++++++.+++++++++++++|+++.+++|.
T Consensus       317 ~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~  358 (433)
T 1z7d_A          317 LAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKI  358 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999988889999999999999999998666664

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.87  E-value=5.1e-22  Score=152.96  Aligned_cols=113  Identities=28%  Similarity=0.424  Sum_probs=96.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccccc------cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQ------QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~~~------~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||++||||++..|+++..+.+.+.      .+..+.+||++||+
T Consensus       259 ~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~--~di~t~sK~l~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~  336 (449)
T 2cjg_A          259 ELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVA--PDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLT  336 (449)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCC--CSEEEECGGGSSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHH
T ss_pred             HHHHHCCcEEEEeccccCCCccCcceeecccCCC--ceEEEecCcccEEEEEECHHHhhhhhhcccCCcccccCCCCCHH
Confidence            4899999999999999999999998888889987  999999999854555545555442      23456789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +++++.++|+.++++++.+++++++++++++|+++..++|.
T Consensus       337 ~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~  377 (449)
T 2cjg_A          337 DMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPA  377 (449)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999988889999999999999999998766775

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.87  E-value=1e-21  Score=149.69  Aligned_cols=112  Identities=19%  Similarity=0.241  Sum_probs=94.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc----cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ----QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~----~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||+|| |+|.+++++++++.  ||++||||+++ +|++++     +.+.+.    .+..+++||++
T Consensus       230 ~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~--~di~t~sK~~~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~  305 (434)
T 3l44_A          230 ELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVT--PDLTALGKVIG-GGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAG  305 (434)
T ss_dssp             HHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCC--CSEEEEEGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHcCCEEEEeccccce-eccccHHHHHcCCC--CCeeehhhhhc-CCcCeeeEEEcHHHHHhhccCCCcccCCCCCc
Confidence            4899999999999999999 99998889999998  99999999994 666543     223221    22457889999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||+++++++++|+.++++++.++++++++++++.|+++..+++.+
T Consensus       306 ~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  350 (434)
T 3l44_A          306 NPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNID  350 (434)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999888899999999999999999987666643

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.86  E-value=1.6e-21  Score=148.56  Aligned_cols=112  Identities=20%  Similarity=0.214  Sum_probs=93.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc----cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ----QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~----~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||+|| |+|.+++.+++++.  ||++||||+++ +|++.+     +.+.+.    ....+++||++
T Consensus       228 ~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~--pdi~t~sK~~~-~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~  303 (429)
T 4e77_A          228 ALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVI--PDLTCLGKIIG-GGMPVGAFGGRREVMNALAPTGPVYQAGTLSG  303 (429)
T ss_dssp             HHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCC--CSEEEEEGGGG-TTSCCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred             HHHHHcCCEEEEeccccCc-ccCcchHHHhcCCC--CCeeeeccccc-CCCCeEEEEECHHHHHHhccCCCccccCCCCC
Confidence            4899999999999999999 99998889999998  99999999995 665543     222221    22357889999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||+++++++++|+.++++++.++++++++++++.|+++..+++.+
T Consensus       304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  348 (429)
T 4e77_A          304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIP  348 (429)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999888999999999999999999987766654

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.86  E-value=6.1e-22  Score=150.79  Aligned_cols=113  Identities=24%  Similarity=0.328  Sum_probs=94.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhc-CCCCCCCEEEEchhhccCc-----cccc-ccccccc-----ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHF-DLEESPDIVTFSKKMQLGG-----YFLK-PEFVPQQ-----AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~-g~~~~pDi~t~gK~lg~gG-----~~~~-~~~~~~~-----~~~~~~T   68 (119)
                      ++|++||++||+||||+||||+|.+++++++ ++.  ||++||||+++ +|     +++. +.+.+..     +..+.+|
T Consensus       219 ~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~--~di~t~sK~l~-~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t  295 (430)
T 3i4j_A          219 DICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVT--PDIAVLGKGLA-AGYAPLAGLLAAPQVYETVMGGSGAFMHGFT  295 (430)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCC--CSEEEECGGGT-TTSSCCEEEEECHHHHHHHHHTTCBCCCCCT
T ss_pred             HHHHHcCCEEEEechhhCCCcccchhhhhhhcCCC--CcEEEEccccc-CCccccEEEEECHHHHHHHhccCCcccccCC
Confidence            4799999999999999999999998888999 988  99999999995 56     3222 2232211     1256789


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++||+++++++++|+.++++++.++++++.+++++.|+++.+++|.+
T Consensus       296 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  343 (430)
T 3i4j_A          296 YAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQM  343 (430)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             CCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            999999999999999999888899999999999999999988777743

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.86  E-value=1.6e-21  Score=149.98  Aligned_cols=106  Identities=25%  Similarity=0.376  Sum_probs=90.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccc-----cccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLK-----PEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~-----~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+||||+||||+|++++++++++.  ||++||||+++ || ++.+     +.+.+. .+..+.+||++||
T Consensus       251 ~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~--~Di~t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~  327 (439)
T 2oat_A          251 ELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKALS-GGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNP  327 (439)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGGG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCH
T ss_pred             HHHHHcCCEEEEeccccCCccCCcchhHHHhCCC--CcEEEeccccc-CCCCCeEEEEECHHHHhccCCCCcccCCCcCH
Confidence            4899999999999999999999998888999987  99999999994 56 3332     223322 2334678999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++.++|+.++++++.++++++++++++.|+++
T Consensus       328 ~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  363 (439)
T 2oat_A          328 LGCRVAIAALEVLEEENLAENADKLGIILRNELMKL  363 (439)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988889999999999999999887

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.85  E-value=6.1e-21  Score=145.54  Aligned_cols=111  Identities=19%  Similarity=0.237  Sum_probs=92.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc----cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ----QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~----~~~~~~~T~~~   71 (119)
                      ++|++||++||+||+|+|| |+|.+++++++++.  ||++||||+++ +|++.+     +.+.+.    .+..+++||++
T Consensus       231 ~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~--~di~s~sK~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~  306 (434)
T 2epj_A          231 RLSRESGALLILDEVVTGF-RLGLEGAQGYFNIE--GDIIVLGKIIG-GGFPVGAVAGSREVMSLLTPQGKVFNAGTFNA  306 (434)
T ss_dssp             HHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCC--CSEEEEEGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHcCCEEEEEcchhce-eCCcchhhHHhCCC--CCeeeecchhc-CCcceeeeeecHHHHHhhccCCCcccCCCCCc
Confidence            4899999999999999999 88988888889987  99999999995 565542     223221    12346789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ||++++++.++|+.++++++.++++++++++++.|+++..+++.
T Consensus       307 ~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  350 (434)
T 2epj_A          307 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGL  350 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999988889999999999999999988655543

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.84  E-value=1.3e-20  Score=143.34  Aligned_cols=111  Identities=21%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----ccccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~----~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||+|| |+|..+..+++++.  ||++||||+++ +|++++     +.+.+    .....+.+||++
T Consensus       227 ~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~--~di~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~  302 (427)
T 3fq8_A          227 EITLEHDALLVFDEVITGF-RIAYGGVQEKFGVT--PDLTTLGKIIG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSG  302 (427)
T ss_dssp             HHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCC--CSEEEECGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHcCCEEEEecccccc-ccCcchhhHhcCCC--CChhhhhhhhh-CCcceEEEEEcHHHHHhhccCCCccccCCCCc
Confidence            4899999999999999999 99998888999998  99999999995 565442     22222    122357789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ||++++++.++|+.++++++.++++++++++++.|+++..+++.
T Consensus       303 ~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  346 (427)
T 3fq8_A          303 NPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGH  346 (427)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999988889999999999999999998766554

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.84  E-value=7e-21  Score=145.18  Aligned_cols=111  Identities=15%  Similarity=0.185  Sum_probs=93.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----ccccc----ccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVP----QQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~----~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||+|| |+|.+++++++++.  ||++||||+++ +|++++     +.+.+    ..+..+++||++
T Consensus       228 ~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~--~di~t~sK~~~-~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~  303 (429)
T 3k28_A          228 EVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVT--PDLTCLGKVIG-GGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSG  303 (429)
T ss_dssp             HHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCC--CSEEEECGGGG-TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHcCCEEEEecccccc-ccCcchHHHHhCCC--Cceehhhhhhc-CCCCeEEEEEcHHHHhhhccCCCccccCCCCC
Confidence            4899999999999999999 99998889999998  99999999994 565543     22322    123357789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||+++++++++|+.++ +++.++++++++++++.|+++..++|.+
T Consensus       304 ~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~  347 (429)
T 3k28_A          304 NPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIP  347 (429)
T ss_dssp             CHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            9999999999999887 7889999999999999999987777654

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.75  E-value=9.6e-23  Score=158.98  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=94.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cc-----cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QA-----YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~-----~~~~~T~   69 (119)
                      ++|++||++||+||||+ | |+|.+++++++++.  ||++||||++| +|++++     +.+++. .+     ..+++||
T Consensus       261 ~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~--pDi~t~sK~lg-~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~  335 (465)
T 2yky_A          261 AEASRCGALLIFDEVMT-S-RLSGGGAQEMLGIS--ADLTTLGKYIG-GGMSFGAFGGRRDLMERFDPARDGAFAHAGTF  335 (465)
Confidence            58999999999999999 6 99999999999998  99999999995 565442     333332 12     2577899


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++||+++++++++|++++++++++++++++++|+++|+++.+++|.+
T Consensus       336 ~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  382 (465)
T 2yky_A          336 NNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAP  382 (465)
Confidence            99999999999999999988999999999999999999998777653

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.84  E-value=1.3e-20  Score=141.69  Aligned_cols=112  Identities=25%  Similarity=0.299  Sum_probs=94.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----ccc-cc-ccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEF-VP-QQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~-~~-~~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+||||+||||+|.++.++++++.  ||++||||+++ +|+.++     +.+ .+ ..+..+.+||++||
T Consensus       207 ~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~--~d~~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (395)
T 3nx3_A          207 KLCDEKDILLIADEIQCGMGRSGKFFAYEHAQIL--PDIMTSAKALG-CGLSVGAFVINQKVASNSLEAGDHGSTYGGNP  283 (395)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGGT-TTSCCEEEEECHHHHHHHSCTTCCSSCBSCCH
T ss_pred             HHHHHcCCEEEEEecccCCCcCCcchhHHhcCCC--CCEEEeccccc-CCCceEEEEEchhhhhhhcCCcccCCCCCCCH
Confidence            4799999999999999999999998888999988  99999999994 555332     233 33 23345678999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ++++++.++|+.++++++.++++++.+++++.|+++..++|.
T Consensus       284 ~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (395)
T 3nx3_A          284 LVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDF  325 (395)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999988889999999999999999998777764

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.84  E-value=1.4e-20  Score=143.50  Aligned_cols=111  Identities=25%  Similarity=0.414  Sum_probs=93.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||+|+||||+|.++..+++++.  ||+++|||+++ +|+.++     +.+.+. .+..+.+|| +||+
T Consensus       229 ~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~--~di~s~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~  304 (439)
T 3dxv_A          229 DICRAHGILVVCDEVKVGLARSGRLHCFEHEGFV--PDILVLGKGLG-GGLPLSAVIAPAEILDCASAFAMQTLH-GNPI  304 (439)
T ss_dssp             HHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCC--CSEEEECGGGG-TTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHH
T ss_pred             HHHHHcCCEEEEeccccCCCcCchhhHHHhcCCC--CCEEEEcchhc-CCcceEEEEECHHHHhhhcCCCcCCCc-ccHH
Confidence            4899999999999999999999998888999988  99999999995 565332     223322 233567899 9999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ++++++++|+.++++++.++++++.+++++.|+++..++|.
T Consensus       305 ~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  345 (439)
T 3dxv_A          305 SAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPL  345 (439)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999988889999999999999999998777764

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.83  E-value=2.9e-20  Score=141.39  Aligned_cols=111  Identities=23%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc----cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ----QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~----~~~~~~~T~~~   71 (119)
                      ++ ++||++||+||+|+|| |+|.+++++++++.  ||++||||+++ +|++.+     +.+.+.    ....+++||++
T Consensus       227 ~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~--~di~s~sK~l~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~  301 (424)
T 2e7u_A          227 EA-KAYGVLLIADEVMTGF-RLAFGGATELLGLK--PDLVTLGKILG-GGLPAAAYAGRREIMEKVAPLGPVYQAGTLSG  301 (424)
T ss_dssp             HG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCC--CSEEEECGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTCS
T ss_pred             HH-HHcCCEEEEecCcccc-ccchhHHHHHhCCC--cchhhhhhhhh-CCcceEEEEEcHHHHhhhcccCCcccCCCCCC
Confidence            46 8999999999999999 88988888889988  99999999995 565543     223221    22346789999


Q ss_pred             CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ||++++++.++|+.+++ +++.+++++++++++++|+++.+++|.+
T Consensus       302 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  347 (424)
T 2e7u_A          302 NPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLP  347 (424)
T ss_dssp             CHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999988 8899999999999999999987666653

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.83  E-value=1.1e-20  Score=143.80  Aligned_cols=112  Identities=26%  Similarity=0.382  Sum_probs=91.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc---cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ---QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~---~~~~~~~T~~~~   72 (119)
                      ++|++||++||+||||+||||+|.+++++++++.  ||+++|||+++ +|+.++     +.+.+.   ....+.+|+++|
T Consensus       231 ~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~--~di~s~sK~~~-~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~  307 (433)
T 1zod_A          231 RKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT--PDILTLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSD  307 (433)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC--CSEEEECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTC
T ss_pred             HHHHHhCCEEEEeccccCCCcCchHhHHhhcCCC--CCEEEeccccc-CCCCeeEEEEhHHHHHhhccCCCCCCCCCCcC
Confidence            4799999999999999999999988888888987  99999999995 454332     223221   112344899999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      |++++++.++|+.++++++.+++++++++++++|+++..++|.
T Consensus       308 ~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  350 (433)
T 1zod_A          308 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDC  350 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999988889999999999999999988666664

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.83  E-value=2e-20  Score=142.75  Aligned_cols=112  Identities=21%  Similarity=0.367  Sum_probs=90.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||+|+||||+|++++++.+++.  ||++||+|+++ +|++.+     +.+.+. .+..+.+||++||+
T Consensus       229 ~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~--~diit~sK~l~-~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~  305 (420)
T 2pb2_A          229 DLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVT--PDILTSAKALG-GGFPVSAMLTTQEIASAFHVGSHGSTYGGNPL  305 (420)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC--CSEEEECGGGG-TTSCCEEEEECHHHHTTCC----CCEECCCHH
T ss_pred             HHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCC--CCeEEeccccc-CCCceEEEEEhHHHHHhhcCCCcCcccCcCHH
Confidence            4799999999999999999999998878888987  99999999995 665432     233322 22346789999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +++++.++|+.++++++.++++++++++++.|+++..++|.
T Consensus       306 ~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  346 (420)
T 2pb2_A          306 ACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDI  346 (420)
T ss_dssp             HHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999988889999999999999999987544553

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.82  E-value=7.1e-20  Score=140.45  Aligned_cols=110  Identities=19%  Similarity=0.277  Sum_probs=86.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----cccccc-cc-----cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVPQ-QA-----YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~~-~~-----~~~~~T~   69 (119)
                      ++|++||++||+||+|+|| |+|.+++++++++.  ||+++|||+++ +|++.+     +.+.+. .+     ..+++||
T Consensus       229 ~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~--~di~s~sK~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~  304 (453)
T 2cy8_A          229 ELARQYGALFILDEVISGF-RVGNHGMQALLDVQ--PDLTCLAKASA-GGLPGGILGGREDVMGVLSRGSDRKVLHQGTF  304 (453)
T ss_dssp             HHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCC--CSEEEEEGGGG-TTSSCEEEEECHHHHTTSSSCC---------C
T ss_pred             HHHHHcCCEEEEecCcccc-ccCchhhhHHhCCC--CcEEEEChhhh-CCcceEEEechHHHHHHhccccCCCceeCCCC
Confidence            4899999999999999999 89988888889987  99999999994 555432     223221 11     2467899


Q ss_pred             CCCHHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          70 MGDPGKVLLLKGIIDT-IHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~-i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ++||++++++.++|+. + ++++.+++++++++++++|+++..++|.
T Consensus       305 ~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~  350 (453)
T 2cy8_A          305 TGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGL  350 (453)
T ss_dssp             CCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999998 8 7789999999999999999988655654

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.81  E-value=1.2e-19  Score=138.96  Aligned_cols=111  Identities=20%  Similarity=0.285  Sum_probs=89.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-cccc-----cccccc-c---------ccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFLK-----PEFVPQ-Q---------AYR   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~~-----~~~~~~-~---------~~~   64 (119)
                      ++|++||++||+||||+||||+|.++.++++++.  ||+++|||+++ +| ++.+     +.+.+. .         ...
T Consensus       247 ~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~--~di~s~sK~l~-~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~  323 (449)
T 3a8u_X          247 EICNQHNILLVFDEVITGFGRTGSMFGADSFGVT--PDLMCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFP  323 (449)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC--CSEEEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSC
T ss_pred             HHHHHhCCEEEEeccccCccccCcchhhhhcCCC--CCEEEEccccc-CCCCceEEEEECHHHHHHhhccCccccccccc
Confidence            4899999999999999999999988788888987  99999999995 56 3332     222211 1         114


Q ss_pred             eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          65 VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        65 ~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +.+||.+||++++++.++|+.++++++.+++++++++++++|+++ .++|.
T Consensus       324 ~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~  373 (449)
T 3a8u_X          324 HGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGI-KGAKN  373 (449)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTT
T ss_pred             ccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence            567999999999999999999988889999999999999999884 33553

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.79  E-value=2.4e-19  Score=136.35  Aligned_cols=111  Identities=23%  Similarity=0.323  Sum_probs=88.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-ccc----c-cccccc-c----cc-ceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-YFL----K-PEFVPQ-Q----AY-RVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-~~~----~-~~~~~~-~----~~-~~~~T   68 (119)
                      ++|++||++||+||+|+||||+|..+.++++++.  ||++||||+++ || +.+    . +.+.+. .    .. .+.+|
T Consensus       233 ~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~--~d~~t~sK~l~-~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t  309 (429)
T 1s0a_A          233 KICDREGILLIADEIATGFGRTGKLFACEHAEIA--PDILCLGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPT  309 (429)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGGG-TSSSCCEEEEECHHHHHHHHTSTTSSCSCCCT
T ss_pred             HHHHHcCCEEEEeehhhCCcccchHHHhhhcCCC--CCEEEeccccc-CCCccceEEEeCHHHHHHhhcCCCcccccCCC
Confidence            4799999999999999999999987777888887  99999999995 55 332    2 222221 1    11 25578


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      +++||++++++.++|+.++++++.++++++.++++++|+++.. +|.
T Consensus       310 ~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~  355 (429)
T 1s0a_A          310 FMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AEM  355 (429)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CTT
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            9999999999999999998878889999999999999988643 554

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.77  E-value=1.5e-18  Score=132.13  Aligned_cols=103  Identities=30%  Similarity=0.441  Sum_probs=81.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-----ccc-ccccccccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-----YFL-KPEFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-----~~~-~~~~~~~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+||||+||||+|..++.+++++.  ||++||||+++ +|     ++. .+.+. .....+.+||++||+
T Consensus       240 ~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~--~d~~t~sK~~~-~G~~riG~~~~~~~~~-~~~~~~~~t~~~n~~  315 (419)
T 2eo5_A          240 KLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTV--PDVITLAKALG-GGIMPIGATIFRKDLD-FKPGMHSNTFGGNAL  315 (419)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGGG-TTTSCCEEEEEEGGGC-CC------CCCCCHH
T ss_pred             HHHHHcCCEEEEeccccCCccCcchhhHHhcCCC--CCEEEeccccc-CCccceEEEEEchHhh-cCCcccCCCCCCCHH
Confidence            4799999999999999999999987777888887  99999999995 45     332 23333 222356679999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++++.++|+.+++  +.++++++.++|++.|+++
T Consensus       316 ~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          316 ACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL  348 (419)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            99999999998865  8889999999999999775

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.77  E-value=2.7e-18  Score=129.82  Aligned_cols=113  Identities=25%  Similarity=0.399  Sum_probs=91.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccC---ccccc-cccccc-cccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~~~p~~   75 (119)
                      ++|++||+++|+||+|+|||++|.++..+.+++.  ||+++|||+++.|   |++.. +.+.+. ....+.+|++.||++
T Consensus       227 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~  304 (426)
T 1sff_A          227 ALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA--PDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIA  304 (426)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSC--CSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHH
T ss_pred             HHHHHcCCEEEEechhhccCcccchhhhhhcCCC--CCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHH
Confidence            4799999999999999999999987777778877  9999999999643   33332 233322 222456788999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNL  115 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~  115 (119)
                      ++++.++|+.++++++.++++++.++++++|+++...+|.
T Consensus       305 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  344 (426)
T 1sff_A          305 CVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPE  344 (426)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999988889999999999999999987655653

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.74  E-value=8.6e-18  Score=126.02  Aligned_cols=106  Identities=21%  Similarity=0.307  Sum_probs=88.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCc-----cccc-ccccc-ccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGG-----YFLK-PEFVP-QQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG-----~~~~-~~~~~-~~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||+|+|||++|.++..+.+++.  ||++||||+|+ ||     ++.. +.+.+ ..+..+.+||+.||
T Consensus       210 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~d~~~~SK~l~-gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  286 (392)
T 3ruy_A          210 EVCKKENVLFVADEIQTGLGRTGKVFACDWDNVT--PDMYILGKALG-GGVFPISCAAANRDILGVFEPGSHGSTFGGNP  286 (392)
T ss_dssp             HHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGGG-TTTSCCEEEEECHHHHTTCCTTSSCCSSTTCH
T ss_pred             HHHHHcCCEEEEeechhCCCccccchhhhccCCC--CCEEEEchhhh-CChhhhEEEEECHHHHhhhccCCcCCCCCCCH
Confidence            4799999999999999999999998888888887  99999999994 44     3332 22332 22345667889999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++.++|+.++++++.++++++.+++++.|+++
T Consensus       287 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (392)
T 3ruy_A          287 LACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI  322 (392)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            999999999999987889999999999999999876

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.74  E-value=6.2e-18  Score=126.99  Aligned_cols=110  Identities=23%  Similarity=0.376  Sum_probs=90.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----ccccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||+|+|||++|..+..+.+++.  ||++||+|+++ +|+..+     +.+.+ ..+..+.+|+++||+
T Consensus       211 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~d~~t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (406)
T 4adb_A          211 ELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVT--PDLLTTAKALG-GGFPVGALLATEECARVMTVGTHGTTYGGNPL  287 (406)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC--CSEEEECGGGG-TTSCCEEEEECHHHHHTCCTTSSCCSSTTCHH
T ss_pred             HHHHHcCCEEEEeccccCCCccchhHHHHhcCCC--CCEEEechhhc-CCCCeEEEEEcHHHHhhhccCCcCCCCCCCHH
Confidence            4799999999999999999999998888888988  99999999996 553332     22332 223346778899999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQES  113 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~  113 (119)
                      +++++.++|+.++++++.++++++.+++++.|+++...+
T Consensus       288 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  326 (406)
T 4adb_A          288 ASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRY  326 (406)
T ss_dssp             HHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999878889999999999999999875444

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.68  E-value=3.1e-16  Score=117.88  Aligned_cols=111  Identities=23%  Similarity=0.330  Sum_probs=88.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccc-----ccccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----KPEFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~-----~~~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||+++|+||+|+|+++.|..+..+.+++.  ||+++|+|+++ +|+..     .+.+.......+..|+..||++
T Consensus       211 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~d~~s~sK~~~-~G~r~G~~~~~~~~~~l~~~~~~~~~~~~~~~  287 (397)
T 2ord_A          211 KLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVV--PDVLTTAKGLG-GGVPIGAVIVNERANVLEPGDHGTTFGGNPLA  287 (397)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC--CSEEEECGGGG-TTSCCEEEEECSTTCCCCTTSSCCSSTTCHHH
T ss_pred             HHHHHcCCEEEEEecccCCccCccchhhhhhCCC--CCeeeeccccC-CCcCeEEEEEchHhcccCCCCcCCCCCCCHHH
Confidence            4799999999999999999999887666777876  99999999995 54432     2333311222456788999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          76 VLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        76 ~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      ++++.++|+.++++++.++++++.+++++.|+++...+|
T Consensus       288 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  326 (397)
T 2ord_A          288 CRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD  326 (397)
T ss_dssp             HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999998778899999999999999988743444

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.60  E-value=3.8e-15  Score=111.71  Aligned_cols=107  Identities=27%  Similarity=0.399  Sum_probs=84.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccc-----ccccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----KPEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~-----~~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||+|+|||+.|..+..+..++.  ||+++|+|+++ +|+..     .+.+.+. ....+.+|+..||+
T Consensus       213 ~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~--~d~~s~sK~~~-~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~  289 (395)
T 1vef_A          213 EITQEKGALLILDEIQTGMGRTGKRFAFEHFGIV--PDILTLAKALG-GGVPLGVAVMREEVARSMPKGGHGTTFGGNPL  289 (395)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC--CSEEEECGGGG-TTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHH
T ss_pred             HHHHHcCCEEEEEecccCCccCCchhHhhhcCCC--CCEEEEccccc-CCCceEEEEehHHHHhhhccCCcCCCcCCCHH
Confidence            4799999999999999999998887666777877  99999999995 34322     2233222 12235678889999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      +++++.++|+.++++++.++++++.+++++.|+++.
T Consensus       290 ~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~  325 (395)
T 1vef_A          290 AMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP  325 (395)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998877788999999999999998763

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.56  E-value=2e-14  Score=106.80  Aligned_cols=104  Identities=30%  Similarity=0.450  Sum_probs=81.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccc----c-ccccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYF----L-KPEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~----~-~~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||+|++||+.+..+..+.++..  ||+++|||.++ +|+.    . .+.+.+. .+..+..|++.+|+
T Consensus       200 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~d~~s~SK~~~-~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (375)
T 2eh6_A          200 EICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLK--PDVIALAKGLG-GGVPIGAILAREEVAQSFTPGSHGSTFGGNPL  276 (375)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGGG-TTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHH
T ss_pred             HHHHHhCCEEEEeccccCCCCCCcchhhhhcCCC--CCEEEEccccc-CCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHH
Confidence            4799999999999999999988876566677766  99999999995 4432    2 2233322 22235667888999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++++.++|+.++  +..++++++.+++++.|+++
T Consensus       277 ~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  309 (375)
T 2eh6_A          277 ACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKEL  309 (375)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999876  67788999999999999875

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.50  E-value=7.4e-14  Score=106.34  Aligned_cols=107  Identities=24%  Similarity=0.266  Sum_probs=80.2

Q ss_pred             ChhhhhCCEEEEcccccc--ccCCCcchhhhhcCCCCCCC--EEEEchhhc-cCcccccc-ccccc----cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTG--GGPCGKFWCHEHFDLEESPD--IVTFSKKMQ-LGGYFLKP-EFVPQ----QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG--~Gr~G~~~~~~~~g~~~~pD--i~t~gK~lg-~gG~~~~~-~~~~~----~~~~~~~T~~   70 (119)
                      ++|++||++||+||+|++  ++++|.+ ..+++++...+|  +.+|+|++| .||++..+ .+.+.    .+.+.+ |++
T Consensus       218 ~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g~~gG~v~~~~~l~~~l~~~~~~~~~-~~~  295 (427)
T 2w8t_A          218 AVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIF-TAS  295 (427)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTCSCCEEEEECCTTGGGGGGTCHHHHS-SCC
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEecchhhhccCCCEEEeCHHHHHHHHHhcccccc-cCC
Confidence            479999999999999985  4555555 456678762234  459999997 57777643 34332    122233 558


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .||+.++++.++|+.+++ ++++++++++.+++++.|+++
T Consensus       296 ~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  335 (427)
T 2w8t_A          296 LPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM  335 (427)
T ss_dssp             CCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            899999999999999876 678899999999999999886

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.49  E-value=3.6e-14  Score=107.08  Aligned_cols=107  Identities=20%  Similarity=0.184  Sum_probs=81.0

Q ss_pred             ChhhhhCCEEEEcccccc--ccCCCcchhhhhcCCCCCCCE--EEEchhhc-cCcccccc-ccccc----cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTG--GGPCGKFWCHEHFDLEESPDI--VTFSKKMQ-LGGYFLKP-EFVPQ----QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG--~Gr~G~~~~~~~~g~~~~pDi--~t~gK~lg-~gG~~~~~-~~~~~----~~~~~~~T~~   70 (119)
                      ++|++||++||+||+|++  +|++|..+. +.+++...+|+  .+++|+++ +||++..+ .+.+.    .....+++ .
T Consensus       210 ~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~~gg~v~~~~~~~~~~~~~~~~~~~~~-~  287 (409)
T 3kki_A          210 NISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSS-T  287 (409)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCSSCEEEEESSSGGGTHHHHCHHHHHSB-C
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCCCceEEEECHHHHHHHHHhCcCccccC-C
Confidence            479999999999999987  888887655 55676434888  58999997 56666543 23321    12223344 5


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|++++++.++++.+++ ++++++++++.+++++.|+++
T Consensus       288 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  327 (409)
T 3kki_A          288 LLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL  327 (409)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            789999999999999876 467788999999999999876

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.35  E-value=9e-13  Score=99.95  Aligned_cols=107  Identities=13%  Similarity=0.069  Sum_probs=71.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hh-----hhcCCCCCCCEEEEchhhccCcc----ccc--cccccc-cccc-ee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CH-----EHFDLEESPDIVTFSKKMQLGGY----FLK--PEFVPQ-QAYR-VF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~-----~~~g~~~~pDi~t~gK~lg~gG~----~~~--~~~~~~-~~~~-~~   66 (119)
                      ++|++||++||+||+|++++++|... ..     +..+..  +++.+++|+++.+|+    +..  +.+.+. .+.. ..
T Consensus       221 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~  298 (421)
T 3l8a_A          221 ELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFT--IILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLAN  298 (421)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTE--EEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcE--EEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhc
Confidence            47999999999999999998888521 11     122333  678899999963443    322  233321 1112 23


Q ss_pred             eccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++++||++++++.++++..++  ++..++++++.+++++.|+++
T Consensus       299 ~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (421)
T 3l8a_A          299 NQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAK  343 (421)
T ss_dssp             TCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4568999999999999986432  345566777777777777664

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.32  E-value=2.7e-12  Score=96.27  Aligned_cols=107  Identities=26%  Similarity=0.265  Sum_probs=77.7

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCccccccc-ccc----ccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKPE-FVP----QQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~~-~~~----~~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|+ | +|+.|.++. ...++...+|++  +|+|+++ .||++..+. +.+    ....+.+++ +
T Consensus       202 ~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~-~  279 (401)
T 2bwn_A          202 DIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFST-S  279 (401)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSB-C
T ss_pred             HHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCCCEEecCHHHHHHHHHhCcCceecC-C
Confidence            47999999999999998 4 677776654 555653225655  9999997 578876432 221    122223334 5


Q ss_pred             CCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|++++++.++++.+++.   +..++++++.+++++.|+++
T Consensus       280 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (401)
T 2bwn_A          280 LPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  321 (401)
T ss_dssp             CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            5788999999999998763   67788999999999999886

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.25  E-value=1e-11  Score=92.57  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=76.5

Q ss_pred             ChhhhhCCEEEEccccc-cc-cCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-ccccc---cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQT-GG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVPQ---QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~~---~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+|. |+ +++|.... +.++..  ||++  +++|.++ .||++..+ .+.+.   ....+..|+..
T Consensus       192 ~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~--~di~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~  268 (384)
T 1bs0_A          192 QVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVK--PELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSM  268 (384)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCC--CSEEEEESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSBCC
T ss_pred             HHHHHcCcEEEEECCcccceecCCCCchH-HhcCCC--CcEEEeeccchhhccCcEEEeCHHHHHHHHHhchhhhcCCCC
Confidence            47999999999999984 53 55665433 556655  9988  9999997 46776543 23221   11112233478


Q ss_pred             CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ||+.++++.++|+.+++   ++..++++++.+++.+.|+++
T Consensus       269 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (384)
T 1bs0_A          269 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  309 (384)
T ss_dssp             CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998873   367788889999999998775

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.23  E-value=1.7e-11  Score=91.73  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=78.8

Q ss_pred             ChhhhhCCEEEEcccc-ccc-cCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCcccccc-cccccc---ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQ-TGG-GPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKP-EFVPQQ---AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~-tG~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~-~~~~~~---~~~~~~T~~   70 (119)
                      ++|++||+++|+||++ .|+ ++.|..+ .+..++...+|++  +++|++ | .||++..+ .+.+..   ...+..|++
T Consensus       201 ~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~  279 (401)
T 1fc4_A          201 DLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS  279 (401)
T ss_dssp             HHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCC
T ss_pred             HHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEecchhhccCCCCEEEEcCHHHHHHHHHhCcCceeCCC
Confidence            4799999999999999 487 5667653 4456665235888  999999 4 46766543 232211   111223558


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .|+++++++.++|+.+++ +++.++++++.+++++.|+++
T Consensus       280 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (401)
T 1fc4_A          280 LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA  319 (401)
T ss_dssp             CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            899999999999999864 577888999999999999876

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.22  E-value=2.9e-11  Score=90.09  Aligned_cols=107  Identities=18%  Similarity=0.222  Sum_probs=78.0

Q ss_pred             ChhhhhCCEEEEcccc-ccc-cCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccc----ccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQ-TGG-GPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVP----QQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~-tG~-Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~----~~~~~~~~T~   69 (119)
                      ++|++||+++|+||++ .|+ ++.|.. ..+.+++...||++  +++|+++  .||++..+ .+.+    ....+.+ +.
T Consensus       199 ~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~~~~~~~~~~~-~~  276 (399)
T 3tqx_A          199 DLADKYNALVMVDDSHAVGFIGENGRG-TPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLF-SN  276 (399)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECHHHHHHHHHHCHHHHS-SC
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCCcEEEecchHhcccCceEEEEcCHHHHHHHHHhCcceec-cC
Confidence            4799999999999999 464 666654 55667763348998  9999985  25665543 2222    1122222 33


Q ss_pred             CCCHHHHHHHHHHHHHH-h-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTI-H-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i-~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+|+.++++.++++.+ + .++..++++++.+++++.|+++
T Consensus       277 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (399)
T 3tqx_A          277 TVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL  318 (399)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            78999999999999988 4 2567888999999999999887

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.21  E-value=2.7e-11  Score=89.99  Aligned_cols=106  Identities=16%  Similarity=0.078  Sum_probs=70.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||+++++++.+.....+.++..  +++.+|+|+++ .|   |++..+ .+.+. ......+++..+++
T Consensus       181 ~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~  258 (375)
T 3op7_A          181 EIASEVGAYILSDEVYRSFSELDVPSIIEVYDKG--IAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVF  258 (375)
T ss_dssp             HHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTE--EEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHH
T ss_pred             HHHHHcCCEEEEEcccccccccCCCchhhhcCCE--EEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcH
Confidence            4799999999999999987665444444556655  78889999996 33   454432 23322 22334567788999


Q ss_pred             HHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          75 KVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        75 ~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +.+++.++++..++  ++..++++++.+++.+.|++
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  294 (375)
T 3op7_A          259 DDLVAQLALAHYQEILERNRHILEENLAILDQWIEE  294 (375)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999988886432  23344456666666666655

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.13  E-value=8.4e-11  Score=88.04  Aligned_cols=108  Identities=22%  Similarity=0.321  Sum_probs=76.5

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCcccccc-cccccc-c--cceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKP-EFVPQQ-A--YRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~-~~~~~~-~--~~~~~T~~~   71 (119)
                      ++|++||+++|+||++. | +++.+... .+.+++.+.||++  +++|.++ .||++..+ .+.+.. .  ..+..+...
T Consensus       197 ~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~  275 (398)
T 3a2b_A          197 SIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASM  275 (398)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCSSCEEEEECHHHHHHHHHHCHHHHSSBCC
T ss_pred             HHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcCCeEEEecccccccCCCcEEEeCHHHHHHHHHhcccceecCCC
Confidence            47999999999999985 4 45555543 4445654347888  9999997 36887643 232211 1  123345578


Q ss_pred             CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +|+.++++.++|+.++. ++..++++++.+++.+.|+++
T Consensus       276 ~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  314 (398)
T 3a2b_A          276 TPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH  314 (398)
T ss_dssp             CHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc
Confidence            89988888888988754 367788999999999999876

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.12  E-value=5.7e-11  Score=88.00  Aligned_cols=107  Identities=11%  Similarity=-0.001  Sum_probs=70.9

Q ss_pred             ChhhhhCCEEEEccccccccCCC-c----chhhhhcCCCCCCCEEEEchhhccC----cccc--ccccccc-cccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG-K----FWCHEHFDLEESPDIVTFSKKMQLG----GYFL--KPEFVPQ-QAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G-~----~~~~~~~g~~~~pDi~t~gK~lg~g----G~~~--~~~~~~~-~~~~~~~T   68 (119)
                      ++|++||+++|+||+|+++.+.| .    .......+..  +++.+++|++|.+    |+++  .+.+.+. .......+
T Consensus       177 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~  254 (377)
T 3fdb_A          177 DLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC--ITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIK  254 (377)
T ss_dssp             HHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE--EEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHH
T ss_pred             HHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE--EEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhc
Confidence            36999999999999999887777 2    2222223333  5677999999633    4322  2233321 12234457


Q ss_pred             cCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.|+++++++.++|+..++  ++..++++++.+++.+.|++.
T Consensus       255 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (377)
T 3fdb_A          255 DGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKR  297 (377)
T ss_dssp             CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78999999999999886432  345667778888888888764

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.09  E-value=7.6e-11  Score=89.19  Aligned_cols=107  Identities=11%  Similarity=-0.051  Sum_probs=68.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhh----hcCCCCCCCEEEEchhhc-cC---ccccc-cccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHE----HFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~----~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~   69 (119)
                      ++|++||+++|+||+++++++.|... ...    ..+..  +++.+++|.++ .|   |++.. +.+.+. .......|+
T Consensus       209 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~  286 (429)
T 1yiz_A          209 NLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERT--ITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVY  286 (429)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGE--EEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCce--EEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhccc
Confidence            47999999999999999887666421 111    22333  56779999996 33   44332 223221 122334577


Q ss_pred             CCCHHHHHHHHHHHHH-----Hhhhc----HHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDT-----IHNEN----LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~-----i~~~~----~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.|+++++++.++|+.     ...++    ..++++++.+++.+.|+++
T Consensus       287 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  335 (429)
T 1yiz_A          287 TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV  335 (429)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8899999999999987     42233    3445666667777777654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.07  E-value=6.3e-11  Score=89.10  Aligned_cols=107  Identities=18%  Similarity=0.142  Sum_probs=69.9

Q ss_pred             ChhhhhCCEEEEccccccccCCC---cchhhhhcCCCCCCC----EEEEchhhcc-C---ccccc---c-c----ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG---KFWCHEHFDLEESPD----IVTFSKKMQL-G---GYFLK---P-E----FVPQQ   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G---~~~~~~~~g~~~~pD----i~t~gK~lg~-g---G~~~~---~-~----~~~~~   61 (119)
                      ++|++||+++|+||+++++++.|   .......+...  +|    +.+++|++|. |   |++..   + .    +....
T Consensus       210 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~  287 (412)
T 1ajs_A          210 SVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSE--GFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQM  287 (412)
T ss_dssp             HHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT--TCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEcccccccCCcccccchHHHHHhcc--CCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHH
Confidence            47999999999999999998776   33333323212  44    4499999963 3   44443   2 2    22211


Q ss_pred             ccceeeccC-CCHHHHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 AYRVFNTWM-GDPGKVLLLKGIIDTIH------N--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~~~~~~T~~-~~p~~~a~a~a~l~~i~------~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...+..++. .|+++++++.++|+...      +  ++..++++++.+++.+.|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (412)
T 1ajs_A          288 QKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL  344 (412)
T ss_dssp             HHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            112334555 58899999988887542      1  356677888888888888775

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.06  E-value=1.9e-10  Score=87.40  Aligned_cols=107  Identities=13%  Similarity=0.035  Sum_probs=69.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCCCCCCCEE---EEchhhccC----cccccc--------ccccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLEESPDIV---TFSKKMQLG----GYFLKP--------EFVPQQAYR   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pDi~---t~gK~lg~g----G~~~~~--------~~~~~~~~~   64 (119)
                      ++|++||+++|+||++++|++.|..+ ....++..  ++++   +|+|.++..    |++...        .+.......
T Consensus       218 ~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~--~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~  295 (427)
T 3dyd_A          218 AVAARQCVPILADEIYGDMVFSDCKYEPLATLSTD--VPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKL  295 (427)
T ss_dssp             HHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSS--CCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCC--CcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHH
Confidence            47999999999999999998877633 33444544  6666   899986533    444322        122111112


Q ss_pred             eeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 VFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...+++.++++++++.++|+....   ++..++++++.+++.+.|+++
T Consensus       296 ~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (427)
T 3dyd_A          296 SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI  343 (427)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            223678899999999999985332   234556667777777777654

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.06  E-value=1.8e-10  Score=85.71  Aligned_cols=107  Identities=16%  Similarity=0.198  Sum_probs=70.5

Q ss_pred             ChhhhhCCEEEEccccccc--cCCCcchhhhhcCCCCCCCEEEEchhhc-cC---ccccc-cccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGG--GPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~--Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++||+++|+||+++++  |+.+........+..  +++.+++|.++ .|   |++.. +.+.+. .....+.+++.+
T Consensus       179 ~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~--~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~  256 (381)
T 1v2d_A          179 RLARAHDLFLISDEVYDELYYGERPRRLREFAPERT--FTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAP  256 (381)
T ss_dssp             HHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTE--EEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCC
T ss_pred             HHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCE--EEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhcccCCC
Confidence            4799999999999999876  333222111123444  67779999986 23   44443 233321 112234567789


Q ss_pred             HHHHHHHHHHHHHH--hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTI--HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i--~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++++++.++|+..  ++  ++..++++++.+++.+.|++.
T Consensus       257 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (381)
T 1v2d_A          257 TPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM  297 (381)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999876  32  346677888888888888774

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.04  E-value=3.1e-10  Score=84.61  Aligned_cols=108  Identities=12%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-chhhhhc-CCCCCCCEE--EEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHF-DLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~-g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+++++...|. ......+ +.. .+|++  +++|.+| .|   |++..+ .+.+. .......+++
T Consensus       187 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~  265 (389)
T 1gd9_A          187 DFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMF-ERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATC  265 (389)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCG-GGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCC-CCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhhccC
Confidence            479999999999999998766654 2222222 211 24544  8999996 33   454432 23221 1122334667


Q ss_pred             CCHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN----ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~----~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++++.+++.++|+..++    ++..++++++.+++.+.|+++
T Consensus       266 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (389)
T 1gd9_A          266 PVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  308 (389)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            889999998888876443    345566777888888888775

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.02  E-value=3.2e-10  Score=86.30  Aligned_cols=109  Identities=10%  Similarity=-0.047  Sum_probs=69.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC--CCCCEEEEchhhc-cC---ccccc-cccccc---------ccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE--ESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ---------QAY   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~--~~pDi~t~gK~lg-~g---G~~~~-~~~~~~---------~~~   63 (119)
                      ++|++||+++|+||+|++|+..|.. .....+...  ..+++.+|+|++| .|   |++.. +.+.+.         ...
T Consensus       236 ~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~  315 (449)
T 3qgu_A          236 NFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRV  315 (449)
T ss_dssp             HHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHH
T ss_pred             HHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHH
Confidence            3799999999999999988666531 122222111  0145669999997 44   55543 233321         111


Q ss_pred             ceeeccCCCHHHHHHHHHHHHHHh---hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          64 RVFNTWMGDPGKVLLLKGIIDTIH---NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 ~~~~T~~~~p~~~a~a~a~l~~i~---~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ....+++.++++.+++.++++...   -++..++++++.+++++.|+++
T Consensus       316 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  364 (449)
T 3qgu_A          316 MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM  364 (449)
T ss_dssp             HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            123344789999999988887521   1356677888888899888875

