Psyllid ID: psy481

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSGPDGQVKS
cccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccEEEccccHHHHHHHHcccccccccc
ccccHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHccccEccHHHcccEEEEEEcccEEcccccEEccccccHHHHHHHHccEEEEEEEEEHHHEcccccccccccccEEEEccHHHHHHHHHHHcccccccc
MTNLVEEAKRIAAYQavddnvlnntavgigsGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNnmvlgdlethpdlscvidgadevdENLVLikggggcltqEKIVASCTPKLVIIADHTkqsknlgdrykkgipievsyhtvppilyrsgsgpdgqvks
MTNLVEEAKRIAAyqavddnvlnntavgigsgsTVVYAVDRLAERIkaeklkivcvpTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAdhtkqsknlgdryKKGIPIEVsyhtvppilyrsgsgpdgqvks
MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSGPDGQVKS
*********RIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILY************
******EAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSGPD*Q***
MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSG*********
**NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSG*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSGPDGQVKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query166 2.2.26 [Sep-21-2011]
P47968303 Ribose-5-phosphate isomer yes N/A 0.837 0.458 0.625 1e-47
A2TLM1306 Ribose-5-phosphate isomer yes N/A 0.837 0.454 0.618 5e-47
Q3T186264 Ribose-5-phosphate isomer no N/A 0.837 0.526 0.625 1e-46
P49247311 Ribose-5-phosphate isomer yes N/A 0.837 0.446 0.625 1e-46
Q551C2232 Ribose-5-phosphate isomer yes N/A 0.885 0.633 0.546 1e-38
A3LP13237 Ribose-5-phosphate isomer yes N/A 0.927 0.649 0.5 4e-37
A7TLF7259 Ribose-5-phosphate isomer N/A N/A 0.867 0.555 0.5 5e-37
A5DXV6284 Ribose-5-phosphate isomer N/A N/A 0.849 0.496 0.537 6e-37
Q5AJ92263 Ribose-5-phosphate isomer N/A N/A 0.903 0.570 0.477 2e-36
Q6CTD5274 Ribose-5-phosphate isomer yes N/A 0.861 0.521 0.523 2e-36
>sp|P47968|RPIA_MOUSE Ribose-5-phosphate isomerase OS=Mus musculus GN=Rpia PE=2 SV=2 Back     alignment and function desciption
 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/139 (62%), Positives = 111/139 (79%)

Query: 6   EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
           EEAK++A++ AV+++V NN  +GIGSGST+V+AV R+AER+K E L ++C+PTSFQARQL
Sbjct: 72  EEAKKLASHTAVENHVKNNQVLGIGSGSTIVHAVQRIAERVKQENLDLICIPTSFQARQL 131

Query: 66  ILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADH 125
           IL+  + L DL+ HP++   IDGADEVD  L LIKGGGGCLTQEKIVA    + ++IAD 
Sbjct: 132 ILQYGLTLSDLDQHPEIDLAIDGADEVDAELNLIKGGGGCLTQEKIVAGYASRFIVIADF 191

