Psyllid ID: psy4805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccEEEEEccccccccHcEEcccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mmcgscsnenaYKNIFIWYQnkqrggasgftkeeqessminqapgapnlsilsfkgafhgrtlgclstthskyihkidipafdwpiasfpkykypleenerenkaeDEKCLAEVEDLITKYnkkgtpvagivvepiqseggdnhgsnyFFQQLQKIGKK
Flexible Loop (DISEMBL)
MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENerenkaedeKCLAEVEDLITkynkkgtpvAGIVVEPIqseggdnhgsnYFFQqlqkigkk
Low Complexity Region (SEG)
MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLeenerenkaedekCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK
Disordered region (IsUnstruct)
*********NAYKNIFIWYQN***************************LSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPL*************CLAEVEDLITKYNKKGTPVAGIVVEPI***********YFF*********
Disordered Region (DISOPRED)
*MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK
Disordered Region (DISEMBL)
MMCGSCSNENAYKNIFIWYQNKQR***************INQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEE**********KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK
Disordered Region (DISPRO)
**CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
P80147	500	4-aminobutyrate aminotran	yes	N/A	0.993	0.316	0.691	3e-63
P80404	500	4-aminobutyrate aminotran	yes	N/A	0.993	0.316	0.685	1e-62
P61922	500	4-aminobutyrate aminotran	no	N/A	0.993	0.316	0.672	2e-62
P50554	500	4-aminobutyrate aminotran	yes	N/A	0.993	0.316	0.672	4e-62
Q9BGI0	500	4-aminobutyrate aminotran	yes	N/A	0.993	0.316	0.672	1e-60
Q55FI1	495	4-aminobutyrate aminotran	yes	N/A	0.968	0.311	0.613	5e-51
P14010	498	4-aminobutyrate aminotran	yes	N/A	0.974	0.311	0.591	5e-50
Q21217	483	Probable 4-aminobutyrate	yes	N/A	0.993	0.327	0.566	1e-49
P49604	509	4-aminobutyrate aminotran	N/A	N/A	0.993	0.310	0.546	8e-48
P17649	471	4-aminobutyrate aminotran	yes	N/A	0.974	0.329	0.537	5e-44

>sp|P80147|GABT_PIG 4-aminobutyrate aminotransferase, mitochondrial OS=Sus scrofa GN=ABAT PE=1 SV=2

 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 132/159 (83%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M CGSCSNENA+K IF+WY++K+RG  S F+KEE E+ MINQAPG P+ SILSF GAFHG
Sbjct: 161 MACGSCSNENAFKTIFMWYRSKERG-QSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 219

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPLEE  +EN+ E+ +CL EVEDLI K
Sbjct: 220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 280 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 318

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.
Sus scrofa (taxid: 9823)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp|P80404|GABT_HUMAN 4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens GN=ABAT PE=1 SV=3

 Score =  238 bits (607), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 131/159 (82%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M CGSCSNENA K IF+WY++K+RG   GF++EE E+ MINQAPG P+ SILSF GAFHG
Sbjct: 161 MACGSCSNENALKTIFMWYRSKERG-QRGFSQEELETCMINQAPGCPDYSILSFMGAFHG 219

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPLEE  +EN+ E+ +CL EVEDLI K
Sbjct: 220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 280 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 318

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P61922|GABT_MOUSE 4-aminobutyrate aminotransferase, mitochondrial OS=Mus musculus GN=Abat PE=1 SV=1

 Score =  237 bits (605), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 131/159 (82%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M CGSCSNENA+K IF+WY++K+RG   GF+KEE E+ M+NQ+PG P+ SILSF GAFHG
Sbjct: 161 MACGSCSNENAFKTIFMWYRSKERG-QRGFSKEELETCMVNQSPGCPDYSILSFMGAFHG 219

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPLEE   +N+ E+ +CL EVEDLI K
Sbjct: 220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFTTDNQQEEARCLEEVEDLIVK 279

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 280 YRKKKRTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 318

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P50554|GABT_RAT 4-aminobutyrate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Abat PE=1 SV=3

 Score =  236 bits (603), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 131/159 (82%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M CGSCSNENA+K IF+WY++K+RG   GF+KEE E+ M+NQ+PG P+ SILSF GAFHG
Sbjct: 161 MACGSCSNENAFKTIFMWYRSKERG-QRGFSKEELETCMVNQSPGCPDYSILSFMGAFHG 219

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPLEE   +N+ E+ +CL EVEDLI K
Sbjct: 220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVTDNQQEEARCLEEVEDLIVK 279

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 280 YRKKKRTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 318

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9BGI0|GABT_BOVIN 4-aminobutyrate aminotransferase, mitochondrial OS=Bos taurus GN=ABAT PE=2 SV=1

 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 128/159 (80%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M CGSCSNEN  K IF+WY++K+RG   GF +EE E+ MINQAP  P+ SILSF GAFHG
Sbjct: 161 MACGSCSNENGLKTIFMWYRSKERG-QRGFPQEELETCMINQAPWCPDYSILSFMGAFHG 219

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPLEE  +EN+ E+ +CL EVEDLI K
Sbjct: 220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 280 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIPRK 318

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q55FI1|GABT_DICDI 4-aminobutyrate aminotransferase OS=Dictyostelium discoideum GN=gabT PE=3 SV=1

 Score =  199 bits (507), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 119/158 (75%), Gaps = 4/158 (2%)

Query: 2   MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGR 61
           MCGSC+NE AYK +F+ YQ+ +RGG   FT EE  S M NQ PG+P+LSILSFK  FHGR
Sbjct: 158 MCGSCANECAYKAVFMHYQHVKRGGKP-FTPEELSSCMKNQEPGSPSLSILSFKKGFHGR 216

Query: 62  TLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKY 121
           T G LSTT SK IHK+DIPAFDWP A+FP  KYPL E+ +EN+  +++CL EVE LI  +
Sbjct: 217 TFGTLSTTRSKAIHKLDIPAFDWPAATFPDLKYPLAEHAKENREIEDRCLQEVEQLIKTW 276

Query: 122 NKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           +    PVAGI+VEPIQ+EGGDN+ + YFFQ L+ I KK
Sbjct: 277 H---IPVAGIIVEPIQAEGGDNYATPYFFQGLRDITKK 311

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P14010|GABAT_EMENI 4-aminobutyrate aminotransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=gatA PE=3 SV=1

 Score =  196 bits (498), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 118/159 (74%), Gaps = 4/159 (2%)

Query: 2   MCGSCSNENAYKNIFIWYQNKQRGGASG-FTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M GS +NE AYK  F++Y+ +QRGG    FT+EE +SSM+NQ PG+P LSI+SFK  FHG
Sbjct: 162 MAGSDANETAYKAAFMYYRQQQRGGPEKEFTEEEIQSSMLNQTPGSPQLSIMSFKAGFHG 221

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           R  G LSTT SK IHK+DIPAFDWP A FP  KYPLEE+ +EN  E+++CL E E LI +
Sbjct: 222 RLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHAKENAEEEQRCLQEAERLIKE 281

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           ++    PVA I+VEPIQSEGGDNH S  FF+ L++I K+
Sbjct: 282 WH---NPVAAIIVEPIQSEGGDNHASPAFFRGLREITKR 317

Deaminates gamma-aminobutyric acid (GABA) to succinate-semialdehyde, which in turn is converted to succinate by the succinate semialdehyde dehydrogenase (By similarity). Required for the degradation of GABA, which is important for utilization of GABA as nitrogen source.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q21217|GABT_CAEEL Probable 4-aminobutyrate aminotransferase, mitochondrial OS=Caenorhabditis elegans GN=gta-1 PE=1 SV=1

 Score =  195 bits (495), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/159 (56%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M+CG+ +NENA K  FIWYQ ++RGG  G      ES M  Q PG PNLS++ F+GAFHG
Sbjct: 145 MLCGTSANENAIKTAFIWYQAQRRGGL-GPDALHLESCMNQQKPGTPNLSVMGFEGAFHG 203

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           R+L  LS T SK IHK+DIPAFDWPIA FP+YKYPL++N   NK +D++CLA+VE  I++
Sbjct: 204 RSLCMLSVTRSKPIHKVDIPAFDWPIAKFPRYKYPLDQNVAYNKKQDQECLADVEAKISE 263

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           + ++   VA I+VEPIQ+EGGD++GS  FFQ L+ I  K
Sbjct: 264 WKRRDNDVAAIIVEPIQAEGGDHYGSPAFFQGLRDITSK 302

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P49604|GABAT_USTMA 4-aminobutyrate aminotransferase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=GATA PE=2 SV=2

 Score =  189 bits (479), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 2   MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGR 61
           MCGSC+NENA+K  F+ Y+ ++RG  + FT EE  S M NQ+PG+P+LSILSF  AFHGR
Sbjct: 164 MCGSCANENAFKASFMAYRARERGEKAEFTPEEMSSCMKNQSPGSPDLSILSFTSAFHGR 223

Query: 62  TLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKY 121
             G LS T SK IHK+DIP+F+WP+  +P  KYP  +N REN   ++  LA VE+ I   
Sbjct: 224 LFGSLSATRSKAIHKLDIPSFNWPVVEWPDVKYPFAQNSRENAEAEKVALAAVEEAIVSS 283

Query: 122 NKKGT---PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
            K G+   PVA ++VEPIQSEGGDNH S  FFQ L+ + KK
Sbjct: 284 KKTGSSYGPVAALIVEPIQSEGGDNHASPAFFQGLRDVTKK 324

Deaminates gamma-aminobutyric acid (GABA) to succinate-semialdehyde, which in turn is converted to succinate by the succinate semialdehyde dehydrogenase (By similarity). Not required for the utilization of GABA as nitrogen source.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P17649|GABAT_YEAST 4-aminobutyrate aminotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA1 PE=1 SV=2

 Score =  176 bits (446), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 3/158 (1%)

Query: 2   MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGR 61
           + G+ +NE A+K  FI+Y+ KQRG  + F+++E  S M N APGAP+L++LSFK AFHGR
Sbjct: 133 LSGADANELAFKAAFIYYRAKQRGYDADFSEKENLSVMDNDAPGAPHLAVLSFKRAFHGR 192

Query: 62  TLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKY 121
                STT SK IHK+D PAF WP A +P Y+YPL+EN   N+ ED+ CLA VE+LI  +
Sbjct: 193 LFASGSTTCSKPIHKLDFPAFHWPHAEYPSYQYPLDENSDANRKEDDHCLAIVEELIKTW 252

Query: 122 NKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           +    PVA +++EPIQSEGGDNH S YF Q+L+ I  K
Sbjct: 253 S---IPVAALIIEPIQSEGGDNHASKYFLQKLRDITLK 287

Required for the degradation of gamma-aminobutyric acid (GABA), which is important for utilization of GABA as nitrogen source and for oxidative stress tolerance. Deaminates GABA to succinate semialdehyde, which in turn is converted to succinate by the succinate-semialdehyde dehydrogenase UGA2. Cannot transaminate beta-alanine (BAL).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
312377903	1533	hypothetical protein AND_10663 [Anophele	1.0	0.103	0.761	3e-71
158286526	497	AGAP006966-PA [Anopheles gambiae str. PE	0.993	0.317	0.784	2e-70
193671580	494	PREDICTED: 4-aminobutyrate aminotransfer	1.0	0.321	0.754	8e-70
170045586	387	4-aminobutyrate aminotransferase, mitoch	0.993	0.408	0.779	2e-68
195435710	474	GK20289 [Drosophila willistoni] gi|19416	0.993	0.333	0.773	1e-66
157132998	495	4-aminobutyrate aminotransferase [Aedes	1.0	0.321	0.748	2e-66
195129679	469	GI13950 [Drosophila mojavensis] gi|19392	0.987	0.334	0.778	2e-66
332027288	497	4-aminobutyrate aminotransferase, mitoch	0.993	0.317	0.743	3e-66
157107761	354	4-aminobutyrate aminotransferase [Aedes	1.0	0.449	0.748	4e-66
383858091	500	PREDICTED: 4-aminobutyrate aminotransfer	0.993	0.316	0.75	6e-66

>gi|312377903|gb|EFR24619.1| hypothetical protein AND_10663 [Anopheles darlingi]

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 121/159 (76%), Positives = 137/159 (86%)

Query: 1    MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
            MMCGSCSNENA+KNIFIWYQ KQRG A+ F+++E +S M+NQ+PGAP LSILSF GAFHG
Sbjct: 1171 MMCGSCSNENAFKNIFIWYQKKQRGEATPFSEQEMQSCMVNQSPGAPKLSILSFHGAFHG 1230

Query: 61   RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
            RTLGCLSTTHSKYIHKID+P+FDWPIA FPKY+YPLEEN REN  ED +CLAEVE LI  
Sbjct: 1231 RTLGCLSTTHSKYIHKIDVPSFDWPIAPFPKYRYPLEENVRENAQEDARCLAEVERLIDL 1290

Query: 121  YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
            Y K+G PVAGI+VEPIQSEGGDN  S  FFQQLQ+I K+
Sbjct: 1291 YAKRGIPVAGIIVEPIQSEGGDNEASPEFFQQLQRIAKR 1329

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286526|ref|XP_308791.4| AGAP006966-PA [Anopheles gambiae str. PEST] gi|158286528|ref|XP_001688095.1| AGAP006966-PB [Anopheles gambiae str. PEST] gi|157020511|gb|EAA04779.4| AGAP006966-PA [Anopheles gambiae str. PEST] gi|157020512|gb|EDO64744.1| AGAP006966-PB [Anopheles gambiae str. PEST]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 136/158 (86%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENA+KNIFIWYQ KQRG A+ FT+ E +S MINQAPGAP LSILSF GAFHG
Sbjct: 157 MMCGSCSNENAFKNIFIWYQKKQRGEATPFTESEIQSCMINQAPGAPKLSILSFHGAFHG 216

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLGCLSTTHSKYIHKID+P+FDWPIA FP+Y+YPLEEN REN  ED +CLAEVE LI +
Sbjct: 217 RTLGCLSTTHSKYIHKIDVPSFDWPIAPFPQYRYPLEENVRENAQEDARCLAEVERLIEQ 276

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK 158
           Y K+G PVAGI+VEPIQSEGGDN  S  FFQQLQKI K
Sbjct: 277 YGKRGIPVAGIIVEPIQSEGGDNEASPEFFQQLQKIAK 314

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193671580|ref|XP_001951622.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  268 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 120/159 (75%), Positives = 137/159 (86%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENAYKN+F+ YQ  +RGG S FT  E+ES MIN  PGAP LSILSFKG+FHG
Sbjct: 154 MMCGSCSNENAYKNMFMKYQRDKRGGTSDFTDLEKESCMINMPPGAPKLSILSFKGSFHG 213

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLG LSTTHSKY+HK+D+PAFDWP+A FP+YKYPL EN +EN+ EDE+CLAEVE+LI K
Sbjct: 214 RTLGVLSTTHSKYVHKLDVPAFDWPMARFPEYKYPLHENLKENEQEDERCLAEVEELIEK 273

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           + KKG PVAGIVVEPIQ+EGGDNH S YFFQ+LQKI KK
Sbjct: 274 WEKKGNPVAGIVVEPIQAEGGDNHASPYFFQKLQKIAKK 312

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045586|ref|XP_001850384.1| 4-aminobutyrate aminotransferase, mitochondrial [Culex quinquefasciatus] gi|167868572|gb|EDS31955.1| 4-aminobutyrate aminotransferase, mitochondrial [Culex quinquefasciatus]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 136/159 (85%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENA+KNIFIWYQ++ RG A  F+++E  SSM+NQAPGAP LSILSF GAFHG
Sbjct: 48  MMCGSCSNENAFKNIFIWYQSQLRGKAP-FSEKEIASSMVNQAPGAPKLSILSFHGAFHG 106

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLGCLSTTHSKYIHKIDIP+FDWPIASFPKY+YPLEEN REN  ED +CLAEVE LI  
Sbjct: 107 RTLGCLSTTHSKYIHKIDIPSFDWPIASFPKYRYPLEENVRENAQEDARCLAEVEGLIEA 166

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KKG PVAGI+VEPIQSEGGDN  S  FFQ LQKI K+
Sbjct: 167 YAKKGIPVAGIIVEPIQSEGGDNEASPEFFQNLQKIAKR 205

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195435710|ref|XP_002065822.1| GK20289 [Drosophila willistoni] gi|194161907|gb|EDW76808.1| GK20289 [Drosophila willistoni]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 134/159 (84%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENAYK+IFIWYQNK RG   GFT+ E  S MIN  PGAP LSILSFKGAFHG
Sbjct: 136 MMCGSCSNENAYKSIFIWYQNKMRGNV-GFTENEMNSCMINMPPGAPKLSILSFKGAFHG 194

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLG LSTTHSKYIHK+D+P+FDWPIASFP+YKYPL+EN  ENK EDEKCLAEV+DLI +
Sbjct: 195 RTLGALSTTHSKYIHKLDVPSFDWPIASFPQYKYPLDENVAENKREDEKCLAEVQDLIEQ 254

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK  PVAG+VVEPIQSEGGDN GS  FF+ LQ I KK
Sbjct: 255 YKKKDIPVAGVVVEPIQSEGGDNEGSPEFFRALQGICKK 293

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132998|ref|XP_001656148.1| 4-aminobutyrate aminotransferase [Aedes aegypti] gi|108870984|gb|EAT35209.1| AAEL012609-PA [Aedes aegypti]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 131/159 (82%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENA+KNIFIWYQ  +RG    F++EE  S MINQAPGAP LSI+SF GAFHG
Sbjct: 155 MMCGSCSNENAFKNIFIWYQRVRRGENVSFSEEEINSCMINQAPGAPKLSIMSFHGAFHG 214

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLG LSTTHSKYIHKIDIP+FDWPIA FPKY+YPLEEN REN  ED +CLAEVE L  K
Sbjct: 215 RTLGTLSTTHSKYIHKIDIPSFDWPIAPFPKYRYPLEENVRENAQEDARCLAEVESLFEK 274

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KKG PVAG++VEPIQSEGGDN  S  FFQ LQ++ KK
Sbjct: 275 YAKKGIPVAGVIVEPIQSEGGDNEASPEFFQGLQRVTKK 313

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129679|ref|XP_002009283.1| GI13950 [Drosophila mojavensis] gi|193920892|gb|EDW19759.1| GI13950 [Drosophila mojavensis]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 134/158 (84%), Gaps = 1/158 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENA+K+IFIWYQNK RG A GFT +E +S MIN APGAP LSILSFKGAFHG
Sbjct: 131 MMCGSCSNENAFKSIFIWYQNKTRGDA-GFTIDEIDSCMINMAPGAPKLSILSFKGAFHG 189

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLG LSTTHSKYIHKIDIP+FDWPIASFP+YKYPL+EN  EN+ EDEKCL+EV+ LI  
Sbjct: 190 RTLGALSTTHSKYIHKIDIPSFDWPIASFPQYKYPLDENVAENRKEDEKCLSEVQSLIEA 249

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK 158
           Y KK  PVAGI+VEPIQSEGGDN  S  FFQ LQKI K
Sbjct: 250 YKKKDKPVAGIIVEPIQSEGGDNEASPEFFQALQKICK 287

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027288|gb|EGI67372.1| 4-aminobutyrate aminotransferase, mitochondrial [Acromyrmex echinatior]

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/160 (74%), Positives = 138/160 (86%), Gaps = 2/160 (1%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENA+KNIFIWY  KQR G   FTKEE ES M+NQ PG+P  SI+SFKG+FHG
Sbjct: 159 MMCGSCSNENAFKNIFIWYAEKQRQGKP-FTKEEIESCMMNQIPGSPRYSIMSFKGSFHG 217

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLGCLSTTHSKYIHK+DIPAFDWPIASFP+YKYPLEEN RENK ED++CLAEVE+L  K
Sbjct: 218 RTLGCLSTTHSKYIHKMDIPAFDWPIASFPEYKYPLEENVRENKQEDKRCLAEVEELFEK 277

Query: 121 Y-NKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y N+K  PVAG+++EPIQ+EGGDNH S  FFQ+LQ++ +K
Sbjct: 278 YKNEKKIPVAGVIIEPIQAEGGDNHASPEFFQELQRLIRK 317

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107761|ref|XP_001649926.1| 4-aminobutyrate aminotransferase [Aedes aegypti] gi|108868649|gb|EAT32874.1| AAEL014886-PA [Aedes aegypti]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 131/159 (82%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENA+KNIFIWYQ  +RG    F++EE  S MINQAPGAP LSI+SF GAFHG
Sbjct: 14  MMCGSCSNENAFKNIFIWYQRVRRGENVSFSEEEINSCMINQAPGAPKLSIMSFHGAFHG 73

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLG LSTTHSKYIHKIDIP+FDWPIA FPKY+YPLEEN REN  ED +CLAEVE L  K
Sbjct: 74  RTLGTLSTTHSKYIHKIDIPSFDWPIAPFPKYRYPLEENVRENAQEDARCLAEVESLFEK 133

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KKG PVAG++VEPIQSEGGDN  S  FFQ LQ++ KK
Sbjct: 134 YAKKGIPVAGVIVEPIQSEGGDNEASPEFFQGLQRVTKK 172

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858091|ref|XP_003704536.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Megachile rotundata]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 120/160 (75%), Positives = 135/160 (84%), Gaps = 2/160 (1%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           MMCGSCSNENA+KNIFIWY +KQR GA  FT++E  + M+NQ PGAP  SILSFKGAFHG
Sbjct: 162 MMCGSCSNENAFKNIFIWYADKQRKGAP-FTEQEVATCMMNQVPGAPKFSILSFKGAFHG 220

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLG LS THSKYIHKIDIPAFDWPIASFP YKYPL EN REN+ EDE+CLAEVE+L  K
Sbjct: 221 RTLGSLSVTHSKYIHKIDIPAFDWPIASFPDYKYPLNENVRENQQEDERCLAEVEELFEK 280

Query: 121 Y-NKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y N+K  PVAG+++EPIQSEGGDNH S  FFQ+LQ+I KK
Sbjct: 281 YNNEKKIPVAGVIIEPIQSEGGDNHASPEFFQKLQRITKK 320

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|E2R776	500	ABAT "Uncharacterized protein"	0.993	0.316	0.672	1.8e-55
FB|FBgn0036927	486	CG7433 [Drosophila melanogaste	0.987	0.323	0.691	4.8e-55
UNIPROTKB|J9JIL9	477	ABAT "4-aminobutyrate aminotra	0.993	0.331	0.660	2.1e-54
UNIPROTKB|P80147	500	ABAT "4-aminobutyrate aminotra	0.993	0.316	0.660	2.1e-54
UNIPROTKB|F1MFB7	500	ABAT "4-aminobutyrate aminotra	0.993	0.316	0.654	2.6e-54
MGI|MGI:2443582	500	Abat "4-aminobutyrate aminotra	0.993	0.316	0.647	2.6e-54
RGD|620948	500	Abat "4-aminobutyrate aminotra	0.993	0.316	0.647	3.4e-54
UNIPROTKB|H3BNQ7	515	ABAT "4-aminobutyrate aminotra	0.993	0.306	0.654	1.1e-53
UNIPROTKB|H3BRN4	515	ABAT "4-aminobutyrate aminotra	0.993	0.306	0.654	1.1e-53
UNIPROTKB|P80404	500	ABAT "4-aminobutyrate aminotra	0.993	0.316	0.654	1.1e-53

UNIPROTKB|E2R776 ABAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 107/159 (67%), Positives = 123/159 (77%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA+K IFIWY+NK+RG  +GF+KEE E+ MINQAPG P  SILSF GAFHG
Sbjct:   161 MSCGSCSNENAFKTIFIWYRNKERG-QTGFSKEELETCMINQAPGCPEYSILSFMGAFHG 219

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   280 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 318

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

FB|FBgn0036927 CG7433 [Drosophila melanogaster (taxid:7227)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 110/159 (69%), Positives = 123/159 (77%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             MMCGSCSNENAYK+IFIWYQNK RG A   T++E+ S MIN  PGAP LSILSFKGAFHG
Sbjct:   149 MMCGSCSNENAYKSIFIWYQNKLRGNAP-LTEQEKNSCMINIPPGAPKLSILSFKGAFHG 207

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RTLG LSTTHSKYIHK+D+P+FDWPIASFP+Y+YPL             CL+EV+DLI +
Sbjct:   208 RTLGALSTTHSKYIHKLDVPSFDWPIASFPEYRYPLDENVAHNKKEDEKCLSEVQDLIQQ 267

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y  K  PVAGIVVEPIQSEGGDN  S  FF+ LQ I KK
Sbjct:   268 YASKN-PVAGIVVEPIQSEGGDNEASPEFFRSLQAICKK 305

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|J9JIL9 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 105/159 (66%), Positives = 123/159 (77%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA+K IF+WY++K+RG  S F+KEE E+ MINQAPG P+ SILSF GAFHG
Sbjct:   138 MACGSCSNENAFKTIFMWYRSKERG-QSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 196

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   197 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 256

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   257 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 295

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

UNIPROTKB|P80147 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 105/159 (66%), Positives = 123/159 (77%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA+K IF+WY++K+RG  S F+KEE E+ MINQAPG P+ SILSF GAFHG
Sbjct:   161 MACGSCSNENAFKTIFMWYRSKERG-QSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 219

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   280 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 318

GO:0005829 "cytosol" evidence=TAS

GO:0048148 "behavioral response to cocaine" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;TAS

GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IDA

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=IDA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0042135 "neurotransmitter catabolic process" evidence=IC

GO:0042803 "protein homodimerization activity" evidence=ISS;IPI

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISS;IMP;IDA

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=IC

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

UNIPROTKB|F1MFB7 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 104/159 (65%), Positives = 124/159 (77%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA+K IF+WY++K+RG +S F+KEE E+ M+NQAPG P+ SILSF GAFHG
Sbjct:   161 MACGSCSNENAFKTIFMWYRSKERGQSS-FSKEELETCMVNQAPGCPDYSILSFMGAFHG 219

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   280 YRKKKRTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 318

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

MGI|MGI:2443582 Abat "4-aminobutyrate aminotransferase" [Mus musculus (taxid:10090)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 103/159 (64%), Positives = 123/159 (77%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA+K IF+WY++K+RG   GF+KEE E+ M+NQ+PG P+ SILSF GAFHG
Sbjct:   161 MACGSCSNENAFKTIFMWYRSKERG-QRGFSKEELETCMVNQSPGCPDYSILSFMGAFHG 219

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFTTDNQQEEARCLEEVEDLIVK 279

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   280 YRKKKRTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 318

GO:0001666 "response to hypoxia" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0007620 "copulation" evidence=ISO

GO:0007626 "locomotory behavior" evidence=ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010039 "response to iron ion" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0032144 "4-aminobutyrate transaminase complex" evidence=ISO

GO:0035094 "response to nicotine" evidence=ISO

GO:0042135 "neurotransmitter catabolic process" evidence=IEA

GO:0042220 "response to cocaine" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0045776 "negative regulation of blood pressure" evidence=ISO

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IMP

RGD|620948 Abat "4-aminobutyrate aminotransferase" [Rattus norvegicus (taxid:10116)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 103/159 (64%), Positives = 123/159 (77%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA+K IF+WY++K+RG   GF+KEE E+ M+NQ+PG P+ SILSF GAFHG
Sbjct:   161 MACGSCSNENAFKTIFMWYRSKERG-QRGFSKEELETCMVNQSPGCPDYSILSFMGAFHG 219

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVTDNQQEEARCLEEVEDLIVK 279

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   280 YRKKKRTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 318

GO:0001666 "response to hypoxia" evidence=IMP

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA;ISO;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISO;ISS;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0007620 "copulation" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=IC

GO:0010039 "response to iron ion" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;ISO;ISS

GO:0032144 "4-aminobutyrate transaminase complex" evidence=ISO;ISS

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=ISS

GO:0035094 "response to nicotine" evidence=IMP

GO:0042135 "neurotransmitter catabolic process" evidence=IC

GO:0042220 "response to cocaine" evidence=IMP

GO:0042493 "response to drug" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0043005 "neuron projection" evidence=IDA

GO:0045471 "response to ethanol" evidence=IDA

GO:0045776 "negative regulation of blood pressure" evidence=IMP

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=ISO;ISS

UNIPROTKB|H3BNQ7 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 104/159 (65%), Positives = 122/159 (76%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA K IF+WY++K+RG   GF++EE E+ MINQAPG P+ SILSF GAFHG
Sbjct:   161 MACGSCSNENALKTIFMWYRSKERG-QRGFSQEELETCMINQAPGCPDYSILSFMGAFHG 219

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   280 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 318

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|H3BRN4 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 104/159 (65%), Positives = 122/159 (76%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA K IF+WY++K+RG   GF++EE E+ MINQAPG P+ SILSF GAFHG
Sbjct:   176 MACGSCSNENALKTIFMWYRSKERG-QRGFSQEELETCMINQAPGCPDYSILSFMGAFHG 234

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   235 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 294

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   295 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 333

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|P80404 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 104/159 (65%), Positives = 122/159 (76%)

Query:     1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
             M CGSCSNENA K IF+WY++K+RG   GF++EE E+ MINQAPG P+ SILSF GAFHG
Sbjct:   161 MACGSCSNENALKTIFMWYRSKERG-QRGFSQEELETCMINQAPGCPDYSILSFMGAFHG 219

Query:    61 RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
             RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct:   220 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 279

Query:   121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct:   280 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARK 318

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0007620 "copulation" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0045776 "negative regulation of blood pressure" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IDA;TAS

GO:0042135 "neurotransmitter catabolic process" evidence=NAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=NAS

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IDA

GO:0007610 "behavior" evidence=NAS

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0048148 "behavioral response to cocaine" evidence=ISS

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P80404	GABT_HUMAN	2, ., 6, ., 1, ., 2, 2	0.6855	0.9937	0.316	yes	N/A
P14010	GABAT_EMENI	2, ., 6, ., 1, ., 1, 9	0.5911	0.9748	0.3112	yes	N/A
Q21217	GABT_CAEEL	2, ., 6, ., 1, ., 2, 2	0.5660	0.9937	0.3271	yes	N/A
P50554	GABT_RAT	2, ., 6, ., 1, ., 2, 2	0.6729	0.9937	0.316	yes	N/A
P80147	GABT_PIG	2, ., 6, ., 1, ., 2, 2	0.6918	0.9937	0.316	yes	N/A
Q55FI1	GABT_DICDI	2, ., 6, ., 1, ., 1, 9	0.6139	0.9685	0.3111	yes	N/A
P17649	GABAT_YEAST	2, ., 6, ., 1, ., 1, 9	0.5379	0.9748	0.3290	yes	N/A
Q9BGI0	GABT_BOVIN	2, ., 6, ., 1, ., 2, 2	0.6729	0.9937	0.316	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	2e-89
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	7e-30
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	6e-27
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	7e-27
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	4e-22
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	2e-20
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	1e-13
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	2e-11
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	3e-11
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	3e-10
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	3e-10
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	2e-09
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	2e-08
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	4e-07
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	6e-07
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	9e-07
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	3e-06
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	4e-06
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	1e-05
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	3e-05
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	4e-05
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	4e-05
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	5e-05
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	5e-05
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	2e-04
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	2e-04
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-04
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	2e-04
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	3e-04
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	3e-04
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	4e-04
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	4e-04
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	5e-04
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	9e-04
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	0.001
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	0.001
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	0.004
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	0.004

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score =  267 bits (684), Expect = 2e-89
 Identities = 101/159 (63%), Positives = 124/159 (77%), Gaps = 3/159 (1%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
            M GS +NE A+K  F++Y++KQRG  + F++EE ES M NQAPG+P+LSILSFKGAFHG
Sbjct: 128 GMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHG 187

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           R  G LSTT SK IHK+DIPAFDWP A FP  KYPLEE+ +EN  E+++CL EVEDLI K
Sbjct: 188 RLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK 247

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           ++K   PVA I+VEPIQSEGGDNH S  FF++L+ I KK
Sbjct: 248 WHK---PVAAIIVEPIQSEGGDNHASPDFFRKLRDITKK 283

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  110 bits (277), Expect = 7e-30
 Identities = 49/159 (30%), Positives = 62/159 (38%), Gaps = 31/159 (19%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M  GS +NE A K    + + K      G T +                 I++F G FHG
Sbjct: 82  MNSGSEANETAIKLARQYAKKK------GATGKT---------------KIIAFSGGFHG 120

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RTLG LS T S    K   P+            YP  E   E  A    C  E   LI  
Sbjct: 121 RTLGALSVTGSSGYKKGFGPSLPG----VYFLPYPDLEAAEEELA----CADEALRLIKA 172

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
            +     +A ++VEPIQ EGG       F   L++I KK
Sbjct: 173 VHDDN--IAAVIVEPIQGEGGVVPPPPGFLAGLREICKK 209

Length = 338

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  103 bits (260), Expect = 6e-27
 Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 39/160 (24%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           +  G+ + E A K    +   K+                           I+SF+GA+HG
Sbjct: 102 VNSGTEAVEAALKLARAYTGRKK---------------------------IISFEGAYHG 134

Query: 61  RTLGCLSTTHSK-YIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLIT 119
           RTLG LS T SK Y               +P    P  E            L  +E+ + 
Sbjct: 135 RTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELAD--------DLEALEEALE 186

Query: 120 KYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           ++ ++   VA ++VEPIQ EGG       + + L+++ +K
Sbjct: 187 EHPEE---VAAVIVEPIQGEGGVIVPPPGYLKALRELCRK 223

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  103 bits (260), Expect = 7e-27
 Identities = 32/109 (29%), Positives = 48/109 (44%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           +++F GAFHGRTLG LS T SK  +K         +   P             +   +  
Sbjct: 146 VIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA 205

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           L  +E  +         VA I++EPIQ EGG       F + L+K+ ++
Sbjct: 206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCRE 254

Length = 447

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 90.6 bits (225), Expect = 4e-22
 Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 25/157 (15%)

Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPN---LSILSFKGAFHG 60
           G+ + ENA K  F W   K R                NQA G P      +L  + AFHG
Sbjct: 112 GALAVENALKTAFDW---KSR---------------HNQARGIPAALGTQVLHLRQAFHG 153

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENEREN-KAEDEKCLAEVEDLIT 119
           R+   LS T++        P FDWP    PK  +PL+    +   A +E+ L +      
Sbjct: 154 RSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAF- 212

Query: 120 KYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              ++   +A  + EPIQ EGGDNH    F + ++ +
Sbjct: 213 --AERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRAL 247

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 25/152 (16%)

Query: 9   ENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAP---NLSILSFKGAFHGRTLGC 65
           ENA K  F W   K R                N+A G        +L  +GAFHGR+   
Sbjct: 124 ENALKVAFDW---KSR---------------KNEARGIDPALGTKVLHLRGAFHGRSGYT 165

Query: 66  LSTTHSKYIHKIDIPAFDWPIASFPKYKYPL-EENERENKAEDEKCLAEVEDLITKYNKK 124
           LS T++        P FDWP    PK ++PL  E+  E +A + + LA+      ++   
Sbjct: 166 LSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERH--- 222

Query: 125 GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              +A  + EPIQ EGGDNH    FF  ++++
Sbjct: 223 PHDIACFIAEPIQGEGGDNHFRPEFFAAMREL 254

Length = 443

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 42/125 (33%), Positives = 56/125 (44%), Gaps = 31/125 (24%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHK----------IDIPAFDWPIASFP-KYKYPLEEN 99
           I++F GAFHGRT G LS T SK + +          I +P        +P  Y+ P    
Sbjct: 144 IIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVP--------YPNPYRNPWGIE 195

Query: 100 ERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG-----DNHGSNYFFQQLQ 154
             E        L  +ED + K       VA I+VEPIQ EGG      N     FF++L+
Sbjct: 196 NPEECG--NAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKN-----FFKELR 248

Query: 155 KIGKK 159
           K+  K
Sbjct: 249 KLADK 253

Length = 441

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAE-DEK 109
           I+SF G FHGRTLG LS T SK  ++         +   P Y Y     + E+      +
Sbjct: 132 IISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAP-YPYCDRCPKGEDPEVCFLE 190

Query: 110 CLAEVEDLITKYNKKGTP--VAGIVVEPIQSEGG 141
           CL ++E L   +  + TP  VA +++EP+  EGG
Sbjct: 191 CLRDLESL---FKHQVTPEEVAAVIIEPVLGEGG 221

Length = 433

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 30/109 (27%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
           I++ + +FHGRTL  LS T                    PKY+    PL E        D
Sbjct: 130 IITAENSFHGRTLATLSATGQ------------------PKYQEGFEPLVEGFIYVPFND 171

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
                 +E L      K    A +++EPIQ EGG N     + Q L+++
Sbjct: 172 ------IEALKAAITDK---TAAVMLEPIQGEGGVNPADKEYLQALREL 211

Length = 396

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 30/112 (26%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
           I++F+ +FHGRT+G LS T                    PKY+    PL          D
Sbjct: 118 IIAFENSFHGRTMGALSATGQ------------------PKYQKGFEPLVPGFSYAPYND 159

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
            + L +  D            A ++VEPIQ EGG N  S  F + L++I K 
Sbjct: 160 IESLKKAID---------DETAAVIVEPIQGEGGVNPASAEFLKALREICKD 202

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 26/107 (24%)

Query: 51  ILSFKGAFHGRTLGCLSTT-HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEK 109
           I++F+GAFHGRTL  ++     KY     +  F   +  F +  +   E           
Sbjct: 123 IITFEGAFHGRTLATIAAGGQEKY-----LEGFGPLVPGFDQVPFGDIE----------- 166

Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
               ++  IT         A I++EPIQ EGG     + F + L+++
Sbjct: 167 ---ALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQL 204

Length = 389

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 24/106 (22%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           I++F+ +FHGRTLG LS T      K     F   +  F    +        N  E    
Sbjct: 132 IIAFENSFHGRTLGALSATGQPKYRK----GFGPLLPGFRHVPF--------NDIEA--- 176

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              +E  I          A ++VEPIQ EGG       F + L+++
Sbjct: 177 ---LEAAID------EDTAAVIVEPIQGEGGVIPAPPEFLKALREL 213

Length = 404

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA-FDWPIASFPKYKYPLEENERENKAEDEK 109
            L+F+  +HG T G +S       H +  P  F+      P      + ++ E      +
Sbjct: 126 FLAFRNGYHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDPDDCE-----AE 180

Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
           CLA +E L+ ++  +   +A  +VEP+ Q  GG
Sbjct: 181 CLAALEALLEEHADE---IAAFIVEPLVQGAGG 210

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 29/112 (25%)

Query: 51  ILSFKGAFHGRTLGCLSTTH---SKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAED 107
           I+   G F GRT+G  S +            +P F+        Y      N+ E     
Sbjct: 125 IIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFE-----LVDY------NDVE----- 168

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
                 +E L+   N     VA  +VEPIQ E G     + + +Q+ ++ KK
Sbjct: 169 -----ALEKLLQDPN-----VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKK 210

Length = 400

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 24/109 (22%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           I++F  +FHGRTL  +S +       I  P     +  FPK +     N+          
Sbjct: 127 IITFDHSFHGRTLATMSASGKPGWDTIFAPQ----VPGFPKAEL----ND---------- 168

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           +A VE LIT        VA +++EP+Q EGG    +  F QQL+ + K+
Sbjct: 169 IASVEKLIT-----DKTVA-VMLEPVQGEGGVIPATREFMQQLRALTKQ 211

Length = 395

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 14/112 (12%)

Query: 50  SILSFKGAFHGRTLGCLSTTHSKYIHK-IDIPAFDWPIASFPKYKYPLEENERENKAEDE 108
           +++SF  AFHG TLG LS T +++  +   +P  +  ++  P   Y   + +        
Sbjct: 127 NVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSN--VSRMPYDGYLGGDVDT------- 177

Query: 109 KCLAEVEDLITKYNKKGTPV-AGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
             +A  E L+   +  G  + A +++E +Q EGG N  S+ + Q+L+K+ ++
Sbjct: 178 --IAYFEKLLED-SSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRR 226

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           +++F   FHGRT   ++ T     +K     F   +   P   YP  +   + +   +  
Sbjct: 123 VVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAP-LPYPYRDGLLDKQLSTDGE 181

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           LA    +    +     VA +V+EP+Q EGG    +  F   L    ++
Sbjct: 182 LAAARAIF-VIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE 229

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           +++F GAFHGRTL  ++ T     +K+    F     S     YP   NE    + +E  
Sbjct: 130 VIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFP---GSIFHALYP---NELHGVSVEE-A 182

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           L+ VE L  K +     VA I++EPIQ EGG N     F   L+ +
Sbjct: 183 LSSVERLF-KADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTL 227

Length = 421

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 50  SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEK 109
           +++SF G FHG T+G L+ T + +    +      P   F  Y +               
Sbjct: 130 NVISFSGGFHGMTIGALAVTGNLF--AKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN 187

Query: 110 CLAE-VEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
              E  E+ I          A +++E IQ EGG     + + Q+++++ +K
Sbjct: 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK 238

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 50  SILSFKGAFHGRTLGCLSTTHSKYIHKIDIP-AFDWPIASFPKYKYPLEENERENKAEDE 108
             ++ K A+HG T+G +S       H++     F+     +P Y Y       + +   +
Sbjct: 150 RFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYP-YTYRSPYGNDKAEIVKK 208

Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGG 141
             L E+E+L+ +   K   +A I+VEP +Q  GG
Sbjct: 209 -HLEELEELLKE---KHEEIAAIIVEPLVQGAGG 238

Length = 460

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 50  SILSFKGAFHGRTLGCLSTTHSKYIHK-IDIPAFDWPIASF-PKYKYPLEENERENKAED 107
           +I++F   FHG TLG L+ T + +  +   +P  +    +  P   Y   + +       
Sbjct: 131 NIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNN---VTRMPYDGYFGGDVD------- 180

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
              LA +E L+   +      A ++VE +Q EGG N  S  + Q+L K+ +K
Sbjct: 181 --TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRK 230

Length = 425

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 25/93 (26%)

Query: 51  ILSFKGAFHGRTLGC--LSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE 108
           I+S KG FHGRTLG   +ST      +      F   +  F K  Y              
Sbjct: 131 IVSAKGNFHGRTLGAISMSTDPDSRTN------FGPYVPGFKKIPY-------------- 170

Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
                +E L       G  V   +VEPIQ E G
Sbjct: 171 ---NNLEALEEALEDHGPNVCAFIVEPIQGEAG 200

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 36/145 (24%)

Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
           GS + E A K        + RG       + Q                +S +  +HG TL
Sbjct: 114 GSEAVETALK--MALQYWRARG-------QPQRKK------------FISRRNGYHGDTL 152

Query: 64  GCLSTTHSKYIHKIDIPAFDWPI-----ASFPK-YKYPLEENERENKAEDEKCLAEVEDL 117
           G +S      +       +D  +        P  Y+        E  AE      E+E L
Sbjct: 153 GAMSVGGPVALRH---AFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE---AADELEAL 206

Query: 118 ITKYNKKGTPVAGIVVEPI-QSEGG 141
           I ++    T +A  +VEP+    GG
Sbjct: 207 ILEHG-PET-IAAFIVEPVVGGAGG 229

Length = 449

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 34/114 (29%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASF----PKYKY-PLEENERENKA 105
           I++F+ +FHGRT G +S T  + I              F    P + + P  + +   + 
Sbjct: 115 IVTFEQSFHGRTFGTMSATGQEKIK-----------EGFGPLLPGFTHVPFNDIKALKEV 163

Query: 106 EDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
            +E+                  VA +++E +Q EGG       F Q++Q + KK
Sbjct: 164 MNEE------------------VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKK 199

Length = 377

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)

Query: 51  ILSFKGAFHGRTLGCLSTT-----HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKA 105
           +++F GA+HGRT   L+ T     +S  +  +    +    A +P              +
Sbjct: 131 VIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYR---ALYP--------CPLHGVS 179

Query: 106 EDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           ED+  +A +E  I K +     +A I++EP+Q EGG    S  F Q+L+ +
Sbjct: 180 EDD-AIASIER-IFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRAL 228

Length = 425

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 32/95 (33%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPK----YKYPLEENERENKAE 106
           I++ +G FHGRT+G L+ T          PA   P    P       Y            
Sbjct: 131 IVAAEGGFHGRTMGALALTGQ--------PAKRAPFEPLPGGVEHVPYG----------- 171

Query: 107 DEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
           D   +  +   +          A + +EPIQ E G
Sbjct: 172 D---VDALAAAVD------DDTAAVFLEPIQGEAG 197

Length = 398

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 50  SILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASF-PKYKYPLEENERENKAEDE 108
           + ++  GAFHG++LG LS T          PAF  P     P + +    +         
Sbjct: 165 TFIAASGAFHGKSLGALSATAK--------PAFRKPFMPLLPGFHHVAFGDIEAMLKALN 216

Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
           +C            K G  VA I++EPIQ EGG
Sbjct: 217 EC-----------KKTGDDVAAIILEPIQGEGG 238

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 27/107 (25%)

Query: 52  LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCL 111
           +SF  +FHGRTLG L+ T  +                  +Y+ P E              
Sbjct: 115 VSFSNSFHGRTLGALALTSKE------------------QYRTPFEPLMPGVT------F 150

Query: 112 AEVEDL--ITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
            E  +L    K  +KG   A + VEP+Q EGG    +  F Q L+ +
Sbjct: 151 VEYGNLEAARKLIQKGK-TAAVFVEPVQGEGGIYPATKEFLQGLRAL 196

Length = 382

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 17/93 (18%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA-FDWPIASFPKYKYPLEENERENKAEDEK 109
            LS +G +HG T+G +S      +H +  P  F+   A FP   Y            ++ 
Sbjct: 137 FLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGY------------EQA 184

Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGG 141
            L  +E L+ K+  +   +A  +VEP +Q  GG
Sbjct: 185 TLDALEALLEKHAGE---IAAFIVEPLVQGAGG 214

Length = 423

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           +++F G FHGRT   ++ T     +KI    F   +   P   YP + +        +  
Sbjct: 130 VIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVP---YPSDLH----GISTQDS 182

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDN 143
           L  +E L  K + +   VA I+ EP+Q EGG N
Sbjct: 183 LDAIERLF-KSDIEAKQVAAIIFEPVQGEGGFN 214

Length = 421

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           I+SF   FHGRTL  ++ T     +K     F   +   P   +P E    E   E++  
Sbjct: 144 IISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAP---FPYEYRRPEGLTEEQYD 200

Query: 111 LAEVEDLITKYNKKGTP--VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
              +E+    +  +  P  +A +V+EP+Q EGG    S  F Q+++ I  +
Sbjct: 201 DFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSE 251

Length = 451

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 50  SILSFKGAFHGRTLGCLSTTHS----KYIHKI--DIPAFDWPIASFPKYKYPL----EEN 99
           ++LSF+G +HG + G LS   +    K +  +   +    +P      Y+ P     E  
Sbjct: 155 TVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYD----YRCPFGLGGEAG 210

Query: 100 ERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
            R N    E  L + E  +          A +++E +Q EGG
Sbjct: 211 VRANLHYLENLLDDPESGV-------VLPAAVILEVVQGEGG 245

Length = 464

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 29/94 (30%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
           I++F+G+FHGRTL  ++ T                    PKY+    PL    R     D
Sbjct: 134 IVTFRGSFHGRTLAAVTATAQ------------------PKYQEGYEPLPGGFRYVDFND 175

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
            + L             G  VA +++EPIQ EGG
Sbjct: 176 VEALEAA--------MAGGDVAAVMLEPIQGEGG 201

Length = 408

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           +++F G FHGRT   +S T     +K+   A    +   P   +P+E +        E+ 
Sbjct: 130 VIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVP---FPVELH----GVSVEQS 182

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           LA ++ L  K +     VA I++EP+Q EGG       F + L+++
Sbjct: 183 LAALDKLF-KADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALREL 227

Length = 425

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 18/86 (20%)

Query: 56  GAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVE 115
           GAFHG++LG LS T                 ++F K   PL    R     +   +  + 
Sbjct: 178 GAFHGKSLGALSATAK---------------STFRKPFMPLLPGFRHVPFGN---IEAMR 219

Query: 116 DLITKYNKKGTPVAGIVVEPIQSEGG 141
             +++  K G  VA +++EPIQ EGG
Sbjct: 220 TALSECKKTGDDVAAVILEPIQGEGG 245

Length = 459

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAED--- 107
           ++ F  A+HGRT   ++ T     +K     F   +     Y+ P+    R+ K      
Sbjct: 146 VVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEV-----YRAPMSYPYRDPKGLATDG 200

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
           E+  A    +I K       +A +++EPIQ EGG
Sbjct: 201 EEAAARAITVIEKQ-VGADNLAAVIIEPIQGEGG 233

Length = 443

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 28/93 (30%)

Query: 51  ILSFKGAFHGRTLGCLSTT-HSKYIHKIDIPAFDWPIASFPKYKY-PLEENERENKAEDE 108
           I++   AFHGRT+G LS T   KY    +      P+   P +K+ P  + E   +A   
Sbjct: 110 IIAMTNAFHGRTMGALSATWKPKYREDFE------PLV--PGFKHIPFNDVEAAKEA--- 158

Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGG 141
                    ITK        A ++ EPIQ EGG
Sbjct: 159 ---------ITK------ETAAVIFEPIQGEGG 176

Length = 364

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKID----IPAFDWPIASFPK-YKYPLEENERENKA 105
           IL+F GA+HG+TLG  S    +   K      +P   W    +P  Y+ P   N  E   
Sbjct: 142 ILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVW--IPYPNPYRNPWGINGYEEPD 199

Query: 106 E-DEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           E   + L  +E+ +  +      VA +  EPIQ + G       FF++L+K+
Sbjct: 200 ELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKL 251

Length = 457

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.98
KOG1405|consensus	484		99.98
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.98
PRK05965	459	hypothetical protein; Provisional	99.97
PRK07482	461	hypothetical protein; Provisional	99.97
PRK07678	451	aminotransferase; Validated	99.97
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
PRK07481	449	hypothetical protein; Provisional	99.97
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.96
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.96
PRK07483	443	hypothetical protein; Provisional	99.96
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.96
PRK07036	466	hypothetical protein; Provisional	99.96
KOG1401|consensus	433		99.96
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.96
PRK08297	443	L-lysine aminotransferase; Provisional	99.96
PRK07480	456	putative aminotransferase; Validated	99.96
PRK06917	447	hypothetical protein; Provisional	99.96
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.96
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.96
PRK06105	460	aminotransferase; Provisional	99.96
KOG1404|consensus	442		99.96
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.95
PRK06541	460	hypothetical protein; Provisional	99.95
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.95
PRK06062	451	hypothetical protein; Provisional	99.95
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.95
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.95
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.95
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.95
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.95
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.95
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.95
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.95
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.95
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.95
KOG1402|consensus	427		99.95
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.94
PRK12403	460	putative aminotransferase; Provisional	99.94
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.94
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.94
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.94
PRK06148	1013	hypothetical protein; Provisional	99.94
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.93
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.93
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.93
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.93
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.93
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.93
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.93
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.93
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.92
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.92
PLN00144	382	acetylornithine transaminase	99.92
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.92
PRK06149	972	hypothetical protein; Provisional	99.91
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.91
PRK07046	453	aminotransferase; Validated	99.9
PLN02624	474	ornithine-delta-aminotransferase	99.9
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.9
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.9
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.9
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.89
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.86
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.84
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.84
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.84
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.84
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.83
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.81
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.78
KOG1403|consensus	452		99.78
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.78
PRK04260	375	acetylornithine aminotransferase; Provisional	99.75
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.74
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.7
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.7
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.62
PRK02627	396	acetylornithine aminotransferase; Provisional	99.62
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.19
PRK07505	402	hypothetical protein; Provisional	98.78
PRK13393	406	5-aminolevulinate synthase; Provisional	98.52
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	98.07
PRK09064	407	5-aminolevulinate synthase; Validated	97.72
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	97.61
PLN02822	481	serine palmitoyltransferase	97.54
PRK13392	410	5-aminolevulinate synthase; Provisional	96.99
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	96.69
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	96.68
PRK07179	407	hypothetical protein; Provisional	96.56
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	96.46
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	95.71
PLN02721	353	threonine aldolase	95.27
cd00609	350	AAT_like Aspartate aminotransferase family. This f	94.49
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	93.82
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	93.65
PLN02880	490	tyrosine decarboxylase	92.69
PRK13520	371	L-tyrosine decarboxylase; Provisional	92.29
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	92.23
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	92.07
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	91.6
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	91.45
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	91.45
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	91.34
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	91.0
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	90.05
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	89.94
PRK12566	954	glycine dehydrogenase; Provisional	89.34
PLN02955	476	8-amino-7-oxononanoate synthase	89.32
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	89.2
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	88.73
PLN03032	374	serine decarboxylase; Provisional	87.91
PLN02651	364	cysteine desulfurase	86.96
PLN02590	539	probable tyrosine decarboxylase	86.85
PLN02263	470	serine decarboxylase	86.68
PRK14012	404	cysteine desulfurase; Provisional	86.17
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	86.04
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	85.15
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	85.04
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	84.84
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	84.82
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	84.34
PRK05367	954	glycine dehydrogenase; Provisional	84.2
PLN02414	993	glycine dehydrogenase (decarboxylating)	83.29
PRK07777	387	aminotransferase; Validated	82.91
PRK02769	380	histidine decarboxylase; Provisional	81.54
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	80.6
KOG1549|consensus	428		80.56
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	80.23

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-33  Score=233.95  Aligned_cols=129  Identities=30%  Similarity=0.390  Sum_probs=108.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcccc-ccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIH-KIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~-~~~~   79 (159)
                      +||||||||+||||||.|+                         |  |..||+|.++|||+|.++||+|++...+ ..+.
T Consensus       123 ~~sGaeA~E~AiKiAr~~T-------------------------g--r~~viaf~~afHG~T~galslT~~~~~~~~~~~  175 (447)
T COG0160         123 GNSGAEAVEAAIKIARAYT-------------------------G--RPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFG  175 (447)
T ss_pred             cCCcHHHHHHHHHHHHHHh-------------------------C--CCcEEEECCcccccchhhHHhccCccccccCCC
Confidence            4899999999999999995                         5  8899999999999999999999986544 3455


Q ss_pred             CCC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PAF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +.. ++.++|+|+ |++|+...   .+++...+++++++.+.....++.++||||+|||||+||+++||++||++||++|
T Consensus       176 ~~~~~v~~~Pyp~~yr~p~~~~---~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~  252 (447)
T COG0160         176 PLPPGVYHVPYPNPYRCPFGIG---GEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLC  252 (447)
T ss_pred             CCCCCeEEecCCccccCcccCc---hhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHH
Confidence            554 478899997 78876432   2456667788888877766566789999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ||
T Consensus       253 ~~  254 (447)
T COG0160         253 RE  254 (447)
T ss_pred             HH
Confidence            86

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-33  Score=229.11  Aligned_cols=110  Identities=31%  Similarity=0.429  Sum_probs=93.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ||||+||||.|||+||+|+.    +                  ++  |.+||+|.+||||+|++++|+|+.+.+++.|.|
T Consensus       106 ~NSGaEA~EaAiKlARk~~~----~------------------~~--k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~P  161 (404)
T COG4992         106 CNSGAEANEAALKLARKYTG----D------------------PE--KSKIIAFENSFHGRTLGALSATGQPKYRKGFGP  161 (404)
T ss_pred             cCCcHHHHHHHHHHHHHHcC----C------------------CC--CcEEEEEcCCcCCccceeeeccCChhhccCCCC
Confidence            79999999999999999962    1                  23  889999999999999999999999988887765


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|             |||      +++++++|.      +++||||+|||||+|||++||++||++||+||++
T Consensus       162 l~~g~~~vp-------------fnD------i~al~~ai~------~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~  216 (404)
T COG4992         162 LLPGFRHVP-------------FND------IEALEAAID------EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDE  216 (404)
T ss_pred             CCCCceecC-------------CCC------HHHHHHHhc------cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHH
Confidence            42 333333             456      788888886      3899999999999999999999999999999986

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.98  E-value=2.3e-32  Score=226.75  Aligned_cols=133  Identities=22%  Similarity=0.320  Sum_probs=105.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcccc-ccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIH-KIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~-~~~~   79 (159)
                      ++|||||||.|||||++||+.+  |+                 |+  |++||++++||||.|+++||++|....+ ..+.
T Consensus       111 ~~sGSeAvEtAlKma~qY~~~~--G~-----------------p~--r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~  169 (449)
T COG0161         111 TDSGSEAVETALKMALQYWRAR--GQ-----------------PQ--RKKFISRRNGYHGDTLGAMSVGGPVALRHAFYD  169 (449)
T ss_pred             eCCchHHHHHHHHHHHHHHHhc--CC-----------------Cc--ceEEEEeccCcCcccchheeccCchhhhhhhcc
Confidence            5899999999999999999887  65                 33  8899999999999999999999965444 3343


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccC-CCCccCCHHHHHHHHHH
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSE-GGDNHGSNYFFQQLQKI  156 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~-gGv~~pp~~fl~~lr~l  156 (159)
                      +. ..+.++|.|. |+.+...  ...++. .+++++||++|.+++  +++|||||+|||+|. |||++||++||++||++
T Consensus       170 ~ll~~~~~~~~P~~y~~~~~~--~~~~~~-~~~a~~le~~i~~~g--~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~i  244 (449)
T COG0161         170 PLLPEVLHLPAPYAYRRGFFG--EGDEEF-AEAADELEALILEHG--PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREI  244 (449)
T ss_pred             ccccCceecCCCcccccCCCC--CChHHH-HHHHHHHHHHHHhcC--cccEEEEEecccccccCCcccCChHHHHHHHHH
Confidence            33 4566788875 3333211  111222 478999999999873  589999999997776 99999999999999999


Q ss_pred             hcC
Q psy4805         157 GKK  159 (159)
Q Consensus       157 c~~  159 (159)
                      |++
T Consensus       245 C~k  247 (449)
T COG0161         245 CDK  247 (449)
T ss_pred             HHH
Confidence            985

>KOG1405|consensus

Probab=99.98  E-value=4.4e-32  Score=217.04  Aligned_cols=158  Identities=74%  Similarity=1.242  Sum_probs=144.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +.|||.|||+|+|.|+.|++.+.|| ...++.+|.+|-|++..||.+.--|++|+|+|||+|++++|.|.+...++...|
T Consensus       146 m~cGs~aNEnA~K~afiwy~~k~rg-~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiP  224 (484)
T KOG1405|consen  146 MLCGSCANENAYKTAFIWYRAKERG-QAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIP  224 (484)
T ss_pred             HhccccccHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCC
Confidence            4689999999999999999998888 579999999999999999988899999999999999999999998888888888


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .++|+..++|.|++|......+|...++.|++++|++|..+.+....|||+|+||||++||-...+++||++||.+|++
T Consensus       225 aFdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~K  303 (484)
T KOG1405|consen  225 AFDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKK  303 (484)
T ss_pred             CCCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHh
Confidence            8899999999999998665556667788999999999999876556899999999999999999999999999999975

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.98  E-value=9.2e-32  Score=226.66  Aligned_cols=156  Identities=64%  Similarity=1.033  Sum_probs=113.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+||||||.|+..++|+..+++|..+.++-|+.+.||..|.+||+|++||||+|++++++++.+.++....+
T Consensus       128 ~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~  207 (464)
T TIGR00699       128 GMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIP  207 (464)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCC
Confidence            58999999999999999986542221122233333455666667733569999999999999999999987544433333