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.00  E-value=2.5e-10  Score=84.78  Aligned_cols=108  Identities=9%  Similarity=-0.025  Sum_probs=71.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCC----EEEEchhhc-cC---ccccc--ccccccc-cc-ceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPD----IVTFSKKMQ-LG---GYFLK--PEFVPQQ-AY-RVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pD----i~t~gK~lg-~g---G~~~~--~~~~~~~-~~-~~~~   67 (119)
                      ++|++||+++|+||+|+++.+.|.. .....++. ..||    +.+++|++| .|   |++..  +.+.+.. .. ....
T Consensus       187 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~  265 (391)
T 3dzz_A          187 ELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDW-DAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAG  265 (391)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCT-TTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCEEEEecccccccCCCCCceehhhcCc-cccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhc
Confidence            4799999999999999988777752 23333321 1277    458999986 34   55443  2333221 11 1234


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++.|+++++++.++++..++  ++..++++++.+++.+.|++.
T Consensus       266 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~  309 (391)
T 3dzz_A          266 IGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKE  309 (391)
T ss_dssp             CSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567899999999999887432  345666777888888888763

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=98.98  E-value=3.2e-10  Score=85.43  Aligned_cols=107  Identities=13%  Similarity=0.105  Sum_probs=68.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhc----CCCCCCCEEEEchhhc-cC---cccccc-ccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHF----DLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~----g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~   69 (119)
                      ++|++||+++|+||+|+++.+.|.. .....+    +..  +.+.+++|.+| .|   |++..+ .+.+. .......++
T Consensus       199 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~  276 (412)
T 2x5d_A          199 ALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIA--VEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDY  276 (412)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTE--EEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcE--EEEecCccccCCcccceEEEEcCHHHHHHHHHHHhhhcc
Confidence            4799999999999999987655531 111111    222  44559999996 33   444432 23221 122234467


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.|+++++++.++|+..++  ++..++++++.+++.+.|+++
T Consensus       277 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (412)
T 2x5d_A          277 GTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA  318 (412)
T ss_dssp             CCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8899999999888875432  346667788888888888875

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=98.98  E-value=5e-10  Score=83.61  Aligned_cols=107  Identities=17%  Similarity=0.090  Sum_probs=63.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCCCCCCEEEEchhhc-cC---ccccc-cccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||+++++...|.. ...+..+..  ..+.+++|.+| .|   |++.. +.+.+. .......+++.|+
T Consensus       188 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~  265 (391)
T 3h14_A          188 EAAQAQGASFISDEIYHGIEYEAKAVTALELTDEC--YVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQNMFICAPH  265 (391)
T ss_dssp             HHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSS--EEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHcCCEEEEECcchhcccCCCCcChhhcCCCE--EEEEechhccCCccceeEEEEeCHHHHHHHHHHHhhhccCCCH
Confidence            4799999999999999988766643 222221111  33338999996 33   44433 233321 1222345667899


Q ss_pred             HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.+++.++++..+. ++..++++++-+++.+.|+++
T Consensus       266 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  302 (391)
T 3h14_A          266 ASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA  302 (391)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999988888871111 234445566666666666654

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=98.97  E-value=6.5e-11  Score=88.53  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=63.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcC-CC--CCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFD-LE--ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g-~~--~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|+++++.|... .....+ ..  ..+++.+|+|++| .|   |++..+ .+.+. .......+++
T Consensus       206 ~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~  285 (407)
T 3nra_A          206 ALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLR  285 (407)
T ss_dssp             HHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccC
Confidence            47999999999999999876666532 222222 11  0144558999996 34   554432 23221 1222334566


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++++++++.++|+..++  ++..++++++.+++++.|+++
T Consensus       286 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  326 (407)
T 3nra_A          286 AAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGC  326 (407)
T ss_dssp             SCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            788888777766652111  233445566666666666553

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=98.97  E-value=6.1e-10  Score=85.17  Aligned_cols=107  Identities=13%  Similarity=0.011  Sum_probs=71.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCc---chhh--hhcCCCCCCCEEEEchhhc-cC---ccccc-c-ccccc-cccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK---FWCH--EHFDLEESPDIVTFSKKMQ-LG---GYFLK-P-EFVPQ-QAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~---~~~~--~~~g~~~~pDi~t~gK~lg-~g---G~~~~-~-~~~~~-~~~~~~~T   68 (119)
                      ++|++||+++|+||+++++...|.   ....  ...+..  +++.+++|.++ .|   |++.. + .+.+. .......+
T Consensus       228 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~  305 (447)
T 3b46_A          228 NICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLT--LTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRIC  305 (447)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTE--EEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcE--EEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhcc
Confidence            479999999999999998766553   1111  124544  67779999996 34   55544 2 23322 12223457


Q ss_pred             cCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.+++..+++.++|+....+    +..++++++.+++.+.|+++
T Consensus       306 ~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  350 (447)
T 3b46_A          306 FASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL  350 (447)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            788999999999999876333    35556777778888888765

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=98.96  E-value=1.4e-09  Score=80.45  Aligned_cols=105  Identities=11%  Similarity=-0.004  Sum_probs=65.5

Q ss_pred             Chhhhh--CCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccC----cccccc-ccccccccceeeccCCCH
Q psy4800           1 MYEKYH--GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLG----GYFLKP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~--~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~g----G~~~~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      ++|++|  |+++|+||++++|+..+........+..  +++.+++|. +..    |++..+ .+..... ....+++.|+
T Consensus       184 ~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~-~~~~~~~~~~  259 (367)
T 3euc_A          184 RAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNL--LVMRTVSKL-GLAGIRLGYVAGDPQWLEQLD-KVRPPYNVNV  259 (367)
T ss_dssp             HHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTE--EEEEECCCT-TSCSCCEEEEEECHHHHHHHG-GGCCSSCCCH
T ss_pred             HhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCE--EEEecchhh-cccccCceeeeeCHHHHHHHH-HhCCCCCCCH
Confidence            369999  9999999999987654443333334433  667799999 533    444332 2222111 1123567899


Q ss_pred             HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++.++|+..+. ++..++++++.+++.+.|+++
T Consensus       260 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  296 (367)
T 3euc_A          260 LTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAH  296 (367)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999998876221 244555666666666666653

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=98.95  E-value=7e-10  Score=81.66  Aligned_cols=105  Identities=12%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc-cC---cccc-c-cccccccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ-LG---GYFL-K-PEFVPQQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg-~g---G~~~-~-~~~~~~~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+++++.+.+........+..  ++++   +++|.+| .|   |++. . +.+.+... ....+++.
T Consensus       171 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~-~~~~~~~~  247 (361)
T 3ftb_A          171 KLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNY--SCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIK-AKQNPWNI  247 (361)
T ss_dssp             HHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTC--SSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHH-TTSCTTCS
T ss_pred             HHhhhcCCEEEEECcchhhcCCcccchhHhcccC--CCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHH-hhCCCCCC
Confidence            3688999999999999887654222222222322  3433   8999986 33   4433 2 22322111 11235688


Q ss_pred             CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      |+++++++.++|+.-+. ++..++++++.+++++.|++
T Consensus       248 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  285 (361)
T 3ftb_A          248 NCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNK  285 (361)
T ss_dssp             CHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888873111 23344455555666666654

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=98.95  E-value=6.6e-10  Score=82.32  Aligned_cols=105  Identities=13%  Similarity=0.044  Sum_probs=62.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhh-h--------hcCCCCCCCEEEEchhhc-cC---cccccc-ccccc-cccce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCH-E--------HFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~-~--------~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~   65 (119)
                      ++|++||+++|+||+++++.+.|..... +        ..+..  +++.+++|.+| .|   |++..+ .+.+. .....
T Consensus       181 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~  258 (376)
T 3ezs_A          181 KLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNV--LVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRA  258 (376)
T ss_dssp             HHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTE--EEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHT
T ss_pred             HHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcE--EEEecchhccCCccceeEEEeeCHHHHHHHHHHHh
Confidence            3699999999999999988776643222 1        23333  55669999996 33   444332 23221 12223


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHH
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRL  107 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~  107 (119)
                      ..+++.|+++++++.++|+..+. ++..++++++-+++.+.|+
T Consensus       259 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  301 (376)
T 3ezs_A          259 YLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK  301 (376)
T ss_dssp             TTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST
T ss_pred             hhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            45678899999999888874211 1233344444444444443

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=98.95  E-value=3.9e-10  Score=84.01  Aligned_cols=107  Identities=11%  Similarity=0.012  Sum_probs=69.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc----hhhh--hcCCCCCCCEEEEchhhc-cC---ccccc-cccccc-cccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF----WCHE--HFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~----~~~~--~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T   68 (119)
                      ++|++||+++|+||+++++...|..    ....  .++..  +++.+++|.+| .|   |++.. +.+.+. ......+|
T Consensus       190 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~  267 (388)
T 1j32_A          190 QVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERS--VVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHST  267 (388)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTE--EEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTT
T ss_pred             HHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCE--EEEeechhccCCcccceEEEEeCHHHHHHHHHHHhhcc
Confidence            4799999999999999887655531    2111  13333  66779999996 33   44443 223221 11223456


Q ss_pred             cCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.+++++.++.++|+..++  ++..++++++.+++.+.|+++
T Consensus       268 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (388)
T 1j32_A          268 SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM  310 (388)
T ss_dssp             CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            77889999888888874322  245667778888888888764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=98.95  E-value=3.5e-10  Score=84.32  Aligned_cols=107  Identities=18%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCc----chhhh-hcCCCCCCCEEEEchhhc-cC---ccccc-cccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK----FWCHE-HFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~----~~~~~-~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~   69 (119)
                      ++|++||+++|+||+++++...|.    ..... ..+..  +.+.+++|.++ .|   |++.. +.+.+. .......++
T Consensus       190 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~  267 (386)
T 1u08_A          190 QAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA--VAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTF  267 (386)
T ss_dssp             HHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE--EEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcE--EEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhhcc
Confidence            479999999999999998765553    22221 23443  56679999996 33   44443 223221 122233567


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.++++++++.++|+..++  ++..++++++.+++.+.|+++
T Consensus       268 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (386)
T 1u08_A          268 SVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES  309 (386)
T ss_dssp             SCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred             CCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            7889988888888876422  245566667777777776653

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=98.94  E-value=1e-09  Score=81.20  Aligned_cols=106  Identities=11%  Similarity=0.066  Sum_probs=67.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++||+++|+||+|++|+..+.....+..+..  +.+.+++|.+| .|   |++..+ .+.+... ....+++.|+++
T Consensus       173 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~-~~~~~~~~~~~~  249 (360)
T 3hdo_A          173 ELARRCAGMLVLDETYAEFAESNALELVRRHENV--VVTRTLSKSYSLAGMRIGLAIARPEVIAALD-KIRDHYNLDRLA  249 (360)
T ss_dssp             HHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSE--EEEEESTTTTSCTTSCCEEEECCHHHHHHHH-HHSCSCCSCHHH
T ss_pred             HHHHHCCCEEEEECChHhhCCcchhHHhccCCCE--EEEecchHhhcCCccceeeEeeCHHHHHHHH-HhCCCCCCCHHH
Confidence            4799999999999999887433333233333333  55668999986 33   454432 2322111 112346789999


Q ss_pred             HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          76 VLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        76 ~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++.++|+..+. ++..++++++.+++.+.|+++
T Consensus       250 ~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  284 (360)
T 3hdo_A          250 QAACVAALRDQAYLSECCRRIRETREWFTTELRSI  284 (360)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999885221 345566777777788777765

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=98.94  E-value=2.7e-10  Score=84.66  Aligned_cols=109  Identities=13%  Similarity=0.076  Sum_probs=65.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++||+++|+||+|+++.+.|.. ......+.. ..+++.+++|++| .|   |++..+ .+.+. .......+++.|
T Consensus       185 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~  264 (376)
T 2dou_A          185 GLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQY  264 (376)
T ss_dssp             HHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSC
T ss_pred             HHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhcccCCC
Confidence            4799999999999999987665532 112221211 0145569999996 33   454432 23221 112233456778


Q ss_pred             HHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++++++.++|+..++  ++..++++++.+++.+.|+++
T Consensus       265 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (376)
T 2dou_A          265 AGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV  303 (376)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888888865321  234455666777777777653

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=98.94  E-value=4e-10  Score=85.56  Aligned_cols=108  Identities=14%  Similarity=0.136  Sum_probs=63.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchh-hhhcCCCCC-------CC----EEEEchhhc-cC---ccccc-c-ccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEES-------PD----IVTFSKKMQ-LG---GYFLK-P-EFVPQQA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~-------pD----i~t~gK~lg-~g---G~~~~-~-~~~~~~~   62 (119)
                      ++|++||+++|+||+|+++++.|..+. ......+..       +|    +.+|+|++| .|   |++.. + .+.... 
T Consensus       218 ~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~-  296 (435)
T 3piu_A          218 SFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAA-  296 (435)
T ss_dssp             HHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHH-
T ss_pred             HHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHH-
Confidence            479999999999999998766665322 111111000       23    558999996 33   45443 2 222211 


Q ss_pred             cceeeccCCCHHHHHHHHHHHHHHh---h--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 YRVFNTWMGDPGKVLLLKGIIDTIH---N--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ~~~~~T~~~~p~~~a~a~a~l~~i~---~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+.+++..++++.+++.+.++..+   +  ++..++++++.+++++.|+++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          297 TKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             HHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1123344567888887777776332   1  234556677777777777764

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=98.94  E-value=3.7e-10  Score=83.78  Aligned_cols=108  Identities=14%  Similarity=0.150  Sum_probs=69.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhc-CCCCCCCE--EEEchhhc-cC---cccccc-ccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHF-DLEESPDI--VTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~-g~~~~pDi--~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+|+++...|.......+ +.. ..|+  .+++|.+| .|   |++..+ .+.+. .......+++.
T Consensus       177 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~  255 (370)
T 2z61_A          177 EFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENL-EKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNLFISA  255 (370)
T ss_dssp             HHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTC-SSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCC-CcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhcccCC
Confidence            4799999999999999877555543222222 111 1344  48999996 33   454432 33221 12223346678


Q ss_pred             CHHHHHHHHHHHHH-Hhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDT-IHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~-i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      |+++++++.++|+. .++  ++..++++++.+++.+.|+++
T Consensus       256 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  296 (370)
T 2z61_A          256 PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF  296 (370)
T ss_dssp             CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999998888875 222  345677888888888888875

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=98.94  E-value=6.1e-10  Score=83.16  Aligned_cols=105  Identities=14%  Similarity=0.047  Sum_probs=68.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-ccccc-cccceeeccC-CCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVPQ-QAYRVFNTWM-GDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~~-~~~~~~~T~~-~~p   73 (119)
                      ++|++||+++|+||+|+ +|+++...  ...++ ..+|++  +++|+++  .||++..+ .+.+. .+.....+++ .++
T Consensus       185 ~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~-~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~  260 (405)
T 2vi8_A          185 EIADEVGAYLMVDMAHI-AGLVAAGL--HPNPV-PYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQGGPLM  260 (405)
T ss_dssp             HHHHHHTCEEEEECTTT-HHHHHTTS--SCCST-TTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCSSCCH
T ss_pred             HHHHHcCCEEEEEcccc-ccccccCc--CCCcc-ccCCEEEEeccccCCCCCCeEEEEcHHHHHHHHhhhcccccCCCCH
Confidence            47999999999999987 55443211  11222 138887  8999985  35666543 33221 1111111223 478


Q ss_pred             HHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++++.++++.+.+   ++..++++++.+++.+.|+++
T Consensus       261 ~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  299 (405)
T 2vi8_A          261 HVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE  299 (405)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            888888889988764   467788899999999999875

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=98.93  E-value=1.2e-09  Score=81.93  Aligned_cols=103  Identities=13%  Similarity=0.023  Sum_probs=68.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc--C-ccccc-ccc----cc-ccccce------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL--G-GYFLK-PEF----VP-QQAYRV------   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~--g-G~~~~-~~~----~~-~~~~~~------   65 (119)
                      ++|++||+++|+||+|+  |  +..+..+.++++  +.+.++.|++++  | |++.. +.+    .. ..+.++      
T Consensus       162 ~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d--~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~  235 (379)
T 3ke3_A          162 EAVHSVGGLLVIDCIAS--G--CVWLDMKELGID--VLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQW  235 (379)
T ss_dssp             HHHHHTTCEEEEECTTC--T--TCCCCHHHHTCS--EEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHH
T ss_pred             HHHHHcCCEEEEEeccc--C--CccccccccCCC--EEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHH
Confidence            47999999999999986  4  344455566654  444466699852  1 33332 222    11 111111      


Q ss_pred             ------------eeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 ------------FNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ------------~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                  ..+++.|+..+++..++|+.++++   +..++.+++.+++++.|+++
T Consensus       236 ~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~  294 (379)
T 3ke3_A          236 LTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK  294 (379)
T ss_dssp             HHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc
Confidence                        123367888888899999998764   56778889999999999876

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=98.93  E-value=1.2e-09  Score=81.53  Aligned_cols=106  Identities=12%  Similarity=-0.012  Sum_probs=63.8

Q ss_pred             ChhhhhCCEEEEccccccccCCC-cchh-hh-------hcCCCCCCCEEEEchhhccC----cccccc-ccccc-cccce
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG-KFWC-HE-------HFDLEESPDIVTFSKKMQLG----GYFLKP-EFVPQ-QAYRV   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G-~~~~-~~-------~~g~~~~pDi~t~gK~lg~g----G~~~~~-~~~~~-~~~~~   65 (119)
                      ++|++||+++|+||+++++.+.| .... .+       ..+..  +++.+|+|+++..    |++..+ .+.+. .....
T Consensus       195 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~  272 (396)
T 3jtx_A          195 DLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKL--LMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRT  272 (396)
T ss_dssp             HHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTE--EEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcE--EEEeccccccCCcccceEEEEeCHHHHHHHHHHHh
Confidence            47999999999999999887766 3222 11       12333  6677999986533    444332 23221 12223


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+++.|+++.+++.++|+.-+. ++.+++++++-+++.+.|++
T Consensus       273 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  316 (396)
T 3jtx_A          273 YHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQ  316 (396)
T ss_dssp             HHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45678899999999888864111 12334455555555555544

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=98.92  E-value=5.1e-10  Score=84.29  Aligned_cols=107  Identities=14%  Similarity=0.056  Sum_probs=67.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhh----cCCCCCCCEEEEchhhc-cC---ccccc-cccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEH----FDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~----~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~   69 (119)
                      ++|++||+++|+||+++++...|.. .....    .+..  +.+.+++|.+| .|   |++.. +.+.+. .......++
T Consensus       187 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~  264 (411)
T 2o0r_A          187 EIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERT--ITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSY  264 (411)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE--EEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCE--EEEeechhhcCCccceEEEEeeCHHHHHHHHHHHhhccC
Confidence            4799999999999999987666642 11111    2222  44558999996 33   44443 223221 112233466


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.++++.+++.++|+..++  ++..++++++.+++.+.|+++
T Consensus       265 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  306 (411)
T 2o0r_A          265 VGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI  306 (411)
T ss_dssp             CCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7788888888888876432  345667778888888888765

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=98.92  E-value=9.4e-10  Score=82.36  Aligned_cols=109  Identities=12%  Similarity=0.019  Sum_probs=66.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCCC--CCCCEEEEchhhc-cC---ccccc-cccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLE--ESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~--~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+++++.+.|... ....+...  ..+++.+++|.+| .|   |++.. ..+... ......++++.
T Consensus       194 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~  273 (410)
T 3e2y_A          194 DLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTC  273 (410)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCC
Confidence            47999999999999999887777522 22222211  0134458999996 33   44433 223221 12233457788


Q ss_pred             CHHHHHHHHHHHHHH-------hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTI-------HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i-------~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++++.++|+..       ++  ++..++++++.+++.+.|+++
T Consensus       274 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  320 (410)
T 3e2y_A          274 ATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV  320 (410)
T ss_dssp             CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999988741       11  234455666667777777654

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=98.92  E-value=6e-10  Score=84.02  Aligned_cols=107  Identities=13%  Similarity=0.033  Sum_probs=67.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc---hhhh-hcCCCCCCCEEEEchhhc-cC---cccccc-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF---WCHE-HFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~---~~~~-~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+++++...|..   .... ..+..  +.+.+++|.+| .|   |++..+ .+.+. .......+++
T Consensus       208 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~  285 (404)
T 2o1b_A          208 AKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVA--IEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAG  285 (404)
T ss_dssp             HHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHE--EEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCE--EEEEecchhccCchhheEeEecCHHHHHHHHHHHhhccCC
Confidence            4799999999999999987555531   1111 11222  45569999996 33   444332 23221 1122334567


Q ss_pred             CCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .|+++++++.++|+..++  ++.+++++++.+++.+.|+++
T Consensus       286 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  326 (404)
T 2o1b_A          286 MFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA  326 (404)
T ss_dssp             CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999888876422  244556777777888888765

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=98.92  E-value=8.1e-10  Score=81.84  Aligned_cols=107  Identities=12%  Similarity=0.044  Sum_probs=61.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCC-CCCCEEEEchhhc-cC---cccc-c-cccccccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFL-K-PEFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~-~-~~~~~~~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||++++++..+... .+..+.. ..+.+.+++|++| .|   |++. . +.+.+.... ...+++.|+
T Consensus       173 ~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~-~~~~~~~~~  250 (364)
T 1lc5_A          173 DRCKSLNINLILDEAFIDFIPHETGF-IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRR-QQMPWSVNA  250 (364)
T ss_dssp             HHHHHHTCEEEEECTTGGGSTTCCCS-GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHH-HSCTTCSCH
T ss_pred             HHhhhcCcEEEEECcChhhccCccch-hhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHH-hCCCCCCCH
Confidence            47999999999999998775444321 2222211 0134459999996 33   5544 3 223221111 123668899


Q ss_pred             HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++.++|+.-+. ++..++++++.+++.+.|+++
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  287 (364)
T 1lc5_A          251 LAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL  287 (364)
T ss_dssp             HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999888887764110 233444556666666666543

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.91  E-value=1.5e-09  Score=82.24  Aligned_cols=109  Identities=12%  Similarity=0.017  Sum_probs=68.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC-CCCCEEEEchhhccC---ccccc-cccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE-ESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~-~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||+++++...|.. .....++.. ....+.+|+|+++.|   |++.. +.+.+. .......+++.|+
T Consensus       215 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~  294 (425)
T 1vp4_A          215 EIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPA  294 (425)
T ss_dssp             HHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCH
Confidence            4799999999999999987665642 222222211 003345899999623   44433 233221 1122234567799


Q ss_pred             HHHHHHHHHHHHH--hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTI--HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i--~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++.++|+..  ++  ++..++++++.+++.+.|++.
T Consensus       295 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  334 (425)
T 1vp4_A          295 ITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY  334 (425)
T ss_dssp             HHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998864  22  245566778888888888775

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=98.91  E-value=2e-09  Score=81.69  Aligned_cols=108  Identities=12%  Similarity=0.050  Sum_probs=62.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC-CCCCEEEEchhhccC---ccccc-cccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE-ESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~-~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||+++++...|.. .....++.. ..+.+.+|+|.++.|   |++.. +.+.+. .......+++.|+
T Consensus       218 ~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~  297 (425)
T 2r2n_A          218 ELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPST  297 (425)
T ss_dssp             HHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCH
T ss_pred             HHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCH
Confidence            4799999999999999876555531 111112211 014455999999633   44443 233321 1122234567899


Q ss_pred             HHHHHHHHHHHHHhhhc-------HHHHHHHHHHHHHHHHHh
Q psy4800          74 GKVLLLKGIIDTIHNEN-------LLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~-------~~~~~~~~g~~l~~~L~~  108 (119)
                      ++.+++.++|+.+.+++       ..++++++-+++.+.|++
T Consensus       298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  339 (425)
T 2r2n_A          298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADK  339 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888753322       233444555555555554

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.91  E-value=1.4e-09  Score=81.22  Aligned_cols=107  Identities=7%  Similarity=-0.107  Sum_probs=66.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCC-CCCC-EEEEchhhc-cC---ccccc--ccccccc-ccce-eecc-
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE-ESPD-IVTFSKKMQ-LG---GYFLK--PEFVPQQ-AYRV-FNTW-   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~-~~pD-i~t~gK~lg-~g---G~~~~--~~~~~~~-~~~~-~~T~-   69 (119)
                      ++|++||+++|+||+|+++.+.|.... ....+. ..+| +.+++|.+| .|   |++..  +.+.+.. .... .+++ 
T Consensus       189 ~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~  267 (390)
T 1d2f_A          189 DLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS  267 (390)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccC
Confidence            479999999999999998876665321 112222 0013 789999996 33   44442  2333211 1122 3454 


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +.|+++++++.++++..++  ++..++++++.+++.+.|++
T Consensus       268 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  308 (390)
T 1d2f_A          268 SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNA  308 (390)
T ss_dssp             SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6799999999888875322  23445566677777777765

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.89  E-value=2.9e-09  Score=79.71  Aligned_cols=109  Identities=13%  Similarity=-0.025  Sum_probs=68.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC-CCCCEEEEchhhcc---Cccccc-cccccc-cccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE-ESPDIVTFSKKMQL---GGYFLK-PEFVPQ-QAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~-~~pDi~t~gK~lg~---gG~~~~-~~~~~~-~~~~~~~T~~~~p   73 (119)
                      ++|++||+++|+||+++++...|.. .....++.. ..+++.+|+|.++.   .|++.. +.+.+. .......+++.++
T Consensus       202 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~  281 (407)
T 2zc0_A          202 EIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPA  281 (407)
T ss_dssp             HHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCH
T ss_pred             HHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCH
Confidence            4799999999999999887665542 222223221 11456689999962   233332 223221 1112234566789


Q ss_pred             HHHHHHHHHHHHH--h-h--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTI--H-N--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i--~-~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++.+.|+..  + +  ++..++++++.+++.+.|++.
T Consensus       282 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (407)
T 2zc0_A          282 ISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH  322 (407)
T ss_dssp             HHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988888764  2 1  346667778888888888764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=98.88  E-value=1.6e-09  Score=80.34  Aligned_cols=106  Identities=8%  Similarity=-0.022  Sum_probs=66.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhc-----CCCCCCCEEEEchhhc-cC---ccccc-c-cccccc-cc-cee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHF-----DLEESPDIVTFSKKMQ-LG---GYFLK-P-EFVPQQ-AY-RVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~-----g~~~~pDi~t~gK~lg-~g---G~~~~-~-~~~~~~-~~-~~~   66 (119)
                      ++|++||+++|+||+|+++.+.|... ....+     +..  +.+.+++|++| .|   |++.. + .+.+.. .. ..+
T Consensus       191 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~  268 (391)
T 4dq6_A          191 DICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNT--ITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRI  268 (391)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTE--EEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcE--EEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhh
Confidence            47999999999999999887776421 11111     111  34558999996 33   44432 2 333211 11 223


Q ss_pred             eccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ++++.|+++++++.++++..++  ++..++++++.+++++.|++
T Consensus       269 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  312 (391)
T 4dq6_A          269 DIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINE  312 (391)
T ss_dssp             TCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4557899999999999886432  24455666777777777765

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=98.88  E-value=3.7e-09  Score=78.06  Aligned_cols=101  Identities=15%  Similarity=-0.040  Sum_probs=60.4

Q ss_pred             hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC----EEEEchhhc-cC---ccccc-cccccccccceeeccCCCH
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD----IVTFSKKMQ-LG---GYFLK-PEFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD----i~t~gK~lg-~g---G~~~~-~~~~~~~~~~~~~T~~~~p   73 (119)
                      |++ |+++|+||+|++|++ |...........  +|    +.+++|.+| .|   |++.. +.+.+.... ...+++.|+
T Consensus       184 ~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~-~~~~~~~~~  258 (363)
T 3ffh_A          184 VPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRT--YKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNI-VRPPFNTTS  258 (363)
T ss_dssp             SCT-TSEEEEECTTGGGCS-SCCCCCGGGGGT--CTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHH-TCCSCCCBH
T ss_pred             CCC-CcEEEEeCchHhhcC-ccccCHHHHhhc--CCCEEEEeechhhhcCchhceeeeecCHHHHHHHHH-hCCCCCCCH
Confidence            444 999999999998866 653322222212  33    458999996 33   44433 223221111 123678999


Q ss_pred             HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHh
Q psy4800          74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ++++++.++|+..+. ++..++++++.+++.+.|++
T Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  294 (363)
T 3ffh_A          259 IGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKR  294 (363)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999873321 23445566666666666665

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=98.88  E-value=3.3e-09  Score=79.67  Aligned_cols=109  Identities=16%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC--CCCCEEEEchhhc-cC---ccccc-ccc-------ccc-cccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE--ESPDIVTFSKKMQ-LG---GYFLK-PEF-------VPQ-QAYR   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~--~~pDi~t~gK~lg-~g---G~~~~-~~~-------~~~-~~~~   64 (119)
                      ++|++||+++|+||++++++..|.. .....++-.  ..+.+.+|+|.+| .|   |++.. +.+       ... ....
T Consensus       190 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~  269 (400)
T 3asa_A          190 HYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERF  269 (400)
T ss_dssp             HHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHH
T ss_pred             HHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHH
Confidence            3799999999999999988665531 122222211  0023559999996 34   45433 233       111 1111


Q ss_pred             eeecc-CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 VFNTW-MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~~~T~-~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+++ +.|+++.+++.++|+...-++..++++++.+++++.|+++
T Consensus       270 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  315 (400)
T 3asa_A          270 LSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT  315 (400)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            22344 5788988888888876533467788889999999999875

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.88  E-value=1.1e-09  Score=81.98  Aligned_cols=108  Identities=12%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCE--EEEchhhc-cC---ccccc-cccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDI--VTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi--~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++||+++|+||+++++...|.......+.-....|+  .+++|.+| .|   |++.. +.+.+. .......+++.+
T Consensus       201 ~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~  280 (389)
T 1o4s_A          201 RLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCIN  280 (389)
T ss_dssp             HHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhhcccCCC
Confidence            479999999999999987765553222222211111454  48999996 33   55443 233221 122233466788


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++..++.++|+.. -++..++++++.+++.+.|+++
T Consensus       281 ~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~  316 (389)
T 1o4s_A          281 TVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM  316 (389)
T ss_dssp             HHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc
Confidence            98888877776532 3456778888999999999876

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=98.88  E-value=1.8e-09  Score=80.64  Aligned_cols=106  Identities=10%  Similarity=-0.079  Sum_probs=63.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhc-----CCCCCCCEEEEchhhc-cC---cccccc--ccccc-cccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHF-----DLEESPDIVTFSKKMQ-LG---GYFLKP--EFVPQ-QAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~-----g~~~~pDi~t~gK~lg-~g---G~~~~~--~~~~~-~~~~~~~   67 (119)
                      ++|++||+++|+||+|+++++.|.. .....+     +..  +++.+++|.+| .|   |++...  .+.+. .......
T Consensus       191 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~  268 (399)
T 1c7n_A          191 DIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKT--ITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDAT  268 (399)
T ss_dssp             HHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTE--EEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcE--EEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhc
Confidence            4799999999999999988766642 112111     222  44558999996 33   444432  24332 1111222


Q ss_pred             cc-CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          68 TW-MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        68 T~-~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ++ +.|+++++++.++|+..++  ++..++++++.+++.+.|++
T Consensus       269 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  312 (399)
T 1c7n_A          269 SGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEV  312 (399)
T ss_dssp             TCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33 5789999999888875321  23445566666777777665

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=98.88  E-value=3e-09  Score=80.31  Aligned_cols=107  Identities=9%  Similarity=-0.006  Sum_probs=69.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc---------hhhhh-cCCCCCCCEEEEchhhc-cC---ccccc-ccccc-c----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF---------WCHEH-FDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVP-Q----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~---------~~~~~-~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~-~----   60 (119)
                      ++|++||+++|+||+|+++...+..         ..... .+..  ..+.+++|.++ .|   |++.. ..+.. .    
T Consensus       209 ~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~  286 (437)
T 3g0t_A          209 ELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNY--ILALSSSKAFSYAGQRIGVLMISGKLYEREYPDL  286 (437)
T ss_dssp             HHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCE--EEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGG
T ss_pred             HHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcE--EEEEcCccCCCCccceeEEEEECHHHhhhhhhcc
Confidence            4799999999999999865333321         11111 2211  33448999986 33   55443 23332 2    


Q ss_pred             --------------cccceeeccCCCHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 --------------QAYRVFNTWMGDPGKVLLLKGIIDTIH-----NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 --------------~~~~~~~T~~~~p~~~a~a~a~l~~i~-----~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                    .......++..++++.+++.++|+..+     -++..++++++.+++++.|+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  354 (437)
T 3g0t_A          287 EESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN  354 (437)
T ss_dssp             HHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                          122234577889999999999998875     2456777888888899888875

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=98.39  E-value=2e-10  Score=85.98  Aligned_cols=106  Identities=11%  Similarity=0.008  Sum_probs=62.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc----hhhhh--cCCCCCCCEEEEchhhc-cC---ccccc-cc-ccccc-ccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF----WCHEH--FDLEESPDIVTFSKKMQ-LG---GYFLK-PE-FVPQQ-AYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~----~~~~~--~g~~~~pDi~t~gK~lg-~g---G~~~~-~~-~~~~~-~~~~~~   67 (119)
                      ++|++||+++|+||+++++.+.|..    .....  .+..  +++.+|+|+++ .|   |+++. +. +.+.. ......
T Consensus       191 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~  268 (392)
T 3b1d_A          191 HLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFA--LVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN  268 (392)
Confidence            5799999999999999988766632    22211  2333  67779999996 33   55543 22 44322 122222


Q ss_pred             cc-CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          68 TW-MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        68 T~-~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ++ +.|+++++++.++|+..++  ++..++++++.+++.+.|++
T Consensus       269 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  312 (392)
T 3b1d_A          269 NHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQ  312 (392)
Confidence            22 4688899988888874221  12333344444455554443

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=98.87  E-value=2.1e-09  Score=80.90  Aligned_cols=109  Identities=12%  Similarity=0.080  Sum_probs=67.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCC--CCCCCEEEEchhhc-cC---ccccc-cccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDL--EESPDIVTFSKKMQ-LG---GYFLK-PEFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~--~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+|+++.+.|.. .....+..  ...+++.+++|.+| .|   |++.. ..+... ......++++.
T Consensus       201 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~  280 (422)
T 3fvs_A          201 SLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHC  280 (422)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCC
Confidence            4799999999999999988777642 11222211  10144558999996 33   44433 223221 12233457788


Q ss_pred             CHHHHHHHHHHHHH-------Hhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDT-------IHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~-------i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++++.++|+.       .++  ++..++++++.+++.+.|+++
T Consensus       281 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  327 (422)
T 3fvs_A          281 PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV  327 (422)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999875       111  234556667777777777664

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.86  E-value=2e-09  Score=81.02  Aligned_cols=106  Identities=16%  Similarity=0.120  Sum_probs=67.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---ccccc-c-cccccc-ccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLK-P-EFVPQQ-AYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~-~-~~~~~~-~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+++++.+.|..... ..++. ..|++  +++|.+| .|   |++.. + .+.+.. ......+ +.
T Consensus       201 ~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~-~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~  277 (409)
T 2gb3_A          201 EIAERHGLFLIVDEVYSEIVFRGEFASA-LSIES-DKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL-AP  277 (409)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCC-TTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC-CC
T ss_pred             HHHHHcCCEEEEECcccccccCCCCCCc-cccCC-CCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccC-CC
Confidence            4799999999999999987666543222 12221 25766  7899996 33   44433 3 333221 1122234 77


Q ss_pred             CHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      |+++++++.++|+...+  +++.++++++.+++.+.|+++
T Consensus       278 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  317 (409)
T 2gb3_A          278 PLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH  317 (409)
T ss_dssp             CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            89999888888854221  345666788888888888775

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.85  E-value=8.3e-10  Score=82.39  Aligned_cols=108  Identities=16%  Similarity=0.081  Sum_probs=65.0

Q ss_pred             ChhhhhCCEEEEccccccccCCC--cchhhhhc-CCCCCCCE---EEEchhhc-cC---ccccc----ccc----ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--KFWCHEHF-DLEESPDI---VTFSKKMQ-LG---GYFLK----PEF----VPQQA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~~~~~~~~-g~~~~pDi---~t~gK~lg-~g---G~~~~----~~~----~~~~~   62 (119)
                      ++|++||+++|+||+++++++.|  .......+ ...  +|+   .+++|++| .|   |++..    +.+    .....
T Consensus       196 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~  273 (394)
T 2ay1_A          196 SILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRI--PEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMA  273 (394)
T ss_dssp             HHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHC--SSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEecCccccccCcccchHHHHHHhhcC--CCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHH
Confidence            47999999999999999886654  22222222 112  443   38899996 34   55432    211    11111


Q ss_pred             cceeeccC-CCHHHHHHHHHHHHHH------h--hhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          63 YRVFNTWM-GDPGKVLLLKGIIDTI------H--NENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        63 ~~~~~T~~-~~p~~~a~a~a~l~~i------~--~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      .....++. .|+++++++.++|+..      +  -++..++++++.+++.+.|+++.
T Consensus       274 ~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  330 (394)
T 2ay1_A          274 FLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLS  330 (394)
T ss_dssp             HHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            11223333 4888888888888754      1  13456667777888888887653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=98.84  E-value=1.8e-09  Score=80.89  Aligned_cols=109  Identities=10%  Similarity=-0.012  Sum_probs=63.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCC----CCCCCEEEEchhhccC---ccccc-cccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDL----EESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~----~~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+++++.+.|.. .....++.    ...+.+.+++|+++.|   |++.. +.+.+. .......+++
T Consensus       190 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~  269 (397)
T 2zyj_A          190 QMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQGADLH  269 (397)
T ss_dssp             HHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHHhhcCC
Confidence            4799999999999999988666642 11222211    1013455899999622   34332 223221 1122334566


Q ss_pred             CCHHHHHHHHHHHHHHh-h--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIH-N--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~-~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .|+++++++.++|+... +  ++..++++++.+++.+.|++.
T Consensus       270 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (397)
T 2zyj_A          270 TPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE  311 (397)
T ss_dssp             CCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999988888776431 1  234445566666777777653

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=98.84  E-value=1.5e-09  Score=81.64  Aligned_cols=108  Identities=12%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---cccc--c-c----ccccccccceee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFL--K-P----EFVPQQAYRVFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~--~-~----~~~~~~~~~~~~   67 (119)
                      ++|++||+++|+||+++++...+.......++ .+.+|++  +++|.++ .|   |++.  . +    .+.+........
T Consensus       201 ~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~  279 (406)
T 1xi9_A          201 NIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARI  279 (406)
T ss_dssp             HHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHh
Confidence            47999999999999998875533333333333 2112555  7899996 33   4544  2 3    333211111111


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++.|+++++++.++|+...+  ++..++++++.+++.+.|+++
T Consensus       280 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  323 (406)
T 1xi9_A          280 RLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI  323 (406)
T ss_dssp             TCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hcCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            156788888888888864322  345667778888888888764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=98.83  E-value=6.3e-10  Score=82.97  Aligned_cols=107  Identities=11%  Similarity=0.051  Sum_probs=63.4

Q ss_pred             ChhhhhCCEEEEccccccccCCC--cchhhhhcCCCCCCC----EEEEchhhc-cC---ccccc----c----ccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--KFWCHEHFDLEESPD----IVTFSKKMQ-LG---GYFLK----P----EFVPQQA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~~~~~~~~g~~~~pD----i~t~gK~lg-~g---G~~~~----~----~~~~~~~   62 (119)
                      ++|++||+++|+||+++++++.|  .......+...  +|    +.+++|++| .|   |++..    +    .+.....
T Consensus       199 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~  276 (396)
T 2q7w_A          199 QLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM--HKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMK  276 (396)
T ss_dssp             HHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH--CSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEecccccccCCccchhHHHHHHHhc--CCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHH
Confidence            47999999999999999886654  22233323211  23    348999996 34   55542    2    2322111


Q ss_pred             cceeeccC-CCHHHHHHHHHHHHHH------hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 YRVFNTWM-GDPGKVLLLKGIIDTI------HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ~~~~~T~~-~~p~~~a~a~a~l~~i------~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .....++. .|+++++++.++|+..      .+  ++..++++++.+++.+.|+++
T Consensus       277 ~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (396)
T 2q7w_A          277 AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK  332 (396)
T ss_dssp             HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11223333 4899988888887643      11  234455677777788877765

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.83  E-value=1e-08  Score=75.74  Aligned_cols=106  Identities=8%  Similarity=-0.040  Sum_probs=60.5

Q ss_pred             ChhhhhCCEEEEccccccc--cCCCc---------chhhhhcCCCCCCCEEEEchhhc----cCccccccc-cccc----
Q psy4800           1 MYEKYHGSALLIDEVQTGG--GPCGK---------FWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPE-FVPQ----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~--Gr~G~---------~~~~~~~g~~~~pDi~t~gK~lg----~gG~~~~~~-~~~~----   60 (119)
                      ++|++||+++|+||+++++  +.++.         .+..+. +++  +.+.+++|.++    .|+++..+. +...    
T Consensus       195 ~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~  271 (397)
T 3f9t_A          195 KIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVD--SITIDPHKMGHCPIPSGGILFKDIGYKRYLDVD  271 (397)
T ss_dssp             HHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCS--EEECCTTTTTCCCSSCEEEEESSGGGGGGTCEE
T ss_pred             HHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCC--eEEEccccccCCCCCceEEEEeCHHHHHhhccC
Confidence            4799999999999999863  33443         222233 433  44457889883    122233222 2111    


Q ss_pred             cccce--------eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 QAYRV--------FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ~~~~~--------~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+...        +++.+.+++++.++++.+....-++..++++++.+++.+.|+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  328 (397)
T 3f9t_A          272 APYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN  328 (397)
T ss_dssp             CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            11111        22223355566666555543333456778889999999999886

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=98.83  E-value=2.6e-09  Score=80.92  Aligned_cols=109  Identities=10%  Similarity=0.045  Sum_probs=66.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhc-CCC-CCCCEEEEchhhc-cC---ccccc-ccc--------ccc-cccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHF-DLE-ESPDIVTFSKKMQ-LG---GYFLK-PEF--------VPQ-QAYR   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~-g~~-~~pDi~t~gK~lg-~g---G~~~~-~~~--------~~~-~~~~   64 (119)
                      ++|++||+++|+||+|+++...+.......+ +.. ..+.+.+|+|++| .|   |++.. +.+        ... ....
T Consensus       225 ~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~  304 (432)
T 3ei9_A          225 EFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRII  304 (432)
T ss_dssp             HHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHH
T ss_pred             HHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHh
Confidence            3699999999999999876443332222212 211 0033558999997 45   55543 233        111 1111


Q ss_pred             eeeccCCCHHHHHHHHHHHHH--Hh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 VFNTWMGDPGKVLLLKGIIDT--IH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~~~T~~~~p~~~a~a~a~l~~--i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...+++.++++.+++.++++.  .+ -++..++++++.+++++.|+++
T Consensus       305 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  352 (432)
T 3ei9_A          305 CTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL  352 (432)
T ss_dssp             HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            223446789998888888752  11 1356677888888888888775

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=98.83  E-value=4.3e-09  Score=78.58  Aligned_cols=104  Identities=13%  Similarity=-0.063  Sum_probs=69.2

Q ss_pred             ChhhhhCCEEEEcccccc-ccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc--cccccc-c-cceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTG-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP--EFVPQQ-A-YRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~--~~~~~~-~-~~~~~T~~~   71 (119)
                      ++|++||+++|+||+|+. +...|....  ...   .+|++  +++|+|+  -+|++..+  .+.+.. + ...+.+.+.
T Consensus       185 ~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~---~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~  259 (407)
T 2dkj_A          185 EIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP---YAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQGGP  259 (407)
T ss_dssp             HHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT---TCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHTTTTCSSC
T ss_pred             HHHHHcCCEEEEEccccccccccCccCC--ccc---cccEEEEeccccCCCCCceEEEECCHHHHHHHHhhhcccccCCC
Confidence            479999999999999974 433343211  011   27888  8999994  24565543  333211 1 123344457


Q ss_pred             CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++..++++.++++.+.+   ++..++++++.+++++.|+++
T Consensus       260 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  300 (407)
T 2dkj_A          260 LEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR  300 (407)
T ss_dssp             CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888988754   467788899999999999875

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=98.81  E-value=3.6e-09  Score=78.54  Aligned_cols=104  Identities=12%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhh-hhcCCCCCCCEEEEchhhc-cC---ccccc-cccccccccceeeccCCCHHH
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCH-EHFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~-~~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~~~~~~~~T~~~~p~~   75 (119)
                      +|+ ||+++|+||+++++++....... +.++..  +.+.+|+|.+| .|   |++.. +.+.+... ....+|+.|+++
T Consensus       174 ~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~-~~~~~~~~~~~~  249 (356)
T 1fg7_A          174 LTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHL--AILRTLSKAFALAGLRCGFTLANEEVINLLM-KVIAPYPLSTPV  249 (356)
T ss_dssp             HHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTE--EEEEESSSTTCCGGGCCEEEEECHHHHHHHH-HHSCSSCSCHHH
T ss_pred             hCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCE--EEEecchHhhcCchhhhEEEEeCHHHHHHHH-HhcCCCCCCHHH
Confidence            466 99999999999987632222221 222222  44559999996 33   55443 22322111 112345788999