Query: 126 TKQSKNLGDRYKKGIPIEV 144
            K SKNLGDR+ KGIPIEV
Sbjct: 192 RKDSKNLGDRWHKGIPIEV 210

Mus musculus (taxid: 10090)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 6
>sp|A2TLM1|RPIA_PIG Ribose-5-phosphate isomerase OS=Sus scrofa GN=RPIA PE=2 SV=1 Back     alignment and function description
>sp|Q3T186|RPIA_BOVIN Ribose-5-phosphate isomerase (Fragment) OS=Bos taurus GN=RPIA PE=2 SV=2 Back     alignment and function description
>sp|P49247|RPIA_HUMAN Ribose-5-phosphate isomerase OS=Homo sapiens GN=RPIA PE=1 SV=3 Back     alignment and function description
>sp|Q551C2|RPIA_DICDI Ribose-5-phosphate isomerase OS=Dictyostelium discoideum GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|A3LP13|RPIA_PICST Ribose-5-phosphate isomerase OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=RKI1 PE=3 SV=1 Back     alignment and function description
>sp|A7TLF7|RPIA_VANPO Ribose-5-phosphate isomerase OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RKI1 PE=3 SV=1 Back     alignment and function description
>sp|A5DXV6|RPIA_LODEL Ribose-5-phosphate isomerase OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=RKI1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AJ92|RPIA_CANAL Ribose-5-phosphate isomerase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RKI1 PE=3 SV=1 Back     alignment and function description
>sp|Q6CTD5|RPIA_KLULA Ribose-5-phosphate isomerase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RKI1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
157129892 271 ribose-5-phosphate isomerase [Aedes aegy 0.951 0.583 0.651 3e-53
158297654 278 AGAP011457-PA [Anopheles gambiae str. PE 0.891 0.532 0.682 1e-52
170035968235 ribose-5-phosphate isomerase [Culex quin 0.969 0.685 0.627 1e-52
307188435240 Ribose-5-phosphate isomerase [Camponotus 0.909 0.629 0.675 3e-52
345482406 294 PREDICTED: ribose-5-phosphate isomerase 0.969 0.547 0.652 3e-52
380024567237 PREDICTED: ribose-5-phosphate isomerase- 0.969 0.679 0.639 3e-52
312373936 300 hypothetical protein AND_16786 [Anophele 0.969 0.536 0.645 3e-52
383866370260 PREDICTED: ribose-5-phosphate isomerase- 0.843 0.538 0.7 4e-52
66540754237 PREDICTED: ribose-5-phosphate isomerase 0.969 0.679 0.639 6e-52
348520606 277 PREDICTED: ribose-5-phosphate isomerase- 0.861 0.516 0.671 1e-51
>gi|157129892|ref|XP_001661804.1| ribose-5-phosphate isomerase [Aedes aegypti] gi|108872043|gb|EAT36268.1| AAEL011627-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 127/158 (80%)

Query: 8   AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL 67
           AK+IAA++AVD+ V +NT VG+GSGSTVVYAV RLAER+K E LK+VC+PTSFQARQLI+
Sbjct: 43  AKKIAAFKAVDEYVRDNTVVGVGSGSTVVYAVQRLAERVKTEGLKLVCIPTSFQARQLII 102

Query: 68  KNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTK 127
           ++ +VLGDLE HP + C IDGADEVD ++VLIKGGGGCL QEKIVASC  +LV+IAD+TK
Sbjct: 103 ESGLVLGDLEQHPKIHCAIDGADEVDADMVLIKGGGGCLLQEKIVASCADQLVVIADYTK 162

Query: 128 QSKNLGDRYKKGIPIEVSYHTVPPILYRSGSGPDGQVK 165
            SK LG++YKKGIPIEV      PI  +  +   G +K
Sbjct: 163 NSKKLGEQYKKGIPIEVVPMAYVPIRNKVAAKYGGSLK 200

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158297654|ref|XP_554756.3| AGAP011457-PA [Anopheles gambiae str. PEST] gi|157014680|gb|EAL39480.3| AGAP011457-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|170035968|ref|XP_001845838.1| ribose-5-phosphate isomerase [Culex quinquefasciatus] gi|167878437|gb|EDS41820.1| ribose-5-phosphate isomerase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|307188435|gb|EFN73192.1| Ribose-5-phosphate isomerase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345482406|ref|XP_001608093.2| PREDICTED: ribose-5-phosphate isomerase [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380024567|ref|XP_003696066.1| PREDICTED: ribose-5-phosphate isomerase-like [Apis florea] Back     alignment and taxonomy information
>gi|312373936|gb|EFR21601.1| hypothetical protein AND_16786 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|383866370|ref|XP_003708643.1| PREDICTED: ribose-5-phosphate isomerase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|66540754|ref|XP_623160.1| PREDICTED: ribose-5-phosphate isomerase [Apis mellifera] Back     alignment and taxonomy information
>gi|348520606|ref|XP_003447818.1| PREDICTED: ribose-5-phosphate isomerase-like [Oreochromis niloticus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
ZFIN|ZDB-GENE-041114-24275 rpia "ribose 5-phosphate isome 0.861 0.52 0.636 1.6e-47
UNIPROTKB|F1P520235 RPIA "Uncharacterized protein" 0.849 0.6 0.666 3.8e-46
MGI|MGI:103254303 Rpia "ribose 5-phosphate isome 0.837 0.458 0.625 5e-44
RGD|1311377303 Rpia "ribose 5-phosphate isome 0.837 0.458 0.625 5e-44
UNIPROTKB|A2TLM1306 RPIA "Ribose-5-phosphate isome 0.837 0.454 0.618 1.7e-43
UNIPROTKB|F1STC1306 RPIA "Ribose-5-phosphate isome 0.837 0.454 0.618 1.7e-43
UNIPROTKB|G5E534306 RPIA "Ribose-5-phosphate isome 0.837 0.454 0.625 2.2e-43
UNIPROTKB|Q3T186264 RPIA "Ribose-5-phosphate isome 0.837 0.526 0.625 2.2e-43
UNIPROTKB|J9NX73311 RPIA "Uncharacterized protein" 0.837 0.446 0.625 2.2e-43
UNIPROTKB|P49247311 RPIA "Ribose-5-phosphate isome 0.837 0.446 0.625 2.2e-43
ZFIN|ZDB-GENE-041114-24 rpia "ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 91/143 (63%), Positives = 116/143 (81%)