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..++.++|+|.+++|.......++.+...++++++++|+++   .++|||||+|||||++|+++||++||++|++||++
T Consensus       208 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~  283 (464)
T TIGR00699       208 AFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKK  283 (464)
T ss_pred             CCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            34556677776544432111122344556788899999764   46899999999999999999999999999999985

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05965 hypothetical protein; Provisional

Probab=99.97  E-value=2.3e-30  Score=218.37  Aligned_cols=133  Identities=18%  Similarity=0.253  Sum_probs=103.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||.|++.+  |.                 |+  |.+||+|++||||+|.+++++|+.+.++..+.+
T Consensus       113 ~~sGSEAve~AlKlAr~~~~~~--g~-----------------~~--r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~  171 (459)
T PRK05965        113 TLGGSDAVDSAVRFIRHYWNAT--GR-----------------PS--KKQFISLERGYHGSSSVGAGLTALPAFHRGFDL  171 (459)
T ss_pred             eCChhHHHHHHHHHHHHHHHhc--CC-----------------CC--ccEEEEecCCcCcccHHHHHhcCCchhhcccCC
Confidence            5899999999999999998654  43                 34  889999999999999999999987655555544


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .. .+.++|+|. +++++...   .+.+...|+++++++|+++.  +++|||||+|||||+||+++||++||++||+||+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~--~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~  246 (459)
T PRK05965        172 PLPWQHKIPSPYPYRNPVGDD---PQAIIAASVAALRAKVAELG--ADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACR  246 (459)
T ss_pred             CCCCCEEcCCCcccccccCCC---hHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccCCCCccCCHHHHHHHHHHHH
Confidence            32 334556553 44443211   12345567888999887642  4789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       247 ~  247 (459)
T PRK05965        247 E  247 (459)
T ss_pred             H
Confidence            5

>PRK07482 hypothetical protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=217.41  Aligned_cols=134  Identities=22%  Similarity=0.254  Sum_probs=103.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+||||||.|+..+  |.                 |+  |++||+|+++|||+|++++++++...++..+.+
T Consensus       117 ~~sGSEAve~AlKlAr~~~~~~--g~-----------------~~--r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~  175 (461)
T PRK07482        117 GLSGSDANETQIKLVWYYNNVL--GR-----------------PE--KKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDL  175 (461)
T ss_pred             eCchHHHHHHHHHHHHHHHHhc--CC-----------------CC--CceEEEecCccCCccHhhhhccCCchhhhccCC
Confidence            5899999999999999998654  32                 35  899999999999999999999997766655554


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .. ++.++|+|. ++++....  ..+.+...++++++++|++.  .+++|||||+|||||+||+++||++||++||+||+
T Consensus       176 ~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~  251 (461)
T PRK07482        176 PIARVLHTEAPHYYRRADAGM--SEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK  251 (461)
T ss_pred             CCCCCEEcCCCccccccccCC--CHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence            42 445566664 23322110  11334456788899888643  24789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       252 ~  252 (461)
T PRK07482        252 K  252 (461)
T ss_pred             H
Confidence            5

>PRK07678 aminotransferase; Validated

Probab=99.97  E-value=4.7e-30  Score=216.08  Aligned_cols=133  Identities=25%  Similarity=0.376  Sum_probs=103.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.||||||.|++.+  |.                 ++  |++||+|+++|||+|++++++++...++..+.|
T Consensus       111 ~~sGseA~e~AlklAr~~t~~~--g~-----------------~~--r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~  169 (451)
T PRK07678        111 SNSGSEANETAFKIARQYHAQK--GE-----------------PH--RYKFISRYRAYHGNSMGALAATGQAQRKYKYEP  169 (451)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCCccHHHhhcCCCcccccccCC
Confidence            5899999999999999998664  43                 35  889999999999999999999987655555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|.|+ +++|+...   .+.++..++++++++|+..  .+++|||||+|||||++|+++||++||++||++|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~  244 (451)
T PRK07678        170 LAPGFLHVPPPDCYRMPGIES---EDIYDLECVKEIDRVMTWE--LSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQ  244 (451)
T ss_pred             CCCCCEEeCCCccccccccCC---hHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence            3 3455567665 44443211   1234556678888888743  25789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       245 ~  245 (451)
T PRK07678        245 K  245 (451)
T ss_pred             H
Confidence            5

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=4.5e-30  Score=217.11  Aligned_cols=132  Identities=17%  Similarity=0.346  Sum_probs=103.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||+|++.+  |+                 |+  |.+||+|+++|||+|++++++++.+.++..+.|
T Consensus       135 ~~sGSEAvE~AlKlAr~~~~~~--g~-----------------~~--r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p  193 (472)
T PRK08742        135 ADNGSAGVEVALKMAFHYFHNR--GE-----------------HR--RTRFIALENGYHGETIGALAVGDIPLYRRVYAP  193 (472)
T ss_pred             eCCchHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCCCchhhhhccCCcccccccCC
Confidence            5899999999999999998664  43                 35  889999999999999999999987666665655


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .. ++.++|+|+ ++++....   .+.+...+++.++++|+..   +++|||||+|| |||+||+++||++||++||+||
T Consensus       194 ~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~---~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc  267 (472)
T PRK08742        194 LLLESLFAPSPDAYLAEPGQS---AEDYALQAADALQALFEQS---PGEICALILEPRLQCAGGMRMHHPAYLRRARELC  267 (472)
T ss_pred             CCCCCEEeCCCCccccccCCC---HHHHHHHHHHHHHHHHHhC---CCceEEEEEccccccCCCcccCCHHHHHHHHHHH
Confidence            43 456677775 33332211   1223345678888888753   57999999999 7999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       268 ~~  269 (472)
T PRK08742        268 DA  269 (472)
T ss_pred             HH
Confidence            85

>PRK07481 hypothetical protein; Provisional

Probab=99.97  E-value=5.9e-30  Score=215.37  Aligned_cols=134  Identities=22%  Similarity=0.317  Sum_probs=103.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||+|++++  |.                 ++  |.+||+|+++|||+|++++++++...++..+.|
T Consensus       110 ~~sGsEAve~AlklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~  168 (449)
T PRK07481        110 SSGGSDSVETALKLARQYWKVR--GQ-----------------PE--RTKFISLKQGYHGTHFGGASVNGNTVFRRNYEP  168 (449)
T ss_pred             cCchHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCCcchhhhccCCCcccccccCC
Confidence            5899999999999999998665  43                 35  889999999999999999999987655555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|.|. +++|+...  ..+.+...+++.++++|...  .+++|||||+|||||+||+++||++||++||++|+
T Consensus       169 ~~~g~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~le~~i~~~--~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~  244 (449)
T PRK07481        169 LLPGCFHVETPWLYRNPFTEQ--DPEELARICARLLEREIAFQ--GPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCD  244 (449)
T ss_pred             CCCCCEEeCCCcccccccCCC--CHHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHH
Confidence            3 3455566664 44444210  01334456677888888643  25789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       245 ~  245 (449)
T PRK07481        245 R  245 (449)
T ss_pred             H
Confidence            5

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=8.3e-30  Score=215.01  Aligned_cols=132  Identities=27%  Similarity=0.463  Sum_probs=104.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+||||||.|+..+  |.                 ||  |++||+|+++|||+|++++++++...++..+.|
T Consensus       122 ~~SGseAve~AlklAr~~~~~~--g~-----------------tg--r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  180 (460)
T PRK06916        122 SDSGATAVEIAIKMAFQYWQNK--GK-----------------PK--KQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSS  180 (460)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCcCCcccHHhHhccCCcccccccCC
Confidence            5899999999999999998654  43                 45  899999999999999999999997766666655


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .. +...+|+|+ ++++....   .+.+...+++.++++|++.   +++|||||+|| |||+||+++||++||++||++|
T Consensus       181 ~~~~~~~~p~p~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~---~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc  254 (460)
T PRK06916        181 LLFEAIKMPYPYTYRSPYGND---KAEIVKKHLEELEELLKEK---HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLC  254 (460)
T ss_pred             CCCCCEEeCCCcccccccCCC---hHHHHHHHHHHHHHHHHhC---CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHH
Confidence            43 455677764 44443211   1234455688888888754   57999999999 7999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       255 ~~  256 (460)
T PRK06916        255 TK  256 (460)
T ss_pred             HH
Confidence            85

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=8.2e-30  Score=214.68  Aligned_cols=132  Identities=20%  Similarity=0.323  Sum_probs=104.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||+|+..+  |.                 |+  |.+||+|+++|||+|++++++++...++..|.|
T Consensus       120 ~~sGseAve~AlKlA~~~~~~r--g~-----------------~~--r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~  178 (453)
T PRK06943        120 ASDGASAVEIALKMSFHAWRNR--GR-----------------GD--KREFVCLANGYHGETIGALGVTDVALFKDAYDP  178 (453)
T ss_pred             eCCCHHHHHHHHHHHHHHHHHh--CC-----------------CC--CCEEEEECCCcCCCcHHhhcccCChhhhccccc
Confidence            5899999999999999998654  42                 35  889999999999999999999997766666665


Q ss_pred             CC-CCCcccCCCC-CCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPKY-KYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~~-~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+ +..++|+|+. +++...   ..+.+...+++.++++|+.+   +++|||||+|| |||+||+++||++||++||++|
T Consensus       179 ~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~---~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc  252 (453)
T PRK06943        179 LIRHAHVVASPDARGARPGE---TAADVAARALADVRRLFAER---AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALC  252 (453)
T ss_pred             CCCCCEEECCCCccccccCC---CHHHHHHHHHHHHHHHHHhC---CCceEEEEEeccccccCCcccCCHHHHHHHHHHH
Confidence            43 4455777753 222221   12334456788888888754   57999999999 5999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       253 ~~  254 (453)
T PRK06943        253 DR  254 (453)
T ss_pred             HH
Confidence            85

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.96  E-value=1.3e-29  Score=214.03  Aligned_cols=132  Identities=23%  Similarity=0.376  Sum_probs=104.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||.|+..+  |.                 |+  |.+||+|+++|||+|.+++++++...++..+.|
T Consensus       113 ~~sGsEAve~AlKlAr~~~~~~--g~-----------------t~--r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p  171 (466)
T PRK07030        113 ADNGSSAIEVALKMSFHYWRNR--GK-----------------PR--KKRFVTLTNSYHGETLAAMSVGDVALFTETYKP  171 (466)
T ss_pred             eCCcHHHHHHHHHHHHHHHHHh--CC-----------------CC--CcEEEEECCCcCcccHHHHhccCCccccccCCc
Confidence            5899999999999999998655  42                 35  889999999999999999999997666665655


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+ ++.++|+|. ++++....   .+.+...+++.++++|.+.   +++|||||+|| |||+||+++||++||++||++|
T Consensus       172 ~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~l~~le~~~~~~---~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc  245 (466)
T PRK07030        172 LLLDTIKVPSPDCYLRPEGMS---WEEHSRRMFAHMEQTLAEH---HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREAC  245 (466)
T ss_pred             cCCCCEEcCCCCccccccCCC---HHHHHHHHHHHHHHHHHhC---CCceEEEEEecccccCCCcccCCHHHHHHHHHHH
Confidence            43 555677775 33333211   2334456688888888754   57999999999 7999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       246 ~~  247 (466)
T PRK07030        246 DR  247 (466)
T ss_pred             HH
Confidence            85

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.96  E-value=1.5e-29  Score=213.68  Aligned_cols=128  Identities=23%  Similarity=0.287  Sum_probs=100.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ||||||||.||||||.|+                         |  |++||+|+++|||+|.+++++++...++..+.+.
T Consensus       134 ~SGSEAve~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~  186 (464)
T PRK06938        134 PTGTDAVEAALKLVKTAT-------------------------G--RSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGAL  186 (464)
T ss_pred             CCcHHHHHHHHHHHHHhh-------------------------C--CCeEEEECCccCCccHHHHhhcCCccccccCCCC
Confidence            799999999999999984                         5  8899999999999999999999876555544443


Q ss_pred             -CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 -FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 -~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                       .++.++|+|. +++++...   .+.+...+++.++++|+....+.++|||||+|||||+||+++||++||++||++|++
T Consensus       187 ~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~  263 (464)
T PRK06938        187 LPGVQFLPYPYDYRCPFGLG---GEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEE  263 (464)
T ss_pred             CCCcEEeCCCccccccccCc---hhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence             2455677774 44554211   233445678889988875422235899999999999999999999999999999985

>PRK07483 hypothetical protein; Provisional

Probab=99.96  E-value=4.4e-29  Score=209.75  Aligned_cols=134  Identities=19%  Similarity=0.267  Sum_probs=101.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||.|++.+  |.                 |+  |.+||+|+++|||+|++++++++...++..+.|
T Consensus        96 ~~sGsEAve~AlklAr~~~~~~--g~-----------------~~--r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p  154 (443)
T PRK07483         96 VSGGSEAVEAALKLARQYFVEI--GQ-----------------PQ--RRHFIARRQSYHGNTLGALAIGGNAWRREPFAP  154 (443)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCCcCHHHhhhcCCcccccccCC
Confidence            5899999999999999998654  42                 45  889999999999999999999987655555554


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccccc-CCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQS-EGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG-~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+ ++.++|.|. |+++....  ..+.+...+++++++++...  .+++|||||+||||| +||+++||++||++||++|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc  230 (443)
T PRK07483        155 LLIEAHHVSPCYAYREQRAGE--SDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVC  230 (443)
T ss_pred             CCCCCEEeCCCccccccccCC--CHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHH
Confidence            32 444555552 44332110  12334556778888877643  247899999999999 5899999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       231 ~~  232 (443)
T PRK07483        231 DR  232 (443)
T ss_pred             HH
Confidence            86

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.96  E-value=4.2e-29  Score=210.69  Aligned_cols=129  Identities=24%  Similarity=0.326  Sum_probs=97.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.||||||.|+                         |  |.+||+|+++|||+|.++++++++..++..+.+
T Consensus       127 ~~SGsEAve~AlklAr~~t-------------------------g--r~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~  179 (459)
T PRK06931        127 GPSGADAVEAAIKLAKTYT-------------------------G--RSNVISFSGGYHGMTHGALAVTGNLSPKNAVNG  179 (459)
T ss_pred             CCCcHHHHHHHHHHHHHhc-------------------------C--CCeEEEECCCcCCccHHHHhhcCCcccccCCCC
Confidence            3899999999999999984                         5  889999999999999999999987655555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|+|+ +++|+...   .+.+.+.+.+.+++.++.....+++|||||+|||||+||+++||++||++||++|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~  256 (459)
T PRK06931        180 LMPGVQFMPYPHEYRCPLGIG---GEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQ  256 (459)
T ss_pred             CCCCcEEeCCCccccccccCC---chhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence            3 3556677775 55554311   11122333444555554321124689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       257 ~  257 (459)
T PRK06931        257 K  257 (459)
T ss_pred             H
Confidence            5

>PRK07036 hypothetical protein; Provisional

Probab=99.96  E-value=5.7e-29  Score=210.21  Aligned_cols=133  Identities=22%  Similarity=0.243  Sum_probs=102.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.||||||.|+..+  |.                 |+  |++||+|+++|||+|++++++++...++..|.+
T Consensus       118 ~~sGseAve~AlklAr~~~~~~--g~-----------------t~--r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~  176 (466)
T PRK07036        118 TTGGSTAVDSALRFVHYYFNVR--GR-----------------PA--KKHIITRGDAYHGSTYLTASLTGKAADRTEFDY  176 (466)
T ss_pred             eCCchHHHHHHHHHHHHHHHhc--CC-----------------CC--ccEEEEEcCccCCccHhhhcccCCCcccccccC
Confidence            5899999999999999997654  42                 34  889999999999999999999997766655554


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .. .+.++|.|. +++|....   .+.+...+++.+++.+...  .+++|||||+|||||++|+++||++||++||++|+
T Consensus       177 ~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~--~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~  251 (466)
T PRK07036        177 ASDLVHHLSSPNPYRRPAGMS---EAAFCDFLVDEFEDKILSL--GADNIAAFIAEPILGSGGVIVPPPGYHARMREICR  251 (466)
T ss_pred             CCCCcEEecCCcccccccCCC---hHHHHHHHHHHHHHHHHHc--CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence            32 445566664 34443211   1223445667777777643  25799999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       252 ~  252 (466)
T PRK07036        252 R  252 (466)
T ss_pred             H
Confidence            5

>KOG1401|consensus

Probab=99.96  E-value=2.5e-29  Score=203.98  Aligned_cols=117  Identities=27%  Similarity=0.332  Sum_probs=93.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.||||||+++..+. +                  .+  +++||+|+|||||+|+++|+++++..++..+.|
T Consensus       122 ~nsGTeAne~ALK~Ark~~~~~~-~------------------~~--~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p  180 (433)
T KOG1401|consen  122 CNSGTEANETALKFARKFTGKKH-P------------------EK--KTKFIAFENSYHGRTLGALSVTGNSKYGLPFDP  180 (433)
T ss_pred             ecCCcHHHHHHHHHHHHhhcccC-C------------------cc--ceeEEEEecCcCCcchhHHHhhcccccCCCCCC
Confidence            69999999999999999974331 1                  22  679999999999999999999987665543333


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .       .|++.     ...|+|      ..+++++|+.+   .++|||||+|||||+||++++.|+||+.||++|++
T Consensus       181 ~-------~p~v~-----~~~ynd------~t~l~k~~~~h---~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~  238 (433)
T KOG1401|consen  181 I-------APDVV-----TAEYND------STALEKLFESH---KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDD  238 (433)
T ss_pred             C-------CCcee-----ecccCC------HHHHHHHHHhC---CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhh
Confidence            1       12211     112455      78889999986   56899999999999999999999999999999985

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.96  E-value=8e-29  Score=207.53  Aligned_cols=139  Identities=32%  Similarity=0.528  Sum_probs=98.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhh--cCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNK--QRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~   78 (159)
                      +||||||||+|||+||+|+.++  .+|.                 +...|++||+|+++|||+|++++++++...++..+
T Consensus       109 ~~sGsEAve~AlklAr~~t~~~~~~~g~-----------------~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~  171 (431)
T TIGR03251       109 IEGGALAVENALKTAFDWKSRHNQARGI-----------------PAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTAR  171 (431)
T ss_pred             eCCcHHHHHHHHHHHHHHhhcchhhcCC-----------------CCCCCceEEEECCccCCcchhhhhccCCccccccC
Confidence            5899999999999999997431  1121                 11016789999999999999999999865444444


Q ss_pred             CCCCCCCcccCCCCCCCCccch-hhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          79 IPAFDWPIASFPKYKYPLEENE-RENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+..++.+++.|..++|+.... ...+.+...++++++++++..   +++|||||+|||||++|+++||++||++|++||
T Consensus       172 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc  248 (431)
T TIGR03251       172 FPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAER---PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALC  248 (431)
T ss_pred             CCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhC---CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHH
Confidence            4433333344443333331100 001223445688888888764   579999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       249 ~~  250 (431)
T TIGR03251       249 DE  250 (431)
T ss_pred             HH
Confidence            85

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.96  E-value=8.7e-29  Score=207.97  Aligned_cols=139  Identities=33%  Similarity=0.531  Sum_probs=97.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhc--CCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQ--RGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~   78 (159)
                      +||||||||+||||||+|++++.  +|.+               .++  |++||+|+++|||+|++++++++....+..+
T Consensus       116 ~~SGsEAve~AlKlAr~~~~~~~~~~g~~---------------~~~--r~kii~~~~~yHG~t~~als~~~~~~~~~~~  178 (443)
T PRK08297        116 VDGGALAVENALKVAFDWKSRKNEARGID---------------PAL--GTKVLHLRGAFHGRSGYTLSLTNTDPRKTAR  178 (443)
T ss_pred             eCchHHHHHHHHHHHHHHhhccccccCCC---------------CCC--CceEEEECCCcCCcchhhhhhcCCccccccc
Confidence            58999999999999999975321  1210               013  7899999999999999999999864333322


Q ss_pred             CCCCCCCcccCCCCCCCCccc-hhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          79 IPAFDWPIASFPKYKYPLEEN-ERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~-~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+...+.++|.|...+|+... ....+.+...++++++++|+++   +++|||||+|||||++|+++||++||++||+||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc  255 (443)
T PRK08297        179 FPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERH---PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELC  255 (443)
T ss_pred             CCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            232222334444322222110 0001223445678888888864   579999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       256 ~~  257 (443)
T PRK08297        256 DE  257 (443)
T ss_pred             HH
Confidence            86

>PRK07480 putative aminotransferase; Validated

Probab=99.96  E-value=7.5e-29  Score=209.02  Aligned_cols=133  Identities=23%  Similarity=0.275  Sum_probs=99.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||.|++.+  |.                 ++  |.+||+|+++|||+|++++++++...++..+.+
T Consensus       117 ~~SGseA~e~AlklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~  175 (456)
T PRK07480        117 TNSGSEANDTVLRMVRHYWALK--GK-----------------PQ--KKVIISRKNGYHGSTVAGASLGGMKYMHEQGDL  175 (456)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCCcchhhhhccCChhhhcccCC
Confidence            5899999999999999998664  42                 35  889999999999999999999987554444333


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|+|. ++++....   .+.+...+++++++.+...  .+++|||||+|||||+||+++||++||++||+||+
T Consensus       176 ~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~--~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~  250 (456)
T PRK07480        176 PIPGIVHIDQPYWFGEGGDMT---PEEFGLAAARQLEAKILEL--GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICR  250 (456)
T ss_pred             CCCCCeecCCCcccccccCCC---hHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            2 2445566664 34332111   1223344567777666543  25799999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       251 ~  251 (456)
T PRK07480        251 K  251 (456)
T ss_pred             H
Confidence            5

>PRK06917 hypothetical protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=206.93  Aligned_cols=133  Identities=26%  Similarity=0.410  Sum_probs=101.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||+|++.+  |.                 |+  |.+||+|+++|||+|.+++++++...++..+.+
T Consensus        97 ~~sGsEAve~AlklAr~~~~~r--g~-----------------t~--r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~  155 (447)
T PRK06917         97 VNSGSEANETAMKIAIQHFQER--GI-----------------QG--KHKILSRWMSYHGITMGALSMSGHPLRRQRFVS  155 (447)
T ss_pred             eCChHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEECCCcCCccHHHHHhcCCccccccCCC
Confidence            5899999999999999998655  43                 45  899999999999999999999987655554544


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccccc-CCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQS-EGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG-~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+ ++..+|.|. +++|....   .+.+...+++.++++|+.+.  .++|||||+||||| .||+++||++||++||++|
T Consensus       156 ~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~le~~i~~~~--~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc  230 (447)
T PRK06917        156 LLEDYPTISAPYCYRCPVQKV---YPTCQLACATELETAIERIG--AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEIC  230 (447)
T ss_pred             CCCCCeEeCCCcccccccCCC---hHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccCcCceecCCHHHHHHHHHHH
Confidence            32 344455553 33333211   13344556788888887642  35899999999999 5789999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       231 ~~  232 (447)
T PRK06917        231 DH  232 (447)
T ss_pred             HH
Confidence            85

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.96  E-value=1.7e-28  Score=205.53  Aligned_cols=127  Identities=20%  Similarity=0.332  Sum_probs=98.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCC-ccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHS-KYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~-~~~~~~~~   79 (159)
                      ++|||||||+||||||.|++.+  |.                 |+  |.+||+|+++|||+|.+++++++. ..++..+.
T Consensus       110 ~~sGseAve~AlklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  168 (429)
T PRK06173        110 ADSGSVAVEVAMKMALQYQQAK--GE-----------------VQ--RTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFN  168 (429)
T ss_pred             eCCchHHHHHHHHHHHHHHHHh--CC-----------------CC--CcEEEEECCCcCCcchhhhccCCCchhhhhccc
Confidence            5899999999999999998655  43                 45  889999999999999999999875 33444444


Q ss_pred             CCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +.. .+.++|+|....        .+.+...+++.++++|+..   +++|||||+||| ||+||+++||++||++|++||
T Consensus       169 ~~~~~~~~~~~p~~~~--------~~~~~~~~l~~l~~~i~~~---~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc  237 (429)
T PRK06173        169 HSLPVQYFLPQPSIKF--------GEEWNDEAIEPLQDLLEQK---GDEIAALILEPVVQGAGGMYFYSPTYLVKARELC  237 (429)
T ss_pred             ccCCCCeEeCCCCccc--------chhHHHHHHHHHHHHHHhC---CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHH
Confidence            432 344566653211        1223445688888888754   578999999997 999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       238 ~~  239 (429)
T PRK06173        238 DQ  239 (429)
T ss_pred             HH
Confidence            85

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.96  E-value=2.1e-28  Score=206.35  Aligned_cols=132  Identities=26%  Similarity=0.297  Sum_probs=98.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      +||||||||+||||||.|+                         |  |.+||+|+++|||+|++++++++.. .++..+.
T Consensus       119 ~~SGsEA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  171 (457)
T PRK05639        119 GLSGSDAVDMAIKVSKFST-------------------------R--RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFS  171 (457)
T ss_pred             eCchHHHHHHHHHHHHHhc-------------------------C--CCeEEEECCCcCCccHHHHHHcCCCcccccCCC
Confidence            5899999999999999984                         4  7899999999999999999998753 3344454


Q ss_pred             CC-CCCCcccCCC-CCCCCccch-hhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHH
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENE-RENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI  156 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~l  156 (159)
                      |. .++.++|+|+ +++|+.... ...+.+.+.+++.+++.+......+++|||||+|||||+||+++||++||++|+++
T Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~l  251 (457)
T PRK05639        172 PLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKL  251 (457)
T ss_pred             CCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            43 2455677774 343332100 00133445667778877654211257899999999999999999999999999999


Q ss_pred             hcC
Q psy4805         157 GKK  159 (159)
Q Consensus       157 c~~  159 (159)
                      |++
T Consensus       252 c~~  254 (457)
T PRK05639        252 LDE  254 (457)
T ss_pred             HHH
Confidence            985

>PRK06105 aminotransferase; Provisional

Probab=99.96  E-value=3e-28  Score=205.57  Aligned_cols=134  Identities=22%  Similarity=0.294  Sum_probs=102.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||.|++.+  |.                 |+  |.+||+|+++|||+|++++++++...++..+.+
T Consensus       115 ~~SGseAve~AlKlar~~~~~~--g~-----------------t~--r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~  173 (460)
T PRK06105        115 TNSGSEANDTVVKLVWYYNNAL--GR-----------------PE--KKKIISRQRGYHGVTIASASLTGLPNNHRSFDL  173 (460)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEecCccCCcchhheeccCCcccccccCC
Confidence            5899999999999999987654  32                 35  899999999999999999999987655555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|+|+ +++.....  ..+.+...++++++++|...  .+++|||||+|||||++|+++||++||++||+||+
T Consensus       174 ~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~  249 (460)
T PRK06105        174 PLDRILHTGCPHYYRFGLPGE--SEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLR  249 (460)
T ss_pred             CCCCCEEcCCCcccccccCCC--ChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            3 3455677775 23221110  11334455678888888643  24689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       250 ~  250 (460)
T PRK06105        250 K  250 (460)
T ss_pred             H
Confidence            5

>KOG1404|consensus

Probab=99.96  E-value=2.1e-28  Score=197.71  Aligned_cols=128  Identities=25%  Similarity=0.262  Sum_probs=102.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+||||||.||                         +  +.+||+++++|||.|..++++|+...++..+..
T Consensus       115 ~nsGsEANelal~mar~Yt-------------------------~--~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~  167 (442)
T KOG1404|consen  115 VNSGSEANELALKMARLYT-------------------------G--NLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPG  167 (442)
T ss_pred             ecCCchHHHHHHHHHHHhc-------------------------C--CceEEEeeccccCCchhhcccccCCcccccCCC
Confidence            5899999999999999996                         4  779999999999999999999998766544432


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.+.+.|+ ++.+++...  ..+..+++.++++++|...  .+..|||||+|||||.||++.+|++||++++++||
T Consensus       168 ~~~~~~~~~~Pdp~r~~~~~~~--~~e~~d~~a~~l~d~i~~~--~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~  243 (442)
T KOG1404|consen  168 VASGVHHTMNPDPYRGIFGGSN--EEEASDRYAKELEDLILYD--GPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR  243 (442)
T ss_pred             CCCcccccCCCCcccccCCCCc--hhhhHHHHHHHHHHHHHhc--CCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence            2 3666677776 555554221  1233456778888888764  36789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       244 k  244 (442)
T KOG1404|consen  244 K  244 (442)
T ss_pred             H
Confidence            6

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.95  E-value=3.4e-28  Score=204.30  Aligned_cols=133  Identities=18%  Similarity=0.225  Sum_probs=102.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||.|+..+  |.                 ++  |.+||+|+++|||+|++++++++...++..+.+
T Consensus       112 ~~sGseA~e~AlklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~  170 (442)
T PRK13360        112 TNSGSESVDTALKIALAYHRAR--GE-----------------GS--RTRLIGRERGYHGVGFGGISVGGIVPNRKAFGA  170 (442)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEEcCCcCCccHhhhhccCChhhhhccCC
Confidence            5899999999999999997554  32                 23  789999999999999999999997766655544


Q ss_pred             CC-CCCcccCCC--CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPK--YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~--~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .. .+.++|++.  +++++...   ...+...+++++++++...  .++++||||+|||||++|+++||++||++||+||
T Consensus       171 ~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc  245 (442)
T PRK13360        171 LLPGVDHLPHTLDLARNAFSKG---QPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREIC  245 (442)
T ss_pred             CCCCCEEeCCCchhhccccCCC---hHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            32 445566652  33333211   1234455678888888754  2468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       246 ~~  247 (442)
T PRK13360        246 DK  247 (442)
T ss_pred             HH
Confidence            85

>PRK06541 hypothetical protein; Provisional

Probab=99.95  E-value=5.8e-28  Score=203.80  Aligned_cols=133  Identities=24%  Similarity=0.305  Sum_probs=104.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||.|++.+  |.                 ++  |.+||+|+++|||+|++++++++.+.++..+.|
T Consensus       118 ~~sGseAve~AlklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  176 (460)
T PRK06541        118 TTGGSEAVESAWKLAKQYFKLT--GK-----------------PG--KHKVISRAIAYHGTTQGALAITGLPAFKAPFEP  176 (460)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--ccEEEEEcCcccCcchhhhcCcCChhhccccCC
Confidence            5899999999999999997644  32                 34  889999999999999999999987655555544


Q ss_pred             C-CCCCcccCCC-CCCC-CccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          81 A-FDWPIASFPK-YKYP-LEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~-~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      . .++.++|+|+ +++| +..   ..+.+...|++.++++++..  .++++||||+|||||.+|+++||++||++|++||
T Consensus       177 ~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc  251 (460)
T PRK06541        177 LVPGGFRVPNTNFYRAPELGD---DPEAFGRWAADRIEEAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREIC  251 (460)
T ss_pred             CCCCcEEeCCCccccccccCC---CHHHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence            3 3556677775 4444 211   01234556788899888753  2468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       252 ~~  253 (460)
T PRK06541        252 DR  253 (460)
T ss_pred             HH
Confidence            85

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.95  E-value=5.3e-28  Score=203.33  Aligned_cols=133  Identities=17%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||.|+..+  |.                 ++  |.+||+|+++|||+|++++++++...++..+.+
T Consensus       115 ~~sGseAve~AlklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~  173 (445)
T PRK09221        115 TNSGSESVDTALKIALAYHRAR--GQ-----------------GT--RTRLIGRERGYHGVGFGGISVGGIVNNRKMFGG  173 (445)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCccchhhhccCCChhhhhccCC
Confidence            5899999999999999998654  32                 23  789999999999999999999987655555544


Q ss_pred             CC-CCCcccCCC--CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AF-DWPIASFPK--YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~-~~~~~p~p~--~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .. +..++|+|.  +++++...   ...+...++++++++++..  +.++|||||+|||||++|+++||++||++|+++|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc  248 (445)
T PRK09221        174 LLPGVDHLPHTLDLPENAFSKG---QPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREIC  248 (445)
T ss_pred             CCCCCeEeCCCccccccccCCC---hHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence            32 344556552  22222211   1233445677888888764  2368999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       249 ~~  250 (445)
T PRK09221        249 DK  250 (445)
T ss_pred             HH
Confidence            85

>PRK06062 hypothetical protein; Provisional

Probab=99.95  E-value=5.2e-28  Score=203.69  Aligned_cols=127  Identities=18%  Similarity=0.183  Sum_probs=96.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||.|+                         |  |++||+|+++|||+|.+++++++.+.++.. .+
T Consensus       118 ~~SGsEAve~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~als~~~~~~~~~~-~~  169 (451)
T PRK06062        118 TNGGADANEHAVRMARLHT-------------------------G--RPKVLSAYRSYHGGTGSAINLTGDPRRWPN-DT  169 (451)
T ss_pred             cCChHHHHHHHHHHHHHhh-------------------------C--CceEEEEeCCCCCCCHHHHhhcCCcccccC-CC
Confidence            5899999999999999994                         4  789999999999999999999986543322 22


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++..++.|. +++++...  .++.+...+++.++++|+..  ++++|||||+|||||++|+++||++||++||+||+
T Consensus       170 ~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~  245 (451)
T PRK06062        170 GRAGVVHFFGPFLYRSEFHAT--TEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCD  245 (451)
T ss_pred             CCCCCEEeCCCCccccccCCC--ChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence            2 2334455553 34433110  12334556788899988653  24789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       246 ~  246 (451)
T PRK06062        246 R  246 (451)
T ss_pred             H
Confidence            5

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.95  E-value=6.5e-28  Score=201.68  Aligned_cols=121  Identities=28%  Similarity=0.298  Sum_probs=94.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.|||+||+|+                         |  |.+||+|+++|||+|++++++|++..++..+.+
T Consensus       109 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~  161 (425)
T PRK09264        109 GPTGTNAVEAALKLARKVT-------------------------G--RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGV  161 (425)
T ss_pred             CCCHHHHHHHHHHHHHHhc-------------------------C--CCeEEEECCccCCccHHHHHhcCCcccccCCCC
Confidence            3799999999999999983                         4  789999999999999999999987655544443


Q ss_pred             C-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 A-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      . .++.++|+|.+...           ...++++++++|+++..+.++|||||+|||||++|++++|++||++|+++|++
T Consensus       162 ~~~~~~~~p~~~~~~~-----------~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~  230 (425)
T PRK09264        162 PLNNVTRMPYDGYFGG-----------DVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRK  230 (425)
T ss_pred             CCCCeEEeCCCCcccc-----------chhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence            2 24555666642110           01236778888876432235899999999999999999999999999999985

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.95  E-value=8.3e-28  Score=201.88  Aligned_cols=116  Identities=27%  Similarity=0.428  Sum_probs=88.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+||||||.|+..                      +|  |.+||+|+++|||+|.+++++|+...++..+.|
T Consensus       140 ~~SGsEA~e~AlklAr~~t~~----------------------~g--r~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p  195 (442)
T TIGR03372       140 CNSGTESVEAALKLAKAYQSP----------------------RG--KFTFIAASGAFHGKSLGALSATAKPAFRKPFMP  195 (442)
T ss_pred             eCCchHHHHHHHHHHHHHHhh----------------------cC--CcEEEEECCCccCCCHHHhhccCCcccCCCCCC
Confidence            589999999999999999743                      24  789999999999999999999987655555544


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|+|             |      ++.+++.++.....+++|||||+|||||++|+++||++||++|+++|++
T Consensus       196 ~~~~~~~~p~~-------------d------~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~  256 (442)
T TIGR03372       196 LLPGFHHVAFG-------------D------IEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDE  256 (442)
T ss_pred             CCCCCEEeCCC-------------C------HHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHH
Confidence            32 23333333             2      2223333332111256899999999999999999999999999999985

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.95  E-value=2.5e-28  Score=198.89  Aligned_cols=127  Identities=31%  Similarity=0.493  Sum_probs=95.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||+|+..+  ..                 |+  |.+||+|+++|||+|++++++++++.++..+.+
T Consensus        82 ~~sGseAve~Alkla~~~~~~~--~~-----------------~~--r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~  140 (339)
T PF00202_consen   82 ANSGSEAVEAALKLARQYHNKR--AY-----------------TG--RRKILAFEGSYHGRTLGALSLTGNPPYRKGFGP  140 (339)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--HH-----------------HT--TTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCS
T ss_pred             ccCchHHHHHHHHHhhcccccc--cc-----------------cC--CceEEEeeeeeeccCcccccccCCccccccccc
Confidence            4899999999999999776554  11                 35  899999999999999999999988766665555


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +..++|+|+.         ..+.+...++..+++.+....  .++|||||+|||||++|++++|++||++||++|+|
T Consensus       141 ~~~~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~  209 (339)
T PF00202_consen  141 LYPGVVFVPFPDP---------AADEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCRE  209 (339)
T ss_dssp             SSTTEEEEETTCH---------HHHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHH
T ss_pred             cccccccccCCcc---------chhhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehcccccc
Confidence            43 3345566531         112334455666666655443  57999999999999999999999999999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.95  E-value=1.1e-27  Score=199.69  Aligned_cols=121  Identities=27%  Similarity=0.338  Sum_probs=94.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+|||+||.|+                         |  |.+||+|+++|||+|.+++++++...++..+.+
T Consensus       105 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~  157 (412)
T TIGR02407       105 GPTGTNAVESALKLARKVT-------------------------G--RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGV  157 (412)
T ss_pred             CCCchHHHHHHHHHHhhhc-------------------------C--CCeEEEECCCcCCchHHHHHhcCCcccccCCCC
Confidence            4899999999999999983                         4  789999999999999999999987655554443


Q ss_pred             C-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 A-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      . .++.++|+|++..+           ...+++.++++++++..+.+++||||+|||||++|+++||++||++|+++|++
T Consensus       158 ~~~~~~~~p~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~  226 (412)
T TIGR02407       158 PLSNVSRMPYDGYLGG-----------DVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRR  226 (412)
T ss_pred             CCCCeEECCCCCcccc-----------chhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHH
Confidence            2 24445565542210           12346778888876532336899999999999999999999999999999985

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.95  E-value=1.9e-27  Score=202.58  Aligned_cols=134  Identities=20%  Similarity=0.287  Sum_probs=100.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.|||+||.|++.+  |.                 ++  |.+||+|+++|||+|++++++++.+.++..+.+
T Consensus       157 ~~SGsEA~e~AlKlAr~~~~~~--g~-----------------~~--r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~  215 (504)
T PLN02760        157 TNSGSEANDTQVKLVWYYNNAL--GR-----------------PN--KKKFIARSKSYHGSTLISASLSGLPALHQKFDL  215 (504)
T ss_pred             eCChHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCccCChHhhhhccCChhhccCCCC
Confidence            5899999999999999997554  32                 34  889999999999999999999987655444433


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . ..+.++++|. ++++....  ..+.+...+++++++++...  .+++|||||+|||||++|+++||++||++||+||+
T Consensus       216 ~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~  291 (504)
T PLN02760        216 PAPFVLHTDCPHYWRFHLPGE--TEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLK  291 (504)
T ss_pred             CCCCcEEeCCCcccccCCCCC--cHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence            2 2344566664 33322111  11223345567788877543  24689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       292 ~  292 (504)
T PLN02760        292 K  292 (504)
T ss_pred             H
Confidence            5

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.95  E-value=1.3e-27  Score=201.54  Aligned_cols=116  Identities=27%  Similarity=0.466  Sum_probs=88.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.|||+||.|+.++                      |  |.+||+|+++|||+|.+++++++...++..+.|
T Consensus       147 ~~SGsEAve~AlklAr~~t~~~----------------------g--r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~  202 (459)
T PRK11522        147 CNSGTESVEAALKLAKAYQSPR----------------------G--KFTFIATSGAFHGKSLGALSATAKSTFRKPFMP  202 (459)
T ss_pred             eCCchHHHHHHHHHHHHHhccC----------------------C--CcEEEEecCCCCCCcHHHhhhcCCcccccCCCC
Confidence            5899999999999999997322                      4  789999999999999999999987655544444


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|+             +|      ++++++.++.....+++|||||+|||||++|+++||++||++|+++|++
T Consensus       203 ~~~~~~~~~~-------------~d------~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~  263 (459)
T PRK11522        203 LLPGFRHVPF-------------GN------IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDE  263 (459)
T ss_pred             CCCCCcccCC-------------CC------HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHH
Confidence            32 2222222             23      3445555543211246899999999999999999999999999999985

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.95  E-value=1.9e-27  Score=200.19  Aligned_cols=128  Identities=27%  Similarity=0.322  Sum_probs=96.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      +||||||||+||||||.|+                         |  |.+||+|+++|||+|.+++++++.. .++..+.
T Consensus       121 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~  173 (451)
T PRK06918        121 LNSGAEAVENAVKIARKYT-------------------------K--RQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFG  173 (451)
T ss_pred             cCCcHHHHHHHHHHHHHHh-------------------------C--CCcEEEECCCcCccchhhhhhcCCCccccccCC
Confidence            5899999999999999994                         4  7899999999999999999998853 3444444


Q ss_pred             CCC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PAF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +.. ++.++|+|+ +++|....   .+.+...+++.+++++.... .+++|||||+|||||+||+++||++||++|+++|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~  249 (451)
T PRK06918        174 PFAPEVYKAPFPYEYRRPEGLT---EEQYDDFMIEEFKNFFISEV-APETIAAVVMEPVQGEGGFIVPSKKFVQEVRNIC  249 (451)
T ss_pred             CCCCCcEEcCCCccccccccCc---hHHHHHHHHHHHHHHHHhhc-CCCceEEEEECcccCCCCCccCCHHHHHHHHHHH
Confidence            432 455567764 33332211   12334456677777664321 2468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       250 ~~  251 (451)
T PRK06918        250 SE  251 (451)
T ss_pred             HH
Confidence            85

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.95  E-value=2.3e-27  Score=199.30  Aligned_cols=129  Identities=23%  Similarity=0.382  Sum_probs=95.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.||||||.|+                         |  |.+||+|+++|||+|.+++++++...++..+.+
T Consensus       108 ~~sGsEA~e~AlklAr~~t-------------------------g--r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~  160 (442)
T TIGR00709       108 GPSGADAVEAAIKLAKTYT-------------------------G--RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGM  160 (442)
T ss_pred             CCCHHHHHHHHHHHHHHhc-------------------------C--CCeEEEEcCCcCCchHHHHhhcCChhhhccCCC
Confidence            4899999999999999993                         4  788999999999999999999986555554444


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|+|+ +++|+...   .+.+...+.+.+++.++......++|||||+|||||++|+++||++||++|+++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~  237 (442)
T TIGR00709       161 LMPGVQFMPYPHEYRCPFGIG---GEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTR  237 (442)
T ss_pred             CCCCcEEeCCCccccccccCC---chhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            3 2445566664 44444211   11222333445556554322224689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       238 ~  238 (442)
T TIGR00709       238 K  238 (442)
T ss_pred             H
Confidence            5

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.95  E-value=3e-27  Score=197.65  Aligned_cols=125  Identities=25%  Similarity=0.351  Sum_probs=95.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||+||||||+|++.+  |.                 ++  |.+||+|+++|||+|++++++++.. .++..|.
T Consensus       106 ~~SGseA~e~AlklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~  164 (422)
T PRK05630        106 SDSGSVSVEVAIKMALQYSKGQ--GH-----------------PE--RTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWK  164 (422)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCCccHHHhccCCCccccccccc
Confidence            5899999999999999998654  33                 34  8899999999999999999998753 3444444


Q ss_pred             CC-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. ..+.++|+|.++. .    .++  ....+++.+++++.      ++|||||+||| ||+||+++||++||++||+||
T Consensus       165 ~~~~~~~~~p~~~~~~-~----~~~--~~~~~~~~~~~~~~------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc  231 (422)
T PRK05630        165 GTLPEQIFAPAPPVRG-S----SPQ--EISEYLRSLELLID------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLC  231 (422)
T ss_pred             ccCCCCeEcCCCcccC-C----ChH--HHHHHHHHHHHHHh------hceEEEEEechhcCcCCcccCCHHHHHHHHHHH
Confidence            43 2445566664221 0    111  23346677777764      48999999996 999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       232 ~~  233 (422)
T PRK05630        232 DK  233 (422)
T ss_pred             HH
Confidence            85

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=4.1e-27  Score=197.93  Aligned_cols=128  Identities=30%  Similarity=0.408  Sum_probs=97.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcc-ccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKY-IHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~-~~~~~~   79 (159)
                      ++|||||||+|||+||.|+                         |  |++||+|+++|||+|++++++++... ++..+.
T Consensus       109 ~~SGseA~e~AiklAr~~t-------------------------g--r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  161 (445)
T PRK08593        109 GLSGSDANDGIIKFARAYT-------------------------G--RPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG  161 (445)
T ss_pred             CCchHHHHHHHHHHHHHhh-------------------------C--CCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence            5899999999999999994                         4  78999999999999999999998542 334444


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. .++.++|+|+ +++++..   .++.....++++++++++.+. .+++|||||+|||||++|+++||++||++|+++|
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc  237 (445)
T PRK08593        162 PLLPGFVHIPFPDKYRGMYEE---PDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFC  237 (445)
T ss_pred             CCCCCcEEeCCCccccccccC---CcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            43 3455677775 3433321   122334556777887776531 1368999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       238 ~~  239 (445)
T PRK08593        238 RE  239 (445)
T ss_pred             HH
Confidence            85

>KOG1402|consensus

Probab=99.95  E-value=1.2e-27  Score=190.17  Aligned_cols=118  Identities=25%  Similarity=0.274  Sum_probs=93.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ||+|.||+|.|+||||+|..+. ++.+                 . .+.+|++-.++|||+|++++|+|..+..+..|.|
T Consensus       122 mnTGaEa~Eta~KLaR~wgy~~-K~ip-----------------~-nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp  182 (427)
T KOG1402|consen  122 MNTGAEAVETACKLARKWGYRK-KNIP-----------------K-NKAKILSAENNFHGRTLGAISLSTDPDSWDGFGP  182 (427)
T ss_pred             cccchhHHHHHHHHHHHHHHhh-ccCC-----------------c-cceeEEEecccccCceeeeEEecCCcchhhccCC
Confidence            6899999999999999996554 2331                 1 2778999999999999999999987754555655


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++     |.- .     ...+|++      +++|+..|+.     +.|||||+|||||++||++||++||+++|+||++
T Consensus       183 ~~-----P~~-~-----~~v~Y~d------~eale~~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtk  239 (427)
T KOG1402|consen  183 FL-----PGV-V-----DKVPYGD------AEALEVALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTK  239 (427)
T ss_pred             CC-----CCc-c-----eeeccCC------HHHHHHHhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHh
Confidence            42     210 0     1123455      7788888874     6999999999999999999999999999999985

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.94  E-value=4.8e-27  Score=196.10  Aligned_cols=127  Identities=24%  Similarity=0.257  Sum_probs=93.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||+||||||.|+                         |  |.+||+|+++|||+|++++++++.. .++..+.
T Consensus       100 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~  152 (420)
T TIGR00700       100 FNSGAEAVENAVKIARSYT-------------------------G--RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFG  152 (420)
T ss_pred             eCCcHHHHHHHHHHHHHhc-------------------------C--CCcEEEECCCcCCCcHHHHHhcCCCcccccCCC
Confidence            5899999999999999993                         4  7789999999999999999998853 2344444


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. .+..++|+|. ++.+....    +.....+++.++++|.... .+++|||||+|||||++|+++||++|+++|+++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc  227 (420)
T TIGR00700       153 PFAPEVYRAPLPYPYRDGLLDK----QLSTDGELAAARAIFVIDV-GANNVAALVIEPVQGEGGFIVPAKGFVPALLDWC  227 (420)
T ss_pred             CCCCCcEEeCCCcccccccccc----chhHHHHHHHHHHHHHhhc-CCCcEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence            43 2344566663 33221100    1112245777777774211 2579999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       228 ~~  229 (420)
T TIGR00700       228 RE  229 (420)
T ss_pred             HH
Confidence            85

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK12403 putative aminotransferase; Provisional

Probab=99.94  E-value=1.1e-26  Score=196.10  Aligned_cols=132  Identities=23%  Similarity=0.300  Sum_probs=97.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||+|++.+  |.                 ++  |..||++.++|||+|++++++|+...++. +.+
T Consensus       121 ~~SGseA~e~AiklAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~~~~s~s~~~~~~~-~~~  178 (460)
T PRK12403        121 TNSGSEANEVLIRTVRRYWQVL--GK-----------------PQ--KKIMIGRWNGYHGSTLAATALGGMKFMHE-MGG  178 (460)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhh--CC-----------------CC--CcEEEEECCCcCcccHhhhhcCCCccccc-cCC
Confidence            5899999999999999998654  32                 22  67899999999999999999998654443 222


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|+|. ++++....   .+.+.+.+++++++.+...  .+++|||||+|||||++|+++||++||++||+||+
T Consensus       179 ~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~  253 (460)
T PRK12403        179 LIPDVAHIDEPYWYANGGELT---PAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICR  253 (460)
T ss_pred             CCCCCEEeCCCcccccccCCC---hHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            2 2455566664 33332111   1223344567776666543  24689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       254 ~  254 (460)
T PRK12403        254 Q  254 (460)
T ss_pred             H
Confidence            5

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.94  E-value=1.7e-26  Score=192.95  Aligned_cols=123  Identities=29%  Similarity=0.529  Sum_probs=96.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||+|++.+  |.                 ||  |.+||+|+++|||+|.+++++++...++..+.+
T Consensus       108 ~~sGseA~e~A~klar~~~~~~--~~-----------------~~--r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~  166 (423)
T PRK05964        108 SDSGSVAVEVALKMALQYWRNR--GE-----------------PG--RSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTP  166 (423)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEEcCCcCCccHHHHhcCCCccccccccC
Confidence            5899999999999999998665  32                 45  899999999999999999999986544443333


Q ss_pred             C-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|+|.           ++ ....+++++++++.++   +++|||||+|| +||++|++++|++||++|+++|+
T Consensus       167 ~~~~~~~~~~~~-----------~d-~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~  231 (423)
T PRK05964        167 LLFEQVTAPFPP-----------DG-YEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICD  231 (423)
T ss_pred             cCCCCEEeCCCc-----------ch-hHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHH
Confidence            2 1333444432           12 2334578888888764   57999999999 79999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       232 ~  232 (423)
T PRK05964        232 R  232 (423)
T ss_pred             H
Confidence            5

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.94  E-value=1.8e-26  Score=194.75  Aligned_cols=123  Identities=17%  Similarity=0.204  Sum_probs=97.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|+||||+|+                         |  |.+||+|+++|||+|++++++++...++..+.|
T Consensus       136 ~~sGseAve~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  188 (459)
T PRK06082        136 APGGTSAIGMALKLARHIT-------------------------G--NFKVVSLWDSFHGASLDAISVGGEACFRQGMGP  188 (459)
T ss_pred             CCCcHHHHHHHHHHHHHhc-------------------------C--CCEEEEEeCCCcCccHHHHhhcCCcccccCCCC
Confidence            5899999999999999983                         4  789999999999999999999987665555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|.|. +++|+..    ++.+...++++++++|+.    .++|||||+|||||.| +++||++||++||++|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~  259 (459)
T PRK06082        189 LMAGVERIPPAVSYRGAFPD----ADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICD  259 (459)
T ss_pred             CCCCCEEeCCCcccccccCC----hhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHH
Confidence            3 2455566654 4444421    244566778889888874    3589999999999984 78899999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       260 ~  260 (459)
T PRK06082        260 K  260 (459)
T ss_pred             H
Confidence            5

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.94  E-value=2e-26  Score=192.94  Aligned_cols=126  Identities=23%  Similarity=0.389  Sum_probs=94.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||+||||||+|++.+  |                  +|  |.+||+|+++|||+|++++++++.. .++..+.
T Consensus       109 ~~SGsEAve~AlklAr~~~~~~--g------------------~~--r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  166 (428)
T PRK07986        109 ADSGSVAVEVAMKMALQYWQAK--G------------------EP--RQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYK  166 (428)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--C------------------CC--CcEEEEECCCcCCCcHhhhcccCCchhhhhccC
Confidence            5899999999999999997654  3                  24  8899999999999999999998742 2334444


Q ss_pred             CCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +.. +..++|.|...  +      .+.+...+++++++.|+..   ++++||||+||| ||+||+++||++||++|+++|
T Consensus       167 ~~~~~~~~~~~p~~~--~------~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc  235 (428)
T PRK07986        167 GYLPENLFAPAPQSR--F------DGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLC  235 (428)
T ss_pred             CCCCCCEEECCCCcc--c------chhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHH
Confidence            432 33445555311  1      1112223467788888754   578999999996 999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       236 ~~  237 (428)
T PRK07986        236 DR  237 (428)
T ss_pred             HH
Confidence            85

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.94  E-value=2.2e-26  Score=204.16  Aligned_cols=150  Identities=19%  Similarity=0.255  Sum_probs=95.8

Q ss_pred             CCCcchHHHHHHHHHHH-HHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccC-
Q psy4805           1 MMCGSCSNENAYKNIFI-WYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKID-   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~-   78 (159)
                      ++|||||||+||||||+ |++++  |.+.+-.+.     -....++  |.+||+|++||||.|+++|++++...++..+ 
T Consensus       433 s~sGSeAvE~AlKmA~r~y~~~~--G~~~~~~~~-----~~~~~~~--r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~  503 (817)
T PLN02974        433 SDNGSTAIEVALKMAFRKFIVDH--GFLENSGNE-----KRGGDLI--ELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQ  503 (817)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhc--CCCcccccc-----cccccCC--CCEEEEECCCcCCCCHHHHhhCCchhhhcccc
Confidence            58999999999999976 66554  421000000     0000013  8899999999999999999999865544433 


Q ss_pred             CCC--CCCCcccCCCC--CC-------CCc--cch-----h------------hhhHHHHHHHHHHHHHHHHhc--cCCC
Q psy4805          79 IPA--FDWPIASFPKY--KY-------PLE--ENE-----R------------ENKAEDEKCLAEVEDLITKYN--KKGT  126 (159)
Q Consensus        79 ~~~--~~~~~~p~p~~--~~-------~~~--~~~-----~------------~~~~~~~~~~~~le~~i~~~~--~~~~  126 (159)
                      .+.  ....+++.|..  ++       |..  ...     .            ....+...|++++++.|++..  .+++
T Consensus       504 ~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~  583 (817)
T PLN02974        504 QPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNG  583 (817)
T ss_pred             cccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCC
Confidence            221  12233333321  11       111  000     0            012234567788888887421  1257


Q ss_pred             CeEEEEEcc-cccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +|||||+|| +||+|||++||++||++||++||+
T Consensus       584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~  617 (817)
T PLN02974        584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRS  617 (817)
T ss_pred             CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH
Confidence            899999999 499999999999999999999985

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.94  E-value=2.3e-26  Score=193.21  Aligned_cols=129  Identities=37%  Similarity=0.470  Sum_probs=95.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      +||||||||+||||||+|+                         |  |.+||+|+++|||+|.+++++++.. .++..+.
T Consensus       121 ~~SGsEA~e~AlklAr~~t-------------------------g--r~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~  173 (441)
T PRK05769        121 TNSGTESNEAAIKIARYHT-------------------------G--RKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFF  173 (441)
T ss_pred             CCchHHHHHHHHHHHHHHh-------------------------C--CCeEEEECCCcCCccHHHHHhcCCCcccccCCC
Confidence            5899999999999999984                         4  7899999999999999999998753 2344444


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHH-HHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHH
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVED-LITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI  156 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~-~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~l  156 (159)
                      |. .++.++|+|+ +++|+...  ..+++.+.+++.+++ +++... .+++|||||+|||||++|+++||++||++|+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~~~~~~~-~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l  250 (441)
T PRK05769        174 PLMPGVIHVPYPNPYRNPWGIE--NPEECGNAVLDFIEDYLFKKLV-PPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKL  250 (441)
T ss_pred             CCCCCeEEeCCCccccccccCC--chHHHHHHHHHHHHHHHHhhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHHH
Confidence            43 2455567664 44443210  012233456777877 443311 246899999999999999999999999999999


Q ss_pred             hcC
Q psy4805         157 GKK  159 (159)
Q Consensus       157 c~~  159 (159)
                      |++
T Consensus       251 ~~~  253 (441)
T PRK05769        251 ADK  253 (441)
T ss_pred             HHH
Confidence            985

>PRK06148 hypothetical protein; Provisional

Probab=99.94  E-value=2.8e-26  Score=208.28  Aligned_cols=128  Identities=18%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+||||||.|+                         |  |.+||+|+++|||+|++++++|+.. ++..+.+
T Consensus       686 ~nSGsEA~e~AlklAr~~t-------------------------G--r~~ii~~~~~YHG~t~~a~s~s~~~-~~~~~~~  737 (1013)
T PRK06148        686 VNSGSEANSLALRLARAHT-------------------------G--QRDAIVLDHAYHGTTTELIDLSPYK-FNRKGGK  737 (1013)
T ss_pred             eCCcHHHHHHHHHHHHHhc-------------------------C--CCeEEEEcCCccCCCcchhhcCchh-hcccCCC
Confidence            5899999999999999994                         5  7899999999999999999998843 2333322


Q ss_pred             C--CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          81 A--FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~--~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .  ..+..++.|+ ++.|+...   +..+...+++.+++.++.....+++|||||+|||||+||+++||++||++||++|
T Consensus       738 ~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc  814 (1013)
T PRK06148        738 GRPDHVEVAEVPDSYRGPERWP---DAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMV  814 (1013)
T ss_pred             CCCCCceEcCCCCccccCCCCC---hhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHH
Confidence            2  1333445553 44454311   1223445566677666532222468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       815 ~~  816 (1013)
T PRK06148        815 RA  816 (1013)
T ss_pred             HH
Confidence            85

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=7.3e-26  Score=189.59  Aligned_cols=128  Identities=30%  Similarity=0.391  Sum_probs=96.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCC-ccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHS-KYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~-~~~~~~~~   79 (159)
                      +||||||||.|||+||.|+                         |  |++||+|+++|||+|.+++++++. ..++..+.
T Consensus       109 ~~SGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~  161 (433)
T PRK08117        109 SNSGAEAIEGALKLAKHVT-------------------------K--RPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQ  161 (433)
T ss_pred             eCcHHHHHHHHHHHHHHhc-------------------------C--CCeEEEECCCcCCcCHHHHhhcCCCccccccCC
Confidence            4899999999999999984                         4  789999999999999999999875 33333343


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. .++.++|+|+ +++|...   ..+.+...++++++++++... .+++|||||+|||||++|+++||++||++|++||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc  237 (433)
T PRK08117        162 PLLGSVYQAPYPYCDRCPKGE---DPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREIC  237 (433)
T ss_pred             CCCCCcEEeCCCccccccccC---chhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHH
Confidence            32 2455677764 3333211   012233345778888876521 1468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       238 ~~  239 (433)
T PRK08117        238 DR  239 (433)
T ss_pred             HH
Confidence            85