Q ss_pred             HHHHHHHHHHHh---hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          76 VLLLKGIIDTIH---NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        76 ~a~a~a~l~~i~---~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+++.++|+...   -++..++++++.+++.+.|+++
T Consensus       250 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  286 (356)
T 1fg7_A          250 ADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI  286 (356)
T ss_dssp             HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            988888886532   1234455667777777777664

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.81  E-value=1.6e-08  Score=75.88  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc--Cccccc-cccccc-cccc-------eee
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL--GGYFLK-PEFVPQ-QAYR-------VFN   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~--gG~~~~-~~~~~~-~~~~-------~~~   67 (119)
                      ++|++||+++|+||+++ +|...    .......  +|+++++  |.+|.  .|++.. +.+... .+..       ...
T Consensus       187 ~l~~~~~~~li~Dea~~-~~~~~----~~~~~~~--~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (423)
T 3lvm_A          187 EMCRARGIIYHVDATQS-VGKLP----IDLSQLK--VDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMR  259 (423)
T ss_dssp             HHHHHHTCEEEEECTTT-TTTSC----CCTTTSC--CSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTC
T ss_pred             HHHHHcCCEEEEEhhhh-cCCCC----cChhhcC--CCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCccccccc
Confidence            47999999999999975 33221    1112223  8998766  97752  244332 222221 1111       123


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +...++..+++..++++.+++  ++..++++++.+++++.|+++
T Consensus       260 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (423)
T 3lvm_A          260 SGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI  303 (423)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            445688888888899998866  467777888888888888665

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=98.80  E-value=8.2e-09  Score=76.63  Aligned_cols=106  Identities=14%  Similarity=0.075  Sum_probs=67.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhh-hhcC-CCCCCCEEEEchhhc-cC---ccccc-cccccccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCH-EHFD-LEESPDIVTFSKKMQ-LG---GYFLK-PEFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~-~~~g-~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~~~~~~~~~T~~~~p   73 (119)
                      ++|+.+++++|+||+|+++++....... +.++ ..  +++.+++|++| .|   |++.. +.+.+... ....+|+.|+
T Consensus       188 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~-~~~~~~~~~~  264 (369)
T 3cq5_A          188 RIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKL--VVSRTMSKAFDFAGGRLGYFVANPAFIDAVM-LVRLPYHLSA  264 (369)
T ss_dssp             HHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTE--EEEEESSSTTSCGGGCCEEEEECTHHHHHHH-TTSCTTCSCH
T ss_pred             HHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCE--EEEEechHhcCCcccceEEEEeCHHHHHHHH-HcCCCCCCCH
Confidence            3688889999999999877543222221 2233 22  56679999996 33   44443 22322111 1123567899


Q ss_pred             HHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 GKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++++.++|+..+. ++..++++++.+++.+.|++.
T Consensus       265 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  301 (369)
T 3cq5_A          265 LSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL  301 (369)
T ss_dssp             HHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999998875321 356677788888888888763

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.80  E-value=2.8e-08  Score=73.48  Aligned_cols=102  Identities=16%  Similarity=0.025  Sum_probs=64.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCccccc-ccccc----cc-c-------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFLK-PEFVP----QQ-A-------   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~~-~~~~~----~~-~-------   62 (119)
                      ++|++||+++|+||+|+ +|  +..+..+.++    +|+++++  |+++   +.|++.. +.+.+    .. .       
T Consensus       172 ~l~~~~~~~li~De~~~-~g--~~~~~~~~~~----~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  244 (393)
T 3kgw_A          172 ELCHRYQCLLLVDSVAS-LG--GVPIYMDQQG----IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTD  244 (393)
T ss_dssp             HHHHHTTCEEEEECTTT-TT--TSCCCTTTTT----CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTC
T ss_pred             HHHHHcCCEEEEECCcc-cc--CcccchhhcC----CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeec
Confidence            48999999999999976 32  1122222222    6887666  9883   1233332 22211    00 0       


Q ss_pred             ------------cceeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ------------YRVFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ------------~~~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                  ...+.++..++.++++..++++.+.+   ++..++++++.+++.+.|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  306 (393)
T 3kgw_A          245 ITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM  306 (393)
T ss_dssp             HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                        00122345688888888899998866   456778899999999999886

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=98.79  E-value=4.6e-09  Score=78.62  Aligned_cols=104  Identities=16%  Similarity=0.132  Sum_probs=59.7

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEE--Echhhc--cCcccccc----cccccccc-ceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LGGYFLKP----EFVPQQAY-RVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~gG~~~~~----~~~~~~~~-~~~~T~~   70 (119)
                      ++|++||+++|+||+|. |+.+.|...     .....+|+++  ++|+++  .||++..+    .+...... .+.++++
T Consensus       191 ~l~~~~~~~li~De~~~~~~~~~~~~~-----~~~~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  265 (420)
T 3gbx_A          191 EIADSIGAYLFVDMAHVAGLIAAGVYP-----NPVPHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQG  265 (420)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHHTTSSC-----CSTTTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHHC----C
T ss_pred             HHHHHcCCEEEEECCcchhceecccCC-----cccccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCCC
Confidence            47999999999999974 554444321     1112389986  669994  36777654    33322111 1222223


Q ss_pred             CC-HHHHHHHHHHHHHH-hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GD-PGKVLLLKGIIDTI-HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~-p~~~a~a~a~l~~i-~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++ +...++..+++..+ ++  +++.++++++.+++++.|++.
T Consensus       266 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (420)
T 3gbx_A          266 GPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR  308 (420)
T ss_dssp             CCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Confidence            32 33333333344433 22  356778889999999999864

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=98.78  E-value=5.1e-09  Score=80.41  Aligned_cols=107  Identities=11%  Similarity=0.034  Sum_probs=64.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc----hhhhhcCCCCCCCEEEEchhhccC---ccccc-cccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF----WCHEHFDLEESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~----~~~~~~g~~~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+++++...|..    ...+..+..  +++.+|+|.++.|   |++.. +.+.+. ......++++.
T Consensus       244 ~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~v--i~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~  321 (448)
T 3aow_A          244 ELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRV--IYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCT  321 (448)
T ss_dssp             HHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCE--EEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCE--EEEccchhhccccccEEEEEeCHHHHHHHHHHHHHhcCCC
Confidence            4799999999999999877555542    222222322  5677999999633   44443 233321 11122346677


Q ss_pred             CHHHHHHHHHHHHHH--hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTI--HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i--~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      |+++.+++.++|+..  .+  ++..++++++.+++.+.|++.
T Consensus       322 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  363 (448)
T 3aow_A          322 NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF  363 (448)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899998888888642  11  233444556666777777653

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=98.78  E-value=6.3e-09  Score=78.68  Aligned_cols=106  Identities=15%  Similarity=0.094  Sum_probs=66.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch----hhhhc----CCCCCCC----EEEEchhhc-cC---ccccc--cccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW----CHEHF----DLEESPD----IVTFSKKMQ-LG---GYFLK--PEFVPQQA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~----~~~~~----g~~~~pD----i~t~gK~lg-~g---G~~~~--~~~~~~~~   62 (119)
                      ++|++||+++|+||++++++..|..+    .....    ++.  +|    +.+++|++| .|   |++..  +.+.+...
T Consensus       215 ~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~  292 (428)
T 1iay_A          215 SFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCN--KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCAR  292 (428)
T ss_dssp             HHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSC--TTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHH
T ss_pred             HHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCC--CCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHH
Confidence            37899999999999999865554321    11111    223  67    459999996 33   44433  22322111


Q ss_pred             cceeeccCCCHHHHHHHHHHHHHHh---h--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 YRVFNTWMGDPGKVLLLKGIIDTIH---N--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ~~~~~T~~~~p~~~a~a~a~l~~i~---~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                       ....++..|+++.+++.++|+..+   +  ++..++++++.+++.+.|+++
T Consensus       293 -~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (428)
T 1iay_A          293 -KMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             -HHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             112345678998888888876432   1  345667788888888888775

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=98.77  E-value=5.5e-09  Score=78.51  Aligned_cols=108  Identities=14%  Similarity=0.050  Sum_probs=65.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCc----chhhhhcCCCCCCC-E--EEEchhhccC----ccccc-c--ccccc----cc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK----FWCHEHFDLEESPD-I--VTFSKKMQLG----GYFLK-P--EFVPQ----QA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~----~~~~~~~g~~~~pD-i--~t~gK~lg~g----G~~~~-~--~~~~~----~~   62 (119)
                      ++|++||+++|+||+++++...|.    .+. ....+...++ +  .+++|+++..    |++.. +  .+.+.    ..
T Consensus       204 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~  282 (416)
T 1bw0_A          204 RLAEELRLPLFSDEIYAGMVFKGKDPNATFT-SVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLK  282 (416)
T ss_dssp             HHHHHHTCCEEEECTTTTCBCCSSCTTCCCC-CTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHH
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCCCCcc-CHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHH
Confidence            479999999999999998755554    211 1112221122 2  3899997533    44442 2  12211    11


Q ss_pred             cceeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 YRVFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ~~~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .....+++.|+++++++.++|+.+.+   ++..++++++.+++.+.|+++
T Consensus       283 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (416)
T 1bw0_A          283 RVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC  332 (416)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            11234778899999999999885322   245566777777777777654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=98.77  E-value=3.4e-08  Score=72.23  Aligned_cols=102  Identities=15%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cC-ccccc-cccccc----cccce-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LG-GYFLK-PEFVPQ----QAYRV-----   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~g-G~~~~-~~~~~~----~~~~~-----   65 (119)
                      ++|++||+++|+||+|+ +|.....  .+  ...  +|++  +++|+++  .| |++.. +.+.+.    ...+.     
T Consensus       155 ~l~~~~~~~li~Dea~~-~~~~~~~--~~--~~~--~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 1m32_A          155 ALAHRYGKTYIVDAMSS-FGGIPMD--IA--ALH--IDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYA  227 (366)
T ss_dssp             HHHHHHTCEEEEECTTT-TTTSCCC--TT--TTT--CSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHH
T ss_pred             HHHHHcCCEEEEECCcc-ccCcCcc--cc--ccC--ccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHH
Confidence            47999999999999986 4443211  11  122  7887  5789883  23 55543 222221    11110     


Q ss_pred             ----------eeccCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 ----------FNTWMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ----------~~T~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                                ...+..|+.+++++.++++.+.+.    +..++++++.+++++.|+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~  285 (366)
T 1m32_A          228 QWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL  285 (366)
T ss_dssp             HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence                      013578899999999999988653    46778889999999999875

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=98.76  E-value=1.3e-08  Score=75.65  Aligned_cols=101  Identities=17%  Similarity=0.086  Sum_probs=68.6

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc----hhhcc---Cccccc--cccccc----cc----
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS----KKMQL---GGYFLK--PEFVPQ----QA----   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg~---gG~~~~--~~~~~~----~~----   62 (119)
                      ++|++||+++|+||+|+ |....|+     ..+..  .|++++|    |.+++   ||+++.  +.+.+.    ..    
T Consensus       144 ~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~--~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~  216 (367)
T 3nyt_A          144 AIASKYGIPVIEDAAQSFGASYKGK-----RSCNL--STVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQD  216 (367)
T ss_dssp             HHHHHTTCCBEEECTTTTTCEETTE-----ETTSS--SSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE
T ss_pred             HHHHHcCCEEEEECccccCCeECCe-----eccCC--CCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCC
Confidence            47999999999999986 4322232     22333  4999887    99963   455553  222110    00    


Q ss_pred             -----cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          63 -----YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        63 -----~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                           ...+.++..+++.++++++.++.++  ++.++.+++.+++++.|+++.
T Consensus       217 ~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~L~~~~  267 (367)
T 3nyt_A          217 RRYHHIRVGVNSRLDTLQAAILLPKLEIFE--EEIALRQKVAAEYDLSLKQVG  267 (367)
T ss_dssp             ETTEECSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCceeeccCcCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC
Confidence                 1123477899999999999988774  466778888999999998873

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=98.74  E-value=1.6e-08  Score=75.95  Aligned_cols=107  Identities=16%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCc---chhhh-hcCCCCCCCEE---EEchhhc-cC---ccc---ccc-c----ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK---FWCHE-HFDLEESPDIV---TFSKKMQ-LG---GYF---LKP-E----FVPQQ   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~---~~~~~-~~g~~~~pDi~---t~gK~lg-~g---G~~---~~~-~----~~~~~   61 (119)
                      ++|++||+++|+||++.+++..+.   ..... ..+..  ++++   +|||.+| .|   |++   ..+ .    +....
T Consensus       210 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~  287 (409)
T 4eu1_A          210 DVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMV--PNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQL  287 (409)
T ss_dssp             HHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTS--SCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhC--CcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHH
Confidence            479999999999999988865552   22222 22443  5654   8999986 45   663   332 3    33221


Q ss_pred             ccc-eeeccCCCHHHHHHHHHHHHHH-------h-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 AYR-VFNTWMGDPGKVLLLKGIIDTI-------H-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~~~-~~~T~~~~p~~~a~a~a~l~~i-------~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ... ..+++..++++..++.++|+..       + -++.+++++++.+++.+.|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (409)
T 4eu1_A          288 ALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC  344 (409)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111 1345456788888887777632       1 1345667788888888888775

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=98.73  E-value=8.8e-08  Score=70.58  Aligned_cols=101  Identities=19%  Similarity=0.122  Sum_probs=67.4

Q ss_pred             ChhhhhC--CEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc-cC-ccccc-ccc--cccccc----ceee
Q psy4800           1 MYEKYHG--SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ-LG-GYFLK-PEF--VPQQAY----RVFN   67 (119)
Q Consensus         1 ~l~~~~~--~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg-~g-G~~~~-~~~--~~~~~~----~~~~   67 (119)
                      ++|++||  +++|+||+|+ +|....  ..+  ...  +|+++++  |.+| .| |++.. +.+  ......    ....
T Consensus       163 ~l~~~~~~~~~li~Dea~~-~~~~~~--~~~--~~~--~di~~~s~sK~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~  235 (384)
T 1eg5_A          163 RIVKKKNKETLVHVDAVQT-IGKIPF--SLE--KLE--VDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLR  235 (384)
T ss_dssp             HHHHHHCTTCEEEEECTTT-TTTSCC--CCT--TTC--CSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTB
T ss_pred             HHHHhcCCceEEEEEhhhh-cCCccc--Cch--hcC--CCEEEecHHHhcCCCceEEEEEcCCCccccccccCccccccc
Confidence            4799999  9999999976 654321  111  223  8999777  9886 33 55543 233  221111    1124


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ++..++++++++.++|+.+.+  ++..++++++.+++.+.|++
T Consensus       236 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  278 (384)
T 1eg5_A          236 SGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN  278 (384)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC
Confidence            557889999999999988654  35677788889999998876

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=98.72  E-value=1.2e-08  Score=76.36  Aligned_cols=104  Identities=17%  Similarity=0.109  Sum_probs=59.0

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc--cccccccc--ceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP--EFVPQQAY--RVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~--~~~~~~~~--~~~~T~~~   71 (119)
                      ++|++||+++|+||+|. |+...|...     +....+|++  +++|+++  -||+++..  .+......  ..+.+.+.
T Consensus       194 ~l~~~~~~~li~De~~~~g~~~~~~~~-----~~~~~~di~~~s~sK~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  268 (425)
T 3ecd_A          194 AIADSVGAKLMVDMAHIAGVIAAGRHA-----NPVEHAHVVTSTTHKTLRGPRGGFVLTNDEEIAKKINSAVFPGLQGGP  268 (425)
T ss_dssp             HHHHHHTCEEEEECGGGHHHHHTTSSC-----CGGGTCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHC-----CC
T ss_pred             HHHHHcCCEEEEECcChHhhhhccccc-----CchhcCcEEEecCCcccCCCCcEEEEeCCHHHHHHHHhhhCccccCCc
Confidence            48999999999999974 554444321     111126887  5669994  25666543  23221111  11112123


Q ss_pred             CH-HHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DP-GKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p-~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++ ..++++.+..+.+++  +++.++++++.+++++.|++.
T Consensus       269 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (425)
T 3ecd_A          269 LMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG  309 (425)
T ss_dssp             CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            33 344444444444433  367788899999999999874

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.72  E-value=2.9e-08  Score=75.65  Aligned_cols=100  Identities=15%  Similarity=0.041  Sum_probs=63.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc--c-cc--------ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK--P-EF--------VPQQA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~--~-~~--------~~~~~   62 (119)
                      ++|++||+++|+||+|+++|..+...     +..  +|++  +++|.+++     ||++..  + .+        .....
T Consensus       168 ~~a~~~g~~livD~~~~~~g~~~~~~-----~~~--~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~  240 (421)
T 2ctz_A          168 QAAREKGVALIVDNTFGMGGYLLRPL-----AWG--AALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQP  240 (421)
T ss_dssp             HHHHHHTCEEEEECGGGGGGTSCCGG-----GGT--CSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBG
T ss_pred             HHHHHcCCEEEEECCcccccccCCcc-----ccC--CeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccc
Confidence            47999999999999997777655443     223  8988  89999963     334443  1 11        11000


Q ss_pred             ccee-----------------------eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 YRVF-----------------------NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ~~~~-----------------------~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+.                       .....+|+.+++++..++.+.  ...++..++.+++.+.|++.
T Consensus       241 g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~  308 (421)
T 2ctz_A          241 GYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ  308 (421)
T ss_dssp             GGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC
Confidence            0000                       122678999888888887764  23445557778888888763

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=98.70  E-value=1.6e-08  Score=78.54  Aligned_cols=105  Identities=11%  Similarity=-0.032  Sum_probs=56.3

Q ss_pred             ChhhhhCCEEEEccccccc-----cCCCc---chhhhhcCCCCCCCEE--EEchhhcc---Cccc-cccc-cccc----c
Q psy4800           1 MYEKYHGSALLIDEVQTGG-----GPCGK---FWCHEHFDLEESPDIV--TFSKKMQL---GGYF-LKPE-FVPQ----Q   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~-----Gr~G~---~~~~~~~g~~~~pDi~--t~gK~lg~---gG~~-~~~~-~~~~----~   61 (119)
                      ++|++||++||+||+|+|+     +++|.   .+.....+    .|++  +++|.+.+   .|++ ..+. +...    .
T Consensus       263 ~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g----~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~  338 (514)
T 3mad_A          263 ALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEG----VTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIA  338 (514)
T ss_dssp             HHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTT----CCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEE
T ss_pred             HHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCC----CcEEEECchhccCCCCCeEEEEEeCHHHhccccccc
Confidence            4899999999999999875     34443   22233334    4666  45598621   1222 2221 1110    0


Q ss_pred             c-----cceeecc--CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 A-----YRVFNTW--MGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~-----~~~~~T~--~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .     .....++  ..+.....+..++++.+.+   ++..+++.++.+++++.|+++
T Consensus       339 ~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  396 (514)
T 3mad_A          339 ADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI  396 (514)
T ss_dssp             SSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            0     0000111  1222233344455555543   456778888999999999874

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=98.70  E-value=2.9e-08  Score=73.73  Aligned_cols=102  Identities=12%  Similarity=0.043  Sum_probs=61.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC-cccccc-ccccc-cccce---------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG-GYFLKP-EFVPQ-QAYRV---------   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g-G~~~~~-~~~~~-~~~~~---------   65 (119)
                      ++|++||+++|+||+|+ +|...  ......  .  +|++  +++|.+| .| |++..+ .+.+. .+...         
T Consensus       188 ~l~~~~~~~li~D~~~~-~g~~~--~~~~~~--~--~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
T 1kmj_A          188 TLAHQHGAKVLVDGAQA-VMHHP--VDVQAL--D--CDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVS  260 (406)
T ss_dssp             HHHHHTTCEEEEECTTT-TTTSC--CCHHHH--T--CSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEE
T ss_pred             HHHHHcCCEEEEEchhh-cCCCC--Cccccc--C--CCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecc
Confidence            47999999999999986 44432  112222  3  7886  6999986 34 555432 22211 00000         


Q ss_pred             ------------eeccCCCHHHHHHHH-HHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 ------------FNTWMGDPGKVLLLK-GIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ------------~~T~~~~p~~~a~a~-a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                  ..+.+.+++...+++ ++++.+++.   ++.++++++.+++.+.|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  320 (406)
T 1kmj_A          261 LSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV  320 (406)
T ss_dssp             TTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC
Confidence                        111234555555555 788888653   56677888888888888764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=98.69  E-value=5.2e-08  Score=72.43  Aligned_cols=102  Identities=18%  Similarity=0.088  Sum_probs=67.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc-C--ccccc-cccccc-------cccce--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL-G--GYFLK-PEFVPQ-------QAYRV--   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~-g--G~~~~-~~~~~~-------~~~~~--   65 (119)
                      ++|++||+++|+||+++ +|.....  .  ....  +|+++++  |++++ +  |++.. +.+.+.       .....  
T Consensus       183 ~l~~~~~~~li~Dea~~-~g~~~~~--~--~~~~--~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  255 (393)
T 1vjo_A          183 ELCREFGTLLLVDTVTS-LGGVPIF--L--DAWG--VDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLD  255 (393)
T ss_dssp             HHHHHHTCEEEEECTTT-TTTSCCC--T--TTTT--CSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTC
T ss_pred             HHHHHcCCEEEEECCcc-ccCcCCc--c--cccC--ccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecC
Confidence            47999999999999987 6643211  1  1233  8999666  99852 2  34332 222211       01111  


Q ss_pred             -----------eecc-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          66 -----------FNTW-MGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 -----------~~T~-~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                 ..++ +.|+++++++.++|+.+.+   ++..++++++.+++.+.|+++
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  314 (393)
T 1vjo_A          256 MNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI  314 (393)
T ss_dssp             HHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Confidence                       2233 6789999999999998754   356778899999999999875

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=98.67  E-value=1.3e-08  Score=76.47  Aligned_cols=107  Identities=14%  Similarity=0.078  Sum_probs=64.8

Q ss_pred             ChhhhhCCEEEEccccccccCCC---cchhhhh-cCCCCCC---C---EEEEchhhcc-C---cccc--c-----c-c--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG---KFWCHEH-FDLEESP---D---IVTFSKKMQL-G---GYFL--K-----P-E--   56 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G---~~~~~~~-~g~~~~p---D---i~t~gK~lg~-g---G~~~--~-----~-~--   56 (119)
                      ++|++||+++|+||++.+++..|   ....... ....  +   +   +.+++|.+|. |   |++.  .     + .  
T Consensus       203 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~  280 (412)
T 1yaa_A          203 DAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL--STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIK  280 (412)
T ss_dssp             HHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT--TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHH
T ss_pred             HHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcC--CCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHH
Confidence            37999999999999998885544   2212211 1112  3   2   3389999963 4   5554  3     2 2  


Q ss_pred             --ccccccc-ceeeccCCCHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          57 --FVPQQAY-RVFNTWMGDPGKVLLLKGIIDTIH--------NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        57 --~~~~~~~-~~~~T~~~~p~~~a~a~a~l~~i~--------~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                        +...... ....+...++++.+++.++|+...        -++..++++++.+++.+.|+++
T Consensus       281 ~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (412)
T 1yaa_A          281 PAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              3322111 112233458888888888887542        1345666777888888888765

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=98.66  E-value=1.6e-08  Score=77.38  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=61.2

Q ss_pred             ChhhhhCCEEEEcccc-ccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-ccccc-cccceeeccCC-C
Q psy4800           1 MYEKYHGSALLIDEVQ-TGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVPQ-QAYRVFNTWMG-D   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~-tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~~-~~~~~~~T~~~-~   72 (119)
                      ++|++||++||+||+| +|+...|...     +.....|++  +++|+++  -||++..+ .+.+. .......++++ +
T Consensus       207 ~l~~~~g~lli~Dea~~~g~~~~g~~~-----~~~~~~di~~~s~sK~l~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~  281 (447)
T 3h7f_A          207 SIADEVGAKLLVDMAHFAGLVAAGLHP-----SPVPHADVVSTTVHKTLGGGRSGLIVGKQQYAKAINSAVFPGQQGGPL  281 (447)
T ss_dssp             HHHHHHTCEEEEECTTTHHHHHTTSSC-----CSTTTCSEEEEESSGGGCCCSCEEEEECGGGHHHHHHHHTTTTCSSCC
T ss_pred             HHHHHcCCEEEEECCchhhhhcCCCCC-----CCCCCCcEEEecCCcCCCCCCeEEEEECHHHHHHHhhhcCCcccCCcc
Confidence            4899999999999998 4554444321     111125777  7799995  26776543 33321 11111122232 2


Q ss_pred             HHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +..++++.+++..+.+   +++.+++.++.+++.+.|++.
T Consensus       282 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          282 MHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334555555655543   246778889999999998765

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=98.65  E-value=8.1e-08  Score=70.92  Aligned_cols=102  Identities=16%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc--C-ccccc-ccccccc-------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL--G-GYFLK-PEFVPQQ-------------   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~--g-G~~~~-~~~~~~~-------------   61 (119)
                      ++|++||+++|+||++. +|...  ....  ...  +|+++++  |++++  | |++.. +.+.+..             
T Consensus       170 ~l~~~~~~~li~D~a~~-~~~~~--~~~~--~~~--~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~  242 (386)
T 2dr1_A          170 KVAKEHDKLVFVDAVSA-MGGAD--IKFD--KWG--LDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIP  242 (386)
T ss_dssp             HHHHHTTCEEEEECTTT-BTTBC--CCTT--TTT--CSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHH
T ss_pred             HHHHHcCCeEEEEcccc-ccCcc--cccc--ccC--CcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHH
Confidence            47999999999999975 43321  1111  122  7998766  99962  2 44443 2222110             


Q ss_pred             ---cc---ceeeccCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          62 ---AY---RVFNTWMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ---~~---~~~~T~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                         ..   ....+++.|+++++++.++|+.+.+.    +..++++++.+++.+.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~  300 (386)
T 2dr1_A          243 LYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI  300 (386)
T ss_dssp             HHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence               00   12345578899999999999988654    57778899999999999875

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=98.65  E-value=2.1e-07  Score=69.63  Aligned_cols=102  Identities=9%  Similarity=0.047  Sum_probs=66.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc---cC-ccccc-cccccc-cc---c------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ---LG-GYFLK-PEFVPQ-QA---Y------   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg---~g-G~~~~-~~~~~~-~~---~------   63 (119)
                      ++|++||+++|+||+|+ +|.....  .+.++    +|++++  +|.+.   .+ |++.. +.+.+. .+   .      
T Consensus       189 ~l~~~~~~~li~D~a~~-~g~~~~~--~~~~~----~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~  261 (416)
T 1qz9_A          189 ALSHECGALAIWDLAHS-AGAVPVD--LHQAG----ADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSR  261 (416)
T ss_dssp             HHHHHHTCEEEEECTTT-TTTSCCC--HHHHT----CSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCT
T ss_pred             HHHHHcCCEEEEEcccc-ccCcCCC--hhhcC----CCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCcccc
Confidence            47999999999999985 5544321  22232    798866  59972   23 44432 223211 11   0      


Q ss_pred             --------------ceeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          64 --------------RVFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 --------------~~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                    ..+.....|+.+++++.++++.+.+   +++.++++++.+++++.|+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  324 (416)
T 1qz9_A          262 QFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQR  324 (416)
T ss_dssp             TSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence                          0112224688888888899998864   356788899999999999876

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=98.63  E-value=7.6e-08  Score=71.38  Aligned_cols=101  Identities=14%  Similarity=0.038  Sum_probs=65.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhcc---Ccccccc--cccc-------c----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQL---GGYFLKP--EFVP-------Q----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg~---gG~~~~~--~~~~-------~----   60 (119)
                      ++|++||+++|+||+|+ +|..   +..+..+..  +|+++++    |++++   ||++...  .+.+       .    
T Consensus       145 ~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~--~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~  218 (373)
T 3frk_A          145 RIAKKYNLKLIEDAAQA-HGSL---YKGMKVGSL--GDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK  218 (373)
T ss_dssp             HHHHHHTCEEEEECTTC-TTCE---ETTEETTSS--SSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSB
T ss_pred             HHHHHcCCEEEEECCcc-cCCE---ECCEecccc--ccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCccc
Confidence            47999999999999986 2211   122334544  7999888    99963   4555532  1211       0    


Q ss_pred             --cccceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 --QAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 --~~~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                        .....+.++..+++.++++...++.++  +..++.+++.+++++.|+++
T Consensus       219 ~~~~~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  267 (373)
T 3frk_A          219 KYHHIYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYIAGINNP  267 (373)
T ss_dssp             TTBCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHCCCT
T ss_pred             CCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence              011123455778998888877776654  46677888888888888765

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.62  E-value=9.3e-08  Score=71.35  Aligned_cols=102  Identities=15%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccccc-cccc----ccccc-------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP-EFVP----QQAYR-------   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~-~~~~----~~~~~-------   64 (119)
                      ++|++||+++|+||+|+ +|....  ....++    +|+++++  |.+|  +.|++..+ .+.+    .....       
T Consensus       193 ~l~~~~~~~li~D~a~~-~~~~~~--~~~~~~----~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (420)
T 1t3i_A          193 QLAHQAGAKVLVDACQS-APHYPL--DVQLID----CDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVF  265 (420)
T ss_dssp             HHHHHTTCEEEEECTTT-TTTSCC--CHHHHT----CSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEEC
T ss_pred             HHHHHcCCEEEEEhhhc-cCCccC--chhhcC----CCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCcccccc
Confidence            47999999999999975 444321  122233    7988766  9775  23555432 2221    11000       


Q ss_pred             ----------eeeccCCCHHHHHHHHH-HHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 ----------VFNTWMGDPGKVLLLKG-IIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ----------~~~T~~~~p~~~a~a~a-~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                ...+++.+++...++++ +++.+++   +++.++.+++.+++.+.|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  324 (420)
T 1t3i_A          266 FDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI  324 (420)
T ss_dssp             SSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence                      00122455565555554 7888765   456777888899999998875

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=98.62  E-value=3.1e-08  Score=74.86  Aligned_cols=105  Identities=12%  Similarity=0.021  Sum_probs=65.4

Q ss_pred             Chhhh-----hCCEEEEccccccccCCCcc--hhh-hhcCCCCCCC------EEEEchhhc-cC---ccccc---c-ccc
Q psy4800           1 MYEKY-----HGSALLIDEVQTGGGPCGKF--WCH-EHFDLEESPD------IVTFSKKMQ-LG---GYFLK---P-EFV   58 (119)
Q Consensus         1 ~l~~~-----~~~lli~DEv~tG~Gr~G~~--~~~-~~~g~~~~pD------i~t~gK~lg-~g---G~~~~---~-~~~   58 (119)
                      ++|++     ||+++|+||+++++...|..  ... ...+..  ++      +.+++|.+| .|   |++..   + .+.
T Consensus       216 ~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~  293 (430)
T 2x5f_A          216 EAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLH--SNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTK  293 (430)
T ss_dssp             HHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTC--CTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHH
T ss_pred             HHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhcc--CCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHH
Confidence            37889     99999999999987665542  111 222322  44      348999996 33   45443   2 232


Q ss_pred             ccc-ccce----eeccCCCHHHHHHHHHHHH----HHhh-hcHHHHHHHHHHHHHHHHH
Q psy4800          59 PQQ-AYRV----FNTWMGDPGKVLLLKGIID----TIHN-ENLLDRVQKTGDILLNVRL  107 (119)
Q Consensus        59 ~~~-~~~~----~~T~~~~p~~~a~a~a~l~----~i~~-~~~~~~~~~~g~~l~~~L~  107 (119)
                      +.. ....    .++++.|+++++++.++|+    ++++ ++..++++++.+++.+.|+
T Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          294 EVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211 1111    2567889999999999988    3332 2355667777777777776

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=98.62  E-value=8.2e-08  Score=70.87  Aligned_cols=104  Identities=12%  Similarity=0.025  Sum_probs=59.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC--cccc-cccccc----c-cccc-------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG--GYFL-KPEFVP----Q-QAYR-------   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g--G~~~-~~~~~~----~-~~~~-------   64 (119)
                      ++|++||+++|+||+|++.++.   +..+.++++  +.+.+++|+++ ..  |++. .+.+..    . ...+       
T Consensus       168 ~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d--~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (376)
T 3f0h_A          168 EFCKKNNMFFVCDCVSAFLADP---FNMNECGAD--VMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDA  242 (376)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSC---CCHHHHTCS--EEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHH
T ss_pred             HHHHHcCCEEEEEcCccccCcc---ccccccCcc--EEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHH
Confidence            4799999999999998755443   233445543  44446779995 12  2322 222211    0 0110       


Q ss_pred             ------eeeccCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 ------VFNTWMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ------~~~T~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                            ..+.+..+..+++++.++++.++++    +..++.+++.+++++.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (376)
T 3f0h_A          243 LKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL  297 (376)
T ss_dssp             HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence                  1123345555667788889888764    34445556666666666543

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=98.59  E-value=5.9e-08  Score=71.41  Aligned_cols=101  Identities=10%  Similarity=0.017  Sum_probs=67.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc---Cccccc-cccccc--cccce--ee---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL---GGYFLK-PEFVPQ--QAYRV--FN---   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~---gG~~~~-~~~~~~--~~~~~--~~---   67 (119)
                      ++|++||+++|+||+|+. |..+.  ....++    +|++  +++|++++   .|++.. +.+.+.  .+...  ..   
T Consensus       171 ~~~~~~~~~li~D~a~~~-~~~~~--~~~~~~----~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  243 (371)
T 2e7j_A          171 KVCSEYDVPLLVNGAYAI-GRMPV--SLKEIG----ADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVE  243 (371)
T ss_dssp             HHHHTTTCCEEEECTTTB-TTBCC--CHHHHT----CSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGG
T ss_pred             HHHHHcCCeEEEECcccc-CCCCC--ChhhcC----CCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccc
Confidence            479999999999999764 34332  122333    6776  56999852   244432 333222  11111  12   


Q ss_pred             --ccCCCHHHHHHHHHHHHHHhhhcHHHHH--HHHHHHHHHHHHhh
Q psy4800          68 --TWMGDPGKVLLLKGIIDTIHNENLLDRV--QKTGDILLNVRLGL  109 (119)
Q Consensus        68 --T~~~~p~~~a~a~a~l~~i~~~~~~~~~--~~~g~~l~~~L~~l  109 (119)
                        ++..++..++++.++++.+++ ++.+++  +++.+++.+.|+++
T Consensus       244 ~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~  288 (371)
T 2e7j_A          244 LLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL  288 (371)
T ss_dssp             GTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence              556788888888899998876 667788  88999999999875

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=98.59  E-value=1.3e-07  Score=71.36  Aligned_cols=102  Identities=16%  Similarity=-0.022  Sum_probs=66.8

Q ss_pred             ChhhhhC----------CEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc-cCccccc-ccc-cc-cccc-
Q psy4800           1 MYEKYHG----------SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ-LGGYFLK-PEF-VP-QQAY-   63 (119)
Q Consensus         1 ~l~~~~~----------~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg-~gG~~~~-~~~-~~-~~~~-   63 (119)
                      ++|++|+          +++|+||+| ++|+....  ....  .  +|+++  ++|.+| ..|++.. +.+ .. ..+. 
T Consensus       199 ~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~~~--~~~~--~--~d~~~~s~~K~~g~~~G~~~~~~~~~~~~~~~~~  271 (432)
T 3a9z_A          199 RRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRRVD--VEDL--G--VDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPML  271 (432)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSCCC--HHHH--C--CSEEEEEGGGTTCCSCEEEEETTBTTTBCCCCSC
T ss_pred             HHHHhcCcccccccCCceEEEEEchh-hhCCcccC--hhhc--C--CCEEEEehhHhcCCcceEEEEccccccCCcCcee
Confidence            4789999          999999998 56554211  1112  2  78875  499875 3455443 222 11 1111 


Q ss_pred             ------ceeeccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          64 ------RVFNTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 ------~~~~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                            ..+.++..|+.+++++.++++.+++  ++..++++++.+++.+.|+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~  325 (432)
T 3a9z_A          272 FGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAE  325 (432)
T ss_dssp             CSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence                  1123446788888888899998765  467778889999999999875

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.59  E-value=6.8e-08  Score=72.26  Aligned_cols=104  Identities=14%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcccccc--cccccc-c-cceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLKP--EFVPQQ-A-YRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~~--~~~~~~-~-~~~~~T~~~   71 (119)
                      ++|++||+++|+||+|. |+-..|.     +.......|+++++  |+++  -||+++..  .+.+.. . ...+.+.+.
T Consensus       186 ~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  260 (417)
T 3n0l_A          186 EIADEIGAYLFADIAHIAGLVVAGE-----HPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGP  260 (417)
T ss_dssp             HHHHHHTCEEEEECTTTHHHHHTTS-----SCCCTTTCSEEEEESSTTTCSCSCEEEEESCHHHHHHHHHHHTTTTCSSC
T ss_pred             HHHHHcCCEEEEECccchhhhhccc-----CCCccccceEEEeeCccccCCCCeeEEEECCHHHHHHHhhhhCCcccCCc
Confidence            48999999999999974 3211111     11111126898766  9984  25666543  333221 1 112223345


Q ss_pred             CHHHHHHHHHHHHHHh-h--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIH-N--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~-~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++..+++..++++... +  +++.++++++.+++.+.|++.
T Consensus       261 ~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  301 (417)
T 3n0l_A          261 LMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR  301 (417)
T ss_dssp             CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            6777777777777643 2  356677888888999988873

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=98.58  E-value=2.7e-07  Score=68.16  Aligned_cols=102  Identities=14%  Similarity=0.065  Sum_probs=63.0

Q ss_pred             Chhh----hhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cC-ccccc-cccccc-ccc------
Q psy4800           1 MYEK----YHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LG-GYFLK-PEFVPQ-QAY------   63 (119)
Q Consensus         1 ~l~~----~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~g-G~~~~-~~~~~~-~~~------   63 (119)
                      ++|+    +||+++|+||+|+ +|.....  .  ....  +|+++  ++|.+.  .| |++.. +.+.+. .+.      
T Consensus       178 ~l~~~~~~~~~~~li~Dea~~-~g~~~~~--~--~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~  250 (390)
T 1elu_A          178 AVCRRHQGNYPVRVLVDGAQS-AGSLPLD--F--SRLE--VDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRS  250 (390)
T ss_dssp             HHHHHCCSSSCCEEEEECTTT-BTTBCCC--T--TTSC--CSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTT
T ss_pred             HHHhhhhhhcCcEEEEEcccc-cCCcCCC--h--hhcC--CCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCc
Confidence            3688    9999999999985 5544211  1  1223  89885  999552  12 44332 223221 110      


Q ss_pred             ----------------ceeeccCCCHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHhh
Q psy4800          64 ----------------RVFNTWMGDPGKVLLLKGIIDTIHNEN----LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 ----------------~~~~T~~~~p~~~a~a~a~l~~i~~~~----~~~~~~~~g~~l~~~L~~l  109 (119)
                                      ..+.+...|+.+++++.++++.+++++    ..++++++.+++.+.|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  316 (390)
T 1elu_A          251 ITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL  316 (390)
T ss_dssp             EEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence                            011233467888888888999886543    5667788888888888764

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=98.58  E-value=3.7e-08  Score=74.41  Aligned_cols=99  Identities=13%  Similarity=0.089  Sum_probs=62.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhcc-----Ccccccc--ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQL-----GGYFLKP--EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg~-----gG~~~~~--~~~~~-~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|+.. ...     ...+..  +|+++  ++|.+++     +|++...  .+.+. .......++.
T Consensus       175 ~la~~~g~~li~D~~~~~~-~~~-----~~~~~~--~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~  246 (392)
T 3qhx_A          175 QLGADSSAKVLVDNTFASP-ALQ-----QPLSLG--ADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAV  246 (392)
T ss_dssp             HHHHHHTCEEEEECTTTCT-TTC-----CGGGGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHcCCEEEEECCCccc-ccC-----ChHHhC--CcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCC
Confidence            4799999999999998621 111     222333  89886  9999963     3444432  23221 1122334567


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|+.+++++..++.+..  ..++..++.+++.+.|++.
T Consensus       247 ~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~l~~~L~~~  283 (392)
T 3qhx_A          247 PGPFDAYLTMRGLKTLVL--RMQRHSENAAAVAEFLAEH  283 (392)
T ss_dssp             CCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHhcC
Confidence            889999988887776542  3456677777777777653

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.56  E-value=4.6e-08  Score=73.17  Aligned_cols=99  Identities=12%  Similarity=0.103  Sum_probs=61.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-C----ccccc-c-ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-G----GYFLK-P-EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-g----G~~~~-~-~~~~~-~~~~~~~T~~   70 (119)
                      ++|++||+++|+||+|+++... ...   .++    +|++  +++|++++ +    |++.. + .+.+. .+.....+..
T Consensus       161 ~l~~~~~~~li~De~~~~~~~~-~~~---~~~----~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~  232 (386)
T 1cs1_A          161 HLAREVGAVSVVDNTFLSPALQ-NPL---ALG----ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT  232 (386)
T ss_dssp             HHHHHTTCEEEEECTTTCTTTC-CGG---GGT----CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHcCCEEEEECCCcccccC-Ccc---ccC----ceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence            4799999999999999865332 221   233    5665  89999862 2    44443 2 33322 1122223456


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|+++.++.++++.+.  +..+++.++.+.+.+.|+++
T Consensus       233 ~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  269 (386)
T 1cs1_A          233 GGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQTQ  269 (386)
T ss_dssp             CCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            89999888877776553  34455666666777766653

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=98.56  E-value=4e-08  Score=72.10  Aligned_cols=102  Identities=15%  Similarity=-0.009  Sum_probs=62.2

Q ss_pred             hhCCEEEEccccccccCCCcc---hh-hhhc-CCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800           5 YHGSALLIDEVQTGGGPCGKF---WC-HEHF-DLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         5 ~~~~lli~DEv~tG~Gr~G~~---~~-~~~~-g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~   74 (119)
                      +||+++|+||+++++...|..   .. ...+ +..  +.+.+++|.+| .|   |++..+ .+.+..... ...++.|++
T Consensus       171 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-~~~~~~~~~  247 (354)
T 3ly1_A          171 PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENI--ILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRY-VAGEKINFS  247 (354)
T ss_dssp             CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSE--EEEEESSSTTCCGGGCCEEEECCHHHHHHHGGG-TTCSCCCHH
T ss_pred             CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCE--EEEeeChhhccChhhhheeeecCHHHHHHHHHh-cCCCCCCHH
Confidence            499999999999987666541   11 1222 222  44558999996 33   444432 232211111 112578999


Q ss_pred             HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+++.++|+..+. ++..++++++.+++++.|+++
T Consensus       248 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  283 (354)
T 3ly1_A          248 GVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL  283 (354)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999888874421 345566777777888887765

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=98.54  E-value=1.2e-07  Score=70.06  Aligned_cols=102  Identities=12%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhcc---Ccccccc--cccc----cc------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQL---GGYFLKP--EFVP----QQ------   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg~---gG~~~~~--~~~~----~~------   61 (119)
                      ++|++||+++|+||+|+ +|.   .+..+..+..  +|+++++    |++++   ||+++..  .+..    ..      
T Consensus       146 ~~~~~~~~~li~D~~~~-~g~---~~~~~~~~~~--~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~  219 (374)
T 3uwc_A          146 KIAKKHNLHIVEDACQT-ILG---RINDKFVGSW--GQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN  219 (374)
T ss_dssp             HHHHHTTCEEEEECTTC-TTC---EETTEETTSS--SSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE
T ss_pred             HHHHHcCCEEEEeCCCc-cCc---eeCCeecccc--ccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc
Confidence            47999999999999986 221   1222334444  7999888    99963   4555422  2211    00      


Q ss_pred             c---cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          62 A---YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        62 ~---~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      .   .....++..+++.++++...++.++  ++.++.+++.+++++.|+++.
T Consensus       220 ~~~~~~~~~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~  269 (374)
T 3uwc_A          220 RDVCVEYGINCRMDTIQAVIANRLMNQLE--TITEKRRGIAHLYDQSFVDLS  269 (374)
T ss_dssp             TTEESSCCCBCBCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHTGGGT
T ss_pred             cCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC
Confidence            0   0112344568888887776665553  467788888999999888764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=98.53  E-value=3.2e-07  Score=68.36  Aligned_cols=100  Identities=14%  Similarity=0.075  Sum_probs=64.1