Query:     2 TNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ 61
             + + EEAK++AAY AVD+++ NN  +G+GSGST+VYAVDRLAE+++ EKL IVCVPTSFQ
Sbjct:    39 SRMAEEAKKLAAYAAVDNHIQNNQVIGVGSGSTIVYAVDRLAEKVRQEKLNIVCVPTSFQ 98

Query:    62 ARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVI 121
             ARQLIL++ + L DL+ HP+L   IDGADEVD  L LIKGGGGCLTQEKIVA C    ++
Sbjct:    99 ARQLILQHGLPLSDLDRHPELDVAIDGADEVDTALTLIKGGGGCLTQEKIVAGCAKHFIV 158

Query:   122 IADHTKQSKNLGDRYKKGIPIEV 144
             IAD+ K SK LG ++KKG+P+EV
Sbjct:   159 IADYRKDSKALGQQWKKGVPVEV 181
GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA
GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0016853 "isomerase activity" evidence=IEA
UNIPROTKB|F1P520 RPIA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:103254 Rpia "ribose 5-phosphate isomerase A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311377 Rpia "ribose 5-phosphate isomerase A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A2TLM1 RPIA "Ribose-5-phosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1STC1 RPIA "Ribose-5-phosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G5E534 RPIA "Ribose-5-phosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T186 RPIA "Ribose-5-phosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NX73 RPIA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49247 RPIA "Ribose-5-phosphate isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3LP13RPIA_PICST5, ., 3, ., 1, ., 60.50.92770.6497yesN/A
Q6CTD5RPIA_KLULA5, ., 3, ., 1, ., 60.52380.86140.5218yesN/A
Q551C2RPIA_DICDI5, ., 3, ., 1, ., 60.54600.88550.6336yesN/A
P49247RPIA_HUMAN5, ., 3, ., 1, ., 60.62580.83730.4469yesN/A
Q6BYI4RPIA_DEBHA5, ., 3, ., 1, ., 60.50340.84930.5595yesN/A
P47968RPIA_MOUSE5, ., 3, ., 1, ., 60.62580.83730.4587yesN/A
Q58998RPIA_METJA5, ., 3, ., 1, ., 60.39130.90960.6681yesN/A
A7NNA4RPIA_ROSCS5, ., 3, ., 1, ., 60.38510.86740.6153yesN/A
P72012RPIA_METTH5, ., 3, ., 1, ., 60.36520.90960.6681yesN/A
Q1GX07RPIA_SPHAL5, ., 3, ., 1, ., 60.43750.83130.6052yesN/A
Q6FZP1RPIA_BARQU5, ., 3, ., 1, ., 60.40410.84930.6025yesN/A
A6UUZ8RPIA_META35, ., 3, ., 1, ., 60.36870.92770.6581yesN/A
A2TLM1RPIA_PIG5, ., 3, ., 1, ., 60.61870.83730.4542yesN/A
Q8TQ69RPIA_METAC5, ., 3, ., 1, ., 60.38660.85540.6068yesN/A
Q6CFH4RPIA_YARLI5, ., 3, ., 1, ., 60.4750.92770.6337yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1.60.824
3rd Layer5.3.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
cd01398213 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomeras 6e-59
TIGR00021218 TIGR00021, rpiA, ribose 5-phosphate isomerase 7e-54
COG0120227 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbo 7e-49
PRK00702220 PRK00702, PRK00702, ribose-5-phosphate isomerase A 5e-45
pfam06026172 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isom 5e-36
PLN02384264 PLN02384, PLN02384, ribose-5-phosphate isomerase 5e-31
PRK13978228 PRK13978, PRK13978, ribose-5-phosphate isomerase A 5e-21
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information 
 Score =  182 bits (464), Expect = 6e-59
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 4/137 (2%)