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=6.5e-26  Score=189.46  Aligned_cols=122  Identities=30%  Similarity=0.330  Sum_probs=91.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||+||||||.|+                         |  |++||+|+++|||+|.+++++++.. .++..+.
T Consensus       107 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~  159 (421)
T PRK06777        107 FTTGAEAVENAVKIARAYT-------------------------G--RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFG  159 (421)
T ss_pred             eCCcHHHHHHHHHHHHHhh-------------------------C--CCeEEEEcCCcCCccHHHHhhcCCCcccccCCC
Confidence            5899999999999999984                         4  7889999999999999999999853 2334443


Q ss_pred             CCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          80 PAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        80 ~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      |.. ++.++|+|+.....         ....+++.+++++.+.. .+++|||||+|||||++|++++|++||++|+++|+
T Consensus       160 ~~~~~~~~~~~p~~~~~~---------~~~~~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~  229 (421)
T PRK06777        160 PFPGSIFHALYPNELHGV---------SVEEALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCD  229 (421)
T ss_pred             CCCCCcEEcCCCccccCc---------CHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence            332 33445555311100         12234677888776421 24789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       230 ~  230 (421)
T PRK06777        230 E  230 (421)
T ss_pred             H
Confidence            5

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=7.9e-26  Score=189.21  Aligned_cols=122  Identities=27%  Similarity=0.295  Sum_probs=93.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||+||||||.|+                         |  |.+||+|+++|||+|++++++++.. .++..+.
T Consensus       107 ~~SGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~  159 (425)
T PRK07495        107 VTTGAEAVENAVKIARAAT-------------------------G--RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFG  159 (425)
T ss_pred             CCchHHHHHHHHHHHHHhh-------------------------C--CCeEEEECCCcCCccHHHhhhcCCCcccccCCC
Confidence            5899999999999999984                         4  7889999999999999999999853 3444454


Q ss_pred             CC-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          80 PA-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        80 ~~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      +. .++.++|+|.....         ...+.+++.+++++.... .+++|||||+||+||++|++++|++|+++|+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~g---------~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~  229 (425)
T PRK07495        160 AMMPDVYHVPFPVELHG---------VSVEQSLAALDKLFKADV-DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCD  229 (425)
T ss_pred             CCCCCeEEecCCccccc---------ccHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence            43 24556666631110         011234677777776321 24689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       230 ~  230 (425)
T PRK07495        230 Q  230 (425)
T ss_pred             H
Confidence            5

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.93  E-value=9.4e-26  Score=187.90  Aligned_cols=115  Identities=28%  Similarity=0.477  Sum_probs=88.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+||||||+|+..+  |.+                ++  |.+||+|+++|||+|++++++++.+.++..+.+
T Consensus       104 ~~sGseA~e~AlklAr~~~~~~--g~~----------------~~--r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~  163 (408)
T PRK04612        104 CNSGTEANEAAIKLVRKWASSQ--GRP----------------AD--KRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEP  163 (408)
T ss_pred             cCchHHHHHHHHHHHHHHHHhh--CCC----------------CC--CcEEEEECCCcCCccHHHHHhcCCcccccCCCC
Confidence            5899999999999999998654  321                23  778999999999999999999987655544433


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +..++|+             ++      ++.+++++.     .+++||||+||+|++||++++|++||++|++||++
T Consensus       164 ~~~~~~~~~~-------------~d------~~~l~~~~~-----~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~  219 (408)
T PRK04612        164 LPGGFRYVDF-------------ND------VEALEAAMA-----GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQ  219 (408)
T ss_pred             CCCCceEcCC-------------CC------HHHHHHhhC-----CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence            21 1111222             23      455666663     36899999999999999999999999999999985

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.93  E-value=8.4e-26  Score=189.14  Aligned_cols=116  Identities=20%  Similarity=0.298  Sum_probs=86.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||.|+                         |  |.+||+|+++|||+|.+++++++....+.. .+
T Consensus       115 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~-~~  166 (428)
T PRK12389        115 VNSGTEAVMTTIRVARAYT-------------------------G--RTKIIKFAGCYHGHSDLVLVAAGSGPSTLG-TP  166 (428)
T ss_pred             eCCHHHHHHHHHHHHHHhh-------------------------C--CCEEEEECCCcCCChHHHHHhcCCcccccC-CC
Confidence            5899999999999999994                         4  889999999999999999999875422211 01


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++...+.|. ...|      ++|      ++.++++++++   +++|||||+|||||++|+++||++||++|+++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~------~~d------~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~  231 (428)
T PRK12389        167 DSAGVPKSIAQEVITVP------FND------IEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAH  231 (428)
T ss_pred             CCCCCCCcccCceEEcC------CCC------HHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHH
Confidence            1 0100001111 1222      233      56677778754   4689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       232 ~  232 (428)
T PRK12389        232 E  232 (428)
T ss_pred             H
Confidence            5

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-25  Score=188.68  Aligned_cols=126  Identities=22%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||.||||||.|+                         |  |.+||+|+++|||+|.+++++++.. .++..+.
T Consensus       123 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~  175 (443)
T PRK06058        123 FNSGAEAVENAVKIARSYT-------------------------G--RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFG  175 (443)
T ss_pred             eCCcHHHHHHHHHHHHHhh-------------------------C--CCeEEEECCCcCcChHHHHhhcCCCcccccccC
Confidence            5899999999999999994                         4  7889999999999999999999753 2334443


Q ss_pred             CCC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PAF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +.. +...+|+|. ++.+.... ...+.+...+++.+++.+.     +++|||||+|||||+||+++||++||++||++|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-----~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc  249 (443)
T PRK06058        176 PFAPEVYRAPMSYPYRDPKGLA-TDGEEAAARAITVIEKQVG-----ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWC  249 (443)
T ss_pred             CCCCCceEcCCCcccccccccc-cchHHHHHHHHHHHHHhhC-----CCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence            322 233344432 22211000 0011222233444444332     468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       250 ~~  251 (443)
T PRK06058        250 RE  251 (443)
T ss_pred             HH
Confidence            85

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=2.2e-25  Score=187.35  Aligned_cols=128  Identities=23%  Similarity=0.325  Sum_probs=97.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      +||||||||.|||+||.|+                         |  |.+||+|.++|||+|++++++++.. .++..+.
T Consensus       107 ~~sGsEAve~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  159 (443)
T PRK08360        107 GLSGSDANDGAIKFARAYT-------------------------K--RRKILSYLRSYYGSTYGAMSLTGLDFPVRALVG  159 (443)
T ss_pred             cCCHHHHHHHHHHHHHHhc-------------------------C--CCeEEEEeCCcCCcCHHHHHhcCCCcccccCCC
Confidence            5899999999999999994                         4  7899999999999999999998853 2333444


Q ss_pred             CCCCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          80 PAFDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        80 ~~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      +..++.++|+|+ ++.++...   .+.+...+++.++++++... .+++|||||+||+||.+|+++||++|+++|+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~-~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~  235 (443)
T PRK08360        160 ELSDVHYIPYPDCYRCPFGKE---PGSCKMECVEYIKEKFEGEV-YAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILD  235 (443)
T ss_pred             CCCCcEEEeCCccccccccCc---hhhhHHHHHHHHHHHHHhcc-CCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence            433556677775 33333210   12333456777878876521 24689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       236 ~  236 (443)
T PRK08360        236 E  236 (443)
T ss_pred             H
Confidence            5

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.93  E-value=2e-25  Score=186.56  Aligned_cols=122  Identities=24%  Similarity=0.294  Sum_probs=92.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||+|||+||.|+                         |  |.+||+|+++|||+|++++++++.. .++..+.
T Consensus       107 ~~sGseA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~  159 (421)
T PRK09792        107 FTTGAEAVENAVKIARAHT-------------------------G--RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFG  159 (421)
T ss_pred             eCChHHHHHHHHHHHHHhc-------------------------C--CCeEEEECCCcCCccHHHHhhcCCCcccccCCC
Confidence            4799999999999999983                         5  7799999999999999999998853 3444444


Q ss_pred             CCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          80 PAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        80 ~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      +.. ++.++|+|....    .     .....+++.+++++++.. .+++|||||+||+||.+|++++|++|+++|+++|+
T Consensus       160 ~~~~~~~~v~~p~~~~----~-----~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~  229 (421)
T PRK09792        160 PFPGSVYHVPYPSDLH----G-----ISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCD  229 (421)
T ss_pred             CCCCCcEEcCCCcccc----c-----ccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            432 344556653110    0     012235778888887421 14689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       230 ~  230 (421)
T PRK09792        230 E  230 (421)
T ss_pred             H
Confidence            5

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.92  E-value=6.7e-25  Score=180.89  Aligned_cols=118  Identities=21%  Similarity=0.285  Sum_probs=89.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||+..|||+||.||                         |  |.+||.|+|+|||++...+--.++..-..+ .|
T Consensus       115 vnSGTEAtmsAiRlARa~T-------------------------g--R~kIikF~G~YHG~~D~~lv~agsg~~t~g-~p  166 (432)
T COG0001         115 VNSGTEATMSAIRLARAYT-------------------------G--RDKIIKFEGCYHGHSDSLLVKAGSGAATLG-SP  166 (432)
T ss_pred             ecchhHHHHHHHHHHHHhh-------------------------C--CCeEEEEcCCCCCCccHHHhhcCcCcccCC-CC
Confidence            5899999999999999995                         5  899999999999999887765443211100 01


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .  ...+|.-..+  .....+|||      ++.+++++++.   +++|||||+|||+|+.|+|+|.++||++||+||+|
T Consensus       167 ~--s~Gvp~~~a~--~ti~~~yND------~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e  232 (432)
T COG0001         167 S--SPGVPADVAK--HTLVLPYND------LEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEE  232 (432)
T ss_pred             C--CCCCChhhhc--cEEEecCCC------HHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHH
Confidence            1  0111111000  112235688      88999999986   68999999999999999999999999999999986

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.92  E-value=7.5e-25  Score=180.08  Aligned_cols=107  Identities=29%  Similarity=0.432  Sum_probs=85.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||+|.|||+||.|+                         |  |.+||+|+++|||+|.+++++++.+.++..+.|
T Consensus        87 ~~SGseA~e~Alklar~~~-------------------------g--r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p  139 (364)
T PRK04013         87 GNSGTEAVEAALKFARLYT-------------------------G--RKEIIAMTNAFHGRTMGALSATWKPKYREDFEP  139 (364)
T ss_pred             eCchHHHHHHHHHHHHHHh-------------------------C--CCEEEEECCccccCchhhccCCCCcccccCCCC
Confidence            5899999999999999984                         4  789999999999999999999987655554443


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|+             +|      .+.+++.+.      +++||||+||+||+||+++||++||++||++|++
T Consensus       140 ~~~~~~~~~~-------------~d------~~~l~~~i~------~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~  194 (364)
T PRK04013        140 LVPGFKHIPF-------------ND------VEAAKEAIT------KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTED  194 (364)
T ss_pred             CCCCcEEecC-------------CC------HHHHHHHhc------CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH
Confidence            32 2222222             23      344555553      4899999999999999999999999999999985

>PLN00144 acetylornithine transaminase

Probab=99.92  E-value=1.3e-24  Score=179.57  Aligned_cols=121  Identities=26%  Similarity=0.355  Sum_probs=88.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||.|+.++++..++              .++.+|.+||+|+++|||+|++++++++...++..+.+
T Consensus        78 ~~sGseA~e~AlklAr~~~~~~~~~~~~--------------~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~  143 (382)
T PLN00144         78 CNSGTEANEAAIKFARKYQRVRAPDKKD--------------PAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEP  143 (382)
T ss_pred             eCCcHHHHHHHHHHHHHHHhccCCCCcc--------------ccccccceEEEECCCcccccHHHHhcCCCccccccCCC
Confidence            5899999999999999998654211100              00001678999999999999999999987655544433


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|             ++|      ++.+++.+.     .++++|||+||+||.||+++++++|+++|++||++
T Consensus       144 ~~~~~~~~~-------------~~d------~~~l~~~~~-----~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~  199 (382)
T PLN00144        144 LMPGVTFVE-------------YGN------LEAARKLIQ-----KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDE  199 (382)
T ss_pred             CCCCeEEeC-------------CCC------HHHHHHhcC-----CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            21 222222             233      456666663     35899999999999999999999999999999985

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.92  E-value=2.7e-24  Score=180.06  Aligned_cols=127  Identities=22%  Similarity=0.389  Sum_probs=94.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcc-ccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKY-IHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~-~~~~~~   79 (159)
                      ++|||||||.|||+||.|++.+  |.                 ++  |.+||+|.++|||+|.+++++++... ++..+.
T Consensus       111 ~~sGseA~e~AlklAr~~~~~~--~~-----------------~~--r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~  169 (427)
T TIGR00508       111 ADSGSVAVEVALKMALQYWQAK--GE-----------------KN--RQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYK  169 (427)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhh--CC-----------------CC--ccEEEEEcCCcCCccHhhhcccCCccccccccc
Confidence            5799999999999999998654  32                 35  88999999999999999999988532 333333


Q ss_pred             CC-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. ..+.++|+|....+.    .+    ...++++++++++.+   .+++||||+||| ||+||+++++++||++|+++|
T Consensus       170 ~~~~~~~~~~~p~~~~~~----~~----~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc  238 (427)
T TIGR00508       170 GYLPEQIFAPAPQNRFDE----EW----NEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALC  238 (427)
T ss_pred             ccCCCCeEcCCCCccccc----hh----HHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHH
Confidence            32 233445555322111    11    122367778888764   468999999997 999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       239 ~~  240 (427)
T TIGR00508       239 KQ  240 (427)
T ss_pred             HH
Confidence            85

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06149 hypothetical protein; Provisional

Probab=99.91  E-value=2e-24  Score=195.79  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=88.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccC-C
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKID-I   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~-~   79 (159)
                      +||||||||+||||||.|+                         |  |.+||+|+++|||+|+++++++++...+... .
T Consensus       647 ~~SGsEA~e~AlklAr~~t-------------------------g--r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~  699 (972)
T PRK06149        647 VNSGSEANDLAIRLAWAAS-------------------------G--RRDVVSVLEAYHGWTVATDAVSTSIADNPQALE  699 (972)
T ss_pred             eCCchHHHHHHHHHHHHhc-------------------------C--CCeEEEEeCCCCCcChhHhhhcCCccccccccC
Confidence            5899999999999999994                         4  7899999999999999999997643212111 1


Q ss_pred             CCC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PAF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +.. .+..++.|+ +++++...    + ....+.+.+++.++.....+++|||||+|||||++|+++||++||++|+++|
T Consensus       700 ~~~~~v~~~~~p~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc  774 (972)
T PRK06149        700 TRPDWVHPVESPNTYRGRFRGA----D-SAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAV  774 (972)
T ss_pred             CCCCCeEEeCCCcccCCcCCCc----c-cHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHH
Confidence            111 233455554 44444211    1 1122333333333321112578999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       775 ~~  776 (972)
T PRK06149        775 RA  776 (972)
T ss_pred             HH
Confidence            85

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.91  E-value=4.9e-24  Score=180.44  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchh--hhhcCCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLG--CLSTTHSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~g--a~s~s~~~~~~~~~   78 (159)
                      +||||||||.|||+||.|+                         |  |.+||+|+++|||+|..  +++.++........
T Consensus       161 ~~SGsEA~e~AlklAR~~t-------------------------g--r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~  213 (474)
T PLN02482        161 VNSGTEACMGVLRLARAYT-------------------------G--REKIIKFEGCYHGHADSFLVKAGSGVATLGLPD  213 (474)
T ss_pred             eCChHHHHHHHHHHHHHhc-------------------------C--CCEEEEECCccCCCcchhhhhcCCCccccCCCC
Confidence            5899999999999999994                         5  88999999999998754  33333322111111


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .     ..+|.+..  +.....+++|      ++.++++|+++   +++|||||+|||||++|+++|+++||++|++||+
T Consensus       214 ~-----~g~~~~~~--~~~~~~~~nd------~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~  277 (474)
T PLN02482        214 S-----PGVPKAAT--SATLTAPYND------LEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITK  277 (474)
T ss_pred             C-----CCCCCCCC--CCeEEecCCC------hHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHH
Confidence            1     11121110  0001112344      56778888764   5789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       278 ~  278 (474)
T PLN02482        278 E  278 (474)
T ss_pred             H
Confidence            5

>PRK07046 aminotransferase; Validated

Probab=99.90  E-value=7.9e-24  Score=178.43  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=81.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcC--CCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTT--HSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s--~~~~~~~~~   78 (159)
                      +||||||||.|||+||.|+                         |  |.+||+|+++|||++.+++...  +....+..+
T Consensus       136 ~nSGtEA~e~AlrlAR~~T-------------------------G--r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~  188 (453)
T PRK07046        136 ATTATDANRFVLRWARAVT-------------------------G--RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGL  188 (453)
T ss_pred             ECCHHHHHHHHHHHHHHhh-------------------------C--CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCC
Confidence            5899999999999999994                         5  8899999999999987776532  221111111


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .+      +|. .... .....+|+|      ++.+++++.     .++|||||+|||||++|+++|+++||++||++|+
T Consensus       189 ~g------~~~-~~~~-~~~~~~~nd------~~~l~~~l~-----~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~  249 (453)
T PRK07046        189 LG------QVH-DLTA-TTRVVEFND------LAALEAALA-----DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTR  249 (453)
T ss_pred             CC------CCc-cccC-ceEeeCCCC------HHHHHHHhC-----CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHH
Confidence            10      000 0000 001123455      677777773     3689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       250 ~  250 (453)
T PRK07046        250 R  250 (453)
T ss_pred             H
Confidence            5

>PLN02624 ornithine-delta-aminotransferase

Probab=99.90  E-value=1.8e-23  Score=177.13  Aligned_cols=118  Identities=25%  Similarity=0.333  Sum_probs=90.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||.|+..+ +|..                ++  |.+||+|.++|||+|++++++++.+.++..+.|
T Consensus       138 ~~SGseA~e~AlklAr~~~~~~-~g~~----------------~~--~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~  198 (474)
T PLN02624        138 MNTGAEGVETAIKLARKWGYEK-KGIP----------------KN--EAIIVSCCGCFHGRTLAAISMSCDNEATRGFGP  198 (474)
T ss_pred             eCChHHHHHHHHHHHHHHHHhh-cCCC----------------CC--CcEEEEECCCcCCCCHHHhhcCCCccccccCCC
Confidence            5899999999999999986543 1210                13  678999999999999999999986654444433


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|             ++|      ++.++++|+..   ++++||||+||+|+.+|+++||++||++|+++|++
T Consensus       199 ~~~~~~~~~-------------~~d------~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~  256 (474)
T PLN02624        199 LLPGHLKVD-------------FGD------LDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSK  256 (474)
T ss_pred             CCCCceEeC-------------CCC------HHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence            32 111121             233      56677777653   47899999999999999999999999999999985

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.90  E-value=1.3e-23  Score=176.30  Aligned_cols=115  Identities=19%  Similarity=0.239  Sum_probs=83.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccc---hhhhhcCCCcccccc
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT---LGCLSTTHSKYIHKI   77 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T---~ga~s~s~~~~~~~~   77 (159)
                      ++|||||||.|||+||.|+                         |  |.+||+|+++|||+|   ++++++++.....  
T Consensus       116 ~~SGsEA~e~AiklAr~~t-------------------------g--r~~ii~~~~~yHG~td~~~~~~~~~~~~~~~--  166 (433)
T PRK00615        116 VSSGTEATMTAVRLARGIT-------------------------G--RSIIIKFLGCYHGHADTLLQGISFSETSLDT--  166 (433)
T ss_pred             eCchHHHHHHHHHHHHHhh-------------------------C--CCEEEEEcCccCCCCcccCcccccCCCCcCc--
Confidence            5899999999999999994                         5  889999999999998   7788777632110  


Q ss_pred             CCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          78 DIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        78 ~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                       .+.  ... +.+.  .+.....+++|      +++++++|+++   .+++||||+|||||.+|+++|+++||++|+++|
T Consensus       167 -~~~--~~~-~~~~--~~~~~~~~~~d------~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc  231 (433)
T PRK00615        167 -LTH--LVD-TDLA--HPLTLSLPYND------FQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTC  231 (433)
T ss_pred             -CCC--CCC-CCCC--CCCeEeCCCCC------HHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHH
Confidence             000  000 0110  01111112344      56777888764   468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       232 ~~  233 (433)
T PRK00615        232 RR  233 (433)
T ss_pred             HH
Confidence            85

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.90  E-value=2.4e-23  Score=172.59  Aligned_cols=113  Identities=30%  Similarity=0.374  Sum_probs=87.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||.|++++  +.                 ++  |.+||+++++|||+|.+++++++.+.++..+.|
T Consensus        98 ~~SGseA~e~Alk~ar~~~~~~--~~-----------------~~--r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~  156 (397)
T TIGR03246        98 CNSGAEANEAALKLARRYALDK--HG-----------------AD--KSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAP  156 (397)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEECCCcCCccHHHHHhcCCcccccCCCC
Confidence            5899999999999999998654  21                 34  889999999999999999999986544443333


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|             ++|      ++.+++.+.      ++++|||+||+|+.+|+++||++||++|+++|++
T Consensus       157 ~~~~~~~~~-------------~~d------~~~l~~~l~------~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~  211 (397)
T TIGR03246       157 LPGGIKHAP-------------YND------LAAAKALIS------DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDR  211 (397)
T ss_pred             CCCceEEeC-------------CCC------HHHHHHHhc------cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence            21 111111             233      566666663      3799999999999999999999999999999985

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.90  E-value=2.7e-23  Score=172.75  Aligned_cols=113  Identities=30%  Similarity=0.378  Sum_probs=87.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||+|+..+  +.                 ++  |.+||+|+++|||+|.+++++++.+.++..+.+
T Consensus       102 ~~sGseA~e~Alk~ar~~~~~~--~~-----------------~~--r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~  160 (406)
T PRK12381        102 CNSGAEANEAALKLARKYAHDR--YG-----------------SH--KSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAP  160 (406)
T ss_pred             cCCcHHHHHHHHHHHHHHHhhc--CC-----------------CC--CCeEEEECCCcCCcchhHHhhcCCcccccCCCC
Confidence            5899999999999999997543  22                 24  889999999999999999999987654443333


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +..       ..|      ++|      ++.+++.+.      ++++|||+||+|+.||+++||++||++|+++|+|
T Consensus       161 ~~~~~~-------~~~------~~d------~~~l~~~l~------~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~  215 (406)
T PRK12381        161 LPPDIR-------HAA------YND------LNSASALID------DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDR  215 (406)
T ss_pred             CCCCee-------EeC------CCC------HHHHHHhcc------CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHH
Confidence            21 111       111      233      456666653      4799999999999999999999999999999985

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.89  E-value=4e-23  Score=171.48  Aligned_cols=113  Identities=33%  Similarity=0.510  Sum_probs=85.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||+|+.+.  +                  ++  |.+||+|+++|||+|++++++++...++..+.|
T Consensus        99 ~~SGseA~e~Aik~ar~~~~~~--~------------------~~--r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~  156 (395)
T PRK03715         99 ANSGAEANEGAIKLARKWGRKH--K------------------NG--AYEIITFDHSFHGRTLATMSASGKPGWDTIFAP  156 (395)
T ss_pred             eCCcHHHHHHHHHHHHHHhhcc--C------------------CC--CcEEEEECCCcCCChHHHHhhcCCcccccCCCC
Confidence            5899999999999999986421  1                  34  789999999999999999999986544433332


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..       +.+.     ..++++      ++++++.+.      ++++|||+||+||++|+++||++||++|+++|++
T Consensus       157 ~~-------~~~~-----~~~~~d------~~~l~~~l~------~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~  211 (395)
T PRK03715        157 QV-------PGFP-----KAELND------IASVEKLIT------DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQ  211 (395)
T ss_pred             CC-------CCce-----eeCCch------HHHHHHHcC------CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence            21       1110     001223      566666653      4799999999999999999999999999999985

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.86  E-value=1.7e-21  Score=162.97  Aligned_cols=122  Identities=27%  Similarity=0.325  Sum_probs=88.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++|||||||.|||+||.++                         +  |.+||+|+++|||+|.+++++++.. .++.++.
T Consensus       108 ~~sGsea~e~Alklar~~~-------------------------~--r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~  160 (425)
T PRK08088        108 VTTGSEAVENAVKIARAAT-------------------------K--RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG  160 (425)
T ss_pred             eCCcHHHHHHHHHHHHHHh-------------------------C--CCeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence            4899999999999999984                         3  6789999999999999999998742 2333332


Q ss_pred             CCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          80 PAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        80 ~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      +.. ++..+++|.   +.      ++...+.+++.+++++.... .++++||||+||+||++|+++++++|+++|+++|+
T Consensus       161 ~~~~~~~~~~~p~---~~------~~~~~~~~~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~  230 (425)
T PRK08088        161 LMPGHVYRALYPC---PL------HGVSEDDAIASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCD  230 (425)
T ss_pred             CCCCCcEEcCCCc---cc------cCccHHHHHHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence            221 222233331   11      11112345777888886321 24789999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       231 ~  231 (425)
T PRK08088        231 E  231 (425)
T ss_pred             H
Confidence            5

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.84  E-value=8.7e-21  Score=157.41  Aligned_cols=113  Identities=31%  Similarity=0.397  Sum_probs=85.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|+|+||.|+.+++ +                  ++  |.+||+|+++|||+|++++++++.+.+...+.+
T Consensus       103 ~~sGseA~e~a~klar~~~~~~~-~------------------~~--~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~  161 (403)
T PRK05093        103 ANSGAEANEAAFKLARRYACDRH-G------------------PE--KTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGP  161 (403)
T ss_pred             eCchHHHHHHHHHHHHHHHhhcC-C------------------CC--CCeEEEEcCCcCCchhhhHhhcCChhhhhcCCC
Confidence            58999999999999999975431 1                  23  889999999999999999999876533322222


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. .+.++             +++|      ++++++.+.      +++++||+||+++.||+++|+++|+++|+++|++
T Consensus       162 ~~~~~~~~-------------~~~d------~~~l~~~l~------~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~  216 (403)
T PRK05093        162 KPADITHV-------------PFND------LAAVKAVID------DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQ  216 (403)
T ss_pred             CCCCcEEe-------------CCCC------HHHHHHHhc------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHH
Confidence            11 11111             1234      566666653      3699999999999999999999999999999985

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.84  E-value=1.2e-20  Score=156.30  Aligned_cols=115  Identities=27%  Similarity=0.378  Sum_probs=85.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||+|++... |..                +|  |.+||+++++|||+|.+++++++.+.++..+.+
T Consensus       103 ~~SGseA~e~Alk~a~~~~~~~~-g~~----------------~~--r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~  163 (396)
T PRK04073        103 MNTGAEAVETAIKAARRWAYDVK-GVE----------------PN--KAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGP  163 (396)
T ss_pred             cCChHHHHHHHHHHHHHHhhhcc-CCC----------------CC--CCEEEEECCCcCCCCHHHHhhcCCcccccCCCC
Confidence            58999999999999999965321 210                34  789999999999999999999986544433333


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+ +..++|             +++      ++.+++.+.      +++++||+||+|+.+|+++++++||++|+++|++
T Consensus       164 ~~~~~~~~~-------------~~d------~~~l~~~i~------~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~  218 (396)
T PRK04073        164 MLPGIKKIP-------------YGD------LEALKAAIT------PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKE  218 (396)
T ss_pred             CCCCceEeC-------------CCC------HHHHHHhcc------cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHH
Confidence            21 111122             123      455665553      3689999999999999999999999999999985

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.84  E-value=2.2e-20  Score=154.88  Aligned_cols=118  Identities=29%  Similarity=0.399  Sum_probs=88.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||||.|||+||.|+.++ ++..                ++  |++|++++++|||+|.+++++++...++..+.+
T Consensus       100 ~~SGs~A~e~ai~~a~~~~~~~-~~~~----------------~~--~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~  160 (401)
T TIGR01885       100 MNTGAEAVETAIKLARKWGYKV-KGIP----------------EN--QAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGP  160 (401)
T ss_pred             eCccHHHHHHHHHHHHHHhhhh-cCCC----------------CC--CCEEEEECCCcCcccHHHHhCcCCcccccccCC
Confidence            5899999999999999997543 1210                23  889999999999999999999876433332222


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ....+       |      +++      +++|+++++..   ++++++||+||+++.+|++.|+++||++|+++|++
T Consensus       161 ~~~~~~~~-------~------~~d------~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~  218 (401)
T TIGR01885       161 YVPGFKKI-------P------YNN------LEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTK  218 (401)
T ss_pred             CCCCceEe-------C------CCC------HHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence            11 11111       1      233      56677777654   46899999999999999999999999999999985

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.84  E-value=2.1e-20  Score=156.46  Aligned_cols=116  Identities=23%  Similarity=0.344  Sum_probs=83.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcccc--ccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIH--KID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~--~~~   78 (159)
                      ++|||||||+|+|+||.|+                         |  |.+||+|+++|||.|.+++++++.....  ..+
T Consensus       112 ~~sGseA~e~Aik~a~~~~-------------------------g--~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~  164 (426)
T PRK00062        112 VNSGTEATMSAIRLARGYT-------------------------G--RDKIIKFEGCYHGHADSLLVKAGSGAATLGLPD  164 (426)
T ss_pred             ecCHHHHHHHHHHHHHHHh-------------------------C--CCeEEEEcCccCCchhhhhhccCccccccCCCC
Confidence            5899999999999999984                         4  6799999999999999888887643211  111


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .+... ..++...+++|+      ++      ++.+++.++..   ++++++||+||+||++|+++|+++||++|++||+
T Consensus       165 ~~~~~-~~~~~~~~~~~~------~d------~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~  228 (426)
T PRK00062        165 SPGVP-EDFAKHTLTAPY------ND------LEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCD  228 (426)
T ss_pred             CCCCC-cccccceEEcCC------CC------HHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHH
Confidence            11100 000000122222      33      56677777654   4689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       229 ~  229 (426)
T PRK00062        229 E  229 (426)
T ss_pred             H
Confidence            5

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.83  E-value=3.9e-20  Score=154.34  Aligned_cols=115  Identities=23%  Similarity=0.349  Sum_probs=83.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcccc--ccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIH--KID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~--~~~   78 (159)
                      ++|||||+|.|+|+||.|+                         |  |.+||+|+++|||.+..++++++.....  ..+
T Consensus       110 ~~sGseA~e~Alk~ar~~~-------------------------g--r~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  162 (423)
T TIGR00713       110 VNSGTEATMSAVRLARGYT-------------------------G--RDKIIKFEGCYHGHHDALLVKAGSGAATLGLPT  162 (423)
T ss_pred             eCCHHHHHHHHHHHHHHhh-------------------------C--CCEEEEEcCCCCCChhhhhccccCcccccCCCC
Confidence            5899999999999999994                         4  7899999999999998888876543111  111


Q ss_pred             CCCCCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          79 IPAFDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        79 ~~~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+..  ...+.+. ++.|      +++      ++++++++.++   +++++|||+||+|+++|+++++++||++|+++|
T Consensus       163 ~~~~--~~~~~~~~~~~~------~~d------~~~l~~~i~~~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~  225 (423)
T TIGR00713       163 SPGV--PEDFAKLTLVLP------YND------LEALEEVFEEY---GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALT  225 (423)
T ss_pred             CCCC--CcccccceEEeC------CCC------HHHHHHHHHHc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHH
Confidence            1110  0001111 1112      233      56777788754   468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       226 ~~  227 (423)
T TIGR00713       226 EE  227 (423)
T ss_pred             HH
Confidence            85

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.81  E-value=2e-19  Score=148.36  Aligned_cols=113  Identities=27%  Similarity=0.406  Sum_probs=85.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|+|+||.|+...  |.                 ++  |.+||+++++|||++.+++++++.+.++..+.+
T Consensus        94 ~~sGseA~~~al~~ar~~~~~~--G~-----------------~~--r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  152 (389)
T PRK01278         94 TNSGAEAVECAIKTARRYHYGK--GH-----------------PE--RYRIITFEGAFHGRTLATIAAGGQEKYLEGFGP  152 (389)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEECCCcCCCcHHHHhccCChhhcccCCC
Confidence            5899999999999999997543  32                 34  789999999999999999999886544333322


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++.++|             ++|      ++++++.+.      ++++|||+||+|+.+|++++|++|+++|+++|+|
T Consensus       153 ~~~~~~~~~-------------~~d------~~~l~~~l~------~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~  207 (389)
T PRK01278        153 LVPGFDQVP-------------FGD------IEALKAAIT------PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDE  207 (389)
T ss_pred             CCCCceEeC-------------CCC------HHHHHHhhC------CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence            11 111111             123      456666653      3799999999999999999999999999999985

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.78  E-value=8.6e-19  Score=143.91  Aligned_cols=107  Identities=30%  Similarity=0.444  Sum_probs=82.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||||.|+|+||.++                         |  |.+||+++++|||++++++++++....+..+.+
T Consensus        92 ~~sG~~a~~~A~~~a~~~~-------------------------g--~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~  144 (377)
T PRK02936         92 CNSGAEANEAALKLARKHT-------------------------G--KSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGP  144 (377)
T ss_pred             eCCcHHHHHHHHHHHHHhc-------------------------C--CCeEEEECCCcCCCcHHhhhccCCccccccCCC
Confidence            4899999999999999883                         4  778999999999999999999876544333333


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +..++       |      ++|      ++++++.+.      +++++||+||+|+.+|+++++++||++|+++|++
T Consensus       145 ~~~~~~~~-------~------~~d------~~~l~~~~~------~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~  199 (377)
T PRK02936        145 LLPGFTHV-------P------FND------IKALKEVMN------EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKK  199 (377)
T ss_pred             CCCCceEe-------C------CCC------HHHHHHhcc------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHH
Confidence            21 11111       1      123      455666553      4689999999999999999999999999999985

>KOG1403|consensus

Probab=99.78  E-value=8.5e-20  Score=144.36  Aligned_cols=130  Identities=18%  Similarity=0.256  Sum_probs=96.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +|||||||++||||||.|+                         +  +..+|.++++|||.....|.+|.....+.....
T Consensus       108 ~NSGSEANDLALRLAR~ft-------------------------k--hqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~  160 (452)
T KOG1403|consen  108 VNSGSEANDLALRLARNFT-------------------------K--HQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVA  160 (452)
T ss_pred             ecCCchhhHHHHHHHHhhc-------------------------c--cCceEEEechhccceeeeeeccceeccCCCCcC
Confidence            5899999999999999994                         3  778999999999999888888875433333332


Q ss_pred             CCC-CCcccCCC-CCCCCccchhhhh-HHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AFD-WPIASFPK-YKYPLEENERENK-AEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~~-~~~~p~p~-~~~~~~~~~~~~~-~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .++ ++..|.|+ |+.-++... +++ ..+..+.+.++++++.....+..|||||.|.+|+-||-+.||.+||+.+.+..
T Consensus       161 kpd~VHVAPcPDvyrGK~r~~~-~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~V  239 (452)
T KOG1403|consen  161 KPDYVHVAPCPDVYRGKFRDKM-YPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAV  239 (452)
T ss_pred             CCceeEecCCcccccccccccc-CCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHH
Confidence            333 34467776 554333211 111 12345677788888776656789999999999999999999999999998876


Q ss_pred             c
Q psy4805         158 K  158 (159)
Q Consensus       158 ~  158 (159)
                      +
T Consensus       240 r  240 (452)
T KOG1403|consen  240 R  240 (452)
T ss_pred             h
Confidence            4

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.78  E-value=2.4e-18  Score=142.40  Aligned_cols=115  Identities=24%  Similarity=0.340  Sum_probs=85.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||.|+..+ .|.+                +|  |.+||+|.++|||+|.+++++++.+..+..+.+
T Consensus       104 ~~SGs~A~e~al~~a~~~~~~~-~g~~----------------~~--~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~  164 (401)
T PRK00854        104 MNSGAEAVETAIKAVRKWGYEV-KGVP----------------EG--QAEIIVCADNFHGRTLSIVGFSTDPDARGGFGP  164 (401)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc-cCCC----------------CC--CceEEEECCCcCCccHHHHhccCCccccccCCC
Confidence            5899999999999999986433 1321                34  789999999999999999988876543332322


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +..++|+             +|      ++.|++.+.      ++++|||+||+++.+|++.+|++||++|+++|++
T Consensus       165 ~~~~~~~~~~-------------~d------~~~le~~i~------~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~  219 (401)
T PRK00854        165 FTPGFRVVPF-------------GD------AEALEAAIT------PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTA  219 (401)
T ss_pred             CCCCeEEeCC-------------CC------HHHHHHHhC------CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence            21 1112221             23      456666653      3689999999999999999999999999999985

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.75  E-value=7.8e-18  Score=138.44  Aligned_cols=108  Identities=28%  Similarity=0.341  Sum_probs=81.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||||||+.|||+||.++                         +  |.+||+++++|||++.+++++++...+...+.+
T Consensus        90 ~~SGseA~~~Al~~ar~~~-------------------------~--~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~  142 (375)
T PRK04260         90 CNSGAEANEAAIKIARKAT-------------------------G--KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGD  142 (375)
T ss_pred             cCccHHHHHHHHHHHHHhc-------------------------C--CCeEEEECCCcCcccHHHHhccCCcccCCCCCC
Confidence            4899999999999999873                         3  678999999999999999999876443332222


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+  ..+++    .+      ++|      ++.+++.+.      +++++||+||+++++|++++|++||++++++|++
T Consensus       143 ~~--~~~~~----~~------~~d------l~~l~~~l~------~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~  197 (375)
T PRK04260        143 GV--PHFSY----AI------FND------LNSVKALVN------KNTAAVMLELVQGESGVLPADKDFVKALADYCQE  197 (375)
T ss_pred             CC--CCeEE----eC------CCC------HHHHHHhcC------CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHH
Confidence            11  00110    01      123      566666552      4789999999999999999999999999999985

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.74  E-value=2e-17  Score=136.73  Aligned_cols=117  Identities=26%  Similarity=0.334  Sum_probs=84.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||.++..+ +|.+                ++  +.+||+++++|||++.+++++++....+..+.+
T Consensus        94 ~~SGs~A~e~al~~~~~~~~~~-~~~~----------------~~--~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~  154 (400)
T PTZ00125         94 MNSGAEAGETALKFARKWGYEV-KGIP----------------EN--QAKIIFCNGNFSGRTIGACSASTDPKCYNNFGP  154 (400)
T ss_pred             eCCcHHHHHHHHHHHHHHHHhc-cCCC----------------CC--CCeEEEECCCcCCccHHHHhhcCCcchhccCCC
Confidence            5899999999999999885432 1210                12  679999999999999999999875432222222


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ... .+.+.     +      ++|      ++++++.+.     .+++++||+||+|+.+|++.++++|+++|+++|++
T Consensus       155 ~~~-~~~~~-----~------~~d------~~~le~~l~-----~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~  210 (400)
T PTZ00125        155 FVP-GFELV-----D------YND------VEALEKLLQ-----DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKK  210 (400)
T ss_pred             CCC-CceEe-----C------CCC------HHHHHHHhC-----CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHH
Confidence            110 00111     1      123      567777774     24799999999999999999999999999999985

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.70  E-value=9.3e-17  Score=132.83  Aligned_cols=106  Identities=24%  Similarity=0.336  Sum_probs=79.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|++|.+                          |  |.+||.++++|||.+.+++++++.......+.+
T Consensus       109 ~~sgsea~~~al~~~~~~--------------------------g--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  160 (398)
T PRK03244        109 CNSGAEANEAAFKLARLT--------------------------G--RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP  160 (398)
T ss_pred             eCchHHHHHHHHHHHHHH--------------------------C--CCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence            589999999999999874                          3  678999999999999999999875433222222


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. .+..+|+             +|      ++.+++.+.      +++++||+||+|+.+|+++|+++|+++|+++|++
T Consensus       161 ~~~~~~~~~~-------------~d------~~~l~~~~~------~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~  215 (398)
T PRK03244        161 LPGGVEHVPY-------------GD------VDALAAAVD------DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDR  215 (398)
T ss_pred             CCCCceEeCC-------------CC------HHHHHHhhc------CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence            10 1111111             22      455666552      4799999999999999999999999999999985

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.70  E-value=6.3e-17  Score=135.79  Aligned_cols=105  Identities=17%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEE-cCCCCccchhhhhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSF-KGAFHGRTLGCLSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~-~~sYHG~T~ga~s~s~~~~~~~~~~   79 (159)
                      +||||||||+||||||.|+                         |  |.+||+| .++|||........+...    ...
T Consensus       110 ~~sGseA~e~AlklAr~~t-------------------------g--r~~i~~~~~~~~h~~~~~~~g~~~~~----~~~  158 (431)
T PRK06209        110 CKNGSDATSAAVRLARAYT-------------------------G--RDLVARCADHPFFSTDDWFIGTTPMS----AGI  158 (431)
T ss_pred             ecCHHHHHHHHHHHHHHHh-------------------------C--CCeEEEeccCccccccccccccCCCC----CCC
Confidence            5899999999999999994                         4  7899999 788887432211111000    000


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +.   ...+.+ ..++      ++|      ++++++++++.   ++++||||+||+||.    +||++||++|+++|++
T Consensus       159 ~~---~~~~~~-~~~~------~~d------~~~l~~~l~~~---~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~  215 (431)
T PRK06209        159 PA---SVSALT-VTFR------YND------IASLEALFEDH---PGRIACVILEPATAD----EPQDGFLHEVRRLCHE  215 (431)
T ss_pred             Ch---hHhccc-cccC------CCC------HHHHHHHHHhC---CCCEEEEEEccccCC----CCCHHHHHHHHHHHHH
Confidence            00   000000 1111      233      57778888753   468999999999976    7899999999999985

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.62  E-value=2.7e-15  Score=124.06  Aligned_cols=121  Identities=33%  Similarity=0.401  Sum_probs=87.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|++++|.++                         +  +.+||.++++|||++..++++++...+...+.+
T Consensus       102 ~~sgsea~~~al~~~~~~~-------------------------~--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  154 (413)
T cd00610         102 VNSGTEAVEAALKLARAYT-------------------------G--RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGP  154 (413)
T ss_pred             cCcHHHHHHHHHHHHHHHc-------------------------C--CCeEEEECCCcCCccHHHHHhcCCccccccCCC
Confidence            5899999999999999873                         3  678999999999999999998875433322221


Q ss_pred             C-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 A-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      . ..+..+|++....+        .......++.|++.+..+   ++++++||+||+++.+|+++++++|+++|+++|++
T Consensus       155 ~~~~~~~~~~~~~~~~--------~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~  223 (413)
T cd00610         155 LLPGVLHVPYPYRYRP--------PAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRK  223 (413)
T ss_pred             CCCCcEEeCCCccccc--------hhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            1 12223333210000        001122367787777653   46899999999999999999999999999999985

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.62  E-value=3.2e-15  Score=123.19  Aligned_cols=112  Identities=29%  Similarity=0.388  Sum_probs=82.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+||.++.+.  +                    ..+.+|++++++|||.+..++++++...++..+.+
T Consensus       102 ~~gg~eA~~~al~~a~~~~~~~--~--------------------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  159 (396)
T PRK02627        102 CNSGAEANEAAIKLARKYGHKK--G--------------------IEKPEIITAENSFHGRTLATLSATGQPKYQEGFEP  159 (396)
T ss_pred             CCCcHHHHHHHHHHHHHHhccc--C--------------------CCCCeEEEECCCcCcccHHHHHhcCCccccccCCC
Confidence            5899999999999999985321  1                    11478999999999999999999876533322222


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++..+|             ++|      ++++++.+.      +++++||+||+|+.+|+++++++|+++|+++|++
T Consensus       160 ~~~~~~~~~-------------~~d------~~~l~~~i~------~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~  214 (396)
T PRK02627        160 LVEGFIYVP-------------FND------IEALKAAIT------DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDE  214 (396)
T ss_pred             CCCCceEeC-------------CCC------HHHHHHhcC------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHH
Confidence            11 111111             123      556666652      4799999999999999999999999999999985

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.19  E-value=2.2e-10  Score=93.88  Aligned_cols=112  Identities=35%  Similarity=0.504  Sum_probs=78.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|++++|.++...  +                  +  ++.+||.+..+|||.+..+...++...+...+.+
T Consensus        90 ~~sg~~a~~~a~~~~~~~~~~~--~------------------~--~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~  147 (379)
T TIGR00707        90 CNSGAEANEAALKLARKYTGDK--G------------------K--EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEP  147 (379)
T ss_pred             eCCcHHHHHHHHHHHHHHhhcc--C------------------C--CCCeEEEECCCcCCccHHHHHhcCChhhhccCCC
Confidence            4799999999999999875321  1                  1  1578999999999999998887764322111111


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +..++       +      ++|      ++.+++.+.      .++.+|++||+++.+|+++++.+++++|.++|++
T Consensus       148 ~~~~~~~~-------~------~~d------~~~l~~~~~------~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~  202 (379)
T TIGR00707       148 LVPGFSYA-------P------YND------IESLKKAID------DETAAVIVEPIQGEGGVNPASAEFLKALREICKD  202 (379)
T ss_pred             CCCCceee-------C------CCC------HHHHHHHhh------hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHH
Confidence            10 00011       1      123      456666654      2578999999999999988899999999999974

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=98.78  E-value=1.2e-08  Score=84.66  Aligned_cols=97  Identities=16%  Similarity=0.125  Sum_probs=61.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      .+||++|++.|||+++.... .                     ++  +.+||+++++|||...      +.......+  
T Consensus       111 ~~sG~~a~~~ai~~~~~~~~-~---------------------~~--~~~vi~~~~~~H~s~~------~~~~~~~~~--  158 (402)
T PRK07505        111 FTSCSAAHLGILPLLASGHL-T---------------------GG--VPPHMVFDKNAHASLN------ILKGICADE--  158 (402)
T ss_pred             ECChHHHHHHHHHHHHhccc-C---------------------CC--CCCEEEEchhhhHhHH------hhhhhhhcC--
Confidence            37999999999999876321 0                     13  6689999999998321      111111110  


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                       ..+..+|+             +|      ++.+++.+..     ...+++|+||+++.|++++     +++|+++|++
T Consensus       159 -~~v~~~~~-------------~d------~~~l~~~~~~-----~~~~~vl~~p~~~~G~~~~-----~~~i~~l~~~  207 (402)
T PRK07505        159 -TEVETIDH-------------ND------LDALEDICKT-----NKTVAYVADGVYSMGGIAP-----VKELLRLQEK  207 (402)
T ss_pred             -CeEEEeCC-------------CC------HHHHHHHHhc-----CCCEEEEEecccccCCcCC-----HHHHHHHHHH
Confidence             11122222             22      4556666643     3579999999999977654     7889999974

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=98.52  E-value=2.1e-07  Score=77.44  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             CCCcchHHHHHHH-HHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYK-NIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~Alk-lA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~   79 (159)
                      ++||++||+.|++ +++.+                             +..+|.++..|||.+..++..++...      
T Consensus       111 ~~SG~~An~~ai~~l~~~~-----------------------------~g~~I~~~~~~H~s~~~~~~~~g~~~------  155 (406)
T PRK13393        111 FTSGYVSNWAALSTLGSRL-----------------------------PGCVILSDELNHASMIEGIRHSRAEK------  155 (406)
T ss_pred             eCCcHHHHHHHHHHhhcCC-----------------------------CCCEEEEccchhHHHHHHHHHcCCeE------
Confidence            4799999999999 56432                             23588999999999988877654210      


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                           ..+|.             +|      .+.+++.+....  ..++.+|++|++++..|.+.|    +++|+++|++
T Consensus       156 -----~~~~~-------------~d------~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~  205 (406)
T PRK13393        156 -----RIFRH-------------ND------PADLERKLSDLD--PHRPKLVAFESVYSMDGDIAP----IAEICDVAEK  205 (406)
T ss_pred             -----EEeCC-------------CC------HHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhC----HHHHHHHHHH
Confidence                 11121             12      234455554321  246789999999999998876    8999999974

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=98.07  E-value=8.9e-06  Score=67.50  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      .+||++||+.||++++.+.                            +..+|..+..||+.+...+..++...       
T Consensus       111 ~~sG~~an~~ai~~l~~~~----------------------------~~~~v~~~~~~h~s~~~~~~~~g~~~-------  155 (402)
T TIGR01821       111 FTSGYVANDATLATLAKII----------------------------PGCVIFSDELNHASMIEGIRHSGAEK-------  155 (402)
T ss_pred             ECchHHHHHHHHHHhhCCC----------------------------CCCEEEEcchHhHHHHHHHHHcCCeE-------
Confidence            3799999999999886431                            23577777889999877766554221       


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          ..++.             +|      .+++++++...  ..+.+..|++|++++..|.+.|    +++|+++|++
T Consensus       156 ----~~~~~-------------~d------~~~l~~~l~~~--~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~  205 (402)
T TIGR01821       156 ----FIFRH-------------ND------VAHLEKLLQSV--DPNRPKIIAFESVYSMDGDIAP----IEEICDLADK  205 (402)
T ss_pred             ----EEECC-------------CC------HHHHHHHHHhc--cCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHH
Confidence                00111             12      34455666543  1235789999999999998765    8899999974

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=97.72  E-value=9.1e-05  Score=61.51  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+.++++++..  ..+++.+|++|++++..|.+.+    +++|+++|++
T Consensus       164 ~~~le~~l~~~--~~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~  206 (407)
T PRK09064        164 VAHLEELLAAA--DPDRPKLIAFESVYSMDGDIAP----IAEICDLADK  206 (407)
T ss_pred             HHHHHHHHHhc--cCCCCeEEEEeCCCCCCccccC----HHHHHHHHHH
Confidence            34566666542  1246789999999999998765    8899999974

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=97.61  E-value=0.00033  Score=57.75  Aligned_cols=100  Identities=10%  Similarity=-0.014  Sum_probs=62.1

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|+++.+.++++++..                         ++  +...|.+...|||.+..++.+.+...   +    
T Consensus        88 ~~g~~~~~~~~~~~~~~-------------------------~~--~gd~Vl~~~~~h~~~~~~~~~~~~~~---g----  133 (398)
T cd00613          88 DEATAAAEAAGLAAIRA-------------------------YH--KRNKVLVPDSAHPTNPAVARTRGEPL---G----  133 (398)
T ss_pred             CchHHHHHHHHHHHHhc-------------------------cc--CCCEEEEcCccCcchHHHHHHhcccC---C----
Confidence            46777888888887643                         11  22455577889999998888776321   0    


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..+..+|.+..   .  .   .+      ++++++.+.      +++++||+++.. ..|++   .++|++|+++|++
T Consensus       134 ~~~~~v~~~~~---~--~---~d------~~~l~~~i~------~~t~~viv~~~~-~~G~~---~~~l~~i~~la~~  187 (398)
T cd00613         134 IEVVEVPSDEG---G--T---VD------LEALKEEVS------EEVAALMVQYPN-TLGVF---EDLIKEIADIAHS  187 (398)
T ss_pred             cEEEEeccCCC---C--C---cC------HHHHHHhcC------CCeEEEEEECCC-CCcee---cchHHHHHHHHHh
Confidence            11122332110   0  0   12      455655542      468999999865 56876   3789999999985

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PLN02822 serine palmitoyltransferase

Probab=97.54  E-value=0.00042  Score=59.32  Aligned_cols=78  Identities=17%  Similarity=0.200  Sum_probs=48.6

Q ss_pred             CceEEEEcCCCCccchhhhhcCCCccccccCCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccC---
Q psy4805          48 NLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKK---  124 (159)
Q Consensus        48 r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~---  124 (159)
                      +..+|.++..||+.+..++.+++...           ..++.             +|      .+.++..++.....   
T Consensus       192 ~gd~Ii~d~~~H~s~~~~~~ls~~~~-----------~~~~~-------------nd------~~~l~~~l~~~~~~~~~  241 (481)
T PLN02822        192 KGDIIVADEGVHWGIQNGLYLSRSTI-----------VYFKH-------------ND------MESLRNTLEKLTAENKR  241 (481)
T ss_pred             CCCEEEEeCCccHHHHHHHHHcCCeE-----------EEECC-------------CC------HHHHHHHHHHHhhhhcc
Confidence            55677799999999887777775321           11111             12      11222222221100   


Q ss_pred             CCCe-EEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         125 GTPV-AGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       125 ~~~v-AAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..++ ++||+|++++..|.+.+    |++|+++|++
T Consensus       242 ~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k  273 (481)
T PLN02822        242 KKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEK  273 (481)
T ss_pred             cCCCcEEEEEecCCCCCCCccC----HHHHHHHHHH
Confidence            1234 89999999999998876    8999999975

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=96.99  E-value=0.0018  Score=53.96  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=24.8

Q ss_pred             CCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++..+|++|++.+..|.+.+    +++|+++|++
T Consensus       177 ~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~  206 (410)
T PRK13392        177 DRPKLIAFESVYSMDGDIAP----IEAICDLADR  206 (410)
T ss_pred             CCCEEEEEeCCCCCCccccc----HHHHHHHHHH
Confidence            46788999999998898765    8888888874

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=96.69  E-value=0.0087  Score=49.23  Aligned_cols=78  Identities=22%  Similarity=0.205  Sum_probs=50.1

Q ss_pred             CceEEEEcCCCCccchhhhhcCCCccccccCCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCC
Q psy4805          48 NLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTP  127 (159)
Q Consensus        48 r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~  127 (159)
                      +..+|.++..+|+.++.++....  ...           ++++.           +|      ++++++++.........
T Consensus        94 ~~d~ii~d~~~H~sv~~~~~~~~--~~~-----------~~~~~-----------~d------~~~l~~~l~~~~~~~~~  143 (370)
T PRK05937         94 VTDYVLWDEQVHISVVYSLSVIS--GWH-----------QSFRH-----------ND------LDHLESLLESCRQRSFG  143 (370)
T ss_pred             CCCEEEEEhhhhHHHHHHHHHcC--Cce-----------EEecC-----------CC------HHHHHHHHHhhhccCCC
Confidence            45788899999999988776532  110           11211           12      45566666643111123


Q ss_pred             eEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         128 VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       128 vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      -..|++|++.+..|.+.|    +++|.++|++
T Consensus       144 ~~~v~v~~v~s~~G~i~p----l~eI~~l~~~  171 (370)
T PRK05937        144 RIFIFVCSVYSFKGTLAP----LEQIIALSKK  171 (370)
T ss_pred             cEEEEEecCCCCCCCccC----HHHHHHHHHH
Confidence            446889999999998876    8888888874

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=96.68  E-value=0.01  Score=48.41  Aligned_cols=42  Identities=26%  Similarity=0.380  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.+...   ....+.+++++++...|.+.+    +++|.++|++
T Consensus       155 ~~~l~~~i~~~---~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~  196 (385)
T PRK05958        155 VDALEALLAKW---RAGRALIVTESVFSMDGDLAP----LAELVALARR  196 (385)
T ss_pred             HHHHHHHHHhc---cCCCeEEEEEecccCCCCcCC----HHHHHHHHHH
Confidence            45566666542   235789999999887786543    8899999874

>PRK07179 hypothetical protein; Provisional

Probab=96.56  E-value=0.012  Score=49.04  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+..     ...++|++|++++..|.+.|    +++|.++|++
T Consensus       170 ~~~l~~~l~~-----~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~  209 (407)
T PRK07179        170 VDHLRRQIER-----HGPGIIVVDSVYSTTGTIAP----LADIVDIAEE  209 (407)
T ss_pred             HHHHHHHHHh-----cCCeEEEECCCCCCCCcccc----HHHHHHHHHH
Confidence            5667777753     24678999999999998776    7889999874

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=96.46  E-value=0.012  Score=48.16  Aligned_cols=42  Identities=12%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       112 ~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +.+++.+....  ..+..+|++++++...|.+.+    +++|.++|++
T Consensus       150 ~~l~~~l~~~~--~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~  191 (385)
T TIGR01825       150 DDLDRVLRENP--SYGKKLIVTDGVFSMDGDVAP----LPEIVELAER  191 (385)
T ss_pred             HHHHHHHHhhc--cCCCeEEEEecCCcCCCCccC----HHHHHHHHHH
Confidence            34555554421  236789999999998887654    6888888874

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=95.71  E-value=0.039  Score=39.09  Aligned_cols=31  Identities=32%  Similarity=0.405  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         125 GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       125 ~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..+++++++++.....|...+.    ++|.++|++
T Consensus        90 ~~~~~~v~~~~~~~~~g~~~~~----~~l~~~~~~  120 (170)
T cd01494          90 KPNVALIVITPNTTSGGVLVPL----KEIRKIAKE  120 (170)
T ss_pred             cCceEEEEEecCcCCCCeEcCH----HHHHHHHHH
Confidence            3589999999999888876653    777777763

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02721 threonine aldolase

Probab=95.27  E-value=0.14  Score=41.26  Aligned_cols=49  Identities=16%  Similarity=0.176  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhccC-CCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKK-GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~-~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.+.+.... ..+..+|++|+.+.+.|-..++.+.+++|.++|++
T Consensus       120 ~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~  169 (353)
T PLN02721        120 LDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKR  169 (353)
T ss_pred             HHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHH
Confidence            56677777643110 14678999999887744456788999999999974

>cd00609 AAT_like Aspartate aminotransferase family

Probab=94.49  E-value=0.11  Score=41.27  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=27.8

Q ss_pred             CCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .++.+|++++.+...|++ .|.+.+++|.++|++
T Consensus       131 ~~~~~v~i~~~~~~tG~~-~~~~~l~~l~~~~~~  163 (350)
T cd00609         131 PKTKLLYLNNPNNPTGAV-LSEEELEELAELAKK  163 (350)
T ss_pred             ccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHh
Confidence            578999999988778875 578899999999974

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=93.82  E-value=0.26  Score=39.50  Aligned_cols=43  Identities=26%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       112 ~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +.+++++.... .+...+.|++++++...|+..+    +++|.++|++
T Consensus       118 ~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~  160 (349)
T cd06454         118 EDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP----LPELVDLAKK  160 (349)
T ss_pred             HHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC----HHHHHHHHHH
Confidence            34555665421 1246789999999888887643    6888899875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=93.65  E-value=0.53  Score=37.81  Aligned_cols=43  Identities=26%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.+....  ..+.+.++++++....|.+.+    +++|.++|++
T Consensus       132 ~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~  174 (360)
T TIGR00858       132 VEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAP----LPQLVALAER  174 (360)
T ss_pred             HHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcC----HHHHHHHHHH
Confidence            455666665421  135688888888776675543    6888888874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PLN02880 tyrosine decarboxylase

Probab=92.69  E-value=1.4  Score=38.11  Aligned_cols=115  Identities=9%  Similarity=-0.113  Sum_probs=60.4

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      .+|||||-.||..||.+..+. .|.                 .+ .+..+|.....-|-.-.=+..+.|....       
T Consensus       153 sggs~anl~al~~AR~~~~~~-~g~-----------------~~-~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~-------  206 (490)
T PLN02880        153 GTASEAVLVVLLAARDRVLRK-VGK-----------------NA-LEKLVVYASDQTHSALQKACQIAGIHPE-------  206 (490)
T ss_pred             CccHHHHHHHHHHHHHHHHHH-hcc-----------------cc-cCCeEEEEcCCchHHHHHHHHHcCCCHH-------
Confidence            578999999999999876433 121                 11 1223444444347665555555554311       