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCcccccc-c-ccc-------cc---
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKP-E-FVP-------QQ---   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~-~-~~~-------~~---   61 (119)
                      ++|++||+++|+||+|+ |.-..+     ...+..  +|+.+++    |+++  .||+++.. . +.+       ..   
T Consensus       165 ~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~--~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~  237 (391)
T 3dr4_A          165 EVARRHNLLVIEDAAEAVGATYRG-----KKSGSL--GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDP  237 (391)
T ss_dssp             HHHHHTTCEEEEECTTCTTCEETT-----EETTSS--SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCT
T ss_pred             HHHHHcCCEEEEECcccccceECC-----eeeccc--CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCC
Confidence            47999999999999986 321112     223333  6888888    9995  24454422 1 211       00   


Q ss_pred             -----ccceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 -----AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 -----~~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                           .......+..+++.+++++..++.++  +..++.+++.+++++.|+++
T Consensus       238 ~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~  288 (391)
T 3dr4_A          238 NRRYWFPIVGFNYRMTNIQAAIGLAQLERVD--EHLAARERVVGWYEQKLARL  288 (391)
T ss_dssp             TSTTCCSSCCCBCBCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHGGG
T ss_pred             CCcccccccccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence                 01112345778888888777776654  46678888999999999876

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=98.52  E-value=4.2e-07  Score=70.12  Aligned_cols=103  Identities=17%  Similarity=0.085  Sum_probs=64.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhcc--------Ccccc-ccccccccc-c-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQL--------GGYFL-KPEFVPQQA-Y-----   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg~--------gG~~~-~~~~~~~~~-~-----   63 (119)
                      ++|++||+++|+||++.. +.+|.. ....++    +|++++  +|.++.        .|++. .+.+.+..+ .     
T Consensus       227 ~l~~~~g~~li~Dea~~~-~~~g~~-~~~~~g----~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~  300 (474)
T 1wyu_B          227 RLCKEAGVQLYYDGANLN-AIMGWA-RPGDMG----FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERG  300 (474)
T ss_dssp             HHHHHHTCEEEEEGGGGG-GTTTTC-CHHHHT----CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEEC
T ss_pred             HHHHHcCCEEEEeCchhh-hhccCC-CcccCC----CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeecc
Confidence            479999999999999852 233321 111223    899977  898851        13333 223322111 0     


Q ss_pred             ---c-----------eeeccCCCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHhh
Q psy4800          64 ---R-----------VFNTWMGDPGKVLLLKGIIDTIHNENL---LDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 ---~-----------~~~T~~~~p~~~a~a~a~l~~i~~~~~---~~~~~~~g~~l~~~L~~l  109 (119)
                         +           ...++.+|+++++++.+.++.+..+.+   .+++.++.+++.+.|+++
T Consensus       301 g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~  363 (474)
T 1wyu_B          301 EEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK  363 (474)
T ss_dssp             SSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence               0           113445788888888888876644433   667888999999999875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=98.52  E-value=6e-08  Score=73.04  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc-----Ccccccc-cccc--cccccee-eccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-----GGYFLKP-EFVP--QQAYRVF-NTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~-----gG~~~~~-~~~~--~~~~~~~-~T~~~   71 (119)
                      ++|++||+++|+||+|+.+ ..+...   .++.+  +.+.+++|.+++     ||++..+ .+..  ....... .+...
T Consensus       174 ~l~~~~~~~li~D~~~~~~-~~~~~~---~~~~d--~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T 1gc0_A          174 KIARKHGATVVVDNTYCTP-YLQRPL---ELGAD--LVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL  247 (398)
T ss_dssp             HHHGGGTCEEEEECTTTHH-HHCCGG---GGTCS--EEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCC
T ss_pred             HHHHHcCCEEEEECCCccc-ccCCch---hhCce--EEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCC
Confidence            4799999999999998632 222221   23433  444489999962     4555433 2221  1111222 33467


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +|+.+++++++++.+.  ...++..++.+.+.+.|++
T Consensus       248 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~  282 (398)
T 1gc0_A          248 SPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFLAR  282 (398)
T ss_dssp             CHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHhc
Confidence            8999988888887553  3456667777777777766

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=98.51  E-value=1.4e-07  Score=70.22  Aligned_cols=41  Identities=15%  Similarity=0.089  Sum_probs=33.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +..|+.++++..++++.+.++   +..++++++.+++.+.|+++
T Consensus       266 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  309 (411)
T 3nnk_A          266 HTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM  309 (411)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            356888888888999987654   56778889999999999875

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=98.51  E-value=1.4e-07  Score=70.91  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCE--EEEchhhcc-----Ccccccc-cccc-c-cccceee-cc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDI--VTFSKKMQL-----GGYFLKP-EFVP-Q-QAYRVFN-TW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi--~t~gK~lg~-----gG~~~~~-~~~~-~-~~~~~~~-T~   69 (119)
                      ++|++||+++|+||++.. |..+...   .++    +|+  .+++|.+++     +|++..+ .+.. . .+..... +.
T Consensus       173 ~l~~~~~~~li~De~~~~-~~~~~~~---~~~----~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~  244 (398)
T 2rfv_A          173 GIAHQQGALLVVDNTFMS-PYCQQPL---QLG----ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  244 (398)
T ss_dssp             HHHHHTTCEEEEECTTTC-TTTCCGG---GGT----CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             HHHHHcCCEEEEECCCcc-cccCCch---hhC----CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCC
Confidence            479999999999999862 2333221   233    565  589999852     3555432 2322 1 1112222 45


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|+.++++.++|+.+.  .+.++..++.+.+.+.|++
T Consensus       245 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~  281 (398)
T 2rfv_A          245 CMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEG  281 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHc
Confidence            788999999988887553  3445566677777777765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=98.50  E-value=2.2e-07  Score=67.58  Aligned_cols=102  Identities=15%  Similarity=0.008  Sum_probs=64.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc--cC-ccccc-cccccc-c--c-c-------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ--LG-GYFLK-PEFVPQ-Q--A-Y-------   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg--~g-G~~~~-~~~~~~-~--~-~-------   63 (119)
                      ++|++||+++|+||+| ++|+...  ....++    +|++++  +|.++  .| |++.. +.+.+. .  + .       
T Consensus       148 ~l~~~~~~~li~D~a~-~~~~~~~--~~~~~~----~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~  220 (353)
T 2yrr_A          148 ALAKEAGALFFLDAVT-TLGMLPF--SMRAMG----VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARV  220 (353)
T ss_dssp             HHHHHHTCEEEEECTT-TTTTSCC--CHHHHT----CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHH
T ss_pred             HHHHHcCCeEEEEcCc-ccccccc--cccccC----ceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHH
Confidence            4799999999999998 5665532  122232    688864  69773  12 44432 222211 0  0 0       


Q ss_pred             -----ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          64 -----RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 -----~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                           ....++..|+.+++++.++++.+.++   +..++++++.+++++.|+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  274 (353)
T 2yrr_A          221 AEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR  274 (353)
T ss_dssp             HHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC
Confidence                 11223356788888888899887654   46677888999999999875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=98.50  E-value=1.2e-07  Score=71.22  Aligned_cols=103  Identities=13%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             hhCCEEEEccccccccCCCcc---hhhhhcCCCCCCC---EE--EEchhhc-cC---ccccc----ccccccc----ccc
Q psy4800           5 YHGSALLIDEVQTGGGPCGKF---WCHEHFDLEESPD---IV--TFSKKMQ-LG---GYFLK----PEFVPQQ----AYR   64 (119)
Q Consensus         5 ~~~~lli~DEv~tG~Gr~G~~---~~~~~~g~~~~pD---i~--t~gK~lg-~g---G~~~~----~~~~~~~----~~~   64 (119)
                      +||+++|+||++.+|+..|..   +.....++.  +|   ++  +|+|.+| .|   |++..    ..+.+..    ...
T Consensus       217 ~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~  294 (418)
T 3rq1_A          217 RNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLP--KEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKST  294 (418)
T ss_dssp             SCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCC--TTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccccccCChHHHHHHHHHHHhcC--CCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHH
Confidence            899999999999998776642   223333454  66   33  8999986 34   55543    2333211    111


Q ss_pred             eeec-cCCCHHHHHHHHHHHHHH------hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 VFNT-WMGDPGKVLLLKGIIDTI------HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~~~T-~~~~p~~~a~a~a~l~~i------~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++ ...++++.+++.+.|+..      .+  .+++++++++.+++.+.|+++
T Consensus       295 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (418)
T 3rq1_A          295 SRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV  348 (418)
T ss_dssp             HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1122 346778777777766432      11  134566778888888888776

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=98.49  E-value=1.3e-07  Score=69.29  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             hhhhhCCEEEEccccccccCCCcchh-hhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHH
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWC-HEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~-~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~   75 (119)
                      +++.+| ++|+||+|++++. +.... .+..+..  +++.+++|.+| .|   |++..+ .+.+.... ...+++.|+++
T Consensus       163 l~~~~~-~li~De~~~~~~~-~~~~~~~~~~~~~--i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~-~~~~~~~~~~~  237 (335)
T 1uu1_A          163 ILKTGA-FVALDEAYYEFHG-ESYVDFLKKYENL--AVIRTFSKAFSLAAQRVGYVVASEKFIDAYNR-VRLPFNVSYVS  237 (335)
T ss_dssp             HHHTTC-EEEEECTTHHHHC-CCCGGGGGTCSSE--EEEEESTTTTTCGGGCCEEEEECHHHHHHHHH-HSCTTCSCHHH
T ss_pred             HHHhCC-EEEEECcchhhcc-hhHHHHhhhCCCE--EEEecchhhcCCcccCeEEEEeCHHHHHHHHH-hcCCCCcCHHH
Confidence            566668 9999999987643 22111 1222222  44559999996 34   554432 23221110 11346789999


Q ss_pred             HHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          76 VLLLKGIIDTIH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        76 ~a~a~a~l~~i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+++.++|+..+ -++..++++++.+++.+.|+++
T Consensus       238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  272 (335)
T 1uu1_A          238 QMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999988887632 1346667788888888888775

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=98.48  E-value=4.3e-07  Score=67.71  Aligned_cols=102  Identities=12%  Similarity=0.042  Sum_probs=62.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCc-cccc-cccccc-cccc---------e
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGG-YFLK-PEFVPQ-QAYR---------V   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG-~~~~-~~~~~~-~~~~---------~   65 (119)
                      ++|++||+++|+||+|. +|...  +..+.++    +|++  +++|.+| .+| ++.. +.+.+. .+..         .
T Consensus       189 ~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~----~d~~~~s~~K~~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~  261 (406)
T 3cai_A          189 KLVHDVGALVVVDHSAA-APYRL--LDIRETD----ADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPAR  261 (406)
T ss_dssp             HHHHHTTCEEEEECTTT-TTTCC--CCHHHHC----CSEEEEEGGGGTSCSCEEEEESCHHHHHTSCCCCSCTTCCGGGG
T ss_pred             HHHHHcCCEEEEEcccc-cCCCC--CCchhcC----CCEEEeehhhhcCCCcCeEEEEehHHHhhcCCcccCCCCCcccc
Confidence            47999999999999985 33221  1123333    6877  5679876 334 5543 223221 1111         0


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhh-----------------hcHHHHHHHHHHHHHHHHHhh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHN-----------------ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~-----------------~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.....|+.+++++.++++.+++                 ++..++++++.+++.+.|+++
T Consensus       262 ~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (406)
T 3cai_A          262 LEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL  322 (406)
T ss_dssp             GCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            11334688888888888988765                 245566777888888888764

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=98.48  E-value=8.5e-08  Score=71.50  Aligned_cols=103  Identities=14%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             hhhh------hCCEEEEccccccccCCCcc--hhhhhcCCCCCCCEEEEchhhc-cC---ccccc-ccccc------ccc
Q psy4800           2 YEKY------HGSALLIDEVQTGGGPCGKF--WCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK-PEFVP------QQA   62 (119)
Q Consensus         2 l~~~------~~~lli~DEv~tG~Gr~G~~--~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~-~~~~~------~~~   62 (119)
                      +|++      ||+++|+||+++++...|..  .....++..  +.+.+++|.+| .|   |++.. +.+..      ...
T Consensus       200 ~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~  277 (398)
T 3ele_A          200 LLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNT--LVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVC  277 (398)
T ss_dssp             HHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSE--EEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHH
T ss_pred             HHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCe--EEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHH
Confidence            6777      99999999999988666642  122223322  45558999996 33   44432 22221      000


Q ss_pred             --cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 --YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 --~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                        .....++..++++..++.+.+   ++.+..++++++.+++.+.|+++
T Consensus       278 ~~~~~~~~~~~~~~~~~a~~~~l---~~~~~~~~~~~~~~~l~~~L~~~  323 (398)
T 3ele_A          278 GAGRALGYVCAPSLFQKMIVKCQ---GATGDINAYKENRDLLYEGLTRI  323 (398)
T ss_dssp             HHHHHTTCCCSCHHHHHHHTTCT---TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccccCCCHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHc
Confidence              011234566677666655444   34456678888899999999876

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=98.44  E-value=1.5e-07  Score=71.29  Aligned_cols=100  Identities=18%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhcc-----Ccccccc-cc---------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQL-----GGYFLKP-EF---------------   57 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg~-----gG~~~~~-~~---------------   57 (119)
                      ++|++||+++|+||+|++++.....     ....  +|+++  ++|.+++     ||++..+ .+               
T Consensus       164 ~l~~~~~~~li~D~~~~~~~~~~~~-----~~~~--~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  236 (412)
T 2cb1_A          164 TLAEEAGVALVVDNTFGAAGALCRP-----LAWG--AHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG  236 (412)
T ss_dssp             HHHHHHTCEEEEECGGGTTTTSCCG-----GGGT--CSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred             HHHHHcCCEEEEECCCccccccCCc-----cccC--CeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc
Confidence            4799999999999999755322211     2233  88885  9999952     3333332 21               


Q ss_pred             ------------ccccccc--eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          58 ------------VPQQAYR--VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        58 ------------~~~~~~~--~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                  .+..+..  ....+..+|..++.+...++.+.  +..++.+++.++|.+.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~  300 (412)
T 2cb1_A          237 QIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVA--LRVARMSETARFLAERLQGH  300 (412)
T ss_dssp             ---HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred             cchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHH--HHHHHHHHHHHHHHHHHHcC
Confidence                        0000000  11122568888888887777663  34556678888888888763

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=98.43  E-value=1.1e-07  Score=70.03  Aligned_cols=102  Identities=15%  Similarity=0.057  Sum_probs=59.2

Q ss_pred             hhCCEEEEcccccccc---CCCc-chhh---hhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCC
Q psy4800           5 YHGSALLIDEVQTGGG---PCGK-FWCH---EHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGD   72 (119)
Q Consensus         5 ~~~~lli~DEv~tG~G---r~G~-~~~~---~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~   72 (119)
                      ++|+++|+||+|+++.   ..+. ....   ...+..  ..+.+++|.+| .|   |++..+ .+.+... ....+++.|
T Consensus       183 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~-~~~~~~~~~  259 (365)
T 3get_A          183 NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV--LYLGTFSKLYGLGGLRIGYGIANANIISAFY-KLRAPFNVS  259 (365)
T ss_dssp             CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTE--EEEEESSSTTSCTTTCCEEEEECHHHHHHHH-HHSCTTCSC
T ss_pred             CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCE--EEEeecchHhcCcchheEEEEcCHHHHHHHH-HhcCCCCcC
Confidence            6799999999998654   2221 1111   222322  34448999986 33   444432 2322111 112345689


Q ss_pred             HHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++.+++.++|+..+. ++..++++++.+++.+.|+++
T Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  297 (365)
T 3get_A          260 NLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH  297 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999988888874321 245556677777777777665

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=98.43  E-value=8e-08  Score=73.10  Aligned_cols=100  Identities=12%  Similarity=0.026  Sum_probs=58.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc-----Cc-ccc-cc-ccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-----GG-YFL-KP-EFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~-----gG-~~~-~~-~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++|+||+++.    +..+....+|.+  +.+.+++|.+++     || +++ .+ .+.+. .......+...
T Consensus       176 ~la~~~g~~livDe~~~~----~~~~~~~~~g~d--iv~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~  249 (400)
T 3nmy_A          176 VIARKHGLLTVVDNTFAS----PMLQRPLSLGAD--LVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQ  249 (400)
T ss_dssp             HHHHHTTCEEEEECTTTH----HHHCCGGGGTCS--EEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBC
T ss_pred             HHHHHcCCEEEEECCCcc----cccCChhhcCCc--EEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence            479999999999999852    111111223433  444469999963     34 222 22 22211 11122334567


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      +|+.+..++..++.+.  ...++..++.+.+.+.|++
T Consensus       250 ~~~~a~~~l~~l~~l~--~r~~~~~~~a~~l~~~L~~  284 (400)
T 3nmy_A          250 GPFDSFLALRGLKTLP--LRMRAHCENALALAQWLET  284 (400)
T ss_dssp             CHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHc
Confidence            8999888888777664  3455667777777777754

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=98.43  E-value=6.2e-07  Score=66.89  Aligned_cols=100  Identities=12%  Similarity=-0.027  Sum_probs=65.9

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEchh----hc--cCcccccc--cccc-------cc--c
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFSKK----MQ--LGGYFLKP--EFVP-------QQ--A   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~gK~----lg--~gG~~~~~--~~~~-------~~--~   62 (119)
                      ++|++||+++|+||+|+ |....     .+.+|..  +|+.+|+|.    ++  .||++..+  .+.+       ..  .
T Consensus       149 ~l~~~~~~~li~D~a~~~g~~~~-----~~~~g~~--~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~  221 (390)
T 3b8x_A          149 KIIGGRDIILLEDNCESMGATFN-----NKCAGTF--GLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTR  221 (390)
T ss_dssp             HHHTTSCCEEEEECTTCTTCEET-----TEETTSS--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBST
T ss_pred             HHHHHcCCEEEEECcCcccCEEC-----Ccccccc--cceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCc
Confidence            47999999999999987 43211     2345666  899988763    32  24665532  2211       00  0


Q ss_pred             -------------------cc----eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 -------------------YR----VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 -------------------~~----~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                         .+    .+.++..+++.++++++.++.++  +..++.+++.+++++.|+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~  289 (390)
T 3b8x_A          222 NLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH  289 (390)
T ss_dssp             TSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence                               00    12334578999999998888775  46778888999999988764

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=98.43  E-value=1.3e-07  Score=69.67  Aligned_cols=101  Identities=12%  Similarity=0.017  Sum_probs=60.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEc--hhhc--cCccccc--ccccc----ccc-c----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFS--KKMQ--LGGYFLK--PEFVP----QQA-Y----   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~g--K~lg--~gG~~~~--~~~~~----~~~-~----   63 (119)
                      ++|++||+++|+||+|+ +|...   ..+..+..  +|+.  +++  |.++  .|+++..  ..+.+    ... .    
T Consensus       142 ~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~~--~~i~~~s~s~~K~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  215 (375)
T 2fnu_A          142 KLCKKHSLSFLSDSSHA-LGSEY---QNKKVGGF--ALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKK  215 (375)
T ss_dssp             HHHHHHTCEEEEECTTC-TTCEE---TTEETTSS--SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred             HHHHHcCCEEEEECccc-cCCeE---CCeecccc--CCeEEEeCCCCCCccccCceEEEeCCHHHHHHHHHHHhcCCccc
Confidence            47999999999999986 33321   11222322  4544  778  9996  2344442  22321    110 0    


Q ss_pred             --------ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          64 --------RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 --------~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                              ....++..+++.++++...++.++  +..++.+++.+++.+.|+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~  267 (375)
T 2fnu_A          216 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKDN  267 (375)
T ss_dssp             SSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence                    012234678888887776655443  46677888889999988774

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=98.41  E-value=3.1e-07  Score=68.55  Aligned_cols=107  Identities=17%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---cccccc-ccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++||+++|+||++..+...|......  .+....+++  +|+|.+| .|   |++..+ .+... .+.....+++.+
T Consensus       191 ~~~~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~~~~~~  268 (385)
T 1b5p_A          191 RLAVEHDFYLVSDEIYEHLLYEGEHFSPG--RVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPD  268 (385)
T ss_dssp             HHHHHTTCEEEEECTTTTCBSSSCCCCGG--GTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCC
T ss_pred             HHHHHcCCEEEEEccchhcccCCCCCCHH--HcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhhccCCCC
Confidence            47999999999999987653323211111  121012333  8999986 33   555433 23221 111122355678


Q ss_pred             HHHHHHHHHHHHH---Hhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDT---IHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~---i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++..++.++|+.   ..+  ++..++++++.+++.+.|+++
T Consensus       269 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T 1b5p_A          269 TIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL  310 (385)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8888888888753   222  245566777778888888765

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=98.40  E-value=4.9e-07  Score=68.31  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCcccccc--ccccc----ccc----
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKP--EFVPQ----QAY----   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~--~~~~~----~~~----   63 (119)
                      ++|++||+++|+||+|+ |+...|..     .+..  +|+++++    |+++  .+|+++.+  .+.+.    ...    
T Consensus       159 ~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~--~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~  231 (424)
T 2po3_A          159 KVADEHGLRLYFDAAHALGCAVDGRP-----AGSL--GDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDL  231 (424)
T ss_dssp             HHHHHTTCEEEEECTTCTTCEETTEE-----TTSS--SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTC
T ss_pred             HHHHHcCCEEEEECccccCCeECCee-----cccc--cCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccc
Confidence            47999999999999998 77544432     2222  6887666    9885  24665543  22210    000    


Q ss_pred             -----ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          64 -----RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 -----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                           ..+.++..+++.+++++..++.++  +..++.+++.+++++.|+++
T Consensus       232 ~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~~~  280 (424)
T 2po3_A          232 PGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLADL  280 (424)
T ss_dssp             TTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC
T ss_pred             cccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence                 111233457888888887766654  36677778888888887654

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=98.40  E-value=1.3e-06  Score=64.18  Aligned_cols=102  Identities=16%  Similarity=0.084  Sum_probs=62.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcccc-cccccccc-------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFL-KPEFVPQQ-------------   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~-~~~~~~~~-------------   61 (119)
                      ++|++||+++|+||+|+ +|...  ....  ...  +|+++++  |+++   +.|++. .+.+....             
T Consensus       151 ~l~~~~~~~li~D~a~~-~~~~~--~~~~--~~~--~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  223 (384)
T 3zrp_A          151 NKIRKYVELIVVDGVSS-VGAEE--VKAE--EWN--VDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDL  223 (384)
T ss_dssp             HHHGGGEEEEEEECTTT-TTTSC--CCTT--TTT--CSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCH
T ss_pred             HHHHhcCCEEEEECccc-ccCcc--cccc--ccC--CCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccH
Confidence            47999999999999975 32221  1111  112  7888655  9884   123333 22221100             


Q ss_pred             c------cc----eeecc-CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          62 A------YR----VFNTW-MGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~------~~----~~~T~-~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .      ..    ....+ ..++..+++..++++.+.+.   +..++++++.+++.+.|+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  285 (384)
T 3zrp_A          224 RNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL  285 (384)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence            0      00    11222 45777778788889887654   57778889999999999876

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=98.40  E-value=3.1e-07  Score=69.84  Aligned_cols=106  Identities=15%  Similarity=0.069  Sum_probs=61.6

Q ss_pred             ChhhhhCCEEEEcccccc----------ccCCCcchh--hhhcCCCCCCCEEEEc-hhhc--c-Cccccc--cccccc--
Q psy4800           1 MYEKYHGSALLIDEVQTG----------GGPCGKFWC--HEHFDLEESPDIVTFS-KKMQ--L-GGYFLK--PEFVPQ--   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG----------~Gr~G~~~~--~~~~g~~~~pDi~t~g-K~lg--~-gG~~~~--~~~~~~--   60 (119)
                      ++|++||+++|+||+|+.          +...|....  .+..+..  +|++++| |.++  + ||++..  +.+.+.  
T Consensus       202 ~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~  279 (456)
T 2ez2_A          202 ELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSY--ADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAK  279 (456)
T ss_dssp             HHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTT--CSEEEEETTTTTCCSSCEEEEESCHHHHHHHH
T ss_pred             HHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhccc--CCEEEEeCcccCCCCceeEEEECCHHHHHHHH
Confidence            479999999999999873          345554321  1123333  8998874 5554  2 566654  233221  


Q ss_pred             --cccc-eeeccC-CCHHHHHH-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 --QAYR-VFNTWM-GDPGKVLL-LKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 --~~~~-~~~T~~-~~p~~~a~-a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                        .... .++++. .++..+++ +.+.++.++ +++.++.+++.+++++.|++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          280 ELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC
Confidence              1111 112333 24444444 555555553 456777888889999999874

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=98.39  E-value=2.5e-07  Score=69.41  Aligned_cols=101  Identities=19%  Similarity=0.217  Sum_probs=63.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhcc---Cccccc--cccccc----ccc----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQL---GGYFLK--PEFVPQ----QAY----   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg~---gG~~~~--~~~~~~----~~~----   63 (119)
                      ++|++||+++|+||+|+ +|.....   ...+..  +|+++++    |.++.   +|+++.  +.+.+.    ...    
T Consensus       172 ~l~~~~~~~li~Dea~~-~g~~~~~---~~~~~~--~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~  245 (399)
T 2oga_A          172 ELADRHGLHIVEDAAQA-HGARYRG---RRIGAG--SSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQ  245 (399)
T ss_dssp             HHHHHHTCEECEECTTC-TTCEETT---EETTCT--TCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSS
T ss_pred             HHHHHcCCEEEEECccc-ccCccCC---eecccc--cCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccc
Confidence            47999999999999985 3321111   112322  7998874    99963   345443  233210    000    


Q ss_pred             -----ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          64 -----RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 -----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                           ....++..+++.++++.++++.+++  +.++.+++.+++++.|+++
T Consensus       246 ~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~l~~~L~~~  294 (399)
T 2oga_A          246 KYSHETKGTNSRLDEMQAAVLRIRLAHLDS--WNGRRSALAAEYLSGLAGL  294 (399)
T ss_dssp             TTCCCSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHTTTC
T ss_pred             cccccccccCCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC
Confidence                 0123456789999999999887753  5667778888888888764

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=98.37  E-value=3.1e-07  Score=68.25  Aligned_cols=99  Identities=14%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccc--ccccc----ccc-----
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLK--PEFVP----QQA-----   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~--~~~~~----~~~-----   62 (119)
                      ++|++||+++|+||+|+ |+...|..     .+.   +|+++++    |.++  .+|+++.  +.+.+    ...     
T Consensus       148 ~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~---~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~  219 (393)
T 1mdo_A          148 ALGERYGIPVIEDAAHATGTSYKGRH-----IGA---RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGV  219 (393)
T ss_dssp             HHHHHHTCCBCEECTTCTTCEETTEE-----TTS---SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEEC
T ss_pred             HHHHHcCCeEEEECccccCCeECCee-----cCC---CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcc
Confidence            47999999999999987 44333332     222   7888777    9995  2455543  22221    000     


Q ss_pred             ----------ccee--ec----cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ----------YRVF--NT----WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ----------~~~~--~T----~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                ...+  .+    +..+++.++++.+.++.++  +..++.+++.+++++.|+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  280 (393)
T 1mdo_A          220 DAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADL  280 (393)
T ss_dssp             C-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTS
T ss_pred             cchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence                      0110  11    3468898888888777654  45667778888999998875

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=98.36  E-value=2e-06  Score=63.88  Aligned_cols=99  Identities=14%  Similarity=-0.011  Sum_probs=59.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc--Ccc-c-ccc--------ccccccc----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL--GGY-F-LKP--------EFVPQQA----   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~--gG~-~-~~~--------~~~~~~~----   62 (119)
                      ++|++||+++|+||+|+ +|....    .....   +|+++++  |.+|.  .|+ + ..+        .+.....    
T Consensus       183 ~la~~~~~~li~D~a~~-~~~~~~----~~~~~---~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (400)
T 3vax_A          183 QQLRATPTYLHVDAAQG-YGKVPG----DLTTP---IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQ  254 (400)
T ss_dssp             HHHTTSSCEEEEECTTT-TTTSGG----GGGSC---CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCT
T ss_pred             HHHHhcCCEEEEEhhhh-cCCCCc----Chhhc---CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCCCc
Confidence            47999999999999975 332211    11121   7888655  96541  233 2 322        1111100    


Q ss_pred             cceeeccCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHH
Q psy4800          63 YRVFNTWMGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRL  107 (119)
Q Consensus        63 ~~~~~T~~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~  107 (119)
                      .....+...++.++++..++++.+.+  ++..++.+++.+++.+.|+
T Consensus       255 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  301 (400)
T 3vax_A          255 ERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA  301 (400)
T ss_dssp             GGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC
Confidence            00122335678888888888988765  4667778888888888886

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=98.34  E-value=1.6e-06  Score=64.32  Aligned_cols=102  Identities=16%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhcc---Cccccc-cccccc---c----cc----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQL---GGYFLK-PEFVPQ---Q----AY----   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg~---gG~~~~-~~~~~~---~----~~----   63 (119)
                      ++|++||+++|+||++. +|...  ...+  ...  +|+++++  |.+++   -|++.. +.+...   .    ..    
T Consensus       167 ~l~~~~~~~li~Dea~~-~g~~~--~~~~--~~~--~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  239 (396)
T 2ch1_A          167 QICHQHDCLLIVDAVAS-LCGVP--FYMD--KWE--IDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD  239 (396)
T ss_dssp             HHHHHTTCEEEEECTTT-BTTBC--CCTT--TTT--CCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred             HHHHHcCCEEEEEcccc-ccCCc--cchh--hcC--cCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence            47999999999999976 55331  1111  122  7988765  98741   133332 221110   0    00    


Q ss_pred             -------------ceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          64 -------------RVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 -------------~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                   .....+..+..+..++.++|+.+.++   +..++++++.+++.+.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  301 (396)
T 2ch1_A          240 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM  301 (396)
T ss_dssp             HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC
Confidence                         01122345677788888899887543   46677888889999999876

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=98.33  E-value=6.1e-07  Score=66.70  Aligned_cols=109  Identities=16%  Similarity=0.031  Sum_probs=58.9

Q ss_pred             ChhhhhCCEEEEccccccccCCC--cchhhhhc-CCC-CCCCEEEEchhhc-cC---ccccc----ccccc----ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--KFWCHEHF-DLE-ESPDIVTFSKKMQ-LG---GYFLK----PEFVP----QQAYR   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~~~~~~~~-g~~-~~pDi~t~gK~lg-~g---G~~~~----~~~~~----~~~~~   64 (119)
                      ++|++||+++|+||++.++...+  .......+ +.. ....+.+|+|.+| .|   |++..    ..+..    .....
T Consensus       200 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~  279 (397)
T 3fsl_A          200 EILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKAT  279 (397)
T ss_dssp             HHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHH
Confidence            37999999999999998775432  11121111 111 0123348999996 34   55421    12211    11111


Q ss_pred             e-eeccCCCHHHHHHHHHHHHHH------h--hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 V-FNTWMGDPGKVLLLKGIIDTI------H--NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~-~~T~~~~p~~~a~a~a~l~~i------~--~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      . .++...++++.+++.+.++.-      +  -++.+++++++.+++.+.|+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  333 (397)
T 3fsl_A          280 VRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE  333 (397)
T ss_dssp             HHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1 223234556655555555421      1  1345667788888888888776

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=98.33  E-value=5.2e-07  Score=69.38  Aligned_cols=101  Identities=12%  Similarity=0.034  Sum_probs=58.8

Q ss_pred             Chhhh--hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-----cccce
Q psy4800           1 MYEKY--HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-----QAYRV   65 (119)
Q Consensus         1 ~l~~~--~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-----~~~~~   65 (119)
                      ++|++  ||+++|+||++..+.......   .++    .|++  +++|.+|+     ||++..+ .+.+.     ....+
T Consensus       193 ~la~~~~~~~~livDea~~~~~~~~~~~---~~g----~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~  265 (431)
T 3ht4_A          193 AFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVG----ADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGI  265 (431)
T ss_dssp             HHHHHHCTTCEEEEECTTCTTSSSCCGG---GTT----CSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTT
T ss_pred             HHHHhhCCCCEEEEeCCChhhccCCCcc---ccC----CeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCc
Confidence            47999  999999999987653333322   123    4555  79999742     4555432 22211     11122


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      +.+.+.++..+..++..++.+  +...++..++.+++.+.|+++.
T Consensus       266 g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g  308 (431)
T 3ht4_A          266 GAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLG  308 (431)
T ss_dssp             TTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCc
Confidence            223233233234455555554  3466778889999999998764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=98.32  E-value=3.7e-07  Score=68.48  Aligned_cols=102  Identities=11%  Similarity=0.013  Sum_probs=65.4

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEE--chhhc--cCccccc-c-cccc----cccc------
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ--LGGYFLK-P-EFVP----QQAY------   63 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg--~gG~~~~-~-~~~~----~~~~------   63 (119)
                      ++|++||+++|+||+|+ |+...|....  .++ .  +|+.+|  +|.++  .+|++.. + .+.+    ....      
T Consensus       143 ~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~  217 (394)
T 1o69_A          143 EICKENDIVLIEDAAEALGSFYKNKALG--TFG-E--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCL  217 (394)
T ss_dssp             HHHHHTTCEEEEECTTCTTCEETTEETT--SSS-S--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSS
T ss_pred             HHHHHcCCEEEEECcCcccceeCCcccc--ccc-C--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCc
Confidence            47999999999999998 7644443211  111 2  788888  68875  3455554 2 3221    0000      


Q ss_pred             -----ceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          64 -----RVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        64 -----~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                           ..+.++..+++.++.+++.++.+++  ..++++++.+++++.|+++
T Consensus       218 ~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~  266 (394)
T 1o69_A          218 HYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY  266 (394)
T ss_dssp             SCCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT
T ss_pred             cccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc
Confidence                 0111233678888888777776653  6688889999999999875

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=98.31  E-value=1.1e-06  Score=67.68  Aligned_cols=105  Identities=6%  Similarity=-0.159  Sum_probs=56.2

Q ss_pred             ChhhhhCCEEEEccccccccCC-----Ccc----hhhhhcCCCCCCCEEEE--chhhc---cCcccc-ccc-cccc----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPC-----GKF----WCHEHFDLEESPDIVTF--SKKMQ---LGGYFL-KPE-FVPQ----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~-----G~~----~~~~~~g~~~~pDi~t~--gK~lg---~gG~~~-~~~-~~~~----   60 (119)
                      ++|++||++||+||+|.|+.+.     |..    +.+...|    .|++++  .|.+.   ..|++. .+. +...    
T Consensus       230 ~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g----~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~  305 (497)
T 3mc6_A          230 KIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG----VTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYV  305 (497)
T ss_dssp             THHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT----CCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCC
T ss_pred             HHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC----CcEEEECchhhcCCCCCceeEEecCHHHHhhhhcc
Confidence            5899999999999999865332     111    2222223    577754  48762   123332 222 1110    


Q ss_pred             cccceee-----cc--CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          61 QAYRVFN-----TW--MGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ~~~~~~~-----T~--~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+.+..+     ++  ..+....++..++++.+.++   +..+++.++.+++++.|++.
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  364 (497)
T 3mc6_A          306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN  364 (497)
T ss_dssp             BTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0111111     11  11233344556666666544   45567788888999988873

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=98.31  E-value=2.1e-06  Score=65.95  Aligned_cols=101  Identities=14%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEEc--hhhc---cCccccc-cccccccc----cceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTFS--KKMQ---LGGYFLK-PEFVPQQA----YRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~~-~~~~~~~~----~~~~~T~   69 (119)
                      ++|++||+++|+||+|++..+.+. .......  .  +|+++.+  |.++   ++|++.. +.+.+..+    ...+.+.
T Consensus       169 ~l~~~~~~~livDea~~~~~~f~~~~~~~~~~--g--~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~  244 (446)
T 2x3l_A          169 KSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNY--Q--ADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTS  244 (446)
T ss_dssp             HHHHHTTCCEEEECTTCTTTTSTTSCCCGGGG--T--CSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCS
T ss_pred             HHHHhcCCeEEEcchhhhhhccCCCCCChHHc--C--CCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCC
Confidence            479999999999999875222221 1111222  2  7998766  9763   2244432 33322101    1122343


Q ss_pred             CCCHHHHHHHHHHHHHHhhh--c-HHHHHHHHHHHHHHH
Q psy4800          70 MGDPGKVLLLKGIIDTIHNE--N-LLDRVQKTGDILLNV  105 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~--~-~~~~~~~~g~~l~~~  105 (119)
                      +.++..+++..++++.+++.  + +.++.+++.+++++.
T Consensus       245 s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~  283 (446)
T 2x3l_A          245 SPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK  283 (446)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence            56777777777788888753  2 677788888887776

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=98.30  E-value=3.5e-07  Score=69.19  Aligned_cols=107  Identities=7%  Similarity=-0.097  Sum_probs=58.5

Q ss_pred             Chhh-hhCCEEEEccccc--cccCCCcch-hh----h---hcCCCCCCCEEEEchhhccC---ccccc-cccccc-cccc
Q psy4800           1 MYEK-YHGSALLIDEVQT--GGGPCGKFW-CH----E---HFDLEESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYR   64 (119)
Q Consensus         1 ~l~~-~~~~lli~DEv~t--G~Gr~G~~~-~~----~---~~g~~~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~   64 (119)
                      ++|+ +||+++|+||++.  +|+..|... ..    +   ..+..  +++.+|+|.++.|   |++.. +.+... ....
T Consensus       206 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~  283 (422)
T 3d6k_A          206 EMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRF--WFMSSTSKITHAGSGVSFFASSKENIEWYASHA  283 (422)
T ss_dssp             HCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCE--EEEEESTTTSCTTSSCEEEECCHHHHHHHHHHH
T ss_pred             HHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcE--EEEcChhhhcCcccceEEEEeCHHHHHHHHHHH
Confidence            3688 9999999999996  475544211 11    1   12222  5566999974232   44443 233221 1122


Q ss_pred             eeeccCCCHHHHHHHHHHHHHH---hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 VFNTWMGDPGKVLLLKGIIDTI---HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~~~T~~~~p~~~a~a~a~l~~i---~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...+++.|+++.+++.++|+..   .+  ++..+.++++-+++++.|++.
T Consensus       284 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  333 (422)
T 3d6k_A          284 NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSR  333 (422)
T ss_dssp             HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2345677899888887776531   11  122333444555666666553

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.30  E-value=2.8e-06  Score=61.83  Aligned_cols=102  Identities=15%  Similarity=0.081  Sum_probs=63.7

Q ss_pred             Chhhhh--CCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhcc--C-cccc-ccccccc----------c-
Q psy4800           1 MYEKYH--GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQL--G-GYFL-KPEFVPQ----------Q-   61 (119)
Q Consensus         1 ~l~~~~--~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg~--g-G~~~-~~~~~~~----------~-   61 (119)
                      ++|++|  |+++|+||+|+ +|...  ...+.+  .  +|+++  ++|++++  | |++. .+.+.+.          . 
T Consensus       145 ~l~~~~~~~~~li~D~a~~-~~~~~--~~~~~~--~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~  217 (352)
T 1iug_A          145 RAFKEKNPEGLVGADMVTS-LLVGE--VALEAM--G--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLAR  217 (352)
T ss_dssp             HHHHHHCTTCEEEEECTTT-BTTBC--CCSGGG--T--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHH
T ss_pred             HHHHhhCCCCEEEEECCcc-ccCcc--eecccc--C--eeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHH
Confidence            479999  99999999975 54331  111222  2  78774  5697631  2 4433 2222211          0 


Q ss_pred             ----ccceeeccCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHhh
Q psy4800          62 ----AYRVFNTWMGDPGKVLLLKGIIDTIHNE--NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ----~~~~~~T~~~~p~~~a~a~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~l  109 (119)
                          ......++..|+.+++++.++++.+++.  +..++++++.+++.+.|+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  271 (352)
T 1iug_A          218 ELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG  271 (352)
T ss_dssp             HHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence                0011223456888888888999987654  56677888889999998875

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=98.29  E-value=6.7e-07  Score=68.41  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=60.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCc---chhhhhc-CCCCCCC---EEEEchhhc-cC---ccc---c--------cc---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK---FWCHEHF-DLEESPD---IVTFSKKMQ-LG---GYF---L--------KP---   55 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~---~~~~~~~-g~~~~pD---i~t~gK~lg-~g---G~~---~--------~~---   55 (119)
                      ++|++||+++|+||++.+|+..+.   .+....+ +..  ++   +.+|+|.+| .|   |+.   .        .+   
T Consensus       229 ~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~  306 (448)
T 3meb_A          229 PIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAG--VEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKAL  306 (448)
T ss_dssp             HHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTT--CCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHH
T ss_pred             HHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcC--CcEEEEecccccCCCccccceeeeeeeccccccccCCHHH
Confidence            479999999999999988866542   1222222 222  55   348999986 34   554   3        22   


Q ss_pred             --ccccccccce-eeccCCCHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          56 --EFVPQQAYRV-FNTWMGDPGKVLLLKGIIDTIH--------NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        56 --~~~~~~~~~~-~~T~~~~p~~~a~a~a~l~~i~--------~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                        .+........ .++...++++..++.+.|+.-+        -++..++++++-+++.+.|+++
T Consensus       307 ~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          307 SAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              2322111111 2333455666666666654311        1234556677777777777765

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=98.29  E-value=6.2e-07  Score=67.41  Aligned_cols=99  Identities=19%  Similarity=0.112  Sum_probs=59.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-cccccc-ccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQQ-AYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~~-~~~~~~T~~   70 (119)
                      ++|++||+++|+||+++++ ..+..     .+..  +|++  +++|.+++     +|++.. + .+.+.. ......+..
T Consensus       168 ~~~~~~~~~livD~~~~~~-~~~~~-----~~~~--~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~  239 (389)
T 3acz_A          168 VVCHERGARLVVDATFTSP-CFLKP-----LELG--ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL  239 (389)
T ss_dssp             HHHHHHTCEEEEECTTTCT-TTCCG-----GGTT--CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHcCCEEEEECCCccc-cccCc-----cccC--CeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence            4799999999999998743 22222     2233  8988  79999962     355543 3 333211 111111224


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..+.++++.++.+.  ...++..++.+.+.+.|++.
T Consensus       240 ~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~  276 (389)
T 3acz_A          240 MAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQH  276 (389)
T ss_dssp             CCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcC
Confidence            68888888887776542  23445556666666666653

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=98.29  E-value=5.5e-07  Score=66.96  Aligned_cols=102  Identities=15%  Similarity=0.088  Sum_probs=60.5

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCccccc-cc-c--cccc---c------
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGYFLK-PE-F--VPQQ---A------   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~~~~-~~-~--~~~~---~------   62 (119)
                      ++|++||+++|+||+|+ |....|..  ...++ .  .++.+|+  |+++  .||+++. +. +  ....   .      
T Consensus       147 ~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~--i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  221 (388)
T 1b9h_A          147 KISADTGVPLLQDAAHAHGARWQGKR--VGELD-S--IATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPR  221 (388)
T ss_dssp             HHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-S--CEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCT
T ss_pred             HHHHHcCCEEEEecchhcCCccCCee--ccccc-c--eEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCc
Confidence            47999999999999986 44333332  11122 1  3444555  8774  3455543 22 3  1110   0      


Q ss_pred             ---cc----eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ---YR----VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ---~~----~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                         .+    .++++..+++.+++..+.++.+++  ..++.+++.+++.+.|+++
T Consensus       222 ~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~--~~~~~~~~~~~l~~~L~~~  273 (388)
T 1b9h_A          222 DDRRYFHKIAGSNMRLNEFSASVLRAQLARLDE--QIAVRDERWTLLSRLLGAI  273 (388)
T ss_dssp             TCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTS
T ss_pred             cCccceeecccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC
Confidence               00    123344688888777777766643  5667778888898888865

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=98.29  E-value=5.1e-07  Score=66.32  Aligned_cols=99  Identities=13%  Similarity=0.028  Sum_probs=55.0