Query: 8   AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL 67
            KR AA  AVD  V +   +G+G+GSTV Y ++ L ER++ E L IV VPTSFQ  +L  
Sbjct: 1   LKRAAARAAVDY-VEDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTSFQTEELAR 59

Query: 68  KNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTK 127
           +  + L DL+  P L   IDGADEVD +L LIKGGGG L +EKIVAS   K ++IAD +K
Sbjct: 60  ELGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESK 119

Query: 128 QSKNLGDRYKKGIPIEV 144
             + LG   +  +P+EV
Sbjct: 120 LVERLG---EFPLPVEV 133

This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea. Length = 213
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase Back     alignment and domain information
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Back     alignment and domain information
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase Back     alignment and domain information
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 166
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 100.0
PRK00702220 ribose-5-phosphate isomerase A; Provisional 100.0
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 100.0
PRK13978228 ribose-5-phosphate isomerase A; Provisional 100.0
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 100.0
PLN02384264 ribose-5-phosphate isomerase 100.0
KOG3075|consensus261 99.97
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 99.96
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 99.95
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 99.94
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 99.94
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 99.94
PRK10411240 DNA-binding transcriptional activator FucR; Provis 99.94
PRK13509251 transcriptional repressor UlaR; Provisional 99.94
COG1349253 GlpR Transcriptional regulators of sugar metabolis 99.94
PF06026173 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (ph 99.92
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 98.43
PRK08535310 translation initiation factor IF-2B subunit delta; 98.4
PRK08335275 translation initiation factor IF-2B subunit alpha; 98.39
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 98.37
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 98.36
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 98.31
KOG1466|consensus313 98.07
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 98.06
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 98.03
PRK05772363 translation initiation factor IF-2B subunit alpha; 97.98
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 97.95
PRK06036339 translation initiation factor IF-2B subunit alpha; 97.74
PRK06371329 translation initiation factor IF-2B subunit alpha; 97.72
PRK06372253 translation initiation factor IF-2B subunit delta; 97.7
PRK08334356 translation initiation factor IF-2B subunit beta; 97.65
TIGR02428207 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit 97.21
COG1788220 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, 97.19
KOG1465|consensus353 97.03
PRK09920219 acetyl-CoA:acetoacetyl-CoA transferase subunit alp 97.02
TIGR02429222 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit 96.72
PF04198255 Sugar-bind: Putative sugar-binding domain; InterPr 96.2
TIGR03458 485 YgfH_subfam succinate CoA transferases. A closely 96.15
PF02550198 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase 95.61
COG2390321 DeoR Transcriptional regulator, contains sigma fac 95.55
TIGR01584 492 citF citrate lyase, alpha subunit. This is a model 95.32
KOG1467|consensus556 95.26
cd00458169 SugarP_isomerase SugarP_isomerase: Sugar Phosphate 93.8
PRK15418318 transcriptional regulator LsrR; Provisional 93.16
PF04223 466 CitF: Citrate lyase, alpha subunit (CitF); InterPr 92.28
COG0427 501 ACH1 Acetyl-CoA hydrolase [Energy production and c 92.03
COG3051 513 CitF Citrate lyase, alpha subunit [Energy producti 91.61
COG0182346 Predicted translation initiation factor 2B subunit 90.79
TIGR01584492 citF citrate lyase, alpha subunit. This is a model 88.65
TIGR01110 543 mdcA malonate decarboxylase, alpha subunit. This m 87.87
PF01144217 CoA_trans: Coenzyme A transferase; InterPro: IPR00 87.44
COG0373414 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] 86.3
PF04223466 CitF: Citrate lyase, alpha subunit (CitF); InterPr 83.87
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 81.4
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information 
Probab=100.00  E-value=5e-40  Score=266.53  Aligned_cols=154  Identities=44%  Similarity=0.630  Sum_probs=140.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccEEEEc
Q psy481            9 KRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDG   88 (166)
Q Consensus         9 K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~af~g   88 (166)
                      |++||++|++ +|++||+||||+|||+.+++++|.++.+.+++++++||||+.++.+|.+.|++++.+.+..++|+||+|
T Consensus         2 K~~IA~~A~~-~I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iDiafdG   80 (218)
T TIGR00021         2 KRAAAEAAAE-YVEDGMVVGLGTGSTVAYFIEALGERVKQEGLDIVGVPTSKQTAELARELGIPLSSLDEVPELDLAIDG   80 (218)
T ss_pred             HHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHhhhccCCCEEEEeCCHHHHHHHHHCCCCEEcHhHCCccCEEEEC
Confidence            8999999999 999999999999999999999998753323347999999999999998889999999888799999999