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                       .+..+|.... ..+.     -+      .+.|++.|++....+..+.+||.--..-..|.+.|    +++|.++|++
T Consensus       207 -~v~~Vp~d~~-~~~~-----md------~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~  267 (490)
T PLN02880        207 -NCRLLKTDSS-TNYA-----LA------PELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKS  267 (490)
T ss_pred             -HEEEeecCCC-cCCc-----CC------HHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHH
Confidence             1122333210 0011     02      45666666543222345667776655555566654    6778888864

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=92.29  E-value=0.62  Score=37.77  Aligned_cols=18  Identities=17%  Similarity=0.006  Sum_probs=14.7

Q ss_pred             CCCcchHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIW   18 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~   18 (159)
                      +++|+||+..|++.++..
T Consensus        82 ~~ggt~a~~~a~~~~~~~   99 (371)
T PRK13520         82 TSGGTEANIQAVRAARNL   99 (371)
T ss_pred             ecCcHHHHHHHHHHHHhh
Confidence            368999999999988654

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.23  E-value=0.43  Score=40.36  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      +++.+|++|....-.|.+.+    +++|.++|++
T Consensus       133 ~e~le~ai~------~~tklV~lesp~NPtG~v~d----l~~I~~la~~  171 (425)
T PRK06084        133 IAALEALID------ERTKAVFCESIGNPAGNIID----IQALADAAHR  171 (425)
T ss_pred             HHHHHHHhc------cCCcEEEEeCCCCCCCeecC----HHHHHHHHHH
Confidence            455666664      24678899988777776654    6888888864

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=92.07  E-value=0.57  Score=38.30  Aligned_cols=45  Identities=18%  Similarity=0.266  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+.+++.+........++.+|++++++...|.+.    .+++|.++|++
T Consensus       158 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~----~~~~l~~la~~  202 (397)
T PRK06939        158 MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA----PLPEICDLADK  202 (397)
T ss_pred             HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC----CHHHHHHHHHH
Confidence            3445555543211123678899998988878633    48888998874

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=91.60  E-value=0.26  Score=41.49  Aligned_cols=39  Identities=13%  Similarity=0.201  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      ++..+|++|....-.|.+. +   +++|.++|++
T Consensus       132 ~~~l~~~l~------~~t~~V~le~p~NPtg~v~-d---l~~I~~la~~  170 (418)
T TIGR01326       132 PEEFEKAID------ENTKAVFAETIGNPAINVP-D---IEAIAEVAHA  170 (418)
T ss_pred             HHHHHHhcC------cCCeEEEEECCCCCCCeec-C---HHHHHHHHHH
Confidence            455555553      3567888887766556544 3   6788888864

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=91.45  E-value=1.9  Score=40.26  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++||.|.-++|..+|.|...+  |+                  +  ++.++....+-||.-..+....|..         
T Consensus       553 ~aGA~gE~agL~aiR~y~~~r--ge------------------~--~R~~vlip~saHgtnPasa~~~G~~---------  601 (939)
T TIGR00461       553 NSGAQGEYAGLRVIRSYHESR--GE------------------N--HRNICLIPVSAHGTNPASAAMAGMQ---------  601 (939)
T ss_pred             chHHHHHHHHHHHHHHHHHhc--CC------------------C--CCCEEEEEccccCcCHHHHHHCCCE---------
Confidence            467777777899999987544  43                  1  4466777788999987765554421         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|..    ....    -|      +++|++.++.+   ++++++|++-=..- -|++.++   ++++.++|++
T Consensus       602 --Vv~V~~d----~~G~----iD------le~L~~~i~~~---~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~  656 (939)
T TIGR00461       602 --VVPVNCD----QDGN----ID------LVDLKNKAEQH---GDELAAVMVTYPST-HGVFEPT---IQHACDIVHS  656 (939)
T ss_pred             --EEEeccC----CCCC----cC------HHHHHHHHhhc---CCceEEEEEEeCCc-Cceeccc---HHHHHHHHHH
Confidence              1122221    0000    12      67777777653   35788888753222 4666554   6667776653

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=91.45  E-value=0.38  Score=40.67  Aligned_cols=39  Identities=23%  Similarity=0.393  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+.+++.+.      .++.+|++|....-.|.+.+    +++|.++|++
T Consensus       138 ~~~l~~ai~------~~tklV~vesp~NptG~v~d----l~~I~~la~~  176 (427)
T PRK05994        138 PASFERAIT------PRTKAIFIESIANPGGTVTD----IAAIAEVAHR  176 (427)
T ss_pred             HHHHHHhcC------cCCeEEEEECCCCCCCeecC----HHHHHHHHHH
Confidence            344555553      25778889987777776654    6788888864

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=91.34  E-value=0.42  Score=39.35  Aligned_cols=39  Identities=10%  Similarity=0.088  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      .++.+|++|.+..-.|.+.+    +++|.++|++
T Consensus       115 ~~~l~~~i~------~~~~~v~~e~~~np~g~~~d----l~~i~~la~~  153 (369)
T cd00614         115 PEALEAAIK------PETKLVYVESPTNPTLKVVD----IEAIAELAHE  153 (369)
T ss_pred             HHHHHHhcC------CCCeEEEEECCCCCCCeecC----HHHHHHHHHH
Confidence            445555553      25678999988877776554    7788888864

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=91.00  E-value=0.62  Score=37.46  Aligned_cols=48  Identities=15%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccC-CCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSE-GGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~-gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.....-..+++.|.+|--.-. || .+++.+.+++|+++|++
T Consensus       108 ~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG-~~~s~~el~ai~~~a~~  156 (290)
T PF01212_consen  108 PEDLEAAIEEHGAHHPQPAVVSLENTTELAGG-TVYSLEELRAISELARE  156 (290)
T ss_dssp             HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTS-B---HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCccEEEEEecCcCCCC-eeCCHHHHHHHHHHHHh
Confidence            56677777764211357999999965544 45 56788999999999984

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=90.05  E-value=0.91  Score=37.16  Aligned_cols=39  Identities=26%  Similarity=0.278  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+++++.+.      ++...+++.-++...|.+.+    +++|.++|++
T Consensus       126 ~~~l~~~i~------~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~  164 (379)
T TIGR03402       126 LEELRAAIT------DDTALVSVMWANNETGTIFP----IEEIGEIAKE  164 (379)
T ss_pred             HHHHHHhcC------CCcEEEEEEcccCCeeeccc----HHHHHHHHHH
Confidence            455555553      24566667767777777665    3567777764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=89.94  E-value=0.59  Score=38.94  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=24.9

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +...||+||+++.+|.+++    +++++++|++
T Consensus       138 ~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~  166 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAP----LKELVALKEE  166 (392)
T ss_pred             CcEEEEEcCCcCCCCcccC----HHHHHHHHHH
Confidence            4578999999999998876    8899999975

>PRK12566 glycine dehydrogenase; Provisional

Probab=89.34  E-value=1.3  Score=41.23  Aligned_cols=103  Identities=12%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +||+.|.-++|...|.|+..+  |+                 ++  |+ ++....+=||....++...|..         
T Consensus       566 ~sGA~gE~A~Lmair~yh~~~--Ge-----------------~~--r~-~vLIp~saHgtNpasa~~~Gie---------  614 (954)
T PRK12566        566 NSGAQGEYAGLLAIRRYHRSR--GQ-----------------SQ--RD-ICLIPSSAHGTNPASAQMAGMR---------  614 (954)
T ss_pred             CchHHHHHHHHHHHHHHHHhc--CC-----------------CC--CC-EEEecccccccCHHHHHHCCCE---------
Confidence            578888878888888887665  54                 23  44 4555557787776654443321         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                        +..+|..    +.. .   -|      +++|++.+++.   .++++||++--... +|++.   .-+++|.++|+
T Consensus       615 --Vv~Vp~D----~~G-~---iD------le~L~a~I~~~---~~~laaVmiT~Pnt-~Gv~e---~~V~eI~~iah  668 (954)
T PRK12566        615 --VVIVECD----PDG-N---VD------LDDLKAKAAAA---GDRLSCLMITYPST-HGVYE---EGIREICEVVH  668 (954)
T ss_pred             --EEEeccC----CCC-C---cC------HHHHHHHhhcc---CCCEEEEEEEecCc-Cceec---chHHHHHHHHH
Confidence              1122221    000 0   12      67788887644   46899888864333 34432   34566666665

>PLN02955 8-amino-7-oxononanoate synthase

Probab=89.32  E-value=0.67  Score=39.93  Aligned_cols=42  Identities=19%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.|+++++.+   .++.+.||+|+|.+..|.+.|    |++|++||++
T Consensus       236 ~~~Le~~L~~~---~~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~  277 (476)
T PLN02955        236 MYHLNSLLSSC---KMKRKVVVTDSLFSMDGDFAP----MEELSQLRKK  277 (476)
T ss_pred             HHHHHHHHHhC---CCCceEEEEeCCCCCCCCcCC----HHHHHHHHHH
Confidence            67788888765   345688999999998888766    8888888864

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=89.20  E-value=1.2  Score=37.91  Aligned_cols=36  Identities=8%  Similarity=0.176  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.+.      +++.+||+.+..|.       +..+++|+++|++
T Consensus       149 ~~~le~~i~------~~tkaVi~~~~~G~-------p~dl~~I~~la~~  184 (438)
T PRK15407        149 ASLLEAAVS------PKTKAIMIAHTLGN-------PFDLAAVKAFCDK  184 (438)
T ss_pred             HHHHHHHcC------cCCeEEEEeCCCCC-------hhhHHHHHHHHHH
Confidence            455665553      36788999887553       3468999999974

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=88.73  E-value=4.4  Score=32.41  Aligned_cols=18  Identities=28%  Similarity=-0.134  Sum_probs=15.5

Q ss_pred             CCCcchHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIW   18 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~   18 (159)
                      +++|++|+..|++.++..
T Consensus        63 t~ggt~a~~~al~~~~~~   80 (345)
T cd06450          63 TSGGSESNLLALLAARDR   80 (345)
T ss_pred             eCChhHHHHHHHHHHHHH
Confidence            478999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PLN03032 serine decarboxylase; Provisional

Probab=87.91  E-value=5  Score=33.45  Aligned_cols=18  Identities=17%  Similarity=0.012  Sum_probs=15.6

Q ss_pred             CCCcchHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIW   18 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~   18 (159)
                      +.+|||||-.|++.||.+
T Consensus        91 TsGGTEaNl~al~~ar~~  108 (374)
T PLN03032         91 TTCGTEGNLHGILVGREV  108 (374)
T ss_pred             eCchHHHHHHHHHHHHHh
Confidence            468999999999999875

>PLN02651 cysteine desulfurase

Probab=86.96  E-value=1.9  Score=35.21  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .+++++.+.      ++...+++.-+....|++.+    +++|.++|+
T Consensus       128 ~~~l~~~i~------~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~  165 (364)
T PLN02651        128 LDELAAAIR------PDTALVSVMAVNNEIGVIQP----VEEIGELCR  165 (364)
T ss_pred             HHHHHHhcC------CCcEEEEEECCCCCceeccc----HHHHHHHHH
Confidence            345555553      24566677666666776655    556666665

>PLN02590 probable tyrosine decarboxylase

Probab=86.85  E-value=8.7  Score=33.74  Aligned_cols=20  Identities=5%  Similarity=-0.371  Sum_probs=17.2

Q ss_pred             CCCcchHHHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIWYQ   20 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~   20 (159)
                      +.+|||||-.||..||.+..
T Consensus       200 ~sGgSeAnl~al~aAR~~~~  219 (539)
T PLN02590        200 QGTGCEAVLVVVLAARDRIL  219 (539)
T ss_pred             cCchHHHHHHHHHHHHHHHH
Confidence            35799999999999999754

>PLN02263 serine decarboxylase

Probab=86.68  E-value=6.8  Score=33.80  Aligned_cols=18  Identities=17%  Similarity=-0.018  Sum_probs=16.3

Q ss_pred             CCCcchHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIW   18 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~   18 (159)
                      +++|||||-.||+.||.+
T Consensus       158 tsGGTEaNL~Al~aARe~  175 (470)
T PLN02263        158 TNCGTEGNLHGILVGREV  175 (470)
T ss_pred             eCcHHHHHHHHHHHHHhh
Confidence            468999999999999987

>PRK14012 cysteine desulfurase; Provisional

Probab=86.17  E-value=2.2  Score=35.38  Aligned_cols=39  Identities=13%  Similarity=0.199  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+.|++.+.      .+..++++.-++...|++.+    +++|.++|++
T Consensus       134 ~~~l~~~i~------~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~  172 (404)
T PRK14012        134 LEKLEAAMR------DDTILVSIMHVNNEIGVIQD----IAAIGEICRE  172 (404)
T ss_pred             HHHHHHhcC------CCCEEEEEECcCCCccchhh----HHHHHHHHHH
Confidence            455555553      23456777777766776654    5677777753

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=86.04  E-value=1.4  Score=36.52  Aligned_cols=29  Identities=14%  Similarity=0.084  Sum_probs=19.6

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +..+|++|......|.+.    -+++|.++|++
T Consensus       139 ~tklV~le~p~np~g~~~----dl~~I~~la~~  167 (380)
T TIGR01325       139 NTKLVFVETPSNPLGELV----DIAALAELAHA  167 (380)
T ss_pred             CceEEEEECCCCCCCeee----CHHHHHHHHHH
Confidence            567888887665555443    26788888764

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=85.15  E-value=2.5  Score=35.05  Aligned_cols=29  Identities=10%  Similarity=0.137  Sum_probs=19.3

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +...+++..++...|++.+    +++|.++|++
T Consensus       142 ~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~  170 (402)
T TIGR02006       142 DTILVSIMHVNNEIGVIQD----IAAIGEICRE  170 (402)
T ss_pred             CCEEEEEECCCcCceeccc----HHHHHHHHHH
Confidence            4567777777777777654    5666776653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=85.04  E-value=3.7  Score=32.81  Aligned_cols=14  Identities=14%  Similarity=0.207  Sum_probs=9.3

Q ss_pred             CCcchHHHHHHHHH
Q psy4805           2 MCGSCSNENAYKNI   15 (159)
Q Consensus         2 ~sGseA~e~AlklA   15 (159)
                      .+||++++.++...
T Consensus        57 ~~gt~~l~~~~~~~   70 (355)
T TIGR03301        57 GSGTFAVEATIGSL   70 (355)
T ss_pred             CCcHHHHHHHHHhc
Confidence            46777777777543

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=84.84  E-value=1.6  Score=35.05  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccch
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL   63 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~   63 (159)
                      ++||++|++.+++..+.       .                  +   ...||....+||+...
T Consensus        39 ~~sgt~al~~~l~~l~~-------~------------------~---gd~vl~~~~~~~~~~~   73 (352)
T cd00616          39 VSSGTAALHLALRALGI-------G------------------P---GDEVIVPSFTFVATAN   73 (352)
T ss_pred             ECCHHHHHHHHHHHcCC-------C------------------C---CCEEEeCCcchHHHHH
Confidence            36899999998875521       1                  1   4579999999987643

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=84.82  E-value=5.4  Score=31.72  Aligned_cols=47  Identities=13%  Similarity=0.125  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhcc-CCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNK-KGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~-~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+..... ...+..+|+++....-||++  +...+++|.++|++
T Consensus       110 ~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~--~~~~l~~i~~~~~~  157 (338)
T cd06502         110 PEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVY--PLDELKAISALAKE  157 (338)
T ss_pred             HHHHHHHhhccCCCcCCcceEEEEEeecCCcccc--CHHHHHHHHHHHHH
Confidence            4566666653100 01256778888655555544  78899999999964

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=84.34  E-value=13  Score=32.47  Aligned_cols=19  Identities=16%  Similarity=-0.088  Sum_probs=16.8

Q ss_pred             CCCcchHHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIWY   19 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~   19 (159)
                      +.+||+||-.||..||...
T Consensus       165 tsGGS~ANl~Al~~AR~~~  183 (522)
T TIGR03799       165 CSGGTVANITALWVARNRL  183 (522)
T ss_pred             cCchHHHHHHHHHHHHHHh
Confidence            4689999999999999874

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK05367 glycine dehydrogenase; Provisional

Probab=84.20  E-value=6.2  Score=37.05  Aligned_cols=47  Identities=13%  Similarity=0.185  Sum_probs=30.4

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTH   70 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~   70 (159)
                      ++||.|+..+|..+|.|...+  |.                  +  ++.+|....+=||....++...|
T Consensus       565 ~~ga~ge~agL~a~r~~~~~~--G~------------------~--~r~~vlis~~aH~snp~sa~~~G  611 (954)
T PRK05367        565 NAGAQGEYAGLLAIRAYHESR--GE------------------G--HRDVCLIPSSAHGTNPASAVMAG  611 (954)
T ss_pred             cHHHHHHHHHHHHHHHHhhcc--CC------------------C--CCCEEEEEchhhhhhHHHHHHCC
Confidence            568888888898888775433  32                  1  33455566777888776655544

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=83.29  E-value=12  Score=35.24  Aligned_cols=103  Identities=12%  Similarity=0.112  Sum_probs=60.7

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      |+|+.+-++-+.++|.|.+.+  |.                  +  ++.+|...-+=||.-..++...|..         
T Consensus       591 naga~ge~a~~~vi~~~~~~~--Gd------------------~--~r~~vli~~~aH~sn~a~a~~~G~~---------  639 (993)
T PLN02414        591 NAGAAGEYAGLMVIRAYHLSR--GD------------------H--HRNVCIIPVSAHGTNPASAAMCGMK---------  639 (993)
T ss_pred             CCcHHHHHHHHHHHHHHHhcc--CC------------------C--CCCEEEeCCCcCccCHHHHHHCCCE---------
Confidence            567777777777888885432  32                  2  3456666778899988777664321         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                        +..+|...    ..    .-|      +++|++.+..+   .+++++|++-=....||++.+    +++|.++|+
T Consensus       640 --vv~v~~d~----~G----~vD------le~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah  693 (993)
T PLN02414        640 --IVVVGTDA----KG----NIN------IEELRKAAEAH---KDNLAALMVTYPSTHGVYEEG----IDEICDIIH  693 (993)
T ss_pred             --EEEeccCC----CC----CcC------HHHHHHHHhcc---CCCeEEEEEECCCccccccch----HHHHHHHHH
Confidence              22233311    00    012      67787887643   347888888655555666543    556666654

>PRK07777 aminotransferase; Validated

Probab=82.91  E-value=5.6  Score=32.64  Aligned_cols=42  Identities=10%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      .++.+|++...+.-.|.+. +.+.+++|.++|++
T Consensus       149 ~~~l~~~~~------~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~  190 (387)
T PRK07777        149 LDALRAAVT------PRTRALIVNSPHNPTGTVL-TAAELAAIAELAVE  190 (387)
T ss_pred             HHHHHHhcC------cccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHh
Confidence            455655543      2456777776677778755 78899999999974

>PRK02769 histidine decarboxylase; Provisional

Probab=81.54  E-value=16  Score=30.43  Aligned_cols=18  Identities=11%  Similarity=-0.222  Sum_probs=14.8

Q ss_pred             CCCcchHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIW   18 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~   18 (159)
                      +++|||||-.|+..||.+
T Consensus        90 TsGgTean~~a~~~ar~~  107 (380)
T PRK02769         90 TNGGTEGNLYGCYLAREL  107 (380)
T ss_pred             ecChHHHHHHHHHHHHHh
Confidence            357899999999998875

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=80.60  E-value=4  Score=34.88  Aligned_cols=48  Identities=15%  Similarity=0.183  Sum_probs=38.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHS   71 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~   71 (159)
                      |+|+..=-+.|-+.|+|+..+  |+                  +  .+.++-...|=||.-..+.++.|.
T Consensus       132 ~AGAqGE~aGll~Ir~YHe~r--G~------------------~--~R~~~LIP~SAHGTNPASAam~G~  179 (496)
T COG1003         132 NAGAQGEYAGLLAIRAYHESR--GE------------------G--HRNICLIPDSAHGTNPASAAMAGF  179 (496)
T ss_pred             CCCcchhhHHHHHHHHHHHHc--CC------------------C--cCcEEEeeccccCCChhhHhhcCc
Confidence            578888888999999998776  54                  2  566777888999999888887764

>KOG1549|consensus

Probab=80.56  E-value=6.5  Score=33.47  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.|+      .+..+|++.-+...-|+..|    +++|-++|++
T Consensus       171 ~~~~~~~i~------~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~  209 (428)
T KOG1549|consen  171 ISKLREAIR------SKTRLVSIMHVNNEIGVLQP----VKEIVKICRE  209 (428)
T ss_pred             HHHHHHhcC------CCceEEEEEecccCcccccc----HHHHHHHhCc
Confidence            566666664      47889999999999998877    5666667764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=80.23  E-value=4.3  Score=34.76  Aligned_cols=47  Identities=26%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.|++.|...  +++++.+||++.-....|-.+.+.+.+++|+++|++
T Consensus       163 ~e~Le~~i~~~--~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~  209 (460)
T PRK13238        163 LEKLEALIEEV--GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKK  209 (460)
T ss_pred             HHHHHHHHhhc--CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            67788888653  135789999996555544346678999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		4e-60
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		9e-09
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		1e-08
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		1e-08
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		5e-08
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		2e-07
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		1e-06
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		5e-04

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score =  226 bits (576), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 105/159 (66%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M CGSCSNENA+K IF+WY++K+RG  S F+KEE E+ MINQAPG P+ SILSF GAFHG
Sbjct: 133 MACGSCSNENAFKTIFMWYRSKERG-QSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 191
Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
           RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPL             CL EVEDLI K
Sbjct: 192 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 251
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 252 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 290

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
           G+ + ENA K  F W                   S  NQA G   A    +L  +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
           R+   LS T++K       P FDWP    P  +  L               A        
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           +  +   +A  V EPIQ EGGD H    FF  ++++
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMREL 260

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
           G+ + ENA K  F W                   S  NQA G   A    +L  +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
           R+   LS T++K       P FDWP    P  +  L               A        
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           +  +   +A  V EPIQ EGGD H    FF  ++++
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMREL 260

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 60/156 (38%), Gaps = 26/156 (16%)
Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
           G+ + ENA K  F W                   S  NQA G   A    +L  +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
           R+   LS T++K       P FDWP    P  +  L               A        
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           +  +   +A  V EPIQ EGGD H    FF  ++++
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMREL 260

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 59/156 (37%), Gaps = 26/156 (16%)
Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG---APNLSILSFKGAFHG 60
           G+ + ENA K  F W                   S  NQA G   A    +L  +GAFHG
Sbjct: 128 GALAVENALKAAFDW------------------KSRHNQAHGIDPALGTQVLHLRGAFHG 169
Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCLAEVEDLITK 120
           R+   LS T++K       P FDWP    P  +  L               A        
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR-----AA 224
Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           +  +   +A  V EPIQ  GGD H    FF  ++++
Sbjct: 225 FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMREL 260

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFP---KYKYPLXXXXXXXXXXX 107
           I++F G FHGRT G +S T SK + +  +  F   +   P    Y+ P            
Sbjct: 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL 191
Query: 108 XXCLAE-VEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
              + E +ED I         VAGI  EPIQ EGG       FF +LQK+ KK
Sbjct: 192 VNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKK 244

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 24/108 (22%)
Query: 52  LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
           +SF+ +FHGRT G LS T     HK     F+ P+   P + Y                 
Sbjct: 121 ISFENSFHGRTYGSLSATGQPKFHK----GFE-PLV--PGFSY----------------- 156
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           A++ D+ + Y       AGI++E IQ EGG N  S  F  +LQ+I K+
Sbjct: 157 AKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE 204

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 24/105 (22%)
Query: 52  LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLXXXXXXXXXXXXXCL 111
           ++FK +FHGRTLG LS T ++                  KY+ P               +
Sbjct: 128 IAFKHSFHGRTLGALSLTANE------------------KYQKPFKPLISGVKFAKYNDI 169
Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           + VE L+ +          I++E +Q EGG N  +  F++ L+K+
Sbjct: 170 SSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKL 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-79
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	9e-59
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	3e-18
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	9e-18
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	3e-17
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	9e-16
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	2e-15
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	4e-14
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	6e-12
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	6e-12
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	6e-12
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	9e-12
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	5e-10
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-09
1z7d_A	433	Ornithine aminotransferase; structural genomics co	3e-08
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	6e-08
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	8e-08
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	1e-07
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	3e-07
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	5e-07
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	7e-07
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	1e-06
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	2e-06
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	4e-06
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	6e-06
3hmu_A	472	Aminotransferase, class III; structural genomics,	1e-05
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	6e-04

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  242 bits (619), Expect = 1e-79
 Identities = 109/159 (68%), Positives = 132/159 (83%), Gaps = 1/159 (0%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           M CGSCSNENA+K IF+WY++K+RG +  F+KEE E+ MINQAPG P+ SILSF GAFHG
Sbjct: 133 MACGSCSNENAFKTIFMWYRSKERGQS-AFSKEELETCMINQAPGCPDYSILSFMGAFHG 191

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           RT+GCL+TTHSK IHKIDIP+FDWPIA FP+ KYPLEE  +EN+ E+ +CL EVEDLI K
Sbjct: 192 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 251

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           Y KK   VAGI+VEPIQSEGGDNH S+ FF++L+ I +K
Sbjct: 252 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 290

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  187 bits (478), Expect = 9e-59
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 1   MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHG 60
           +  G+ + ENA K  F W     +                +    A    +L  +GAFHG
Sbjct: 125 VEGGALAVENALKAAFDWKSRHNQA---------------HGIDPALGTQVLHLRGAFHG 169

Query: 61  RTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITK 120
           R+   LS T++K       P FDWP    P  +  L+E        +   L +       
Sbjct: 170 RSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAE--ALRQARAAFET 227

Query: 121 YNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
                  +A  V EPIQ EGGD H    FF  ++++
Sbjct: 228 RPH---DIACFVAEPIQGEGGDRHFRPEFFAAMREL 260

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score = 79.1 bits (196), Expect = 3e-18
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
            ++F GA+HGRT   L+ T     +   +      +     Y  PL      +   ++  
Sbjct: 131 TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRAL-YPCPL------HGISEDDA 183

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           +A +  +          +A IV+EP+Q EGG    S  F Q+L+ +
Sbjct: 184 IASIHRIFKNDAAPED-IAAIVIEPVQGEGGFYASSPAFMQRLRAL 228

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 78.0 bits (193), Expect = 9e-18
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPI--ASFPKYKYPLEENERENKAEDE 108
           +++F  A+HGRT   ++ T     +K     F   I  A    Y +   E  +E   + E
Sbjct: 151 VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLS-YPFRDAEFGKELATDGE 209

Query: 109 KCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
                   +I K       +A +V+EPIQ EGG    ++ F   L   
Sbjct: 210 LAAKRAITVIDKQI-GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDW 256

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKID----IPAFDWPIASFP-KYKYPLEENERENKA 105
           I++F G FHGRT G +S T SK + +      +P        +P  Y+ P   N  EN +
Sbjct: 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIH--VPYPNPYRNPWHINGYENPS 189

Query: 106 ED-EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           E   + +  +ED I         VAGI  EPIQ EGG       FF +LQK+
Sbjct: 190 ELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKL 241

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 72.2 bits (178), Expect = 9e-16
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           +++F  A+HGRT   ++ T     +K     F   +   P   YPL     E     E+ 
Sbjct: 154 VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMP-ASYPL---RDEPGLTGEEA 209

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
                  I       + +A I++EPIQ EGG    +  F   L   
Sbjct: 210 ARRAISRIETQIGAQS-LAAIIIEPIQGEGGFIVPAPGFLATLTAW 254

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 10/109 (9%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFP-KYKYPLEENERENKAEDEK 109
           I+ F  ++HG T    S T+S     +   A        P  Y+   E N      +   
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAY---DYLA 187

Query: 110 CLAEVEDLITKYNKKGTP--VAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
            L    DLI     + +   +A  + EPI S GG     + +   L++ 
Sbjct: 188 ELDYAFDLI----DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK 232

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           +++F GA+HG T+G ++ +         + A            YP       N    +  
Sbjct: 133 VIAFAGAYHGCTVGSMAFSGHS------VQADAAKADGLILLPYPDPYRPYRNDPTGDAI 186

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           L  + + +         +    +EPIQS+GG     + F ++   I
Sbjct: 187 LTLLTEKLAAVPAGS--IGAAFIEPIQSDGGLIVPPDGFLRKFADI 230

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 24/106 (22%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           ILS   +FHGRTLG L+ T      K     F+  +  F  +++    N           
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQK----PFEPLVPGFEYFEF----NN---------- 172

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           + ++   +++       V  + +EPIQ E G    +  F ++ +K+
Sbjct: 173 VEDLRRKMSED------VCAVFLEPIQGESGIVPATKEFLEEARKL 212

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score = 61.0 bits (149), Expect = 6e-12
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 30/109 (27%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
            ++FK +FHGRTLG LS T +                   KY+    PL    +  K  D
Sbjct: 127 FIAFKHSFHGRTLGALSLTAN------------------EKYQKPFKPLISGVKFAKYND 168

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              ++ VE L+ +          I++E +Q EGG N  +  F++ L+K+
Sbjct: 169 ---ISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKL 208

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score = 61.0 bits (149), Expect = 6e-12
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 24/106 (22%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           I++F  AFHGR+L  +S              F    A      +    N+          
Sbjct: 149 IIAFHNAFHGRSLFTVSVGGQPKYSD----GFGPKPADIIHVPF----ND---------- 190

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           L  V+ ++  +         +VVEPIQ EGG    +  F + L+ +
Sbjct: 191 LHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKGLRDL 230

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score = 60.6 bits (148), Expect = 9e-12
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 24/106 (22%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
            +SF+ +FHGRT G LS T     HK     F+  +  F   K     N+          
Sbjct: 120 FISFENSFHGRTYGSLSATGQPKFHK----GFEPLVPGFSYAKL----ND---------- 161

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
           +  V  L+ +        AGI++E IQ EGG N  S  F  +LQ+I
Sbjct: 162 IDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEI 201

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 30/109 (27%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYK---YPLEENERENKAED 107
            ++    F GRT+G LS T                    PKY+    PL E        D
Sbjct: 133 FVAAMRGFSGRTMGSLSVTWE------------------PKYREPFLPLVEPVEFIPYND 174

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              +  ++  + +        A +++EP+Q EGG    +  F +  ++I
Sbjct: 175 ---VEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREI 214

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 36/144 (25%)

Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
           GS +NE A+K         Q+G      K                   +S    +HG T+
Sbjct: 116 GSEANETAFK--IARQYYAQKGEPHR-YK------------------FMSRYRGYHGNTM 154

Query: 64  GCLSTTHSKYIHKIDIPAFDWPIASFPK------YKYPLEENERENKAEDEKCLAEVEDL 117
             ++ T            ++   + F        Y+ P  E E     E   C+ EV+ +
Sbjct: 155 ATMAATGQAQRRYQ----YEPFASGFLHVTPPDCYRMPGIERENIYDVE---CVKEVDRV 207

Query: 118 ITKYNKKGTPVAGIVVEPIQSEGG 141
           +T    +   +A  ++EPI + GG
Sbjct: 208 MTWELSET--IAAFIMEPIITGGG 229

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 23/106 (21%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           I+  K  F GRTLGC+S + +K         F      F K  Y        +  E    
Sbjct: 159 IVVCKNNFSGRTLGCISASTTKKCTS----NFGPFAPQFSKVPY--------DDLEA--- 203

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              +E+ +   N     V   +VEPIQ E G    S+ + Q +  I
Sbjct: 204 ---LEEELKDPN-----VCAFIVEPIQGEAGVIVPSDNYLQGVYDI 241

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 29/109 (26%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKY---PLEENERENKAED 107
           I+   G F GRTL  +S++                    P       P           D
Sbjct: 170 IVFAAGNFWGRTLSAISSSTD------------------PTSYDGFGPFMPGFDIIPYND 211

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              L  +E  +   N     VA  +VEPIQ E G       +   ++++
Sbjct: 212 ---LPALERALQDPN-----VAAFMVEPIQGEAGVVVPDPGYLMGVREL 252

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 35/144 (24%)

Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
           GS +NE   K   IWY N   G      K                  I+S    +HG  +
Sbjct: 121 GSDANETNIK--LIWYYNNVLGRPEK-KK------------------IISRWRGYHGSGV 159

Query: 64  GCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLE-ENERENKAEDE---KCLAEVEDLIT 119
              S T     H     AFD P A     + P        + +E++    C  ++E++I 
Sbjct: 160 MTGSLTGLDLFHN----AFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMIL 215

Query: 120 KYNKKGTP--VAGIVVEPIQSEGG 141
                  P  +A  + EPI   GG
Sbjct: 216 AEG----PETIAAFIGEPILGTGG 235

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 30/109 (27%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKY---PLEENERENKAED 107
           I+  +  FHGRT+G +S + +                   +YK    P+          D
Sbjct: 130 IIVCEDNFHGRTMGAVSMSSN------------------EEYKRGFGPMLPGIIVIPYGD 171

Query: 108 EKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI 156
              L  ++  IT         A  ++EPIQ E G N     F ++  ++
Sbjct: 172 ---LEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKEALEV 211

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKI-DIPAFDWPIASFPKYKYPLEENERENKAEDEK 109
            ++ K  +HG T+G +S    +  H +     F+   A  P        +  E     ++
Sbjct: 139 FIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDE---CRDQ 195

Query: 110 CLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGG 141
           CL E+  L+ +++++   +A + +E  +Q   G
Sbjct: 196 CLRELAQLLEEHHEE---IAALSIESMVQGASG 225

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 34/143 (23%)

Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
           GS S +   +   +      +G                         ++     +HG T+
Sbjct: 120 GSESVDTMIR--MVRRYWDVQGKPEK-KT------------------LIGRWNGYHGSTI 158

Query: 64  GCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE---KCLAEVEDLITK 120
           G  S    KY+H+      D PI      + P      ++   DE        +E+ I +
Sbjct: 159 GGASLGGMKYMHE----QGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILE 214

Query: 121 YNKKGTP--VAGIVVEPIQSEGG 141
                    VA  V EPIQ  GG
Sbjct: 215 IG----ADKVAAFVGEPIQGAGG 233

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 31/143 (21%)

Query: 3   CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT 62
            GS     A K   +    + +G A+                      ++     +HG  
Sbjct: 118 SGSECALTAVK--MVRAYWRLKGQATKTK-------------------MIGRARGYHGVN 156

Query: 63  LGCLSTTHSKYIHKIDIPAFDWPIASFPK----YKYPLEENERENKAEDEKCLAEVEDLI 118
           +   S        K     F  P+                +    K        E+  LI
Sbjct: 157 IAGTSLGGVNGNRK----LFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212

Query: 119 TKYNKKGTPVAGIVVEPIQSEGG 141
             ++   + +A + VEP+    G
Sbjct: 213 ELHD--ASNIAAVFVEPLAGSAG 233

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 34/143 (23%)

Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
           GS +N+   K   +W+ +   G      K                  IL+   A+HG T 
Sbjct: 131 GSEANDTMVK--MLWFLHAAEGKPQK-RK------------------ILTRWNAYHGVTA 169

Query: 64  GCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE---KCLAEVEDLITK 120
              S T   Y     +P   +   + P + +       E + E++   +   E+E+ I +
Sbjct: 170 VSASMTGKPYNSVFGLPLPGFVHLTCP-HYW---RYGEEGETEEQFVARLARELEETIQR 225

Query: 121 YNKKGTP--VAGIVVEPIQSEGG 141
                    +AG   EP+   GG
Sbjct: 226 EG----ADTIAGFFAEPVMGAGG 244

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 35/144 (24%)

Query: 3   CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT 62
            GS + ++A +  F  + N   G                         I+     +HG T
Sbjct: 122 GGSTAVDSALR--FSEFYNNVLGRPQKKR-------------------IIVRYDGYHGST 160

Query: 63  LGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDE---KCLAEVEDLIT 119
               + T            FD           P   +   N++++      + E ED I 
Sbjct: 161 ALTAACTGRTGNWP----NFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIE 215

Query: 120 KYNKKGTP--VAGIVVEPIQSEGG 141
                  P  +A  + EPI + GG
Sbjct: 216 SLG----PDTIAAFLAEPILASGG 235

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score = 44.4 bits (106), Expect = 4e-06
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 34/113 (30%)

Query: 42  QAPGAPNLSILSFKGAFHGRTLGCLSTT------HSKY------IHKIDIPAFDWPIASF 89
           QA G      L+F+  +HG T G +S        HS +            P         
Sbjct: 128 QAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAP--------- 178

Query: 90  PKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
                      R +   DE+ +     L+  +  +   +A +++EPI Q  GG
Sbjct: 179 ---------QSRMDGEWDERDMVGFARLMAAHRHE---IAAVIIEPIVQGAGG 219

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 26/98 (26%)

Query: 51  ILSFKGAFHGRTLGCLSTT------HSKYIHKIDIPAFDWPIASFPKYKYPLEENERENK 104
           +++++G +HG T   +S        HS +   +         A      Y          
Sbjct: 170 LMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVL----AAQVFAPQVPRDY---------- 215

Query: 105 AEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGG 141
             D    A  E  + ++  +   +A +VVEP+ Q  GG
Sbjct: 216 --DPAYSAAFEAQLAQHAGE---LAAVVVEPVVQGAGG 248

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 31/142 (21%)

Query: 3   CGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT 62
            GS +N+   +   +    + +G     T                   I+S K A+HG T
Sbjct: 124 GGSEANDTNIR--MVRTYWQNKGQPEK-TV------------------IISRKNAYHGST 162

Query: 63  LGCLSTTHSKYIHKIDIPAFDWPIASFP-KYKYPLEENERENKAEDEKCLAEVEDLITKY 121
           +   +      +H       D    + P  +    + +  E          E+E+ I + 
Sbjct: 163 VASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLA---RARELEEAILEL 219

Query: 122 NKKGTP--VAGIVVEPIQSEGG 141
                   VA  + EP+Q  GG
Sbjct: 220 G----ENRVAAFIAEPVQGAGG 237

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 44/165 (26%)

Query: 4   GSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL 63
           GS + E A K  F  +        +   ++                 +++ +G++HG TL
Sbjct: 451 GSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVK------------VIALRGSYHGDTL 498

Query: 64  GCLS---------------------------TTHSKYIHKIDIP---AFDWPIASFPKYK 93
           G +                               S     I +P   +   P       +
Sbjct: 499 GAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSR 558

Query: 94  YPLEENERENKAEDEKCLAEVEDLITKY--NKKGTPVAGIVVEPI 136
             + +  R+         A +   + ++   ++   V  +++EP+
Sbjct: 559 DEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPV 603

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.97
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.95
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.93
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.92
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.9
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.88
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.87
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.84
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.83
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.82
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.82
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.81
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.8
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.8
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.71
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.53
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.69
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.68
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.67
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.67
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.66
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.63
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.63
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.63
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.61
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.61
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.59
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.59
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.56
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.54
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.49
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.45
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.44
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.37
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.32
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.22
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.03
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.98
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.94
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	98.44
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	98.41
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.36
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	97.93
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	97.81
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	97.65
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.64
1svv_A	359	Threonine aldolase; structural genomics, structura	97.61
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	97.53
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	97.52
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	97.52
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	97.52
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	97.45
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.42
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	97.41
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	97.34
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	97.33
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	97.31
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	97.3
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	97.28
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.27
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	97.27
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	97.27
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	97.22
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	97.22
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	97.22
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	97.21
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	97.18
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	97.13
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	97.13
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	97.08
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	97.08
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	97.08
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	97.06
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	97.04
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	96.97
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	96.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	96.94
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	96.94
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	96.94
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	96.91
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	96.9
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	96.89
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	96.88
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	96.86
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	96.84
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	96.8
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	96.74
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	96.74
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	96.73
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	96.73
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	96.71
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	96.68
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	96.6
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	96.6
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	96.6
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	96.59
3pj0_A	359	LMO0305 protein; structural genomics, joint center	96.58
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	96.56
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	96.54
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	96.52
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	96.5
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	96.49
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	95.5
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	96.48
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	96.46
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	96.46
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	96.38
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	96.38
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	96.36
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	96.35
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	96.34
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	96.33
3ele_A	398	Amino transferase; RER070207001803, structural gen	96.31
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	96.29
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	96.28
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	96.28
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	96.27
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	96.26
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	96.26
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	96.25
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	96.24
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	96.22
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	96.2
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	96.19
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	96.13
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	96.12
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	96.09
3nra_A	407	Aspartate aminotransferase; structural genomics, j	96.08
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	96.01
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	95.97
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	95.95
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	95.94
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	95.85
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	95.8
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	95.79
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	95.74
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	95.74
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	95.45
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	95.41
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	95.41
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	95.41
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	95.36
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	95.32
1vp4_A	425	Aminotransferase, putative; structural genomics, j	95.24
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	95.23
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	95.19
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	95.18
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	95.07
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	95.05
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	95.04
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	94.99
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	94.98
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	94.88
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	94.77
1o69_A	394	Aminotransferase; structural genomics, unknown fun	94.76
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	94.62
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	94.52
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	94.52
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	94.48
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	94.36
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	94.29
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	94.18
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	94.17
3rq1_A	418	Aminotransferase class I and II; structural genomi	94.13
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	94.07
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	93.8
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	93.77
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	93.61
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	93.4
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	92.92
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	92.65
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	92.46
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	92.24
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	91.35
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	91.19
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	90.78
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	90.65
1iug_A	352	Putative aspartate aminotransferase; wild type, py	90.58
2fnu_A	375	Aminotransferase; protein-product complex, structu	90.28
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	90.05
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	89.53
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	88.66
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	87.84
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	87.57
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	86.61
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	86.06
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	84.96
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	84.28
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	83.72
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	83.66
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	83.62
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	81.95
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	81.5
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	81.28
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	80.33

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.97  E-value=1.9e-31  Score=224.51  Aligned_cols=134  Identities=24%  Similarity=0.343  Sum_probs=103.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||+||||||+|+..+  |.                 |+  |.+||+|+++|||+|++++++|+....+....+
T Consensus       134 ~~sGsEA~e~AiKlAr~~~~~~--g~-----------------~~--r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~  192 (473)
T 4e3q_A          134 TNSGSEANDTMVKMLWFLHAAE--GK-----------------PQ--KRKILTRWNAYHGVTAVSASMTGKPYNSVFGLP  192 (473)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCS
T ss_pred             eCchHHHHHHHHHHHHHHHHhc--CC-----------------CC--cceEEEeeceECCCccccccccccccccccCCC
Confidence            5899999999999999998776  43                 45  899999999999999999999997543333334


Q ss_pred             CCCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..++.++|.|. ++++..  ....+.+...+.+++++.|.+..  +++|||||+|||||+||+++||++||++||++|+|
T Consensus       193 ~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~  268 (473)
T 4e3q_A          193 LPGFVHLTCPHYWRYGEE--GETEEQFVARLARELEETIQREG--ADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK  268 (473)
T ss_dssp             CTTEEEECCCCHHHHSCT--TCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred             CCcccccCCCcccccccc--cchhhHHHHHHHHHHHHHHHhhC--CCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc
Confidence            44556667664 222111  01123455667788888887763  57899999999999999999999999999999985

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.95  E-value=1.2e-28  Score=206.64  Aligned_cols=125  Identities=24%  Similarity=0.254  Sum_probs=89.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcc-ccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKY-IHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~-~~~~~~   79 (159)
                      +||||||||+||||||.|+                         +  |.+||+|+++|||+|++++++++... ++..+.
T Consensus       131 ~~sGsEA~e~AlklAr~~t-------------------------~--r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~  183 (456)
T 4atq_A          131 FNSGAEAVENAVKVARLAT-------------------------G--RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFG  183 (456)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSC
T ss_pred             eCChHHHHHHHHHHHhhhh-------------------------c--CCeEEEEecccCCccccccccccCccccccCCC
Confidence            4899999999999999995                         4  88999999999999999999998764 333444


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      |. .++.++|+|. ++...      .+..+..+++.+.+.++... ++++|||||+|||||+||+++||++||++||++|
T Consensus       184 p~~~~~~~~p~~~~~~~~~------~~~~~~~~~~~~~~~~e~~~-~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc  256 (456)
T 4atq_A          184 PFAPEVYRMPMSYPFREEN------PEITGAEAAKRAITMIEKQI-GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA  256 (456)
T ss_dssp             SCCSSEEEECCCCGGGCSS------TTCCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             CccccceecccccccccCC------CcccHHHHHHHHHHHHHHhh-cCCceEEEEeccccCCCCccccchhhhHHHHHHH
Confidence            43 2445566553 11111      11111222233223333321 2569999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       257 ~~  258 (456)
T 4atq_A          257 KE  258 (456)
T ss_dssp             HH
T ss_pred             hh
Confidence            85

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.93  E-value=5.8e-26  Score=190.18  Aligned_cols=104  Identities=24%  Similarity=0.362  Sum_probs=83.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.|||+||.|+                         |  |.+||+|+++|||+|+++++.++....      
T Consensus       149 ~~SGsEA~e~AiklAr~~t-------------------------g--r~~ii~~~~~yHG~t~~~~~~~~~~~~------  195 (454)
T 4ao9_A          149 TNSGTEANLMALTAALHFT-------------------------G--RRKIVVFSGGYHGGVLGFGARPSPTTV------  195 (454)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------T--CCEEEEETTCBCSTTCBBSSSBCTTSC------
T ss_pred             eCchHHHHHHHHHHHHhcc-------------------------c--CCeEEEEeCCcCCccccccccccCccC------
Confidence            4899999999999999996                         4  889999999999999887766543211      


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                             |......      +++|      ++.++++|+++   +++|||||+|||||++|+++||++||++||+||+|
T Consensus       196 -------~~~~~~~------p~nd------~~~l~~~l~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~  252 (454)
T 4ao9_A          196 -------PFDFLVL------PYND------AQTARAQIERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ  252 (454)
T ss_dssp             -------CSEEEEE------CTTC------HHHHHHHHHHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH
T ss_pred             -------CCCcccC------CCch------HHHHHHHHhhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhh
Confidence                   1100011      2344      67788888876   56899999999999999999999999999999985

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.92  E-value=1.4e-25  Score=199.44  Aligned_cols=146  Identities=16%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             CCCcchHHHHHHHHH-HHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcccccc--
Q psy4805           1 MMCGSCSNENAYKNI-FIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKI--   77 (159)
Q Consensus         1 ~~sGseA~e~AlklA-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~--   77 (159)
                      +||||||||+||||| |+|+.++  |....   .+      ...++  |.+||+|+++|||+|++++++|+...++..  
T Consensus       448 ~~SGSeA~E~AlK~A~r~~~~~~--g~~~~---~~------~~~~~--r~~iI~~~~syHG~T~gals~tg~~~~~~~~~  514 (831)
T 4a0g_A          448 SDNGSTAIEIALKMAFRKFCVDH--NFCEA---TE------EEKHI--VVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQ  514 (831)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTT--TC------------------C--CEEEEEETTCCCCSSHHHHHTSCCCGGGSTTT
T ss_pred             CCChhHHHHHHHHHHHHHHHhhc--CCCcc---cc------ccccC--ccEEEEecCCcccCceeeeeccCccccccccc
Confidence            489999999999999 5677654  32000   00      00013  889999999999999999999986544431  


Q ss_pred             --CC----CCC---------CCCcccCCC-CCCC------Cccc------hhhhhHHHHHHHHHHHHHHHHhc--cCCCC
Q psy4805          78 --DI----PAF---------DWPIASFPK-YKYP------LEEN------ERENKAEDEKCLAEVEDLITKYN--KKGTP  127 (159)
Q Consensus        78 --~~----~~~---------~~~~~p~p~-~~~~------~~~~------~~~~~~~~~~~~~~le~~i~~~~--~~~~~  127 (159)
                        +.    +.+         ++.+++.|. ++..      +...      ....+.+...|+++|+++|++..  ..+++
T Consensus       515 ~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~  594 (831)
T 4a0g_A          515 QPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAH  594 (831)
T ss_dssp             CTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CE
T ss_pred             cccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCc
Confidence              11    100         112234442 2211      1000      00012234567788888886421  12578


Q ss_pred             eEEEEEccc-ccCCCCccCCHHHHHHHHHHhcC
Q psy4805         128 VAGIVVEPI-QSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       128 vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      |||||+||| ||+||++++|++||++|+++|++
T Consensus       595 iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~  627 (831)
T 4a0g_A          595 VGALIIEPVIHGAGGMHMVDPLFQRVLVNECRN  627 (831)
T ss_dssp             EEEEEECCSEETTTTSEEECHHHHHHHHHHHHH
T ss_pred             EEEEEEecccccCCCCccCCHHHHHHHHHHHHH
Confidence            999999996 99999999999999999999985

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.90  E-value=4.2e-23  Score=172.91  Aligned_cols=158  Identities=70%  Similarity=1.215  Sum_probs=110.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||+|++++.+|. ..+|+.|..+.|.+..+|.+|.+||+|+++|||+|.+++++++....+..+.+
T Consensus       133 ~~sGseA~~~Aik~a~~~~~~~~~~~-~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~  211 (472)
T 1ohv_A          133 MACGSCSNENAFKTIFMWYRSKERGQ-SAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIP  211 (472)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSC
T ss_pred             eCCchhHHHHHHHHHHHHhhhhccCc-ccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCC
Confidence            48999999999999999975321121 12344455555555555522589999999999999999999986543332333


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..++.++++|.+++|......+++.+...++++|+++|..+.....++++||+||+++++|+++||++||++|+++|++
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~  290 (472)
T 1ohv_A          212 SFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK  290 (472)
T ss_dssp             CCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHH
Confidence            3344556777655553221123344445568889988876421112799999999999999999999999999999974

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.88  E-value=2.9e-22  Score=167.97  Aligned_cols=132  Identities=20%  Similarity=0.147  Sum_probs=103.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||||||+.|||+||+++..+  |.                 +|  |.+||+++++|||.|.+++++++...++..+.+
T Consensus       120 ~~sGseA~~~Aik~a~~~~~~~--g~-----------------~~--~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~  178 (476)
T 3i5t_A          120 TTGGSTAVDSALRFSEFYNNVL--GR-----------------PQ--KKRIIVRYDGYHGSTALTAACTGRTGNWPNFDI  178 (476)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCC
T ss_pred             eCchHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEEcCCcCcCChhhccccCChhhccccCC
Confidence            4899999999999999998665  43                 45  889999999999999999999998766655554


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.+++.|. +++ +..   ..+.+...++++|++++.+..  ++++++||+||+|+.+|++++|++||++|+++|+
T Consensus       179 ~~~~~~~~~~p~~~~~-~~~---~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~  252 (476)
T 3i5t_A          179 AQDRISFLSSPNPRHA-GNR---SQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICE  252 (476)
T ss_dssp             CCTTEEEECCCCGGGC-TTS---CHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred             CCCCcEEeCCCccccc-CCC---chHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH
Confidence            3 3445566653 222 111   123445567889999887652  3689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       253 ~  253 (476)
T 3i5t_A          253 K  253 (476)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.87  E-value=3.1e-22  Score=167.70  Aligned_cols=132  Identities=23%  Similarity=0.293  Sum_probs=101.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +||||||||.|||+||.|+..+  |.                 ++  |.+||+|+++|||.|.+++++++...++..+.+
T Consensus       122 ~~sGseA~~~aik~a~~~~~~~--g~-----------------~~--~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~  180 (472)
T 3hmu_A          122 AGGGSEANDTNIRMVRTYWQNK--GQ-----------------PE--KTVIISRKNAYHGSTVASSALGGMAGMHAQSGL  180 (472)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCC
T ss_pred             eCCHHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEEcCcCCCccHHhhhccCChhhccccCC
Confidence            4899999999999999998765  43                 34  889999999999999999999987655554442


Q ss_pred             CCCCCcccCCC-CC-CCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AFDWPIASFPK-YK-YPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~~~~~~p~p~-~~-~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      ..++.++|.|. ++ .+. .   ..+.+...++++|+++|.+..  ++++++||+||+|+.+|++++|++||++|+++|+
T Consensus       181 ~~~~~~v~~p~~~~~~~~-~---~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~  254 (472)
T 3hmu_A          181 IPDVHHINQPNWWAEGGD-M---DPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICD  254 (472)
T ss_dssp             CSSEEEECCCCHHHHCTT-C---CHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHH
T ss_pred             CCCcEEeCCCccccCCcc-c---CHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHH
Confidence            23445556553 22 111 0   123445566888999887652  3689999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       255 ~  255 (472)
T 3hmu_A          255 K  255 (472)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.84  E-value=1.5e-20  Score=156.34  Aligned_cols=134  Identities=21%  Similarity=0.246  Sum_probs=102.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+++.|+..+  |.                 ++  +.+||+++++|||.|.+++++++...++..+.+
T Consensus       118 ~~gGseA~~~al~~~~~~~~~~--g~-----------------~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  176 (460)
T 3gju_A          118 GLSGSDANETNIKLIWYYNNVL--GR-----------------PE--KKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDL  176 (460)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTC
T ss_pred             eCchHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEECCCcCCCCHHHhhccCCcccccccCC
Confidence            4899999999999999998665  43                 34  889999999999999999999987766555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++.++|.|. ++++....  ..+.+...++++|++.+.+..  ++++++||+||+++.+|++++|++||++|+++|+
T Consensus       177 ~~~~~~~~~~p~~~~~~~~g~--~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~  252 (460)
T 3gju_A          177 PRAPVLHTEAPYYFRRTDRSM--SEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLK  252 (460)
T ss_dssp             SCTTEEEECCCCGGGCSCTTC--CHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred             CCCCCEEeCCCccccCCcccc--ChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence            3 2445566553 33221000  123345566888998887642  3589999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       253 ~  253 (460)
T 3gju_A          253 K  253 (460)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.83  E-value=2.3e-20  Score=155.19  Aligned_cols=124  Identities=22%  Similarity=0.237  Sum_probs=90.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++||||||+.|||+||.++                         |  |.+||+++++|||.|.+++++++.. .++..+.
T Consensus       131 ~~sGseA~~~alk~a~~~~-------------------------g--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  183 (453)
T 4ffc_A          131 FNSGAEAVENAIKVARLAT-------------------------G--RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFG  183 (453)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSC
T ss_pred             eCcHHHHHHHHHHHHHHhc-------------------------C--CCEEEEEcCccCCcchHHHhhcCCCcccccCCC
Confidence            4899999999999999984                         4  7899999999999999999999864 4444444


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. .++.++|+|. ++++....   .+.+...+++.|++.+.     .+++++||+||++++||++++|++||++|+++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~l~~~i~-----~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~  255 (453)
T 4ffc_A          184 PFAPEVYRMPASYPLRDEPGLT---GEEAARRAISRIETQIG-----AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWA  255 (453)
T ss_dssp             SCCSSEEEECCCCTTTSCTTCC---HHHHHHHHHHHHHHHTC-----GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             CCCCCcEEeCCCccccCccccc---hHHHHHHHHHHHHHhcC-----CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence            43 2445566653 33332110   11222233445544432     358999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       256 ~~  257 (453)
T 4ffc_A          256 SE  257 (453)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.82  E-value=5e-20  Score=153.64  Aligned_cols=123  Identities=24%  Similarity=0.376  Sum_probs=90.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCC-CccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTH-SKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~-~~~~~~~~~   79 (159)
                      ++|||||+|.|||+++.|+..+  |.                 +|  +.+||+++++|||.|.+++++++ ...++..+.
T Consensus       141 ~~sGseA~~~Alk~a~~~~~~~--g~-----------------~g--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  199 (457)
T 3tfu_A          141 SDSGSVSVEVAAKMALQYWRGR--GL-----------------PG--KRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWT  199 (457)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTCCCCSSHHHHTTSCCC--------
T ss_pred             eCcHHHHHHHHHHHHHHHHHhc--CC-----------------CC--CceEEEEcCCcCCccHHhhcccCCccccccccc
Confidence            4899999999999999998765  43                 35  78999999999999999999965 333444343


Q ss_pred             CC-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. .+..++|.|...+      ..+      ++++|++.|+++   ++++++||+|| +|+.+|+++++++||++|+++|
T Consensus       200 ~~~~~~~~~~~p~~~~------~~~------d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~  264 (457)
T 3tfu_A          200 DVLAAQVFAPQVPRDY------DPA------YSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDIC  264 (457)
T ss_dssp             --CCCCEEECCCCSSC------CHH------HHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHH
T ss_pred             CCCCCceEecCCCccc------CHH------HHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHH
Confidence            32 2344455543111      012      277888888765   46899999999 9999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       265 ~~  266 (457)
T 3tfu_A          265 RR  266 (457)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.82  E-value=2.5e-20  Score=154.81  Aligned_cols=129  Identities=24%  Similarity=0.202  Sum_probs=92.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      ++||||||+.|||+||.++                         |  |.+||+++++|||.|.+++++++.. .++..+.
T Consensus       128 ~~sGseA~~~Alk~a~~~~-------------------------g--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  180 (451)
T 3oks_A          128 FNSGSEAVENAVKIARSHT-------------------------H--KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFG  180 (451)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCC
T ss_pred             eCcHHHHHHHHHHHHHHhc-------------------------C--CCeEEEEcCCcCCccHHHHHhcCCCcccccCCC
Confidence            4899999999999999984                         4  7899999999999999999999864 4444444


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      +. .++.++|+|. ++++.. .. ..+.+...+++.+++.|+... .++++++||+||+|+++|++++|++||++|+++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~l~~~~-~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~  257 (451)
T 3oks_A          181 PFAPEIYRAPLSYPFRDAEF-GK-ELATDGELAAKRAITVIDKQI-GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC  257 (451)
T ss_dssp             SCCSSEEEECCCCHHHHGGG-CT-TTTTCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             CCCCCcEEeCCCcccccccc-cc-ccchhhHHHHHHHHHHHHhhc-CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHH
Confidence            43 2444455542 111100 00 011123345666666665432 2368999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       258 ~~  259 (451)
T 3oks_A          258 RK  259 (451)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.81  E-value=8.9e-20  Score=151.58  Aligned_cols=132  Identities=22%  Similarity=0.265  Sum_probs=99.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+++.++..+  |.                 ++  +.+||+++++|||.|.+++++++...++..+.+
T Consensus       117 ~~ggseA~~~al~~~~~~~~~~--g~-----------------~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  175 (459)
T 4a6r_A          117 TNSGSESVDTMIRMVRRYWDVQ--GK-----------------PE--KKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDL  175 (459)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTCCCCSSHHHHHHSCCTTTC---CC
T ss_pred             eCchHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEECCCcCCccHHHHhhcCChhhccccCC
Confidence            4799999999999999998765  43                 34  789999999999999999999987766555544