Q ss_pred             ChhhhhCCEEEEccccc-----cccCCCcchhhhhcCCCCCCCEE--EEchhh-c-cCcccccc-ccccc----ccccee
Q psy4800           1 MYEKYHGSALLIDEVQT-----GGGPCGKFWCHEHFDLEESPDIV--TFSKKM-Q-LGGYFLKP-EFVPQ----QAYRVF   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-----G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~l-g-~gG~~~~~-~~~~~----~~~~~~   66 (119)
                      ++|++||+++|+||++.     ++|+....+.    . .  .|++  +++|++ + .||++..+ .+...    .....+
T Consensus       163 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~-~--~d~~~~s~sK~~~~~~gg~~~~~~~~~~~~~~~~~~~~~  235 (357)
T 3lws_A          163 RYCRERGIRLHLDGARLFEMLPYYEKTAAEIA----G-L--FDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGG  235 (357)
T ss_dssp             HHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH----T-T--SSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCEEEEECchhhhhhhhcCCChHHHH----h-c--CCEEEEeccccCCCCceEEEEcCHHHHHHHHHHHHHhcC
Confidence            47999999999999974     2233322211    1 1  4555  999998 3 56666543 23221    111112


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++..++.+ +++.++|+...  +..++..++.+++.+.|+++
T Consensus       236 ~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  275 (357)
T 3lws_A          236 DLISLYPYI-VSADYYYELRK--DRMGQYYEQAKQLAEQFNAL  275 (357)
T ss_dssp             CCSCCHHHH-HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTS
T ss_pred             CcccchHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence            232334444 44556666532  22344567778888888765

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=98.29  E-value=2.3e-06  Score=63.34  Aligned_cols=102  Identities=16%  Similarity=0.042  Sum_probs=61.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc--cC-ccccc-ccccc----c---cccce--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ--LG-GYFLK-PEFVP----Q---QAYRV--   65 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg--~g-G~~~~-~~~~~----~---~~~~~--   65 (119)
                      ++|++||+++|+||+|+ +|...  .....  ..  +|++++  +|+++  .| |++.. +.+.+    .   ...+.  
T Consensus       168 ~~~~~~~~~li~D~a~~-~~~~~--~~~~~--~~--~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~  240 (393)
T 2huf_A          168 ALCHQHNCLLIVDTVAS-LGGAP--MFMDR--WE--IDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWD  240 (393)
T ss_dssp             HHHHHTTCEEEEECTTT-BTTBC--CCTTT--TT--CSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred             HHHHHcCCEEEEEcccc-cCCCC--cchhh--cC--ccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEc
Confidence            47999999999999974 54331  11111  22  788854  59873  22 44432 22211    1   01111  


Q ss_pred             --------------eecc-CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 --------------FNTW-MGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 --------------~~T~-~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                    ..++ ..++.+.+++.++++.+.++   +..++++++.+++++.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  302 (393)
T 2huf_A          241 MSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA  302 (393)
T ss_dssp             HHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence                          1122 34666777777788887543   46677888999999999875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=98.29  E-value=8.5e-07  Score=65.05  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=59.8

Q ss_pred             hhhhhC-CEEEEccccccccCCCcchhhhhcCCC-CCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHH
Q psy4800           2 YEKYHG-SALLIDEVQTGGGPCGKFWCHEHFDLE-ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         2 l~~~~~-~lli~DEv~tG~Gr~G~~~~~~~~g~~-~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~   74 (119)
                      +++.++ .++|+||++..++..+.... ...+.. ....+.+|+|.++ .|   |++..+ .+.+... ....+++.+++
T Consensus       154 l~~~~~~~~li~Dea~~~~~~~~~~~~-~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~-~~~~~~~~~~~  231 (350)
T 3fkd_A          154 LLNDHPDTTFVLDQSYVSFTTEEVIRP-ADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVA-AFSTPWAVNAL  231 (350)
T ss_dssp             HHHHCTTSEEEEECTTTTSCSSCCCCG-GGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHH-TTCCTTCSCHH
T ss_pred             HHHhCCCCEEEEECchhhhccCcchhh-HHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHH-HhCCCCCCCHH
Confidence            455554 59999999988766664321 112211 0133448999996 33   554432 2322111 11235678999


Q ss_pred             HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.+++.++|+...+ .+..++..++.+++.+.|+++
T Consensus       232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  267 (350)
T 3fkd_A          232 AIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRL  267 (350)
T ss_dssp             HHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999888876541 122233336667777777654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=98.27  E-value=2.4e-06  Score=63.26  Aligned_cols=102  Identities=17%  Similarity=0.081  Sum_probs=63.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cC-ccccc-cccccc----c--c------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LG-GYFLK-PEFVPQ----Q--A------   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~g-G~~~~-~~~~~~----~--~------   62 (119)
                      ++|++||+++|+||+|+ +|...  ...+.+  .  +|+++  ++|+++  .| |++.. +.+.+.    .  +      
T Consensus       158 ~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~--~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~  230 (392)
T 2z9v_A          158 ALVSAHGAYLIVDAVSS-FGGMK--THPEDC--K--ADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLS  230 (392)
T ss_dssp             HHHHHTTCEEEEECTTT-BTTBS--CCGGGG--T--CSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTC
T ss_pred             HHHHHcCCeEEEEcccc-cCCcc--cccccc--c--ceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceecc
Confidence            47999999999999975 44321  112222  2  78875  469774  12 44432 222110    0  0      


Q ss_pred             ---------cceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ---------YRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ---------~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                               .....+...++.+++++.++++.+.+.   +..++++++.+++++.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  289 (392)
T 2z9v_A          231 IVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM  289 (392)
T ss_dssp             SGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence                     011123346777888888889887653   46677889999999999875

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=98.26  E-value=2.7e-06  Score=65.85  Aligned_cols=107  Identities=7%  Similarity=-0.048  Sum_probs=57.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhcc---Ccc-ccccc-cccc---cccceee--c
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQL---GGY-FLKPE-FVPQ---QAYRVFN--T   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg~---gG~-~~~~~-~~~~---~~~~~~~--T   68 (119)
                      ++|++||+++++||++.|+..... +.+...+++ .+|++++  .|++++   .|+ +..+. ....   ...+..+  +
T Consensus       282 ~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~-~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~  359 (497)
T 2qma_A          282 DMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVE-RAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHD  359 (497)
T ss_dssp             HHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGG-GCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC----------
T ss_pred             HHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcc-cCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccc
Confidence            489999999999999987655444 333344551 3899977  998841   122 22322 1111   1111111  1


Q ss_pred             cCCCHHHHH----------HHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVL----------LLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a----------~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...++...+          ...++++.+..+   +..+++.++.++|.+.|+++
T Consensus       360 ~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~  413 (497)
T 2qma_A          360 ELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN  413 (497)
T ss_dssp             ----------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            112333221          223456665433   45667788889999988864

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=98.26  E-value=5.9e-07  Score=65.93  Aligned_cols=102  Identities=16%  Similarity=-0.020  Sum_probs=55.1

Q ss_pred             ChhhhhCCEEEEcccccccc--CCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccccc----ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG--PCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVPQQ----AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G--r~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~~~----~~~~~~T~   69 (119)
                      ++|++||+++|+||++..+.  ..|...  ..+...  .|++  +++|+++  .||++..+ .+.+..    .....+++
T Consensus       165 ~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~--~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~~~~~~~~~~  240 (359)
T 3pj0_A          165 EYCHEQGISLHLDGARLWEITPFYQKSA--EEICAL--FDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLI  240 (359)
T ss_dssp             HHHHHHTCEEEEEETTCGGGHHHHTCCH--HHHHTT--CSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHcCCEEEEECcchhcchhhhCCCH--HHhhcc--CCEEEEeccccCCCcceEEEECCHHHHHHHHHHHHHhCCCcc
Confidence            47999999999999974211  111111  111112  5776  8999885  34554432 233211    11122333


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++.+ +++.++++...  +..++..++.+++.+.|+++
T Consensus       241 ~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  277 (359)
T 3pj0_A          241 SLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFNSC  277 (359)
T ss_dssp             CCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS
T ss_pred             hhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC
Confidence            344444 33445555432  34455677888888888875

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=98.25  E-value=1e-06  Score=66.43  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=59.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCc--chhhhh-cCCCCCCC-E--EEEchhhc-cC---cccc---c-cccc----cccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK--FWCHEH-FDLEESPD-I--VTFSKKMQ-LG---GYFL---K-PEFV----PQQA   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~-~g~~~~pD-i--~t~gK~lg-~g---G~~~---~-~~~~----~~~~   62 (119)
                      ++|++||+++|+||++.+++..+.  ...... .+..  ++ +  .+|+|.+| .|   |++.   . ..+.    ....
T Consensus       222 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~  299 (420)
T 4f4e_A          222 EVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAAN--LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLK  299 (420)
T ss_dssp             HHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTT--CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcC--CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHH
Confidence            479999999999999988865431  222111 1222  23 2  38999996 34   5532   1 1221    1111


Q ss_pred             cce-eeccCCCHHHHHHHHHHHHHH------hh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 YRV-FNTWMGDPGKVLLLKGIIDTI------HN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ~~~-~~T~~~~p~~~a~a~a~l~~i------~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ... .++...++++..++.+.++.-      ++  ++.+++++++.+++.+.|+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          300 RVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111 223334566666655555431      11  345667778888888888775

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=98.25  E-value=1.6e-06  Score=63.15  Aligned_cols=97  Identities=10%  Similarity=0.015  Sum_probs=54.9

Q ss_pred             Chhhh-hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-c-ccccc-ccccee-ec
Q psy4800           1 MYEKY-HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-P-EFVPQ-QAYRVF-NT   68 (119)
Q Consensus         1 ~l~~~-~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~-~~~~~-~~~~~~-~T   68 (119)
                      ++|++ ||+++|+||+|+. |......   .++    +|++  +++|.+++     +|++.. + .+.+. .+.... .+
T Consensus       107 ~~~~~~~~~~li~D~a~~~-~~~~~~~---~~~----~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~  178 (331)
T 1pff_A          107 KQARKQKDILVIVDNTFAS-PILTNPL---DLG----VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITG  178 (331)
T ss_dssp             HHHTTSSSCEEEEECTTTH-HHHCCGG---GGT----CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred             HHHhhhcCCEEEEECCCcc-cccCChh---hcC----CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcC
Confidence            47999 9999999999862 2221111   233    5655  79999862     345543 2 33322 122223 34


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL  107 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~  107 (119)
                      ...+|+++.++.++++.+..  ..++..++.+.+.+.|+
T Consensus       179 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~  215 (331)
T 1pff_A          179 AIISPHDAWLITRGTLTLDM--RVKRAAENAQKVAEFLH  215 (331)
T ss_dssp             CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHH
Confidence            57889888887777776532  22333444444444443

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.24  E-value=1.3e-06  Score=66.50  Aligned_cols=106  Identities=16%  Similarity=0.040  Sum_probs=59.1

Q ss_pred             ChhhhhCCEEEEcccccc---c-------cCCCcchhhhhcC--CCCCCCEE--EEchhhc--cCcccccc---ccccc-
Q psy4800           1 MYEKYHGSALLIDEVQTG---G-------GPCGKFWCHEHFD--LEESPDIV--TFSKKMQ--LGGYFLKP---EFVPQ-   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG---~-------Gr~G~~~~~~~~g--~~~~pDi~--t~gK~lg--~gG~~~~~---~~~~~-   60 (119)
                      ++|++||++||+||+|..   +       +..|.... + .+  ....+|++  +++|++|  .||++..+   .+.+. 
T Consensus       211 ~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~d~~~l~~~~  288 (467)
T 1ax4_A          211 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK-E-VIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLA  288 (467)
T ss_dssp             HHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH-H-HHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHH
T ss_pred             HHHHHcCCEEEEEchhhhhcchhccccccccCCCchh-h-hhhhhccccceEEEeccccCCCCcceEEEeCCHHHHHHHH
Confidence            489999999999999752   1       22221100 0 00  00126765  6788876  26666533   44321 


Q ss_pred             ---ccc-ceeeccCCCHHHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          61 ---QAY-RVFNTWMGDPGKVLLLKG-IIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        61 ---~~~-~~~~T~~~~p~~~a~a~a-~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                         ... ....++++++..+.++.+ +++.+.+++..++..++.+++++.|++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          289 RQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             HHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence               111 122355666655444333 566554444566666788899999987

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=98.24  E-value=4.6e-07  Score=69.14  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc-----Ccccccc-cccc-ccc---cceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-----GGYFLKP-EFVP-QQA---YRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~-----gG~~~~~-~~~~-~~~---~~~~~T~~   70 (119)
                      ++|++||+++|+||+++    +|..+....+|.+  +.+.+++|.+++     +|+++.+ .... ...   ..++.  .
T Consensus       190 ~la~~~g~~livDe~~~----~~~~~~~~~~g~d--iv~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~--~  261 (414)
T 3ndn_A          190 ELAHAAGAKVVLDNVFA----TPLLQQGFPLGVD--VVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGP--A  261 (414)
T ss_dssp             HHHHHTTCEEEEECTTT----HHHHCCCGGGTCS--EEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCC--C
T ss_pred             HHHHHcCCEEEEECCCc----ccccCCchhcCCC--eEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCC--C
Confidence            47999999999999985    2222122234543  444578899963     2444432 2211 111   11122  3


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..++.++..++.+.  ...++..++.+++.+.|++.
T Consensus       262 ~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~  298 (414)
T 3ndn_A          262 MSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEFLNGH  298 (414)
T ss_dssp             CCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            47888777776666553  24455667777777777654

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=98.23  E-value=3.4e-06  Score=62.80  Aligned_cols=40  Identities=10%  Similarity=0.075  Sum_probs=32.3

Q ss_pred             CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..|+.++++..++++.+.+.   +..++++++.+++.+.|+++
T Consensus       267 ~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  309 (416)
T 3isl_A          267 TEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM  309 (416)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            55788888888899887654   67778889999999999875

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=98.22  E-value=1.2e-06  Score=68.56  Aligned_cols=104  Identities=15%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccccc-c---------------cc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE-F---------------VP   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~-~---------------~~   59 (119)
                      ++|++||++|++|++|. |+--.|..  ...+.   ..|++  +++|+|+  .||++..+. +               ..
T Consensus       225 ~ia~~~g~~livD~Ah~~glv~~g~~--~~~~~---~aDiv~~S~hK~l~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~  299 (490)
T 2a7v_A          225 EVCDEVKAHLLADMAHISGLVAAKVI--PSPFK---HADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFED  299 (490)
T ss_dssp             HHHHHTTCEEEEECGGGHHHHHTTSS--CCGGG---TCSEEEEESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHH
T ss_pred             HHHHHcCCEEEEccccccccccCCcC--CCCCC---CCCEEEECCcccCccccchheeeccchhcccccccchhhHHHHH
Confidence            48999999999999975 43112211  01111   26877  7899994  467776432 1               11


Q ss_pred             cccccee-eccC-CCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          60 QQAYRVF-NTWM-GDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ~~~~~~~-~T~~-~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ......+ .+.+ .++..+++..++++.+.+   +++.+++.++.++|++.|++.
T Consensus       300 ~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~  354 (490)
T 2a7v_A          300 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             HHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            1111111 1223 344455555556766643   346678899999999999875

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=98.21  E-value=2.3e-06  Score=64.36  Aligned_cols=82  Identities=9%  Similarity=-0.075  Sum_probs=46.7

Q ss_pred             Chh-hhhCCEEEEcccccc--ccC-----CCcchhhh----hcCCCCCCCEEEEchhhccCc----cccc-cccccc-cc
Q psy4800           1 MYE-KYHGSALLIDEVQTG--GGP-----CGKFWCHE----HFDLEESPDIVTFSKKMQLGG----YFLK-PEFVPQ-QA   62 (119)
Q Consensus         1 ~l~-~~~~~lli~DEv~tG--~Gr-----~G~~~~~~----~~g~~~~pDi~t~gK~lg~gG----~~~~-~~~~~~-~~   62 (119)
                      ++| ++||+++|+||++..  |..     ........    ..+..  ..+.+|+|.+ .+|    ++.. ..+.+. ..
T Consensus       200 ~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~S~sK~~-~~G~r~G~~~~~~~~~~~~~~  276 (423)
T 3ez1_A          200 GLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRA--FVFASTSKIT-FAGAGLGFVASSEDNIRWLSK  276 (423)
T ss_dssp             TCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSE--EEEEESTTTS-CSSSSCEEEEECHHHHHHHHH
T ss_pred             HHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeE--EEEeCchhhc-cCCcceEEEEeCHHHHHHHHH
Confidence            468 999999999999873  322     11122211    11211  3466999975 333    3332 223221 12


Q ss_pred             cceeeccCCCHHHHHHHHHHHHH
Q psy4800          63 YRVFNTWMGDPGKVLLLKGIIDT   85 (119)
Q Consensus        63 ~~~~~T~~~~p~~~a~a~a~l~~   85 (119)
                      .....++..++++..++.+.|+.
T Consensus       277 ~~~~~~~~~~~~~~~a~~~~l~~  299 (423)
T 3ez1_A          277 YLGAQSIGPNKVEQARHVKFLTE  299 (423)
T ss_dssp             HHHHSCSCCCHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCHHHHHHHHHHHHh
Confidence            22345667889988888887775

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=98.20  E-value=1.3e-06  Score=71.34  Aligned_cols=106  Identities=8%  Similarity=-0.039  Sum_probs=67.4

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCC--CCCCEE-----EEchhhcc---Cccccc-cccc----ccccccee
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE--ESPDIV-----TFSKKMQL---GGYFLK-PEFV----PQQAYRVF   66 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~--~~pDi~-----t~gK~lg~---gG~~~~-~~~~----~~~~~~~~   66 (119)
                      +|++++  +|+||+|.+.-..+..+. ....+.  ..+|++     +++|+|++   ||++.. +.+.    +.....+.
T Consensus       321 la~~~~--livDEAH~~~~~f~~~~~-~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~  397 (715)
T 3n75_A          321 TLDVKS--IHFDSAWVPYTNFSPIYE-GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHT  397 (715)
T ss_dssp             HCCCSE--EEEECTTCTTGGGSGGGT-TSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTS
T ss_pred             HhCcCc--EEEccccccccccCCccc-cccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhc
Confidence            566664  799999863212232211 011111  126743     78999962   455543 2221    22234455


Q ss_pred             eccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLGQ  111 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~~  111 (119)
                      +| +.+++.+++..++++++++   +++.+++.++.++|++.|+++..
T Consensus       398 ST-Spsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~  444 (715)
T 3n75_A          398 TT-SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT  444 (715)
T ss_dssp             CS-SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            66 8899999999999999873   46889999999999999998753

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.17  E-value=1.4e-06  Score=63.54  Aligned_cols=101  Identities=14%  Similarity=0.023  Sum_probs=52.7

Q ss_pred             ChhhhhCCEEEEccccccc--cCCCcchhhhhcCCCCCCCEEE--Echhhc-cC-cccc-ccccccccccc---eeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGG--GPCGKFWCHEHFDLEESPDIVT--FSKKMQ-LG-GYFL-KPEFVPQQAYR---VFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~--Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg-~g-G~~~-~~~~~~~~~~~---~~~T~~   70 (119)
                      ++|++||+++|+||+|.+|  |+++...  ...++...+|+++  ..|..+ .| |++. .+.+.+.....   ..+++.
T Consensus       171 ~~~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  248 (359)
T 1svv_A          171 ASCKEHGLYLFLDGARLASALSSPVNDL--TLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMA  248 (359)
T ss_dssp             HHHHHHTCEEEEECTTHHHHHTSTTCCC--CHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTCCCT
T ss_pred             HHHHHhCCEEEEEccchhhhhcCCCcch--hhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHHHHhcCCcccc
Confidence            4799999999999999665  6555321  1111101278875  467532 11 2322 33333221111   223333


Q ss_pred             CCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHH
Q psy4800          71 GDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVR  106 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L  106 (119)
                      .++...++..+   .+++   ++..++++++.+++++.|
T Consensus       249 ~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L  284 (359)
T 1svv_A          249 KGWLLGIQFEV---LMKDNLFFELGAHSNKMAAILKAGL  284 (359)
T ss_dssp             TTHHHHHHHHH---HTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            23333332222   3433   246677888888888888

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=98.16  E-value=3.2e-06  Score=69.09  Aligned_cols=106  Identities=12%  Similarity=-0.048  Sum_probs=63.3

Q ss_pred             ChhhhhCCEEEEcccccc---ccCCCcc---hhhhhcCCCCCCC-EE--EEchhhc--c-Ccccc-ccc-------ccc-
Q psy4800           1 MYEKYHGSALLIDEVQTG---GGPCGKF---WCHEHFDLEESPD-IV--TFSKKMQ--L-GGYFL-KPE-------FVP-   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG---~Gr~G~~---~~~~~~g~~~~pD-i~--t~gK~lg--~-gG~~~-~~~-------~~~-   59 (119)
                      ++|++||+++++||+|.+   |+..+.+   ...+..+.+ .|. ++  +++|+++  . ||++. .+.       +.+ 
T Consensus       304 ~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D-~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~  382 (730)
T 1c4k_A          304 KRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPE-DPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDH  382 (730)
T ss_dssp             HHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTT-SCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCH
T ss_pred             HHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCC-CCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCH
Confidence            479999999999999853   2211110   001112321 121 55  7899986  2 34441 111       111 


Q ss_pred             ----ccccceeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHh
Q psy4800          60 ----QQAYRVFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        60 ----~~~~~~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~  108 (119)
                          .....+.+| +.++..+++..++++.+.+   +++.+++.++.+++++.|++
T Consensus       383 ~~~~~~~~~~~st-sp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~  437 (730)
T 1c4k_A          383 KHFNNSFNLFMST-SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIK  437 (730)
T ss_dssp             HHHHHHHHHHSCS-SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence                011122334 6778888888888888765   35778889999999999987

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=98.15  E-value=1e-06  Score=66.74  Aligned_cols=106  Identities=10%  Similarity=0.001  Sum_probs=58.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhh---hhcCCCCCCCEEEEchhhccC---ccccc-cccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCH---EHFDLEESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~---~~~g~~~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++||+++|+||+|..+ ..+..+..   ...+..  +++.+|+|.+..|   |++.. ..+.+. .......++..+
T Consensus       233 ~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~--i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~  309 (444)
T 3if2_A          233 EIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNT--ILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPT  309 (444)
T ss_dssp             HHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTE--EEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHCCCEEEEECCCCCc-ccccccccccccCCCCE--EEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCC
Confidence            3799999999999998532 11111100   011222  4466999975222   44433 223321 122234566778


Q ss_pred             HHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN-----ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~-----~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++++++.+.++..+-     ....++++++-+.+++.|++.
T Consensus       310 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  351 (444)
T 3if2_A          310 RFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQA  351 (444)
T ss_dssp             CHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888777764321     123445556666666666654

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=98.14  E-value=1e-05  Score=59.44  Aligned_cols=101  Identities=11%  Similarity=0.067  Sum_probs=60.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc--Ccccc-ccc--ccccccc----ceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL--GGYFL-KPE--FVPQQAY----RVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~--gG~~~-~~~--~~~~~~~----~~~~T~   69 (119)
                      ++|++||++ |+||+|. +|....  ....+  .  +|++  +++|.+|.  .|++. .+.  +......    ......
T Consensus       162 ~l~~~~~~~-i~D~a~~-~g~~~~--~~~~~--~--~di~~~s~sK~~g~~g~G~~~~~~~~~l~~~~~~~~~~~~~~~~  233 (382)
T 4eb5_A          162 EVLAGKAAL-HIDATAS-VGQIEV--DVEKI--G--ADMLTISSNDIYGPKGVGALWIRKEAKLQPVILGGGQENGLRSG  233 (382)
T ss_dssp             HHHTTSSEE-EEECTTT-BTTBCC--CHHHH--T--CSEEEEETGGGTCCSSCEEEEEETTCCCCCSSCSSCTGGGTSCS
T ss_pred             HHHHHCCCE-EEEcchh-cCCccc--Ccccc--C--CCEEEeehHHhcCCCceEEEEEccccccCceecCCCccccccCC
Confidence            479999999 9999976 543321  11222  2  7887  45698752  24433 222  2211100    112233


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++..+++..++++.+++  ++..++++++.+++.+.|+++
T Consensus       234 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  275 (382)
T 4eb5_A          234 SENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI  275 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            4567777777888888765  345667788888888888764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=98.13  E-value=4.9e-06  Score=62.93  Aligned_cols=99  Identities=10%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             Chhhh-hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccc-c-cccceee-c
Q psy4800           1 MYEKY-HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVP-Q-QAYRVFN-T   68 (119)
Q Consensus         1 ~l~~~-~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~-~-~~~~~~~-T   68 (119)
                      ++|++ ||+++|+||+|..+.. ....  + ++    .|++  +++|.+++     +|++..+ .+.. . .+..... +
T Consensus       171 ~la~~~~~~~li~De~~~~~~~-~~~~--~-~~----~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g  242 (404)
T 1e5e_A          171 KDAHSQEGVLVIADNTFCSPMI-TNPV--D-FG----VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG  242 (404)
T ss_dssp             HHHHTSTTCEEEEECTTTCTTT-CCGG--G-GT----CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred             HHHHhhcCCEEEEECCCchhhh-CCcc--c-cC----CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCC
Confidence            47999 9999999999975422 2221  1 33    5666  79999862     3555432 2222 1 1111222 3


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ...+|+.+.++.++++.+.  ...++..++.+.+.+.|++.
T Consensus       243 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  281 (404)
T 1e5e_A          243 SVISPHDAWLITRGLSTLN--IRMKAESENAMKVAEYLKSH  281 (404)
T ss_dssp             CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHhC
Confidence            3678998888888776542  23444555666666666543

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=98.13  E-value=1.6e-06  Score=65.50  Aligned_cols=105  Identities=10%  Similarity=-0.100  Sum_probs=56.1

Q ss_pred             hh-hhhCCEEEEcccccc--ccCCCc----chhhh----hcCCCCCCCEEEEchhhccC---cccccc-ccccc-cccce
Q psy4800           2 YE-KYHGSALLIDEVQTG--GGPCGK----FWCHE----HFDLEESPDIVTFSKKMQLG---GYFLKP-EFVPQ-QAYRV   65 (119)
Q Consensus         2 l~-~~~~~lli~DEv~tG--~Gr~G~----~~~~~----~~g~~~~pDi~t~gK~lg~g---G~~~~~-~~~~~-~~~~~   65 (119)
                      +| ++||+++|+||++..  |+..+.    .....    ..+..  +++.+|+|.++.|   |++..+ .+.+. .....
T Consensus       209 ~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~  286 (427)
T 3ppl_A          209 METAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRF--WAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAG  286 (427)
T ss_dssp             CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSE--EEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHH
T ss_pred             HHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcE--EEEechhhccCcCccEEEEEcCHHHHHHHHHHhh
Confidence            67 999999999999987  444332    11111    12222  5566999985222   444432 23221 11223


Q ss_pred             eeccCCCHHHHHHHHHHHHHH---hh--hcHHHHHHHHHHHHHHHHHh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTI---HN--ENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i---~~--~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..++..++++..++.+.++..   .+  .+..+.++++-+.+.+.|++
T Consensus       287 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  334 (427)
T 3ppl_A          287 IRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDS  334 (427)
T ss_dssp             HHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888887777666531   11  12233344444455555544

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=98.12  E-value=1.7e-06  Score=64.63  Aligned_cols=106  Identities=9%  Similarity=-0.045  Sum_probs=57.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhh---hhcCCCCCCCEEEEchhhccC---ccccc-cccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCH---EHFDLEESPDIVTFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~---~~~g~~~~pDi~t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++||+++|+||++..+ ..+..+..   ...+..  ..+.+|+|.+..|   |++.. ..+.+. .......+++.+
T Consensus       207 ~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~--i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~  283 (417)
T 3g7q_A          207 RLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNI--ILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPG  283 (417)
T ss_dssp             HHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTE--EEEEESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHcCCEEEEeCCCccc-cccccccccccCCCCCE--EEEEechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCC
Confidence            4799999999999998532 11111000   001111  2356999954222   44333 223321 122334566778


Q ss_pred             HHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN-----ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~-----~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +++++++.+.++...-     +...++++++.+++.+.|++.
T Consensus       284 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (417)
T 3g7q_A          284 GMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY  325 (417)
T ss_dssp             SHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888777763221     124445566666777777664

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=98.12  E-value=1e-05  Score=62.90  Aligned_cols=46  Identities=20%  Similarity=0.131  Sum_probs=32.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg   47 (119)
                      ++|++||+++++|+++.|+......+.+...++. .+|++++  .|.++
T Consensus       283 ~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~-~aD~v~~s~hK~l~  330 (515)
T 2jis_A          283 DVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQ-RADSVAWNPHKLLA  330 (515)
T ss_dssp             HHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG-GCSEEEECTTSTTC
T ss_pred             HHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCc-cCCEEEECcccccC
Confidence            4799999999999999876444433333333541 3899987  89984

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=98.11  E-value=1.2e-05  Score=61.49  Aligned_cols=102  Identities=12%  Similarity=-0.008  Sum_probs=63.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhh--c-cC-cc-ccccccccc----cccc-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKM--Q-LG-GY-FLKPEFVPQ----QAYR-----   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~l--g-~g-G~-~~~~~~~~~----~~~~-----   64 (119)
                      ++|++||+++|+|++|+ .|....  ..+..+    +|+++  +.|.+  | .| |+ +..+.+...    ....     
T Consensus       238 ~la~~~g~~vi~D~a~~-~g~~~~--~~~~~~----~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~  310 (465)
T 3e9k_A          238 KAGQAKGCYVGFDLAHA-VGNVEL--YLHDWG----VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHEL  310 (465)
T ss_dssp             HHHHHTTCEEEEECTTT-TTTSCC--CHHHHT----CCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCH
T ss_pred             HHHHHcCCEEEEEhhhh-cCCcCC--chhhcC----CCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCC
Confidence            47999999999999975 333221  122233    67774  55998  3 11 22 223332211    0000     


Q ss_pred             ----------e-------eeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 ----------V-------FNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ----------~-------~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                .       +..-..|++++++..++++.+++   ++++++.+++.+++.+.|+++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  375 (465)
T 3e9k_A          311 STRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHN  375 (465)
T ss_dssp             HHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence                      0       00115678899999999999875   457778889999999999875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=98.10  E-value=9.9e-06  Score=63.55  Aligned_cols=51  Identities=18%  Similarity=-0.031  Sum_probs=33.1

Q ss_pred             hhh-hhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---ccccc
Q psy4800           2 YEK-YHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK   54 (119)
Q Consensus         2 l~~-~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~   54 (119)
                      +|+ +||+++|+||++.+|...+........+..  +.+.+|+|.+| .|   |++..
T Consensus       272 la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--i~~~S~SK~~g~~G~RiG~l~~  327 (533)
T 3f6t_A          272 AVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNT--MLVYSYSKLFGCTGWRLGVIAL  327 (533)
T ss_dssp             HHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGE--EEEEESHHHHTCGGGCEEEEEE
T ss_pred             HHHhCCCCEEEEcCCccccccCccCHhhcCCCCE--EEEecCcccCCCcccceEEEEE
Confidence            677 699999999999877543332222212222  55669999997 45   66543

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=98.09  E-value=2.1e-06  Score=62.36  Aligned_cols=104  Identities=18%  Similarity=0.116  Sum_probs=57.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|+++++ +|+||++.+|+..+... ....+..  ..+.+++|.+| .|   |++..+ .+...... ...++..++++
T Consensus       159 ~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~--i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~-~~~~~~~~~~~  233 (337)
T 3p1t_A          159 QLRQRAGK-LLIDETYVDYSSFRARG-LAYGENE--LVFRSFSKSYGLAGLRLGALFGPSELIAAMKR-KQWFCNVGTLD  233 (337)
T ss_dssp             HHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTE--EEEEESSSTTCCTTTCCEEEECCHHHHHHHHT-TSCTTCSCHHH
T ss_pred             HHHHhCCc-EEEECCChhhccccccc-cccCCCE--EEEeeCchhccCcchheEEEEeCHHHHHHHHh-hcCCCCCCHHH
Confidence            37888986 56699998775444321 0111111  22338999996 34   555432 23221111 12345678888


Q ss_pred             HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          76 VLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        76 ~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+++.++|+.... ++..+++.++.+++.+.|+++
T Consensus       234 ~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  268 (337)
T 3p1t_A          234 LHALEAALDNDRAREAHIAKTLAQRRRVADALRGL  268 (337)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8777777764321 234455666667777777765

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=98.08  E-value=9.8e-06  Score=59.27  Aligned_cols=101  Identities=12%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc--Ccccc-cccc--cccc----ccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL--GGYFL-KPEF--VPQQ----AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~--gG~~~-~~~~--~~~~----~~~~~~T~   69 (119)
                      ++|++||+ +|+||+|+ +|...  ...+..+    +|++  +++|.+|.  .|+.. .+..  ....    ......+.
T Consensus       162 ~l~~~~~~-li~D~a~~-~~~~~--~~~~~~~----~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (382)
T 4hvk_A          162 EVLAGKAA-LHIDATAS-VGQIE--VDVEKIG----ADMLTISSNDIYGPKGVGALWIRKEAKLQPVILGGGQENGLRSG  233 (382)
T ss_dssp             HHHSSSSE-EEEECTTT-BTTBC--CCHHHHT----CSEEEEESGGGTSCTTCEEEEEETTCCCCCSSCSSCTGGGTSCS
T ss_pred             HHHHHcCE-EEEEhHHh-cCCCC--CCchhcC----CCEEEEeHHHhcCCCceEEEEEcCccCcCcccccCCCcCccccC
Confidence            47999999 99999975 33221  1122233    6777  55597752  23333 2221  1110    00111233


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++.++++..++++.+++  ++..++.+++.+++.+.|+++
T Consensus       234 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  275 (382)
T 4hvk_A          234 SENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI  275 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            5678888888888887654  456677888888888888754

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=98.06  E-value=1.9e-05  Score=57.75  Aligned_cols=100  Identities=8%  Similarity=0.110  Sum_probs=58.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC-ccccc-cccccc----cccc-------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG-GYFLK-PEFVPQ----QAYR-------   64 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g-G~~~~-~~~~~~----~~~~-------   64 (119)
                      +|+++||+++|+||+|..+.+.        ..+. ..|++  +++|.+| .| |++.. +.+...    .+..       
T Consensus       160 ~i~~~~~~~li~D~a~~~~~~~--------~~~~-~~di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (360)
T 1w23_A          160 NFPEINHAPLIADMSSDILSRP--------LKVN-QFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHI  230 (360)
T ss_dssp             SCCCCCSSCEEEECTTTTTSSC--------CCGG-GCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHH
T ss_pred             cccccCCceEEEechhhcCCCC--------cCcc-cCCEEEEEcccccCCCCcEEEEEcHHHHhhcccCCcchhhhhhhh
Confidence            3567899999999998633221        1111 12777  4569997 33 55443 222221    1110       


Q ss_pred             -eeecc-CCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 -VFNTW-MGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 -~~~T~-~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                       ..+++ ..++.++.++.++++.+.+.    ++.++.+++.+++.+.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  281 (360)
T 1w23_A          231 KSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES  281 (360)
T ss_dssp             HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence             11222 34666777778888887643    45667778888888888765

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=98.05  E-value=2.7e-06  Score=65.74  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=56.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhcc-----Cccccc-cccccccc-c-ceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQL-----GGYFLK-PEFVPQQA-Y-RVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg~-----gG~~~~-~~~~~~~~-~-~~~~T~~   70 (119)
                      ++|++||+++|+||+|+.. ...     ......  +|+++  ++|.+++     +|++.. +.+..... . ..+++ .
T Consensus       224 ~la~~~g~~livD~a~~~~-~~~-----~~~~~g--~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~-~  294 (445)
T 1qgn_A          224 KLCHEKGALVCIDGTFATP-LNQ-----KALALG--ADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGG-A  294 (445)
T ss_dssp             HHHHHTTCEEEEECTTTCT-TTC-----CTTTTT--CSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCC-C
T ss_pred             HHHHHcCCEEEEECCCccc-ccC-----CccccC--CEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCC-C
Confidence            4799999999999998521 111     122333  89885  8999962     344443 22322111 0 11122 3


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..+..++..++.+.  ...++..++.+++.+.|++.
T Consensus       295 ~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~  331 (445)
T 1qgn_A          295 LNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEAH  331 (445)
T ss_dssp             CCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            47887777766666553  23344555667777777664

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=98.04  E-value=3.9e-06  Score=65.24  Aligned_cols=109  Identities=20%  Similarity=0.182  Sum_probs=61.3

Q ss_pred             ChhhhhCCEEEEccccccccCCC--cchh----hhhcCC-CCCCC-EE--EEchhh-c----cCccccc----ccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--KFWC----HEHFDL-EESPD-IV--TFSKKM-Q----LGGYFLK----PEFVPQQ   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~~~~----~~~~g~-~~~pD-i~--t~gK~l-g----~gG~~~~----~~~~~~~   61 (119)
                      ++|++||+++|+||++..+...+  ....    ...++. ...++ ++  +|+|++ |    -+|++..    ..+.+..
T Consensus       264 ~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l  343 (500)
T 3tcm_A          264 KFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQI  343 (500)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHH
T ss_pred             HHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHH
Confidence            36999999999999987642211  1111    122332 21123 33  899998 3    2355542    2332211


Q ss_pred             ccceeeccCCCHHHHHHHHHHHH-----------HHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 AYRVFNTWMGDPGKVLLLKGIID-----------TIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~~~~~~T~~~~p~~~a~a~a~l~-----------~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ......++..++++.+++.++++           +.++ ++++++++++.+++.+.|+++
T Consensus       344 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  403 (500)
T 3tcm_A          344 YKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL  403 (500)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            11111233567777777777664           3332 356677888888888888775

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.02  E-value=1.2e-05  Score=59.12  Aligned_cols=102  Identities=16%  Similarity=0.064  Sum_probs=62.2

Q ss_pred             Chhhhh--CCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cC-ccccc-ccccc-cc----------
Q psy4800           1 MYEKYH--GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LG-GYFLK-PEFVP-QQ----------   61 (119)
Q Consensus         1 ~l~~~~--~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~g-G~~~~-~~~~~-~~----------   61 (119)
                      ++|++|  |+++|+||+|+ +|...  ...+.+  .  +|+++  ++|+++  .| |++.. +.+.. ..          
T Consensus       161 ~~~~~~~~~~~li~D~a~~-~~~~~--~~~~~~--~--~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~  233 (385)
T 2bkw_A          161 QAIKQTSPETFFVVDAVCS-IGCEE--FEFDEW--G--VDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHG  233 (385)
T ss_dssp             HHHHHHCTTSEEEEECTTT-TTTSC--CCTTTT--T--CSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSC
T ss_pred             HHHHhhCCCCEEEEECccc-cCCcc--cccccc--C--ceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCc
Confidence            479999  99999999985 43321  111212  2  78874  579874  22 44432 22221 10          


Q ss_pred             ---------c---cce---ee-ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHH-Hhh
Q psy4800          62 ---------A---YRV---FN-TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVR-LGL  109 (119)
Q Consensus        62 ---------~---~~~---~~-T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L-~~l  109 (119)
                               +   .+.   .. .+..|+.+++++.++++.+.+.   +..++.+++.+++.+.| +++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  301 (385)
T 2bkw_A          234 YFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL  301 (385)
T ss_dssp             STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             eeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     0   000   01 1357788888888999987643   45677888889999988 664

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=98.02  E-value=1.6e-05  Score=57.88  Aligned_cols=100  Identities=11%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             Chhhhh-CCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc-c-C-ccccc-cccccc----c-----ccc
Q psy4800           1 MYEKYH-GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ-L-G-GYFLK-PEFVPQ----Q-----AYR   64 (119)
Q Consensus         1 ~l~~~~-~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg-~-g-G~~~~-~~~~~~----~-----~~~   64 (119)
                      ++|++| |+++|+||+|. +|...       ..+. ..|+++  ++|.++ . | |++.. +.+...    .     ..+
T Consensus       154 ~la~~~p~~~li~D~a~~-~~~~~-------~~~~-~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~  224 (362)
T 3ffr_A          154 TFRDKNKDALIFVDAVSS-LPYPK-------FDWT-KIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGT  224 (362)
T ss_dssp             TSGGGSTTSEEEEECTTT-TTSSC-------CCTT-SCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHhCCCCEEEEecccc-cCCcc-------cChh-HCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcc
Confidence            589999 99999999975 32211       1221 178874  559995 1 2 33332 222110    0     000


Q ss_pred             e------------ee-ccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 V------------FN-TWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~------------~~-T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .            +. .+..++.+..+..++++.+.++   +..++.+++.+++.+.|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  285 (362)
T 3ffr_A          225 YHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS  285 (362)
T ss_dssp             TTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Confidence            0            11 3356777777788888877653   45667778888888888765

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=97.99  E-value=1.2e-06  Score=64.00  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=53.3

Q ss_pred             ChhhhhCCEEEEcccccccc--CCCcchhhhhcCCCCCCCEE--EEchhhc-cC-cccc-ccccccccccc--eeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGG--PCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG-GYFL-KPEFVPQQAYR--VFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G--r~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g-G~~~-~~~~~~~~~~~--~~~T~~~   71 (119)
                      ++|++||+++|+||++..+.  ..|..  ....++...+|++  +++|+.+ .| |++. .+.+.+.....  ..++...
T Consensus       167 ~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~  244 (356)
T 1v72_A          167 DVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSS  244 (356)
T ss_dssp             HHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTTCCCS
T ss_pred             HHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHHhhHHHHhhccCchhh
Confidence            47999999999999986321  11111  1111111126766  5789732 34 4654 33333211100  1111111


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .  +..++.++++.++++   +..++++++.+++++.|+++
T Consensus       245 ~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (356)
T 1v72_A          245 K--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL  283 (356)
T ss_dssp             S--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             h--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            1  122334456666543   34566778888888888653

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=97.98  E-value=9.8e-06  Score=60.38  Aligned_cols=107  Identities=18%  Similarity=0.151  Sum_probs=55.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCc---chhhhhc-CCCCCCCE---EEEchhhc-cC---ccccc---c-c----ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK---FWCHEHF-DLEESPDI---VTFSKKMQ-LG---GYFLK---P-E----FVPQQ   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~---~~~~~~~-g~~~~pDi---~t~gK~lg-~g---G~~~~---~-~----~~~~~   61 (119)
                      ++|++||+++|+||++.+++..+.   .+....+ +..  +++   .+|+|.+| .|   |+...   + .    +....
T Consensus       202 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~  279 (401)
T 7aat_A          202 SVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQG--IDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQL  279 (401)
T ss_dssp             HHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT--CCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcC--CcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHH
Confidence            479999999999999987755442   2222211 222  333   48999986 34   55321   1 1    22211


Q ss_pred             cccee-eccCCCHHHHHHHHHHHHH-------Hh-hhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 AYRVF-NTWMGDPGKVLLLKGIIDT-------IH-NENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ~~~~~-~T~~~~p~~~a~a~a~l~~-------i~-~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..... .+...+..+.+++...++-       .+ -++.+++++++-+++.+.|+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          280 KILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11111 2223333444444333321       11 1234556777777777777765

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=97.97  E-value=3e-05  Score=60.03  Aligned_cols=108  Identities=19%  Similarity=0.091  Sum_probs=58.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcccc-cc-cccc----ccccceee--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFL-KP-EFVP----QQAYRVFN--   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~-~~-~~~~----~~~~~~~~--   67 (119)
                      ++|++||+++++|+++.|+......+.....++. .+|+++++  |.++   ..|++. .+ .+..    ..+.+..+  
T Consensus       269 ~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~-~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~  347 (504)
T 2okj_A          269 DICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE-RANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPD  347 (504)
T ss_dssp             HHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG-GCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSC
T ss_pred             HHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc-cCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCc
Confidence            4799999999999998865332222112223442 38999886  9885   123333 32 2211    11111110  


Q ss_pred             c----------------cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 T----------------WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T----------------~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +                ...+++.+.++++++..-.-++..++..++.++|.+.|+++
T Consensus       348 ~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~  405 (504)
T 2okj_A          348 KQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR  405 (504)
T ss_dssp             CSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            0                01235555555555432111235566778888888888764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=97.96  E-value=1.1e-06  Score=65.84  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccc-ccccccccc-ceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLK-PEFVPQQAY-RVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~-~~~~~~~~~-~~~~T~~~~p~   74 (119)
                      ++|++||+++|+||++.-+ ..|...........  +|++  +++|.++  .+|++.. +.+.+.... ....+...+|+
T Consensus       166 ~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~--~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~  242 (374)
T 2aeu_A          166 NTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLG--ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPP  242 (374)
T ss_dssp             HHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHT--CSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHH
T ss_pred             HHHHHcCCEEEEECCcccc-cccccccCCccccC--CcEEEecCcccccCcceEEEEECHHHHHHHHHhhccccCCCCHH
Confidence            4799999999999986422 11111000011123  7887  6999984  3466543 233221111 11112256899