Q ss_pred             cccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC----------
Q psy481           89 ADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS----------  158 (166)
Q Consensus        89 ad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~----------  158 (166)
                      ||+||+++++++++++++++||+++++|+++|+|+|+|||+++|++   +|+||||.|++|.+|.++|.+          
T Consensus        81 aD~id~~~~~ikg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg~---~plPvEV~p~~~~~v~~~l~~~g~~~~~R~~  157 (218)
T TIGR00021        81 ADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKLVDKLGK---FPLPVEVVPFAWKAVARKLEKLGGEPTLRQG  157 (218)
T ss_pred             CCeECCCCCEecccHHHHHHHHHHHHhhCcEEEEEEchhhhcccCC---CCccEEECccHHHHHHHHHHHcCCCcEEeec
Confidence            9999999999999999999999999999999999999999999984   799999999999999999964          


Q ss_pred             CCCCCccC
Q psy481          159 GPDGQVKS  166 (166)
Q Consensus       159 ~~~~~~~~  166 (166)
                      +++||+++
T Consensus       158 ~~~~p~vT  165 (218)
T TIGR00021       158 NKGGPVVT  165 (218)
T ss_pred             CCCCcEEC
Confidence            26677753

This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>KOG3075|consensus Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway [] Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>KOG1466|consensus Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit Back     alignment and domain information
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>KOG1465|consensus Back     alignment and domain information
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional Back     alignment and domain information
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit Back     alignment and domain information
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC Back     alignment and domain information
>TIGR03458 YgfH_subfam succinate CoA transferases Back     alignment and domain information
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA Back     alignment and domain information
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>KOG1467|consensus Back     alignment and domain information
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>PRK15418 transcriptional regulator LsrR; Provisional Back     alignment and domain information
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2 Back     alignment and domain information
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion] Back     alignment and domain information
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>TIGR01110 mdcA malonate decarboxylase, alpha subunit Back     alignment and domain information
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another Back     alignment and domain information
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] Back     alignment and domain information
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2 Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
1xtz_A264 Crystal Structure Of The S. Cerevisiae D-Ribose-5-P 1e-36
2f8m_A244 Ribose 5-Phosphate Isomerase From Plasmodium Falcip 5e-25
3hhe_A255 Crystal Structure Of Ribose-5-Phosphate Isomerase A 5e-22
3ixq_A226 Structure Of Ribose 5-Phosphate Isomerase A From Me 7e-21
1uj4_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 4e-19
1uj5_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 6e-19
1lk5_A229 Structure Of The D-Ribose-5-Phosphate Isomerase Fro 3e-18
4gmk_A228 Crystal Structure Of Ribose 5-Phosphate Isomerase F 6e-16
3l7o_A225 Crystal Structure Of Ribose-5-Phosphate Isomerase A 1e-15
3u7j_A239 Crystal Structure Of Ribose-5-Phosphate Isomerase A 3e-15
1m0s_A219 Northeast Structural Genomics Consortium (Nesg Id I 4e-13
1ks2_A219 Crystal Structure Analysis Of The Rpia, Structural 1e-11
1lkz_A219 Crystal Structure Of D-Ribose-5-Phosphate Isomerase 1e-11
3kwm_A224 Crystal Structure Of Ribose-5-Isomerase A Length = 1e-11
3enq_A235 Substrate And Inhibitor Complexes Of Ribose 5-Phosp 5e-11
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae D-Ribose-5-Phosphate Isomerase: Comparison With The Archeal And Bacterial Enzymes Length = 264 Back     alignment and structure 
Iteration: 1