Q ss_pred             C-CCCCcccCCC-CC-CCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          81 A-FDWPIASFPK-YK-YPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~-~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      . .+..++|.|. ++ .++ .   ..+.+...++++|++.+.+..  ++++++||+||+++.+|++++|++||++|+++|
T Consensus       176 ~~~~~~~~~~p~~~~~~~~-~---d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  249 (459)
T 4a6r_A          176 PIPGMAHIEQPWWYKHGKD-M---TPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATYWPEIERIC  249 (459)
T ss_dssp             SCSSEEEECCCCHHHHCTT-C---CHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             CCCCCEEeCCCccccCCcc-c---CHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHH
Confidence            3 2444555553 21 111 0   123344556788988887642  368999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       250 ~~  251 (459)
T 4a6r_A          250 RK  251 (459)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.80  E-value=1.6e-19  Score=149.46  Aligned_cols=132  Identities=24%  Similarity=0.374  Sum_probs=100.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||++.|||++++|+..+  |+                 ++  +.+||.++++|||.+.+++++++...++..+.+
T Consensus       113 ~~ggseA~~~al~~~~~~~~~~--g~-----------------~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  171 (452)
T 3n5m_A          113 SNSGSEANETAFKIARQYYAQK--GE-----------------PH--RYKFMSRYRGYHGNTMATMAATGQAQRRYQYEP  171 (452)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHTT--TC-----------------TT--CCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCC
T ss_pred             eCchHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEECCCcCCCCHHHHhcCCchhhccccCC
Confidence            4899999999999999987543  32                 23  789999999999999999999987665555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHHHh
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc  157 (159)
                      . .+..++|.|. +++|+.+.   .+.+...++++|++.+.+..  .+++++||+||+ |+ +|+++|+++||++|+++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~le~~l~~~~--~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~  245 (452)
T 3n5m_A          172 FASGFLHVTPPDCYRMPGIER---ENIYDVECVKEVDRVMTWEL--SETIAAFIMEPIITG-GGILMAPQDYMKAVHETC  245 (452)
T ss_dssp             CCSCEEEECCCCTTTSTTTTT---SCGGGCHHHHHHHHHHHHHC--GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred             CCCCCeEeCCCccccCccCCc---hhhHHHHHHHHHHHHHHhcC--CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence            3 2445566654 45554321   12344556888988887331  358999999999 89 999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       246 ~~  247 (452)
T 3n5m_A          246 QK  247 (452)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.80  E-value=1.3e-19  Score=150.10  Aligned_cols=131  Identities=21%  Similarity=0.381  Sum_probs=79.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||++.|||+++.++...  |.                 ++  |.+||+++++|||.+.+++++++...++..+.+
T Consensus       110 ~~sGseA~~~al~~~~~~~~~~--G~-----------------~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  168 (448)
T 3dod_A          110 SDSGAEAMEIALKMAFQYWKNI--GK-----------------PE--KQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGP  168 (448)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEEC-------------------------
T ss_pred             eCchHHHHHHHHHHHHHHHHhh--CC-----------------CC--CCEEEEECCCCCCccHHHHHhcCCccccccccC
Confidence            4899999999999999986554  42                 22  789999999999999999999987655555544


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccc-cCCCCccCCHHHHHHHHHHh
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQ-SEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiq-G~gGv~~pp~~fl~~lr~lc  157 (159)
                      . .++.++|.|+ ++++ ...   .+.+...++++|++.|...   .+++++||+||++ +.+|+++++++||++|+++|
T Consensus       169 ~~~~~~~~~~~~~~~~~-~~~---~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~  241 (448)
T 3dod_A          169 LMFESYKAPIPYVYRSE-SGD---PDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELC  241 (448)
T ss_dssp             ----CEEECCCCCTTSS-SCC---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred             CCCCceEeCCCccccCC-ccc---hhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence            3 3555667765 5554 211   1233445688898888754   4689999999998 99999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       242 ~~  243 (448)
T 3dod_A          242 TT  243 (448)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.71  E-value=2.4e-17  Score=136.74  Aligned_cols=135  Identities=27%  Similarity=0.293  Sum_probs=91.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhc--CCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCC-cccccc
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQ--RGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHS-KYIHKI   77 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~-~~~~~~   77 (159)
                      ++||+||++.|+|+||.|+..+.  .|.                 ++..+.+||+++++|||.+.+++++++. +.++..
T Consensus       125 ~~~gseA~~~aik~a~~~~~~~~~~~~~-----------------~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~  187 (449)
T 2cjg_A          125 VEGGALAVENALKAAFDWKSRHNQAHGI-----------------DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITAR  187 (449)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHHTTS-----------------CTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTT
T ss_pred             eCchHHHHHHHHHHHHHHhccccccccc-----------------ccCCCCEEEEECCCcCCcccchhhhcCCchhhccc
Confidence            47999999999999998874210  011                 1101678999999999999999999985 333333


Q ss_pred             CCCCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHH
Q psy4805          78 DIPAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKI  156 (159)
Q Consensus        78 ~~~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~l  156 (159)
                      +.|.. ++..+|+++. ...  ...+ +.+...++++|++.|.++   .+++++||+||+|+.+|+++++++||++|+++
T Consensus       188 ~~~~~~~~~~~~~~d~-~~~--~~~~-~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l  260 (449)
T 2cjg_A          188 FPKFDWPRIDAPYMRP-GLD--EPAM-AALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMREL  260 (449)
T ss_dssp             SCCCCCCEECCCCCCT-TCC--HHHH-HHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHH
T ss_pred             CCCCCCCcEEEcCCCc-hhh--cccc-chhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHH
Confidence            33321 2223333220 000  0001 122345677888888753   35899999999999999999999999999999


Q ss_pred             hcC
Q psy4805         157 GKK  159 (159)
Q Consensus       157 c~~  159 (159)
                      |++
T Consensus       261 ~~~  263 (449)
T 2cjg_A          261 CDE  263 (449)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            984

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.53  E-value=1.3e-18  Score=146.06  Aligned_cols=104  Identities=23%  Similarity=0.336  Sum_probs=79.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +|||+||||.|||+||.++                         |  |.+||+|+++|||+|.+++  ++ +. ..    
T Consensus       162 ~nSGseA~~~Aik~ar~~t-------------------------g--r~~ii~~~~~yHG~~~~~~--sg-~~-~~----  206 (465)
T 2yky_A          162 TNSGTEANLMALATATAIT-------------------------G--RKTVLAFDGGYHGGLLNFA--SG-HA-PT----  206 (465)
Confidence            5899999999999999874                         4  7899999999999999888  33 10 00    


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +   +|.....+|      ++|      +++|+++|.++   ++++++||+||+++++|+++++++|+++|+++|++
T Consensus       207 --g---~~~~~~~~~------~~d------~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~  265 (465)
T 2yky_A          207 --N---APYHVVLGV------YND------VEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASR  265 (465)
Confidence              0   010001111      233      67777787654   36899999999999999999999999999999985

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.69  E-value=5.9e-17  Score=132.99  Aligned_cols=118  Identities=20%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||++.|+|+||.++                         +  +.+||+++++|||.+..++..++....... .+
T Consensus       115 ~~sGsea~~~al~~a~~~~-------------------------~--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~-~~  166 (429)
T 4e77_A          115 VNSGTEATMSAIRLARGYT-------------------------G--RDKIIKFEGCYHGHADCLLVKAGSGALTLG-QP  166 (429)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEETTCCCC-------------------C
T ss_pred             eCcHHHHHHHHHHHHHHhh-------------------------C--CCEEEEEcCccCCCChhhhhhcCCcccccC-CC
Confidence            4899999999999999884                         3  679999999999999987766654321110 01


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ...  .++.+..  +.....+++|      +++|++++.++   ++++++||+||+++++|++.++++|+++|+++|++
T Consensus       167 ~~~--~~~~~~~--~~~~~~~~~d------~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~  232 (429)
T 4e77_A          167 NSP--GVPTDFA--KHTLTCTYND------LASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDE  232 (429)
T ss_dssp             CCT--TSCGGGG--TTEEEECTTC------HHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH
T ss_pred             CcC--CCCCccC--CceeecCCCC------HHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence            100  0110000  0000111233      67788888764   46899999999999999999999999999999974

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.68  E-value=8.4e-17  Score=132.14  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=81.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||++.|+|+++.++                         +  +.+||.++++|||.+..++++++....... .|
T Consensus       117 ~~sGsea~~~ai~~a~~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~-~~  168 (434)
T 3l44_A          117 VNSGTEAVMTTIRVARAYT-------------------------G--RTKIMKFAGCYHGHSDLVLVAAGSGPSTLG-TP  168 (434)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEETTCCCCSSGGGGBC-------CC-CB
T ss_pred             eCchHHHHHHHHHHHHHhh-------------------------C--CCEEEEEcCccCCCcHHHHhhcCCcccccC-CC
Confidence            4799999999999999884                         3  679999999999999999988875321110 01


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..  ..++.+..  +.....+++|      +++|++++.++   ++++++||+||+++.+|+++++++|+++|+++|++
T Consensus       169 ~~--~~~~~~~~--~~~~~~~~~d------~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  234 (434)
T 3l44_A          169 DS--AGVPQSIA--QEVITVPFNN------VETLKEALDKW---GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHE  234 (434)
T ss_dssp             SS--TTCCHHHH--TTEEEECTTC------HHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHT
T ss_pred             Cc--CCCCCcCC--CceEecCccc------HHHHHHHHHhC---CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHH
Confidence            00  00110000  0000111233      67788888765   35899999999999999999999999999999986

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.67  E-value=1.9e-16  Score=131.09  Aligned_cols=116  Identities=25%  Similarity=0.312  Sum_probs=85.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|++|+|+..+ +|..                +|  |.+||.++++|||.+..++++++.+.++..+.|
T Consensus       139 ~~sGseA~~~al~~~~~~~~~~-~g~~----------------~g--~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p  199 (439)
T 2oat_A          139 MNTGVEAGETACKLARKWGYTV-KGIQ----------------KY--KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGP  199 (439)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT-TCCC----------------TT--CCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCS
T ss_pred             eCCHHHHHHHHHHHHHHHhhhc-cCCC----------------CC--CCeEEEEcCCCCCCCHhHhhcCCChhcccCCCC
Confidence            4799999999999999875432 1210                24  679999999999999999998875433333333


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++..+|+             +|      +++|++.++.     +++++||+||+++.+|++++|++|+++|+++|++
T Consensus       200 ~~~~v~~~~~-------------~d------~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  255 (439)
T 2oat_A          200 FMPGFDIIPY-------------ND------LPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR  255 (439)
T ss_dssp             CCTTEEEECS-------------SC------HHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             CCCCeEEeCC-------------CC------HHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            21 1111211             23      5667777641     4799999999999999999999999999999974

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.67  E-value=1.7e-16  Score=131.11  Aligned_cols=116  Identities=30%  Similarity=0.396  Sum_probs=68.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+||+|+..+ +|..                +|  |.+||.++++|||.+..++++++...++..+.|
T Consensus       128 ~~sGseA~~~al~~a~~~~~~~-~g~~----------------~g--r~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p  188 (433)
T 1z7d_A          128 MNTGAEANETAYKLCRKWGYEV-KKIP----------------EN--MAKIVVCKNNFSGRTLGCISASTTKKCTSNFGP  188 (433)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT-SCCC----------------TT--CCEEEEETTC-----------------------
T ss_pred             eCCHHHHHHHHHHHHHHHhhhc-cCCC----------------CC--CCeEEEEeCCcCCcchhhhcccCCccccccCCC
Confidence            4799999999999999875332 1210                34  689999999999999999888875433333322


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++..+|             ++|      +++|++.++     .+++++||+||+++++|++++|++|+++|+++|++
T Consensus       189 ~~~~v~~~~-------------~~d------~~~le~~l~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  244 (433)
T 1z7d_A          189 FAPQFSKVP-------------YDD------LEALEEELK-----DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK  244 (433)
T ss_dssp             ---CEEEEC-------------TTC------HHHHHHHHT-----STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred             CCCCeEEeC-------------CCC------HHHHHHHhC-----CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHH
Confidence            21 111111             123      567777774     14799999999999999999999999999999974

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.66  E-value=1.4e-16  Score=130.84  Aligned_cols=118  Identities=20%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||++.|+|+++.++                         +  +.+||.++++|||.+.+++++++....... .+
T Consensus       115 ~~~Gsea~~~ai~~a~~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~-~~  166 (429)
T 3k28_A          115 VNSGTEATMSALRLARGYT-------------------------G--RNKILKFIGCYHGHGDSLLIKAGSGVATLG-LP  166 (429)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------T--CCEEEEEETCCCCSCGGGCSSCCTTC------C
T ss_pred             eCChHHHHHHHHHHHHHhh-------------------------C--CCEEEEECCCcCCCcHHHHHhcCCcccccC-CC
Confidence            4799999999999999884                         3  678999999999999999888764321110 01


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..  ..++.+..  +.....+++|      +++|++++.++   ++++++||+||+++++|+++++++||++|+++|++
T Consensus       167 ~~--~~~~~~~~--~~~~~~~~~d------~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  232 (429)
T 3k28_A          167 DS--PGVPEGVA--KNTITVAYND------LESVKYAFEQF---GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQ  232 (429)
T ss_dssp             CC--TTCCHHHH--TTEEEEETTC------HHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH
T ss_pred             Cc--CCCCCccc--CceeecCCCC------HHHHHHHHHhC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence            00  00110000  0000112233      67788888765   46899999999999999999999999999999974

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.63  E-value=3.4e-16  Score=128.27  Aligned_cols=117  Identities=21%  Similarity=0.264  Sum_probs=83.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+||.++                         +  +.+||.++++|||.+..++++++........ +
T Consensus       114 ~~ggsea~~~al~~a~~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~  165 (427)
T 3fq8_A          114 VNSGTEACMAVLRIMRAYT-------------------------G--RDKIIKFEGCYHGHADMFLVKAGSGVATLGL-P  165 (427)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEEETCCCCSCGGGCSSCCTHHHHHTC-C
T ss_pred             eCCHHHHHHHHHHHHHHhh-------------------------C--CCEEEEECCCcCCCCHHHHHhcCCcccccCC-C
Confidence            4799999999999999884                         3  6789999999999999988887654221110 1


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +......+.     ....+++|      +++|++.+..+   ++++++||+||+++++|+++++++|+++|+++|++
T Consensus       166 ~~~~~~~~~~~~-----~~~~~~~d------~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~  231 (427)
T 3fq8_A          166 SSPGVPKKTTAN-----TLTTPYND------LEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLE  231 (427)
T ss_dssp             SCSSSCHHHHTT-----EEEEETTC------HHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH
T ss_pred             CCCCCCCcccCc-----eeecCCCC------HHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH
Confidence            10 100000000     00111233      67788888764   46899999999999999999999999999999974

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.63  E-value=9.1e-16  Score=126.58  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+++.|+..+  |.                 ++  +.+||.++.+|||.+..++++++...++..+.+
T Consensus       116 ~~ggsea~~~al~~~~~~~~~~--g~-----------------~~--~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~  174 (449)
T 3a8u_X          116 TDSGSECALTAVKMVRAYWRLK--GQ-----------------AT--KTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQ  174 (449)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCC
T ss_pred             cCcHHHHHHHHHHHHHHHHHhc--CC-----------------CC--CCEEEEECCCcCCCChhhhhccCChhhccccCC
Confidence            4799999999999999987654  43                 23  678999999999999999998875544444433


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .+...++.|. ++.++. ... .+.+...++++|++.|.+..  ++++++||+||+++.+|++++|++|+++|+++|+
T Consensus       175 ~~~~~~~v~~~~~~~~~~~-~~d-~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~  250 (449)
T 3a8u_X          175 PMQDVDHLPHTLLASNAYS-RGM-PKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICN  250 (449)
T ss_dssp             CSCSEEEECCCCCGGGTTC-SSS-CSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred             CCCCCeEecCCccccCccc-cCC-hHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHH
Confidence            2 2334455442 111100 000 01223445788888887541  2579999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       251 ~  251 (449)
T 3a8u_X          251 Q  251 (449)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.63  E-value=7.6e-16  Score=126.27  Aligned_cols=124  Identities=19%  Similarity=0.343  Sum_probs=76.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+++.++..+  |.                 ++  +..||.++.+|||.+.+++++++...++..+.+
T Consensus        95 ~~gg~ea~~~al~~~~~~~~~~--g~-----------------~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  153 (430)
T 3i4j_A           95 VSGGSEATESAVKLARQYHVER--GE-----------------PG--RFKVITRVPSYHGASLGSLAASGMGARRELYTP  153 (430)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC-----------------TT--CCEEEEETTC-----------------------
T ss_pred             eCcHHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEEeCCcCCCCcccccccCccccccccCC
Confidence            4799999999999999987654  43                 34  789999999999999999998876544433333


Q ss_pred             C-C--CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccccc-CCCCccCCHHHHHHHHH
Q psy4805          81 A-F--DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQS-EGGDNHGSNYFFQQLQK  155 (159)
Q Consensus        81 ~-~--~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG-~gGv~~pp~~fl~~lr~  155 (159)
                      . .  ++.++|+++ +++            ...++++|++.+.+..  ++++++||+||++| .+|+++++++|+++|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~------------~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~  219 (430)
T 3i4j_A          154 LMRPEAWPKLPKPDPARN------------GAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRD  219 (430)
T ss_dssp             --CGGGSCEECCCCTTSC------------HHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHH
T ss_pred             cCCCCCceEcCCCcccch------------hhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHH
Confidence            2 1  333444432 111            1233677888887641  25899999999999 99999999999999999


Q ss_pred             HhcC
Q psy4805         156 IGKK  159 (159)
Q Consensus       156 lc~~  159 (159)
                      +|++
T Consensus       220 l~~~  223 (430)
T 3i4j_A          220 ICDE  223 (430)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.61  E-value=3.4e-15  Score=122.38  Aligned_cols=126  Identities=26%  Similarity=0.256  Sum_probs=90.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+++.+.                         +  +.+||.++.+|||.+.+++++++... +..+.+
T Consensus       108 ~~gg~ea~~~a~~~~~~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~  159 (433)
T 1zod_A          108 LSTGAESNEAAIRMAKLVT-------------------------G--KYEIVGFAQSWHGMTGAAASATYSAG-RKGVGP  159 (433)
T ss_dssp             ESCHHHHHHHHHHHHHHHH-------------------------T--CCEEEEETTCCCCSSHHHHHTCCSSC-CSSSCC
T ss_pred             eCchHHHHHHHHHHHHHhh-------------------------C--CCeEEEECCCcCCCChhHHhhcCCcc-ccccCC
Confidence            4799999999999998763                         3  56899999999999999999987542 233333


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .+...++.|. +++++...   .+.+...++++|++.+.+..  .+++++||+||+++.+|+++++++|+++|+++|+
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~---~~~~~~~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~  234 (433)
T 1zod_A          160 AAVGSFAIPAPFTYRPRFERN---GAYDYLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE  234 (433)
T ss_dssp             CCTTEEEECCCCTTSCCCEET---TEECHHHHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred             CCCCceEecCCcccccccCCc---hhhhHHHHHHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence            2 2334455543 33333210   01112334778888887541  3589999999999999999999999999999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       235 ~  235 (433)
T 1zod_A          235 A  235 (433)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.61  E-value=1.7e-15  Score=124.42  Aligned_cols=117  Identities=24%  Similarity=0.353  Sum_probs=80.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+||.++                         +  +.+||.++++|||.+.+++++++....... .|
T Consensus       118 ~~sgseA~~~al~~ar~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-~p  169 (434)
T 2epj_A          118 VNSGTEATMTAIRLARGYT-------------------------G--RDLILKFDGCYHGSHDAVLVAAGSAAAHYG-VP  169 (434)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEEETCCCCSSGGGSEECC------C-EE
T ss_pred             eCCHHHHHHHHHHHHHHhh-------------------------C--CCeEEEEcCCcCCCCHHHHHhcCCCccccC-CC
Confidence            4799999999999999874                         2  568999999999999998887764211100 00


Q ss_pred             C-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 A-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      . .+......+.     ....+++|      +++|++.+.+.   ++++++||+||+++.+|++++|++|+++|+++|++
T Consensus       170 ~~~g~~~~~~~~-----~~~~~~~d------~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  235 (434)
T 2epj_A          170 TSAGVPEAVARL-----TLVTPYND------VEALERVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRE  235 (434)
T ss_dssp             SSTTCCHHHHTT-----EEEEETTC------HHHHHHHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccCc-----eEecCCCC------HHHHHHHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHH
Confidence            0 0100000000     00011223      66788888754   35899999999999999999999999999999984

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.59  E-value=2.6e-15  Score=123.30  Aligned_cols=113  Identities=28%  Similarity=0.352  Sum_probs=84.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+++.|+..+  |.                 +|  +.+||+++.+|||.+..++++++...++..+.|
T Consensus       120 ~~ggteA~~~al~~~~~~~~~~--~~-----------------~g--~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p  178 (420)
T 2pb2_A          120 MNSGTEANETAFKLARHYACVR--HS-----------------PF--KTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP  178 (420)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHH--TC-----------------TT--CCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred             eCCHHHHHHHHHHHHHHHhhhc--cC-----------------CC--CCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence            4799999999999999887554  32                 34  678999999999999999988875433333333


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++..+|             ++|      +++|++.+.      +++++||+||+++.+|+++++++++++|+++|++
T Consensus       179 ~~~~~~~~~-------------~~d------~~~le~~i~------~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~  233 (420)
T 2pb2_A          179 KPADIIHVP-------------FND------LHAVKAVMD------DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE  233 (420)
T ss_dssp             CCSCEEEEC-------------TTC------HHHHHHHCC------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred             CCCCeEEec-------------CCC------HHHHHHHhc------cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHH
Confidence            21 111111             122      566666653      3799999999999999999999999999999974

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.59  E-value=2.5e-15  Score=123.44  Aligned_cols=121  Identities=21%  Similarity=0.315  Sum_probs=82.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcc--ccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKY--IHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~--~~~~~   78 (159)
                      ++||+||++.|+|++|.++                         +  +.+||.++.+|||.+..++++++...  ++..+
T Consensus       110 ~~ggsea~~~al~~~~~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  162 (439)
T 3dxv_A          110 GHSGSDANEAAYRAIVKAT-------------------------G--RSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKA  162 (439)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------S--CCEEEEETTCCCCSSHHHHCC------------
T ss_pred             eCCHHHHHHHHHHHHHHHh-------------------------C--CCEEEEECCCCCCCcHHHHhhcCCCchhhcccc
Confidence            4799999999999999874                         2  56899999999999999999987643  44333


Q ss_pred             CCCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          79 IPAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        79 ~~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                      .+.. ++..+|+++.   ..     + .....++++|++.+.+.  ..+++++||+||+++++|++.++++|+++|+++|
T Consensus       163 ~~~~~~~~~~~~~~~---~~-----~-~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~  231 (439)
T 3dxv_A          163 DGLILLPYPDPYRPY---RN-----D-PTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC  231 (439)
T ss_dssp             -CEEEECCCCSSSCB---TT-----B-TTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred             CCCCCCcEEcCCCcc---cc-----c-ccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            3321 2233444321   00     0 00111477888888522  1468999999999999999999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       232 ~~  233 (439)
T 3dxv_A          232 RA  233 (439)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.56  E-value=7e-15  Score=119.01  Aligned_cols=112  Identities=33%  Similarity=0.457  Sum_probs=84.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+++++.++..+  |                  ++  +.+||.++.+|||.+..++++++...++..+.+
T Consensus        99 ~~gg~ea~~~al~~~~~~~~~~--g------------------~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  156 (395)
T 3nx3_A           99 TNSGTESIEGAMKTARKYAFNK--G------------------VK--GGQFIAFKHSFHGRTLGALSLTANEKYQKPFKP  156 (395)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--T------------------CT--TCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCS
T ss_pred             eCCHHHHHHHHHHHHHHHhhcc--C------------------CC--CCEEEEEcCCcCCCCHHHHhhcCCcccccccCC
Confidence            4799999999999999887554  3                  13  779999999999999999999886544433322


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +...+|             ++|      +++|++.+.      +++++||+||+++++|.++++++|+++|+++|++
T Consensus       157 ~~~~~~~~~-------------~~d------~~~l~~~l~------~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~  211 (395)
T 3nx3_A          157 LISGVKFAK-------------YND------ISSVEKLVN------EKTCAIILESVQGEGGINPANKDFYKALRKLCDE  211 (395)
T ss_dssp             CCSCEEEEC-------------TTC------HHHHHTTCC------TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHH
T ss_pred             CCCCcEEeC-------------CCC------HHHHHHhcc------CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHH
Confidence            11 111111             123      566666552      4789999999999999999999999999999974

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.54  E-value=2.8e-14  Score=116.83  Aligned_cols=115  Identities=20%  Similarity=0.313  Sum_probs=80.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+|+||.++                         +  +.+||.++.+|||.+.+++++++...... ..|
T Consensus       114 ~~~g~ea~~~al~~ar~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~-~~p  165 (424)
T 2e7u_A          114 VNSGTEATMSALRLARGYT-------------------------G--RPYIVKFRGNYHGHADGLLVEAGSGALTL-GVP  165 (424)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEETTCCCCCCGGGSEECCSSSCCB-CEE
T ss_pred             eCCHHHHHHHHHHHHHHhh-------------------------C--CCEEEEECCCcCCCcHHHHHhcCCccccc-CCC
Confidence            4799999999999999884                         2  56899999999999998888776431110 001


Q ss_pred             CC-CCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AF-DWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~-~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .. +......+. +..|      ++|      +++|++.+.+.   ++++++||+||+++++|++++|++|+++|+++ +
T Consensus       166 ~~~g~~~~~~~~~~~~~------~~d------~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~  229 (424)
T 2e7u_A          166 SSAGVPEEYAKLTLVLE------YND------PEGLREVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-K  229 (424)
T ss_dssp             SSTTCCHHHHTTEEEEC------TTC------HHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-G
T ss_pred             CCCCCCCccCCceEeCC------CCC------HHHHHHHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-H
Confidence            00 100000000 0111      223      66777777754   25799999999999999999999999999999 7


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       230 ~  230 (424)
T 2e7u_A          230 A  230 (424)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.49  E-value=2e-14  Score=118.76  Aligned_cols=115  Identities=18%  Similarity=0.220  Sum_probs=66.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+++||.++                         +  +.+||.++.+|||.+..++++++.. +..   +
T Consensus       119 ~~gg~eA~~~al~~ar~~~-------------------------~--~~~vi~~~~~yhg~~~~~~~~~~~~-~~~---~  167 (453)
T 2cy8_A          119 TGSGTETTLLALRVARAFT-------------------------G--RRMILRFEGHYHGWHDFSASGYNSH-FDG---Q  167 (453)
T ss_dssp             ESCHHHHHHHHHHHHHHHH-------------------------C--CCEEEEECC------------------------
T ss_pred             eCCHHHHHHHHHHHHHHhh-------------------------C--CCEEEEEcCCcCCCchhhHhhcCCc-cCC---C
Confidence            4799999999999999874                         2  5689999999999999887766531 000   0


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..  ..+|.+..  +.....+++|      +++|++.|.+.   ++++++||+||+++.+|+++++++|+++|+++|++
T Consensus       168 ~~--~g~~~~~~--~~~~~~~~~d------~~~le~~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~  233 (453)
T 2cy8_A          168 PA--PGVLPETT--ANTLLIRPDD------IEGMREVFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQ  233 (453)
T ss_dssp             ----------CG--GGEEEECTTC------HHHHHHHHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHH
T ss_pred             cC--CCCCcccc--CceeecCCCC------HHHHHHHHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            00  00110000  0000001223      66788888754   35899999999999999999999999999999974

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.45  E-value=8.5e-13  Score=108.04  Aligned_cols=124  Identities=23%  Similarity=0.389  Sum_probs=87.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCcc-ccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKY-IHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~-~~~~~~   79 (159)
                      +++|+||++.|+++++.++..+  |+                    ++.+||.++.+|||.+..++++++... ++..+.
T Consensus       109 ~~ggtea~~~ai~~~~~~~~~~--g~--------------------~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~  166 (429)
T 1s0a_A          109 ADSGSVAVEVAMKMALQYWQAK--GE--------------------ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK  166 (429)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHH--TC--------------------CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred             eCCHHHHHHHHHHHHHHHhccc--CC--------------------CCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence            4799999999999998876433  32                    256899999999999999998887432 222332


Q ss_pred             CC-CCCCcccCCCCC--CCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHH
Q psy4805          80 PA-FDWPIASFPKYK--YPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQK  155 (159)
Q Consensus        80 ~~-~~~~~~p~p~~~--~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~  155 (159)
                      +. .+...+|.|...  ..+.    ..|      +++|++.+.+.   .+++++||+||+ ++.+|+++++++|+++|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~----~~d------~~~l~~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~  233 (429)
T 1s0a_A          167 GYLPENLFAPAPQSRMDGEWD----ERD------MVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRK  233 (429)
T ss_dssp             TTSCCCEEECCCCSBC-CCCC----GGG------GHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHH
T ss_pred             CCCCCceEeCCCcccccccch----HHH------HHHHHHHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHH
Confidence            22 123344444210  0010    012      56777777653   357999999999 9999999999999999999


Q ss_pred             HhcC
Q psy4805         156 IGKK  159 (159)
Q Consensus       156 lc~~  159 (159)
                      +|++
T Consensus       234 l~~~  237 (429)
T 1s0a_A          234 ICDR  237 (429)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.44  E-value=3.8e-13  Score=110.13  Aligned_cols=129  Identities=33%  Similarity=0.414  Sum_probs=87.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      +++|+||++.|+++++.++                            +.+||.++.+|||.+..++++++.. .++..+.
T Consensus       110 ~~gg~ea~~~ai~~~~~~~----------------------------~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~  161 (419)
T 2eo5_A          110 SNSGTEAIEASIKVVKNTG----------------------------RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVG  161 (419)
T ss_dssp             ESSHHHHHHHHHHHHHTTS----------------------------CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSC
T ss_pred             eCchHHHHHHHHHHHHHhh----------------------------CCcEEEECCCcCCCCHhhHhhcCCccccccccC
Confidence            4789999999999987651                            4589999999999999999998754 3333333


Q ss_pred             CC-CCCCcccCCC-CCCCCccchhh-h-hHHHHHHHHHHH-HHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHH
Q psy4805          80 PA-FDWPIASFPK-YKYPLEENERE-N-KAEDEKCLAEVE-DLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQ  154 (159)
Q Consensus        80 ~~-~~~~~~p~p~-~~~~~~~~~~~-~-~~~~~~~~~~le-~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr  154 (159)
                      +. .++..+|.++ ++.++...... + +.+. .++++|+ +.+.+.. +++++++||+||+++.+|+++++++|+++|+
T Consensus       162 ~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~  239 (419)
T 2eo5_A          162 PFMPGVIHVPYPNPYRNPWHINGYENPSELVN-RVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQ  239 (419)
T ss_dssp             CCCTTEEEECCCCSSSCTTCCCTTTCHHHHHH-HHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred             CCCCCCEEECCCccccccccccccccchhhHH-HHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCCCccCCHHHHHHHH
Confidence            32 1334455543 33222100000 0 0111 3467788 7776421 1247899999999999999999999999999


Q ss_pred             HHhcC
Q psy4805         155 KIGKK  159 (159)
Q Consensus       155 ~lc~~  159 (159)
                      ++|++
T Consensus       240 ~l~~~  244 (419)
T 2eo5_A          240 KLAKK  244 (419)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.37  E-value=3.4e-12  Score=102.92  Aligned_cols=116  Identities=26%  Similarity=0.346  Sum_probs=84.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+++++.++... +|.+                +|  +.+||++..+|||.+.+++++++...++..+.+
T Consensus        99 ~~~gt~a~~~al~~~~~~~~~~-~~~~----------------~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (392)
T 3ruy_A           99 MNTGAEAVETAIKTARRWAYDV-KKVE----------------AN--RAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGP  159 (392)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT-SCCC----------------TT--CCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCS
T ss_pred             eCcHHHHHHHHHHHHHHhhhhc-cCCC----------------CC--CcEEEEEcCCcCCCCHhhhhccCChhhccccCC
Confidence            4799999999999998774322 1321                23  679999999999999999999876544433322


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ... .....           +++|      +++|++.+.      .++++|++||+++..|++.++++|+++|.++|++
T Consensus       160 ~~~-~~~~~-----------~~~d------~~~l~~~l~------~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~  214 (392)
T 3ruy_A          160 MLP-GIIVI-----------PYGD------LEALKAAIT------PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKK  214 (392)
T ss_dssp             CCS-SEEEE-----------CTTC------HHHHHHHCC------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHT
T ss_pred             CCC-CCeee-----------Cccc------HHHHHHHhc------cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence            210 00011           1123      566666653      4799999999999999999999999999999985

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.32  E-value=4.3e-12  Score=102.51  Aligned_cols=113  Identities=32%  Similarity=0.399  Sum_probs=83.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|+++++.++..+  |.                 +|  +..||.++.+|||.+..++.+++...++..+.+
T Consensus       102 ~~gg~~a~~~al~~~~~~~~~~--~~-----------------~g--~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~  160 (406)
T 4adb_A          102 CNSGAEANEAALKLARKFAHDR--YG-----------------SH--KSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP  160 (406)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHH--TC-----------------TT--CCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS
T ss_pred             eCcHHHHHHHHHHHHHHHHHhc--CC-----------------CC--CcEEEEECCCcCCCcHHHhhccCCccccccCCC
Confidence            4799999999999999876554  32                 34  679999999999999999998876544333322


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. +...+|             ++|      +++|++.+.      +++++||+||+++.||+++++++++++|.++|++
T Consensus       161 ~~~~~~~~~-------------~~d------~~~l~~~l~------~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~  215 (406)
T 4adb_A          161 LPADIRHAA-------------YND------INSASALID------DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNR  215 (406)
T ss_dssp             CCSSEEEEC-------------TTC------HHHHHTTCS------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred             CCCCceEeC-------------CCc------HHHHHHHhc------CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence            11 111111             123      556665543      4799999999999999999999999999999974

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.22  E-value=9e-11  Score=95.41  Aligned_cols=122  Identities=27%  Similarity=0.306  Sum_probs=82.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCc-cccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSK-YIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~-~~~~~~~   79 (159)
                      +++|+||++.|+++||.+.                         +  +.+||.++.+|||.+..++.+++.. .++..+.
T Consensus       108 ~~g~~~a~~~~~~~a~~~~-------------------------~--~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~  160 (426)
T 1sff_A          108 VTTGSEAVENAVKIARAAT-------------------------K--RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  160 (426)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------T--CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             eCchHHHHHHHHHHHHHhh-------------------------C--CCeEEEECCCcCCCchHhhhhcCCccccccccC
Confidence            4799999999999998774                         1  3389999999999998888887643 1222222


Q ss_pred             CCC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          80 PAF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        80 ~~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      +.. ++..+|.+.   .+.     + ....-.+++|++.+.... .+.++++||+||++++.|++.+|++|+++|.++|+
T Consensus       161 ~~~~~v~~v~~~~---~~~-----~-~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~  230 (426)
T 1sff_A          161 LMPGHVYRALYPC---PLH-----G-ISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCD  230 (426)
T ss_dssp             CCCSSEEEECCCB---GGG-----T-BCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHH
T ss_pred             CCCCCcEEeCCCc---ccc-----c-cchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHH
Confidence            211 122234321   000     0 001122677777776421 12478999999999999989999999999999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       231 ~  231 (426)
T 1sff_A          231 E  231 (426)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.03  E-value=4.5e-10  Score=90.67  Aligned_cols=112  Identities=27%  Similarity=0.364  Sum_probs=78.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|++.++.+....   .                 +|  +..||.++.+|||.+..++.+++....+..+.|
T Consensus       103 ~~gg~~a~~~al~~~~~~~~~~---~-----------------~~--~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p  160 (397)
T 2ord_A          103 ANTGTEANEAAIKIARKYGKKK---S-----------------EK--KYRILSAHNSFHGRTLGSLTATGQPKYQKPFEP  160 (397)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHH---C-----------------TT--CCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCS
T ss_pred             eCCHHHHHHHHHHHHHHHhhcC---C-----------------CC--CceEEEEcCCcCCCchhhhhccCChhhccccCC
Confidence            4799999999999988764321   1                 23  567999999999999877777764322222222


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++..+|             .+|      +++|++.+.      +++++|++||+++..|+++++.+++++|.++|++
T Consensus       161 ~~~~~~~~~-------------~~d------~~~l~~~l~------~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~  215 (397)
T 2ord_A          161 LVPGFEYFE-------------FNN------VEDLRRKMS------EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDE  215 (397)
T ss_dssp             CCTTEEEEC-------------TTC------HHHHHHHCC------TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHH
T ss_pred             CCCCeeEec-------------CCC------HHHHHHHhh------cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHH
Confidence            21 111111             122      556666653      3789999999999999988899999999999974

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.98  E-value=1.4e-09  Score=87.71  Aligned_cols=108  Identities=25%  Similarity=0.418  Sum_probs=75.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||+||++.|++.++.+.                         .  +..||.+..+|||.+..++.+++....+..+.|
T Consensus       110 ~~gg~~a~~~al~~~~~~~-------------------------~--~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p  162 (395)
T 1vef_A          110 VNSGTEANEAALKFARAHT-------------------------G--RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLP  162 (395)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------S--CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCS
T ss_pred             cCcHHHHHHHHHHHHHHHh-------------------------C--CCeEEEEcCCcCCCchhhhhhcCCcccccccCC
Confidence            4789999999999887653                         1  457999999999999888777664322111222


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ... .....|           ..+      +++|++.+.      +++++|+++|+++..|.+.++++++++|.++|++
T Consensus       163 ~~~-~~~~~~-----------~~d------~~~l~~~i~------~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~  217 (395)
T 1vef_A          163 LVE-PVEFIP-----------YND------VEALKRAVD------EETAAVILEPVQGEGGVRPATPEFLRAAREITQE  217 (395)
T ss_dssp             CSS-CEEEEC-----------TTC------HHHHHHHCC------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred             CCC-CeeEeC-----------CCc------HHHHHHHhc------cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHH
Confidence            110 000111           112      556666653      3689999999999899999999999999999974

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.94  E-value=2.1e-09  Score=85.81  Aligned_cols=113  Identities=35%  Similarity=0.451  Sum_probs=77.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.|++++|.+..+   +.                 +|  +.+||....+||+....++.+++.......+.+
T Consensus        92 ~~g~t~a~~~~~~~~~~~~~~---~~-----------------~g--~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~  149 (375)
T 2eh6_A           92 ANSGTESVEAAIKLARKYWRD---KG-----------------KN--KWKFISFENSFHGRTYGSLSATGQPKFHKGFEP  149 (375)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHH---TT-----------------CC--CCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCS
T ss_pred             eCchHHHHHHHHHHHHHHhcc---CC-----------------CC--CCEEEEECCCcCCCchhhhhhcCCccccCCCCC
Confidence            479999999999988766421   11                 34  578999999999999888777654322111111


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ......|           ..|      +++|++.+.      +++.+|+++|.++..|++.++++++++|.++|++
T Consensus       150 ~~-~~~~~~~-----------~~d------~~~l~~~l~------~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~  204 (375)
T 2eh6_A          150 LV-PGFSYAK-----------LND------IDSVYKLLD------EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE  204 (375)
T ss_dssp             CC-SSEEEEC-----------TTC------HHHHHTTCC------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred             CC-CCceeCC-----------Cch------HHHHHHHhc------CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHH
Confidence            10 0001111           112      455655542      3789999999999999998999999999999974

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=98.44  E-value=4.8e-07  Score=74.30  Aligned_cols=120  Identities=15%  Similarity=0.074  Sum_probs=67.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCC-ceEEEEcCCCCccchhhhhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPN-LSILSFKGAFHGRTLGCLSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r-~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~   79 (159)
                      ++|||||++.|+++++..+... +|.                  .  | ..||..  .||+.|..+..............
T Consensus        95 t~~gt~A~~~al~~~~~~~~~~-~G~------------------~--~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~  151 (467)
T 2oqx_A           95 THQGRGAEQIYIPVLIKKREQE-KGL------------------D--RSKMVAFS--NYFFDTTQGHSQINGCTVRNVYI  151 (467)
T ss_dssp             EC--CCSHHHHHHHHHHHHHHH-HCC------------------C--TTTCEEEE--SSCCHHHHHHHHHTTCEEEECBC
T ss_pred             cCCcHHHHHHHHHHHhcccccc-CCC------------------C--ccceEEec--ccccccchhhhhccCcceeeccc
Confidence            4789999999999998652111 021                  1  2 456665  69988765544322111000000


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .    ..++. ....+....   .|      +++|++.|....  .+++++||+||+++.+|..+++.+++++|+++|++
T Consensus       152 ~----~~~~~-~~~~~~~~~---~d------~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~  215 (467)
T 2oqx_A          152 K----EAFDT-GVRYDFKGN---FD------LEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK  215 (467)
T ss_dssp             T----TTTCT-TSCCTTTTC---BC------HHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred             c----ccccC-CCCCCccCC---cC------HHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence            0    00110 000111000   12      677888887531  14789999999998864467889999999999985

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=98.41  E-value=2.5e-07  Score=75.28  Aligned_cols=101  Identities=12%  Similarity=-0.018  Sum_probs=68.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|+||++.|++.++.                          +   ..+||.+..+||+.+..+.......        
T Consensus       125 ~~g~~ea~~~a~~~~~~--------------------------~---gd~Vi~~~~~y~~~~~~~~~~g~~~--------  167 (421)
T 3l8a_A          125 IDGVVPAISIALQAFSE--------------------------K---GDAVLINSPVYYPFARTIRLNDHRL--------  167 (421)
T ss_dssp             ESCHHHHHHHHHHHHSC--------------------------T---EEEEEEEESCCHHHHHHHHHTTEEE--------
T ss_pred             cCCHHHHHHHHHHHhcC--------------------------C---CCEEEECCCCcHHHHHHHHHCCCEE--------
Confidence            47899999999997621                          1   4689999999999876554432210        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          ..+|.......+  .   .|      +++|++.+.+     .++++||+|++++.+| +++|++++++|+++|++
T Consensus       168 ----~~~~~~~~~~~~--~---~d------~~~le~~i~~-----~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~  225 (421)
T 3l8a_A          168 ----VENSLQIINGRF--E---ID------FEQLEKDIID-----NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKK  225 (421)
T ss_dssp             ----EEEECEEETTEE--E---CC------HHHHHHHHHH-----TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHH
T ss_pred             ----EeccccccCCCe--e---eC------HHHHHHHhhc-----cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHH
Confidence                112221000000  0   12      5677777764     3789999999999999 56788889999999974

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.36  E-value=1.7e-06  Score=70.97  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+....  .+++++||+||+++.+|.++++.+++++|+++|++
T Consensus       169 ~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~  215 (467)
T 1ax4_A          169 IKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ  215 (467)
T ss_dssp             HHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHH
Confidence            567788887541  24799999999998875567889999999999984

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=97.93  E-value=1.9e-05  Score=64.36  Aligned_cols=93  Identities=16%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||++|++.|++..   +     +                      +...|.+...+|+....++..++..        
T Consensus       130 ~~sGs~a~~~al~~l---~-----~----------------------~gd~vl~~~~~h~~~~~~~~~~g~~--------  171 (427)
T 2w8t_A          130 FSTGYMANLGIISTL---A-----G----------------------KGEYVILDADSHASIYDGCQQGNAE--------  171 (427)
T ss_dssp             ESCHHHHHHHHHHHH---S-----C----------------------TTCEEEEETTCCHHHHHHHHHSCSE--------
T ss_pred             ecCcHHHHHHHHHHh---c-----C----------------------CCCEEEECCcccHHHHHHHHHcCCe--------
Confidence            378999999988763   1     1                      2235556778888887766655421        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                           .+++|.           ++      +++|++.+....  ..++++||+||+++..|.+.+    +++|+++|++
T Consensus       172 -----~~~~~~-----------~d------~~~le~~l~~~~--~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~  222 (427)
T 2w8t_A          172 -----IVRFRH-----------NS------VEDLDKRLGRLP--KEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKK  222 (427)
T ss_dssp             -----EEEECT-----------TC------HHHHHHHHHTSC--SSSCEEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             -----eEEeCC-----------CC------HHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC----HHHHHHHHHH
Confidence                 112221           12      567777877531  127899999999998998765    8999999974

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=97.81  E-value=5.5e-05  Score=60.95  Aligned_cols=89  Identities=19%  Similarity=0.116  Sum_probs=62.2

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +||++|++.|++...                            +  +...|.+...+|+.+..++.+.+..         
T Consensus       126 ~sGt~a~~~~l~~~~----------------------------~--~gd~Vl~~~~~~~~~~~~~~~~g~~---------  166 (409)
T 3kki_A          126 QSGWNANVGLLQTIC----------------------------Q--PNTNVYIDFFAHMSLWEGARYANAQ---------  166 (409)
T ss_dssp             SCHHHHHHHHHHHHC----------------------------C--TTCEEEEETTSCHHHHHHHHHTTCE---------
T ss_pred             cchHHHHHHHHHHhc----------------------------C--CCCEEEECCCcCHHHHHHHHHcCCe---------
Confidence            689999999988441                            1  2245557788888887777665422         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          .++++.           +|      +++|++.+...     +.++||+|++++..|.+.+    +++|+++|++
T Consensus       167 ----~~~~~~-----------~d------~~~le~~l~~~-----~~~~vi~~~~~nptG~~~~----l~~l~~la~~  214 (409)
T 3kki_A          167 ----AHPFMH-----------NN------CDHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP----LAELVNISKE  214 (409)
T ss_dssp             ----EEEECT-----------TC------HHHHHHHHHHH-----CSCEEEEESBCTTTCCBCC----HHHHHHHHHH
T ss_pred             ----EEEecC-----------CC------HHHHHHHHHhc-----CCeEEEECCCCCCCCCcCC----HHHHHHHHHH
Confidence                112221           12      56777888753     3489999999999898766    9999999974

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=97.65  E-value=9.3e-05  Score=60.46  Aligned_cols=105  Identities=11%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||++|++.|++.+.        +                  +|  .   |....+||+.+..++...|....      
T Consensus        96 ~~~gt~a~~~al~~l~--------~------------------~g--d---i~~~~~~~~~~~~~~~~~G~~~~------  138 (456)
T 2ez2_A           96 THQGRGAENLLSQLAI--------K------------------PG--Q---YVAGNMYFTTTRYHQEKNGAVFV------  138 (456)
T ss_dssp             ESSHHHHHHHHHHHHC--------C------------------TT--C---EEEESSCCHHHHHHHHHTTCEEE------
T ss_pred             eCCcHHHHHHHHHHhC--------C------------------CC--C---EeccccccchhHHHHHHcCCEEE------
Confidence            4789999999998761        1                  34  3   77788999998777766653211      


Q ss_pred             CCCCCcccC-----CCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEc-ccccCCCCccCCHHHHHHHH
Q psy4805          81 AFDWPIASF-----PKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVE-PIQSEGGDNHGSNYFFQQLQ  154 (159)
Q Consensus        81 ~~~~~~~p~-----p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~E-PiqG~gGv~~pp~~fl~~lr  154 (159)
                           .++.     |....++...   .|      +++|++.+....  ...+++|+++ |.++..|+ +.+.+++++|.
T Consensus       139 -----~v~~~~~~~~~~~~~~~~~---~d------~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~-~~~~~~l~~i~  201 (456)
T 2ez2_A          139 -----DIVRDEAHDAGLNIAFKGD---ID------LKKLQKLIDEKG--AENIAYICLAVTVNLAGGQ-PVSMANMRAVR  201 (456)
T ss_dssp             -----ECBCGGGGCTTCCCSCTTC---BC------HHHHHHHHHHHC--GGGEEEEEEESSBTTTTSB-CCCHHHHHHHH
T ss_pred             -----EecccccccccccccccCC---CC------HHHHHHHHHhcc--ccceeEEEEeccCCCCCCc-cCCHHHHHHHH
Confidence                 0111     0000011000   12      567777776531  2458999999 67767785 67899999999


Q ss_pred             HHhcC
Q psy4805         155 KIGKK  159 (159)
Q Consensus       155 ~lc~~  159 (159)
                      ++|++
T Consensus       202 ~la~~  206 (456)
T 2ez2_A          202 ELTEA  206 (456)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.64  E-value=0.00015  Score=57.60  Aligned_cols=91  Identities=16%  Similarity=0.255  Sum_probs=61.8

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +|||+|++.|++..   .     +                      +..+|.+...+|+.+..++...|..         
T Consensus       106 ~sGt~a~~~~~~~~---~-----~----------------------~gd~v~~~~~~~~~~~~~~~~~g~~---------  146 (384)
T 1bs0_A          106 ISGFAANQAVIAAM---M-----A----------------------KEDRIAADRLSHASLLEAASLSPSQ---------  146 (384)
T ss_dssp             SCHHHHHHHHHHHH---C-----C----------------------TTCEEEEETTCCHHHHHHHHTSSSE---------
T ss_pred             CCcHHHHHHHHHHh---C-----C----------------------CCcEEEEcccccHHHHHHHHHcCCC---------
Confidence            68999999998753   1     1                      2346677888999888777665422         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          .+..|.           .|      .++|++.+...   ....++|++++.+...|.+.+    +++|.++|++
T Consensus       147 ----~~~~~~-----------~d------~~~l~~~l~~~---~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  196 (384)
T 1bs0_A          147 ----LRRFAH-----------ND------VTHLARLLASP---CPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQ  196 (384)
T ss_dssp             ----EEEECT-----------TC------HHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC----HHHHHHHHHH
T ss_pred             ----EEEeCC-----------CC------HHHHHHHHHhc---CCCCeEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence                111221           12      45677777642   224789999999998898775    7899999974

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=97.61  E-value=9.8e-05  Score=57.76  Aligned_cols=102  Identities=12%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchh-hhhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLG-CLSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~g-a~s~s~~~~~~~~~~   79 (159)
                      +++|++|++.|++.++.                          +   ..+||....+||+.... .+...|.        
T Consensus        72 ~~g~t~a~~~~~~~~~~--------------------------~---gd~vl~~~~~~~~~~~~~~~~~~g~--------  114 (359)
T 1svv_A           72 ISGGTQTNLIACSLALR--------------------------P---WEAVIATQLGHISTHETGAIEATGH--------  114 (359)
T ss_dssp             ESCHHHHHHHHHHHHCC--------------------------T---TEEEEEETTSHHHHSSTTHHHHTTC--------
T ss_pred             eCCchHHHHHHHHHHhC--------------------------C---CCEEEEcccchHHHHHHHHHhcCCC--------
Confidence            47899999999987731                          1   45899999999987653 1222221        


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhc-cCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYN-KKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~-~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                         .+..+|..+    +.     .+      +++|++.+.... ..+.++.+|++++. +..|.+. |++++++|.++|+
T Consensus       115 ---~~~~v~~~~----~~-----~d------~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~  174 (359)
T 1svv_A          115 ---KVVTAPCPD----GK-----LR------VADIESALHENRSEHMVIPKLVYISNT-TEVGTQY-TKQELEDISASCK  174 (359)
T ss_dssp             ---CEEEECCTT----SC-----CC------HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC-CHHHHHHHHHHHH
T ss_pred             ---eeEEEeCCC----Ce-----ec------HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec-CHHHHHHHHHHHH
Confidence               112223211    10     12      566777776520 01235889999987 5678755 4799999999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       175 ~  175 (359)
T 1svv_A          175 E  175 (359)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=97.53  E-value=0.00012  Score=58.28  Aligned_cols=94  Identities=12%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +|||+|++.+++...        +                      +...|.+...+|+.+..++.+.+...        
T Consensus       110 ~sGt~a~~~~l~~~~--------~----------------------~gd~v~~~~~~~~~~~~~~~~~g~~~--------  151 (399)
T 3tqx_A          110 SSCFDANGGLFETLL--------G----------------------PEDAIISDELNHASIIDGIRLCKAQR--------  151 (399)
T ss_dssp             SCHHHHHHTTHHHHC--------C----------------------TTCEEEEETTCCHHHHHHHHSCCSEE--------
T ss_pred             CchHHHHHHHHHHhc--------C----------------------CCCEEEECCcccHHHHHHHHHcCCce--------
Confidence            588999998886431        1                      22455667778888777666655321        


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                           ++.|.           .+      .+++++.+......+.++++|+++++++..|.+.+    +++|.++|++
T Consensus       152 -----~~~~~-----------~d------~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  203 (399)
T 3tqx_A          152 -----YRYKN-----------NA------MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADK  203 (399)
T ss_dssp             -----EEECT-----------TC------TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             -----eEeCC-----------CC------HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHH
Confidence                 11221           01      23455556554211237999999999999998766    8999999974

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=97.52  E-value=9.5e-05  Score=59.48  Aligned_cols=99  Identities=13%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhc--CCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLST--THSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~--s~~~~~~~~~   78 (159)
                      +++|++|++.|++..+.++.    +                     ++..||....+||+.......+  .+..      
T Consensus        91 ~~ggt~a~~~a~~~l~~~~~----~---------------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~------  139 (423)
T 3lvm_A           91 TSGATESDNLAIKGAANFYQ----K---------------------KGKHIITSKTEHKAVLDTCRQLEREGFE------  139 (423)
T ss_dssp             ESSHHHHHHHHHHHHHHHHT----T---------------------TCCEEEEETTSCHHHHHHHHHHHHTTCE------
T ss_pred             eCChHHHHHHHHHHHHHhhc----c---------------------CCCEEEECCccchHHHHHHHHHHHcCCE------
Confidence            47899999999997776541    1                     1468999999999876444332  1211      


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                           +..+|... ...       .|      +++|++.+.      .++++|+++++++..|.+.+    +++|.++|+
T Consensus       140 -----~~~v~~~~-~~~-------~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~  190 (423)
T 3lvm_A          140 -----VTYLAPQR-NGI-------ID------LKELEAAMR------DDTILVSIMHVNNEIGVVQD----IAAIGEMCR  190 (423)
T ss_dssp             -----EEEECCCT-TSC-------CC------HHHHHHHCC------TTEEEEECCSBCTTTCBBCC----HHHHHHHHH
T ss_pred             -----EEEeccCC-CCc-------cC------HHHHHHhcC------CCcEEEEEeCCCCCCccccC----HHHHHHHHH
Confidence                 11222211 000       12      456666653      36899999999998998766    888999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       191 ~  191 (423)
T 3lvm_A          191 A  191 (423)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=97.52  E-value=6.2e-05  Score=59.92  Aligned_cols=102  Identities=5%  Similarity=-0.052  Sum_probs=63.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++.++++. .   .                  +   +.+||....+|||.......+......      
T Consensus        91 ~~g~t~a~~~~~~~~~~~~-~---~------------------~---gd~vl~~~~~~~~~~~~~~~~~~~~g~------  139 (406)
T 1kmj_A           91 VRGTTEGINLVANSWGNSN-V---R------------------A---GDNIIISQMEHHANIVPWQMLCARVGA------  139 (406)
T ss_dssp             ESSHHHHHHHHHHHTHHHH-C---C------------------T---TCEEEEETTCCGGGTHHHHHHHHHHTC------
T ss_pred             eCChhHHHHHHHHHhhhhc-C---C------------------C---CCEEEEecccchHHHHHHHHHHHhCCC------
Confidence            3688999999999886542 1   1                  1   468999999999986543222110000      


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        .+..+|....   ..     .+      +++|++.+.      .++.+|++++++...|.+.+    +++|.++|++
T Consensus       140 --~~~~~~~~~~---~~-----~d------~~~l~~~l~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  192 (406)
T 1kmj_A          140 --ELRVIPLNPD---GT-----LQ------LETLPTLFD------EKTRLLAITHVSNVLGTENP----LAEMITLAHQ  192 (406)
T ss_dssp             --EEEEECBCTT---SC-----BC------GGGHHHHCC------TTEEEEEEESBCTTTCCBCC----HHHHHHHHHH
T ss_pred             --EEEEEecCCC---CC-----cC------HHHHHHHhc------cCCeEEEEeCCCccccCcCC----HHHHHHHHHH
Confidence              0112222110   00     11      344555542      36899999999998898776    8999999974

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=97.52  E-value=5.8e-05  Score=61.11  Aligned_cols=93  Identities=13%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||++|++.|++...     +                     +   ..+||+....|||.......+....    +   
T Consensus        87 ~~sGt~A~~~al~~~~-----~---------------------~---gd~Vi~~~~~y~~~~~~~~~~~~~~----g---  130 (392)
T 3qhx_A           87 FSSGMAAADCALRAML-----R---------------------P---GDHVVIPDDAYGGTFRLIDKVFTGW----N---  130 (392)
T ss_dssp             ESSHHHHHHHHHHHHC-----C---------------------T---TCEEEEETTCCHHHHHHHHHTGGGG----T---
T ss_pred             ECCHHHHHHHHHHHHh-----C---------------------C---CCEEEEeCCCcchHHHHHHHHHHhc----C---
Confidence            3799999999998651     1                     1   4589999999987543221111100    0   


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                       ..+.++|.             ++      ++++++.+.      +++.+|++|++++..|.+.+    +++|.++|++
T Consensus       131 -~~~~~v~~-------------~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  179 (392)
T 3qhx_A          131 -VEYTPVAL-------------AD------LDAVRAAIR------PTTRLIWVETPTNPLLSIAD----IAGIAQLGAD  179 (392)
T ss_dssp             -CEEEEECT-------------TC------HHHHHHHCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             -cEEEEeCC-------------CC------HHHHHHhhC------CCCeEEEEECCCCCCcEEec----HHHHHHHHHH
Confidence             01111221             12      456666553      47899999999999898765    8999999974

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=97.45  E-value=0.00017  Score=58.41  Aligned_cols=42  Identities=17%  Similarity=0.161  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|+++..+...|++ +|++++++|.++|++
T Consensus       172 ~~~l~~~l~------~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~  213 (429)
T 1yiz_A          172 NNELEALFN------EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKK  213 (429)
T ss_dssp             HHHHHHHCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc------cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHH
Confidence            556666552      368899999888888876 468999999999974

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=97.42  E-value=0.00029  Score=58.77  Aligned_cols=102  Identities=12%  Similarity=0.022  Sum_probs=66.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.|++.++.+..++ +|.                    .+..||....+|++.... +...|..        
T Consensus       166 t~ggt~a~~~al~a~~~~g~~~-~g~--------------------~~d~Vi~~~~~~~~~~~~-~~~~G~~--------  215 (514)
T 3mad_A          166 TSGGTESLLLAMKTYRDWARAT-KGI--------------------TAPEAVVPVSAHAAFDKA-AQYFGIK--------  215 (514)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHH-HCC--------------------SSCEEEEETTSCTHHHHH-HHHHTCE--------
T ss_pred             cCcHHHHHHHHHHHHHHHhhhh-cCC--------------------CCCeEEEeCccchHHHHH-HHHcCCe--------
Confidence            4789999999999999886433 121                    267899999888875433 2222211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|... .  +.     .|      +++|++.+.      .++++|+++..+...|.+.+    +++|.++|++
T Consensus       216 ---v~~v~~~~-~--~~-----~d------~~~Le~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  267 (514)
T 3mad_A          216 ---LVRTPLDA-D--YR-----AD------VAAMREAIT------PNTVVVAGSAPGYPHGVVDP----IPEIAALAAE  267 (514)
T ss_dssp             ---EEEECBCT-T--SC-----BC------HHHHHHHCC------TTEEEEEEETTCTTTCCCCC----HHHHHHHHHH
T ss_pred             ---eEEeeeCC-C--CC-----CC------HHHHHHHhc------cCCEEEEEeCCCCCCccccC----HHHHHHHHHH
Confidence               12233211 0  00     12      566766653      36889999999988898765    7899999974