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHH----HHHHHh
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDIL----LNVRLG  108 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l----~~~L~~  108 (119)
                      .++++.++|+.+.. +..++..++.+.+    ++.|++
T Consensus       243 ~~~a~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  279 (374)
T 2aeu_A          243 LLAGIYRALKNFNL-ERIRKAFERAKNFDLSKIEKLNK  279 (374)
T ss_dssp             HHHHHHHHHHHCCH-HHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988643 2334444445455    455544

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.95  E-value=1.2e-05  Score=61.13  Aligned_cols=106  Identities=14%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             ChhhhhCCEEEEcccccc----------ccCCCc---chhhhhcCCCCCCCE--EEEchhhc-c-Cccccc-cc-ccc--
Q psy4800           1 MYEKYHGSALLIDEVQTG----------GGPCGK---FWCHEHFDLEESPDI--VTFSKKMQ-L-GGYFLK-PE-FVP--   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG----------~Gr~G~---~~~~~~~g~~~~pDi--~t~gK~lg-~-gG~~~~-~~-~~~--   59 (119)
                      ++|++||++||+|++|..          .+..|.   .+..+.+. .  +|+  .+++|+++ . ||++.. +. +++  
T Consensus       211 ~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~d~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~  287 (467)
T 2oqx_A          211 SIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-Y--ADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY  287 (467)
T ss_dssp             HHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-G--CSEEEEESSSTTCCSSCEEEEECSGGGHHHH
T ss_pred             HHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhc-c--CCeEEEecccccCCCCceEEEecChhHHHHH
Confidence            489999999999987643          133333   22111111 1  454  58999986 3 666553 23 221  


Q ss_pred             -c-cc----cceeeccCCCHHHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          60 -Q-QA----YRVFNTWMGDPGKVLLLKG-IIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 -~-~~----~~~~~T~~~~p~~~a~a~a-~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                       . .+    .....++++.+....++++ .++...+++..++.+++.+++++.|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (467)
T 2oqx_A          288 TECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI  344 (467)
T ss_dssp             HHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC
Confidence             1 11    1112233443333332332 2232222345566778899999999876

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=97.93  E-value=1.3e-05  Score=65.73  Aligned_cols=109  Identities=11%  Similarity=0.002  Sum_probs=65.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch--hhhhcC--CC-CCCCE-E--EEchhhc--c-Ccccc-ccc--ccc-----cc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW--CHEHFD--LE-ESPDI-V--TFSKKMQ--L-GGYFL-KPE--FVP-----QQ   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~--~~~~~g--~~-~~pDi-~--t~gK~lg--~-gG~~~-~~~--~~~-----~~   61 (119)
                      ++|++||+++++||+|.+.-..+..+  .....+  .+ ..+.+ +  +++|+++  . ||++. .+.  ..+     ..
T Consensus       335 ~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~  414 (755)
T 2vyc_A          335 DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQA  414 (755)
T ss_dssp             HHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHH
T ss_pred             HHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHH
Confidence            47999999999999986321122111  011122  11 01111 3  7899985  2 44443 222  111     11


Q ss_pred             ccceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhh
Q psy4800          62 AYRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        62 ~~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      ...+.+| +.+...+++..++++.+.++   ++.+++.++.++++++|+++.
T Consensus       415 ~~~~~s~-sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~  465 (755)
T 2vyc_A          415 YMMHATT-SPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_dssp             HHHTSCS-SCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1122233 67788888888899988653   578889999999999998863

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=97.91  E-value=4.1e-05  Score=56.26  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=59.2

Q ss_pred             hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC-ccccc-ccccccc-c--cce----------ee
Q psy4800           6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG-GYFLK-PEFVPQQ-A--YRV----------FN   67 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g-G~~~~-~~~~~~~-~--~~~----------~~   67 (119)
                      ||+++|+||+|. +|..  .     .++.. .|++  +++|.+| .| |++.. +.+.+.. +  ..+          ..
T Consensus       166 ~~~~vivD~a~~-~~~~--~-----~~~~~-~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  236 (362)
T 2c0r_A          166 GSVPLIGDMSSD-ILSR--P-----FDLNQ-FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSL  236 (362)
T ss_dssp             TTSCEEEECTTT-TTSS--C-----CCGGG-CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTC
T ss_pred             CCCEEEEEChhh-ccCC--c-----cchhH-CcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhHHHHhhccCc
Confidence            799999999975 3321  1     12221 3765  7899997 34 66543 3332211 1  011          12


Q ss_pred             ccCCCHHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 TWMGDPGKVLLLKGIIDTIHN----ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 T~~~~p~~~a~a~a~l~~i~~----~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .++.++.+.+++.++|+.+.+    ++..++.+++.+++++.|+++
T Consensus       237 ~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  282 (362)
T 2c0r_A          237 YNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQS  282 (362)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            335677888888999998765    345667788888888888765

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=97.90  E-value=2.1e-05  Score=60.45  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=56.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhcc-----Ccccc--ccc-cc--------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQL-----GGYFL--KPE-FV--------------   58 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~-----gG~~~--~~~-~~--------------   58 (119)
                      ++|++||+++|+||++. .   |.......+|.+  ..+.+++|.+++     ||+++  .+. +.              
T Consensus       191 ~la~~~g~~livD~a~~-~---~~~~~~~~~g~d--iv~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~  264 (430)
T 3ri6_A          191 KVVHAKGIPLVVDTTMT-P---PYLLEAKRLGVD--IEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP  264 (430)
T ss_dssp             HHHHTTTCCEEEECTTS-C---TTTCCGGGGTCS--EEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG
T ss_pred             HHHHHcCCEEEEECCCc-c---cccCChHHcCCE--EEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch
Confidence            47999999999999975 2   222222234533  334478899852     45554  211 10              


Q ss_pred             ----cccccceee--ccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          59 ----PQQAYRVFN--TWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        59 ----~~~~~~~~~--T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                          .........  ....+|..+..++..++.+.  ...++..++.+++.+.|++
T Consensus       265 ~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~  318 (430)
T 3ri6_A          265 MAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLS  318 (430)
T ss_dssp             GHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhC
Confidence                000000111  11357888777777777664  2445667777777777754

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.87  E-value=5.7e-06  Score=62.40  Aligned_cols=99  Identities=14%  Similarity=0.080  Sum_probs=57.8

Q ss_pred             Chhhhh----CCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-C----ccccc--ccccccc-cccee
Q psy4800           1 MYEKYH----GSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-G----GYFLK--PEFVPQQ-AYRVF   66 (119)
Q Consensus         1 ~l~~~~----~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-g----G~~~~--~~~~~~~-~~~~~   66 (119)
                      ++|++|    |+++|+||+|+.+.. ....   .++    +|++  +++|.+|. |    |++..  ..+.+.. .....
T Consensus       162 ~la~~~~~~~~~~livD~a~~~~~~-~~~~---~~~----~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~  233 (393)
T 1n8p_A          162 DLIKKHAAGQDVILVVDNTFLSPYI-SNPL---NFG----ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA  233 (393)
T ss_dssp             HHHHHHTTTTTCEEEEECTTTHHHH-CCGG---GGT----CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeCCcccccc-CCHH---HcC----CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh
Confidence            479999    999999999975433 2221   123    7877  89999972 3    66553  2332211 11111


Q ss_pred             eccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .....+|..++++.++++.+.  ...++..++.+.+.+.|++.
T Consensus       234 ~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  274 (393)
T 1n8p_A          234 IGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLAAD  274 (393)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTSC
T ss_pred             cCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHhC
Confidence            112456888777777776543  23445556666666666553

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=97.87  E-value=3.2e-05  Score=59.11  Aligned_cols=101  Identities=14%  Similarity=0.067  Sum_probs=57.5

Q ss_pred             Chhhh--hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccccc-cccc-----cccce
Q psy4800           1 MYEKY--HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKPE-FVPQ-----QAYRV   65 (119)
Q Consensus         1 ~l~~~--~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~~-~~~~-----~~~~~   65 (119)
                      ++|++  ||+++|+||++. .+..+.    +.....  .|++  +++|.+|+     ||+++.+. +.+.     .....
T Consensus       187 ~la~~~~~~~~livD~a~~-~~~~~~----~p~~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~  259 (409)
T 3jzl_A          187 VFVKNINPEVIVFVDNCYG-EFVEYQ----EPPEVG--ADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGI  259 (409)
T ss_dssp             HHHHHHCTTCEEEEECTTC-TTTSSC----CSGGGT--CSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTT
T ss_pred             HHHHhhCCCCEEEEeCCcc-cccccC----CccccC--CeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccc
Confidence            47899  999999999964 222111    111112  6877  89999962     46665432 2221     11222


Q ss_pred             eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          66 FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        66 ~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      ..+.+..+..+.+++..++.+  +...++..++.+++.+.|+++.
T Consensus       260 g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g  302 (409)
T 3jzl_A          260 GREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFG  302 (409)
T ss_dssp             GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCC
Confidence            223233332233344444333  3567778899999999998863

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=97.83  E-value=1.9e-05  Score=61.20  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=58.8

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-ccc---------------c
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFV---------------P   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~---------------~   59 (119)
                      ++|++||+++|+||+|. |+-..|..   . ..+. .+|++  +++|+|+  -||++..+ .+.               .
T Consensus       215 ~ia~~~g~~livD~ah~~g~~~~~~~---~-~p~~-~~div~~s~~K~l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~  289 (483)
T 1rv3_A          215 KIADENGAYLMADMAHISGLVVAGVV---P-SPFE-HCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLES  289 (483)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHHHTSS---C-CGGG-TCSEEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHH
T ss_pred             HHHHHcCCEEEEEccchhcccccCCC---C-CCCC-CCcEEEecCcccCCCCCceEEEEcchhhhhccccCcchhhHHHH
Confidence            47999999999999985 43111110   0 0000 26888  4569984  35776543 211               0


Q ss_pred             c-cc-cceeeccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          60 Q-QA-YRVFNTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ~-~~-~~~~~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      . .. .+.+..-+.+....++..++++.+.+   ++..+++.++.+++.+.|+++
T Consensus       290 ~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (483)
T 1rv3_A          290 LINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL  344 (483)
T ss_dssp             HHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence            0 00 00011112334455555667877654   345677888899999998875

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=97.82  E-value=1.9e-05  Score=57.54  Aligned_cols=102  Identities=13%  Similarity=0.059  Sum_probs=55.2

Q ss_pred             ChhhhhCCEEEEccccccccC---CCcchhhhhcCCCCCCCE--EEEchhhc--cCccccc-cccccc---cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGP---CGKFWCHEHFDLEESPDI--VTFSKKMQ--LGGYFLK-PEFVPQ---QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr---~G~~~~~~~~g~~~~pDi--~t~gK~lg--~gG~~~~-~~~~~~---~~~~~~~T~   69 (119)
                      ++|++||+++|+||+|. ++.   .|..  .......  .|.  ++++|+++  .|+++.. +.+...   ....+.+++
T Consensus       160 ~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~~--~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  234 (347)
T 1jg8_A          160 TIAKEHGINVHIDGARI-FNASIASGVP--VKEYAGY--ADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGM  234 (347)
T ss_dssp             HHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHHT--CSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhccc--ccEEEEecccccCCCceEEEEcCHHHHHHHHHHHHHcCCch
Confidence            47899999999999874 221   1211  0111111  454  47999986  3434432 223221   111222343


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+++.++++..+|+...+ . .++..++.+++++.|+++
T Consensus       235 ~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~l~~~L~~~  272 (347)
T 1jg8_A          235 RQAGVLAAAGIIALTKMVD-R-LKEDHENARFLALKLKEI  272 (347)
T ss_dssp             SSTHHHHHHHHHHHHHSST-T-HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHhc
Confidence            4566777777777765432 2 333445667888888775

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=97.81  E-value=2.2e-05  Score=59.39  Aligned_cols=98  Identities=16%  Similarity=0.109  Sum_probs=57.4

Q ss_pred             ChhhhhC-CEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-C----ccccc--ccccccc-ccceeecc
Q psy4800           1 MYEKYHG-SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-G----GYFLK--PEFVPQQ-AYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~-~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-g----G~~~~--~~~~~~~-~~~~~~T~   69 (119)
                      ++|++|| +++|+||++..+ .....     ....  +|++  +++|.+++ |    |++..  +.+.+.. ......+.
T Consensus       175 ~la~~~g~~~livD~~~~~~-~~~~~-----~~~~--~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~  246 (403)
T 3cog_A          175 HIVHKHGDIILVVDNTFMSP-YFQRP-----LALG--ADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGA  246 (403)
T ss_dssp             HHHTSSSCCEEEEECTTTCT-TTCCT-----TTTT--CSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCCEEEEECCCccc-ccCCc-----cccC--CeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCC
Confidence            4799999 999999998753 22222     2233  7887  89999962 2    55543  2332211 11122233


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|+.+.++...++.+.  ...++..++...+.+.|++
T Consensus       247 ~~~~~~~~~~~~~l~~l~--~r~~~~~~n~~~l~~~l~~  283 (403)
T 3cog_A          247 VPSPIDCYLCNRGLKTLH--VRMEKHFKNGMAVAQFLES  283 (403)
T ss_dssp             CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhc
Confidence            578988888877776543  2334445555555555544

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=97.75  E-value=0.00017  Score=53.83  Aligned_cols=99  Identities=19%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc-cCc--ccc-cccccccc----------ccce
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ-LGG--YFL-KPEFVPQQ----------AYRV   65 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg-~gG--~~~-~~~~~~~~----------~~~~   65 (119)
                      +++.||+++|+||+|..+.+.        .++. .+|+++++  |.++ .||  ++. .+.+.+..          +.+.
T Consensus       187 i~~~~~~~vivD~a~~~~~~~--------~~~~-~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~  257 (398)
T 2fyf_A          187 PEGSDDALVVIDATSGAGGLP--------VDIA-ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFL  257 (398)
T ss_dssp             CTTCC-CEEEEECTTTTTTSC--------CCGG-GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGG
T ss_pred             hhhhcCCeEEEEeccccCCcc--------cCcc-cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEE
Confidence            455589999999998633221        1111 27888555  9997 333  222 22221110          0000


Q ss_pred             -----------eec-cCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          66 -----------FNT-WMGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        66 -----------~~T-~~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                                 ..+ +..+..+.+++.++|+.+.++    +..++.+++.+++.+.|+++
T Consensus       258 ~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~  317 (398)
T 2fyf_A          258 SLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER  317 (398)
T ss_dssp             CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc
Confidence                       122 235666777788888877643    35667778888888888765

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=97.74  E-value=4.4e-05  Score=57.36  Aligned_cols=100  Identities=12%  Similarity=0.059  Sum_probs=56.9

Q ss_pred             ChhhhhCCEEEEccccccccCC-CcchhhhhcCCCCCCCEE--EE--chhhcc--Ccccccc--ccccc-----cc----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPC-GKFWCHEHFDLEESPDIV--TF--SKKMQL--GGYFLKP--EFVPQ-----QA----   62 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~-G~~~~~~~~g~~~~pDi~--t~--gK~lg~--gG~~~~~--~~~~~-----~~----   62 (119)
                      ++|++||+++|+||+|+.+.+. |..     .+..  +|+.  +|  +|.++.  +|+++..  .+.+.     ..    
T Consensus       151 ~~~~~~~~~li~D~a~~~~~~~~~~~-----~~~~--~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~  223 (418)
T 2c81_A          151 EIAQEHNLFVIEDCAQSHGSVWNNQR-----AGTI--GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVY  223 (418)
T ss_dssp             HHHHHTTCEEEEECTTCTTCEETTEE-----TTSS--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred             HHHHHCCCEEEEECcccccCccCCEe-----cccc--cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccc
Confidence            4799999999999998754321 221     2222  4554  55  999962  4555532  22110     00    


Q ss_pred             ---------cce---------eeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ---------YRV---------FNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ---------~~~---------~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                               .+.         ..++..+++.++.....++.++  +..++.+++.+++.+.|+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  286 (418)
T 2c81_A          224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELD--DKNAIREKNAMFLNDALSKI  286 (418)
T ss_dssp             CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTS
T ss_pred             cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence                     011         1122356776666555555443  45667777888888888764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=97.63  E-value=0.00012  Score=56.20  Aligned_cols=99  Identities=13%  Similarity=0.017  Sum_probs=56.1

Q ss_pred             Chhhh--hCCEEEEccccccccCCC-cchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-----cccc
Q psy4800           1 MYEKY--HGSALLIDEVQTGGGPCG-KFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-----QAYR   64 (119)
Q Consensus         1 ~l~~~--~~~lli~DEv~tG~Gr~G-~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-----~~~~   64 (119)
                      ++|++  ||+++|+||++. .+..+ ...   .++    .|++  +++|.+|+     ||+++.+ .+.+.     ....
T Consensus       204 ~ia~~~~~g~~livD~a~~-~~~~~~~p~---~~g----aDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~  275 (427)
T 3hvy_A          204 KSIREVNENVIVFVDNCYG-EFVEEKEPT---DVG----ADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPG  275 (427)
T ss_dssp             HHHHHHCSSSEEEEECTTC-TTTSSSCGG---GGT----CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT
T ss_pred             HHHHHhCCCCEEEEECCcc-ccccCCCCc---ccC----CeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCC
Confidence            47899  899999999974 22211 111   122    5776  89999963     3665543 23221     1122


Q ss_pred             eeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          65 VFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 ~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+.+.+.++..+..++..++.+  +...++..++..++.+.|+++
T Consensus       276 ~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~  318 (427)
T 3hvy_A          276 IGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA  318 (427)
T ss_dssp             TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC
Confidence            2222222222233344444333  456778889999999999876

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=97.63  E-value=0.00012  Score=55.75  Aligned_cols=98  Identities=13%  Similarity=0.027  Sum_probs=57.1

Q ss_pred             Chhhh--hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc-c-ceeec
Q psy4800           1 MYEKY--HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA-Y-RVFNT   68 (119)
Q Consensus         1 ~l~~~--~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~-~-~~~~T   68 (119)
                      ++|++  ||+++|+||+|.- +......     ...  +|++  +++|.+++     +|++..+ .+.+... . ....+
T Consensus       191 ~la~~~~~g~~livD~a~a~-~~~~~p~-----~~g--~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~  262 (415)
T 2fq6_A          191 AAVRSVVPDAIIMIDNTWAA-GVLFKAL-----DFG--IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQ  262 (415)
T ss_dssp             HHHHHHCTTCEEEEECTTTT-TTSSCGG-----GGT--CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTC
T ss_pred             HHHHhhcCCCEEEEECCCcc-cccCCcc-----ccC--CeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCC
Confidence            47999  9999999999852 1112221     122  7887  78999962     4555432 2222110 0 11122


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                       ..+|..+..++..++.+.  ...++..++.+.+.+.|++.
T Consensus       263 -~~~~~~a~~~~~~l~~l~--~r~~~~~~n~~~l~~~L~~~  300 (415)
T 2fq6_A          263 -MVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLAEH  300 (415)
T ss_dssp             -CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred             -CCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHcC
Confidence             456777766666666553  34455666777777777664

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=97.61  E-value=8.2e-05  Score=56.99  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCc-chhhhhcCCCCCCCEEEE--chhhc---cCccccc-c-ccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK-FWCHEHFDLEESPDIVTF--SKKMQ---LGGYFLK-P-EFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~-~~~~~~~g~~~~pDi~t~--gK~lg---~gG~~~~-~-~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++||+++++||++.++ -.|. ....+.....  +|++++  .|.++   +.|++.. + .+... .+.+.+.+ .+
T Consensus       255 ~la~~~g~~v~vD~A~~~~-~~g~~~~~~~~~~~~--~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~-~~  330 (456)
T 2z67_A          255 KICENYDIPHIINGAYAIQ-NNYYLEKLKKAFKYR--VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA-SA  330 (456)
T ss_dssp             HHHHHHTCCEEEECTTTTT-CHHHHHHHHHHHTSC--CSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB-CS
T ss_pred             HHHHHcCCcEEEECcchHH-HHHhhHHHHHhhCCC--CCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC-CC
Confidence            4799999999999997544 2221 1111111113  888854  89753   2344443 2 23221 22222222 33


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhh
Q psy4800          72 DPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      +|  ..+..+++..+..+   +..++..++.+++++.|+++.
T Consensus       331 ~~--~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~  370 (456)
T 2z67_A          331 TP--VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS  370 (456)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33  33444555555432   456778888999999998763

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=97.58  E-value=0.00024  Score=53.20  Aligned_cols=100  Identities=12%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhc-CCCCCCCEEEEc----hhhc--cCccccc-c-ccc-------ccc---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHF-DLEESPDIVTFS----KKMQ--LGGYFLK-P-EFV-------PQQ---   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~-g~~~~pDi~t~g----K~lg--~gG~~~~-~-~~~-------~~~---   61 (119)
                      ++|+ ||+++|.|++|+ +|..   +..... +.-  .|+.+++    |.++  .||+++. + .+.       +..   
T Consensus       150 ~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~--~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~  222 (377)
T 3ju7_A          150 ELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDF--SGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDT  222 (377)
T ss_dssp             HHHH-TTCCBEEECTTC-TTCE---ETTEETTTTC--SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCT
T ss_pred             HHHh-cCCEEEEECCCc-cCCe---ECCEeccCCC--CcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCC
Confidence            4789 999999999985 4322   111112 111  5777665    9885  3455542 1 121       100   


Q ss_pred             ---ccceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 ---AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 ---~~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                         ....+..+..+++.++.+++.++.++  +..++.+++.+++.+.|+++
T Consensus       223 ~~~~~~~g~~~~~~~~~aa~~~~~l~~l~--~~~~~~~~~~~~~~~~L~~~  271 (377)
T 3ju7_A          223 NRECTMMGFNCKMSEYAAAIGIATMKKWD--DKLKERTRISEWYKQLLQSN  271 (377)
T ss_dssp             TSCBCSSCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             CCceeeccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence               01123355678998888888877664  35667778888888888775

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=97.55  E-value=4.3e-05  Score=58.81  Aligned_cols=99  Identities=10%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             Chhhh--hCCEEEEccccccccCC-CcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccc-----cccc
Q psy4800           1 MYEKY--HGSALLIDEVQTGGGPC-GKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQ-----QAYR   64 (119)
Q Consensus         1 ~l~~~--~~~lli~DEv~tG~Gr~-G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~-----~~~~   64 (119)
                      ++|++  ||+++|+||++.- +.. ....   ..+    .|++  +++|.+|+     ||+++.+ .+.+.     ....
T Consensus       204 ~la~~~~~g~~livD~a~~~-~~~~~~p~---~~g----aDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~  275 (427)
T 3i16_A          204 DCVKNIRKDIICFVDNCYGE-FMDTKEPT---DVG----ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG  275 (427)
T ss_dssp             HHHHHHCTTSEEEEECTTTT-TSSSSCGG---GGT----CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT
T ss_pred             HHHHHhCCCCEEEEECCCcc-ccccCCcc---ccC----CeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc
Confidence            47899  9999999999742 221 1111   122    5776  89999963     3665543 23221     1111


Q ss_pred             eeeccCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhhh
Q psy4800          65 VFNTWMGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        65 ~~~T~~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      .+.+ .++...  ++..+++-++. +...++..++..++.+.|+++.
T Consensus       276 ~g~~-~~~~~~--~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g  319 (427)
T 3i16_A          276 IGGE-CGSTFG--VVRSMYQGLFLAPHISMEALKGAILCSRIMELAG  319 (427)
T ss_dssp             TGGG-CCCCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCcc-CCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2222 121122  12333444433 4567788889999999998763

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=97.52  E-value=0.00062  Score=52.53  Aligned_cols=108  Identities=15%  Similarity=0.053  Sum_probs=55.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc----cCccccccc--ccc---ccccceee--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ----LGGYFLKPE--FVP---QQAYRVFN--   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg----~gG~~~~~~--~~~---~~~~~~~~--   67 (119)
                      ++|++||+++++|+++.|.-..+..+.....|++ ..|.+++  .|.++    .|++...+.  +..   ..+.+...  
T Consensus       265 ~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~-~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~  343 (481)
T 4e1o_A          265 PICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE-YADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHAN  343 (481)
T ss_dssp             HHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG-GCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTT
T ss_pred             HHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc-cCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcc
Confidence            4799999999999998653222222221123442 3688865  68874    223333321  110   01111110  


Q ss_pred             ----------cc-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 ----------TW-MGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 ----------T~-~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                +. .+.+.......++++.+..   ++..++..++.+++++.|+++
T Consensus       344 ~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  399 (481)
T 4e1o_A          344 SGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND  399 (481)
T ss_dssp             TTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                      00 1111222333444544433   345667788888999888765

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=97.48  E-value=4e-05  Score=59.59  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=55.9

Q ss_pred             ChhhhhCCEEEEccccccccCCC--cchhhhh----cCCC--CCCCE---EEEchhh-c----cCcccc----ccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--KFWCHEH----FDLE--ESPDI---VTFSKKM-Q----LGGYFL----KPEFVPQ   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~~~~~~~----~g~~--~~pDi---~t~gK~l-g----~gG~~~----~~~~~~~   60 (119)
                      ++|++||+++|+||++..+...+  .......    .+..  ....+   -+|+|++ |    -+|++.    .+.+.+.
T Consensus       262 ~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~  341 (498)
T 3ihj_A          262 HFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQ  341 (498)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHH
T ss_pred             HHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHH
Confidence            47999999999999987542111  1111111    1100  00222   2899998 3    236654    2233221


Q ss_pred             cccceeeccCCCHHHHHHHHHHHH-----------HHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 QAYRVFNTWMGDPGKVLLLKGIID-----------TIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ~~~~~~~T~~~~p~~~a~a~a~l~-----------~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .......+...++++..++.+.++           .+++ ...+++++++.+++.+.|+++
T Consensus       342 l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  402 (498)
T 3ihj_A          342 LVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV  402 (498)
T ss_dssp             HHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            111111222345565555555442           2322 345567788888888888764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=97.46  E-value=0.00011  Score=56.88  Aligned_cols=78  Identities=18%  Similarity=0.104  Sum_probs=44.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc--C---cccccc--ccccccccce-eeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL--G---GYFLKP--EFVPQQAYRV-FNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~--g---G~~~~~--~~~~~~~~~~-~~T~~   70 (119)
                      ++|++||+++|+||+|.. |.....  .+   ..  +|++  +++|.+++  |   |++...  .+.+...... .....
T Consensus       241 ~la~~~gi~livDea~~~-g~~~~~--~~---~~--~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~  312 (464)
T 1ibj_A          241 EMAHAQGALVLVDNSIMS-PVLSRP--LE---LG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  312 (464)
T ss_dssp             HHHHTTTCEEEEECTTTC-TTTCCG--GG---TT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHcCCEEEEECCCcc-cccCCh--hh---cC--CEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCC
Confidence            479999999999999852 211111  11   23  7877  69999852  1   444432  2322111111 11224


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy4800          71 GDPGKVLLLKGIIDTI   86 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i   86 (119)
                      .+|+++.++.++|+.+
T Consensus       313 ~~~~~~~a~~~al~~~  328 (464)
T 1ibj_A          313 LAPFDCWLCLRGIKTM  328 (464)
T ss_dssp             CCHHHHHHHHHHHTTH
T ss_pred             CCHHHHHHHHhchhhH
Confidence            5788888777776543

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=97.40  E-value=0.00055  Score=53.33  Aligned_cols=108  Identities=15%  Similarity=0.099  Sum_probs=55.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc----cCccccccc-cc----cccccceee--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ----LGGYFLKPE-FV----PQQAYRVFN--   67 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg----~gG~~~~~~-~~----~~~~~~~~~--   67 (119)
                      ++|++||+++++|+++.|.-.....+-....|+. ..|.+  ...|.++    .|+++..+. +.    ...+.+.+.  
T Consensus       272 ~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~-~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  350 (511)
T 3vp6_A          272 DICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE-RANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQD  350 (511)
T ss_dssp             HHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG-GCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSS
T ss_pred             HHHHHcCCEEEEEccchhhHhhChhhhhhccCCc-cCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcc
Confidence            4899999999999998653111111111112332 36877  4668874    122333221 11    111111110  


Q ss_pred             ------------cc-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          68 ------------TW-MGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        68 ------------T~-~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                  |. .+.+..+....++|+.+..   +++.++..++.+++++.|+++
T Consensus       351 ~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~  408 (511)
T 3vp6_A          351 KHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR  408 (511)
T ss_dssp             CSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                        10 1112233344455555543   356677888999999999864

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=97.38  E-value=0.00095  Score=51.51  Aligned_cols=108  Identities=16%  Similarity=0.089  Sum_probs=55.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc----cCccccccc-c-cc---cccccee---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ----LGGYFLKPE-F-VP---QQAYRVF---   66 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg----~gG~~~~~~-~-~~---~~~~~~~---   66 (119)
                      ++|++||+++++|+++.|.-..+..+.....+++ ..|.+++  .|.++    .|+++..+. . ..   ..+.+..   
T Consensus       258 ~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~-~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~  336 (475)
T 3k40_A          258 PVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE-SADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDM  336 (475)
T ss_dssp             HHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGG-GCSEEEECHHHHSSCCSSCEEEEESSGGGC---------------
T ss_pred             HHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcc-cCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCc
Confidence            4899999999999998652122221111112432 3688865  58774    223333321 1 11   1111111   


Q ss_pred             ----------eccCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhh
Q psy4800          67 ----------NTWMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ----------~T~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l  109 (119)
                                +...+.+.......++|+.+..   ++..++..++.+++++.|+++
T Consensus       337 ~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~  392 (475)
T 3k40_A          337 QGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD  392 (475)
T ss_dssp             ------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                      1111222233444555665543   345667788889999998875

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=97.20  E-value=0.00041  Score=54.39  Aligned_cols=108  Identities=12%  Similarity=0.027  Sum_probs=58.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc---hhhhhcCCCCCCCEEEEc--hhhc--cCc-ccc-c-cccccccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF---WCHEHFDLEESPDIVTFS--KKMQ--LGG-YFL-K-PEFVPQQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~---~~~~~~g~~~~pDi~t~g--K~lg--~gG-~~~-~-~~~~~~~~~~~~~T~~   70 (119)
                      ++|++||+++++||+|-+.-+....   .+++ +| .  .|+++.|  |-+-  .|| ++. . ..+.+.....+-.|.+
T Consensus       240 eIch~~gIpllVDeAhGah~~~~~~lp~sA~~-~G-r--AD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yPGr~S  315 (501)
T 3hl2_A          240 VICANYDIPHIVNNAYGVQSSKCMHLIQQGAR-VG-R--IDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRAS  315 (501)
T ss_dssp             HHHHHHTCCEEEECTTCTTCHHHHHHHHHHHH-HS-C--CCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSCSCBC
T ss_pred             HHHHHcCCeEEEeCcchhhhhhhhhhHHHHHh-cC-C--CcEEEecccccceeecCceEEEeCCHHHHHHHHHhCCCCCC
Confidence            4899999999999997542111111   1222 34 2  7988655  3331  234 332 2 2222211111112324


Q ss_pred             CCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          71 GDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      +.|..  ....++..+-.   .++.++..++.++|+++|+++...+.
T Consensus       316 ~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~g  360 (501)
T 3hl2_A          316 ASPSL--DVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN  360 (501)
T ss_dssp             SHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44443  22333333322   35667788999999999999987655

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=97.19  E-value=0.00055  Score=51.23  Aligned_cols=101  Identities=18%  Similarity=0.121  Sum_probs=52.3

Q ss_pred             hhhh-hC--CEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-cC---ccccc-c-cccccc-ccceeecc
Q psy4800           2 YEKY-HG--SALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LG---GYFLK-P-EFVPQQ-AYRVFNTW   69 (119)
Q Consensus         2 l~~~-~~--~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~g---G~~~~-~-~~~~~~-~~~~~~T~   69 (119)
                      ||++ |+  +++|+||++. .+.. .... ...+    .+|+  +|+|.+| .|   |++.. + .+.... ......++
T Consensus       177 l~~~~~~~~~~ii~De~y~-~~~~-~~l~-~~~~----~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~  249 (391)
T 3bwn_A          177 VVNRPDDDEAKVIHDFAYY-WPHY-TPIT-RRQD----HDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSI  249 (391)
T ss_dssp             CC-----CCCEEEEECTTC-STTT-SCCC-CCBC----CSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhcCCCEEEEeCCCC-CCCC-Cccc-cCCC----CeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhccccc
Confidence            4555 77  9999999985 2211 1111 0111    3443  8999986 45   66553 2 333211 11112244


Q ss_pred             CCCHHHHHHHHHHHHHHh----------h--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIH----------N--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~----------~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.++++..++.++|+.-.          +  ++.+++++++-+++.+.|+++
T Consensus       250 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  301 (391)
T 3bwn_A          250 GVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES  301 (391)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            667887777777776532          1  134445566666666766654

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=96.90  E-value=0.0071  Score=46.29  Aligned_cols=46  Identities=17%  Similarity=0.044  Sum_probs=27.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg   47 (119)
                      ++|++||+++++|+++.++-.....+.....++. ..|.+++  .|.++
T Consensus       259 ~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~-~adsi~~~~hK~~~  306 (486)
T 1js3_A          259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE-FADSFNFNPHKWLL  306 (486)
T ss_dssp             HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGG-GCSEEEECHHHHSS
T ss_pred             HHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCcc-ccCeeEEchhhhcC
Confidence            4799999999999998653211111111112332 3688764  68874

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=96.78  E-value=0.0023  Score=50.36  Aligned_cols=51  Identities=16%  Similarity=-0.015  Sum_probs=31.0

Q ss_pred             hh--hhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---ccccc
Q psy4800           2 YE--KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK   54 (119)
Q Consensus         2 l~--~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~   54 (119)
                      +|  ++||+++|+||++..|............+..  ..+.+|||.+| .|   |+++.
T Consensus       273 ~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~--i~~~S~SK~~g~~GlRiG~~~~  329 (546)
T 2zy4_A          273 IVAEHRPDLMILTDDVYGTFADDFQSLFAICPENT--LLVYSFSKYFGATGWRLGVVAA  329 (546)
T ss_dssp             HHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGE--EEEEESTTTTTCGGGCEEEEEE
T ss_pred             HHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCE--EEEEeCccccCCCCcceEEEEE
Confidence            56  7899999999999877532222211111111  33559999996 44   66553

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=96.44  E-value=0.0024  Score=49.55  Aligned_cols=111  Identities=11%  Similarity=0.009  Sum_probs=52.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cC-cccc-cc-ccccccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LG-GYFL-KP-EFVPQQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~g-G~~~-~~-~~~~~~~~~~~~T~~~~p   73 (119)
                      ++|++||++|++||+|.+.-+.......+.+.. ...|+++++  |.++  .+ +++. .+ .........+..+-..+|
T Consensus       222 ~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~-~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~~s~Sp  300 (450)
T 3bc8_A          222 VICANYDIPHVVNNAYGLQSSKCMHLIQQGARV-GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASP  300 (450)
T ss_dssp             HHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH-SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHH
T ss_pred             HHHHHCCCeEEEECCCchhhhhhHhHHHHHhcc-cCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcCCcccH
Confidence            489999999999999754322111111111111 127988766  6664  23 3333 12 111111111101112344


Q ss_pred             HHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          74 GKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      . .... .++..+-.+   ++.++..++.+++++.|+++.+++.
T Consensus       301 s-L~l~-~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g  342 (450)
T 3bc8_A          301 S-LDVL-ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHN  342 (450)
T ss_dssp             H-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             H-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence            2 2211 222222112   2333447778899999988875444

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=96.31  E-value=0.01  Score=44.93  Aligned_cols=20  Identities=15%  Similarity=0.094  Sum_probs=17.5

Q ss_pred             ChhhhhCCEEEEcccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG   20 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G   20 (119)
                      ++|++|++++|.||++.+|.
T Consensus       201 ~~~~~~~~~vi~De~Y~~l~  220 (405)
T 3k7y_A          201 EIVLHKKHVIIFDIAYQGFG  220 (405)
T ss_dssp             HHHHHHCCEEEEEESCTTTS
T ss_pred             HHHHHCCeEEEEecCccccc
Confidence            47899999999999998773

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=96.31  E-value=0.0085  Score=46.47  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+.+..++++.+..+   +..++..++.++|.+.|+++
T Consensus       324 ~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~  361 (502)
T 3hbx_A          324 QVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT  361 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            445555666665443   45566778888899888875

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=96.14  E-value=0.0052  Score=47.02  Aligned_cols=20  Identities=10%  Similarity=0.041  Sum_probs=17.9

Q ss_pred             ChhhhhCCEEEEcccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG   20 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G   20 (119)
                      ++|++|++++|.||+..||.
T Consensus       217 ~~~~~~~~~~~~D~~Y~~~~  236 (420)
T 4h51_A          217 SLMLAKHHQVFFDSAYQGYA  236 (420)
T ss_dssp             HHHHHHTCEEEEEESCTTTT
T ss_pred             HHHHhcCceEeeehhhhhhc
Confidence            47899999999999999884

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=95.99  E-value=0.024  Score=42.90  Aligned_cols=19  Identities=16%  Similarity=-0.024  Sum_probs=15.8

Q ss_pred             Chhhhh------CCEEEEccccccc
Q psy4800           1 MYEKYH------GSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~------~~lli~DEv~tG~   19 (119)
                      ++|++|      |+++++|+++.++
T Consensus       211 ~ia~~~~~~~~~~~~l~vD~a~~~~  235 (452)
T 2dgk_A          211 DALDKFQADTGIDIDMHIDAASGGF  235 (452)
T ss_dssp             HHHHHHHHHHCCCCCEEEECTTGGG
T ss_pred             HHHHHHhhccCCCCcEEEEcccHHH
Confidence            368885      9999999998764

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=95.18  E-value=0.18  Score=37.83  Aligned_cols=27  Identities=11%  Similarity=0.134  Sum_probs=17.8

Q ss_pred             HHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          83 IDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        83 l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++.+.++   +..++.+++.+++.+.|+++
T Consensus       334 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  363 (438)
T 1wyu_A          334 LAALGPEGLREVALKSVEMAHKLHALLLEV  363 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5555432   35566778888888888765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=94.35  E-value=0.086  Score=39.41  Aligned_cols=98  Identities=12%  Similarity=0.117  Sum_probs=55.7

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCccccccccc----c-ccccc-------
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFLKPEFV----P-QQAYR-------   64 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~~~~~~----~-~~~~~-------   64 (119)
                      ++++ |+++++|-+|+ +|..       ..+++ ..|+++++  |.+|   .|.+++++.+.    + ..+..       
T Consensus       160 i~~~-~~~~~vD~~q~-~g~~-------~id~~-~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~  229 (361)
T 3m5u_A          160 YPKT-KTPLIVDASSD-FFSR-------KVDFS-NIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHA  229 (361)
T ss_dssp             CCCC-SSCEEEECGGG-TTSS-------CCCCT-TEEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHH
T ss_pred             cccc-CCEEEEEcccc-cCCC-------CCCcc-cCCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHh
Confidence            4554 99999999976 4322       12232 26777554  7775   22233333221    1 01111       


Q ss_pred             -eeecc-CCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          65 -VFNTW-MGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        65 -~~~T~-~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                       ...++ ..|-....+..++|+++.+.    +..++.+++.+++++.|+++
T Consensus       230 ~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~  280 (361)
T 3m5u_A          230 ENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS  280 (361)
T ss_dssp             HTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC
Confidence             01222 24555667778899998765    35567788888888888765

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=94.22  E-value=0.33  Score=36.47  Aligned_cols=101  Identities=7%  Similarity=-0.025  Sum_probs=55.6

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc--c-Ccccccccccc----ccccce--------e
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ--L-GGYFLKPEFVP----QQAYRV--------F   66 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg--~-gG~~~~~~~~~----~~~~~~--------~   66 (119)
                      +|+++|+++++|=+|+ +|..  ..-.+.++    .....-=|.+|  + |.+++++.+.+    ..+.+.        .
T Consensus       172 i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~  244 (377)
T 3e77_A          172 IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNS  244 (377)
T ss_dssp             CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTT
T ss_pred             hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcC
Confidence            4788999999999976 4322  11122222    12223346665  2 22233333221    111111        1


Q ss_pred             eccC-CCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          67 NTWM-GDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        67 ~T~~-~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++++ .|-....+..++|+++.++    +..++.+++.+++++.|+++
T Consensus       245 ~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~  292 (377)
T 3e77_A          245 SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNS  292 (377)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            2322 3445666677889988764    35567788888888888875

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=89.96  E-value=0.8  Score=34.41  Aligned_cols=97  Identities=8%  Similarity=-0.066  Sum_probs=51.1

Q ss_pred             hCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc---cCcccccccccc----ccccc--------eeecc-
Q psy4800           6 HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ---LGGYFLKPEFVP----QQAYR--------VFNTW-   69 (119)
Q Consensus         6 ~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg---~gG~~~~~~~~~----~~~~~--------~~~T~-   69 (119)
                      +|+++++|=+|+ +|..  ..-.+.++    .++..-=|.+|   .|.+++++.+.+    ..+.+        ...++ 
T Consensus       191 ~g~~~~vDa~qs-~g~~--pidv~~~~----~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~g  263 (386)
T 3qm2_A          191 PEVVVTADFSST-ILSA--PLDVSRYG----VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFN  263 (386)
T ss_dssp             TTCCEEEECTTT-TTSS--CCCGGGCS----EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-----
T ss_pred             CCCEEEEEcccc-cCCC--CCCccccC----EEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCC
Confidence            689999999975 4322  11122222    23334447765   223333433221    11111        01111 


Q ss_pred             CCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..|..+..+..++++++.+.    +..++.+++.+++++.|+++
T Consensus       264 Tp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~  307 (386)
T 3qm2_A          264 TPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS  307 (386)
T ss_dssp             --CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence            23334566677888888654    35567788888888888775

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=89.03  E-value=0.65  Score=36.37  Aligned_cols=104  Identities=16%  Similarity=0.146  Sum_probs=57.2

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccccc-c---------------cc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE-F---------------VP   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~-~---------------~~   59 (119)
                      ++|++.|++|++|=+|. |+=-.| .+- ..+   ...|++  |.=|.|.  -||++.... .               ..
T Consensus       225 eIAd~vGA~Lm~DmAHiaGLVA~g-~~p-sP~---~~ADvVTtTTHKTLrGPrGG~Il~~~~~~~~~~k~~~~~~~~~~k  299 (490)
T 3ou5_A          225 EVCDEVKAHLLADMAHISGLVAAK-VIP-SPF---KHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFED  299 (490)
T ss_dssp             HHHHHHTCEEEEECGGGHHHHHTT-SSC-CGG---GTCSEEEEESSSTTCSCSCEEEEEECSEEEECC--CCEEECCCHH
T ss_pred             HHHhhcccEEEechhhhhhhhccc-ccC-Ccc---ccceEEeccccccccCCCceEEEeccccccccccccchhHHHHHH
Confidence            47999999999999995 651112 111 111   127998  5679996  478877422 1               00


Q ss_pred             cccccee-eccCCCHHHHHHHHHH-HHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          60 QQAYRVF-NTWMGDPGKVLLLKGI-IDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ~~~~~~~-~T~~~~p~~~a~a~a~-l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .-....| .+.+|+....-+++++ +....++   +..+++-++.+.|.+.|.+.
T Consensus       300 kin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~  354 (490)
T 3ou5_A          300 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             HHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            0001112 2223333333333332 3332233   45567888888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	2e-11
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	2e-10
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	6e-08
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	1e-07

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 6   HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL------KPEFVP 59
           +    + DEVQTG G  GK  C  H++++  PD++   K +  G Y +          + 
Sbjct: 219 YNVLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKALSGGHYPISAVLANDDIMLV 276

Query: 60  QQAYRVFNTWMGDP 73
            +     +T+ G+P
Sbjct: 277 IKPGEHGSTYGGNP 290

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVP---- 59
             H    + DE+QTG    G++   ++ ++   PDIV   K +  G Y +          
Sbjct: 219 TRHQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKALSGGLYPVSAVLCDDDIM 276

Query: 60  --QQAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQ 96
              +    F+T+ G+P    +    ++ +  ENL +   
Sbjct: 277 LTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENAD 315

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 47.0 bits (111), Expect = 6e-08
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFVPQQAY 63
           +  G+ L++DE+QTG G  GK +  EHF +   PDI+T +K +  GG  L    + ++  
Sbjct: 208 QEKGALLILDEIQTGMGRTGKRFAFEHFGIV--PDILTLAKALG-GGVPLGVAVMREEVA 264