 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 8/152 (5%)
Query: 1   MTNLVEEAKRIAAYQAVDDNVL--NNTAVGIGSGSTVVYAVDRLAERIKAEKL-----KI 53
           + N +E+AKR AAY+AVD+N+   ++  +GIGSGSTVVY  +R+ + +   K      K 
Sbjct: 14  LGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKF 73
Query: 54  VCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVA 113
           +C+PT FQ+R LIL N + LG +E +P +    DGADEVDENL LIKGGG CL QEK+V+
Sbjct: 74  ICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVS 133
Query: 114 SCTPKLVIIADHTKQS-KNLGDRYKKGIPIEV 144
           +     +++AD  K+S K+LG  +++G+PIE+
Sbjct: 134 TSAKTFIVVADSRKKSPKHLGKNWRQGVPIEI 165
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum Length = 244 Back     alignment and structure
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Bartonella Henselae Length = 255 Back     alignment and structure
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From Methanocaldococcus Jannaschii Length = 226 Back     alignment and structure
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-phosphate Isomerase Length = 227 Back     alignment and structure
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed With Ribose-5-Phosphate Length = 227 Back     alignment and structure
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From Pyrococcus Horikoshii Length = 229 Back     alignment and structure
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The Probiotic Bacterium Lactobacillus Salivarius Ucc118 Length = 228 Back     alignment and structure
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Streptococcus Mutans Ua159 Length = 225 Back     alignment and structure
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis Length = 239 Back     alignment and structure
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21) Length = 219 Back     alignment and structure
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural Genomics, Protein Ec1268. Length = 219 Back     alignment and structure
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia) From Escherichia Coli. Length = 219 Back     alignment and structure
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A Length = 224 Back     alignment and structure
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate Isomerase A From Vibrio Vulnificus Yj016 Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 6e-63
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 8e-63
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 2e-59
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 2e-58
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 1e-57
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 1e-57
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 1e-56
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 5e-55
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 4e-51
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 8e-51
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 2e-50
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Length = 264 Back     alignment and structure
 Score =  193 bits (493), Expect = 6e-63
 Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 8/152 (5%)

Query: 1   MTNLVEEAKRIAAYQAVDDN--VLNNTAVGIGSGSTVVYAVDRLAERIKAEK-----LKI 53
           + N +E+AKR AAY+AVD+N    ++  +GIGSGSTVVY  +R+ + +   K      K 
Sbjct: 14  LGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKF 73

Query: 54  VCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVA 113
           +C+PT FQ+R LIL N + LG +E +P +    DGADEVDENL LIKGGG CL QEK+V+
Sbjct: 74  ICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVS 133