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=97.41  E-value=5.7e-05  Score=61.62  Aligned_cols=39  Identities=13%  Similarity=0.040  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      +++++|++|++++..|.+.+    +++|+++|++
T Consensus       142 ~~~l~~~i~------~~~~~v~~e~~~np~G~~~~----l~~i~~la~~  180 (400)
T 3nmy_A          142 PAAFKAAIR------ADTKMVWIETPTNPMLKLVD----IAAIAVIARK  180 (400)
T ss_dssp             HHHHHHHCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHhc------cCCCEEEEECCCCCCCeeec----HHHHHHHHHH
Confidence            456666653      47899999999999998774    9999999974

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=97.34  E-value=0.00042  Score=55.22  Aligned_cols=103  Identities=7%  Similarity=-0.049  Sum_probs=65.5

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.++++.+.+.                        +   +.+||....+||+....+......          
T Consensus        98 ~g~~~a~~~~~~~~~~~~------------------------~---gd~vl~~~p~~~~~~~~~~~~g~~----------  140 (394)
T 2ay1_A           98 VGGTGALRQALELARMAN------------------------P---DLRVFVSDPTWPNHVSIMNFMGLP----------  140 (394)
T ss_dssp             EHHHHHHHHHHHHHHHHC------------------------T---TCCEEEEESCCHHHHHHHHHHTCC----------
T ss_pred             CCchhHHHHHHHHHHhcC------------------------C---CCEEEEcCCCChhHHHHHHHcCCc----------
Confidence            579999999999887651                        1   357999999999987654433211          


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|.... ..+.     .+      ++++++.+...   .....++|++..+...|. .+|.+++++|.++|++
T Consensus       141 --~~~~~~~~~-~~~~-----~d------~~~l~~~l~~~---~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~  200 (394)
T 2ay1_A          141 --VQTYRYFDA-ETRG-----VD------FEGMKADLAAA---KKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEK  200 (394)
T ss_dssp             --EEEEECEET-TTTE-----EC------HHHHHHHHHTC---CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHH
T ss_pred             --eEEEecccc-cCCc-----cC------HHHHHHHHHhC---CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHH
Confidence              111222100 0000     12      56677777642   224566777777777786 5678999999999974

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.33  E-value=0.00013  Score=59.47  Aligned_cols=93  Identities=14%  Similarity=0.088  Sum_probs=60.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +||++|++.|++..  .   +                     +   +..||+...+||+.......+....    +    
T Consensus        80 ~sGt~A~~~~l~~~--~---~---------------------~---gd~vi~~~~~~~~~~~~~~~~~~~~----g----  122 (421)
T 2ctz_A           80 ASGHAAQFLALTTL--A---Q---------------------A---GDNIVSTPNLYGGTFNQFKVTLKRL----G----  122 (421)
T ss_dssp             SSHHHHHHHHHHHH--C---C---------------------T---TCEEEECSCCCHHHHHHHHTHHHHT----T----
T ss_pred             cCHHHHHHHHHHHH--h---C---------------------C---CCEEEEeCCCchHHHHHHHHHHHHc----C----
Confidence            68999999999865  1   1                     1   4689999999999765542211100    0    


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..+.+++ +.           ++      ++++++.|.      +++.+|++|++++..|.+.+    +++|.++|++
T Consensus       123 ~~~~~~~-~~-----------~d------~~~l~~~i~------~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~  172 (421)
T 2ctz_A          123 IEVRFTS-RE-----------ER------PEEFLALTD------EKTRAWWVESIGNPALNIPD----LEALAQAARE  172 (421)
T ss_dssp             CEEEECC-TT-----------CC------HHHHHHHCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             CEEEEEC-CC-----------CC------HHHHHHhhc------cCCeEEEEECCCCCCCcccC----HHHHHHHHHH
Confidence            0011120 10           12      456666653      37899999999999898765    8999999974

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=97.31  E-value=0.00061  Score=56.40  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|+..|++++|.+...+  |..                ++  |.+||... .+|+.+..++...|..        
T Consensus       129 ~~ggt~a~~~al~~~~~~~~~~--Gd~----------------~~--r~~Vlv~~-~~h~~~~~~~~~~G~~--------  179 (474)
T 1wyu_B          129 PAAGAHGELTGILIIRAYHEDR--GEG----------------RT--RRVVLVPD-SAHGSNPATASMAGYQ--------  179 (474)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHT--TCT----------------TT--CCEEEEET-TSCTHHHHHHHHTTCE--------
T ss_pred             ChHHHHHHHHHHHHHHHHHHhc--CCc----------------cC--CCEEEEeC-CcChhhHHHHHHCCCE--------
Confidence            4789999999999999875333  310                12  56777766 8889888776655431        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|... .  +.     -|      +++|++.+.      +++++||++.. ...|++.   ..+++|.++|++
T Consensus       180 ---vv~v~~~~-~--~~-----~d------~~~L~~~i~------~~t~~v~~~~p-n~~G~~~---~~l~~i~~l~~~  231 (474)
T 1wyu_B          180 ---VREIPSGP-E--GE-----VD------LEALKRELG------PHVAALMLTNP-NTLGLFE---RRILEISRLCKE  231 (474)
T ss_dssp             ---EEEECBCT-T--SS-----BC------HHHHHHHCS------TTEEEEEECSS-CTTSCCC---TTHHHHHHHHHH
T ss_pred             ---EEEecCCC-C--CC-----cC------HHHHHHhhC------CCceEEEEECC-CCCcccC---CCHHHHHHHHHH
Confidence               12233211 0  00     12      566666653      36899999973 4567662   358999999874

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=97.30  E-value=0.00021  Score=57.17  Aligned_cols=104  Identities=9%  Similarity=0.056  Sum_probs=60.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcC-CCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTT-HSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s-~~~~~~~~~~   79 (159)
                      ++|||+|+++++++.      .                     +   +.+||++..+|||.+...+... +..       
T Consensus        57 ~~sgt~a~~~~~~~~------~---------------------~---gd~vi~~~~~~~~~~~~~~~~~~g~~-------   99 (379)
T 3ke3_A           57 PGSGTYGMEAVARQL------T---------------------I---DEDCLIIRNGWFSYRWTQILEKGKFA-------   99 (379)
T ss_dssp             ESCHHHHHHHHHHHH------C---------------------T---TCEEEEEECSHHHHHHHHHHHHHCCS-------
T ss_pred             cCChhHHHHHHHHhC------C---------------------C---CCeEEEEeCCchhHHHHHHHHHhCCC-------
Confidence            369999999987542      1                     1   4689999999999876544321 110       


Q ss_pred             CCCCCCcccCCC-----CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHH
Q psy4805          80 PAFDWPIASFPK-----YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQ  154 (159)
Q Consensus        80 ~~~~~~~~p~p~-----~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr  154 (159)
                        ..+..++.+.     +..++.    ..+      ++++++.+...     ++.+|++..+....|+ +.|.+|+++|.
T Consensus       100 --~~~~~~~~~~~g~~~~~~~~~----~~d------~~~l~~~i~~~-----~~~~v~~~~~~~~~G~-~~~~~~l~~i~  161 (379)
T 3ke3_A          100 --KSSTVLTAERTEDTEAPKPFA----PVD------IETAVAKIKED-----KSAIVYAPHVETSSGI-ILSEEYIKALS  161 (379)
T ss_dssp             --SEEEEEECEESSCCSSCCCEE----CCC------HHHHHHHHHHH-----TCSEEEEESEETTTTE-ECCHHHHHHHH
T ss_pred             --CceEEEeccccccccccCCCC----CCC------HHHHHHHHhhc-----CCcEEEEEeecCCCce-eCCHHHHHHHH
Confidence              0111222211     001110    012      56777777542     2344666555555665 45788999999


Q ss_pred             HHhcC
Q psy4805         155 KIGKK  159 (159)
Q Consensus       155 ~lc~~  159 (159)
                      ++|++
T Consensus       162 ~~~~~  166 (379)
T 3ke3_A          162 EAVHS  166 (379)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=97.28  E-value=0.00046  Score=55.08  Aligned_cols=94  Identities=13%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +|||+|++.|++...        +                      +..+|.+...+|+.+..++...+..         
T Consensus       112 ~sGs~a~~~~~~~~~--------~----------------------~gd~v~~~~~~~~~~~~~~~~~g~~---------  152 (401)
T 1fc4_A          112 SSCFDANGGLFETLL--------G----------------------AEDAIISDALNHASIIDGVRLCKAK---------  152 (401)
T ss_dssp             SCHHHHHHTTHHHHC--------C----------------------TTCEEEEETTCCHHHHHHHHTSCSE---------
T ss_pred             CChHHHHHHHHHHHc--------C----------------------CCCEEEEcchhHHHHHHHHHHcCCc---------
Confidence            689999998887641        1                      2245666777888777665544321         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          .+++|.           .+      ++++++.+......+.++++|++++.+...|.+.+    +++|.++|++
T Consensus       153 ----~~~~~~-----------~d------~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~  205 (401)
T 1fc4_A          153 ----RYRYAN-----------ND------MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADK  205 (401)
T ss_dssp             ----EEEECT-----------TC------HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             ----eEEECC-----------CC------HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHH
Confidence                112221           12      34566666543111126889999999998898765    8999999974

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.27  E-value=0.00063  Score=54.34  Aligned_cols=93  Identities=16%  Similarity=0.227  Sum_probs=60.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.|++...        +                      +...|.+...+|+.+..++...|..        
T Consensus       109 ~~ggt~a~~~~~~~~~--------~----------------------~gd~V~~~~p~~~~~~~~~~~~g~~--------  150 (398)
T 3a2b_A          109 FSTGFQSNLGPLSCLM--------G----------------------RNDYILLDERDHASIIDGSRLSFSK--------  150 (398)
T ss_dssp             ESSHHHHHHHHHHHSS--------C----------------------TTCEEEEETTCCHHHHHHHHHSSSE--------
T ss_pred             ECCHHHHHHHHHHHHh--------C----------------------CCCEEEECCccCHHHHHHHHHcCCc--------
Confidence            4689999999888651        1                      2244556667788777766655421        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                           .++.|.           .+      +++|++.+....  .+++.+|++++++...|.+.+    +++|.++|++
T Consensus       151 -----~~~v~~-----------~d------~~~l~~~l~~~~--~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~  201 (398)
T 3a2b_A          151 -----VIKYGH-----------NN------MEDLRAKLSRLP--EDSAKLICTDGIFSMEGDIVN----LPELTSIANE  201 (398)
T ss_dssp             -----EEEECT-----------TC------HHHHHHHHHTSC--SSSCEEEEEESBCTTTCCBCC----HHHHHHHHHH
T ss_pred             -----eEEeCC-----------CC------HHHHHHHHHhhc--cCCceEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence                 112221           12      456777776531  126889999999988888764    8999999874

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=97.27  E-value=0.0001  Score=58.43  Aligned_cols=96  Identities=16%  Similarity=0.097  Sum_probs=61.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhh-hhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGC-LSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga-~s~s~~~~~~~~~~   79 (159)
                      +++|++|++.|++..  .      .                  +   +.+||....+|||..... ....|..       
T Consensus        80 ~~gg~~al~~~~~~~--~------~------------------~---gd~vl~~~~~~~~~~~~~~~~~~g~~-------  123 (393)
T 3kgw_A           80 SGSGHCAMETALFNL--L------E------------------P---GDSFLTGTNGIWGMRAAEIADRIGAR-------  123 (393)
T ss_dssp             SCCTTTHHHHHHHHH--C------C------------------T---TCEEEEEESSHHHHHHHHHHHHTTCE-------
T ss_pred             eCCcHHHHHHHHHhc--C------C------------------C---CCEEEEEeCCchhHHHHHHHHHcCCc-------
Confidence            479999999999865  1      1                  2   467888888988754322 2222211       


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          +..+|.... ..       .|      +++|++.+...     ++.+|++++.++..|++.+    +++|+++|++
T Consensus       124 ----~~~~~~~~~-~~-------~d------~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  176 (393)
T 3kgw_A          124 ----VHQMIKKPG-EH-------YT------LQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP----LDGFGELCHR  176 (393)
T ss_dssp             ----EEEEECCTT-CC-------CC------HHHHHHHHHHH-----CCSEEEEESEETTTTEECC----CTTHHHHHHH
T ss_pred             ----eEEEeCCCC-CC-------CC------HHHHHHHHhhC-----CCcEEEEeccCCcchhhcc----HHHHHHHHHH
Confidence                112232110 00       12      56777777652     5789999999998898765    7889999974

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=97.27  E-value=0.00065  Score=54.51  Aligned_cols=108  Identities=7%  Similarity=0.022  Sum_probs=62.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCC--CCCceEEEEcCCCCccchhhhhcCCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPG--APNLSILSFKGAFHGRTLGCLSTTHSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~   78 (159)
                      +++|++|++.++++++.+.                        +|  .++.+||....+||+....+.......      
T Consensus       105 t~gg~~a~~~~~~~~~~~~------------------------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~------  154 (412)
T 1ajs_A          105 SLGGTGALRIGAEFLARWY------------------------NGTNNKDTPVYVSSPTWENHNGVFTTAGFKD------  154 (412)
T ss_dssp             EEHHHHHHHHHHHHHHHHS------------------------SSSSCCCSCEEEEESCCTHHHHHHHHTTCSC------
T ss_pred             CCCcHHHHHHHHHHHHHhC------------------------cCcCCCCCeEEEcCCCcHHHHHHHHHcCCce------
Confidence            3679999999999876551                        11  001689999999999765544332110      


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                           +..+|... ...+.     .+      ++++++.+...   ..+..++++...+...|. ++|.+++++|.++|+
T Consensus       155 -----~~~~~~~~-~~~~~-----~d------~~~l~~~l~~~---~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~  213 (412)
T 1ajs_A          155 -----IRSYRYWD-TEKRG-----LD------LQGFLSDLENA---PEFSIFVLHACAHNPTGT-DPTPEQWKQIASVMK  213 (412)
T ss_dssp             -----EEEEECEE-TTTTE-----EC------HHHHHHHHHHS---CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHH
T ss_pred             -----eEEEeeec-CCCCc-----cC------HHHHHHHHHhC---CCCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHH
Confidence                 11122200 00000     12      56677777653   224445544433444464 578899999999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       214 ~  214 (412)
T 1ajs_A          214 R  214 (412)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=97.22  E-value=0.00024  Score=55.97  Aligned_cols=78  Identities=14%  Similarity=0.094  Sum_probs=50.4

Q ss_pred             CceEEEEcCCCCccchhhhh-cCCCccccccCCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCC
Q psy4805          48 NLSILSFKGAFHGRTLGCLS-TTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGT  126 (159)
Q Consensus        48 r~~Ii~~~~sYHG~T~ga~s-~s~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  126 (159)
                      +.+||....+|||.+...+. ..|..           +..+|.+. ..    .   .|      ++++++.+..     .
T Consensus        77 gd~vi~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~~-~~----~---~d------~~~l~~~i~~-----~  126 (384)
T 3zrp_A           77 NDKILVVSNGVFGDRWEQIFKRYPVN-----------VKVLRPSP-GD----Y---VK------PGEVEEEVRK-----S  126 (384)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTSSCE-----------EEEECCST-TC----C---CC------HHHHHHHHHH-----S
T ss_pred             CCEEEEecCCcchHHHHHHHHHcCCc-----------EEEecCCC-CC----C---CC------HHHHHHHHHh-----C
Confidence            46899999999997554332 12211           11223221 00    0   12      5677777765     2


Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+|++++++...|.+.+    +++|.++|++
T Consensus       127 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  155 (384)
T 3zrp_A          127 EYKLVALTHVETSTGVREP----VKDVINKIRK  155 (384)
T ss_dssp             CEEEEEEESEETTTTEECC----HHHHHHHHGG
T ss_pred             CCcEEEEeCCCCCCceECc----HHHHHHHHHh
Confidence            5889999999998898765    8899999985

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.22  E-value=0.0003  Score=56.33  Aligned_cols=39  Identities=5%  Similarity=0.014  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      +++++|++|++++..|.+.+    +++|+++|++
T Consensus       127 ~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  165 (386)
T 1cs1_A          127 EQALRAALA------EKPKLVLVESPSNPLLRVVD----IAKICHLARE  165 (386)
T ss_dssp             HHHHHHHHH------TCCSEEEEECSCTTTCCCCC----HHHHHHHHHH
T ss_pred             HHHHHHhhc------cCCcEEEEeCCCCCCCcccC----HHHHHHHHHH
Confidence            566777765      25789999999999998764    8899999874

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=97.22  E-value=0.00046  Score=56.03  Aligned_cols=106  Identities=12%  Similarity=0.026  Sum_probs=63.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++..+.                          +   ...|+....+||+........+|..        
T Consensus       117 ~~gg~~a~~~~~~~l~~--------------------------~---gd~vl~~~p~~~~~~~~~~~~~g~~--------  159 (435)
T 3piu_A          117 TAGATSANETFIFCLAD--------------------------P---GEAVLIPTPYYPGFDRDLKWRTGVE--------  159 (435)
T ss_dssp             EEHHHHHHHHHHHHHCC--------------------------T---TCEEEEEESCCTTHHHHTTTTTCCE--------
T ss_pred             cCChHHHHHHHHHHhcC--------------------------C---CCeEEECCCccccHHHHHHHhcCCE--------
Confidence            36789999999986521                          1   3578999999887765433233321        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.... ..+.     .|      +++|++.+........++.+||+++.+...|.+ +|.+.+++|.++|++
T Consensus       160 ---~~~~~~~~~-~~~~-----~d------~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~  222 (435)
T 3piu_A          160 ---IVPIHCTSS-NGFQ-----IT------ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTT-MTRNELYLLLSFVED  222 (435)
T ss_dssp             ---EEEEECCGG-GTSC-----CC------HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEeeCCCc-cCCc-----CC------HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence               111222100 0000     02      455666665432123478899999878878874 567789999999974

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=97.21  E-value=0.0009  Score=53.22  Aligned_cols=104  Identities=6%  Similarity=-0.117  Sum_probs=62.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.++++++.+.                        +   ..+||....+||+....+......         
T Consensus       100 ~~g~~~a~~~~~~~~~~~~------------------------~---gd~Vl~~~p~y~~~~~~~~~~g~~---------  143 (396)
T 2q7w_A          100 TPGGTGALRVAADFLAKNT------------------------S---VKRVWVSNPSWPNHKSVFNSAGLE---------  143 (396)
T ss_dssp             ESHHHHHHHHHHHHHHHHS------------------------C---CCEEEEEESCCTHHHHHHHHTTCE---------
T ss_pred             cccchhhHHHHHHHHHHhC------------------------C---CCEEEEcCCCchhHHHHHHHcCCc---------
Confidence            3689999999999886551                        1   457999999999987655443211         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.... ..+.     .+      ++++++.+...   .....++++...+...|. ++|.+++++|.++|++
T Consensus       144 ---~~~~~~~~~-~~~~-----~d------~~~l~~~l~~~---~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~  203 (396)
T 2q7w_A          144 ---VREYAYYDA-ENHT-----LD------FDALINSLNEA---QAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVE  203 (396)
T ss_dssp             ---EEEEECEET-TTTE-----EC------HHHHHHHHTTC---CTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHH
T ss_pred             ---eEEEecccC-CCCC-----cC------HHHHHHHHHhC---CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHH
Confidence               011222000 0000     12      56677776542   123455555545555565 5678999999999974

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=97.18  E-value=0.00035  Score=55.85  Aligned_cols=99  Identities=8%  Similarity=-0.008  Sum_probs=62.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhh---cCCCcccccc
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLS---TTHSKYIHKI   77 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s---~s~~~~~~~~   77 (159)
                      +++|++|++.+++.+++.. .   .                  +   ..+||....+||+.......   ..|..     
T Consensus        96 ~~g~t~a~~~~~~~~~~~~-~---~------------------~---gd~Vl~~~~~~~~~~~~~~~~~~~~g~~-----  145 (420)
T 1t3i_A           96 TRNATEAINLVAYSWGMNN-L---K------------------A---GDEIITTVMEHHSNLVPWQMVAAKTGAV-----  145 (420)
T ss_dssp             ESSHHHHHHHHHHHTHHHH-C---C------------------T---TCEEEEETTCCGGGTHHHHHHHHHHCCE-----
T ss_pred             cCChHHHHHHHHHHhhhcc-c---C------------------C---CCEEEECcchhHHHHHHHHHHHHhcCcE-----
Confidence            4689999999999885421 1   1                  1   46899999999997532111   11211     


Q ss_pred             CCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          78 DIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        78 ~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                            +..+|... .  +.     .+      ++++++.+.      .++.+|++++.+...|.+.+    +++|.++|
T Consensus       146 ------~~~v~~~~-~--~~-----~d------~~~l~~~l~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~  195 (420)
T 1t3i_A          146 ------LKFVQLDE-Q--ES-----FD------LEHFKTLLS------EKTKLVTVVHISNTLGCVNP----AEEIAQLA  195 (420)
T ss_dssp             ------EEEECBCT-T--SS-----BC------HHHHHHHCC------TTEEEEEEESBCTTTCBBCC----HHHHHHHH
T ss_pred             ------EEEeccCC-C--CC-----cC------HHHHHHhhC------CCceEEEEeCCcccccCcCC----HHHHHHHH
Confidence                  11222211 0  00     12      456666553      36889999999988898765    89999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      ++
T Consensus       196 ~~  197 (420)
T 1t3i_A          196 HQ  197 (420)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=97.13  E-value=0.0013  Score=53.10  Aligned_cols=48  Identities=10%  Similarity=0.139  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+........++.+|+++..+...|.+ .|++++++|.++|++
T Consensus       172 ~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~  219 (428)
T 1iay_A          172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQ  219 (428)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHH
Confidence            455666665421113468888877656667875 588999999999974

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=97.13  E-value=0.0004  Score=54.98  Aligned_cols=99  Identities=11%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...||....+||+........ |..        
T Consensus        87 ~~g~~~a~~~~~~~l~--------~------------------~---gd~Vl~~~~~~~~~~~~~~~~-g~~--------  128 (375)
T 3op7_A           87 TNGATGANLLVLYSLI--------E------------------P---GDHVISLYPTYQQLYDIPKSL-GAE--------  128 (375)
T ss_dssp             ESHHHHHHHHHHHHHC--------C------------------T---TCEEEEEESSCTHHHHHHHHT-TCE--------
T ss_pred             cCChHHHHHHHHHHhc--------C------------------C---CCEEEEeCCCchhHHHHHHHc-CCE--------
Confidence            3688999999998551        1                  2   467999999999865443222 211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|... ...+  .   .|      +++|++.+.      .++.+|++++.+...|.+ .|++++++|.++|++
T Consensus       129 ---~~~v~~~~-~~~~--~---~d------~~~l~~~l~------~~~~~v~~~~~~nptG~~-~~~~~l~~i~~la~~  185 (375)
T 3op7_A          129 ---VDLWQIEE-ENGW--L---PD------LEKLRQLIR------PTTKMICINNANNPTGAV-MDRTYLEELVEIASE  185 (375)
T ss_dssp             ---EEEEEEEG-GGTT--E---EC------HHHHHHHCC------TTCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHT
T ss_pred             ---EEEEeccc-cCCC--C---CC------HHHHHHhhc------cCCeEEEEcCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence               11122110 0000  0   02      566666653      367889999999888875 578999999999985

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=97.08  E-value=0.0002  Score=56.60  Aligned_cols=95  Identities=13%  Similarity=0.077  Sum_probs=59.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhh-cCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLS-TTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s-~s~~~~~~~~~~   79 (159)
                      ++||++|++.+++...        .                  +   +.+||....+||+.....+. ..+.        
T Consensus        77 ~~ggt~al~~~~~~~~--------~------------------~---gd~vi~~~~~~~~~~~~~~~~~~g~--------  119 (376)
T 3f0h_A           77 TCSSTGSMEAVVMNCF--------T------------------K---KDKVLVIDGGSFGHRFVQLCEIHEI--------  119 (376)
T ss_dssp             SSCHHHHHHHHHHHHC--------C------------------T---TCCEEEEESSHHHHHHHHHHHHTTC--------
T ss_pred             cCChhHHHHHHHHhcc--------C------------------C---CCeEEEEeCChhhHHHHHHHHHcCC--------
Confidence            3678999999998652        1                  2   45799999899986533221 1111        


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         .+..+|.+..   +.     .+      ++++++.+      ..++.+|++++.+...|++.+    +++|.++|++
T Consensus       120 ---~~~~v~~~~~---~~-----~d------~~~l~~~~------~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  172 (376)
T 3f0h_A          120 ---PYVALKLEHG---KK-----LT------KEKLYEYD------NQNFTGLLVNVDETSTAVLYD----TMMIGEFCKK  172 (376)
T ss_dssp             ---CEEEEECCTT---CC-----CC------HHHHHTTT------TSCCCEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             ---ceEEEeCCCC---CC-----CC------HHHHHHhh------ccCceEEEEecccCCcceecC----HHHHHHHHHH
Confidence               1112232210   00     12      45555433      246888999999999998776    9999999974

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=97.08  E-value=0.00021  Score=57.01  Aligned_cols=95  Identities=12%  Similarity=0.002  Sum_probs=61.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhh-hhcCCCccccccCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGC-LSTTHSKYIHKIDIP   80 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga-~s~s~~~~~~~~~~~   80 (159)
                      +||++|++.|++..  .      .                  +   +.+||....+|||..... +...|..        
T Consensus        71 ~sgt~al~~~~~~~--~------~------------------~---gd~Vl~~~~~~~~~~~~~~~~~~g~~--------  113 (411)
T 3nnk_A           71 GTSRAGIEAILVSA--I------R------------------P---GDKVLVPVFGRFGHLLCEIARRCRAE--------  113 (411)
T ss_dssp             SCHHHHHHHHHHHH--C------C------------------T---TCEEEEEECSHHHHHHHHHHHHTTCE--------
T ss_pred             CCcHHHHHHHHHHh--c------C------------------C---CCEEEEecCCchHHHHHHHHHHcCCe--------
Confidence            57899999999876  1      1                  1   568999999999964322 2222211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.+. ...       .|      +++|++.+...     ++.+|++++.+...|++.+    +++|.++|++
T Consensus       114 ---~~~v~~~~-~~~-------~d------~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  166 (411)
T 3nnk_A          114 ---VHTIEVPW-GEV-------FT------PDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP----LAELGEICRR  166 (411)
T ss_dssp             ---EEEEECCT-TCC-------CC------HHHHHHHHHHH-----CCSEEEEESEETTTTEECC----CTTHHHHHHH
T ss_pred             ---EEEEecCC-CCC-------CC------HHHHHHHHhhC-----CCeEEEEeCCCCCcceecc----HHHHHHHHHH
Confidence               12233321 000       12      56777777642     5789999999999998765    7788888874

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=97.08  E-value=0.0016  Score=51.20  Aligned_cols=100  Identities=6%  Similarity=0.002  Sum_probs=63.5

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.|++.+.        .                  +   +..|+....+||+.... +...|..         
T Consensus        76 ~g~t~a~~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~~~-~~~~g~~---------  116 (371)
T 2e7j_A           76 NGAREAKFAVMHSLA--------K------------------K---DAWVVMDENCHYSSYVA-AERAGLN---------  116 (371)
T ss_dssp             SSHHHHHHHHHHHHC--------C------------------T---TCEEEEETTCCHHHHHH-HHHTTCE---------
T ss_pred             CChHHHHHHHHHHHh--------C------------------C---CCEEEEccCcchHHHHH-HHHcCCe---------
Confidence            567899999998762        1                  1   46899999999998765 3333311         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|.+.... .  .   -+      +++|++.+.+... .+++.+|++++.+...|.+.+    +++|.++|++
T Consensus       117 --~~~v~~~~~~~-~--~---~d------~~~l~~~l~~~~~-~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~  175 (371)
T 2e7j_A          117 --IALVPKTDYPD-Y--A---IT------PENFAQTIEETKK-RGEVVLALITYPDGNYGNLPD----VKKIAKVCSE  175 (371)
T ss_dssp             --EEEECCCCTTT-C--C---CC------HHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCC----HHHHHHHHHT
T ss_pred             --EEEeecccCCC-C--C---cC------HHHHHHHHHhhcc-cCCeEEEEEECCCCCCcccCC----HHHHHHHHHH
Confidence              11223111000 0  0   02      5667777765421 147889999999998898765    4889999875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=97.06  E-value=0.0015  Score=51.42  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=64.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhh-cCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNK-QRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~   79 (159)
                      +++|++|++.|++.++..+..+ ..+..                .+ ++..|+....+|++.... +...|..       
T Consensus        92 ~~ggt~a~~~~~~~~~~~~~~~~~~~~~----------------~~-~gd~vl~~~~~~~~~~~~-~~~~g~~-------  146 (397)
T 3f9t_A           92 VSGGTEANLMALRCIKNIWREKRRKGLS----------------KN-EHPKIIVPITAHFSFEKG-REMMDLE-------  146 (397)
T ss_dssp             ESCHHHHHHHHHHHHHHHHHHHHHTTCC----------------CC-SSCEEEEETTCCTHHHHH-HHHHTCE-------
T ss_pred             ecCcHHHHHHHHHHHHHHHHhhhhhccc----------------CC-CCeEEEECCcchhHHHHH-HHHcCce-------
Confidence            4799999999999998764321 01110                11 256888888888875433 3322211       


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          +..+|....   +.     .+      +++|++.+...     ++.+||+++.+...|.+.+    +++|.++|++
T Consensus       147 ----~~~v~~~~~---~~-----~d------~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  199 (397)
T 3f9t_A          147 ----YIYAPIKED---YT-----ID------EKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN----IEELSKIAKE  199 (397)
T ss_dssp             ----EEEECBCTT---SS-----BC------HHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred             ----eEEEeeCCC---Cc-----CC------HHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC----HHHHHHHHHH
Confidence                112232110   00     12      56777777642     5678888888888887754    8889999874

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=97.04  E-value=0.00068  Score=54.63  Aligned_cols=92  Identities=12%  Similarity=0.028  Sum_probs=59.4

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +||++|++.|++...        .                  +   ..+||....+||+.......+.....        
T Consensus        87 ~sG~~a~~~~l~~~~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~~~~~g--------  129 (398)
T 1gc0_A           87 ASGMGAITSTLWTLL--------R------------------P---GDEVLLGNTLYGCTFAFLHHGIGEFG--------  129 (398)
T ss_dssp             SSHHHHHHHHHHHHC--------C------------------T---TCEEEEESSCCSHHHHHHHHTGGGGT--------
T ss_pred             CCHHHHHHHHHHHHh--------c------------------C---CCEEEEeCCCchhHHHHHHHHHHHcC--------
Confidence            689999999998761        1                  1   45799999999986544322211100        


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ..+.+++.             .+      ++++++.+.      +++.+|++|+++...|.+.+    +++|.++|++
T Consensus       130 ~~~~~~~~-------------~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  178 (398)
T 1gc0_A          130 VKLRHVDM-------------AD------LQALEAAMT------PATRVIYFESPANPNMHMAD----IAGVAKIARK  178 (398)
T ss_dssp             CEEEEECT-------------TC------HHHHHHHCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHGG
T ss_pred             CEEEEECC-------------CC------HHHHHHhcC------CCCeEEEEECCCCCCccccc----HHHHHHHHHH
Confidence            00111111             12      455665553      37899999999988888763    8999999975

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=96.97  E-value=0.00023  Score=55.59  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=32.4

Q ss_pred             HHHHHH-HHHHhc-cCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVED-LITKYN-KKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~-~i~~~~-~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++ .+.... ..+.++.+|++++.. +.|. ++|.+++++|.++|++
T Consensus       123 ~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~  171 (356)
T 1v72_A          123 IVRLRERTREKVGDVHTTQPACVSITQAT-EVGS-IYTLDEIEAIGDVCKS  171 (356)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSC-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcchhhccCCceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHH
Confidence            456666 554210 012368999999954 6786 4688999999999974

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=96.97  E-value=0.0023  Score=50.76  Aligned_cols=98  Identities=6%  Similarity=0.001  Sum_probs=61.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ..+|+....+||+....+ ...|..        
T Consensus        97 ~~g~~~a~~~~~~~~~--------~------------------~---gd~vl~~~p~~~~~~~~~-~~~g~~--------  138 (386)
T 1u08_A           97 TAGATEALYAAITALV--------R------------------N---GDEVICFDPSYDSYAPAI-ALSGGI--------  138 (386)
T ss_dssp             ESSHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCTTHHHHH-HHTTCE--------
T ss_pred             cCChHHHHHHHHHHhC--------C------------------C---CCEEEEeCCCchhHHHHH-HHcCCE--------
Confidence            3678899999988651        1                  1   458999999999876533 222211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|....  .+.     .+      +++|++.+.      .++.+|+++..+...|.+ .|.+++++|.++|++
T Consensus       139 ---~~~v~~~~~--~~~-----~d------~~~l~~~l~------~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~  194 (386)
T 1u08_A          139 ---VKRMALQPP--HFR-----VD------WQEFAALLS------ERTRLVILNTPHNPSATV-WQQADFAALWQAIAG  194 (386)
T ss_dssp             ---EEEEECCTT--TCC-----CC------HHHHHHHCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTT
T ss_pred             ---EEEeecCcc--cCc-----CC------HHHHHHhhc------ccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHH
Confidence               111222110  000     12      456666552      367889998778778875 578899999999985

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=96.94  E-value=0.00094  Score=52.68  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhh-hcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCL-STTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~-s~s~~~~~~~~~~   79 (159)
                      +++|++|++.+++...        .                  +   +..|+....+|||.+...+ ...|..       
T Consensus        77 ~~g~t~a~~~~~~~l~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~~~g~~-------  120 (386)
T 2dr1_A           77 PSSGTGIMEASIRNGV--------S------------------K---GGKVLVTIIGAFGKRYKEVVESNGRK-------  120 (386)
T ss_dssp             SSCHHHHHHHHHHHHS--------C------------------T---TCEEEEEESSHHHHHHHHHHHHTTCE-------
T ss_pred             eCChHHHHHHHHHHhh--------c------------------C---CCeEEEEcCCchhHHHHHHHHHhCCc-------
Confidence            4789999999998651        1                  1   4689999999999532221 112211       


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          +..+|... .  .     ..+      +++|++.+++    ..++.+|++++.+...|.+.+    +++|.++|++
T Consensus       121 ----~~~v~~~~-~--~-----~~d------~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  174 (386)
T 2dr1_A          121 ----AVVLEYEP-G--K-----AVK------PEDLDDALRK----NPDVEAVTITYNETSTGVLNP----LPELAKVAKE  174 (386)
T ss_dssp             ----EEEEECCT-T--C-----CCC------HHHHHHHHHH----CTTCCEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             ----eEEEecCC-C--C-----CCC------HHHHHHHHhc----CCCCcEEEEEeecCCcchhCC----HHHHHHHHHH
Confidence                11222211 0  0     012      5667777764    236789999999988888754    7899999874

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=96.94  E-value=0.0018  Score=50.93  Aligned_cols=97  Identities=4%  Similarity=-0.074  Sum_probs=62.1

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++...        .                  +   ...||....+||+....+... |..         
T Consensus        92 ~g~t~a~~~~~~~~~--------~------------------~---gd~Vl~~~~~~~~~~~~~~~~-g~~---------  132 (367)
T 3euc_A           92 NGSDEIISMLALAAA--------R------------------P---GAKVMAPVPGFVMYAMSAQFA-GLE---------  132 (367)
T ss_dssp             EHHHHHHHHHHHHTC--------C------------------T---TCEEEEEESCSCCSCHHHHTT-TCE---------
T ss_pred             CCHHHHHHHHHHHHc--------C------------------C---CCEEEEcCCCHHHHHHHHHHc-CCe---------
Confidence            578889988887541        1                  1   357999999999986554322 211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|...   .+.     .+      +++|++.+...     ++.+|+++..+...|.+. |.+.+++|.++|++
T Consensus       133 --~~~v~~~~---~~~-----~d------~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~  188 (367)
T 3euc_A          133 --FVGVPLRA---DFT-----LD------RGAMLAAMAEH-----QPAIVYLAYPNNPTGNLF-DAADMEAIVRAAQG  188 (367)
T ss_dssp             --EEEEECCT---TSC-----CC------HHHHHHHHHHH-----CCSEEEEESSCTTTCCCC-CHHHHHHHHHHTBT
T ss_pred             --EEEecCCC---CCC-----CC------HHHHHHHhhcc-----CCCEEEEcCCCCCCCCCC-CHHHHHHHHHhhhh
Confidence              11222211   000     12      56777777653     467888887788788755 67889999999985

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=96.94  E-value=0.00083  Score=53.16  Aligned_cols=101  Identities=10%  Similarity=-0.026  Sum_probs=62.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...||....+||+....+......         
T Consensus        91 ~~g~~~a~~~~~~~l~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~g~~---------  132 (391)
T 3dzz_A           91 ASGVVPAISAMVRQFT--------S------------------P---GDQILVQEPVYNMFYSVIEGNGRR---------  132 (391)
T ss_dssp             ESCHHHHHHHHHHHHS--------C------------------T---TCEEEECSSCCHHHHHHHHHTTCE---------
T ss_pred             CCCHHHHHHHHHHHhC--------C------------------C---CCeEEECCCCcHHHHHHHHHcCCE---------
Confidence            3678999999998651        1                  1   458999999999876554432211         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.......+  .   .+      +++|++.+..     .++.+|+++..+...|.+. |+..+++|.++|++
T Consensus       133 ---~~~~~~~~~~~~~--~---~d------~~~l~~~l~~-----~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~  191 (391)
T 3dzz_A          133 ---VISSDLIYENSKY--S---VN------WADLEEKLAT-----PSVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAK  191 (391)
T ss_dssp             ---EEECCCEEETTEE--E---CC------HHHHHHHHTS-----TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHH
T ss_pred             ---EEEeeeeecCCce--e---ec------HHHHHHHHhc-----cCceEEEEECCCCCCCccc-CHHHHHHHHHHHHH
Confidence               0111210000000  0   12      5677777752     3677888887788888754 67789999999974

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=96.91  E-value=0.0016  Score=51.38  Aligned_cols=95  Identities=9%  Similarity=-0.063  Sum_probs=59.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...||....+||+....+......         
T Consensus        87 t~g~~~a~~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~g~~---------  128 (377)
T 3fdb_A           87 IPDVVRGLYIAIDHFT--------P------------------A---QSKVIVPTPAYPPFFHLLSATQRE---------  128 (377)
T ss_dssp             ESCHHHHHHHHHHHHS--------C------------------T---TCCEEEEESCCTHHHHHHHHHTCC---------
T ss_pred             eCChHHHHHHHHHHhc--------C------------------C---CCEEEEcCCCcHhHHHHHHHcCCE---------
Confidence            3689999999998651        1                  1   357999999999976544332211         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|....          .+      +++|++.+..     ...+.+|..| +...|.+ .|.+.+++|.++|++
T Consensus       129 ---~~~~~~~~~----------~d------~~~l~~~l~~-----~~~~v~i~~p-~nptG~~-~~~~~l~~l~~~~~~  181 (377)
T 3fdb_A          129 ---GIFIDATGG----------IN------LHDVEKGFQA-----GARSILLCNP-YNPLGMV-FAPEWLNELCDLAHR  181 (377)
T ss_dssp             ---EEEEECTTS----------CC------HHHHHHHHHT-----TCCEEEEESS-BTTTTBC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEccCCCC----------CC------HHHHHHHhcc-----CCCEEEEeCC-CCCCCCC-CCHHHHHHHHHHHHH
Confidence               111222110          02      5677777764     2335555556 7777875 467789999999974

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=96.90  E-value=0.0015  Score=52.07  Aligned_cols=101  Identities=10%  Similarity=-0.010  Sum_probs=62.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ..+||....+||+....+... |..        
T Consensus        95 t~g~~~a~~~~~~~l~--------~------------------~---gd~vl~~~p~~~~~~~~~~~~-g~~--------  136 (399)
T 1c7n_A           95 TAGVVPAVFNAVREFT--------K------------------P---GDGVIIITPVYYPFFMAIKNQ-ERK--------  136 (399)
T ss_dssp             ESSHHHHHHHHHHHHC--------C------------------T---TCEEEECSSCCTHHHHHHHTT-TCE--------
T ss_pred             cCCHHHHHHHHHHHhc--------C------------------C---CCEEEEcCCCcHhHHHHHHHc-CCE--------
Confidence            3678999999998541        1                  1   457999999999987654332 211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.......+     ..+      +++|++.+..     .++.+|++...+...|.+ +|++++++|.++|++
T Consensus       137 ---~~~~~~~~~~g~~-----~~d------~~~l~~~l~~-----~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~  195 (399)
T 1c7n_A          137 ---IIECELLEKDGYY-----TID------FQKLEKLSKD-----KNNKALLFCSPHNPVGRV-WKKDELQKIKDIVLK  195 (399)
T ss_dssp             ---EEECCCEEETTEE-----ECC------HHHHHHHHTC-----TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHH
T ss_pred             ---EEecccccCCCCE-----EEc------HHHHHHHhcc-----CCCcEEEEcCCCCCCCcC-cCHHHHHHHHHHHHH
Confidence               0111210000000     012      5667777652     357788876667767875 578999999999974

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=96.89  E-value=0.00044  Score=54.94  Aligned_cols=100  Identities=8%  Similarity=0.041  Sum_probs=62.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...     .                     +   +.+|+....+||+.... +...|..        
T Consensus        84 ~~g~~~a~~~~~~~~~-----~---------------------~---gd~Vl~~~~~~~~~~~~-~~~~g~~--------  125 (381)
T 1v2d_A           84 TSGATEALYVLLQSLV-----G---------------------P---GDEVVVLEPFFDVYLPD-AFLAGAK--------  125 (381)
T ss_dssp             ESSHHHHHHHHHHHHC-----C---------------------T---TCEEEEEESCCTTHHHH-HHHTTCE--------
T ss_pred             cCChHHHHHHHHHHhC-----C---------------------C---CCEEEEcCCCchhHHHH-HHHcCCE--------
Confidence            4689999999998762     1                     1   46899999999997643 2222211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|...+  +....   .+      +++|++.+.      .++.+|+++..+...|.+ .|.+++++|.++|++
T Consensus       126 ---~~~v~~~~~--~~~~~---~d------~~~l~~~l~------~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~  183 (381)
T 1v2d_A          126 ---ARLVRLDLT--PEGFR---LD------LSALEKALT------PRTRALLLNTPMNPTGLV-FGERELEAIARLARA  183 (381)
T ss_dssp             ---EEEEECEEE--TTEEE---CC------HHHHHTTCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEEeCCCC--CccCC---cC------HHHHHHhcC------cCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHH
Confidence               111222100  00000   12      455555442      368899999888878876 567999999999974

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=96.88  E-value=0.005  Score=49.09  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+++++++....  .+++.+|++++++...|.+.+    +++|.++|++
T Consensus       164 ~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  206 (401)
T 2bwn_A          164 VAHLRELIAADD--PAAPKLIAFESVYSMDGDFGP----IKEICDIAEE  206 (401)
T ss_dssp             HHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCC----HHHHHHHHHH
Confidence            456677776531  146889999999999898765    7899999974

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=96.86  E-value=0.00056  Score=55.91  Aligned_cols=39  Identities=10%  Similarity=0.187  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|++|+.++..|.+.+    +++|.++|++
T Consensus       156 ~~~l~~ai~------~~t~~v~le~p~NptG~~~~----l~~i~~la~~  194 (414)
T 3ndn_A          156 LSQWERALS------VPTQAVFFETPSNPMQSLVD----IAAVTELAHA  194 (414)
T ss_dssp             HHHHHHHTS------SCCSEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             HHHHHHhcC------CCCeEEEEECCCCCCCcccc----HHHHHHHHHH
Confidence            456666653      36789999999999998754    8889999874

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=96.84  E-value=0.00078  Score=54.12  Aligned_cols=89  Identities=8%  Similarity=0.005  Sum_probs=58.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhh---hcCCCccccccC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCL---STTHSKYIHKID   78 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~---s~s~~~~~~~~~   78 (159)
                      +||++|++.|++...     +                     +   ..+||....+||+......   ...|..      
T Consensus        86 ~sG~~a~~~~l~~~~-----~---------------------~---gd~vi~~~~~~~~~~~~~~~~~~~~g~~------  130 (398)
T 2rfv_A           86 ASGISAITTTLLTLC-----Q---------------------Q---GDHIVSASAIYGCTHAFLSHSMPKFGIN------  130 (398)
T ss_dssp             SSHHHHHHHHHHHHC-----C---------------------T---TCEEEEESSSCHHHHHHHHTHHHHTTCE------
T ss_pred             CCHHHHHHHHHHHHh-----C---------------------C---CCEEEEcCCCcccHHHHHHHHHHHcCCE------
Confidence            689999999998761     1                     1   4579999999988654331   111110      


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                           +..+|.             ++      ++++++.+.      +++.+|++|+.+...|.+.+    +++|.++|+
T Consensus       131 -----~~~v~~-------------~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~  176 (398)
T 2rfv_A          131 -----VRFVDA-------------AK------PEEIRAAMR------PETKVVYIETPANPTLSLVD----IETVAGIAH  176 (398)
T ss_dssp             -----EEEECT-------------TS------HHHHHHHCC------TTEEEEEEESSBTTTTBCCC----HHHHHHHHH
T ss_pred             -----EEEeCC-------------CC------HHHHHHhcC------CCCeEEEEECCCCCCCcccC----HHHHHHHHH
Confidence                 111111             12      455655543      36899999999998898774    899999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       177 ~  177 (398)
T 2rfv_A          177 Q  177 (398)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=96.80  E-value=0.00041  Score=55.85  Aligned_cols=39  Identities=5%  Similarity=0.049  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      +++.+|++|+.++..|.+.+    +++|.++|++
T Consensus       134 ~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~  172 (389)
T 3acz_A          134 VEKVKAAWK------PNTKMVYLESPANPTCKVSD----IKGIAVVCHE  172 (389)
T ss_dssp             HHHHHHTCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             HHHHHHhcC------CCCeEEEEECCCCCCCeecC----HHHHHHHHHH
Confidence            455555543      36889999999998888764    7899998874

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=96.74  E-value=0.0018  Score=51.38  Aligned_cols=98  Identities=9%  Similarity=-0.033  Sum_probs=61.2

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++...        .                  +   ..+|+....+||+....+ ...|..         
T Consensus        97 ~g~~~a~~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~~~~-~~~g~~---------  137 (388)
T 1j32_A           97 NGGKQSIFNLMLAMI--------E------------------P---GDEVIIPAPFWVSYPEMV-KLAEGT---------  137 (388)
T ss_dssp             SHHHHHHHHHHHHHC--------C------------------T---TCEEEEESSCCTHHHHHH-HHTTCE---------
T ss_pred             CCHHHHHHHHHHHhc--------C------------------C---CCEEEEcCCCChhHHHHH-HHcCCE---------
Confidence            567999999988662        1                  2   357999999999876433 222211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|.... ..+.     .+      +++|++.+.      .++.+|++++.+...|.+ .|++++++|.++|++
T Consensus       138 --~~~v~~~~~-~~~~-----~d------~~~l~~~l~------~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~  194 (388)
T 1j32_A          138 --PVILPTTVE-TQFK-----VS------PEQIRQAIT------PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVE  194 (388)
T ss_dssp             --EEEECCCGG-GTTC-----CC------HHHHHHHCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             --EEEecCCcc-cCCC-----CC------HHHHHHhcC------cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHH
Confidence              111222100 0000     12      456666553      367888988888778876 468999999999974

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=96.73  E-value=0.0013  Score=52.94  Aligned_cols=99  Identities=7%  Similarity=0.045  Sum_probs=61.5

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++...        .                  +   ...||....+||+....+ ...|..         
T Consensus        93 ~g~~~al~~~~~~~~--------~------------------~---gd~Vl~~~~~y~~~~~~~-~~~g~~---------  133 (411)
T 2o0r_A           93 VGATEAIAAAVLGLV--------E------------------P---GSEVLLIEPFYDSYSPVV-AMAGAH---------  133 (411)
T ss_dssp             EHHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCTTHHHHH-HHTTCE---------
T ss_pred             CCHHHHHHHHHHHhc--------C------------------C---CCEEEEeCCCcHhHHHHH-HHcCCE---------
Confidence            568899999887651        1                  2   357999999999975433 222211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|.......+  .   .+      +++|++.+.      .++.+|+++..+...|.+ +|.+++++|.++|++
T Consensus       134 --~~~v~~~~~~~~~--~---~d------~~~l~~~l~------~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~  191 (411)
T 2o0r_A          134 --RVTVPLVPDGRGF--A---LD------ADALRRAVT------PRTRALIINSPHNPTGAV-LSATELAAIAEIAVA  191 (411)
T ss_dssp             --EEEEECEEETTEE--E---CC------HHHHHHHCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             --EEEeeccccccCC--C---CC------HHHHHHhhc------cCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence              1112221000000  0   12      556666553      367889999888888875 578999999999974

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=96.73  E-value=0.0013  Score=51.66  Aligned_cols=99  Identities=17%  Similarity=0.112  Sum_probs=61.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhh--hcCCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCL--STTHSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~--s~s~~~~~~~~~   78 (159)
                      +++|++|++.+++.++.+. .+                     +   ...||....+||+......  ...|..      
T Consensus        67 ~~g~t~a~~~~~~~~~~~~-~~---------------------~---gd~vl~~~~~~~~~~~~~~~~~~~g~~------  115 (384)
T 1eg5_A           67 TSCATESINWILKTVAETF-EK---------------------R---KRTIITTPIEHKAVLETMKYLSMKGFK------  115 (384)
T ss_dssp             ESCHHHHHHHHHHHHHHHT-TT---------------------T---CCEEEECTTSCHHHHHHHHHHHHTTCE------
T ss_pred             ECCHHHHHHHHHHhhhhhc-cC---------------------C---CCEEEECCCCchHHHHHHHHHHhcCCE------
Confidence            3689999999999886431 00                     1   4579999999998754432  222211      


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                           +..+|... .  .     ..+      +++|++.+.      .++.+|++++.+...|.+.+    +++|.++|+
T Consensus       116 -----~~~v~~~~-~--~-----~~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----~~~i~~l~~  166 (384)
T 1eg5_A          116 -----VKYVPVDS-R--G-----VVK------LEELEKLVD------EDTFLVSIMAANNEVGTIQP----VEDVTRIVK  166 (384)
T ss_dssp             -----EEECCBCT-T--S-----CBC------HHHHHHHCC------TTEEEEEEESBCTTTCBBCC----HHHHHHHHH
T ss_pred             -----EEEEccCC-C--C-----ccC------HHHHHHHhC------CCCeEEEEECCCCCcccccC----HHHHHHHHH
Confidence                 11122211 0  0     012      456666553      36889999999888888765    688888886


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       167 ~  167 (384)
T 1eg5_A          167 K  167 (384)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=96.71  E-value=0.0011  Score=52.75  Aligned_cols=101  Identities=6%  Similarity=-0.042  Sum_probs=60.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ..+||....+|||....+... |..        
T Consensus        93 t~g~~~al~~~~~~l~--------~------------------~---gd~vl~~~p~y~~~~~~~~~~-g~~--------  134 (390)
T 1d2f_A           93 GPSVIYMVSELIRQWS--------E------------------T---GEGVVIHTPAYDAFYKAIEGN-QRT--------  134 (390)
T ss_dssp             ESCHHHHHHHHHHHSS--------C------------------T---TCEEEEEESCCHHHHHHHHHT-TCE--------
T ss_pred             cCCHHHHHHHHHHHhc--------C------------------C---CCEEEEcCCCcHHHHHHHHHC-CCE--------
Confidence            3678899999988541        1                  1   458999999999987654332 211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.......+.     .+      +++|++.+..     .++.+|++...+...|.+ .|.+++++|.++|++
T Consensus       135 ---~~~v~~~~~~~~~~-----~d------~~~l~~~l~~-----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~  193 (390)
T 1d2f_A          135 ---VMPVALEKQADGWF-----CD------MGKLEAVLAK-----PECKIMLLCSPQNPTGKV-WTCDELEIMADLCER  193 (390)
T ss_dssp             ---EEEEECEECSSSEE-----CC------HHHHHHHHTS-----TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHH
T ss_pred             ---EEEeecccCCCccc-----cC------HHHHHHHhcc-----CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHH
Confidence               11122210000000     12      5667776642     257777765446667876 466899999999974

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=96.68  E-value=0.0011  Score=53.14  Aligned_cols=42  Identities=12%  Similarity=0.129  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      .++.+|+++..+...|.+. |++.+++|.++|++
T Consensus       164 ~~~l~~~~~------~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~  205 (422)
T 3fvs_A          164 PMELAGKFT------SRTKALVLNTPNNPLGKVF-SREELELVASLCQQ  205 (422)
T ss_dssp             HHHHHTTCC------TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHhhcC------CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHH
Confidence            455555442      3688899998888888765 88999999999974

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=96.60  E-value=0.0013  Score=52.15  Aligned_cols=42  Identities=7%  Similarity=0.154  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|+++..+...|.+ .|++++++|.++|++
T Consensus       150 ~~~l~~~l~------~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~  191 (389)
T 1gd9_A          150 VDELKKYVT------DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVE  191 (389)
T ss_dssp             HHHHHHHCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC------cCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHH
Confidence            456666553      257888888777777875 578899999999974

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=96.60  E-value=0.002  Score=51.45  Aligned_cols=101  Identities=16%  Similarity=0.077  Sum_probs=60.7

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++.++.                          +   ..+||....+||+..... ...|..         
T Consensus       105 ~g~t~a~~~~~~~~~~--------------------------~---gd~vl~~~p~~~~~~~~~-~~~g~~---------  145 (407)
T 2zc0_A          105 IGGTGALDLLGRVLID--------------------------P---GDVVITENPSYINTLLAF-EQLGAK---------  145 (407)
T ss_dssp             SHHHHHHHHHHHHHCC--------------------------T---TCEEEEEESCCHHHHHHH-HTTTCE---------
T ss_pred             cCHHHHHHHHHHHhcC--------------------------C---CCEEEEeCCChHHHHHHH-HHcCCE---------
Confidence            5679999999987621                          1   357999999999975433 322211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEc-ccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVE-PIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~E-PiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|...    .  .   .+      +++|++.+........++.+|++. ..+...|++ .|.+++++|.++|++
T Consensus       146 --~~~v~~~~----~--~---~d------~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~i~~~~~~  206 (407)
T 2zc0_A          146 --IEGVPVDN----D--G---MR------VDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT-MSMERRKALLEIASK  206 (407)
T ss_dssp             --EEEEEEET----T--E---EC------HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             --EEEcccCC----C--C---CC------HHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC-CCHHHHHHHHHHHHH
Confidence              11122210    0  0   12      456666665210002367787544 467778875 578999999999974

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=96.60  E-value=0.0018  Score=51.20  Aligned_cols=99  Identities=10%  Similarity=-0.042  Sum_probs=60.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...||....+||+....+......         
T Consensus        96 ~~g~~~a~~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~g~~---------  137 (391)
T 4dq6_A           96 SPGVIPAISLLINELT--------K------------------A---NDKIMIQEPVYSPFNSVVKNNNRE---------  137 (391)
T ss_dssp             ESCHHHHHHHHHHHHS--------C------------------T---TCEEEECSSCCTHHHHHHHHTTCE---------
T ss_pred             cCChHHHHHHHHHHhC--------C------------------C---CCEEEEcCCCCHHHHHHHHHcCCe---------
Confidence            4689999999998651        1                  1   357999999999976654432211         


Q ss_pred             CCCCCcccCC-CCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFP-KYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p-~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.. .....+  .   .+      +++|++.+.      . +.+|+++..+...|++ .|+..+++|.++|++
T Consensus       138 ---~~~~~~~~~~~~~~--~---~d------~~~l~~~l~------~-~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~  195 (391)
T 4dq6_A          138 ---LIISPLQKLENGNY--I---MD------YEDIENKIK------D-VKLFILCNPHNPVGRV-WTKDELKKLGDICLK  195 (391)
T ss_dssp             ---EEECCCEECTTSCE--E---CC------HHHHHHHCT------T-EEEEEEESSBTTTTBC-CCHHHHHHHHHHHHH
T ss_pred             ---EEeeeeeecCCCce--E---ee------HHHHHHHhh------c-CCEEEEECCCCCCCcC-cCHHHHHHHHHHHHH
Confidence               0111211 000000  0   12      456666553      2 6677777778778875 567789999999974

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.0013  Score=53.77  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|+++..+...|.+ .+++++++|.++|++
T Consensus       191 ~~~l~~~l~------~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~  232 (447)
T 3b46_A          191 FEQFEKAIT------SKTKAVIINTPHNPIGKV-FTREELTTLGNICVK  232 (447)
T ss_dssp             HHHHHTTCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhc------cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHH
Confidence            455655542      368889998888888876 568999999999974

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=96.58  E-value=0.0014  Score=51.37  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=27.1

Q ss_pred             CCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++.+|++|+.+...|-.++|.+++++|.++|++
T Consensus       136 ~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~  169 (359)
T 3pj0_A          136 EPVSSVLIELPQREIGGQLPAFEELEKISEYCHE  169 (359)
T ss_dssp             SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecccCCCcccCCHHHHHHHHHHHHH
Confidence            4688999998876543356788999999999974

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=96.56  E-value=0.0029  Score=50.82  Aligned_cols=98  Identities=11%  Similarity=0.022  Sum_probs=59.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ..+||....+||+....+... |..        
T Consensus       115 t~G~~~al~~~~~~l~--------~------------------~---gd~Vl~~~p~y~~~~~~~~~~-g~~--------  156 (404)
T 2o1b_A          115 LYGTKNGLVAVPTCVI--------N------------------P---GDYVLLPDPGYTDYLAGVLLA-DGK--------  156 (404)
T ss_dssp             ESSHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCSSHHHHHHHT-TCE--------
T ss_pred             cCCcHHHHHHHHHHhc--------C------------------C---CCEEEEcCCCchhHHHHHHHC-CCE--------
Confidence            3677899999988641        1                  1   357999999999987654432 211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|....  .+.     .|      +++|++.+..      ++.+|+++..+...|.+ .|.+++++|.++|++
T Consensus       157 ---~~~v~~~~~--~~~-----~d------~~~l~~~l~~------~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~  212 (404)
T 2o1b_A          157 ---PVPLNLEPP--HYL-----PD------WSKVDSQIID------KTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKG  212 (404)
T ss_dssp             ---EEEEECCTT--TCC-----CC------GGGSCHHHHH------HEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTT
T ss_pred             ---EEEeccCcc--cCc-----CC------HHHHHHhhcc------CceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHH
Confidence               111222110  000     01      2344445532      46788887556657765 578999999999985

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=96.54  E-value=0.005  Score=49.64  Aligned_cols=104  Identities=6%  Similarity=-0.021  Sum_probs=66.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.++++....      .                  +   ...|+....+|++...........         
T Consensus       123 t~G~t~al~~~~~~~~~~------~------------------~---gd~Vlv~~p~~~~~~~~~~~~g~~---------  166 (420)
T 4f4e_A          123 ALGGTGALKIGADFLRTL------N------------------P---KAKVAISDPSWENHRALFDMAGFE---------  166 (420)
T ss_dssp             EEHHHHHHHHHHHHHHHH------C------------------T---TCCEEEEESCCHHHHHHHHHTTCC---------
T ss_pred             CCccHHHHHHHHHHHHHh------C------------------C---CCEEEEeCCCcHhHHHHHHHcCCe---------
Confidence            357999999999876544      1                  2   457999999999875544332211         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|..+. ..+  .   .+      ++.+++.+...   ..+..++++...+...|++ ++.+.+++|.++|++
T Consensus       167 ---~~~v~~~~~-~~~--~---~d------~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~-~~~~~l~~i~~~~~~  226 (420)
T 4f4e_A          167 ---VVAYPYYDA-KTN--G---VN------FDGMLAALNGY---EPGTIVVLHACCHNPTGVD-LNDAQWAQVVEVVKA  226 (420)
T ss_dssp             ---EEEEECEET-TTT--E---EC------HHHHHHHHTTC---CTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEeeeecc-ccC--c---cC------HHHHHHHHHhC---CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence               111222000 000  0   12      56777777643   3467888888888888875 578889999999974

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=96.52  E-value=0.0073  Score=47.41  Aligned_cols=101  Identities=9%  Similarity=-0.021  Sum_probs=61.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++..+.++..                      +   ...||....+|++.......+....        
T Consensus        66 ~~g~t~a~~~~~~~l~~~~~~----------------------~---gd~Vl~~~~~~~~~~~~~~~~~~~g--------  112 (382)
T 4eb5_A           66 TSGATEANNLAIIGYAMRNAR----------------------K---GKHILVSAVEHMSVINPAKFLQKQG--------  112 (382)
T ss_dssp             ESSHHHHHHHHHHHHHHHHGG----------------------G---CCEEEEETTCCHHHHHHHHHHTTTT--------
T ss_pred             cCchHHHHHHHHHHHHhhccC----------------------C---CCEEEECCCcchHHHHHHHHHHhCC--------
Confidence            368999999999988654311                      1   3579999999987654433221100        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                       ..+..+|... .  .  .   .|      +++|++.+.      .++.+|+++..+...|.+.+    +++|.++|++
T Consensus       113 -~~~~~v~~~~-~--~--~---~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  166 (382)
T 4eb5_A          113 -FEVEYIPVGK-Y--G--E---VD------VSFIDQKLR------DDTILVSVQHANNEIGTIQP----VEEISEVLAG  166 (382)
T ss_dssp             -CEEEEECBCT-T--S--C---BC------HHHHHHHCC------TTEEEEECCSBCTTTCBBCC----HHHHHHHHTT
T ss_pred             -cEEEEeccCC-C--C--c---cC------HHHHHHHhc------CCCeEEEEeccCCCccccCC----HHHHHHHHHH
Confidence             0111222211 0  0  0   12      455666553      25788999999988888765    6899999975

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=96.50  E-value=0.002  Score=50.95  Aligned_cols=96  Identities=8%  Similarity=0.016  Sum_probs=58.2

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++...        .                  +   ..+|+....+||+....+... |..         
T Consensus        94 ~g~~~a~~~~~~~l~--------~------------------~---gd~vl~~~p~y~~~~~~~~~~-g~~---------  134 (376)
T 2dou_A           94 IGSQEGLAHLLLALT--------E------------------P---EDLLLLPEVAYPSYFGAARVA-SLR---------  134 (376)
T ss_dssp             SSHHHHHHHHHHHHC--------C------------------T---TCEEEEESSCCHHHHHHHHHT-TCE---------
T ss_pred             CCcHHHHHHHHHHhc--------C------------------C---CCEEEECCCCcHhHHHHHHHc-CCE---------
Confidence            577899998887541        1                  1   357999999999987655432 211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|.+.   .+.     .|      ++++++.+..      ++.+|+++..+...|.+ .|.+++++|.++|++
T Consensus       135 --~~~~~~~~---~~~-----~d------~~~l~~~l~~------~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~  189 (376)
T 2dou_A          135 --TFLIPLRE---DGL-----AD------LKAVPEGVWR------EAKVLLLNYPNNPTGAV-ADWGYFEEALGLARK  189 (376)
T ss_dssp             --EEEECBCT---TSS-----BC------GGGSCHHHHH------HEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             --EEEeeCCC---CCC-----CC------HHHHHHhhcc------CceEEEECCCCCCcCcc-CCHHHHHHHHHHHHH
Confidence              11122211   000     01      2344445532      46777777446667865 578999999999974

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=96.49  E-value=0.0023  Score=51.13  Aligned_cols=37  Identities=16%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEc-ccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVE-PIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~E-PiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.+.     ++.+|+++ |..|       ....+++|+++|++
T Consensus       161 ~~~l~~~i~~~-----~~~~v~~~~~~~~-------~~~~l~~i~~l~~~  198 (425)
T 3ecd_A          161 YDQVEALAQQH-----KPSLIIAGFSAYP-------RKLDFARFRAIADS  198 (425)
T ss_dssp             HHHHHHHHHHH-----CCSEEEEECSCCC-------SCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhc-----CCcEEEEccccCC-------CcCCHHHHHHHHHH
Confidence            56777777643     46788888 5553       23457899999974

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=95.50  E-value=0.00043  Score=55.34  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.+..     .++.+++++..+...|.+ +|++++++|.++|++
T Consensus       153 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~  195 (392)
T 3b1d_A          153 FEQLENDIVE-----NDVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQK  195 (392)
Confidence            4566666642     246678887677777875 567899999999975

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=96.48  E-value=0.0015  Score=51.89  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=60.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhh-hcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCL-STTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~-s~s~~~~~~~~~~   79 (159)
                      +++|++|++.+++.+.     +                     +   +.+||....+||+.++..+ ...|..       
T Consensus        91 t~g~t~al~~~~~~~~-----~---------------------~---gd~Vl~~~~~~~~~~~~~~~~~~g~~-------  134 (393)
T 1vjo_A           91 SGTGTAAMEATIANAV-----E---------------------P---GDVVLIGVAGYFGNRLVDMAGRYGAD-------  134 (393)
T ss_dssp             SSCHHHHHHHHHHHHC-----C---------------------T---TCEEEEEESSHHHHHHHHHHHHTTCE-------
T ss_pred             eCchHHHHHHHHHhcc-----C---------------------C---CCEEEEEcCChhHHHHHHHHHHcCCc-------
Confidence            4789999999998762     1                     1   4589999999999533221 111211       


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          +..+|.+..   .     ..+      +++|++.+...     ++.+|++++.+...|.+.+    +++|.++|++
T Consensus       135 ----~~~v~~~~~---~-----~~d------~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  187 (393)
T 1vjo_A          135 ----VRTISKPWG---E-----VFS------LEELRTALETH-----RPAILALVHAETSTGARQP----LEGVGELCRE  187 (393)
T ss_dssp             ----EEEEECCTT---C-----CCC------HHHHHHHHHHH-----CCSEEEEESEETTTTEECC----CTTHHHHHHH
T ss_pred             ----eEEEecCCC---C-----CCC------HHHHHHHHhhC-----CceEEEEeccCCCcceecc----HHHHHHHHHH
Confidence                112232210   0     012      56677777642     4668999999988898765    6788888863

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=96.46  E-value=0.0059  Score=48.21  Aligned_cols=79  Identities=13%  Similarity=0.101  Sum_probs=49.1

Q ss_pred             CceEEEEcCCCCccchhhhhcCCCccccccCCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCC
Q psy4805          48 NLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTP  127 (159)
Q Consensus        48 r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~  127 (159)
                      ..+|+....+||+....+... |..           +..+|...   .+.     .+      ++++++.+...     +
T Consensus       116 gd~Vl~~~~~y~~~~~~~~~~-g~~-----------~~~v~~~~---~~~-----~d------~~~l~~~i~~~-----~  164 (369)
T 3cq5_A          116 GRTALGFQPSYSMHPILAKGT-HTE-----------FIAVSRGA---DFR-----ID------MDVALEEIRAK-----Q  164 (369)
T ss_dssp             TCEEEEEESSCTHHHHHHHHT-TCE-----------EEEEECCT---TSS-----CC------HHHHHHHHHHH-----C
T ss_pred             CCEEEEcCCChHHHHHHHHHc-CCE-----------EEEecCCc---CCC-----CC------HHHHHHHhhcc-----C
Confidence            458999999999887644332 211           11122211   000     12      56677776542     4


Q ss_pred             eEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805         128 VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus       128 vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      +.+|+++..+...|.+. |.+.+++|.+.|+
T Consensus       165 ~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~  194 (369)
T 3cq5_A          165 PDIVFVTTPNNPTGDVT-SLDDVERIINVAP  194 (369)
T ss_dssp             CSEEEEESSCTTTCCCC-CHHHHHHHHHHCS
T ss_pred             CCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC
Confidence            67888988888888765 6888888888764

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=96.46  E-value=0.0012  Score=53.03  Aligned_cols=98  Identities=11%  Similarity=-0.009  Sum_probs=61.5

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++...        .                  +   ...|+....+||+....+.. .|..         
T Consensus       108 ~g~~~al~~~~~~l~--------~------------------~---gd~Vl~~~~~~~~~~~~~~~-~g~~---------  148 (406)
T 1xi9_A          108 AAVTEALQLIFGALL--------D------------------P---GDEILVPGPSYPPYTGLVKF-YGGK---------  148 (406)
T ss_dssp             SHHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCHHHHHHHHH-TTCE---------
T ss_pred             CChHHHHHHHHHHhC--------C------------------C---CCEEEEcCCCCccHHHHHHH-cCCE---------
Confidence            678999999988651        1                  1   45899999999987654432 2211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|.... ..+.     .+      +++|++.+.      .++.+|+++..+...|++ +|++++++|.++|++
T Consensus       149 --~~~v~~~~~-~~~~-----~d------~~~l~~~l~------~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~  205 (406)
T 1xi9_A          149 --PVEYRTIEE-EDWQ-----PD------IDDIRKKIT------DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGE  205 (406)
T ss_dssp             --EEEEEEEGG-GTSE-----EC------HHHHHHHCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             --EEEeecCCC-cCCc-----CC------HHHHHHhhC------cCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHH
Confidence              111221100 0000     02      556666653      257888898888888875 578999999999974

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=96.38  E-value=0.0018  Score=52.35  Aligned_cols=39  Identities=10%  Similarity=0.197  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|++|+++...|.+.+    +++|.++|++
T Consensus       130 ~~~l~~~i~------~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~  168 (412)
T 2cb1_A          130 PEAVREALS------AKTRAVFVETVANPALLVPD----LEALATLAEE  168 (412)
T ss_dssp             HHHHHHHCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHhc------cCCeEEEEeCCCCCCccccc----HHHHHHHHHH
Confidence            345555553      36889999999998888764    8999999974

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=96.38  E-value=0.0087  Score=47.43  Aligned_cols=104  Identities=7%  Similarity=-0.019  Sum_probs=64.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.++++....      .                  +   ...|+....+|++........ |..        
T Consensus       101 t~g~~~a~~~~~~~~~~~------~------------------~---gd~vl~~~p~~~~~~~~~~~~-g~~--------  144 (397)
T 3fsl_A          101 TLGGSGALKVGADFLKRY------F------------------P---ESGVWVSDPTWENHVAIFAGA-GFE--------  144 (397)
T ss_dssp             ESHHHHHHHHHHHHHHHH------C------------------T---TCCEEEESSCCHHHHHHHHHT-TCC--------
T ss_pred             cCCcHHHHHHHHHHHHhc------C------------------C---CCeEEEeCCCchhHHHHHHHc-CCc--------
Confidence            367899999999876544      1                  1   457999999999875443332 211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.... ..+  .   .+      ++++++.+.+.   ..+..++++...+...|++ .+.+.+++|.++|++
T Consensus       145 ---~~~~~~~~~-~~~--~---~d------~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~  204 (397)
T 3fsl_A          145 ---VSTYPWYDE-ATN--G---VR------FNDLLATLKTL---QAGSIVLLHPCCHNPTGAD-LTNDQWDAVIEILKA  204 (397)
T ss_dssp             ---EEEECCEET-TTT--E---EC------HHHHHHHHTTC---CTTCEEEECSSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---eEEEeeeec-cCC--c---Cc------HHHHHHHHHhC---CCCCEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHh
Confidence               111222000 000  0   12      56777777643   2456777777777777864 577889999999974

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=96.36  E-value=0.0022  Score=51.10  Aligned_cols=95  Identities=9%  Similarity=-0.025  Sum_probs=60.0

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchh-hhhcCCCccccccCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLG-CLSTTHSKYIHKIDIP   80 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~g-a~s~s~~~~~~~~~~~   80 (159)
                      +||++|++.+++..  +      .                  +   +..||....+||+.... .+...|..        
T Consensus        69 ~s~t~al~~~~~~l--~------~------------------~---gd~Vl~~~~~~~~~~~~~~~~~~g~~--------  111 (416)
T 3isl_A           69 GTSRAGIEAVLASV--I------E------------------P---EDDVLIPIYGRFGYLLTEIAERYGAN--------  111 (416)
T ss_dssp             SCHHHHHHHHHHHH--C------C------------------T---TCEEEEEESSHHHHHHHHHHHHTTCE--------
T ss_pred             CcHHHHHHHHHHHh--c------C------------------C---CCEEEEecCCcccHHHHHHHHhcCCe--------
Confidence            57889999998754  1      1                  2   46899999999985432 22222211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.... ..       .|      +++|++.+.+.     ++.+|+++..+...|.+.+    +++|.++|++
T Consensus       112 ---~~~v~~~~~-~~-------~d------~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  164 (416)
T 3isl_A          112 ---VHMLECEWG-TV-------FD------PEDIIREIKKV-----KPKIVAMVHGETSTGRIHP----LKAIGEACRT  164 (416)
T ss_dssp             ---EEEEECCTT-CC-------CC------HHHHHHHHHHH-----CCSEEEEESEETTTTEECC----CHHHHHHHHH
T ss_pred             ---eEEEecCCC-CC-------CC------HHHHHHHHhhC-----CCcEEEEEccCCCCceecC----HHHHHHHHHH
Confidence               112332210 00       12      56677777642     4689999999998897765    7888888874

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=96.35  E-value=0.0034  Score=50.19  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=24.2

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+|++++++...|.+.+    +++|.++|++
T Consensus       165 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  193 (416)
T 1qz9_A          165 DTAVVMLTHVNYKTGYMHD----MQALTALSHE  193 (416)
T ss_dssp             TEEEEEEESBCTTTCBBCC----HHHHHHHHHH
T ss_pred             CceEEEEeccccCcccccC----HHHHHHHHHH
Confidence            6789999999988888765    7889998874

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=96.34  E-value=0.0026  Score=50.40  Aligned_cols=97  Identities=11%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhh-cCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLS-TTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s-~s~~~~~~~~~~   79 (159)
                      +++|++|++.+++..  .      .                  +   ...||....+||+.....+. ..|.        
T Consensus        65 t~g~t~a~~~~~~~~--~------~------------------~---gd~Vl~~~~~~~~~~~~~~~~~~g~--------  107 (392)
T 2z9v_A           65 HGEPVLGLEAAAASL--I------S------------------P---DDVVLNLASGVYGKGFGYWAKRYSP--------  107 (392)
T ss_dssp             SSCTHHHHHHHHHHH--C------C------------------T---TCCEEEEESSHHHHHHHHHHHHHCS--------
T ss_pred             eCCchHHHHHHHHHh--c------C------------------C---CCEEEEecCCcccHHHHHHHHHcCC--------
Confidence            478999999999876  1      1                  1   35799999999987422211 0111        


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         .+..+|.... .    .   .+      +++|++.+++.    .++.+|++++.+...|.+.+    +++|.++|++
T Consensus       108 ---~~~~v~~~~~-~----~---~d------~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  162 (392)
T 2z9v_A          108 ---HLLEIEVPYN-E----A---ID------PQAVADMLKAH----PEITVVSVCHHDTPSGTINP----IDAIGALVSA  162 (392)
T ss_dssp             ---CEEEEECCTT-S----C---CC------HHHHHHHHHHC----TTCCEEEEESEEGGGTEECC----HHHHHHHHHH
T ss_pred             ---ceEEeeCCCC-C----C---CC------HHHHHHHHhcC----CCCcEEEEeccCCCCceecc----HHHHHHHHHH
Confidence               1122332110 0    0   12      56677777642    35678999999988887765    7899999874

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=96.33  E-value=0.0053  Score=50.49  Aligned_cols=107  Identities=10%  Similarity=0.012  Sum_probs=63.0

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      +||++|++.|++...        .                  +   ...||+..+..|+.+...+.+++..  +.... .
T Consensus        90 ~sGt~Ai~~al~al~--------~------------------~---Gd~Vl~~~~~~y~~~~~~~~l~g~~--~~~~~-~  137 (431)
T 3ht4_A           90 ISGTHAISTALFGIL--------R------------------P---GDELLYITGKPYDTLEEIVGVRGKG--VGSFK-E  137 (431)
T ss_dssp             CSHHHHHHHHHHTTC--------C------------------T---TCEEEECSSSCCTTHHHHTTSSSCS--SSCSG-G
T ss_pred             eCHHHHHHHHHHHhC--------C------------------C---CCEEEEeCCCCchhHHHHHhhcccc--cchHH-H
Confidence            589999999985321        1                  2   3578888877888888877777641  11100 0


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccccc-CCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQS-EGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG-~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .+...+..|.... .     ..|      +++|++.+.      .++.+|++|+..+ ..|. ..+...+++|.++|++
T Consensus       138 ~G~~~~~v~~~~~-~-----~~d------~e~l~~~l~------~~tk~V~i~~sp~np~~~-~~~~~~l~~i~~la~~  197 (431)
T 3ht4_A          138 YNIGYNAVPLTEG-G-----LVD------FEAVAAAIH------SNTKMIGIQRSKGYATRP-SFTISQIKEMIAFVKE  197 (431)
T ss_dssp             GTCEEEECCBCTT-S-----SBC------HHHHHHHCC------TTEEEEEEECSCTTSSSC-CCCHHHHHHHHHHHHH
T ss_pred             cCCEEEEeCCCCC-C-----CcC------HHHHHhhcC------CCCeEEEEECCCCCCCCC-cCCHHHHHHHHHHHHh
Confidence            1111122221000 0     012      566666653      3689999996333 3343 5678899999999974

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=96.31  E-value=0.0046  Score=49.14  Aligned_cols=99  Identities=10%  Similarity=0.124  Sum_probs=60.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +|  +..||....+||+....+... |..        
T Consensus       105 ~~g~~~al~~~~~~l~--------~------------------~g--~d~vl~~~p~~~~~~~~~~~~-g~~--------  147 (398)
T 3ele_A          105 TMGAAASLSICFRALT--------S------------------DA--YDEFITIAPYFPEYKVFVNAA-GAR--------  147 (398)
T ss_dssp             ESSHHHHHHHHHHHHC--------C------------------ST--TCEEEEESSCCTHHHHHHHHT-TCE--------
T ss_pred             ccCHHHHHHHHHHHHc--------C------------------CC--CCEEEEeCCCchhhHHHHHHc-CCE--------
Confidence            3678999999988651        1                  23  478999999999876544332 211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|....  .+.     .+      +++|++.+.      .++.+|++...+...|.+. |.+.+++|.++|++
T Consensus       148 ---~~~v~~~~~--~~~-----~d------~~~l~~~l~------~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~  203 (398)
T 3ele_A          148 ---LVEVPADTE--HFQ-----ID------FDALEERIN------AHTRGVIINSPNNPSGTVY-SEETIKKLSDLLEK  203 (398)
T ss_dssp             ---EEEECCCTT--TSS-----CC------HHHHHHTCC------TTEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHH
T ss_pred             ---EEEEecCCc--CCc-----CC------HHHHHHHhC------cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHh
Confidence               111222100  000     02      456665543      3577888876677778754 66779999999963

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=96.29  E-value=0.0033  Score=50.15  Aligned_cols=42  Identities=14%  Similarity=0.161  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      .++.+|+++..+...|.+. +++.+++|.++|++
T Consensus       157 ~~~l~~~~~------~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~  198 (410)
T 3e2y_A          157 PRELESKFS------SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVK  198 (410)
T ss_dssp             HHHHHTTCC------TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHhhcC------CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHH
Confidence            455555442      3688999998888888765 77889999999974

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=96.28  E-value=0.0012  Score=52.06  Aligned_cols=97  Identities=6%  Similarity=0.001  Sum_probs=60.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhc---CCCcccccc
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLST---THSKYIHKI   77 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~---s~~~~~~~~   77 (159)
                      +++|++|++.+++..+ .      .                  +   +.+||....+||+.......+   .|..     
T Consensus        82 ~~g~t~a~~~~~~~~~-~------~------------------~---gd~vl~~~~~~~~~~~~~~~~~~~~g~~-----  128 (390)
T 1elu_A           82 TDNVTTGCDIVLWGLD-W------H------------------Q---GDEILLTDCEHPGIIAIVQAIAARFGIT-----  128 (390)
T ss_dssp             ESSHHHHHHHHHHHSC-C------C------------------T---TCEEEEETTCCHHHHHHHHHHHHHHCCE-----
T ss_pred             eCChHHHHHHHHhCCC-C------C------------------C---CCEEEEecCcccHHHHHHHHHHHHhCcE-----
Confidence            3689999999998763 1      1                  1   468999999999976442221   1211     


Q ss_pred             CCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          78 DIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        78 ~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                            +..+|.+.. ..+     ..+      ++.|++.+.      +++.+|++++.+...|.+.+    +++|.++|
T Consensus       129 ------~~~v~~~~~-~~~-----~~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----~~~i~~l~  180 (390)
T 1elu_A          129 ------YRFFPVAAT-LNQ-----GDA------AAVLANHLG------PKTRLVILSHLLWNTGQVLP----LAEIMAVC  180 (390)
T ss_dssp             ------EEEECCGGG-SSS-----SCH------HHHHHTTCC------TTEEEEEEESBCTTTCCBCC----HHHHHHHH
T ss_pred             ------EEEEcCCCC-CCc-----cch------HHHHHHhcC------CCceEEEEeccccCCceecC----HHHHHHHH
Confidence                  111222100 000     012      455555442      36899999999988898766    88999999


Q ss_pred             c
Q psy4805         158 K  158 (159)
Q Consensus       158 ~  158 (159)
                      +
T Consensus       181 ~  181 (390)
T 1elu_A          181 R  181 (390)
T ss_dssp             H
T ss_pred             h
Confidence            7

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=96.28  E-value=0.0076  Score=47.07  Aligned_cols=99  Identities=8%  Similarity=-0.057  Sum_probs=60.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhc--CCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLST--THSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~--s~~~~~~~~~   78 (159)
                      +++|++|++.|++....++..                      +   ...||.....|++.......+  .|.       
T Consensus        66 ~~g~~~a~~~~~~~~~~~~~~----------------------~---gd~vi~~~~~~~~~~~~~~~~~~~g~-------  113 (382)
T 4hvk_A           66 TSGATEANNLAIIGYAMRNAR----------------------K---GKHILVSAVEHMSVINPAKFLQKQGF-------  113 (382)
T ss_dssp             ESSHHHHHHHHHHHHHHHHGG----------------------G---CCEEEEETTCCHHHHHHHHHHHHTTC-------
T ss_pred             ECCchHHHHHHHHHhhhhhcC----------------------C---CCEEEECCCCcHHHHHHHHHHHhcCC-------
Confidence            468899999999976543211                      1   457888888888765433222  111       


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                          .+..+|... ..    .   .|      +++|++.+.      .+..+|+++..+...|.+.+    +++|.++|+
T Consensus       114 ----~~~~v~~~~-~~----~---~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----~~~i~~l~~  165 (382)
T 4hvk_A          114 ----EVEYIPVGK-YG----E---VD------VSFIDQKLR------DDTILVSVQHANNEIGTIQP----VEEISEVLA  165 (382)
T ss_dssp             ----EEEEECBCT-TS----C---BC------HHHHHHHCC------TTEEEEECCSBCTTTCBBCC----HHHHHHHHS
T ss_pred             ----EEEEeccCC-CC----C---cC------HHHHHHHhc------cCceEEEEECCCCCceeeCC----HHHHHHHHH
Confidence                111222211 00    0   12      456666553      36789999999988887765    778999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       166 ~  166 (382)
T 4hvk_A          166 G  166 (382)
T ss_dssp             S
T ss_pred             H
Confidence            5

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=96.27  E-value=0.0059  Score=49.93  Aligned_cols=109  Identities=16%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++++++++.+++....                          ++.++.+||....+||+......++.......-..  
T Consensus       134 t~g~t~al~~~~~~~~~--------------------------~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~--  185 (465)
T 3e9k_A          134 MNALTVNLHLLMLSFFK--------------------------PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE--  185 (465)
T ss_dssp             CSCHHHHHHHHHHHHCC--------------------------CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH--
T ss_pred             ECCHHHHHHHHHHHhcc--------------------------ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCccee--
Confidence            46888888888875521                          12136789999999999776443322100000000  


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                       ......|.+. ...       .+      +++|++.|+++   .+++++|+++.++...|.+.+    +++|.++|++
T Consensus       186 -~~v~~~~~~~-~~~-------~d------~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~  242 (465)
T 3e9k_A          186 -SMRMIKPREG-EET-------LR------IEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN----IPAITKAGQA  242 (465)
T ss_dssp             -HEEEECCCTT-CSS-------CC------HHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC----HHHHHHHHHH
T ss_pred             -eeEEEecCCC-CCc-------cC------HHHHHHHHHhc---CCCeEEEEEeCcccCcceeec----HHHHHHHHHH
Confidence             0000112111 000       12      56777788764   247999999999999998865    6888888864

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=96.26  E-value=0.005  Score=48.85  Aligned_cols=101  Identities=9%  Similarity=-0.032  Sum_probs=60.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCc-eEEEEcCCCCccchhhhhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNL-SILSFKGAFHGRTLGCLSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~-~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~   79 (159)
                      +++|++|++.+++....++...                         .. .||.....|++.......+....       
T Consensus        86 ~~g~t~al~~~~~~l~~~~~~~-------------------------gd~~Vl~~~~~~~~~~~~~~~~~~~g-------  133 (400)
T 3vax_A           86 TSGATESNNIALLGLAPYGERT-------------------------GRRHIITSAIEHKAVLEPLEHLAGRG-------  133 (400)
T ss_dssp             ESCHHHHHHHHHHTTHHHHHHH-------------------------TCCEEEEETTSCHHHHHHHHHHHTTT-------
T ss_pred             eCCHHHHHHHHHHHHHHhhccC-------------------------CCCEEEECccccHhHHHHHHHHHhcC-------
Confidence            3688999999999886553221                         34 78887777776543332221100       


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        ..+..+|... .  .  .   .|      +++|++.+.      ++..+|++++++...|.+.+    +++|.++|++
T Consensus       134 --~~~~~v~~~~-~--~--~---~d------~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----l~~i~~la~~  187 (400)
T 3vax_A          134 --FEVDFLTPGP-S--G--R---IS------VEGVMERLR------PDTLLVSLMHVNNETGVIQP----VAELAQQLRA  187 (400)
T ss_dssp             --CEEEEECCCT-T--C--C---CC------HHHHHTTCC------TTEEEEECCSBCTTTCBBCC----HHHHHHHHTT
T ss_pred             --CeEEEEccCC-C--C--C---cC------HHHHHHhcC------CCceEEEEECCCCCceeeCc----HHHHHHHHHh
Confidence              0111222211 0  0  0   12      455655543      36789999999998898765    6899999975

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=96.26  E-value=0.0022  Score=50.93  Aligned_cols=103  Identities=9%  Similarity=-0.026  Sum_probs=59.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++.....      |.                +.+  +..||....+||+....+......         
T Consensus        97 t~g~~~al~~~~~~~~~~------g~----------------~~~--~d~vl~~~p~~~~~~~~~~~~g~~---------  143 (396)
T 3jtx_A           97 VLGSREALFSFVQTVLNP------VS----------------DGI--KPAIVSPNPFYQIYEGATLLGGGE---------  143 (396)
T ss_dssp             ESSHHHHHHHHHHHHCCC-------------------------CC--CCEEEEEESCCHHHHHHHHHTTCE---------
T ss_pred             cCCcHHHHHHHHHHHhCC------CC----------------ccC--CCEEEEcCCCcHhHHHHHHHcCCE---------
Confidence            367889999998876321      10                001  368999999999887654433221         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.......       .|      +++|++.+..      ++.+|+++..+...|.+. |.+.+++|.++|++
T Consensus       144 ---~~~v~~~~~g~~-------~d------~~~l~~~~~~------~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~  199 (396)
T 3jtx_A          144 ---IHFANCPAPSFN-------PD------WRSISEEVWK------RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDK  199 (396)
T ss_dssp             ---EEEEECCTTTCC-------CC------GGGSCHHHHH------TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHH
T ss_pred             ---EEEeecCCCCCc-------cC------HHHHHHhhcc------CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHH
Confidence               111222110000       01      3344555543      466777765577778754 66779999999974

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=96.25  E-value=0.0033  Score=49.47  Aligned_cols=40  Identities=8%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+..     .++.+|++++.+...|.+.+    +++|.++|++
T Consensus       126 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~  165 (385)
T 2bkw_A          126 LELITEKLSQ-----NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQ  165 (385)
T ss_dssp             HHHHHHHHHH-----SCCSEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             HHHHHHHHhc-----CCCCEEEEEccCCCcCeEcC----HHHHHHHHHh
Confidence            5667777764     25678999999998898765    7788888874

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.24  E-value=0.0038  Score=49.79  Aligned_cols=99  Identities=14%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...|+....+||+....+. ..|..        
T Consensus       107 ~~g~t~al~~~~~~l~--------~------------------~---gd~Vl~~~~~~~~~~~~~~-~~g~~--------  148 (389)
T 1o4s_A          107 TNGAKQALFNAFMALL--------D------------------P---GDEVIVFSPVWVSYIPQII-LAGGT--------  148 (389)
T ss_dssp             ESHHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCTTHHHHHH-HTTCE--------
T ss_pred             ecCHHHHHHHHHHHhC--------C------------------C---CCEEEEcCCCchhHHHHHH-HcCCE--------
Confidence            3678899999987651        1                  1   4579999999999765432 22211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.... ..+.     .+      +++|++.+.      .++.+|+++..+...|.+ +|++++++|.++|++
T Consensus       149 ---~~~v~~~~~-~~~~-----~d------~~~l~~~l~------~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~  205 (389)
T 1o4s_A          149 ---VNVVETFMS-KNFQ-----PS------LEEVEGLLV------GKTKAVLINSPNNPTGVV-YRREFLEGLVRLAKK  205 (389)
T ss_dssp             ---EEEEECCGG-GTTC-----CC------HHHHHHTCC------TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEEecCCc-cCCC-----CC------HHHHHHhcc------cCceEEEEcCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence               111222100 0000     02      455655543      257888888777777875 578999999999974

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.22  E-value=0.00064  Score=54.70  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=26.5

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+|+++..+...|.+ +|++++++|.++|++
T Consensus       174 ~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~  205 (409)
T 2gb3_A          174 RTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAER  205 (409)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHH
Confidence            67888888888778876 467999999999974

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.20  E-value=0.01  Score=47.25  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+...     ++.+||+.  +++.|.+.+    +++|+++|++
T Consensus       153 ~~~l~~~i~~~-----~~~~v~~~--~~~~G~~~~----l~~i~~l~~~  190 (417)
T 3n0l_A          153 YEKVREIAKKE-----KPKLIVCG--ASAYARVID----FAKFREIADE  190 (417)
T ss_dssp             HHHHHHHHHHH-----CCSEEEEC--CSSCCSCCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHhc-----CCeEEEEC--CcccCccCC----HHHHHHHHHH
Confidence            56777777642     34566643  334576554    8999999974

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=96.19  E-value=0.0031  Score=49.75  Aligned_cols=86  Identities=9%  Similarity=0.004  Sum_probs=54.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ..+|+....+||+....+.. .|..        
T Consensus        95 ~~g~~~a~~~~~~~~~--------~------------------~---gd~vl~~~p~~~~~~~~~~~-~g~~--------  136 (370)
T 2z61_A           95 TGGSSLGLFFALSSII--------D------------------D---GDEVLIQNPCYPCYKNFIRF-LGAK--------  136 (370)
T ss_dssp             ESSHHHHHHHHHHHHC--------C------------------T---TCEEEEESSCCTHHHHHHHH-TTCE--------
T ss_pred             CCChHHHHHHHHHHhc--------C------------------C---CCEEEEeCCCchhHHHHHHH-cCCE--------
Confidence            3688999999998751        1                  1   35899999999997655432 2211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                           .++.|     .       +      +++|++.+.      .++.+|+++..+...|.+.+.+     |.++|+
T Consensus       137 -----~~~v~-----~-------d------~~~l~~~l~------~~~~~v~~~~p~nptG~~~~~~-----l~~~~~  180 (370)
T 2z61_A          137 -----PVFCD-----F-------T------VESLEEALS------DKTKAIIINSPSNPLGEVIDRE-----IYEFAY  180 (370)
T ss_dssp             -----EEEEC-----S-------S------HHHHHHHCC------SSEEEEEEESSCTTTCCCCCHH-----HHHHHH
T ss_pred             -----EEEeC-----C-------C------HHHHHHhcc------cCceEEEEcCCCCCcCcccCHH-----HHHHHH
Confidence                 11111     0       1      455655543      2677888887777788876554     777775

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=96.13  E-value=0.0096  Score=47.99  Aligned_cols=100  Identities=8%  Similarity=-0.047  Sum_probs=59.5

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++...        .                  +   ...|+....+||+....+....|..         
T Consensus       120 ~g~~~al~~~~~~l~--------~------------------~---gd~Vl~~~p~y~~~~~~~~~~~g~~---------  161 (430)
T 2x5f_A          120 NALTHGLSLVGDLFV--------N------------------Q---DDTILLPEHNWGNYKLVFNTRNGAN---------  161 (430)
T ss_dssp             SHHHHHHHHHHHHHC--------C------------------T---TCEEEEESSCCTHHHHHHTTTTCCE---------
T ss_pred             CCchHHHHHHHHHHh--------C------------------C---CCEEEEcCCcCccHHHHHHHhcCCe---------
Confidence            577899999888541        1                  2   3579999999999765443302211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCe-EEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPV-AGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~v-AAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|.....  +.     .+      +++|++.+...   +.+. +.+|..| +...|.+ +|.+++++|.++|++
T Consensus       162 --~~~~~~~~~~--~~-----~d------~~~l~~~l~~~---~~~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~~~~  220 (430)
T 2x5f_A          162 --LQTYPIFDKD--GH-----YT------TDSLVEALQSY---NKDKVIMILNYP-NNPTGYT-PTHKEVTTIVEAIKA  220 (430)
T ss_dssp             --EEEECCBCTT--SC-----BC------SHHHHHHHHHC---CSSEEEEEECSS-CTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             --EEEEeccCcc--CC-----cC------HHHHHHHHHhc---CCCCEEEEEcCC-CCCCCCc-CCHHHHHHHHHHHHh
Confidence              1112221100  10     12      45667777653   2244 4566677 7667864 688999999999974

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=96.12  E-value=0.035  Score=46.20  Aligned_cols=115  Identities=15%  Similarity=0.027  Sum_probs=63.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHh--hcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQN--KQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKID   78 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~   78 (159)
                      +++||||+..|++.+|.++..  +..|.                 .+.++..|+.-.. .|.....++.+.+... .   
T Consensus       171 t~ggtea~~~al~~ar~~~~~~~~~~G~-----------------~~~~~~~vl~s~~-~h~s~~~~~~~~g~g~-~---  228 (515)
T 2jis_A          171 CPGGSISNMYAVNLARYQRYPDCKQRGL-----------------RTLPPLALFTSKE-CHYSIQKGAAFLGLGT-D---  228 (515)
T ss_dssp             ESSHHHHHHHHHHHHHHHHCTTHHHHCG-----------------GGSCCEEEEEETT-SCTHHHHHHHHTTSCG-G---
T ss_pred             cCCcHHHHHHHHHHHHHHHhhHHhhcCc-----------------cccCCeEEEECCC-ccHHHHHHHHHcCCCC-C---
Confidence            368999999999999876410  00020                 0001335555554 4666665555544310 0   


Q ss_pred             CCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          79 IPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        79 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                          .+..+|... .  +.     -+      +++|++.|......+..+.+|++.......|.+.+    +++|.++|+
T Consensus       229 ----~v~~v~~~~-~--~~-----~d------~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~  286 (515)
T 2jis_A          229 ----SVRVVKADE-R--GK-----MV------PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQ  286 (515)
T ss_dssp             ----GEEEECBCT-T--SC-----BC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHH
T ss_pred             ----cEEEEecCC-C--Cc-----CC------HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHH
Confidence                112233211 0  00     12      45666666542111235889999887777787754    789999997


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       287 ~  287 (515)
T 2jis_A          287 R  287 (515)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=96.09  E-value=0.0031  Score=49.11  Aligned_cols=97  Identities=8%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhh-cCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLS-TTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s-~s~~~~~~~~~~   79 (159)
                      +++|++|++.|++.++.                          +   +.+||.+...||+.++..+. ..|.        
T Consensus        62 ~~g~t~a~~~~~~~~~~--------------------------~---gd~vi~~~~~~~~~~~~~~~~~~g~--------  104 (366)
T 1m32_A           62 QGSGSYAVEAVLGSALG--------------------------P---QDKVLIVSNGAYGARMVEMAGLMGI--------  104 (366)
T ss_dssp             ESCHHHHHHHHHHHSCC--------------------------T---TCCEEEEESSHHHHHHHHHHHHHTC--------
T ss_pred             ecChHHHHHHHHHHhcC--------------------------C---CCeEEEEeCCCccHHHHHHHHHhCC--------
Confidence            47899999999987621                          1   34688888899987543221 1111        


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         .+..+|....   .     ..+      +++|++.+...    .++.+|++.......|.+.+    +++|.++|++
T Consensus       105 ---~~~~v~~~~~---~-----~~d------~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  159 (366)
T 1m32_A          105 ---AHHAYDCGEV---A-----RPD------VQAIDAILNAD----PTISHIAMVHSETTTGMLNP----IDEVGALAHR  159 (366)
T ss_dssp             ---CEEEEECCTT---S-----CCC------HHHHHHHHHHC----TTCCEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             ---ceEEEeCCCC---C-----CCC------HHHHHHHHhcC----CCeEEEEEecccCCcceecC----HHHHHHHHHH
Confidence               1112232110   0     012      56677777652    24556666555555677665    7899999874

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=96.08  E-value=0.006  Score=48.48  Aligned_cols=42  Identities=12%  Similarity=0.086  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+..      +..+||++..+...|.+ +|++++++|.++|++
T Consensus       169 ~~~l~~~l~~------~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~  210 (407)
T 3nra_A          169 LTGLEEAFKA------GARVFLFSNPNNPAGVV-YSAEEIGQIAALAAR  210 (407)
T ss_dssp             HHHHHHHHHT------TCCEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh------CCcEEEEcCCCCCCCcc-cCHHHHHHHHHHHHH
Confidence            5677777753      33445444446767864 578899999999974

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=96.01  E-value=0.0024  Score=49.66  Aligned_cols=30  Identities=10%  Similarity=-0.033  Sum_probs=25.4

Q ss_pred             CCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++.+|++++.++..|.+.+    +++|.++|++
T Consensus        82 ~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~  111 (331)
T 1pff_A           82 PNTRIVYFETPANPTLKVID----IEDAVKQARK  111 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCcCcccC----HHHHHHHHhh
Confidence            36889999999998898774    8999999975

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=95.97  E-value=0.01  Score=48.63  Aligned_cols=102  Identities=9%  Similarity=0.053  Sum_probs=61.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...||....+|||....... .|..        
T Consensus       146 t~G~~~al~~~~~~l~--------~------------------~---Gd~Vlv~~p~y~~~~~~~~~-~g~~--------  187 (448)
T 3aow_A          146 TSGSQQALDLIGRVFL--------N------------------P---GDIVVVEAPTYLAALQAFNF-YEPQ--------  187 (448)
T ss_dssp             ESSHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCHHHHHHHHT-TCCE--------
T ss_pred             eCcHHHHHHHHHHHHc--------C------------------C---CCEEEEeCCChHHHHHHHHH-cCCE--------
Confidence            3678899999988751        1                  2   36899999999997654332 2211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|...    .  .   .+      +++|++.+........++.+|++.|. +.-.|.+ .|.+++++|.++|++
T Consensus       188 ---~~~v~~~~----~--g---~d------~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~  248 (448)
T 3aow_A          188 ---YIQIPLDD----E--G---MK------VEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASE  248 (448)
T ss_dssp             ---EEEEEEET----T--E---EC------HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEeccCC----C--C---CC------HHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHH
Confidence               11122210    0  0   12      45666666511000236888877774 5556765 678999999999974

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=95.95  E-value=0.0062  Score=48.41  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEE-cccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVV-EPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~-EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+...     ++.+||+ +|..|   .+ .+   +++|.++|++
T Consensus       152 ~~~l~~~l~~~-----~~~~v~~~~p~~~---~~-~~---l~~i~~l~~~  189 (407)
T 2dkj_A          152 LEEVRRLALEH-----RPKVIVAGASAYP---RF-WD---FKAFREIADE  189 (407)
T ss_dssp             HHHHHHHHHHH-----CCSEEEECCSSCC---SC-CC---HHHHHHHHHH
T ss_pred             HHHHHHHHhhc-----CCeEEEEeccccC---CC-CC---HHHHHHHHHH
Confidence            56677777642     4567777 78875   33 33   8999999974

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.0018  Score=53.56  Aligned_cols=103  Identities=17%  Similarity=0.057  Sum_probs=60.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|+||+..|++.+|.+..++ +|.                    .+..||.-.. .|.....++...|..        
T Consensus       132 ~~ggt~a~~~a~~a~~~~~~~~-~g~--------------------~~~~Vi~~~~-~h~~~~~~~~~~G~~--------  181 (497)
T 3mc6_A          132 TSGGTESLLLACLSAKMYALHH-RGI--------------------TEPEIIAPVT-AHAGFDKAAYYFGMK--------  181 (497)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHH-SCC--------------------SSCEEEEETT-SCHHHHHHHHHSCCE--------
T ss_pred             cCcHHHHHHHHHHHHHHHHHhc-CCC--------------------CCceEEEeCC-ccHHHHHHHHHcCCe--------
Confidence            4789999999999999886543 121                    2455666554 455555555544421        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.....  +.     .|      +++|++.+.      .++++|+++..+...|.+.+    +++|.++|++
T Consensus       182 ---~~~v~~~~~~--~~-----~d------~~~l~~~i~------~~~~~v~~~~p~nptG~~~~----l~~i~~la~~  234 (497)
T 3mc6_A          182 ---LRHVELDPTT--YQ-----VD------LGKVKKFIN------KNTVLLVGSAPNFPHGIADD----IEGLGKIAQK  234 (497)
T ss_dssp             ---EEEECBCTTT--CS-----BC------TTTTGGGCC------SSEEEEEEETTCTTTCCCCS----CTTTTTHHHH
T ss_pred             ---EEEEecCccc--Cc-----CC------HHHHHHHHh------hCCEEEEEECCCCCCCcCCC----HHHHHHHHHH
Confidence               1123321100  00     01      334444442      36789999988887888755    5677777763

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=95.85  E-value=0.0015  Score=52.95  Aligned_cols=99  Identities=15%  Similarity=0.058  Sum_probs=59.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++....                          +   ...|+....+|++....+......         
T Consensus       124 t~g~t~al~~~~~~l~~--------------------------~---gd~vl~~~p~~~~~~~~~~~~g~~---------  165 (427)
T 3dyd_A          124 TSGCSQAIDLCLAVLAN--------------------------P---GQNILVPRPGFSLYKTLAESMGIE---------  165 (427)
T ss_dssp             ESSHHHHHHHHHHHHCC--------------------------T---TCEEEEEESCCTHHHHHHHHTTCE---------
T ss_pred             ecCcHHHHHHHHHHhcC--------------------------C---CCEEEEcCCCchhHHHHHHHcCCE---------
Confidence            46889999999987621                          1   457999999999876544433211         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.... ..+  .   .|      ++++++.+.      .+..++++...+...|+ .+|++++++|.++|++
T Consensus       166 ---~~~~~~~~~-~~~--~---~d------~~~l~~~l~------~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~  222 (427)
T 3dyd_A          166 ---VKLYNLLPE-KSW--E---ID------LKQLEYLID------EKTACLIVNNPSNPCGS-VFSKRHLQKILAVAAR  222 (427)
T ss_dssp             ---EEEEEEEGG-GTT--E---EC------HHHHHSSCC------TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHH
T ss_pred             ---EEEEecccc-cCC--C---CC------HHHHHHHhc------cCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHH
Confidence               011121100 000  0   02      455555543      24555666555777887 4578899999999974

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=95.80  E-value=0.0047  Score=49.53  Aligned_cols=99  Identities=7%  Similarity=-0.016  Sum_probs=57.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...||....+||+....+... |..        
T Consensus       105 t~g~~~a~~~~~~~~~--------~------------------~---gd~Vl~~~p~~~~~~~~~~~~-g~~--------  146 (412)
T 2x5d_A          105 TIGSKEGLAHLMLATL--------D------------------H---GDTILVPNPSYPIHIYGAVIA-GAQ--------  146 (412)
T ss_dssp             ESCHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCHHHHHHHHHH-TCE--------
T ss_pred             cCChHHHHHHHHHHhC--------C------------------C---CCEEEEcCCCchhHHHHHHHc-CCE--------
Confidence            3688999999988641        1                  1   357999999999987654332 111        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|....   .  .  +.     -.+++|++.+.      .++.+|++.-.+...|.+ +|.+++++|.++|++
T Consensus       147 ---~~~~~~~~~---~--~--~~-----~d~~~l~~~i~------~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~  203 (412)
T 2x5d_A          147 ---VRSVPLVPG---I--D--FF-----NELERAIRESI------PKPRMMILGFPSNPTAQC-VELDFFERVVALAKQ  203 (412)
T ss_dssp             ---EEEEECSTT---S--C--HH-----HHHHHHHHTEE------SCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEeecCCc---c--C--CC-----CCHHHHHHhcc------cCceEEEECCCCCCCCCc-CCHHHHHHHHHHHHH
Confidence               111222100   0  0  00     11455555442      245666664335556765 578999999999974

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=95.79  E-value=0.0037  Score=49.52  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhh-hcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCL-STTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~-s~s~~~~~~~~~~   79 (159)
                      +++|++|++.|++...        .                  +   ...||....+||+.....+ ...|.        
T Consensus        76 ~~g~t~a~~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~~~g~--------  118 (393)
T 2huf_A           76 SASGHGGMEATLCNLL--------E------------------D---GDVILIGHTGHWGDRSADMATRYGA--------  118 (393)
T ss_dssp             SSCHHHHHHHHHHHHC--------C------------------T---TCEEEEEESSHHHHHHHHHHHHTTC--------
T ss_pred             cCcHHHHHHHHHHHHh--------C------------------C---CCEEEEECCCcchHHHHHHHHHcCC--------
Confidence            4789999999998761        1                  2   4579999999999532111 11111        


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         .+..+|.... .    .   .+      +++|++.+...     ++.+|+++..+...|.+.+    +++|.++|++
T Consensus       119 ---~~~~v~~~~~-~----~---~d------~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~----l~~i~~~~~~  172 (393)
T 2huf_A          119 ---DVRVVKSKVG-Q----S---LS------LDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG----LEGVGALCHQ  172 (393)
T ss_dssp             ---EEEEEECCTT-C----C---CC------HHHHHHHHHHH-----CCSEEEEESEETTTTEECC----CTTHHHHHHH
T ss_pred             ---eeEEEeCCCC-C----C---CC------HHHHHHHHhcc-----CCcEEEEEccCCCccccCC----HHHHHHHHHH
Confidence               1112332110 0    0   12      56677777542     4578888898888898765    7888888864

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=95.74  E-value=0.0064  Score=48.44  Aligned_cols=96  Identities=8%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.+++...        .                  +   ..+||....+||+....+.. .|..         
T Consensus        98 ~g~~~al~~~~~~~~--------~------------------~---gd~Vl~~~p~y~~~~~~~~~-~g~~---------  138 (397)
T 2zyj_A           98 TGSQQALDLVGKVFL--------D------------------E---GSPVLLEAPSYMGAIQAFRL-QGPR---------  138 (397)
T ss_dssp             SHHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCHHHHHHHHT-TCCE---------
T ss_pred             ccHHHHHHHHHHHhC--------C------------------C---CCEEEEeCCCcHHHHHHHHH-cCCE---------
Confidence            577899999988651        1                  1   35799999999997755432 2211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEE-EcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIV-VEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI-~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|...    .  .   .+      +++|++.+..     .++.+|+ ++..+...|.+ .|.+++++|.++|++
T Consensus       139 --~~~~~~~~----~--~---~d------~~~l~~~l~~-----~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~  194 (397)
T 2zyj_A          139 --FLTVPAGE----E--G---PD------LDALEEVLKR-----ERPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVME  194 (397)
T ss_dssp             --EEEEEEET----T--E---EC------HHHHHHHHHH-----CCCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHH
T ss_pred             --EEecCcCC----C--C---CC------HHHHHHHHhh-----cCCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHH
Confidence              11122210    0  0   12      5667777764     1455664 44456667765 578999999999974

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=95.74  E-value=0.018  Score=47.50  Aligned_cols=40  Identities=10%  Similarity=0.033  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.|..     +.+.+|++|+.+...|.+.+    +++|.++|++
T Consensus       189 ~~~l~~ai~~-----~tv~lV~le~p~NptG~v~d----l~~I~~la~~  228 (445)
T 1qgn_A          189 VGALELALNQ-----KKVNLFFTESPTNPFLRCVD----IELVSKLCHE  228 (445)
T ss_dssp             HHHHHHHHHH-----SCEEEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHhcc-----CCCCEEEEeCCCCCCCcccC----HHHHHHHHHH
Confidence            5667777764     24589999999988887764    7788888874

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=95.45  E-value=0.023  Score=44.46  Aligned_cols=96  Identities=8%  Similarity=-0.078  Sum_probs=59.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ..+|+....+||+....+......         
T Consensus        90 ~~g~t~a~~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~g~~---------  131 (363)
T 3ffh_A           90 TAGVDELIELLTRVLL--------D------------------T---TTNTVMATPTFVQYRQNALIEGAE---------  131 (363)
T ss_dssp             ESSHHHHHHHHHHHHC--------S------------------T---TCEEEEEESSCHHHHHHHHHHTCE---------
T ss_pred             eCCHHHHHHHHHHHHc--------c------------------C---CCEEEEcCCChHHHHHHHHHcCCE---------
Confidence            3689999999998641        1                  1   458999999999866544332111         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                         +..+|... .  +.     .+      ++++++.+.      .++.+|+++..+...|.+. |.+.++++.++|+
T Consensus       132 ---~~~v~~~~-~--~~-----~d------~~~l~~~i~------~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~  185 (363)
T 3ffh_A          132 ---VREIPLLQ-D--GE-----HD------LEGMLNAID------EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVP  185 (363)
T ss_dssp             ---EEEEECCT-T--SC-----CC------HHHHHHHCC------TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSC
T ss_pred             ---EEEecCCC-C--CC-----cC------HHHHHHhcc------cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCC
Confidence               11223221 0  00     12      456666552      3678888887788888754 6777888888875

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=95.41  E-value=0.015  Score=46.65  Aligned_cols=102  Identities=8%  Similarity=0.048  Sum_probs=58.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++....+   +                     +| .+.+||....+||+....+......         
T Consensus       111 t~g~t~al~~~~~~l~~~---~---------------------~g-d~~~Vl~~~p~~~~~~~~~~~~g~~---------  156 (437)
T 3g0t_A          111 TVGSMQGCFVSFLVANRT---H---------------------KN-REYGTLFIDPGFNLNKLQCRILGQK---------  156 (437)
T ss_dssp             ESHHHHHHHHHHHHHTTS---C---------------------TT-CSCCEEEEESCCHHHHHHHHHHTCC---------
T ss_pred             eCCHHHHHHHHHHHHhcC---C---------------------CC-CccEEEEeCCCcHhHHHHHHHcCCE---------
Confidence            367889999988866310   0                     23 0127999999999876554332211         


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEE-cccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVV-EPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~-EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|..    +....   .|      +++|++.+..     .++.+|++ .| +...|.+ .|.+.+++|.++|++
T Consensus       157 ---~~~v~~~----~~~~~---~d------~~~l~~~l~~-----~~~~~v~l~~p-~nptG~~-~~~~~l~~i~~~a~~  213 (437)
T 3g0t_A          157 ---FESFDLF----EYRGE---KL------REKLESYLQT-----GQFCSIIYSNP-NNPTWQC-MTDEELRIIGELATK  213 (437)
T ss_dssp             ---CEEEEGG----GGCTT---HH------HHHHHHHHTT-----TCCCEEEEESS-CTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEEeec----CCCCc---cC------HHHHHHHHhc-----CCceEEEEeCC-CCCCCCc-CCHHHHHHHHHHHHH
Confidence               1112221    00000   12      6677777743     24455544 66 6667765 467789999999974

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=95.41  E-value=0.0082  Score=47.51  Aligned_cols=96  Identities=9%  Similarity=-0.001  Sum_probs=58.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccch-hhhhcCCCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTL-GCLSTTHSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~-ga~s~s~~~~~~~~~~   79 (159)
                      +++|++|++.+++...        .                  +   ..+||....+||+... ......|..       
T Consensus        75 ~~g~t~al~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~~~g~~-------  118 (396)
T 2ch1_A           75 SGSAHAGMEAMLSNLL--------E------------------E---GDRVLIAVNGIWAERAVEMSERYGAD-------  118 (396)
T ss_dssp             SSCHHHHHHHHHHHHC--------C------------------T---TCEEEEEESSHHHHHHHHHHHHTTCE-------
T ss_pred             CCcHHHHHHHHHHHhc--------C------------------C---CCeEEEEcCCcccHHHHHHHHHcCCc-------
Confidence            4789999999998761        1                  2   3589999999998531 122222211       


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                          +..+|... .  .     ..+      +++|++.+...     ++.+|+++..+...|.+.+    +++|.++|++
T Consensus       119 ----~~~v~~~~-~--~-----~~d------~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~----~~~i~~l~~~  171 (396)
T 2ch1_A          119 ----VRTIEGPP-D--R-----PFS------LETLARAIELH-----QPKCLFLTHGDSSSGLLQP----LEGVGQICHQ  171 (396)
T ss_dssp             ----EEEEECCT-T--S-----CCC------HHHHHHHHHHH-----CCSEEEEESEETTTTEECC----CTTHHHHHHH
T ss_pred             ----eEEecCCC-C--C-----CCC------HHHHHHHHHhC-----CCCEEEEECCCCCCceecC----HHHHHHHHHH
Confidence                11233211 0  0     012      56677777642     4678888888888888765    7788888863

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=95.41  E-value=0.05  Score=44.96  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       112 ~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++|++.|.+....+..+.+|++.......|.+.    .+++|.++|++
T Consensus       243 ~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~----~l~~I~~l~~~  286 (497)
T 2qma_A          243 TKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAID----DLDFIADMAVK  286 (497)
T ss_dssp             GGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCC----CHHHHHHHHHH
Confidence            445555554211122356788876677777753    38899999974

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=95.36  E-value=0.047  Score=42.45  Aligned_cols=97  Identities=5%  Similarity=-0.068  Sum_probs=59.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ...||....+||+....+... |..        
T Consensus        74 ~~g~~~a~~~~~~~l~--------~------------------~---gd~vl~~~~~~~~~~~~~~~~-g~~--------  115 (354)
T 3ly1_A           74 TAGSSEGIRAAIEAYA--------S------------------L---EAQLVIPELTYGDGEHFAKIA-GMK--------  115 (354)
T ss_dssp             ESHHHHHHHHHHHHHC--------C------------------T---TCEEEEESSSCTHHHHHHHHT-TCE--------
T ss_pred             eCChHHHHHHHHHHHh--------C------------------C---CCeEEECCCCchHHHHHHHHc-CCE--------
Confidence            3678899999988541        1                  1   357999999999876544322 211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHh
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc  157 (159)
                         +..+|... .  +.     .+      +++|++.+.++    .++.+|+++..+...|.+. |.+.+++|.++|
T Consensus       116 ---~~~~~~~~-~--~~-----~d------~~~l~~~l~~~----~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~  170 (354)
T 3ly1_A          116 ---VTKVKMLD-N--WA-----FD------IEGLKAAVAAY----SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK  170 (354)
T ss_dssp             ---EEEECCCT-T--SC-----CC------HHHHHHHHHTC----SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC
T ss_pred             ---EEEecCCC-C--CC-----CC------HHHHHHHhccC----CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC
Confidence               11122210 0  00     12      56777777641    4678888877777778755 667788888877

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=95.32  E-value=0.015  Score=45.46  Aligned_cols=31  Identities=16%  Similarity=0.163  Sum_probs=25.5

Q ss_pred             eEEEEEcccccCC-CCccCCHHHHHHHHHHhcC
Q psy4805         128 VAGIVVEPIQSEG-GDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       128 vAAvI~EPiqG~g-Gv~~pp~~fl~~lr~lc~~  159 (159)
                      +.+|++++.++.. | .++|.+.+++|.++|++
T Consensus       136 ~~~v~~~~p~np~~G-~~~~~~~l~~i~~~~~~  167 (357)
T 3lws_A          136 IACLLLELPQREIGG-VAPAFSELETISRYCRE  167 (357)
T ss_dssp             CSEEEEESSBGGGTS-BCCCHHHHHHHHHHHHH
T ss_pred             cceEEEEcccccCCc-eeCCHHHHHHHHHHHHH
Confidence            7789999887654 6 46789999999999974

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=95.24  E-value=0.017  Score=46.51  Aligned_cols=84  Identities=17%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             CceEEEEcCCCCccchhhhhcCCCccccccCCCCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhcc--CC
Q psy4805          48 NLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNK--KG  125 (159)
Q Consensus        48 r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~--~~  125 (159)
                      ...|+....+||+....+.. .|..           +..+|...    .  .   .+      +++|++.+.....  .+
T Consensus       133 gd~Vl~~~p~y~~~~~~~~~-~g~~-----------~~~v~~~~----~--~---~d------~~~l~~~l~~~~~~~~~  185 (425)
T 1vp4_A          133 ESYCVLDDPAYLGAINAFRQ-YLAN-----------FVVVPLED----D--G---MD------LNVLERKLSEFDKNGKI  185 (425)
T ss_dssp             TCEEEEEESCCHHHHHHHHT-TTCE-----------EEEEEEET----T--E---EC------HHHHHHHHHHHHHTTCG
T ss_pred             CCEEEEeCCCcHHHHHHHHH-cCCE-----------EEEeccCC----C--C---CC------HHHHHHHHHhhhhcccC
Confidence            35899999999997655432 2211           11122210    0  0   12      4566666654100  01


Q ss_pred             CCeEEEEEcc-cccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .++.+|++.| .+...|.+ .|.+++++|.++|++
T Consensus       186 ~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~  219 (425)
T 1vp4_A          186 KQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEK  219 (425)
T ss_dssp             GGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHH
Confidence            2677875544 55556765 578999999999974

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=95.23  E-value=0.07  Score=42.53  Aligned_cols=103  Identities=10%  Similarity=-0.021  Sum_probs=59.7

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|++|++.++++++.+.                        +   ...|+....+||+....+... |..         
T Consensus       105 ~g~~~a~~~~~~~~~~~~------------------------~---gd~Vl~~~p~~~~~~~~~~~~-g~~---------  147 (412)
T 1yaa_A          105 LSGTGALHISAKFFSKFF------------------------P---DKLVYLSKPTWANHMAIFENQ-GLK---------  147 (412)
T ss_dssp             EHHHHHHHHHHHHHHHHC------------------------T---TCCEEEEESCCTTHHHHHHTT-TCC---------
T ss_pred             cchHhHHHHHHHHHHHhC------------------------C---CCEEEEeCCCCccHHHHHHHc-Cce---------
Confidence            578999999988876651                        1   357999999999976543322 211         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                        +..+|..+ ...+  .   .+      +++|++.+...   ......+++...+...|. ..+.+.+++|.++|++
T Consensus       148 --~~~v~~~~-~~~~--~---~d------~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~-~~~~~~l~~l~~~~~~  207 (412)
T 1yaa_A          148 --TATYPYWA-NETK--S---LD------LNGFLNAIQKA---PEGSIFVLHSCAHNPTGL-DPTSEQWVQIVDAIAS  207 (412)
T ss_dssp             --EEEEECEE-TTTT--E---EC------HHHHHHHHHHS---CTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHH
T ss_pred             --EEEEeeec-CCCC--c---cC------HHHHHHHHHhC---CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHH
Confidence              11122200 0000  0   12      56677777642   112334443445555675 5678999999999974

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=95.19  E-value=0.01  Score=47.41  Aligned_cols=99  Identities=17%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      +++|++|++.+++...        .                  +   ..+||....+||+....+. ..|..        
T Consensus       110 ~~g~~~al~~~~~~l~--------~------------------~---gd~vl~~~p~y~~~~~~~~-~~g~~--------  151 (416)
T 1bw0_A          110 CSGGSHGILMAITAIC--------D------------------A---GDYALVPQPGFPHYETVCK-AYGIG--------  151 (416)
T ss_dssp             ESHHHHHHHHHHHHHC--------C------------------T---TCEEEEEESCCTHHHHHHH-HTTCE--------
T ss_pred             eCChHHHHHHHHHHhC--------C------------------C---CCEEEEcCCCcHhHHHHHH-HcCcE--------
Confidence            3678899999988651        1                  1   3589999999999765432 22211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|.... ..+.     .+      +++|++.+..     ...+.+|..| +...|.+ .|++++++|.++|++
T Consensus       152 ---~~~v~~~~~-~~~~-----~d------~~~l~~~l~~-----~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~~~~  208 (416)
T 1bw0_A          152 ---MHFYNCRPE-NDWE-----AD------LDEIRRLKDD-----KTKLLIVTNP-SNPCGSN-FSRKHVEDIVRLAEE  208 (416)
T ss_dssp             ---EEEEEEEGG-GTTE-----EC------HHHHHHHCCT-----TEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             ---EEEeecCcc-cCCC-----CC------HHHHHHHhcc-----CCeEEEEeCC-CCCCCcc-cCHHHHHHHHHHHHH
Confidence               011221000 0000     12      5566666532     2344556666 5556765 678999999999974

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=95.18  E-value=0.023  Score=45.77  Aligned_cols=30  Identities=13%  Similarity=0.046  Sum_probs=25.0

Q ss_pred             CCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++.+|++|.++...|.+.+    +++|.++|++
T Consensus       137 ~~t~lv~~~~~~nptG~~~~----l~~i~~la~~  166 (393)
T 1n8p_A          137 ENTKLVWIETPTNPTLKVTD----IQKVADLIKK  166 (393)
T ss_dssp             SSEEEEEECSSCTTTCCCCC----HHHHHHHHHH
T ss_pred             cCceEEEEECCCCCcceecC----HHHHHHHHHH
Confidence            36889999999999998774    8889998874

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=95.07  E-value=0.033  Score=45.72  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|++|..+.-.|.+.+    +++|.++|++
T Consensus       157 ~~~l~~ai~------~~t~~v~~e~p~NptG~~~d----l~~i~~la~~  195 (430)
T 3ri6_A          157 SLAVEHACD------ETTKLLFLETISNPQLQVAD----LEALSKVVHA  195 (430)
T ss_dssp             HHHHHHHCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHHT
T ss_pred             HHHHHHhhC------CCCeEEEEECCCCCCCeecC----HHHHHHHHHH
Confidence            456666553      36899999998888887664    7788888875

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=95.05  E-value=0.012  Score=46.87  Aligned_cols=30  Identities=10%  Similarity=0.145  Sum_probs=24.3

Q ss_pred             CCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .++.+|++++++...|.+.+    +++|.++|++
T Consensus       164 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~  193 (406)
T 3cai_A          164 KSTRLVAVNSASGTLGGVTD----LRAMTKLVHD  193 (406)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----CHHHHHHHHH
T ss_pred             CCceEEEEeCCcCCccccCC----HHHHHHHHHH
Confidence            36889999999998898765    6788888864

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=95.04  E-value=0.0085  Score=48.18  Aligned_cols=39  Identities=8%  Similarity=0.089  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|++++.+...|.+.+    +++|.++|++
T Consensus       165 ~~~l~~~i~------~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~  203 (432)
T 3a9z_A          165 VEDILAAVR------PTTCLVTIMLANNETGVIMP----ISEISRRIKA  203 (432)
T ss_dssp             HHHHHHTCC------TTEEEEECCSBCTTTCBBCC----HHHHHHHHHH
T ss_pred             HHHHHHhcc------CCceEEEEECcccCcccccC----HHHHHHHHHh
Confidence            455555542      36889999999988898776    4677787763

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=94.99  E-value=0.014  Score=45.93  Aligned_cols=30  Identities=13%  Similarity=0.032  Sum_probs=20.9

Q ss_pred             EEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         129 AGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       129 AAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .++++...+...|.+ .|.+.+++|.++|++
T Consensus       156 ~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~  185 (376)
T 3ezs_A          156 DLVILNSPNNPTGRT-LSLEELISWVKLALK  185 (376)
T ss_dssp             SEEEECSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCcCCC-CCHHHHHHHHHHHHH
Confidence            455554346667765 477889999999974

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=94.98  E-value=0.026  Score=44.31  Aligned_cols=31  Identities=13%  Similarity=0.143  Sum_probs=21.9

Q ss_pred             CeEEEE-EcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIV-VEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI-~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++ .+| +...|.+ .|.+++++|.++|++
T Consensus       146 ~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~~~~  177 (364)
T 1lc5_A          146 DLDCLFLCTP-NNPTGLL-PERPLLQAIADRCKS  177 (364)
T ss_dssp             TCCEEEEESS-CTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCCCCCC-CCHHHHHHHHHHhhh
Confidence            344444 567 5556765 578999999999974

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=94.88  E-value=0.023  Score=46.36  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEE-cccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVV-EPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~-EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+...     +...+++ .|..+.       ..++++|+++|++
T Consensus       174 ~~~l~~~i~~~-----~~~~i~~~~~~~~~-------~~~l~~i~~l~~~  211 (447)
T 3h7f_A          174 MDAVRATALEF-----RPKVIIAGWSAYPR-------VLDFAAFRSIADE  211 (447)
T ss_dssp             HHHHHHHHHHH-----CCSEEEEECSSCCS-------CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-----CCeEEEEcCCCCCC-------ccCHHHHHHHHHH
Confidence            56677777543     2235555 455433       2388999999974

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=94.77  E-value=0.019  Score=46.42  Aligned_cols=39  Identities=15%  Similarity=0.080  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      +++.+|++|..+...|.+.+    +++|.++|++
T Consensus       141 ~~~l~~~i~------~~t~~v~~~~p~nptG~~~~----l~~i~~la~~  179 (403)
T 3cog_A          141 IKLLEAAIT------PETKLVWIETPTNPTQKVID----IEGCAHIVHK  179 (403)
T ss_dssp             HHHHHHHCC------TTEEEEEEESSCTTTCCCCC----HHHHHHHHTS
T ss_pred             HHHHHHhcC------cCCeEEEEECCCCCCCeeeC----HHHHHHHHHH
Confidence            455655543      36889999999888888764    8999999975

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=94.76  E-value=0.027  Score=44.91  Aligned_cols=95  Identities=7%  Similarity=-0.007  Sum_probs=57.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||++|++.+++..+ .      .                  +   ..+||....+||+....... .|..        
T Consensus        53 ~~ggt~al~~~~~~l~-~------~------------------~---gd~Vl~~~~~~~~~~~~~~~-~g~~--------   95 (394)
T 1o69_A           53 LNSATAALHLALRVAG-V------K------------------Q---DDIVLASSFTFIASVAPICY-LKAK--------   95 (394)
T ss_dssp             ESCHHHHHHHHHHHTT-C------C------------------T---TCEEEEESSSCGGGTHHHHH-TTCE--------
T ss_pred             eCCHHHHHHHHHHHcC-C------C------------------C---CCEEEECCCccHHHHHHHHH-cCCE--------
Confidence            4789999999998752 0      1                  2   45799999999988654433 2211        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|...   .+.     .+      +++|++.+...   ++++.+|++++..|       ....+++|.++|++
T Consensus        96 ---~~~v~~~~---~~~-----~d------~~~l~~~i~~~---~~~~~~v~~~~~~G-------~~~~l~~i~~l~~~  147 (394)
T 1o69_A           96 ---PVFIDCDE---TYN-----ID------VDLLKLAIKEC---EKKPKALILTHLYG-------NAAKMDEIVEICKE  147 (394)
T ss_dssp             ---EEEECBCT---TSS-----BC------HHHHHHHHHHC---SSCCCEEEEECGGG-------CCCCHHHHHHHHHH
T ss_pred             ---EEEEEeCC---CCC-----cC------HHHHHHHHhcc---cCCceEEEEECCCC-------ChhhHHHHHHHHHH
Confidence               11122210   000     12      56677777642   22578899998655       23568888888864

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=94.62  E-value=0.015  Score=46.15  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=24.7

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+|+++..+...|.+. |.+.+++|.++|++
T Consensus       161 ~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~  192 (391)
T 3h14_A          161 DLAGLMVASPANPTGTML-DHAAMGALIEAAQA  192 (391)
T ss_dssp             CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHH
Confidence            456777777787788754 67789999999974

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=94.52  E-value=0.079  Score=42.14  Aligned_cols=30  Identities=10%  Similarity=-0.072  Sum_probs=24.2

Q ss_pred             CeEE-EEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAG-IVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAA-vI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+ |+++..++.+|.   ....+++|.++|++
T Consensus       140 ~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~  170 (374)
T 2aeu_A          140 KDTLVIITGSTMDLKVI---ELENFKKVINTAKN  170 (374)
T ss_dssp             TTEEEEEECBCTTSCBC---CHHHHHHHHHHHHH
T ss_pred             CccEEEEEccCCCCCCC---CcccHHHHHHHHHH
Confidence            5778 999988877775   56789999999974

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=94.52  E-value=0.26  Score=40.68  Aligned_cols=45  Identities=20%  Similarity=0.116  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.|.+....+..+.+|++.-.....|.+.+    +++|.++|++
T Consensus       229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~  273 (504)
T 2okj_A          229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEK  273 (504)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHH
Confidence            45666666543212235788888766666677643    7889999874

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=94.48  E-value=0.039  Score=42.53  Aligned_cols=40  Identities=8%  Similarity=0.050  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+...     ++.+|+++..+...|.+.+    +++|.++|++
T Consensus       113 ~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~----~~~i~~l~~~  152 (353)
T 2yrr_A          113 PEAVARALKRR-----RYRMVALVHGETSTGVLNP----AEAIGALAKE  152 (353)
T ss_dssp             HHHHHHHHHHS-----CCSEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred             HHHHHHHHHhC-----CCCEEEEEccCCCcceecC----HHHHHHHHHH
Confidence            56677777641     5678899999988888765    6788888874

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=94.36  E-value=0.066  Score=44.28  Aligned_cols=39  Identities=13%  Similarity=0.162  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      +++.+|++|..+...|.+.+    +++|.++|++
T Consensus       207 ~~~l~~~i~------~~tk~v~l~~p~NptG~v~~----l~~i~~la~~  245 (464)
T 1ibj_A          207 LDEVAAAIG------PQTKLVWLESPTNPRQQISD----IRKISEMAHA  245 (464)
T ss_dssp             HHHHHHHCC------SSEEEEEECSSCTTTCCCCC----HHHHHHHHHT
T ss_pred             HHHHHHHhc------cCceEEEEeCCCCCCCEeec----HHHHHHHHHH
Confidence            456666553      46899999999988888763    8999999975

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=94.18  E-value=0.06  Score=41.86  Aligned_cols=40  Identities=13%  Similarity=0.218  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       112 ~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++++.+.     .  ..+++++..+...|.+ .|.+.+++|.++|++
T Consensus       136 ~~l~~~l~-----~--~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~  175 (361)
T 3ftb_A          136 EDIISKID-----D--VDSVIIGNPNNPNGGL-INKEKFIHVLKLAEE  175 (361)
T ss_dssp             HHHHHHTT-----T--CSEEEEETTBTTTTBC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHhcc-----C--CCEEEEeCCCCCCCCC-CCHHHHHHHHHHhhh
Confidence            45555543     2  3344444336666764 577889999999974

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=94.17  E-value=0.076  Score=41.66  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCCC
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIPA   81 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~~   81 (159)
                      ++|+||++.+++...        .                  +|  +.+|+....+||+....+..... .         
T Consensus        82 ~G~~~ai~~~~~~~~--------~------------------~g--~d~Vl~~~p~~~~~~~~~~~~g~-~---------  123 (356)
T 1fg7_A           82 RGADEGIELLIRAFC--------E------------------PG--KDAILYCPPTYGMYSVSAETIGV-E---------  123 (356)
T ss_dssp             SHHHHHHHHHHHHHC--------C------------------TT--TCEEEECSSSCTHHHHHHHHHTC-E---------
T ss_pred             CCHHHHHHHHHHHHh--------C------------------CC--CCEEEEeCCChHHHHHHHHHcCC-E---------
Confidence            567899998887541        1                  23  47899999999998765443221 1         


Q ss_pred             CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          82 FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        82 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                        +..+|...   .+.     .|      ++++++.+.       ++.+|++...+...|.+ .|.+.+++|.++|+
T Consensus       124 --~~~v~~~~---~~~-----~d------~~~l~~~i~-------~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~  176 (356)
T 1fg7_A          124 --CRTVPTLD---NWQ-----LD------LQGISDKLD-------GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR  176 (356)
T ss_dssp             --EEECCCCT---TSC-----CC------HHHHHTSCT-------TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT
T ss_pred             --EEEeeCCC---CCC-----CC------HHHHHHHhc-------CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC
Confidence              01122110   000     12      344444331       46677777777777865 57899999999885

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=94.13  E-value=0.097  Score=41.77  Aligned_cols=46  Identities=7%  Similarity=0.078  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEc-ccccCCCCccCCHHHHHHHHHHhc
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVE-PIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~E-PiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      ++.|++.+..... ....+++|++ |.+.-.|.+ .|.+.+++|.++|+
T Consensus       164 ~~~l~~~l~~~~~-~~~~~~vi~~~p~~NPtG~~-~~~~~l~~l~~~~~  210 (418)
T 3rq1_A          164 HEAFQNRVNELAA-KQTNVVVIFNTPGNNPTGYS-IEDKDWDSILNFLK  210 (418)
T ss_dssp             HHHHHHHHHHHHH-HCSEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc-cCCCEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHH
Confidence            4566666654210 1244577777 547777865 46677999999996

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=94.07  E-value=0.047  Score=43.96  Aligned_cols=48  Identities=8%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhc------cCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYN------KKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~------~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+..+.      ....++.+|++.| .+.-.|.+ .|.+.+++|.++|++
T Consensus       168 ~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~  222 (425)
T 2r2n_A          168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS-LTSERKKEIYELARK  222 (425)
T ss_dssp             HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHH
Confidence            566777775320      0013567888887 55566765 678999999999974

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=93.80  E-value=0.47  Score=38.50  Aligned_cols=45  Identities=11%  Similarity=0.034  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+...   +.....+++...+...|++ ++.+.+++|.++|++
T Consensus       189 ~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~l~~~  233 (448)
T 3meb_A          189 FSNTKKDIQSA---PEKSIFLFHACAHNPSGID-FTEAQWKELLPIMKE  233 (448)
T ss_dssp             HHHHHHHHHHS---CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCcEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHH
Confidence            56677777653   2334455544446666764 678889999999974

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=93.77  E-value=0.0095  Score=47.03  Aligned_cols=37  Identities=8%  Similarity=0.045  Sum_probs=27.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhh
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGC   65 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga   65 (159)
                      ++|||+|++.|++.++.       +                  +   ...||....+|++.....
T Consensus        56 ~~sGt~al~~al~~~~~-------~------------------~---gd~Vi~~~~~~~~~~~~~   92 (367)
T 3nyt_A           56 CANGTDALQIVQMALGV-------G------------------P---GDEVITPGFTYVATAETV   92 (367)
T ss_dssp             ESCHHHHHHHHHHHTTC-------C------------------T---TCEEEEESSSCTHHHHHH
T ss_pred             eCCHHHHHHHHHHHhCC-------C------------------C---cCEEEECCCccHHHHHHH
Confidence            47999999999987631       1                  2   457999998888865544

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=93.61  E-value=0.036  Score=44.21  Aligned_cols=93  Identities=13%  Similarity=0.072  Sum_probs=53.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||++|++.+++.++ .      .                  +   ...||....+||+.. .++...|..        
T Consensus        84 ~~~Gt~a~~~~l~~~~-~------~------------------~---gd~vl~~~~~~~~~~-~~~~~~g~~--------  126 (399)
T 2oga_A           84 VNSGMDALQLALRGLG-I------G------------------P---GDEVIVPSHTYIASW-LAVSATGAT--------  126 (399)
T ss_dssp             ESCHHHHHHHHHHHTT-C------C------------------T---TCEEEEESSSCTHHH-HHHHHTTCE--------
T ss_pred             ecCHHHHHHHHHHHhC-C------C------------------C---cCEEEECCCccHHHH-HHHHHCCCE--------
Confidence            3689999999998662 1      1                  1   457999999999843 444433321        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|....  .+.     .+      +++|++.+.      .++.+|++++..   |.+.+    +++|.++|++
T Consensus       127 ---~~~~~~~~~--~~~-----~d------~~~l~~~i~------~~~~~v~~~n~t---G~~~~----l~~i~~l~~~  176 (399)
T 2oga_A          127 ---PVPVEPHED--HPT-----LD------PLLVEKAIT------PRTRALLPVHLY---GHPAD----MDALRELADR  176 (399)
T ss_dssp             ---EEEECBCSS--SSS-----BC------HHHHHHHCC------TTEEEECCBCGG---GCCCC----HHHHHHHHHH
T ss_pred             ---EEEEecCCC--CCC-----cC------HHHHHHhcC------CCCeEEEEeCCc---CCccC----HHHHHHHHHH
Confidence               111222100  000     12      456665553      257788876554   44432    7889998874

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=93.40  E-value=0.16  Score=40.51  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEccc-ccCCCCccCCHHHHHHHHHHh-cC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPI-QSEGGDNHGSNYFFQQLQKIG-KK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPi-qG~gGv~~pp~~fl~~lr~lc-~~  159 (159)
                      +++|++.+..    ..++.+|+++|. +.-.|.+ .|.+.+++|.++| ++
T Consensus       160 ~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~  205 (423)
T 3ez1_A          160 VDAVERLAGT----DPSVKGILFVPTYSNPGGET-ISLEKARRLAGLQAAA  205 (423)
T ss_dssp             HHHHHHHHHS----CTTEEEEEECSSSCTTTCCC-CCHHHHHHHHTCCCSS
T ss_pred             HHHHHHHHhh----CCCceEEEECCCCCCCCCcC-CCHHHHHHHHHHHHhc
Confidence            5677777752    247889989984 4456765 5677799999998 64

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=92.92  E-value=0.12  Score=40.20  Aligned_cols=41  Identities=7%  Similarity=-0.083  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      ++++++.+.      .++.+|+++..+...|.+. |.+.+++|.++|+
T Consensus       143 ~~~l~~~l~------~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~  183 (365)
T 3get_A          143 FKKLYETHK------DEIKLIFLCLPNNPLGECL-DASEATEFIKGVN  183 (365)
T ss_dssp             HHHHHHHTT------TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSC
T ss_pred             HHHHHHHhC------CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhCC
Confidence            566666653      3678888876666677654 6778888888874

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=92.65  E-value=0.082  Score=41.89  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEE-cccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVV-EPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~-EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+...     ++++||+ +|..+   .. .+   +++|+++|++
T Consensus       158 ~~~l~~~i~~~-----~~~~v~~~~~~~~---~~-~~---l~~l~~l~~~  195 (420)
T 3gbx_A          158 YDEMAKLAKEH-----KPKMIIGGFSAYS---GV-VD---WAKMREIADS  195 (420)
T ss_dssp             HHHHHHHHHHH-----CCSEEEECCTTCC---SC-CC---HHHHHHHHHH
T ss_pred             HHHHHHHHHhc-----CCeEEEEecCccC---Cc-cC---HHHHHHHHHH
Confidence            56777777653     4677788 55543   22 23   8899999974

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=92.46  E-value=0.05  Score=43.81  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.++..   ..++.+|++...+...|++ .|.+.+++|.++|++
T Consensus       193 ~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~  237 (444)
T 3if2_A          193 FEALENLPALK---EGRIGAICCSRPTNPTGNV-LTDEEMAHLAEIAKR  237 (444)
T ss_dssp             HHHHHTCHHHH---TTCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CCCceEEEeCCCCCCCCCc-CCHHHHHHHHHHHHH
Confidence            55666654432   2467777776556777875 567789999999974

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=92.24  E-value=0.16  Score=40.89  Aligned_cols=30  Identities=7%  Similarity=-0.079  Sum_probs=24.8

Q ss_pred             CCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         126 TPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       126 ~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++.+|++|..+...|.+.+    +++|.++|++
T Consensus       146 ~~t~~v~l~~p~NptG~v~~----l~~i~~la~~  175 (404)
T 1e5e_A          146 PNTKIVYFETPANPTLKIID----MERVCKDAHS  175 (404)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCCcccC----HHHHHHHHHh
Confidence            36889999998888888764    8999999975

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=91.35  E-value=0.13  Score=40.60  Aligned_cols=44  Identities=11%  Similarity=-0.032  Sum_probs=29.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhh
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCL   66 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~   66 (159)
                      ++|||+|++.|++.++.+. ..  +.                  + ++.+||....+||+......
T Consensus        55 ~~sGt~a~~~al~~~~~~~-~~--~~------------------~-~g~~Vi~~~~~~~~~~~~~~   98 (390)
T 3b8x_A           55 VSSGSTANLLMIAALFFTK-KP--RL------------------K-KGDEIIVPAVSWSTTYYPLQ   98 (390)
T ss_dssp             ESCHHHHHHHHHHHTTSSS-SC--SC------------------C-TTCEEEEESSSCHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHhhh-hc--CC------------------C-CcCEEEECCCCcHHHHHHHH
Confidence            3689999999998764210 00  10                  1 14689999999998876443

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=91.19  E-value=0.092  Score=41.34  Aligned_cols=93  Identities=9%  Similarity=0.077  Sum_probs=54.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||++|++.+++..+ .      .                  +   ...|+....+|++.. .++...|..        
T Consensus        60 ~~~gt~al~~~~~~~~-~------~------------------~---gd~Vl~~~~~~~~~~-~~~~~~g~~--------  102 (393)
T 1mdo_A           60 VSSATAGMHIALMALG-I------G------------------E---GDEVITPSMTWVSTL-NMIVLLGAN--------  102 (393)
T ss_dssp             ESCHHHHHHHHHHHTT-C------C------------------T---TCEEEEESSSCHHHH-HHHHHTTCE--------
T ss_pred             ecChHHHHHHHHHHcC-C------C------------------C---CCEEEeCCCccHhHH-HHHHHCCCE--------
Confidence            3689999999998652 1      1                  2   457999999998864 333333321        


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                         +..+|....  .+  .   .+      +++|++.+.      .++.+|++.+..|.   +. +   +++|.++|++
T Consensus       103 ---~~~v~~~~~--~~--~---~d------~~~l~~~l~------~~~~~v~~~~~~G~---~~-~---~~~i~~l~~~  152 (393)
T 1mdo_A          103 ---PVMVDVDRD--TL--M---VT------PEHIEAAIT------PQTKAIIPVHYAGA---PA-D---LDAIYALGER  152 (393)
T ss_dssp             ---EEEECBCTT--TC--C---BC------HHHHHHHCC------TTEEEECCBCGGGC---CC-C---HHHHHHHHHH
T ss_pred             ---EEEEeccCC--cC--C---CC------HHHHHHhcC------CCceEEEEeCCCCC---cC-C---HHHHHHHHHH
Confidence               111222100  00  0   12      456666553      26788998886543   32 2   7888888864

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=90.78  E-value=0.55  Score=37.24  Aligned_cols=45  Identities=16%  Similarity=0.088  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+...   ......+++..-+.-.|. ..+.+.+++|.++|++
T Consensus       170 ~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~-~~~~~~l~~i~~~~~~  214 (409)
T 4eu1_A          170 LAGMLECLDKA---PEGSVILVHACAHNPTGV-DPTHDDWRQVCDVIKR  214 (409)
T ss_dssp             HHHHHHHHHHS---CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHh
Confidence            56777777653   234455554333555565 4577889999999974

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=90.65  E-value=1.1  Score=36.85  Aligned_cols=19  Identities=16%  Similarity=-0.393  Sum_probs=16.6

Q ss_pred             CCcchHHHHHHHHHHHHHH
Q psy4805           2 MCGSCSNENAYKNIFIWYQ   20 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~   20 (159)
                      ++||+||..||..||....
T Consensus       152 ~ggt~an~~al~~ar~~~~  170 (481)
T 4e1o_A          152 STVSESTLIALLAARKNKI  170 (481)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHH
Confidence            5799999999999998754

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=90.58  E-value=0.046  Score=42.26  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccc
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRT   62 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T   62 (159)
                      +++|++|++.+++...        .                  +   ..+||....+||+..
T Consensus        57 ~~g~t~a~~~~~~~~~--------~------------------~---gd~vl~~~~~~~~~~   89 (352)
T 1iug_A           57 TGSGTLAMEALVKNLF--------A------------------P---GERVLVPVYGKFSER   89 (352)
T ss_dssp             ESCHHHHHHHHHHHHC--------C------------------T---TCEEEEEECSHHHHH
T ss_pred             cCchHHHHHHHHHhcc--------C------------------C---CCeEEEEeCCchhHH
Confidence            3689999999998651        1                  2   357999999999975

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=90.28  E-value=0.061  Score=42.00  Aligned_cols=39  Identities=10%  Similarity=0.069  Sum_probs=28.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhh
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGC   65 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga   65 (159)
                      ++||++|++.|++.++.+  .   .                  +   ..+||....+||+.....
T Consensus        53 ~~ggt~al~~~~~~~~~~--~---~------------------~---gd~Vl~~~~~~~~~~~~~   91 (375)
T 2fnu_A           53 FNSATSALLTLYRNFSEF--S---A------------------D---RNEIITTPISFVATANML   91 (375)
T ss_dssp             ESCHHHHHHHHHHHSSCC--C---T------------------T---SCEEEECSSSCTHHHHHH
T ss_pred             eCCHHHHHHHHHHHhccc--C---C------------------C---CCEEEECCCccHhHHHHH
Confidence            478999999999876321  0   0                  2   458999999999876543

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=90.05  E-value=0.81  Score=36.01  Aligned_cols=45  Identities=13%  Similarity=0.103  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.++..   ..+...+++...+.-.|.+ .+.+.+++|.++|++
T Consensus       162 ~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~-~~~~~l~~i~~~~~~  206 (401)
T 7aat_A          162 FTGAMEDISKI---PEKSIILLHACAHNPTGVD-PRQEQWKELASVVKK  206 (401)
T ss_dssp             HHHHHHHHTTS---CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHh
Confidence            34455555442   2456777887777777764 678899999999864

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=89.53  E-value=2.2  Score=35.30  Aligned_cols=45  Identities=20%  Similarity=0.116  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .++|++.|.+....+..+.+|++.-.....|.+.+    +++|.++|++
T Consensus       232 ~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~  276 (511)
T 3vp6_A          232 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEK  276 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHH
Confidence            56677777653212234678888777767777643    7888888874

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=88.66  E-value=0.055  Score=42.81  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=28.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhh
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLS   67 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s   67 (159)
                      ++|||+|++.|++.++.       .                  +   +.+||....+||+.......
T Consensus        77 ~~~gt~al~~~l~~~~~-------~------------------~---gd~vl~~~~~~~~~~~~~~~  115 (391)
T 3dr4_A           77 CNNGTTALHLALVAMGI-------G------------------P---GDEVIVPSLTYIASANSVTY  115 (391)
T ss_dssp             ESSHHHHHHHHHHHHTC-------C------------------T---TCEEEEESSSCTHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHcCC-------C------------------C---cCEEEECCCchHHHHHHHHH
Confidence            37899999999987621       1                  1   46899999999998655443

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=87.84  E-value=0.2  Score=39.47  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=26.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhh
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGC   65 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga   65 (159)
                      +||++|++.|++..+.       .                  +   ..+||....+||+.....
T Consensus        60 ~sGt~al~~~l~~l~~-------~------------------~---gd~Vi~~~~~~~~~~~~~   95 (388)
T 1b9h_A           60 TNGTHALELALQVMGV-------G------------------P---GTEVIVPAFTFISSSQAA   95 (388)
T ss_dssp             SCHHHHHHHHHHHTTC-------C------------------T---TCEEEEESSSCTHHHHHH
T ss_pred             CCHHHHHHHHHHHcCC-------C------------------C---cCEEEECCCccHHHHHHH
Confidence            6899999999986520       1                  2   357999999999886543

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=87.57  E-value=0.57  Score=36.78  Aligned_cols=37  Identities=14%  Similarity=0.080  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+...     ++.+||+.| ..   |.    ...+++|.++|++
T Consensus       152 ~~~l~~~i~~~-----~~~~v~~~~~~~---~~----~~~l~~i~~l~~~  189 (405)
T 2vi8_A          152 YDDVREKARLH-----RPKLIVAAAAAY---PR----IIDFAKFREIADE  189 (405)
T ss_dssp             HHHHHHHHHHH-----CCSEEEECCSSC---CS----CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-----CCeEEEEeCCCC---Cc----cCCHHHHHHHHHH
Confidence            56677777642     346777754 32   22    2238999999974

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=86.61  E-value=0.11  Score=40.63  Aligned_cols=37  Identities=14%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhh
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGC   65 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga   65 (159)
                      ++||++|++.|++.++.       .                  +   ..+|+....+||+.....
T Consensus        59 ~~~gt~a~~~~~~~~~~-------~------------------~---gd~v~~~~~~~~~~~~~~   95 (374)
T 3uwc_A           59 VGTGTDALAMSFKMLNI-------G------------------A---GDEVITCANTFIASVGAI   95 (374)
T ss_dssp             ESCHHHHHHHHHHHTTC-------C------------------T---TCEEEEESSSCHHHHHHH
T ss_pred             eCCHHHHHHHHHHHcCC-------C------------------C---CCEEEECCCccHHHHHHH
Confidence            36899999999986521       1                  2   468999999999876443

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=86.06  E-value=1.9  Score=35.59  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.|++.+......+.++.+|++.-.+.-.|.+ .+.+-+++|.++|++
T Consensus       221 ~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~-~s~~~l~~i~~la~~  268 (500)
T 3tcm_A          221 TSDVKKQLEDARSRGINVRALVVINPGNPTGQV-LAEENQYDIVKFCKN  268 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECCCCCCccc-CCHHHHHHHHHHHHH
Confidence            556666665432112356666666445556754 567889999999874

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=84.96  E-value=1.8  Score=34.39  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcc-cccCCCCccCCHHHHHHHHHHh-cC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEP-IQSEGGDNHGSNYFFQQLQKIG-KK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EP-iqG~gGv~~pp~~fl~~lr~lc-~~  159 (159)
                      +++|++.+.     ..++.+|++.| .+.-.|.+. |.+.+++|.++| ++
T Consensus       169 ~~~l~~~l~-----~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~  213 (427)
T 3ppl_A          169 MDAVEELVK-----NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAA  213 (427)
T ss_dssp             HHHHHHHTT-----STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSS
T ss_pred             HHHHHHHHh-----cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhc
Confidence            566666663     24788899898 455577654 667799999998 64

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=84.28  E-value=3.2  Score=33.52  Aligned_cols=39  Identities=8%  Similarity=0.005  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcc----cccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEP----IQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EP----iqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++++++.+.      ++..+|++|.    .....|.+    .-+++|.++|++
T Consensus       149 ~e~l~~ai~------~~tklV~i~~s~g~p~nptg~v----~~l~~I~~la~~  191 (409)
T 3jzl_A          149 FPRIAKKMT------PKTKMIGIQRSRGYADRPSFTI----EKIKEMIVFVKN  191 (409)
T ss_dssp             HHHHHHHCC------TTEEEEEEECSCTTSSSCCCCH----HHHHHHHHHHHH
T ss_pred             HHHHHHhcc------CCCeEEEEECCCCCCCCCcCcc----ccHHHHHHHHHh
Confidence            456665553      3678899998    44444433    457888888863

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=83.72  E-value=0.24  Score=39.52  Aligned_cols=36  Identities=14%  Similarity=0.071  Sum_probs=26.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhh
Q psy4805           2 MCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGC   65 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga   65 (159)
                      +||++|++.|++..+.       .                  +   ...||....+||+.....
T Consensus        64 ~~gt~al~~~~~~~~~-------~------------------~---gd~Vl~~~~~~~~~~~~~   99 (418)
T 2c81_A           64 TSGSTALMLALEALGI-------G------------------E---GDEVIVPSLTWIATATAV   99 (418)
T ss_dssp             SCHHHHHHHHHHHTTC-------C------------------T---TCEEEEESSSCTHHHHHH
T ss_pred             CCHHHHHHHHHHHcCC-------C------------------C---cCEEEECCCccHhHHHHH
Confidence            6899999999986521       1                  2   357999999999886544

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=83.66  E-value=0.31  Score=39.53  Aligned_cols=29  Identities=10%  Similarity=0.007  Sum_probs=19.7

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +..+|++|......|.+.+    +++|.++|++
T Consensus       167 ~tklV~~e~~~NptG~v~d----l~~I~~la~~  195 (415)
T 2fq6_A          167 NTKIVFLESPGSITMEVHD----VPAIVAAVRS  195 (415)
T ss_dssp             TEEEEEEESSCTTTCCCCC----HHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCCEeec----HHHHHHHHHh
Confidence            4677778877776676653    5677777753

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=83.62  E-value=3.8  Score=33.53  Aligned_cols=19  Identities=16%  Similarity=-0.312  Sum_probs=16.7

Q ss_pred             CCcchHHHHHHHHHHHHHH
Q psy4805           2 MCGSCSNENAYKNIFIWYQ   20 (159)
Q Consensus         2 ~sGseA~e~AlklA~~~~~   20 (159)
                      ++||+||-.|+..||.+..
T Consensus       146 ~ggt~anl~al~~ar~~~~  164 (475)
T 3k40_A          146 GTASESTLVALLGAKAKKL  164 (475)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHH
Confidence            6899999999999998753

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=81.95  E-value=0.84  Score=36.43  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=22.5

Q ss_pred             CeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         127 PVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       127 ~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+||++..+.-.|.+ ++.+.+++|.++|++
T Consensus       198 ~~~~v~l~~p~NPtG~~-~~~~~l~~l~~la~~  229 (432)
T 3ei9_A          198 RTDIIFFCSPNNPTGAA-ATREQLTQLVEFAKK  229 (432)
T ss_dssp             CCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCCCC-CCHHHHHHHHHHHHH
Confidence            45566666556666764 567789999999863

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=81.50  E-value=0.69  Score=36.92  Aligned_cols=34  Identities=3%  Similarity=-0.161  Sum_probs=26.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchh
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLG   64 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~g   64 (159)
                      +++|++|++.+++...                           +   ...||....+||+....
T Consensus        73 ~~ggt~al~~~l~~l~---------------------------~---gd~Vlv~~~~~~~~~~~  106 (424)
T 2po3_A           73 TCNATAGLQLLAHAAG---------------------------L---TGEVIMPSMTFAATPHA  106 (424)
T ss_dssp             ESCHHHHHHHHHHHHT---------------------------C---CSEEEEESSSCTHHHHH
T ss_pred             eCCHHHHHHHHHHHcC---------------------------C---CCEEEECCCccHHHHHH
Confidence            4789999999998652                           1   25799999999987653

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=81.28  E-value=3.7  Score=33.01  Aligned_cols=19  Identities=5%  Similarity=-0.198  Sum_probs=15.7

Q ss_pred             CCCcchHHHHHHHHHHHHH
Q psy4805           1 MMCGSCSNENAYKNIFIWY   19 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~   19 (159)
                      +++||||+..|++.++..+
T Consensus       109 t~ggtea~~~al~a~~~~~  127 (452)
T 2dgk_A          109 TIGSSEACMLGGMAMKWRW  127 (452)
T ss_dssp             ESSHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHH
Confidence            3689999999999887643

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=80.33  E-value=1.1  Score=35.27  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEE-cccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVV-EPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~-EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.+.      .++.+|++ .| +.-.|.+ .|++.+++|.++|++
T Consensus       154 ~~~l~~~l~------~~~~~v~~~~p-~NPtG~~-~~~~~l~~i~~~~~~  195 (385)
T 1b5p_A          154 PERVRRAIT------PRTKALVVNSP-NNPTGAV-YPKEVLEALARLAVE  195 (385)
T ss_dssp             HHHHHTTCC------TTEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC------CCCEEEEEeCC-CCCCCCC-cCHHHHHHHHHHHHH
Confidence            455555442      24555555 55 3344543 478999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	2e-11
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	8e-07
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	2e-05
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-04

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           I+ F+G +HG     L    S  +  + +P+                 N           
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSG-VATLGLPSSPGVPKKTTANTLTTPYN----------D 185

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           L  V+ L  +   +   +AG+++EPI    G       F + L++I  +
Sbjct: 186 LEAVKALFAENPGE---IAGVILEPIVGNSGFIVPDAGFLEGLREITLE 231

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 45.1 bits (106), Expect = 8e-07
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 26/146 (17%)

Query: 14  NIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKY 73
            I     N+     SG   E  E+++            ++    F GRT+G LS T    
Sbjct: 90  AILPPELNRVFPVNSGT--EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPK 147

Query: 74  IHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVV 133
             +  +P  +      P    P  + E   +A DE+                   A +++
Sbjct: 148 YREPFLPLVE------PVEFIPYNDVEALKRAVDEE------------------TAAVIL 183

Query: 134 EPIQSEGGDNHGSNYFFQQLQKIGKK 159
           EP+Q EGG    +  F +  ++I ++
Sbjct: 184 EPVQGEGGVRPATPEFLRAAREITQE 209

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 90  PKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYF 149
           P                    L  +E  +   N     VA  +VEPIQ E G       +
Sbjct: 156 PTSYDGFGPFMPGFDIIPYNDLPALERALQDPN-----VAAFMVEPIQGEAGVVVPDPGY 210

Query: 150 FQQLQKIGKK 159
              ++++  +
Sbjct: 211 LMGVRELCTR 220

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 128 VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           V   +VEPIQ E G    S+ + Q +  I KK
Sbjct: 187 VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.97
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.95
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.94
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.94
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.93
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.93
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.92
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.85
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.1
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.05
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	96.79
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	96.76
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	96.32
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	95.38
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	93.97
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	92.27
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	91.78
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	86.27
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	84.72

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=7.3e-31  Score=218.13  Aligned_cols=158  Identities=70%  Similarity=1.215  Sum_probs=115.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||+|+..+.++. +.++++..........++..|.+||+|++||||+|++++++|+++.++..+.+
T Consensus       123 ~~sGseAve~Aik~Ar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~  201 (461)
T d1ohwa_         123 MACGSCSNENAFKTIFMWYRSKERGQ-SAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIP  201 (461)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCC
T ss_pred             ecchhhhhHHHHHHHHHHhhhcccCc-ccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCccccccccc
Confidence            48999999999999999987763332 23333333334444444444889999999999999999999998776666666


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .......|++...+|.......++.....+++++++++......+++|||||+|||||++|+++||++||++||++|+|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~  280 (461)
T d1ohwa_         202 SFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK  280 (461)
T ss_dssp             CCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH
T ss_pred             ccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHh
Confidence            5555566665544444322222333445567777777765433468999999999999999999999999999999985

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.95  E-value=7.6e-28  Score=197.99  Aligned_cols=126  Identities=25%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||+|+                         |  |.+|++|+++|||+|.+++++++...+. .+.+
T Consensus       106 ~~sGseA~e~Alk~Ar~~t-------------------------~--r~~i~~~~~~yHG~t~~~~~~~~~~~~~-~~~~  157 (431)
T d1zoda1         106 LSTGAESNEAAIRMAKLVT-------------------------G--KYEIVGFAQSWHGMTGAAASATYSAGRK-GVGP  157 (431)
T ss_dssp             ESCHHHHHHHHHHHHHHHH-------------------------T--CCEEEEETTCCCCSSHHHHHTCCSSCCS-SSCC
T ss_pred             cccccchHHHHHHHHHHhc-------------------------C--Ccceeecccccccccchhhccccccccc-ccCC
Confidence            5899999999999999995                         4  8899999999999999999999865432 2333


Q ss_pred             C-CCCCcccCCC-CCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 A-FDWPIASFPK-YKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~-~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      . .++..++.|. ++.+....   .......+++.+...+...  .+++|||||+|||||++|+++||++||++||++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~  232 (431)
T d1zoda1         158 AAVGSFAIPAPFTYRPRFERN---GAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE  232 (431)
T ss_dssp             CCTTEEEECCCCTTSCCCEET---TEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred             cccCceeeeeecccccccccc---cchhhhhhHHHHHHHHHHh--ccccccceeeccccccCCccCCCHHHHHHHHHHHH
Confidence            2 3444455543 22222111   1112223355555555544  26799999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       233 ~  233 (431)
T d1zoda1         233 A  233 (431)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2e-27  Score=193.35  Aligned_cols=107  Identities=23%  Similarity=0.359  Sum_probs=86.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|||+||.|+                         +  |.+||+|+++|||+|++++++|+.+.++..+.|
T Consensus       102 ~~sGseA~e~Aik~Ar~~t-------------------------~--r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p  154 (387)
T d1vefa1         102 VNSGTEANEAALKFARAHT-------------------------G--RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLP  154 (387)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------S--CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCS
T ss_pred             ccCchHHHHHHHHHHHhhc-------------------------c--cceecccccCCCCCccceEeccCCccccCCCCC
Confidence            4899999999999999995                         4  789999999999999999999997765555444


Q ss_pred             CCC-CCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFD-WPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~-~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ... ..++             +++|      ++.|++.+      .++|||||+|||||++|++++|++||++||++|+|
T Consensus       155 ~~~~~~~~-------------p~~d------~~~l~~~~------~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~  209 (387)
T d1vefa1         155 LVEPVEFI-------------PYND------VEALKRAV------DEETAAVILEPVQGEGGVRPATPEFLRAAREITQE  209 (387)
T ss_dssp             CSSCEEEE-------------CTTC------HHHHHHHC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred             CCCCceEe-------------CCCC------HHHHHHhc------CCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHH
Confidence            321 1112             2344      55666655      35899999999999999999999999999999985

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.94  E-value=9.9e-28  Score=197.33  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=88.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||.|+                         |  |++||+|+++|||+|.++++++++...+..+ |
T Consensus       114 ~~sGseA~e~Alk~ar~~t-------------------------~--r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~-p  165 (427)
T d2gsaa_         114 VNSGTEACMAVLRLMRAYT-------------------------G--RDKIIKFEGCYHGHADMFLVKAGSGVATLGL-P  165 (427)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------C--CCEEEEETTCCCCSCGGGCSSCCHHHHHTTC-C
T ss_pred             cCCcHHHHHHHHHHHHHhc-------------------------C--CCeEEEEecccccCcceeeeecCCcccccCC-C
Confidence            4799999999999999995                         4  8899999999999999999999865332211 1


Q ss_pred             C-CCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 A-FDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      . ......+.+.     ....++++      ++++++++++.   +++|||||+|||||++|+++||++||++||+||+|
T Consensus       166 ~~~~~~~~~~~~-----~~~~~~~~------~~~le~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~  231 (427)
T d2gsaa_         166 SSPGVPKKTTAN-----TLTTPYND------LEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLE  231 (427)
T ss_dssp             SCSSSCHHHHTT-----EEEECTTC------HHHHHHHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHH
T ss_pred             CCCCCcccCccc-----eeccCcch------HHHHHHHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHH
Confidence            1 1111111111     11112334      78888888875   67999999999999999999999999999999985

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.7e-26  Score=186.56  Aligned_cols=126  Identities=21%  Similarity=0.378  Sum_probs=91.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||.|+|+||+|+.++  |.                  +  +.+||+|+++|||+|++++++++...++..+.+
T Consensus       109 ~~sGseA~e~A~k~ar~~~~~~--g~------------------~--~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~  166 (429)
T d1s0aa_         109 ADSGSVAVEVAMKMALQYWQAK--GE------------------A--RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK  166 (429)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHH--TC------------------C--CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred             ccccccchhhhhhhhhheeecc--cc------------------c--ccEEEEecCCccccchhhhhhcCCccccccccC
Confidence            4899999999999999999877  42                  2  779999999999999999999987654443322


Q ss_pred             CC--CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccc-cCCCCccCCHHHHHHHHHHh
Q psy4805          81 AF--DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQ-SEGGDNHGSNYFFQQLQKIG  157 (159)
Q Consensus        81 ~~--~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiq-G~gGv~~pp~~fl~~lr~lc  157 (159)
                      ..  .....|.+...  ......+++      ++.+++.+...   +++|||||+||+| ++||+++||++||++||++|
T Consensus       167 ~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~---~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc  235 (429)
T d1s0aa_         167 GYLPENLFAPAPQSR--MDGEWDERD------MVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC  235 (429)
T ss_dssp             TTSCCCEEECCCCSB--C-CCCCGGG------GHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHH
T ss_pred             ccccccccccccccc--cccccchhh------hhhhhhhhhhc---CCccceeeecceeccCCCccCCCHHHHHHHHHHH
Confidence            21  12222222111  110111112      55666666665   6899999999987 78889999999999999999


Q ss_pred             cC
Q psy4805         158 KK  159 (159)
Q Consensus       158 ~~  159 (159)
                      +|
T Consensus       236 ~~  237 (429)
T d1s0aa_         236 DR  237 (429)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.9e-26  Score=185.32  Aligned_cols=122  Identities=25%  Similarity=0.314  Sum_probs=83.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||.|+                         +  |.+||+|+++|||+|.+++++|+....+..+.+
T Consensus       107 ~~sGseA~e~Alk~ar~~t-------------------------~--r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~  159 (425)
T d1sffa_         107 VTTGSEAVENAVKIARAAT-------------------------K--RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  159 (425)
T ss_dssp             ESSHHHHHHHHHHHHHHHH-------------------------T--CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             eccccchhhhHHHHhhhhh-------------------------c--ccceEeecCCCcCccccchhhcCCCCcccCCcc
Confidence            4899999999999999996                         4  789999999999999999999987654443332


Q ss_pred             CCCCC--cccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805          81 AFDWP--IASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus        81 ~~~~~--~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .....  ..++|     ....    +..........++++... ...++|||||+|||||++|+++||++||+.||++|+
T Consensus       160 ~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~-~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~  229 (425)
T d1sffa_         160 LMPGHVYRALYP-----CPLH----GISEDDAIASIHRIFKND-AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCD  229 (425)
T ss_dssp             CCCSSEEEECCC-----BGGG----TBCHHHHHHHHHHHHHHT-CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHH
T ss_pred             cccCCccccCCc-----cccc----cccchhhHHHHHHHHHhc-ccccceEEEEecCccCCCCcccCCHHHHHHHHHHHH
Confidence            21111  11111     1100    000001111122222221 235799999999999999999999999999999998


Q ss_pred             C
Q psy4805         159 K  159 (159)
Q Consensus       159 ~  159 (159)
                      |
T Consensus       230 ~  230 (425)
T d1sffa_         230 E  230 (425)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=181.90  Aligned_cols=116  Identities=24%  Similarity=0.261  Sum_probs=91.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||||+|||+||+|+.+.+...                 ++  |.+|+++.++|||+|.++++.++.+.++..+.|
T Consensus       104 ~~sGseA~e~Aik~ar~~~~~~~~~~-----------------~~--~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p  164 (404)
T d2byla1         104 MNTGVEAGETACKLARKWGYTVKGIQ-----------------KY--KAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGP  164 (404)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTTCCC-----------------TT--CCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCS
T ss_pred             ccCccccchhHHHHHHHHhhhccccc-----------------cc--cccccccCCCccccccceeccCCCcccccCCCC
Confidence            48999999999999999986652111                 23  789999999999999999999987765554443


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. ++..+|             ++|      ++++++.++     .++|||||+|||||++|+++||++||++||++|+|
T Consensus       165 ~~~~~~~~p-------------~~d------~~~l~~~l~-----~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~  220 (404)
T d2byla1         165 FMPGFDIIP-------------YND------LPALERALQ-----DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR  220 (404)
T ss_dssp             CCTTEEEEC-------------TTC------HHHHHHHHT-----STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             CCCCeeEec-------------ccC------HHHHHHhcC-----CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHh
Confidence            32 111122             234      667777774     35899999999999999999999999999999985

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.85  E-value=6e-22  Score=161.42  Aligned_cols=116  Identities=31%  Similarity=0.412  Sum_probs=69.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++|||||+|+|+|+||+++..+..+.                 +  .+.+|+++.++|||.|.+++++++...++..+.|
T Consensus       102 ~~sgs~a~~~a~k~ar~~~~~~~~~~-----------------~--~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~  162 (404)
T d1z7da1         102 MNTGAEANETAYKLCRKWGYEVKKIP-----------------E--NMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGP  162 (404)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTSCCC-----------------T--TCCEEEEETTC-----------------------
T ss_pred             eccccchHHHHHHHHHHHHhhccccc-----------------c--cccccccccccCCCCcccccccccccccccCCCC
Confidence            47999999999999999987653221                 2  2778999999999999999999876654443322


Q ss_pred             CC-CCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AF-DWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~-~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .. .+..       .|      +++      .+.++..+.     .++|||||+|||||++|+++||++||++||++|+|
T Consensus       163 ~~~~~~~-------~~------~~~------~~~l~~~~~-----~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~  218 (404)
T d1z7da1         163 FAPQFSK-------VP------YDD------LEALEEELK-----DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK  218 (404)
T ss_dssp             ---CEEE-------EC------TTC------HHHHHHHHT-----STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred             CCccccc-------cc------cch------HHHHHHHhc-----CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHH
Confidence            11 1111       11      122      344444442     46999999999999999999999999999999985

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.10  E-value=7.3e-11  Score=95.92  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=75.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcC-CCccccccCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTT-HSKYIHKIDI   79 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s-~~~~~~~~~~   79 (159)
                      ++|||+|+++|+|+++++....  +.                  +  +..++.  ..||+.|..+.... |.... ....
T Consensus        96 ~~sGt~A~~~a~~~~~~~g~~~--~~------------------~--~~~~i~--~~~h~~t~~~~~~~~g~~~~-~~~~  150 (465)
T d1ax4a_          96 AHQGRGAENILFPVLLKYKQKE--GK------------------A--KNPVFI--SNFHFDTTAAHVELNGCKAI-NIVT  150 (465)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHT--TC------------------C--SSCEEE--ESSCCHHHHHHHHHTTCEEE-ECBC
T ss_pred             CCCcHHHHHHHHHHHHHHHHhc--CC------------------C--CCeEEe--ccchhhhhHHHHHHcCCeee-cccc
Confidence            4799999999999999997665  22                  1  233332  47888887765443 32110 0000


Q ss_pred             CCCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          80 PAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        80 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      + .  ...+.+.  .+....   .|      ++++++.|....  .+.++++++||+++.+|..++|.+||++|+++|++
T Consensus       151 ~-~--~~~~~~~--~~~~~~---~d------~~~l~~~i~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~  214 (465)
T d1ax4a_         151 E-K--AFDSETY--DDWKGD---FD------IKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ  214 (465)
T ss_dssp             G-G--GGCTTSC--CTTTTC---BC------HHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred             c-c--cCCCCCC--CCccCc---cC------HHHHHHHHHhhc--cccccceeeccccccCceecCCHHHHHHHHHHHHH
Confidence            0 0  0000000  011000   12      677888887753  46789999999999999999999999999999985

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.3e-10  Score=94.72  Aligned_cols=121  Identities=16%  Similarity=0.131  Sum_probs=84.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhhhccCCCCCCceEEEEcCCCCccchhhhhcCCCccccccCCC
Q psy4805           1 MMCGSCSNENAYKNIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKYIHKIDIP   80 (159)
Q Consensus         1 ~~sGseA~e~AlklA~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~r~~Ii~~~~sYHG~T~ga~s~s~~~~~~~~~~~   80 (159)
                      ++||++||++|+++++++..... .                  +.  +..++.+.+.||+.|.+++.++|.....- ...
T Consensus        95 ~~sGt~A~~~a~~~~~~~g~~~~-~------------------~~--~~~~i~~~~~~~~~~~~~~~~~G~~~~~~-~~~  152 (467)
T d2v1pa1          95 THQGRGAEQIYIPVLIKKREQEK-G------------------LD--RSKMVAFSNYFFDTTQGHSQINGCTVRNV-YIK  152 (467)
T ss_dssp             ECSSTTTHHHHHHHHHHHHHHHH-C------------------CC--TTTCEEEESSCCHHHHHHHHHTTCEEEEC-BCT
T ss_pred             CCCCHHHHHHHHHHHhhccceEe-c------------------CC--CCcEEEEecccccccHHHHHHcCCeeeec-ccc
Confidence            47999999999999999875441 1                  12  67789999999999999999887532110 000


Q ss_pred             CCCCCcccCCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805          81 AFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus        81 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .   ...+...  .+..   ...|      ++.|++.+....  +..++++++|++++.+|..+++.++|++|+++|++
T Consensus       153 ~---~~~~~~~--~~~~---~~~d------~~~l~~~i~~~~--~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~  215 (467)
T d2v1pa1         153 E---AFDTGVR--YDFK---GNFD------LEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK  215 (467)
T ss_dssp             T---TTCTTSC--CTTT---TCBC------HHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred             c---ccccccc--cccc---cCCC------HHHHHHHHhhcC--ccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence            0   0000000  0110   0123      677888887763  45789999999999998899999999999999985

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.001  Score=52.30  Aligned_cols=31  Identities=16%  Similarity=0.136  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         125 GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       125 ~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +.....+++|+|.+..|-+.    +|+++++||++
T Consensus       175 ~~~~~liv~egv~s~~G~~~----~L~~l~~L~~~  205 (401)
T d1fc4a_         175 GARHVLIATDGVFSMDGVIA----NLKGVCDLADK  205 (401)
T ss_dssp             TCSSEEEEEESEETTTTEEC----CHHHHHHHHHH
T ss_pred             ccCceEEEEcCCCCCCCchh----hhhHHHHHHhh
Confidence            45678999999998777544    39999999974

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.00025  Score=52.56  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         125 GTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       125 ~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ...+..+++++.+.+.|...+|.+++++|+++|++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~  160 (343)
T d1m6sa_         126 FPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKE  160 (343)
T ss_dssp             SCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCceecCHHHHHHHHHHHHh
Confidence            35678888888888888888999999999999974

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=96.32  E-value=0.00031  Score=51.88  Aligned_cols=49  Identities=6%  Similarity=-0.057  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.+...........++++++++.+.+....+..+++++.++|++
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  166 (345)
T d1v72a1         118 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS  166 (345)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHh
Confidence            3445555443221234567888888888877788899999999999974

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=95.38  E-value=0.032  Score=44.16  Aligned_cols=47  Identities=15%  Similarity=0.171  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.|++.|....  ...++.+++|-....+|-.+.+.+++++++++|++
T Consensus       160 ~~~le~~I~~~~--~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~  206 (456)
T d1c7ga_         160 LNKLATLIKEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVHEMAST  206 (456)
T ss_dssp             HHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcC--CccceeEEeeecccccccceecHHHHHHHHHHHHH
Confidence            677888888763  46789999997666666678899999999999985

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.089  Score=40.44  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhc
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGK  158 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~  158 (159)
                      .+++++.+...   ..+-..|++|.+.+..|-+.|    +++|.++|+
T Consensus       154 ~~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~  194 (383)
T d1bs0a_         154 VTHLARLLASP---CPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQ  194 (383)
T ss_dssp             HHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC----HHHHHHHHH
T ss_pred             HHHHHHHhccc---CCCceEEEecCCCCCCCcccc----hhHHHHHHH
Confidence            56677777654   345678999999987776654    555666665

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.27  E-value=0.17  Score=38.99  Aligned_cols=43  Identities=14%  Similarity=0.061  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.|.+..  ...+++|++.......|.+.+    +++|.++|++
T Consensus       180 ~~~l~~~i~~~~--~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~  222 (445)
T d3bc8a1         180 LKAVEAKIQELG--PEHILCLHSTTACFAPRVPDR----LEELAVICAN  222 (445)
T ss_dssp             HHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHhcc--ccCeEEEEEeCCCCCCeeehh----HHHHHHHHHH
Confidence            567888887753  346889998876666677654    8888888874

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.78  E-value=0.63  Score=34.09  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      ++.+++.+++..+ ...+..|+++-+....|.+.+    +++|.++|++
T Consensus       125 ~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~----l~~I~~ia~~  168 (364)
T d2e7ja1         125 PENFAQTIEETKK-RGEVVLALITYPDGNYGNLPD----VKKIAKVCSE  168 (364)
T ss_dssp             HHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCC----HHHHHHHHHT
T ss_pred             HHHHHhhhhhhcc-cCCceEEEeecCCCCCceeec----chhheecccc
Confidence            5667777766532 346778888877777787655    7889999875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=86.27  E-value=0.94  Score=34.44  Aligned_cols=44  Identities=11%  Similarity=0.094  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      +++|++.|+++.. .+.+++|++.......|.+.+    +++|.++|++
T Consensus       196 ~~~l~~~i~~~~~-~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~  239 (434)
T d2z67a1         196 VEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDD----IVEIAKICEN  239 (434)
T ss_dssp             HHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh-cCCceEEEeccCcCCCccccC----HHHHHHHHHH
Confidence            5677777776432 246778888765555666543    7888888864

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.72  E-value=1  Score=35.35  Aligned_cols=45  Identities=7%  Similarity=0.022  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhccCCCCeEEEEEcccccCCCCccCCHHHHHHHHHHhcC
Q psy4805         111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK  159 (159)
Q Consensus       111 ~~~le~~i~~~~~~~~~vAAvI~EPiqG~gGv~~pp~~fl~~lr~lc~~  159 (159)
                      .++|++.|++....+..+.+|+.=-..-..|.+-|    +++|.++|++
T Consensus       219 ~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----l~~I~~i~~~  263 (476)
T d1js3a_         219 ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHE  263 (476)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----HHHHHHHHHh
Confidence            45666666654333445666666555556677665    6777777763