Query: 64  RV------FNTWMGDP 73
           R         T+ G+P
Sbjct: 265 RSMPKGGHGTTFGGNP 280

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 4   KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ----LGGYFLKPEFVP 59
             HG  L+ DEVQ+G G  G  +  E   +   PD+ TF+K +     L G   + E + 
Sbjct: 229 DEHGIMLIADEVQSGAGRTGTLFAMEQMGVA--PDLTTFAKSIAGGFPLAGVTGRAEVMD 286

Query: 60  Q-QAYRVFNTWMGDP 73
                 +  T+ G+P
Sbjct: 287 AVAPGGLGGTYAGNP 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.98
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.98
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.97
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.97
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.97
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.97
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.97
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.97
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.65
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.62
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.52
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	98.36
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	98.3
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.29
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	97.99
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	97.88
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	97.82
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	97.77
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	97.69
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.62
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	97.39
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	97.37
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	97.35
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	97.28
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	97.28
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	97.25
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	97.21
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	97.1
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	97.04
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	97.02
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	96.98
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	96.85
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	96.8
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	96.64
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	96.56
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	96.48
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	96.36
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	96.35
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	96.24
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	96.16
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	96.06
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	96.03
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	95.93
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	95.88
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	95.8
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	95.73
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	95.69
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	95.45
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	95.42
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	95.4
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	95.31
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	95.2
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	94.98
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	94.73
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	94.65
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	94.63
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	94.51
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	94.45
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	94.02
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	93.87
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	93.12
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	92.34
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	92.34
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	91.85
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	91.76
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	91.35
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	91.02
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	90.01
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	89.38
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	89.27
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	89.23
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	88.39
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	87.51
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	85.63
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	85.52
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	85.15
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	83.29
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	82.31
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	81.02

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.98  E-value=4.5e-33  Score=214.92  Aligned_cols=116  Identities=47%  Similarity=0.857  Sum_probs=104.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-cccccccccceeeccCCCHHHHHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-PEFVPQQAYRVFNTWMGDPGKVLLL   79 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-~~~~~~~~~~~~~T~~~~p~~~a~a   79 (119)
                      ++|++||++||+|||||||||||++|++|++|++..|||+|+||+| +||+++. ..+....+..+++||++||++|+++
T Consensus       276 ~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l-~~g~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa  354 (461)
T d1ohwa_         276 DISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKM-MTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLL  354 (461)
T ss_dssp             HHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGG-SSEEEEECGGGSCSSTTSSCCSCSSCHHHHHHH
T ss_pred             HHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcc-cccccccccccccccccccccccccccccchhh
Confidence            4899999999999999999999999999999997679999999999 4555554 4455555677899999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          80 KGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        80 ~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +++|++++++++.+++++++++|+++|+++.+++|.++
T Consensus       355 ~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i  392 (461)
T d1ohwa_         355 AEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI  392 (461)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence            99999999999999999999999999999999998765

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=8.9e-33  Score=211.06  Aligned_cols=114  Identities=25%  Similarity=0.420  Sum_probs=102.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----ccc-ccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FVP-QQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~~-~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|.+|+++++|+.  |||+|+||+| +||+|++..     +.+ ..+..+++||++||+
T Consensus       226 ~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~--PDi~~~gK~l-~gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl  302 (425)
T d1sffa_         226 ALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA--PDLTTFAKSI-AGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPI  302 (425)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSC--CSEEEECGGG-GTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHH
T ss_pred             HHHHHcCceEEeccccccCCCcchhhHHHhcCCC--ccceeccccc-CCCcceEEEEEcHHHHHhhCCCCCCCCCCcCHH
Confidence            4899999999999999999999999999999998  9999999999 678876533     332 345678899999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      +|++++++|++++++++.++++++++++++.|+++.+++|.+.
T Consensus       303 ~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~  345 (425)
T d1sffa_         303 ACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIG  345 (425)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceE
Confidence            9999999999999999999999999999999999999999753

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.97  E-value=4.3e-32  Score=206.24  Aligned_cols=113  Identities=24%  Similarity=0.366  Sum_probs=100.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccc-cc-----cccc-ccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-KP-----EFVP-QQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~-~~-----~~~~-~~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+|||||||||+|.+|+++++|+.  |||+|+||+| +||+++ +.     ++.+ ..+..+++||++||
T Consensus       214 ~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~--PDivt~gK~l-~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnp  290 (404)
T d1z7da1         214 DICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVK--PDVILLGKAL-SGGHYPISAVLANDDIMLVIKPGEHGSTYGGNP  290 (404)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGG-GTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCH
T ss_pred             HHHHHcCCEEEEEcCccCCCcccccccccccCCC--CCEEEEcccc-cCCCCCcccccchHHHHccCCCCCcCcCCCCCc
Confidence            4899999999999999999999999999999998  9999999999 566544 32     2222 34567899999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      ++|++++++|++++++++.+++.+++++++++|+++.+++|.|
T Consensus       291 l~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v  333 (404)
T d1z7da1         291 LAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIV  333 (404)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred             chhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCe
Confidence            9999999999999999999999999999999999999889875

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-32  Score=206.06  Aligned_cols=108  Identities=25%  Similarity=0.355  Sum_probs=96.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----ccc-ccccceeeccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FVP-QQAYRVFNTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~~-~~~~~~~~T~~~~p   73 (119)
                      ++|++||++||+|||||||||+|++|+++++|+.  |||+||||+| +||+ |.+..     +.+ ..+..+++||++||
T Consensus       216 ~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~--PDi~~~gK~l-~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnp  292 (404)
T d2byla1         216 ELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR--PDIVLLGKAL-SGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNP  292 (404)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGG-GTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCH
T ss_pred             HHHHhcCeEEEeeccccccccccccchhhhcCCC--CCEEEECchh-hCCCccceeeeechhhhhccCCCCCCcCCCcCH
Confidence            4899999999999999999999999999999998  9999999999 5775 44322     222 34667899999999


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhh
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQ  111 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~  111 (119)
                      ++|++++++|++|+++++.+++++++++++++|+++..
T Consensus       293 l~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~  330 (404)
T d2byla1         293 LGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS  330 (404)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999854

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=8e-32  Score=204.01  Aligned_cols=108  Identities=26%  Similarity=0.353  Sum_probs=97.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcccccccc------ccccccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEF------VPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~------~~~~~~~~~~T~~~~p~   74 (119)
                      ++|++||++||+|||||||||+|.+|+++++|++  |||+|+||+| +||+++...+      ....+..|++||++||+
T Consensus       205 ~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~--PDi~~~gK~l-~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPl  281 (387)
T d1vefa1         205 EITQEKGALLILDEIQTGMGRTGKRFAFEHFGIV--PDILTLAKAL-GGGVPLGVAVMREEVARSMPKGGHGTTFGGNPL  281 (387)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC--CSEEEECGGG-GTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHH
T ss_pred             HHHHHcCceEEecccccccCccCCCcccccCCcC--CceeeecccC-CCCccccccccceeeeeccccCCccccCCCCcc
Confidence            4899999999999999999999999999999998  9999999999 6888876432      22346678999999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhh
Q psy4800          75 KVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQ  111 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~  111 (119)
                      +|++++++|++++++++.+++++++++|+++|+++..
T Consensus       282 a~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~  318 (387)
T d1vefa1         282 AMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS  318 (387)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC
T ss_pred             hhhhcccchhhcccccccchHhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999998853

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.97  E-value=1.2e-31  Score=204.96  Aligned_cols=114  Identities=25%  Similarity=0.351  Sum_probs=102.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccccc-----c---ccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPEFV-----P---QQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~~~-----~---~~~~~~~~T~~~~   72 (119)
                      ++|++||++||+|||||||||+|.+|+++++|++  |||+|+||+| +||++++..+.     .   .....+++||++|
T Consensus       229 ~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~--PDi~~~gK~l-~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~  305 (431)
T d1zoda1         229 RKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT--PDILTLSKTL-GAGLPLAAIVTSAAIEERAHELGYLFYTTHVSD  305 (431)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC--CSEEEECHHH-HTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTC
T ss_pred             HHHHhcCceEEeccccccccccccccccccCCCC--cchhcccccc-ccccccceeeeeecchhhhhcccccccCCCCCC
Confidence            4899999999999999999999999999999998  9999999999 78888765422     1   2234578999999


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      |++|+++.++|++++++++.++++++++++++.++++.+++|.|.
T Consensus       306 pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~  350 (431)
T d1zoda1         306 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIG  350 (431)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred             cchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeE
Confidence            999999999999999999999999999999999999999998753

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.7e-31  Score=203.41  Aligned_cols=112  Identities=21%  Similarity=0.311  Sum_probs=96.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc-ccccc-----cc----c--ccccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY-FLKPE-----FV----P--QQAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~-~~~~~-----~~----~--~~~~~~~~T   68 (119)
                      ++|++||++||+|||||||||+|++|+++++++.  |||+|+||+| +||+ +.+..     +.    +  .....|++|
T Consensus       233 ~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~--PDi~~~gK~l-~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T  309 (429)
T d1s0aa_         233 KICDREGILLIADEIATGFGRTGKLFACEHAEIA--PDILCLGKAL-TGGTMTLSATLTTREVAETISNGEAGCFMHGPT  309 (429)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC--CSEEEECGGG-GTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCT
T ss_pred             HHHHHcCcceehhhccccccccccccccccceec--cccccccccc-ccccccccchhhHHHHHhccCCCCCcceeecCC
Confidence            4899999999999999999999999999999998  9999999999 5664 44322     21    1  123457899


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQ  116 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i  116 (119)
                      |++||++|++++++|++++++++.++++++|++|+++|+++.+ +|.|
T Consensus       310 ~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v  356 (429)
T d1s0aa_         310 FMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMV  356 (429)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CTTE
T ss_pred             CCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHhcc-CCce
Confidence            9999999999999999999999999999999999999999864 6654

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.97  E-value=5.7e-31  Score=201.30  Aligned_cols=113  Identities=20%  Similarity=0.226  Sum_probs=100.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccccc-----cc----cccccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLKPE-----FV----PQQAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~~~-----~~----~~~~~~~~~T~~~   71 (119)
                      ++|++||++||+||||||| |+|++|+++++|+.  |||+|+||++ +||++++..     +.    +.....+++||++
T Consensus       227 ~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~--PDi~~~gK~l-ggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~g  302 (427)
T d2gsaa_         227 EITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVT--PDLTTLGKII-GGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSG  302 (427)
T ss_dssp             HHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCC--CSEEEECGGG-GTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHhceeeeeccccccc-eecccchHHhcCCC--HHHHhhhhcc-CCCcceeeeeehHHHHHHhcccCCCcCCCCCCC
Confidence            4899999999999999999 88999999999998  9999999999 688887533     22    2234678899999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy4800          72 DPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQESNLQP  117 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~p~i~  117 (119)
                      ||++|++++++|++++++++.+++++++++|++.|+++.+++|...
T Consensus       303 npla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~  348 (427)
T d2gsaa_         303 NPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAA  348 (427)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence            9999999999999999999999999999999999999999888644

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.65  E-value=8.9e-17  Score=121.42  Aligned_cols=107  Identities=25%  Similarity=0.251  Sum_probs=85.6

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCccccccc-----cccccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~~   70 (119)
                      +||++||++|++||+|. | +|..|++ ..+++++....||+  ||||++| .|||+..+.     +.+..+++++|| +
T Consensus       201 ~L~~~y~~~L~vDeAHs~Gv~G~~G~G-~~~~~~~~~~~di~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifSt-a  278 (396)
T d2bwna1         201 DIAEEFGALTYIDEVHAVGMYGPRGAG-VAERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFST-S  278 (396)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSTTSCC-HHHHHTCGGGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSB-C
T ss_pred             HHhhhhcceeeeccceeeeeecccccc-chhhcCCceeeeeeeecccccccccccccchhHHHHHHHHhhcchhhhcc-c
Confidence            48999999999999974 3 4555555 56778887667887  9999999 789887543     444567788888 8


Q ss_pred             CCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..++++++++++++++   +++.+++.+.+++++.|+++
T Consensus       279 lpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~  320 (396)
T d2bwna1         279 LPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  320 (396)
T ss_dssp             CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998753   34567889999999999886

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.4e-16  Score=117.98  Aligned_cols=108  Identities=19%  Similarity=0.254  Sum_probs=84.7

Q ss_pred             ChhhhhCCEEEEccccccccCCCc--chhhhhcCCCCCCCEE--EEchhhc--cCccccccc-cc----cccccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGK--FWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE-FV----PQQAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~--~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~-~~----~~~~~~~~~T~   69 (119)
                      +||++||++||+||+|+ +|+.|.  .+..+++++...+|++  ||+|++|  .||++..+. +.    +..+.++++| 
T Consensus       201 ~L~~~~~a~LivDeah~-~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~-  278 (401)
T d1fc4a_         201 DLADKYDALVMVDDSHA-VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSN-  278 (401)
T ss_dssp             HHHHHTTEEEEEECTTT-TTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSC-
T ss_pred             HHHhhcCcEEEehhhhc-cccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHHHcCChhhhhcC-
Confidence            48999999999999986 344544  3467888887678887  8999995  377776543 32    3445666777 


Q ss_pred             CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      +.+|..++++.++++.+.+ ++++++++++.++|++.+.+..
T Consensus       279 ~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g  320 (401)
T d1fc4a_         279 SLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG  320 (401)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccC
Confidence            8889999999999998875 5788999999999999998863

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.2e-15  Score=109.64  Aligned_cols=105  Identities=16%  Similarity=0.221  Sum_probs=80.3

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc-cCccccccc-----cccccccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-LGGYFLKPE-----FVPQQAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-~gG~~~~~~-----~~~~~~~~~~~T~~   70 (119)
                      ++|++||++||+||+|+ | +|..|.+ ..+++++.  +|++  ++||++| .||++....     +.+..+.+.++| +
T Consensus       191 ~l~~~~~~~livDeah~~gv~G~~g~G-~~~~~~~~--~~~~~~t~~ka~g~~Gg~v~~~~~~~~~l~~~~~~~~~s~-~  266 (383)
T d1bs0a_         191 QVTQQHNGWLMVDDAHGTGVIGEQGRG-SCWLQKVK--PELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYST-S  266 (383)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSGGGCC-HHHHTTCC--CSEEEEESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSB-C
T ss_pred             HHHHhcCcEEEeecceeeeecCCcccc-hHHHcCCc--cccccccccccccccccccccchhHHHHHHhhchhhhhcc-c
Confidence            48999999999999975 2 3444443 56888987  7665  7999998 677776432     334456667777 8


Q ss_pred             CCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+|..+++++++++++++.   ..+.+++++.+++++.|+++
T Consensus       267 ~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  308 (383)
T d1bs0a_         267 MPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  308 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999999999998753   46677889999999999875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=98.36  E-value=1.8e-07  Score=69.97  Aligned_cols=110  Identities=17%  Similarity=0.116  Sum_probs=61.3

Q ss_pred             ChhhhhCCEEEEccccc------cccCCCcchhhhhcCCC----CCCCEEEEchhhc----cCcccccc-c--ccc----
Q psy4800           1 MYEKYHGSALLIDEVQT------GGGPCGKFWCHEHFDLE----ESPDIVTFSKKMQ----LGGYFLKP-E--FVP----   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t------G~Gr~G~~~~~~~~g~~----~~pDi~t~gK~lg----~gG~~~~~-~--~~~----   59 (119)
                      ++|++||++||+||+|+      +.+|++.++..+..++.    ...|+++++|.-+    .+|++... .  +..    
T Consensus       210 ~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~  289 (465)
T d1ax4a_         210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQ  289 (465)
T ss_dssp             HHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHH
T ss_pred             HHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhc
Confidence            48999999999999986      23444443333222211    1258888887763    22333321 1  111    


Q ss_pred             -ccccceeeccCCCHHHHHHHHHH-HHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          60 -QQAYRVFNTWMGDPGKVLLLKGI-IDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        60 -~~~~~~~~T~~~~p~~~a~a~a~-l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                       ......+.++++.+..+.++.+. +.....++..++..++.++|.+.|++..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g  342 (465)
T d1ax4a_         290 RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG  342 (465)
T ss_dssp             HHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence             11223344545544433333333 3333345677777788899999999863

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.30  E-value=5.9e-07  Score=66.49  Aligned_cols=110  Identities=12%  Similarity=0.024  Sum_probs=58.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cC-cccc-ccc-ccc-ccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LG-GYFL-KPE-FVP-QQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~g-G~~~-~~~-~~~-~~~~~~~~T~~~~   72 (119)
                      ++|++||++|++|+++.+.-..............  .|+++++  |.++  .| |++. .+. +.. ..+...+++...+
T Consensus       235 ~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~--~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (434)
T d2z67a1         235 KICENYDIPHIINGAYAIQNNYYLEKLKKAFKYR--VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATP  312 (434)
T ss_dssp             HHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSC--CSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHH
T ss_pred             HHHHHhCCeEEEeccchhhhhhccccccccccCC--cceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccch
Confidence            4899999999999997532111011111112223  7888666  9885  12 2332 221 222 2233334443333


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhhhc
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLGQE  112 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~~~  112 (119)
                      ...+.+++..+..-.-.+..++..++.++++++|+++...
T Consensus       313 ~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~  352 (434)
T d2z67a1         313 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK  352 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhh
Confidence            3333333333332222456677888899999999987543

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=5.3e-07  Score=67.55  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             ChhhhhCCEEEEccccc-c--ccCCCcchhhhhcCC-------CCCCCEEEEch--hhc--cCcccccc-c-ccc-----
Q psy4800           1 MYEKYHGSALLIDEVQT-G--GGPCGKFWCHEHFDL-------EESPDIVTFSK--KMQ--LGGYFLKP-E-FVP-----   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G--~Gr~G~~~~~~~~g~-------~~~pDi~t~gK--~lg--~gG~~~~~-~-~~~-----   59 (119)
                      ++|++||++||+||+|. |  .++.+..+.+...++       -..+|++++++  .++  .||++... . +..     
T Consensus       211 ~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~  290 (467)
T d2v1pa1         211 SIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTEC  290 (467)
T ss_dssp             HHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHH
T ss_pred             HHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhh
Confidence            48999999999999985 2  222222222222221       01279987765  443  34555432 1 111     


Q ss_pred             --c-cccceeeccCCCHHHHH-HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          60 --Q-QAYRVFNTWMGDPGKVL-LLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        60 --~-~~~~~~~T~~~~p~~~a-~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                        . ....++.++.+.+...+ +....++....+++.++..+++++|.++|++..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (467)
T d2v1pa1         291 RTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG  345 (467)
T ss_dssp             HHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence              0 11123345455554444 444445555566788888999999999998853

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=97.99  E-value=2.6e-06  Score=61.26  Aligned_cols=109  Identities=14%  Similarity=0.054  Sum_probs=59.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---cccccc-ccccccccceeeccCCCHHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLKP-EFVPQQAYRVFNTWMGDPGK   75 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~~-~~~~~~~~~~~~T~~~~p~~   75 (119)
                      ++|++|++++|.||++..|...+..........+...-+-+|||++| .|   |++..+ ......-..+..++..+.++
T Consensus       171 ~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~  250 (355)
T d1lc5a_         171 DRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALA  250 (355)
T ss_dssp             HHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHH
T ss_pred             hhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhcCCccccccc
Confidence            37899999999999987664444322211111110022338999986 34   665532 22111111122345667777


Q ss_pred             HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          76 VLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        76 ~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++.++|+--.. .+.++++++.-+++.+.|+++
T Consensus       251 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  285 (355)
T d1lc5a_         251 ALAGEVALQDSAWQQATWHWLREEGARFYQALCQL  285 (355)
T ss_dssp             HHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence            7777776653211 123445566666777777664

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=97.88  E-value=3.5e-06  Score=58.46  Aligned_cols=46  Identities=11%  Similarity=0.057  Sum_probs=31.4

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ   47 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg   47 (119)
                      +|++||+++++||+|++.++.+.............++.++++|..+
T Consensus       163 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (345)
T d1v72a1         163 VCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN  208 (345)
T ss_dssp             HHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG
T ss_pred             HHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccc
Confidence            7999999999999998765554443333333332366778888863

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=97.82  E-value=1.5e-05  Score=59.17  Aligned_cols=110  Identities=11%  Similarity=-0.048  Sum_probs=64.6

Q ss_pred             ChhhhhCCEEEEcccccc-ccCCCcc-hhhhh----cCCCCCCCEE--EEchhhc--cCccccc--ccccc---------
Q psy4800           1 MYEKYHGSALLIDEVQTG-GGPCGKF-WCHEH----FDLEESPDIV--TFSKKMQ--LGGYFLK--PEFVP---------   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG-~Gr~G~~-~~~~~----~g~~~~pDi~--t~gK~lg--~gG~~~~--~~~~~---------   59 (119)
                      ++|++||++|++||+|.. +.-.+.. .....    .+.+...|++  ++.|.+|  ++|.++.  +....         
T Consensus       197 ~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~  276 (462)
T d1c4ka2         197 KRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHK  276 (462)
T ss_dssp             HHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHH
T ss_pred             HHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHH
Confidence            479999999999999853 3222211 11111    2223335877  6789997  3444431  11110         


Q ss_pred             --ccccceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhh
Q psy4800          60 --QQAYRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        60 --~~~~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l~  110 (119)
                        ......+.|.+++...++...++..+++.+   ++.++..++.++++++++++.
T Consensus       277 ~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~  332 (462)
T d1c4ka2         277 HFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG  332 (462)
T ss_dssp             HHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              011122234367777777777777777543   456777888899999998864

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.77  E-value=1.5e-06  Score=63.42  Aligned_cols=81  Identities=14%  Similarity=0.082  Sum_probs=45.4

Q ss_pred             ChhhhhCCEEEEccccc-c-ccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-ccccccccce-eeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQT-G-GGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVPQQAYRV-FNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G-~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~~~~~~~-~~T~~~~   72 (119)
                      ++|++||+++|+||++. + ++..+..- ...++    .|++  +++|+++  .+|++..+ .+.+...... ..++..+
T Consensus       158 ~ia~~~~~~~i~De~y~~~~~~~~~~~~-~~~~~----~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~  232 (366)
T d2aeua1         158 NTAKNKEAIVFVDDASGARVRLLFNQPP-ALKLG----ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQ  232 (366)
T ss_dssp             HHHHHHTCCEEEECTTHHHHHHHTTCCC-HHHHT----CSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCC
T ss_pred             HHhccCcEEEEEecCccccccccccCCC-HhhcC----ceEEEecccccccccceeEEEecHHHHHHHHHHHhcccccCC
Confidence            47999999999999974 2 22222211 11234    5776  6667774  34666643 3332211111 1233456


Q ss_pred             HHHHHHHHHHHHHH
Q psy4800          73 PGKVLLLKGIIDTI   86 (119)
Q Consensus        73 p~~~a~a~a~l~~i   86 (119)
                      |..+.++.++|+.+
T Consensus       233 ~~~~~a~~~aL~tl  246 (366)
T d2aeua1         233 PPLLAGIYRALKNF  246 (366)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777777777654

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.69  E-value=9.4e-05  Score=52.37  Aligned_cols=40  Identities=18%  Similarity=0.078  Sum_probs=28.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg   47 (119)
                      ++|++||+++|+||+|+ +|..+..  ....+    +|+++++  |.++
T Consensus       164 ~ia~~~~i~livD~a~~-~g~~~~~--~~~~g----~D~~~~S~~K~~~  205 (364)
T d2e7ja1         164 KVCSEYDVPLLVNGAYA-IGRMPVS--LKEIG----ADFIVGSGHKSMA  205 (364)
T ss_dssp             HHHHTTTCCEEEECTTT-BTTBCCC--HHHHT----CSEEEEEHHHHSS
T ss_pred             eccccccchhhccccch-hhhhhhc--ccccc----cceeeeccccccC
Confidence            47999999999999974 5444322  12233    6888666  9986

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=1e-05  Score=56.16  Aligned_cols=106  Identities=17%  Similarity=0.084  Sum_probs=50.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCccccc-----ccccc---ccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFLK-----PEFVP---QQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~~-----~~~~~---~~~~~~~~T~~~~   72 (119)
                      ++|++||+++++||+++++......+........  .+..+++|..+.+|....     ..+..   ......+.+  .+
T Consensus       156 ~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  231 (343)
T d1m6sa_         156 TIAKEHGINVHIDGARIFNASIASGVPVKEYAGY--ADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGG--MR  231 (343)
T ss_dssp             HHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHT--CSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCC--CS
T ss_pred             HHHHhcCeEEEeccccccccccccccchhhhccc--cccccccccccccccccccccccHHHHhhhHhhCcccccc--cc
Confidence            3689999999999999865333333222222222  556666665543333222     11111   111112222  22


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhh
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGLG  110 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l~  110 (119)
                      +....++.................++..++.+.+.++.
T Consensus       232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T d1m6sa_         232 QAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIG  269 (343)
T ss_dssp             STHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhc
Confidence            22222222223333333445556666667777776653

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=0.00015  Score=51.94  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=54.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhccCcc----ccc-cccccc-cccceeeccCCCHH
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQLGGY----FLK-PEFVPQ-QAYRVFNTWMGDPG   74 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~----~~~-~~~~~~-~~~~~~~T~~~~p~   74 (119)
                      ++|++||+++|.||++..+-.............+....+.++||..+..|+    ... ..+... .......+...+++
T Consensus       179 ~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (368)
T d1v2da_         179 RLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTP  258 (368)
T ss_dssp             HHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHH
T ss_pred             HHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhhhccccccccc
Confidence            379999999999999753322222211111111111234588887753333    222 222221 11122234455666


Q ss_pred             HHHHHHHHHHHHhhhcHH----HHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHNENLL----DRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~~~~~----~~~~~~g~~l~~~L~~l  109 (119)
                      ...++.+++......++.    +.++++-+++.+.|++.
T Consensus       259 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  297 (368)
T d1v2da_         259 LQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM  297 (368)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc
Confidence            655555666554433333    33555556666776654

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=0.00014  Score=52.52  Aligned_cols=54  Identities=19%  Similarity=0.130  Sum_probs=31.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc-cC---ccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ-LG---GYFLK   54 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg-~g---G~~~~   54 (119)
                      ++|++||+++|.||++..+-.-|.........-+...-+.++||.++ .|   |+++.
T Consensus       191 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~  248 (382)
T d1b5pa_         191 RLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACG  248 (382)
T ss_dssp             HHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             HHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEE
Confidence            47999999999999988653334432211111110011237999986 33   55544

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=97.35  E-value=0.00011  Score=53.29  Aligned_cols=47  Identities=19%  Similarity=0.051  Sum_probs=27.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhc-CCCCCCCEEEEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHF-DLEESPDIVTFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~-g~~~~pDi~t~gK~lg   47 (119)
                      ++|++|++++|.||++..+...|... ..... +.....-+-+++|.++
T Consensus       198 ~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  246 (403)
T d1wsta1         198 ELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA  246 (403)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC
T ss_pred             HHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec
Confidence            37999999999999987653333321 11111 1110122348999884

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.00011  Score=53.88  Aligned_cols=106  Identities=11%  Similarity=0.003  Sum_probs=54.8

Q ss_pred             ChhhhhCCEEEEccccccccCCC--c--chhhhhcCCCCCCCEEEE--chhhc---cCccccc-cc-cccc-cccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG--K--FWCHEHFDLEESPDIVTF--SKKMQ---LGGYFLK-PE-FVPQ-QAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G--~--~~~~~~~g~~~~pDi~t~--gK~lg---~gG~~~~-~~-~~~~-~~~~~~~T   68 (119)
                      ++|++||+++++|+++.+. -.+  +  .+... .+   .+|++++  .|.++   ++|++.. +. +... .....++.
T Consensus       218 ~~~~~~~~~l~vD~a~~~~-~~~~~~~~~~~~~-~~---~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~  292 (445)
T d3bc8a1         218 VICANYDIPHVVNNAYGLQ-SSKCMHLIQQGAR-VG---RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRA  292 (445)
T ss_dssp             HHHHHHTCCEEEECTTTTT-CHHHHHHHHHHHH-HS---CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCB
T ss_pred             HHHHHhCCcEEEEccchhh-hhhccccchhccC-cC---CcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcc
Confidence            4899999999999997532 111  1  11222 22   2687754  48774   2333332 21 2211 11122222


Q ss_pred             cCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          69 WMGDPGKVLLLKGIIDTIHN---ENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~---~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                       .+.|  .....+.+..+..   .+..++..++.++++++|+++...++
T Consensus       293 -~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~  338 (445)
T d3bc8a1         293 -SASP--SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHN  338 (445)
T ss_dssp             -CSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -cCcc--hHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence             2222  2233344444433   34555677788899999988765443

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.28  E-value=0.00025  Score=50.95  Aligned_cols=45  Identities=20%  Similarity=0.014  Sum_probs=26.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCCCCCCC--E--EEEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLEESPD--I--VTFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pD--i--~t~gK~lg   47 (119)
                      ++|++|++++|.||++..+-..+... ....+.-.  +|  |  -+|||.++
T Consensus       186 ~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~  235 (388)
T d1gdea_         186 DFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGM--FERTITVNGFSKTFA  235 (388)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTC--GGGEEEEEESTTTTT
T ss_pred             HHHHHcCCEEEEEcCChhhhhccCCCCChhhccCC--CCeEEEEeCChhhcc
Confidence            47999999999999986552222211 11111111  33  2  28999986

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00017  Score=51.89  Aligned_cols=107  Identities=15%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhccC----ccccc-cc-cccccccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQLG----GYFLK-PE-FVPQQAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~g----G~~~~-~~-~~~~~~~~~~~T~~~~   72 (119)
                      ++|++|++++|.||++..+..-+.........-+  ..++  .++|.++..    |++.. .. +.........+..+.+
T Consensus       186 ~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~--~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~  263 (389)
T d2gb3a1         186 EIAERHGLFLIVDEVYSEIVFRGEFASALSIESD--KVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPP  263 (389)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCT--TEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCC
T ss_pred             hhcccCCEEEEEeccccccccccccccccccccc--cccccccccccccCcccceeeeeccchhHHHHHhhhhhcccccc
Confidence            4799999999999998766444433222212111  2233  677988633    33332 22 2221111222333556


Q ss_pred             HHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++...++.+.++..++  ++.+++.+++-+++.+.|+++
T Consensus       264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  302 (389)
T d2gb3a1         264 LLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH  302 (389)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccchhcccccccccccchhhhhhhhhh
Confidence            6666665555432221  123444555556666666654

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=97.21  E-value=5.4e-05  Score=55.05  Aligned_cols=108  Identities=13%  Similarity=0.010  Sum_probs=51.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCC-----CCCCEEEEchhhc-cC---cccccc-ccccc-cccceeecc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLE-----ESPDIVTFSKKMQ-LG---GYFLKP-EFVPQ-QAYRVFNTW   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~-----~~pDi~t~gK~lg-~g---G~~~~~-~~~~~-~~~~~~~T~   69 (119)
                      ++|++||+++|.||++..+...+.....- ....     ...-+-+|||.++ .|   |++..+ .+... .......+.
T Consensus       190 ~~~~~~~~~iI~De~Y~~~~~~~~~~~s~-~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~  268 (388)
T d1j32a_         190 QVAVEAGLWVLSDEIYEKILYDDAQHLSI-GAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTS  268 (388)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTC
T ss_pred             cccccCCeEEEchhhhhcccccCCCCCCH-HHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhccc
Confidence            37999999999999986442222211100 0011     0012338999986 34   555433 22221 111112233


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..++.+..++...++..++  ++.++.++++-+++.+.|++.
T Consensus       269 ~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (388)
T d1j32a_         269 NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM  310 (388)
T ss_dssp             SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4455555544444432211  123344555555666666543

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=97.10  E-value=0.00043  Score=51.67  Aligned_cols=106  Identities=13%  Similarity=0.104  Sum_probs=57.0

Q ss_pred             ChhhhhCCEEEEccccccccCC----------Cc-ch--hhhhcCCCCCCCEE--EEchhhc--cCcccccc--cccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPC----------GK-FW--CHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP--EFVPQQ   61 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~----------G~-~~--~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~--~~~~~~   61 (119)
                      ++|++||+.|++|+++..-...          +. .+  ..+.++.   .|++  ++.|.++  .||++...  .+....
T Consensus       202 ~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~---ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~  278 (456)
T d1c7ga_         202 EMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSY---ADGCTMSGKKDCLVNIGGFLCMNDEEMFSAA  278 (456)
T ss_dssp             HHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTT---CSEEEEETTTTTCCSSCEEEEESCHHHHHHH
T ss_pred             HHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccc---cccEEEeccccccccceeEEEcCCHHHHHHH
Confidence            4899999999999997510000          00 00  1111222   6877  5677775  46776642  222211


Q ss_pred             -----ccceeeccCCC-HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          62 -----AYRVFNTWMGD-PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        62 -----~~~~~~T~~~~-p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                           ....+.++++. ...+.+....+....+++..++..++.++|.++|++.
T Consensus       279 r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         279 KELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             HHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence                 11123344433 3333333334444444556666667778999999876

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=97.04  E-value=0.0012  Score=47.94  Aligned_cols=99  Identities=16%  Similarity=0.106  Sum_probs=56.2

Q ss_pred             hhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc--cCcc-ccccccccccc--------------
Q psy4800           2 YEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ--LGGY-FLKPEFVPQQA--------------   62 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg--~gG~-~~~~~~~~~~~--------------   62 (119)
                      +|+++|+++++|=+|. +|..-  .-...++    +|+++++  |.+|  +.|+ ++.+.+....+              
T Consensus       188 ~~~~~g~~~ivDa~q~-~g~~~--id~~~~~----~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~  260 (408)
T d1t3ia_         188 LAHQAGAKVLVDACQS-APHYP--LDVQLID----CDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFF  260 (408)
T ss_dssp             HHHHTTCEEEEECTTT-TTTSC--CCHHHHT----CSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECS
T ss_pred             hhhccCceeeecccee-ccccc--ccccccC----CceEEeccccccCCCCccccccchhhhhcCCceecCCcccccccc
Confidence            6999999999999875 43221  1223333    7888655  6654  2233 33322111000              


Q ss_pred             ----------cceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          63 ----------YRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        63 ----------~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                .+-.+|  .|..+.++..++++++.+.   +..++..++.+++.+.+++.
T Consensus       261 ~~~~~~~~~~r~e~Gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~  318 (408)
T d1t3ia_         261 DHFTTGELPHKFEAGT--PAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI  318 (408)
T ss_dssp             SCEEECCTTGGGCCSS--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccccCCchhhhcCCc--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccC
Confidence                      011122  3666677778888888753   45566667777777766654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.02  E-value=0.0023  Score=44.99  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcccc-ccccccc--------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFL-KPEFVPQ--------------   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~-~~~~~~~--------------   60 (119)
                      ++|++||+++++|=+|+ +|..  ..-.+  ...  +|+++++  |.++   +-|++. +++....              
T Consensus       151 ~~~~~~g~~~~vDa~qs-~G~~--~~d~~--~~~--~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~  223 (361)
T d1m32a_         151 ALAHRYGKTYIVDAMSS-FGGI--PMDIA--ALH--IDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYA  223 (361)
T ss_dssp             HHHHHHTCEEEEECTTT-TTTS--CCCTT--TTT--CSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHH
T ss_pred             hhhcccceeeEeecccc-cCcc--ccccc--ccc--cceEEeeecccccCCCCceEEEechhhhhhhccccccccccchh
Confidence            37999999999999986 4322  11112  223  8999887  8883   122222 2211100              


Q ss_pred             -----cccceeeccCCCHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHhh
Q psy4800          61 -----QAYRVFNTWMGDPGKVLLLKGIIDTIHNEN----LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 -----~~~~~~~T~~~~p~~~a~a~a~l~~i~~~~----~~~~~~~~g~~l~~~L~~l  109 (119)
                           ........+..+...+.+...+++.+.++.    ...+.+...+.+++.++..
T Consensus       224 ~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (361)
T d1m32a_         224 QWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL  281 (361)
T ss_dssp             HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc
Confidence                 000011122445566666677777665543    2334555666666666654

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00073  Score=49.25  Aligned_cols=109  Identities=10%  Similarity=0.048  Sum_probs=54.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hh-hhhcCCC-CCCCEEEEchhhccC----ccccc-cccccc-cccceeeccCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WC-HEHFDLE-ESPDIVTFSKKMQLG----GYFLK-PEFVPQ-QAYRVFNTWMG   71 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~-~~~~g~~-~~pDi~t~gK~lg~g----G~~~~-~~~~~~-~~~~~~~T~~~   71 (119)
                      ++|++|++++|.||++..+-..+.. .. ....+.. ...-+.+++|.++..    |+++. ..+... ......++++.
T Consensus       198 ~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~  277 (418)
T d1w7la_         198 SLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHC  277 (418)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhccccccccccc
Confidence            4789999999999998776333321 11 1111111 001233899987523    33333 222221 11122234455


Q ss_pred             CHHHHHHHHHHHHHHh---h--hc----HHHHHHHHHHHHHHHHHhh
Q psy4800          72 DPGKVLLLKGIIDTIH---N--EN----LLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        72 ~p~~~a~a~a~l~~i~---~--~~----~~~~~~~~g~~l~~~L~~l  109 (119)
                      +.++..++.+.+..-.   +  .+    ..++++++-+.+.+.|+++
T Consensus       278 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  324 (418)
T d1w7la_         278 PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV  324 (418)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc
Confidence            6666666655554322   1  12    3344555555666666654

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0023  Score=45.25  Aligned_cols=19  Identities=21%  Similarity=0.279  Sum_probs=16.8

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||++..+
T Consensus       160 ~~~~~~~~~lI~De~y~~~  178 (361)
T d1d2fa_         160 DLCERHGVRVISDEIHMDM  178 (361)
T ss_dssp             HHHHHTTCEEEEECTTTTC
T ss_pred             hhhhhhheeeeeccccccc
Confidence            4799999999999998765

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0046  Score=43.88  Aligned_cols=102  Identities=13%  Similarity=0.021  Sum_probs=57.2

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---cCcccc-ccc----ccc-----------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---LGGYFL-KPE----FVP-----------   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~gG~~~-~~~----~~~-----------   59 (119)
                      ++|++||+++++|.+|+ +|..  ..-.+..+    .|+++++  |.++   +.|++. +..    +..           
T Consensus       168 ~~~~~~g~~~~vD~~qs-~g~~--~~d~~~~~----~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
T d1h0ca_         168 ELCHRYKCLLLVDSVAS-LGGT--PLYMDRQG----IDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD  240 (388)
T ss_dssp             HHHHTTTCEEEEECTTT-TTTS--CCCTTTTT----CSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred             HHhhcccccceeccccc-cccc--cccccccc----cceecccccccccCCCceEEEeecHHHHHhhhhccccccccccc
Confidence            37999999999999975 3322  11122222    6887655  8774   223322 111    000           


Q ss_pred             ---------ccccceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          60 ---------QQAYRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ---------~~~~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                               ........+...+.....+..++++.+.+.   ....+..++.+++++.++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~  302 (388)
T d1h0ca_         241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL  302 (388)
T ss_dssp             HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc
Confidence                     000001112134556677788888888664   34456677788888888765

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=96.64  E-value=0.0019  Score=46.82  Aligned_cols=19  Identities=21%  Similarity=-0.053  Sum_probs=16.4

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||++.-+
T Consensus       198 ~~a~~~~~~iI~De~y~~~  216 (418)
T d2r5ea1         198 NLCKKWNVLCVSDEVYEHM  216 (418)
T ss_dssp             HHHHHHTCEEEEECTTTTC
T ss_pred             hhhhcCCeeeecccchhhh
Confidence            4799999999999998654

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.00093  Score=48.52  Aligned_cols=111  Identities=13%  Similarity=0.064  Sum_probs=52.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcch-hhhhcCCCCCCCE---E-EEchhhccC---ccccc-cccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFW-CHEHFDLEESPDI---V-TFSKKMQLG---GYFLK-PEFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~-~~~~~g~~~~pDi---~-t~gK~lg~g---G~~~~-~~~~~~-~~~~~~~T~~   70 (119)
                      ++|++|++++|.||+...+...+... ......-   |+.   + +++|....|   |++.. ..+.+. .......+..
T Consensus       210 ~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~---~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~~~~~~~  286 (420)
T d1vp4a_         210 EIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG---PERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLC  286 (420)
T ss_dssp             HHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC---TTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSS
T ss_pred             hhhhcccccccccchhhhccccCccccccccccc---ccceeEEeccccccccccccccccccchhhhhhhhhhhhcccc
Confidence            47999999999999987653333211 1111111   332   2 566665211   34333 223221 1111122223


Q ss_pred             CCHHHHHHHHHHHHHHh--h--hcHHHHHHHHHHHHHHHHHhhhhcCC
Q psy4800          71 GDPGKVLLLKGIIDTIH--N--ENLLDRVQKTGDILLNVRLGLGQESN  114 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~--~--~~~~~~~~~~g~~l~~~L~~l~~~~p  114 (119)
                      .+....+++...++.-.  +  .+..+..++.-+.+.+.|++...+.|
T Consensus       287 ~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  334 (420)
T d1vp4a_         287 SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP  334 (420)
T ss_dssp             CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred             CchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCC
Confidence            44554444444443211  1  13344556666677777776654443

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0036  Score=44.05  Aligned_cols=101  Identities=14%  Similarity=0.029  Sum_probs=50.7

Q ss_pred             hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCC---EEEEchhhccCc----ccccc-ccccccccceeeccCCCHH
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPD---IVTFSKKMQLGG----YFLKP-EFVPQQAYRVFNTWMGDPG   74 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pD---i~t~gK~lg~gG----~~~~~-~~~~~~~~~~~~T~~~~p~   74 (119)
                      +.++++++|+||+...+.........  .. .  +.   +-+|||.++..|    ++..+ .+....... -.++..++.
T Consensus       163 ~~~~~~~ii~Dd~~~~~~~~~~~~~~--~~-~--~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~-~~~~~~s~~  236 (334)
T d2f8ja1         163 ILKTGAFVALDEAYYEFHGESYVDFL--KK-Y--ENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRV-RLPFNVSYV  236 (334)
T ss_dssp             HHTTTCEEEEECTTGGGTCCCCGGGG--GT-C--SSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHH-SCTTCSCHH
T ss_pred             cccceeEEeecccchhhccccccccc--cc-C--ceEEEEecCccccchhhhhhhhcccchHHHHHHHHh-hcccccchh
Confidence            45789999999997654222221111  11 1  22   238999875333    33332 232211111 122344566


Q ss_pred             HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhh
Q psy4800          75 KVLLLKGIIDTIHN-ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        75 ~~a~a~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      +..++.+.++..+. ++..+.+++.-+++.+.|+++
T Consensus       237 ~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  272 (334)
T d2f8ja1         237 SQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (334)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence            66666666554322 233445556666677777665

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.0015  Score=47.23  Aligned_cols=45  Identities=11%  Similarity=-0.011  Sum_probs=26.4

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE---EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV---TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~---t~gK~lg   47 (119)
                      ++|++|++++|.||+...+-.-+.........-.  ..++   +|||.++
T Consensus       193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~vi~~~S~SK~~~  240 (395)
T d1xi9a_         193 NIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD--VPVIVMNGLSKVYF  240 (395)
T ss_dssp             HHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS--SCEEEEEESTTTTC
T ss_pred             hhhhhcCeeEEeccccccccccccccchhhcCCC--CCEEEEeCcchhcc
Confidence            4799999999999998653222222111111111  2333   8999885

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0022  Score=46.23  Aligned_cols=19  Identities=16%  Similarity=-0.055  Sum_probs=17.3

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||+...+
T Consensus       200 ~~a~~~~~~ii~De~Y~~l  218 (397)
T d3tata_         200 EILKARELIPFLDIAYQGF  218 (397)
T ss_dssp             HHHHHTTCCCEECBSCTTS
T ss_pred             HHHhhcCeeEEeehhhhhh
Confidence            4799999999999999877

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=96.24  E-value=0.0019  Score=43.34  Aligned_cols=105  Identities=13%  Similarity=-0.013  Sum_probs=49.2