Query: 114 SCTPKLVIIADHTKQS-KNLGDRYKKGIPIEV 144
           +     +++AD  K+S K+LG  +++G+PIE+
Sbjct: 134 TSAKTFIVVADSRKKSPKHLGKNWRQGVPIEI 165
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Length = 244 Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Length = 225 Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Length = 255 Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Length = 229 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Length = 227 Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Length = 219 Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Length = 239 Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Length = 219 Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Length = 224 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 100.0
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 100.0
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 100.0
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 100.0
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 100.0
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 100.0
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 100.0
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 100.0
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 100.0
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 100.0
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 100.0
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 100.0
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 99.49
2w48_A315 Sorbitol operon regulator; SORC, activator, repres 98.33
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 98.27
2o0m_A345 Transcriptional regulator, SORC family; structural 98.24
3a11_A338 Translation initiation factor EIF-2B, delta subun; 98.23
1poi_B260 Glutaconate coenzyme A-transferase; COA, glutamate 98.09
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 98.01
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 98.0
3d3u_A439 4-hydroxybutyrate COA-transferase; alpha-beta prot 97.87
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 97.81
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 97.81
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 97.81
1k6d_A220 Acetate COA-transferase alpha subunit; structural 97.66
3cdk_A241 Succinyl-COA:3-ketoacid-coenzyme A transferase sub 97.54
3rrl_B207 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 97.52
3d3u_A 439 4-hydroxybutyrate COA-transferase; alpha-beta prot 97.39
1poi_A317 Glutaconate coenzyme A-transferase; COA, glutamate 96.86
2g39_A 497 Acetyl-COA hydrolase; coenzyme A transferase, stru 96.83
3qli_A 455 Coenzyme A transferase; COEN transferase; 1.90A {Y 96.72
4eu9_A 514 Succinyl-COA:acetate coenzyme A transferase; HET: 96.7
2oas_A 436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 96.67
2nvv_A 506 Acetyl-COA hydrolase/transferase family protein; a 96.53
2hj0_A 519 Putative citrate lyase, ALFA subunit; alpha beta p 96.35
3gk7_A 448 4-hydroxybutyrate COA-transferase; alpha/beta prot 96.22
3kv1_A267 Transcriptional repressor; alpha-beta structure, s 96.19
1xr4_A 509 Putative citrate lyase alpha chain/citrate-ACP TR; 96.19
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 96.11
3nze_A267 Putative transcriptional regulator, sugar-binding; 96.03
3eh7_A 434 4-hydroxybutyrate COA-transferase; citrate lyase, 95.89
2ahu_A 531 Putative enzyme YDIF; COA transferase, glutamyl th 95.82
3efb_A266 Probable SOR-operon regulator; alpha-beta-alpha sa 95.76
3k6m_A481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 95.3
2ahu_A531 Putative enzyme YDIF; COA transferase, glutamyl th 95.2
2gnp_A266 Transcriptional regulator; structural genomics, MC 94.97
2r5f_A264 Transcriptional regulator, putative; transcription 93.84
2oas_A436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 93.32
1xr4_A509 Putative citrate lyase alpha chain/citrate-ACP TR; 93.2
1stz_A338 Heat-inducible transcription repressor HRCA homol; 91.57
3k6m_A 481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 91.35
2okg_A255 Central glycolytic gene regulator; alpha/beta/alph 89.62
3qli_A455 Coenzyme A transferase; COEN transferase; 1.90A {Y 88.64
3gk7_A 448 4-hydroxybutyrate COA-transferase; alpha/beta prot 86.34
3eh7_A434 4-hydroxybutyrate COA-transferase; citrate lyase, 86.19
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 82.39
2hj0_A519 Putative citrate lyase, ALFA subunit; alpha beta p 80.29
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
Probab=100.00  E-value=2.9e-43  Score=285.36  Aligned_cols=149  Identities=33%  Similarity=0.487  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccEE
Q psy481            6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCV   85 (166)
Q Consensus         6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~a   85 (166)
                      .++|++||++|++ ||+|||+||||||||+.+++++|.++++.+++++++||||..++.+|.++|++++.+++..++|+|
T Consensus         2 ~~~K~~iA~~A~~-~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a   80 (225)
T 3l7o_A            2 EELKKIAGVRAAQ-YVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVT   80 (225)
T ss_dssp             CHHHHHHHHHHHT-TCCTTCEEEECCSTTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEE
T ss_pred             hHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhccCceEEecCcccccCEE
Confidence            4789999999999 999999999999999999999999876555568999999999999999999999999988899999


Q ss_pred             EEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC
Q psy481           86 IDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS  158 (166)
Q Consensus        86 f~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~  158 (166)
                      |+|||+||+++++++|+++++++||+++++|+++|+++|+|||+++||.   +|+||||.|++|.+|.++|.+
T Consensus        81 ~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg~---~plPvEV~p~a~~~v~~~l~~  150 (225)
T 3l7o_A           81 VDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLGA---FRLPVEVVQYGAERLFREFEK  150 (225)
T ss_dssp             EECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSCS---SCEEEEECSTTHHHHHHHHHH
T ss_pred             EEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcCC---CCEEEEEehhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999985   899999999999999999943
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2 Back     alignment and structure
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis} Back     alignment and structure
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2 Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A* Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0 Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0 Back     alignment and structure
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8 Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8 Back     alignment and structure
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3 Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A* Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 166
d1o8ba1124 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphat 1e-30
d1uj4a1151 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate 3e-28
d1lk5a1149 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate 3e-25
d1m0sa1147 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate 2e-19
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (264), Expect = 1e-30
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 27  VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVI 86
           VG+G+GST  + +D L      +      V +S  + + +    + + DL     L   +
Sbjct: 2   VGVGTGSTAAHFIDALGTM---KGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYV 58