Q ss_pred             hhhhhCCEEEEccccccc--cCCCcchhhhhcCCCCCCCEEEEchhhccCcccc-----c-cccccccc---cceeeccC
Q psy4800           2 YEKYHGSALLIDEVQTGG--GPCGKFWCHEHFDLEESPDIVTFSKKMQLGGYFL-----K-PEFVPQQA---YRVFNTWM   70 (119)
Q Consensus         2 l~~~~~~lli~DEv~tG~--Gr~G~~~~~~~~g~~~~pDi~t~gK~lg~gG~~~-----~-~~~~~~~~---~~~~~T~~   70 (119)
                      .|+++|+++++|+++.+.  ...+...........  .++.++++..+ ++...     . ........   ....++..
T Consensus       158 ~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (340)
T d1svva_         158 SCKEHGLYLFLDGARLASALSSPVNDLTLADIARL--TDMFYIGATKA-GGMFGEALIILNDALKPNARHLIKQRGALMA  234 (340)
T ss_dssp             HHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH--CSEEEEECTTT-TCSSCEEEEECSGGGCTTHHHHHHHTTCCCT
T ss_pred             ccccccceeeeeccceeeeeccccccccccccccc--ceeeecCCccc-cccccccccccchhhhhhhhhhcccccCccc
Confidence            588999999999998742  222222221111111  45666666653 11111     1 11111111   11223333


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+...+++.+.++........++...+..++++.|+++
T Consensus       235 ~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (340)
T d1svva_         235 KGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC  273 (340)
T ss_dssp             TTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC
Confidence            334444433333332222345556667777777777765

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.011  Score=42.61  Aligned_cols=100  Identities=15%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEE--Echhhc--cCcc-ccccccccc---------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVT--FSKKMQ--LGGY-FLKPEFVPQ---------------   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t--~gK~lg--~gG~-~~~~~~~~~---------------   60 (119)
                      ++|+++|+++++|=+|+ .|..  ..-.+..+    +|+++  .=|.+|  +.|+ .+.+.+...               
T Consensus       187 ~~~~~~g~~~~vD~~q~-~g~~--~id~~~~~----~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~  259 (405)
T d1jf9a_         187 TLAHQHGAKVLVDGAQA-VMHH--PVDVQALD----CDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVS  259 (405)
T ss_dssp             HHHHHTTCEEEEECTTT-TTTS--CCCHHHHT----CSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECC
T ss_pred             hHHHHcCCeeeccccee-cccc--ccchhhcC----CceeeccccccccCCCceeeeechhhhcccCcccccccccCccc
Confidence            47999999999999985 3222  11223333    78874  558775  2222 222221100               


Q ss_pred             ----------cccceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          61 ----------QAYRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ----------~~~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                ...+...  ..|..+..+..++++++.+.   +..++...+.+++.+.++.+
T Consensus       260 ~~~~~~~~~~~~r~e~G--T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~  319 (405)
T d1jf9a_         260 LSEGTTWTKAPWRFEAG--TPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV  319 (405)
T ss_dssp             TTTCCEECCTTGGGCCS--SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cccccccccchhhhcCC--CCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcC
Confidence                      0001112  34677888888889987653   34444555555555555443

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=96.06  E-value=0.0045  Score=45.11  Aligned_cols=19  Identities=26%  Similarity=0.466  Sum_probs=16.4

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||++..+
T Consensus       216 ~~a~~~~~~vI~De~Y~~~  234 (431)
T d1m7ya_         216 SFVEDKGIHLISDEIYSGT  234 (431)
T ss_dssp             HHHHHHTCEEEEECTTGGG
T ss_pred             ccccccCcceeeccccccc
Confidence            3689999999999998754

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=96.03  E-value=0.019  Score=40.50  Aligned_cols=39  Identities=8%  Similarity=-0.011  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GDPGKVLLLKGIIDTIHNE----NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~----~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .+.....+..++++.+.+.    ...++..++.+++.++|+++
T Consensus       265 ~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~  307 (381)
T d1elua_         265 SAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL  307 (381)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcC
Confidence            4455666677778877643    23466778888888888876

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.011  Score=42.09  Aligned_cols=40  Identities=15%  Similarity=0.085  Sum_probs=25.0

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|++||+++++|.+|. +|..-  .-....+    +|++  ..-|.+|
T Consensus       167 ~~~~~~~~~~ivD~~~~-~g~~~--~d~~~~~----~D~~~~s~~k~~g  208 (391)
T d1p3wa_         167 EMCRARGIIYHVDATQS-VGKLP--IDLSQLK----VDLMSFSGHKIYG  208 (391)
T ss_dssp             HHHHHHTCEEEEECTTT-BTTBC--CCTTTSC----CSEEEEESTTTTS
T ss_pred             HHhccCCcEEEEeeccc-cCCcc--ccchhcc----ccccccccccccC
Confidence            47999999999999985 33221  1112222    6776  5567665

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.88  E-value=0.011  Score=41.74  Aligned_cols=100  Identities=11%  Similarity=0.100  Sum_probs=58.9

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE----chhhc--cCccccccc---------cccc-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF----SKKMQ--LGGYFLKPE---------FVPQ-----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~----gK~lg--~gG~~~~~~---------~~~~-----   60 (119)
                      ++|++||+++|.|.+|+ +|..  . --...|-   -|..++    .|.++  .||++....         +...     
T Consensus       140 ~i~~~~~i~vIeD~a~a-~g~~--~-~~~~~g~---~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~  212 (376)
T d1mdoa_         140 ALGERYGIPVIEDAAHA-TGTS--Y-KGRHIGA---RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD  212 (376)
T ss_dssp             HHHHHHTCCBCEECTTC-TTCE--E-TTEETTS---SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC
T ss_pred             HHHHhcCceEEeccchh-ccCe--e-CCeeccc---ccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCccc
Confidence            37999999999999985 4321  0 0011121   233333    37664  466655211         1100     


Q ss_pred             ---------c----ccceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 ---------Q----AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ---------~----~~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                               .    .......+-.+.+.++.+..-|+.+.  ++.++-+++.+++.+.|+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~--~~~~~r~~~~~~~~~~L~~~  272 (376)
T d1mdoa_         213 AWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADL  272 (376)
T ss_dssp             -----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTS
T ss_pred             ccccccccccccccchhcccccccchhhhhhhhhhhhhhh--HHHHHHhhhhhhhhhhcccc
Confidence                     0    01112455678888888888877764  45667788888888888875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.0031  Score=44.82  Aligned_cols=106  Identities=11%  Similarity=0.061  Sum_probs=49.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcc-hhhhhcCCC-CCCCEEEEchhhccCc----ccccc-ccccc-cccceeeccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKF-WCHEHFDLE-ESPDIVTFSKKMQLGG----YFLKP-EFVPQ-QAYRVFNTWMGD   72 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~-~~~~~~g~~-~~pDi~t~gK~lg~gG----~~~~~-~~~~~-~~~~~~~T~~~~   72 (119)
                      ++|++|++++|.||++.-+-..+.. -.....+.. ...-+-+|||.++..|    +.... .+... .......+...+
T Consensus       188 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~  267 (375)
T d1o4sa_         188 RLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCIN  267 (375)
T ss_dssp             HHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCC
T ss_pred             HhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhhcccccccc
Confidence            4799999999999997543222221 111111211 0022338999985233    33322 22111 111111121223


Q ss_pred             HHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ......+.   ..+++  ....+.++++-+.+.+.|++.
T Consensus       268 ~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~l~~~  303 (375)
T d1o4sa_         268 TVAQYAAL---KALEVDNSYMVQTFKERKNFVVERLKKM  303 (375)
T ss_dssp             HHHHHHHH---HHTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhh---hhcccchhhhHHHHHHHHHHHHHHHHhc
Confidence            33333222   23332  234455667777777777765

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.73  E-value=0.015  Score=41.75  Aligned_cols=23  Identities=22%  Similarity=0.095  Sum_probs=18.3

Q ss_pred             ChhhhhCCEEEEccccccccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG   23 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G   23 (119)
                      ++|++|++++|.||++..+.-.|
T Consensus       201 ~~~~~~~~~vi~De~Y~~~~~~~  223 (412)
T d1bw0a_         201 RLAEELRLPLFSDEIYAGMVFKG  223 (412)
T ss_dssp             HHHHHHTCCEEEECTTTTCBCCS
T ss_pred             cccccCCeeeechhhHHHhccCC
Confidence            36899999999999987763333

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0049  Score=45.60  Aligned_cols=104  Identities=15%  Similarity=0.117  Sum_probs=58.8

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc----ccccc-cccceeeccC
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP----EFVPQ-QAYRVFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~----~~~~~-~~~~~~~T~~   70 (119)
                      ++|++.|++|++|-+|. |+ -.|.  .++ -.+ ...|++  |.-|.|.  -||++...    .+... ....+....+
T Consensus       187 eiad~vga~l~~D~aH~~GL-Ia~g--~~~-sP~-~~aDvvt~tThKtlrGPrggiI~~~~~~~~~~~~i~~avfPg~qg  261 (416)
T d1dfoa_         187 EIADSIGAYLFVDMAHVAGL-VAAG--VYP-NPV-PHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQG  261 (416)
T ss_dssp             HHHHHTTCEEEEECTTTHHH-HHHT--SSC-CCT-TTSSEEEEESSSTTCCCSCEEEEESSCCHHHHHHHHHHHTTTTCS
T ss_pred             HHHHhcCceEEcchhhhhcc-eecc--ccC-Ccc-cccceeeeehhhcccCCCceEEEeccchHhHHHHHHhhhCccccc
Confidence            47999999999999995 65 1111  111 122 236998  7889996  47887742    22211 0111112212


Q ss_pred             CC-HHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          71 GD-PGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        71 ~~-p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      ++ +-..|+-..++....++   +..+++-++.+.|.+.|.+.
T Consensus       262 gp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~  304 (416)
T d1dfoa_         262 GPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER  304 (416)
T ss_dssp             SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            22 22333333344443333   45677889999999999775

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.45  E-value=0.032  Score=39.37  Aligned_cols=101  Identities=10%  Similarity=0.044  Sum_probs=61.3

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCcccccc--c-------cccc-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKP--E-------FVPQ-----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~--~-------~~~~-----   60 (119)
                      ++|+++|+.+|-|-+|+ +|-.  . --...|-.  -|+.+||    |.+.  .||.++..  .       +...     
T Consensus       132 ~~~~~~~i~vIED~a~a-~g~~--~-~~~~~G~~--gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~  205 (374)
T d1o69a_         132 EICKENDIVLIEDAAEA-LGSF--Y-KNKALGTF--GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENC  205 (374)
T ss_dssp             HHHHHTTCEEEEECTTC-TTCE--E-TTEETTSS--SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSS
T ss_pred             HHhhccCcchhhhhhhh-hcce--E-CCeecCCC--CceEEEeccCccccccccceeehhhhHHHHHhhccccccccccc
Confidence            47999999999999975 4321  1 11122322  5776554    6664  45665531  1       1111     


Q ss_pred             ---cccceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 ---QAYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ---~~~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                         .....+..+-.+.+.++.++.-|+.+.+  +.++-+++.+++.+.|.+.
T Consensus       206 ~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~--~i~~r~~i~~~y~~~L~~~  255 (374)
T d1o69a_         206 LHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY  255 (374)
T ss_dssp             SSCCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT
T ss_pred             cccccccCCccccccchhhhhhHHHHhhhhh--hcchhHHHHHHHHhhcccc
Confidence               0111344566899999999988887753  4555567777888888664

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=95.42  E-value=0.0017  Score=46.81  Aligned_cols=19  Identities=16%  Similarity=-0.087  Sum_probs=16.5

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++|++++|.||++..+
T Consensus       191 ~~a~~~~~~ii~De~Y~~~  209 (394)
T d1c7na_         191 DIVLKSDLMLWSDEIHFDL  209 (394)
T ss_dssp             HHHHHSSCEEEEECTTTTC
T ss_pred             ccccccceeEecccccccc
Confidence            3789999999999998754

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=95.40  E-value=0.023  Score=40.31  Aligned_cols=101  Identities=13%  Similarity=0.073  Sum_probs=59.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc----hhhc--cCccccccc---------cccc-----
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS----KKMQ--LGGYFLKPE---------FVPQ-----   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g----K~lg--~gG~~~~~~---------~~~~-----   60 (119)
                      ++|+++++++|-|-+|+ +|-.   ..-...|-.  -|+.+||    |.+.  .||+++...         +.+.     
T Consensus       141 ~~~~~~~i~lIEDaaqa-~Ga~---~~~~~~G~~--g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~  214 (371)
T d2fnua1         141 KLCKKHSLSFLSDSSHA-LGSE---YQNKKVGGF--ALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKK  214 (371)
T ss_dssp             HHHHHHTCEEEEECTTC-TTCE---ETTEETTSS--SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred             ccccccchhhccchhhc-cCce---eccccCCcc--ccccccccccccccccccceEEEeechhhhhhcccccccccccc
Confidence            37999999999999986 4321   111222333  4555443    6554  466665321         1110     


Q ss_pred             c-----ccceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 Q-----AYRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ~-----~~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .     ....+..+-.+.+.++.++.-|+.+.  ++.++-+++.+++.+.|.+.
T Consensus       215 ~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~--~~~~~R~~~~~~y~~~l~~~  266 (371)
T d2fnua1         215 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKDN  266 (371)
T ss_dssp             SSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccchhhhhhhhhhhhcc--chhhhhhhhhhhhccccccc
Confidence            0     11123455688999999988888775  34555666777777777653

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=95.31  E-value=0.016  Score=41.53  Aligned_cols=99  Identities=18%  Similarity=0.161  Sum_probs=59.2

Q ss_pred             ChhhhhCCEEEEccccccccCC--CcchhhhhcCCCCCCCEEE--E--chhhc--cCccccc-c-c-------cccc---
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPC--GKFWCHEHFDLEESPDIVT--F--SKKMQ--LGGYFLK-P-E-------FVPQ---   60 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~--G~~~~~~~~g~~~~pDi~t--~--gK~lg--~gG~~~~-~-~-------~~~~---   60 (119)
                      ++|++|++.+|.|-+|+ +|-.  |+.     .|-.  -|+.+  |  .|.+.  .||+++. + .       +.+.   
T Consensus       143 ~~~~~~~i~lieD~a~a-~ga~~~g~~-----~g~~--g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~  214 (384)
T d1b9ha_         143 KISADTGVPLLQDAAHA-HGARWQGKR-----VGEL--DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCG  214 (384)
T ss_dssp             HHHHHHTCCBCEECTTC-TTCEETTEE-----GGGS--SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTT
T ss_pred             hhhhhhhhhhhhhhcee-cccccCCEe-----cCcc--cccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCC
Confidence            37999999999999985 3322  221     1211  34433  3  57664  4666552 1 1       1110   


Q ss_pred             ----cc----cceeeccCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          61 ----QA----YRVFNTWMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        61 ----~~----~~~~~T~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                          ..    ...+..+-.+++.++.++.-|+.++  ++.++-+++.+++.+.|.++
T Consensus       215 ~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld--~~~~~R~~~~~~y~~~L~~~  269 (384)
T d1b9ha_         215 RPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI  269 (384)
T ss_dssp             CCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS
T ss_pred             Cccccccccccccccccccccchhhhhhhhhhhcc--cchhhhhhhhhhhhhhhhcc
Confidence                00    1123455688999888888887764  35566677888888888765

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=95.20  E-value=0.0092  Score=43.33  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=16.6

Q ss_pred             ChhhhhCCEEEEccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGG   19 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~   19 (119)
                      ++|++||+++|.||++..+
T Consensus       215 ~~a~~~~~~vI~De~Y~~~  233 (428)
T d1iaya_         215 SFTNQHNIHLVCDEIYAAT  233 (428)
T ss_dssp             HHHHTTTCEEEEECTTGGG
T ss_pred             eeeccCcEEEEeccccccc
Confidence            4799999999999998754

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=94.98  E-value=0.011  Score=42.57  Aligned_cols=23  Identities=13%  Similarity=-0.104  Sum_probs=18.8

Q ss_pred             ChhhhhCCEEEEccccccccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG   23 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G   23 (119)
                      ++|++||+++|.||++..+..-+
T Consensus       210 ~la~~~~~~ii~De~Y~~l~~~~  232 (412)
T d1ajsa_         210 SVMKRRFLFPFFDSAYQGFASGN  232 (412)
T ss_dssp             HHHHHHTCEEEEEESCTTTTTSC
T ss_pred             HHHhhCCEEEEecHhhhhhhcCC
Confidence            47999999999999998763333

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=94.73  E-value=0.097  Score=37.48  Aligned_cols=23  Identities=13%  Similarity=-0.045  Sum_probs=18.9

Q ss_pred             ChhhhhCCEEEEccccccccCCC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCG   23 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G   23 (119)
                      ++|++|++++|.||+..++.--+
T Consensus       203 ~~a~~~~~~ii~De~Y~~l~~~~  225 (412)
T d1yaaa_         203 DAIASKNHIALFDTAYQGFATGD  225 (412)
T ss_dssp             HHHHHTTCEEEEEESCTTTSSSC
T ss_pred             hhhccCCEEEeecceeeecccCC
Confidence            47999999999999998874333

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=94.65  E-value=0.11  Score=36.13  Aligned_cols=40  Identities=8%  Similarity=-0.050  Sum_probs=27.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg   47 (119)
                      ++|++||+++++|-|++ +|-  ...-.+  .+.  .|+.+..|.++
T Consensus       160 ~~~~~~~al~~vDavss-~g~--~~id~~--~~d--i~~~s~~k~~~  199 (361)
T d2c0ra1         160 AFPDTGSVPLIGDMSSD-ILS--RPFDLN--QFG--LVYAGAQKNLG  199 (361)
T ss_dssp             SCCCCTTSCEEEECTTT-TTS--SCCCGG--GCS--EEEEETTTTTC
T ss_pred             EeeccCCceEEEEeecc-ccc--cccccc--cce--eEEEecccccc
Confidence            47999999999999975 432  122222  233  78888889886

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.01  Score=42.46  Aligned_cols=20  Identities=20%  Similarity=0.024  Sum_probs=17.8

Q ss_pred             ChhhhhCCEEEEcccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG   20 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G   20 (119)
                      ++|++|++++|.||++.++.
T Consensus       199 ~la~~~~~~ii~De~Y~~l~  218 (396)
T d2q7wa1         199 QLSVEKGWLPLFDFAYQGFA  218 (396)
T ss_dssp             HHHHHHTCEEEEEESCTTSS
T ss_pred             HHHhcCCeEEEEeccccccc
Confidence            47999999999999998873

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=94.51  E-value=0.016  Score=41.50  Aligned_cols=20  Identities=15%  Similarity=-0.044  Sum_probs=17.7

Q ss_pred             ChhhhhCCEEEEcccccccc
Q psy4800           1 MYEKYHGSALLIDEVQTGGG   20 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~G   20 (119)
                      ++|++|++++|.||+...+.
T Consensus       202 ~~a~~~~~~ii~De~Y~~l~  221 (401)
T d7aata_         202 SVVKKRNLLAYFDMAYQGFA  221 (401)
T ss_dssp             HHHHHTTCEEEEEESCTTTT
T ss_pred             HHHhcceEEEEEeccchhhh
Confidence            47999999999999998773

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.45  E-value=0.012  Score=41.93  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=18.2

Q ss_pred             ChhhhhCCEEEEccccccccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGP   21 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr   21 (119)
                      ++|++|++++|.||+..++.-
T Consensus       196 ~la~~~~~~ii~De~Y~~l~~  216 (394)
T d2ay1a_         196 SILEKTGALPLIDLAYQGFGD  216 (394)
T ss_dssp             HHHHHHTCEEEEEECCTTSSS
T ss_pred             HHhhcceEEEEEeccchhhcc
Confidence            479999999999999988743

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.02  E-value=0.014  Score=42.42  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccc-ccc-cccc---cccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFL-KPE-FVPQ---QAYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~-~~~-~~~~---~~~~~~~T   68 (119)
                      ++|++||+++|+|....+      ...++....-  .||+  ...|-+++     +|.++ ... +...   .....+ .
T Consensus       157 ~iA~~~g~~~vVDnT~at------P~~~~Pl~~G--aDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G-~  227 (380)
T d1ibja_         157 EMAHAQGALVLVDNSIMS------PVLSRPLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEG-S  227 (380)
T ss_dssp             HHHHTTTCEEEEECTTTC------TTTCCGGGTT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTT-C
T ss_pred             HHHHHcCCeEEeeccccc------cccccccccC--CCEEEecccceeccccCccccccccchhhHHHHHHhhccccC-C
Confidence            478999999999997432      1122222222  7877  68888852     23322 211 1111   011111 1


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                       ..+|..+-.....|+-+.  -+.++..+++..+.+.|++
T Consensus       228 -~l~p~~a~ll~rgl~Tl~--lRm~~~~~nA~~lA~~L~~  264 (380)
T d1ibja_         228 -GLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSS  264 (380)
T ss_dssp             -BCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             -cCCHHHHHHHHhcchhhh--hhHHHHHHHHHHHHHHHHh
Confidence             356777766666655543  2445667777777777764

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.077  Score=37.06  Aligned_cols=17  Identities=12%  Similarity=-0.072  Sum_probs=12.2

Q ss_pred             hhhhCCEEEEccccccc
Q psy4800           3 EKYHGSALLIDEVQTGG   19 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~   19 (119)
                      +.+++.++|+||+..-|
T Consensus       172 ~~~~~~~~iidd~~~~f  188 (354)
T d1fg7a_         172 LTRGKAIVVADEAYIEF  188 (354)
T ss_dssp             HHTTTCEEEEECTTGGG
T ss_pred             cccccccccccccchhh
Confidence            34578888999986544

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=93.12  E-value=0.32  Score=33.53  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=15.0

Q ss_pred             ChhhhhCCEEEEccccc
Q psy4800           1 MYEKYHGSALLIDEVQT   17 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t   17 (119)
                      ++|+++|+++++|-+|.
T Consensus       167 ~~~~~~g~~~~vDa~~~  183 (377)
T d1vjoa_         167 ELCREFGTLLLVDTVTS  183 (377)
T ss_dssp             HHHHHHTCEEEEECTTT
T ss_pred             hhhhhccceEEEecchh
Confidence            37899999999999975

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=92.34  E-value=0.38  Score=32.94  Aligned_cols=40  Identities=10%  Similarity=0.011  Sum_probs=27.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK~lg   47 (119)
                      ++|++||+++|+|=+|+ +|-  ...-++.+  .  .|+.+++|-++
T Consensus       160 ~~~~~~g~l~ivDavqs-~g~--~~id~~~~--~--vd~~~~~~~k~  199 (360)
T d1w23a_         160 NFPEINHAPLIADMSSD-ILS--RPLKVNQF--G--MIYAGAQKNLG  199 (360)
T ss_dssp             SCCCCCSSCEEEECTTT-TTS--SCCCGGGC--S--EEEEETTTTTS
T ss_pred             eccccceeeEEeecccc-ccc--cccccccc--c--ceEEeeccccc
Confidence            57999999999999975 432  22222333  3  68888888875

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.34  E-value=0.053  Score=39.56  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccccc--eeeccC
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQAYR--VFNTWM   70 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~~~--~~~T~~   70 (119)
                      ++|+++|+++|+|....      ....++.+..-  .||+  ...|-+++     ||.+..+ .+.......  .... .
T Consensus       177 ~ia~~~g~~~vVDnT~a------tP~~~~Pl~~G--aDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~-~  247 (398)
T d1qgna_         177 KLCHEKGALVCIDGTFA------TPLNQKALALG--ADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGG-A  247 (398)
T ss_dssp             HHHHHTTCEEEEECTTT------CTTTCCTTTTT--CSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCC-C
T ss_pred             HHHhhcCCEEEecceee------ccccCCchhhC--CCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCC-c
Confidence            47899999999998732      22223323222  7887  67888852     2333221 111111100  1112 3


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+-..+..|+-+.  -+.++..+++..+.+.|++
T Consensus       248 l~p~~a~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~~  283 (398)
T d1qgna_         248 LNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEA  283 (398)
T ss_dssp             CCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHHh
Confidence            57777766655554442  2445666777777777765

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.85  E-value=0.2  Score=34.92  Aligned_cols=40  Identities=15%  Similarity=0.058  Sum_probs=27.3

Q ss_pred             CCCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHhh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENL---LDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~---~~~~~~~g~~l~~~L~~l  109 (119)
                      ..+.....+..++|+.+.++..   .++.+++.+++++.+.+.
T Consensus       256 Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~  298 (382)
T d2bkwa1         256 TPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG  298 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Confidence            3455577788889999876543   345566777787777653

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=91.76  E-value=0.4  Score=33.72  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             hhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-c-ccccc-c--cceeeccC
Q psy4800           3 EKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-E-FVPQQ-A--YRVFNTWM   70 (119)
Q Consensus         3 ~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~-~~~~~-~--~~~~~T~~   70 (119)
                      ++++|+++|+|....      ....++....-  +||+  ...|-+++     ||.++.. . +.... .  ...... .
T Consensus       110 a~~~~~~~vVDnT~a------tp~~~~pl~~G--aDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~-~  180 (331)
T d1pffa_         110 RKQKDILVIVDNTFA------SPILTNPLDLG--VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGA-I  180 (331)
T ss_dssp             TTSSSCEEEEECTTT------HHHHCCGGGGT--CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCC-C
T ss_pred             hcccCceEEeecccc------ccccccccccC--CCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCC-C
Confidence            467899999998732      23333333332  7887  67898842     2433322 1 11111 1  111122 4


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          71 GDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        71 ~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      .+|..+-..+..|+-+.  -+.++..++...+.+.|++
T Consensus       181 l~p~~a~ll~rgl~Tl~--~Rm~~~~~nA~~lA~~L~~  216 (331)
T d1pffa_         181 ISPHDAWLITRGTLTLD--MRVKRAAENAQKVAEFLHE  216 (331)
T ss_dssp             CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhh
Confidence            67888877777777664  2446666777777777664

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.35  E-value=0.89  Score=33.29  Aligned_cols=46  Identities=17%  Similarity=0.044  Sum_probs=28.8

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEE--chhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTF--SKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~--gK~lg   47 (119)
                      ++|++|+++|-+|=++.|+-..-...-.-..|++ ..|-+|+  -|.++
T Consensus       259 ~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~-~aDSit~d~HK~l~  306 (476)
T d1js3a_         259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE-FADSFNFNPHKWLL  306 (476)
T ss_dssp             HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGG-GCSEEEECHHHHSS
T ss_pred             HHHHhcCcEEEEecccchhhhhhcchhhhhcCCc-ccceeeecCccccc
Confidence            4899999999999887665322221111122443 4788865  58764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.02  E-value=0.1  Score=38.16  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCcccccc-cccccccccee-eccCCCH
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKP-EFVPQQAYRVF-NTWMGDP   73 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~-~~~~~~~~~~~-~T~~~~p   73 (119)
                      ++|++.|++|++|=+|. |+ -.|..  ++ -.+ ...|++  |.=|.|+  -||++... .+...-....+ ...+++.
T Consensus       185 eIad~vga~l~~D~aH~~GL-Ia~g~--~~-~P~-~~aDvvt~tThKtlrGPrgg~I~~~~~~~~~i~~avfPg~qggp~  259 (405)
T d1kl1a_         185 EIADEVGAYLMVDMAHIAGL-VAAGL--HP-NPV-PYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQGGPL  259 (405)
T ss_dssp             HHHHHHTCEEEEECTTTHHH-HHTTS--SC-CST-TTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCSSCC
T ss_pred             HHHhhhCCEEecchhhHhhh-hhhhh--cC-Chh-hhhhheeccccccccCCCCceEEecchhHHHHHhhhCcccccCcc
Confidence            47999999999999985 65 22211  11 112 237998  6779996  47777643 22211000111 1112222


Q ss_pred             H-HHHHHHHHHHH-Hhh--hcHHHHHHHHHHHHHHHHHhh
Q psy4800          74 G-KVLLLKGIIDT-IHN--ENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        74 ~-~~a~a~a~l~~-i~~--~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      . ..|+-..++.. +..  .+..+++.++.+.|.+.|.+.
T Consensus       260 ~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~  299 (405)
T d1kl1a_         260 MHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE  299 (405)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2 22222223333 332  246677889999999988765

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=90.01  E-value=0.32  Score=35.31  Aligned_cols=76  Identities=20%  Similarity=0.096  Sum_probs=39.6

Q ss_pred             hhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhccC----cccc-cc-cccccc-ccceeeccCCCHH
Q psy4800           4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQLG----GYFL-KP-EFVPQQ-AYRVFNTWMGDPG   74 (119)
Q Consensus         4 ~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~g----G~~~-~~-~~~~~~-~~~~~~T~~~~p~   74 (119)
                      -.+++.+|.||+.-+.     .+.. .... .+.+|+  +|||..|..    |+.+ .+ .+.+.. .....+|++.+.+
T Consensus       216 v~~~~~~I~DEaY~~~-----~f~~-~~~~-~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~  288 (425)
T d2hoxa1         216 VIKGCKSIYDMVYYWP-----HYTP-IKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRE  288 (425)
T ss_dssp             SSTTCEEEEECTTCST-----TTSC-CCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHH
T ss_pred             hhhCCEEEEeccccCc-----cccc-hhhh-cCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHH
Confidence            3568999999996321     1110 0011 124555  899998733    4432 22 232221 1222345566666


Q ss_pred             HHHHHHHHHHHH
Q psy4800          75 KVLLLKGIIDTI   86 (119)
Q Consensus        75 ~~a~a~a~l~~i   86 (119)
                      +-.++.++|+..
T Consensus       289 ~Q~aa~~aL~~~  300 (425)
T d2hoxa1         289 TQLRSLKVLKEV  300 (425)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            666777777653

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.058  Score=39.17  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=51.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cc-ccccc---ccceeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PE-FVPQQ---AYRVFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~-~~~~~---~~~~~~T   68 (119)
                      ++|+++|+++|+|....    +  ...++....-  .||+  ...|-+++     +|+++. .. +....   ....+. 
T Consensus       159 ~ia~~~g~~~vVDNT~a----t--P~~~~Pl~~G--aDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~-  229 (384)
T d1cs1a_         159 HLAREVGAVSVVDNTFL----S--PALQNPLALG--ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV-  229 (384)
T ss_dssp             HHHHHTTCEEEEECTTT----C--TTTCCGGGGT--CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTC-
T ss_pred             hhhhhcCcEEEEecccc----C--cccccccccC--CCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhh-
Confidence            37899999999999742    1  1122222222  7877  68898852     343332 11 11110   111111 


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                       ..+|..+-..+..|+-+.  -..++..+++..+.+.|++
T Consensus       230 -~~~p~~a~ll~rgL~TL~--lRm~~~~~nA~~lA~~L~~  266 (384)
T d1cs1a_         230 -TGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQT  266 (384)
T ss_dssp             -BCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTT
T ss_pred             -ccccccHHHHhhccchhH--HHHHHHHHHHHHHHHhccc
Confidence             356777666555554442  2345566777777776654

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=89.27  E-value=0.82  Score=33.25  Aligned_cols=40  Identities=15%  Similarity=0.170  Sum_probs=25.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ   47 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg   47 (119)
                      ++|+++|+++|+|....   -  ....++.+..-  +||+  ...|-++
T Consensus       168 ~iA~~~g~~~vvDnT~a---~--tP~~~~Pl~~G--aDiVvhS~TKyl~  209 (421)
T d2ctza1         168 QAAREKGVALIVDNTFG---M--GGYLLRPLAWG--AALVTHSLTKWVG  209 (421)
T ss_dssp             HHHHHHTCEEEEECGGG---G--GGTSCCGGGGT--CSEEEEETTTTTT
T ss_pred             HHHHhcCCceEeccccc---c--cceeccccccC--CcEEEEechhhcc
Confidence            47999999999999732   1  11122222222  7887  6788885

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=89.23  E-value=0.091  Score=38.19  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-ccccccc---cc-eeec
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQA---YR-VFNT   68 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~---~~-~~~T   68 (119)
                      ++|+++|+++|+|-...      ....++.+..-  +||+  ...|-+++     +|.+... ......+   .. ....
T Consensus       168 ~ia~~~g~~~vvDnT~a------tP~~~~Pl~~G--aDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~  239 (392)
T d1gc0a_         168 KIARKHGATVVVDNTYC------TPYLQRPLELG--ADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA  239 (392)
T ss_dssp             HHHGGGTCEEEEECTTT------HHHHCCGGGGT--CSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred             HHHHhcCCEEEEecCcc------CccccChHHhC--CCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCC
Confidence            47999999999998753      12222322222  7877  67898852     2333322 1211111   01 1122


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                       ..+|..+-..+..|+-+.  -..++..++...+.+.|++
T Consensus       240 -~~~p~da~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~~  276 (392)
T d1gc0a_         240 -VLSPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFLAR  276 (392)
T ss_dssp             -CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             -cCChhhHHHHHhccccHH--HHHHHHHHHHHHHHHHHHh
Confidence             457887777766665553  2445566777777666654

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.39  E-value=0.17  Score=37.70  Aligned_cols=104  Identities=16%  Similarity=0.119  Sum_probs=56.5

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccccc----------------ccc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE----------------FVP   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~----------------~~~   59 (119)
                      ++|++.|++|++|=+|. |+=-.|. + ...+   ...|++  |.=|.|.  -||++....                +..
T Consensus       202 eIad~vga~l~~D~aH~aGLIA~g~-~-~sPl---~~aDvvt~tTHKtlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~  276 (470)
T d1rv3a_         202 KIADENGAYLMADMAHISGLVVAGV-V-PSPF---EHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLES  276 (470)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHHHTS-S-CCGG---GTCSEEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHH
T ss_pred             HHHhccCCeEEecchhhhhhccccc-c-CChh---heeeeeeeehhhhccCCcceEEEEccccccccccccchhHHHHHH
Confidence            47999999999999995 6511121 1 1111   126998  6779995  478876421                111


Q ss_pred             cccccee-eccCCCHHHHHHHH-HHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          60 QQAYRVF-NTWMGDPGKVLLLK-GIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ~~~~~~~-~T~~~~p~~~a~a~-a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .-....+ .+.+++.....+++ .++....++   +..+++-++.+.|.+.|.+.
T Consensus       277 ~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~  331 (470)
T d1rv3a_         277 LINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL  331 (470)
T ss_dssp             HHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0001111 22233333333333 344444343   34566788888888888764

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=87.51  E-value=0.29  Score=36.26  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=56.4

Q ss_pred             ChhhhhCCEEEEccccc-cccCCCcchhhhhcCCCCCCCEE--EEchhhc--cCccccccc----------------ccc
Q psy4800           1 MYEKYHGSALLIDEVQT-GGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ--LGGYFLKPE----------------FVP   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~t-G~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg--~gG~~~~~~----------------~~~   59 (119)
                      ++|++.|++|++|=+|. |+=-.| .+- ..+.   ..|++  |.=|.|.  -||++....                +..
T Consensus       198 eIad~vga~l~~D~aH~aGLIA~g-~~~-sP~~---~aDvvt~tTHKTlrGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~  272 (463)
T d2a7va1         198 EVCDEVKAHLLADMAHISGLVAAK-VIP-SPFK---HADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFED  272 (463)
T ss_dssp             HHHHHTTCEEEEECGGGHHHHHTT-SSC-CGGG---TCSEEEEESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHH
T ss_pred             HHhhcccceEEechhhhhHHhhhh-hhc-Chhh---hhhhhhchhhhhhcCCCceEEEEcccccccccccCccchhHHHH
Confidence            47999999999999995 651112 111 1111   26998  5679996  478877432                110


Q ss_pred             ccccceee-ccCCCHHHHHHH-HHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          60 QQAYRVFN-TWMGDPGKVLLL-KGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ~~~~~~~~-T~~~~p~~~a~a-~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                      .-....+- ..+++.....++ ..++....++   +...++-++.+.|.+.|.+.
T Consensus       273 ~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~  327 (463)
T d2a7va1         273 RINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  327 (463)
T ss_dssp             HHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            00001111 212322332222 2233333333   45567888888888888765

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=85.63  E-value=2.9  Score=28.70  Aligned_cols=102  Identities=9%  Similarity=0.080  Sum_probs=53.5

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEc--hhhc---c-Ccccc-cccccc--------------
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFS--KKMQ---L-GGYFL-KPEFVP--------------   59 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~g--K~lg---~-gG~~~-~~~~~~--------------   59 (119)
                      ++|+++|+++++|=+|+ +|..-.  -.+..+    +|+++++  |.+.   + +|+.. ...+..              
T Consensus       188 ~~~~~~~~~~~vD~~q~-~g~~~~--~~~~~~----~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~  260 (404)
T d1qz9a_         188 ALSHECGALAIWDLAHS-AGAVPV--DLHQAG----ADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSR  260 (404)
T ss_dssp             HHHHHHTCEEEEECTTT-TTTSCC--CHHHHT----CSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCT
T ss_pred             ccccccccceeEEeecc-cccccc--cccccc----ceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccc
Confidence            37999999999999986 433221  223333    6777554  7652   2 23332 111100              


Q ss_pred             ----------ccccceeeccCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhh
Q psy4800          60 ----------QQAYRVFNTWMGDPGKVLLLKGIIDTIHNE---NLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        60 ----------~~~~~~~~T~~~~p~~~a~a~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~l  109 (119)
                                ......+.....+..+.....+.++.+.+.   ...++...+.+++...+..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  323 (404)
T d1qz9a_         261 QFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQR  323 (404)
T ss_dssp             TSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhh
Confidence                      000011122245667777777778777653   34444555555555555544

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=85.52  E-value=0.24  Score=35.96  Aligned_cols=98  Identities=19%  Similarity=0.273  Sum_probs=52.6

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Ccccccc-cccccccc-ceeecc--
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLKP-EFVPQQAY-RVFNTW--   69 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~~-~~~~~~~~-~~~~T~--   69 (119)
                      ++|+++|+++|+|-...      ....++....-  .||+  .+.|-+++     ||.++.. ......+. .+..++  
T Consensus       172 ~iA~~~gi~~vvDnT~a------tP~~~~Pl~~G--aDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~  243 (397)
T d1y4ia1         172 GIAHQQGALLVVDNTFM------SPYCQQPLQLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  243 (397)
T ss_dssp             HHHHHTTCEEEEECTTT------CTTTCCGGGGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             HHhhcCCceEEecCccc------CcccCcchhcC--CCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCC
Confidence            37899999999998632      12223333222  6877  67788852     2333322 21111111 111111  


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          70 MGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        70 ~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                      ..+|..+-.++..|+-+.  -+.++-.+++..+.+.|++
T Consensus       244 ~l~p~~a~l~~rgl~TL~--lRm~~~~~nA~~lA~~L~~  280 (397)
T d1y4ia1         244 CMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEG  280 (397)
T ss_dssp             CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            356777776666655543  2345566777777777764

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=85.15  E-value=0.31  Score=35.21  Aligned_cols=95  Identities=14%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             hhhh--hCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-ccccccc---ccceeec
Q psy4800           2 YEKY--HGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFVPQQ---AYRVFNT   68 (119)
Q Consensus         2 l~~~--~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~~~~---~~~~~~T   68 (119)
                      +|++  +|+++|+|....      ....++.+..-  .||+  ...|-+++     ||.++. +.+....   ....+. 
T Consensus       168 ~a~~~~~g~~~vVDnT~a------tP~~~~Pl~~G--aDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~-  238 (391)
T d1cl1a_         168 AVRSVVPDAIIMIDNTWA------AGVLFKALDFG--IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQ-  238 (391)
T ss_dssp             HHHHHCTTCEEEEECTTT------TTTSSCGGGGT--CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTC-
T ss_pred             HHHhccCCcEEEEecccc------chhhhcccccc--cceEEeecchhccccccccccceeccccccccchhhhhcccc-
Confidence            4555  499999999742      12122222222  6877  67888852     333332 2221110   111111 


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy4800          69 WMGDPGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLG  108 (119)
Q Consensus        69 ~~~~p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  108 (119)
                       ..+|..+-..+..|+-+.  -..++..+++..+.+.|++
T Consensus       239 -~~~p~~a~ll~rgl~TL~--lR~~~~~~nA~~vA~~L~~  275 (391)
T d1cl1a_         239 -MVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLAE  275 (391)
T ss_dssp             -CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             -cCCchhhhhhhccchhHH--HHHHHHHHHHHHHHHHHHh
Confidence             346666555544444432  2445566777777777654

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=83.29  E-value=3.7  Score=27.98  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=24.1

Q ss_pred             ChhhhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEEEEch
Q psy4800           1 MYEKYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIVTFSK   44 (119)
Q Consensus         1 ~l~~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~t~gK   44 (119)
                      ++|+++++++++|-+|+ +|-  ...-.+.++    .|++++++
T Consensus       166 ~~~~~~~~~~~vD~~ss-~g~--~pid~~~~~----~d~~~~s~  202 (388)
T d2ch1a1         166 QICHQHDCLLIVDAVAS-LCG--VPFYMDKWE----IDAVYTGA  202 (388)
T ss_dssp             HHHHHTTCEEEEECTTT-BTT--BCCCTTTTT----CCEEECCC
T ss_pred             chhccccceeeeeeeec-ccc--cccchhccC----ceEEEEcc
Confidence            37899999999999976 331  222222222    78887664

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.31  E-value=0.19  Score=36.40  Aligned_cols=92  Identities=12%  Similarity=0.168  Sum_probs=49.2

Q ss_pred             hhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhc-----cCccccc-cc-cccccc--cceeeccCCCH
Q psy4800           5 YHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQ-----LGGYFLK-PE-FVPQQA--YRVFNTWMGDP   73 (119)
Q Consensus         5 ~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg-----~gG~~~~-~~-~~~~~~--~~~~~T~~~~p   73 (119)
                      ++|+++|+|....      ....++.+..-  .||+  ...|-++     .+|.++. .. +...-.  ...... ..+|
T Consensus       170 ~~g~~lvVDnT~a------tP~~~~Pl~~G--ADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~-~~~p  240 (393)
T d1n8pa_         170 GQDVILVVDNTFL------SPYISNPLNFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGA-IPSP  240 (393)
T ss_dssp             TTTCEEEEECTTT------HHHHCCGGGGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCC-CCCH
T ss_pred             cCCceEEEecCcc------CcccCCchhhC--CCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCC-CCCh
Confidence            7899999999742      22223333222  7887  6889885     2344332 11 211100  011122 3578


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy4800          74 GKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRL  107 (119)
Q Consensus        74 ~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~  107 (119)
                      ..+-..+..|+-+.  -+.++..++...+.+.|+
T Consensus       241 ~~a~ll~rgl~Tl~--lR~~~~~~nA~~lA~~L~  272 (393)
T d1n8pa_         241 FDAWLTHRGLKTLH--LRVRQAALSANKIAEFLA  272 (393)
T ss_dssp             HHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCcchh--hHHHHHHHHHHHHHHHHH
Confidence            77766666655543  244556666667777764

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=81.02  E-value=0.83  Score=32.85  Aligned_cols=96  Identities=11%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             hhhCCEEEEccccccccCCCcchhhhhcCCCCCCCEE--EEchhhcc-----Cccccc-cccccc-cccceeecc--CCC
Q psy4800           4 KYHGSALLIDEVQTGGGPCGKFWCHEHFDLEESPDIV--TFSKKMQL-----GGYFLK-PEFVPQ-QAYRVFNTW--MGD   72 (119)
Q Consensus         4 ~~~~~lli~DEv~tG~Gr~G~~~~~~~~g~~~~pDi~--t~gK~lg~-----gG~~~~-~~~~~~-~~~~~~~T~--~~~   72 (119)
                      +++|+++|+|....    +  ...++.+..-  .||+  ...|-+++     +|.++. ...... .......+.  ..+
T Consensus       172 ~~~g~~vvvDnT~a----t--P~~~~Pl~~G--aDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~ls  243 (394)
T d1e5ea_         172 SQEGVLVIADNTFC----S--PMITNPVDFG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS  243 (394)
T ss_dssp             TSTTCEEEEECTTT----C--TTTCCGGGGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCC
T ss_pred             cccCeEEEecCccc----C--cccCCchhcC--CCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCC
Confidence            45789999998742    1  1122222222  6877  68898852     343332 221111 111111111  356


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy4800          73 PGKVLLLKGIIDTIHNENLLDRVQKTGDILLNVRLGL  109 (119)
Q Consensus        73 p~~~a~a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~l  109 (119)
                      |..+-..+..|+-+.  -+.++..+++..+.+.|++.
T Consensus       244 p~~a~ll~rgl~TL~--lRm~r~~~nA~~lA~~L~~h  278 (394)
T d1e5ea_         244 PHDAWLITRGLSTLN--IRMKAESENAMKVAEYLKSH  278 (394)
T ss_dssp             HHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHhhchhHH--HHHHHHHHHHHHHHHHHhhc
Confidence            777776666655543  24456667777777777653