Query: 87  DGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEV 144
           DGADE++ ++ +IKGGG  LT+EKI+AS   K + IAD +KQ   L     +G  + +
Sbjct: 59  DGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILA---NRGADVAL 113
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 151 Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 149 Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 100.0
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.98
d1o8ba1124 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.97
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 98.46
d1k6da_219 Acetate:CoA transferase alpha {Escherichia coli [T 97.87
d1lk5a280 D-ribose-5-phosphate isomerase (RpiA), lid domain 97.84
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 97.76
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 97.66
d1uj4a274 D-ribose-5-phosphate isomerase (RpiA), lid domain 97.61
d2g39a1221 Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin 97.38
d1ooya2242 Succinate:CoA transferase, N-terminal domain {Pig 97.07
d1m0sa272 D-ribose-5-phosphate isomerase (RpiA), lid domain 97.0
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 96.97
d1o8ba272 D-ribose-5-phosphate isomerase (RpiA), lid domain 96.96
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 96.91
d1poib_260 Glutaconate:CoA transferase beta {Acidaminococcus 96.75
d1poia_317 Glutaconate:CoA transferase alpha {Acidaminococcus 96.28
d2gnpa1262 Transcriptional regulator SP0247 {Streptococcus pn 96.15
d3efba1255 Sor-operon regulator SorC {Shigella flexneri [TaxI 95.75
d1xr4a1236 Putative citrate lyase alpha chain, citF2 {Salmone 95.54
d2okga1250 Central glycolytic gene regulator CggR {Bacillus s 95.42
d2r5fa1258 Transcriptional regulator PSPTO2395 {Pseudomonas s 94.05
d1ooya1221 Succinate:CoA transferase, C-terminal domain {Pig 94.01
d1xr4a2269 Putative citrate lyase alpha chain, citF2 {Salmone 93.68
d2ahua2273 Putative enzyme YdiF N-terminal domain {Escherichi 92.67
d1gpja2159 Glutamyl tRNA-reductase middle domain {Archaeon Me 92.5
d2ahua1247 Putative enzyme YdiF C-terminal domain {Escherichi 92.03
d2o0ma1247 Transcriptional regulator EF1965 {Enterococcus fae 89.44
d1v3va2182 Leukotriene b4 12-hydroxydehydrogenase/prostagland 80.83
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.8e-36  Score=226.41  Aligned_cols=146  Identities=36%  Similarity=0.463  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcC-CCeEEEcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481            5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEK-LKIVCVPTSFQARQLILKNNMVLGDLETHPDLS   83 (166)
Q Consensus         5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~-~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D   83 (166)
                      +..+|++||++|++ ||+|||+||||+|||+++++++|.++..... .++..+++.......+...+.....+..+ ++|
T Consensus         3 ~~~~K~~IA~~A~~-~I~dg~~I~LdsGTT~~~la~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~l~~~-~~D   80 (151)
T d1uj4a1           3 LESYKKEAAHAAIA-YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPE-GVD   80 (151)
T ss_dssp             THHHHHHHHHHHHT-TCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCTT-CEE
T ss_pred             HHHHHHHHHHHHHH-hCCCCCEEEECchHHHHHHHHHHHHHHhhcccceeeeccchhhHHHHHhcCCccccccccc-eec
Confidence            56789999999999 9999999999999999999999987543322 46778888888777666666667777776 899


Q ss_pred             EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHH
Q psy481           84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPI  152 (166)
Q Consensus        84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v  152 (166)
                      ++|+||||+|.+++++.++++....+|.|+++|+++|+|+|||||+++|+.++++|+||||.|.++++|
T Consensus        81 ~aF~g~~gvd~~~g~~~~~~~e~~~kk~~~~~A~~~ilLaD~SKlv~~L~~~~~~p~piev~p~~~~~v  149 (151)
T d1uj4a1          81 LAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLLFVGMATRALVAGPFGVEEL  149 (151)
T ss_dssp             EEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSEECSCCSEEEEEETTEEEEE
T ss_pred             EEEEccccccCCcCcccCCHHHHHHHHHHHHhcCeEEEEEECCceecccccCCCCCEeEEEccchHhhc
Confidence            999999999999999888887777789999999999999999999999976667899999999998765
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure