Psyllid ID: psy4837

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MITTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFAPKKPHHNEHKMRSQILPKVEIANVSSN
Secondary Structure (PSIPRED)
cEEEEEEccEEEEEccccEEEEEEEEccccccEEEEEEcccccccHHcccEEcEEEEEEccccccccEEEEEccccccccccccccEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEcccHEEEEEEccccccccEEEEEEEEcccHHHHHHHcEEEEEEHEHEEcccccEEEEEccccccccccHHHHHccccEEEEEEccc
Coil and Loop (DISEMBL)
MITTHRYLLTLHVYPGETALAFytaknptnspivgistynvvpfdagqyfnkiqcfcfeeqqlnpheelqifapkkphhnehkmrsqilpkveianvssn
Flexible Loop (DISEMBL)
MITTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFAPKKPHHNEhkmrsqilpkveianvssn
Low Complexity Region (SEG)
MITTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFAPKKPHHNEHKMRSQILPKVEIANVSSN
Disordered region (IsUnstruct)
***THRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQL*************************************
Disordered Region (DISOPRED)
MITTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFAPKKPHHNEHKMRSQILPKVEIANV***
Disordered Region (DISEMBL)
MITTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFAPKK********RSQILPKVEIANVSSN
Disordered Region (DISPRO)
*ITTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFAPKKPHHNEHKMRSQILPKVEIANVS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MITTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFAPKKPHHNEHKMRSQILPKVEIANVSSN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
A3KMZ6	282	Cytochrome c oxidase asse	yes	N/A	0.61	0.216	0.770	1e-24
Q6P8I6	275	Cytochrome c oxidase asse	yes	N/A	0.61	0.221	0.770	1e-24
Q9Y6N1	276	Cytochrome c oxidase asse	yes	N/A	0.61	0.221	0.754	2e-24
Q5R7U6	277	Cytochrome c oxidase asse	yes	N/A	0.61	0.220	0.741	5e-23
O21243	182	Cytochrome c oxidase asse	N/A	N/A	0.61	0.335	0.688	3e-19
Q8GWR0	287	Cytochrome c oxidase asse	yes	N/A	0.61	0.212	0.639	8e-19
P19516	300	Cytochrome c oxidase asse	yes	N/A	0.61	0.203	0.590	3e-17
Q9UTM2	753	Rsm22-cox11 tandem protei	yes	N/A	0.61	0.081	0.557	2e-16
Q86ZU7	753	Rsm22-cox11 tandem protei	yes	N/A	0.61	0.081	0.557	2e-16
Q54HM6	312	Cytochrome c oxidase asse	yes	N/A	0.62	0.198	0.532	2e-16

>sp|A3KMZ6|COX11_BOVIN Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Bos taurus GN=COX11 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct: 168 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 227

Query: 71  I 71
           +
Sbjct: 228 M 228

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.
Bos taurus (taxid: 9913)

>sp|Q6P8I6|COX11_MOUSE Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Mus musculus GN=Cox11 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct: 172 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 231

Query: 71  I 71
           +
Sbjct: 232 M 232

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Mus musculus (taxid: 10090)

>sp|Q9Y6N1|COX11_HUMAN Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Homo sapiens GN=COX11 PE=1 SV=3

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY AKNPT+ P++GISTYN+VPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct: 173 IYVVPGETALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 232

Query: 71  I 71
           +
Sbjct: 233 M 233

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Homo sapiens (taxid: 9606)

>sp|Q5R7U6|COX11_PONAB Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Pongo abelii GN=COX11 PE=3 SV=2

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKI-QCFCFEEQQLNPHEEL 69
           ++V PGETALAFY AKNPT+ P++GISTYN+VPF+AGQYFNKI QCFCFEEQ+LNP EE+
Sbjct: 173 IYVVPGETALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQQCFCFEEQRLNPQEEV 232

Query: 70  QI 71
            +
Sbjct: 233 DM 234

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Pongo abelii (taxid: 9601)

>sp|O21243|COXZ_RECAM Cytochrome c oxidase assembly protein ctaG OS=Reclinomonas americana GN=CTAG PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 50/61 (81%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           + V  GETALAFY+A+NPT+S I+GISTYNV P  AG YFNKIQCFCFEEQ+L PHE + 
Sbjct: 88  IKVMVGETALAFYSAENPTDSSIIGISTYNVNPQQAGIYFNKIQCFCFEEQRLKPHETID 147

Query: 71  I 71
           +
Sbjct: 148 M 148

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Reclinomonas americana (taxid: 48483)

>sp|Q8GWR0|COX11_ARATH Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Arabidopsis thaliana GN=COX11 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 50/61 (81%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           + V PGE+ALAFYTA+N +++PI G+STYNV P  AG YFNKIQCFCFEEQ+L P E++ 
Sbjct: 175 VRVKPGESALAFYTAENKSSAPITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQID 234

Query: 71  I 71
           +
Sbjct: 235 M 235

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Arabidopsis thaliana (taxid: 3702)

>sp|P19516|COX11_YEAST Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX11 PE=3 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY AKN ++  I+G++TY++ P +A QYFNKIQCFCFEEQ+L   EE+ 
Sbjct: 164 VYVLPGETALAFYKAKNYSDKDIIGMATYSIAPGEAAQYFNKIQCFCFEEQKLAAGEEID 223

Query: 71  I 71
           +
Sbjct: 224 M 224

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9UTM2|CO111_SCHPO Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1101 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 49/61 (80%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETAL FYTA+N ++  IVG++TYN+VP  A  YF+K+ CFCFEEQ+L+ HE++ 
Sbjct: 649 IYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLDAHEKVD 708

Query: 71  I 71
           +
Sbjct: 709 L 709

Cox11-1 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q86ZU7|CO112_SCHPO Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cos1102 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 49/61 (80%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETAL FYTA+N ++  IVG++TYN+VP  A  YF+K+ CFCFEEQ+L+ HE++ 
Sbjct: 649 IYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLDAHEKVD 708

Query: 71  I 71
           +
Sbjct: 709 L 709

Cox11-2 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54HM6|COX11_DICDI Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Dictyostelium discoideum GN=cox11 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 10  TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEEL 69
           T+   PGE  L FY A N T++PI+G++TYN+ P  AG YF KIQCFCF+EQ++N HE +
Sbjct: 211 TIECLPGEPVLCFYRATNNTDTPIIGVATYNITPMKAGTYFTKIQCFCFDEQRINAHETI 270

Query: 70  QI 71
            +
Sbjct: 271 DM 272

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
91078418	223	PREDICTED: similar to cytochrome c oxida	0.61	0.273	0.819	2e-24
348523972	257	PREDICTED: cytochrome c oxidase assembly	0.61	0.237	0.819	3e-24
357631268	179	cytochrome c oxidase assembly protein co	0.63	0.351	0.761	3e-24
387915826	254	Cytochrome c oxidase assembly protein CO	0.61	0.240	0.803	3e-24
157114300	235	cytochrome c oxidase assembly protein co	0.61	0.259	0.786	4e-24
348562570	398	PREDICTED: cytochrome c oxidase assembly	0.61	0.153	0.754	5e-24
327279153	245	PREDICTED: cytochrome c oxidase assembly	0.61	0.248	0.803	8e-24
432926023	251	PREDICTED: cytochrome c oxidase assembly	0.61	0.243	0.803	9e-24
130484638	259	COX11 homolog, cytochrome c oxidase asse	0.61	0.235	0.770	1e-23
170059909	238	cytochrome c oxidase assembly protein CO	0.61	0.256	0.786	1e-23

>gi|91078418|ref|XP_974674.1| PREDICTED: similar to cytochrome c oxidase assembly protein cox11 [Tribolium castaneum] gi|270004002|gb|EFA00450.1| hypothetical protein TcasGA2_TC003306 [Tribolium castaneum]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 58/61 (95%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           + V+PGETALAFYTAKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQQLNPHEE+ 
Sbjct: 119 ITVHPGETALAFYTAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQQLNPHEEVD 178

Query: 71  I 71
           +
Sbjct: 179 M 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348523972|ref|XP_003449497.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial-like [Oreochromis niloticus]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           + V PGETALAFY AKNPT+ PI+GISTYNVVPFDAGQYFNKIQCFCFEEQ+LNPHEE+ 
Sbjct: 152 IFVVPGETALAFYRAKNPTDKPIIGISTYNVVPFDAGQYFNKIQCFCFEEQRLNPHEEVD 211

Query: 71  I 71
           +
Sbjct: 212 M 212

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357631268|gb|EHJ78858.1| cytochrome c oxidase assembly protein cox11 [Danaus plexippus]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 58/63 (92%)

Query: 9   LTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEE 68
           + + V PGETALAFYTA+NPT+ P++GISTYNV+PFDAGQYFNKIQCFCFEEQQLNPHE+
Sbjct: 73  VDITVVPGETALAFYTARNPTDKPVIGISTYNVIPFDAGQYFNKIQCFCFEEQQLNPHEQ 132

Query: 69  LQI 71
           + +
Sbjct: 133 VDM 135

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387915826|gb|AFK11522.1| Cytochrome c oxidase assembly protein COX11, mitochondrial precursor [Callorhinchus milii]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 57/61 (93%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY AKNPT+ P++GISTYNVVPFDAGQYFNKIQCFCFEEQ+LNPHEE+ 
Sbjct: 151 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFDAGQYFNKIQCFCFEEQRLNPHEEVD 210

Query: 71  I 71
           +
Sbjct: 211 M 211

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157114300|ref|XP_001658032.1| cytochrome c oxidase assembly protein cox11 [Aedes aegypti] gi|108877373|gb|EAT41598.1| AAEL006779-PA [Aedes aegypti]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 58/61 (95%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFYTAKNP++ P++GISTYNV+PF+AGQYFNKIQCFCFEEQQLNPHEE+ 
Sbjct: 127 INVVPGETALAFYTAKNPSDQPVIGISTYNVIPFEAGQYFNKIQCFCFEEQQLNPHEEVD 186

Query: 71  I 71
           +
Sbjct: 187 M 187

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348562570|ref|XP_003467083.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial-like [Cavia porcellus]

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY A+NPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct: 295 IYVVPGETALAFYKARNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 354

Query: 71  I 71
           +
Sbjct: 355 M 355

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327279153|ref|XP_003224322.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial-like [Anolis carolinensis]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 57/61 (93%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY AKNPT+ PI+GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNPHEE+ 
Sbjct: 142 VYVVPGETALAFYKAKNPTDKPIIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPHEEVD 201

Query: 71  I 71
           +
Sbjct: 202 M 202

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432926023|ref|XP_004080792.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial-like [Oryzias latipes]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY AKNPT+ PI+GISTYNVVPFDAGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct: 146 IYVVPGETALAFYRAKNPTDKPIIGISTYNVVPFDAGQYFNKIQCFCFEEQRLNPREEVD 205

Query: 71  I 71
           +
Sbjct: 206 M 206

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|130484638|ref|NP_001076427.1| COX11 homolog, cytochrome c oxidase assembly protein [Danio rerio] gi|126631529|gb|AAI33934.1| Zgc:162286 protein [Danio rerio]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           ++V PGETALAFY A+NPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNPHEE+ 
Sbjct: 156 IYVVPGETALAFYRARNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPHEEVD 215

Query: 71  I 71
           +
Sbjct: 216 M 216

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170059909|ref|XP_001865568.1| cytochrome c oxidase assembly protein COX11, mitochondrial [Culex quinquefasciatus] gi|167878513|gb|EDS41896.1| cytochrome c oxidase assembly protein COX11, mitochondrial [Culex quinquefasciatus]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           + V PGETALAFYTAKNPT+ P++GISTYNV+PF+AG YFNKIQCFCFEEQQLNPHEE+ 
Sbjct: 129 IRVVPGETALAFYTAKNPTDHPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVD 188

Query: 71  I 71
           +
Sbjct: 189 M 189

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
ZFIN|ZDB-GENE-050506-82	259	cox11 "COX11 cytochrome c oxid	0.78	0.301	0.625	2e-24
FB|FBgn0051648	241	CG31648 [Drosophila melanogast	0.61	0.253	0.770	3.3e-24
UNIPROTKB|A3KMZ6	282	COX11 "Cytochrome c oxidase as	0.61	0.216	0.770	8.7e-24
UNIPROTKB|F1MY49	282	COX11 "Cytochrome c oxidase as	0.61	0.216	0.770	8.7e-24
UNIPROTKB|E2RAW8	304	COX11 "Uncharacterized protein	0.61	0.200	0.770	8.7e-24
UNIPROTKB|F1RSF6	271	LOC100739503 "Uncharacterized	0.61	0.225	0.770	8.7e-24
MGI|MGI:1917052	275	Cox11 "cytochrome c oxidase as	0.61	0.221	0.770	8.7e-24
RGD|1309822	275	Cox11 "cytochrome c oxidase as	0.61	0.221	0.770	8.7e-24
UNIPROTKB|Q9Y6N1	276	COX11 "Cytochrome c oxidase as	0.61	0.221	0.754	1.1e-23
UNIPROTKB|F1NAP0	222	COX11 "Uncharacterized protein	0.61	0.274	0.786	1.4e-23

ZFIN|ZDB-GENE-050506-82 cox11 "COX11 cytochrome c oxidase assembly homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 50/80 (62%), Positives = 64/80 (80%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY A+NPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNPHEE+ 
Sbjct:   156 IYVVPGETALAFYRARNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPHEEVD 215

Query:    71 --IFAPKKPHHNEHKMRSQI 88
               +F    P  +E    +++
Sbjct:   216 MPVFFYIDPEFDEDPRMARV 235

GO:0005507 "copper ion binding" evidence=IEA

FB|FBgn0051648 CG31648 [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             + V PGETALAFYTA+NPT+ P++GISTYNV+PF+AG YFNKIQCFCFEEQQLNPHEE+ 
Sbjct:   131 IKVAPGETALAFYTARNPTDKPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVD 190

Query:    71 I 71
             +
Sbjct:   191 M 191

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|A3KMZ6 COX11 "Cytochrome c oxidase assembly protein COX11, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct:   168 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 227

Query:    71 I 71
             +
Sbjct:   228 M 228

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|F1MY49 COX11 "Cytochrome c oxidase assembly protein COX11, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct:   168 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 227

Query:    71 I 71
             +
Sbjct:   228 M 228

GO:0005739 "mitochondrion" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|E2RAW8 COX11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct:   201 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 260

Query:    71 I 71
             +
Sbjct:   261 M 261

GO:0005739 "mitochondrion" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|F1RSF6 LOC100739503 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct:   168 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 227

Query:    71 I 71
             +
Sbjct:   228 M 228

GO:0005507 "copper ion binding" evidence=IEA

MGI|MGI:1917052 Cox11 "cytochrome c oxidase assembly protein 11" [Mus musculus (taxid:10090)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct:   172 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 231

Query:    71 I 71
             +
Sbjct:   232 M 232

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309822 Cox11 "cytochrome c oxidase assembly homolog 11 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ P++GISTYNVVPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct:   172 IYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 231

Query:    71 I 71
             +
Sbjct:   232 M 232

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y6N1 COX11 "Cytochrome c oxidase assembly protein COX11, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ P++GISTYN+VPF+AGQYFNKIQCFCFEEQ+LNP EE+ 
Sbjct:   173 IYVVPGETALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVD 232

Query:    71 I 71
             +
Sbjct:   233 M 233

GO:0005507 "copper ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0004129 "cytochrome-c oxidase activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=TAS

GO:0007585 "respiratory gaseous exchange" evidence=TAS

GO:0008535 "respiratory chain complex IV assembly" evidence=TAS

UNIPROTKB|F1NAP0 COX11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 48/61 (78%), Positives = 55/61 (90%)

Query:    11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
             ++V PGETALAFY AKNPT+ PI+GISTYNVVPF+AGQYFNKIQCFCFEEQ LNP EE+ 
Sbjct:   119 IYVVPGETALAFYKAKNPTDKPIIGISTYNVVPFEAGQYFNKIQCFCFEEQWLNPQEEVD 178

Query:    71 I 71
             +
Sbjct:   179 M 179

GO:0005507 "copper ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWR0	COX11_ARATH	No assigned EC number	0.6393	0.61	0.2125	yes	N/A
Q6P8I6	COX11_MOUSE	No assigned EC number	0.7704	0.61	0.2218	yes	N/A
Q167V9	COXZ_ROSDO	No assigned EC number	0.5737	0.61	0.3144	yes	N/A
P08303	COXZ_PARDE	No assigned EC number	0.5357	0.56	0.2886	yes	N/A
Q9ZDM3	COXZ_RICPR	No assigned EC number	0.5084	0.59	0.3314	yes	N/A
Q1GE51	COXZ_RUEST	No assigned EC number	0.6071	0.56	0.2871	yes	N/A
A7IPB8	COXZ_XANP2	No assigned EC number	0.5178	0.56	0.2758	yes	N/A
A3KMZ6	COX11_BOVIN	No assigned EC number	0.7704	0.61	0.2163	yes	N/A
Q3J5F7	COXZ_RHOS4	No assigned EC number	0.5535	0.56	0.2931	yes	N/A
Q9Y6N1	COX11_HUMAN	No assigned EC number	0.7540	0.61	0.2210	yes	N/A
P19516	COX11_YEAST	No assigned EC number	0.5901	0.61	0.2033	yes	N/A
Q5LNX9	COXZ_RUEPO	No assigned EC number	0.6071	0.56	0.2931	yes	N/A
A3PGX7	COXZ_RHOS1	No assigned EC number	0.5535	0.56	0.2931	yes	N/A
Q54HM6	COX11_DICDI	No assigned EC number	0.5322	0.62	0.1987	yes	N/A
Q9UTM2	CO111_SCHPO	2, ., 1, ., 1, ., -	0.5573	0.61	0.0810	yes	N/A
A4WQ59	COXZ_RHOS5	No assigned EC number	0.5245	0.61	0.3177	yes	N/A
Q5R7U6	COX11_PONAB	No assigned EC number	0.7419	0.61	0.2202	yes	N/A
Q86ZU7	CO112_SCHPO	2, ., 1, ., 1, ., -	0.5573	0.61	0.0810	yes	N/A
P56940	COXZ_RHOSH	No assigned EC number	0.5535	0.56	0.2931	yes	N/A
A1BA38	COXZ_PARDP	No assigned EC number	0.5357	0.56	0.2871	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	100
pfam04442	150	pfam04442, CtaG_Cox11, Cytochrome c oxidase assemb	8e-34
PTZ00128	232	PTZ00128, PTZ00128, cytochrome c oxidase assembly	1e-33
PRK05089	188	PRK05089, PRK05089, cytochrome C oxidase assembly	2e-26
COG3175	195	COG3175, COX11, Cytochrome oxidase assembly factor	3e-26

>gnl|CDD|218089 pfam04442, CtaG_Cox11, Cytochrome c oxidase assembly protein CtaG/Cox11

 Score =  113 bits (285), Expect = 8e-34
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 13  VYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           V+PGETALAFY AKNP++ PIVG +  +V P  AG YFNKI+CFCF +Q L P EE++
Sbjct: 62  VHPGETALAFYEAKNPSDRPIVGQAVPSVTPGQAGAYFNKIECFCFTQQTLQPGEEVE 119

Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units. The C terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae. Met 224 is also thought to play a role in copper transfer or stabilising the copper site. Length = 150

>gnl|CDD|185464 PTZ00128, PTZ00128, cytochrome c oxidase assembly protein-like; Provisional

 Score =  115 bits (290), Expect = 1e-33
 Identities = 39/59 (66%), Positives = 51/59 (86%)

Query: 13  VYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71
           V PGETALAFY AKN ++ P++G++TY++ P +AG YFNKIQCFCFEEQ+LNPHEE+ +
Sbjct: 134 VLPGETALAFYRAKNRSDKPVIGVATYHIAPPEAGLYFNKIQCFCFEEQRLNPHEEVDM 192

Length = 232

>gnl|CDD|235341 PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional

 Score = 96.1 bits (240), Expect = 2e-26
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 10  TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEEL 69
           ++ V+PGE  L FY A+N ++ PIVG +  +V P  AG YFNKI+CFCF +Q L P E  
Sbjct: 87  SVDVHPGELNLVFYEAENLSDRPIVGQAIPSVTPGQAGAYFNKIECFCFTQQTLQPGETR 146

Query: 70  Q 70
           +
Sbjct: 147 E 147

Length = 188

>gnl|CDD|225716 COG3175, COX11, Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]

 Score = 95.6 bits (238), Expect = 3e-26
 Identities = 33/59 (55%), Positives = 42/59 (71%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEEL 69
           ++V PGET L FY A+N ++ PI G +TYNV P  AG YFNK++CFCF EQ L P E +
Sbjct: 87  VYVRPGETNLIFYEAENLSDKPITGQATYNVAPGQAGAYFNKVECFCFTEQTLKPGETV 145

Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PF04442	152	CtaG_Cox11: Cytochrome c oxidase assembly protein	100.0
PTZ00128	232	cytochrome c oxidase assembly protein-like; Provis	100.0
PRK05089	188	cytochrome C oxidase assembly protein; Provisional	100.0
COG3175	195	COX11 Cytochrome oxidase assembly factor [Posttran	100.0
KOG2540|consensus	269		100.0
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	83.97
PF14874	102	PapD-like: Flagellar-associated PapD-like	82.32
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	81.07
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	80.99
TIGR02756	232	TraK_Ftype type-F conjugative transfer system secr	80.7

>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein

Probab=100.00  E-value=8e-42  Score=251.94  Aligned_cols=86  Identities=45%  Similarity=0.785  Sum_probs=64.5

Q ss_pred             eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837           3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP   77 (100)
Q Consensus         3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~   77 (100)
                      ..+|+|++|.|||||+++++|+|+|++|++++|||+|||+|++||.||||||||||+||+|+|||+++|     |||+|+
T Consensus        53 ~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPv~F~IDp~i~  132 (152)
T PF04442_consen   53 EFKPEQRSVKVHPGETALVFYEATNPSDKPITGQAIPNVTPGEAGKYFNKIECFCFEEQTLAPGETVDMPVVFYIDPDIP  132 (152)
T ss_dssp             EEE-S-SEEEEETT--EEEEEEEEE-SSS-EE---EEEE-SSS-STTECCS-TTS-S--EE-TT-EEEEEEEEEE-GGGG
T ss_pred             EEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeECHHHhhhhccccceEeccCcCcCCCCeEEEEEEEEECCccc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999     999999


Q ss_pred             CCCchhhhccc
Q psy4837          78 HHNEHKMRSQI   88 (100)
Q Consensus        78 ~d~~~~~~~~~   88 (100)
                      +|.++++++.|
T Consensus       133 ~d~~~~~v~~i  143 (152)
T PF04442_consen  133 EDPDMKDVKTI  143 (152)
T ss_dssp             SSTTTTT--BE
T ss_pred             CCcccCCcCEE
Confidence            99999999987

In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.

>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional

Probab=100.00  E-value=1.4e-40  Score=259.07  Aligned_cols=87  Identities=48%  Similarity=0.872  Sum_probs=84.8

Q ss_pred             eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837           3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP   77 (100)
Q Consensus         3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~   77 (100)
                      ..+|+|++|.|||||+++++|+|+|++|++++|||+|||+|++||.||||||||||+||+|+|||+++|     |||+|+
T Consensus       124 ~F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV~P~~Ag~YFnKieCFCF~eQ~L~pgE~~~MPV~F~IDP~i~  203 (232)
T PTZ00128        124 EFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAPPEAGLYFNKIQCFCFEEQRLNPHEEVDMPVFFYIDPDIL  203 (232)
T ss_pred             eEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccccccCCCCeEecCEEEEECCCCC
Confidence            568999999999999999999999999999999999999999999999999999999999999999999     999999


Q ss_pred             CCCchhhhcccc
Q psy4837          78 HHNEHKMRSQIL   89 (100)
Q Consensus        78 ~d~~~~~~~~~~   89 (100)
                      +|.++++++.|-
T Consensus       204 ~D~~~~~v~~IT  215 (232)
T PTZ00128        204 NDPRLKWVDEIT  215 (232)
T ss_pred             CCcccCCcCEEE
Confidence            999999999874

>PRK05089 cytochrome C oxidase assembly protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=246.89  Aligned_cols=77  Identities=42%  Similarity=0.747  Sum_probs=75.9

Q ss_pred             eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837           3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP   77 (100)
Q Consensus         3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~   77 (100)
                      ..+|+|++|+|||||+++++|+|+|++|++++|||+|||+|++||.||||||||||+||+|+|||+++|     |||+|+
T Consensus        80 ~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPV~F~IDP~i~  159 (188)
T PRK05089         80 EFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQAIPSVTPGQAGAYFNKIECFCFTQQTLQPGETREMPVVFYVDPDLP  159 (188)
T ss_pred             eEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccCcccCCCCeEecCEEEEECCCcc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999     999999


Q ss_pred             CC
Q psy4837          78 HH   79 (100)
Q Consensus        78 ~d   79 (100)
                      +|
T Consensus       160 ~d  161 (188)
T PRK05089        160 KD  161 (188)
T ss_pred             cc
Confidence            99

>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-39  Score=245.23  Aligned_cols=87  Identities=43%  Similarity=0.712  Sum_probs=84.5

Q ss_pred             eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837           3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP   77 (100)
Q Consensus         3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~   77 (100)
                      ...|.|++|.|||||+++++|+|+|++|++++|||+|||+|++||+||||+|||||+||+|+|||+++|     ||||+.
T Consensus        79 ~F~p~q~~v~v~pGet~~~~y~a~N~sd~~itg~A~~nv~P~~Ag~YF~KveCFCFteq~L~pgE~vemPV~FfVDpd~~  158 (195)
T COG3175          79 RFRPVQREVYVRPGETNLIFYEAENLSDKPITGQATYNVAPGQAGAYFNKVECFCFTEQTLKPGETVEMPVVFFVDPDFA  158 (195)
T ss_pred             eeEecCceeEeccCceEEEEEEEecCCCCCceeEEecccChhHhhhheeeeeEEEeeecccCCCCeEeccEEEEECcccc
Confidence            357999999999999999999999999999999999999999999999999999999999999999999     999999


Q ss_pred             CCCchhhhcccc
Q psy4837          78 HHNEHKMRSQIL   89 (100)
Q Consensus        78 ~d~~~~~~~~~~   89 (100)
                      +|++++|++.|.
T Consensus       159 ~dPe~kdvk~iT  170 (195)
T COG3175         159 DDPEMKDVKTIT  170 (195)
T ss_pred             cCcccCCCCeEE
Confidence            999999999874

>KOG2540|consensus

Probab=100.00  E-value=5.3e-34  Score=223.95  Aligned_cols=88  Identities=49%  Similarity=0.819  Sum_probs=85.4

Q ss_pred             eceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCCC
Q psy4837           4 THRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKPH   78 (100)
Q Consensus         4 ~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~~   78 (100)
                      ..|.|++|.|+|||++++||.|+|.||++++|.|+||++|++||.||||||||||+||.|.|||+++|     |||+...
T Consensus       150 f~PqQrEiyV~PGEtALaFYta~N~sdkpIiGvstYni~P~~Aa~YFnKiqCFCFEEQ~L~pgE~vDmPVFFyIDPefa~  229 (269)
T KOG2540|consen  150 FTPQQREIYVLPGETALAFYTAENPSDKPIIGVSTYNITPGQAAVYFNKIQCFCFEEQKLNPGEQVDMPVFFYIDPEFAT  229 (269)
T ss_pred             ccccceEEEEcCCcceeeeEeccCCCCCCceeeEeeccCccHhhhheeceeEEeehhhccCCCcccCcceEEEeCccccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999     9999999


Q ss_pred             CCchhhhcccccc
Q psy4837          79 HNEHKMRSQILPK   91 (100)
Q Consensus        79 d~~~~~~~~~~~~   91 (100)
                      |..+++++.||=.
T Consensus       230 DP~m~~id~i~Ls  242 (269)
T KOG2540|consen  230 DPAMDGIDDILLS  242 (269)
T ss_pred             CcccccccceEEE
Confidence            9999999998743

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=83.97  E-value=2.8  Score=29.51  Aligned_cols=69  Identities=20%  Similarity=0.223  Sum_probs=45.1

Q ss_pred             EEEeecCCeEEEEEEEECCCCCcEEEEEeC-----------cccccchh------hcccceeeeeccccccCCCCeeec-
Q psy4837          10 TLHVYPGETALAFYTAKNPTNSPIVGISTY-----------NVVPFDAG------QYFNKIQCFCFEEQQLNPHEELQI-   71 (100)
Q Consensus        10 ~v~V~pGE~~~v~y~a~N~sd~~v~GqAvp-----------sVsP~~A~------~YF~KieCFCF~eQ~L~pgE~~~M-   71 (100)
                      .+.+.||+...+...++|.++++++-.+..           .+++....      .-|.++-=.=- +-+|.|||++.. 
T Consensus        20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~-~Vtl~~~~sk~V~   98 (121)
T PF06030_consen   20 DLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPK-EVTLPPNESKTVT   98 (121)
T ss_pred             EEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCc-EEEECCCCEEEEE
Confidence            477999999999999999999998754432           22222211      13333322222 278999999988 


Q ss_pred             cCCCCCCC
Q psy4837          72 FAPKKPHH   79 (100)
Q Consensus        72 vDP~i~~d   79 (100)
                      +.=.+|+.
T Consensus        99 ~~i~~P~~  106 (121)
T PF06030_consen   99 FTIKMPKK  106 (121)
T ss_pred             EEEEcCCC
Confidence            65555654

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=82.32  E-value=4.1  Score=26.36  Aligned_cols=55  Identities=25%  Similarity=0.413  Sum_probs=38.5

Q ss_pred             EeecCCeEEEEEEEECCCCCcEEEEEeCccc-ccchhhcccceeeeeccccccCCCCeeec---cCC
Q psy4837          12 HVYPGETALAFYTAKNPTNSPIVGISTYNVV-PFDAGQYFNKIQCFCFEEQQLNPHEELQI---FAP   74 (100)
Q Consensus        12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVs-P~~A~~YF~KieCFCF~eQ~L~pgE~~~M---vDP   74 (100)
                      .|..|+.+.....++|.+..+..    |.+. |.....+|   .+. ..+..|.||++.++   +.|
T Consensus        15 ~v~~g~~~~~~v~l~N~s~~p~~----f~v~~~~~~~~~~---~v~-~~~g~l~PG~~~~~~V~~~~   73 (102)
T PF14874_consen   15 NVFVGQTYSRTVTLTNTSSIPAR----FRVRQPESLSSFF---SVE-PPSGFLAPGESVELEVTFSP   73 (102)
T ss_pred             EEccCCEEEEEEEEEECCCCCEE----EEEEeCCcCCCCE---EEE-CCCCEECCCCEEEEEEEEEe
Confidence            57899999999999999999854    3332 22222222   222 35789999999999   663

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=81.07  E-value=4.1  Score=23.84  Aligned_cols=36  Identities=25%  Similarity=0.484  Sum_probs=28.1

Q ss_pred             EEEECCCCCcEEEEEeCcccccchhhcccceeeeec----cccccCCCCeeec
Q psy4837          23 YTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCF----EEQQLNPHEELQI   71 (100)
Q Consensus        23 y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF----~eQ~L~pgE~~~M   71 (100)
                      |.++|.+++++.=..+             +..|=|.    ...+|+|||+..+
T Consensus         2 F~~~N~g~~~L~I~~v-------------~tsCgCt~~~~~~~~i~PGes~~i   41 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDV-------------QTSCGCTTAEYSKKPIAPGESGKI   41 (45)
T ss_pred             EEEEECCCCcEEEEEe-------------eEccCCEEeeCCcceECCCCEEEE
Confidence            8899999999876554             3567774    5688999998765

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=80.99  E-value=0.93  Score=28.69  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             eecCCeEEEEEEEECCCCCcEEE-EEeCcccccchhhcccceeeeeccccccCCCCeeec-cCCCCCCCC
Q psy4837          13 VYPGETALAFYTAKNPTNSPIVG-ISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-FAPKKPHHN   80 (100)
Q Consensus        13 V~pGE~~~v~y~a~N~sd~~v~G-qAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-vDP~i~~d~   80 (100)
                      |.||+...+...++|..+.++.. ....++ |.-...-+.--+-     ..|.|||++.. +.=..|.|.
T Consensus         1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~-----~~l~pG~s~~~~~~V~vp~~a   64 (78)
T PF10633_consen    1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASV-----PSLPPGESVTVTFTVTVPADA   64 (78)
T ss_dssp             --TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE-------B-TTSEEEEEEEEEE-TT-
T ss_pred             CCCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCcccc-----ccCCCCCEEEEEEEEECCCCC
Confidence            57999999999999999877543 222333 5322211111111     18999999988 444445543

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>TIGR02756 TraK_Ftype type-F conjugative transfer system secretin TraK

Probab=80.70  E-value=2.6  Score=32.69  Aligned_cols=47  Identities=23%  Similarity=0.236  Sum_probs=36.6

Q ss_pred             CeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837          17 ETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI   71 (100)
Q Consensus        17 E~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M   71 (100)
                      +..-.-|+++|.+++++.-.--=-.+|+-.|.-|.+        +.|.|||+..+
T Consensus       182 ~l~g~~y~l~N~s~~~~~L~E~~F~~~gv~AVa~~~--------~~L~PGe~t~v  228 (232)
T TIGR02756       182 HLKGERFELENKTNSPLELTESWFWQPGTRAVALSK--------PQLAPGETADL  228 (232)
T ss_pred             CcEEEEEEEEcCCCCCeEechHHhCCcCcEEEEecc--------CccCCCCEEEE
Confidence            455678999999999998876666677666665544        79999998765

The TraK protein is predicted to interact with the TraV and TraB proteins as part of the scaffold which extends from the inner membrane, through the periplasm to the cell envelope and through which the F-type conjugative pilus passes. TraK is homologous to the P-type IV secretion system protein TrbG, the Ti-type protein VirB9 and the I-type TraN protein. The protein is related to the secretin family especially the HrcC subgroup of the type III secretion system. The protein is hypothesized to oligomerize to form a ring structure akin to other secretins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1so9_A	164	Solution Structure Of Apocox11, 30 Structures Lengt		6e-13

>pdb|1SO9|A Chain A, Solution Structure Of Apocox11, 30 Structures Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 39/61 (63%)
Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           + V  GET    Y AKN  ++P  G +T+NV P  AG YFNK+QCFCF E  L P EE++
Sbjct: 56  IDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEME 115
Query: 71  I 71
           +
Sbjct: 116 M 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
1so9_A	164	Cytochrome C oxidase assembly protein CTAG; immuno	1e-15

>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A Length = 164

 Score = 67.2 bits (163), Expect = 1e-15
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 10  TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEEL 69
            + V  GET    Y AKN  ++P  G +T+NV P  AG YFNK+QCFCF E  L P EE+
Sbjct: 55  DIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEM 114

Query: 70  QI 71
           ++
Sbjct: 115 EM 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
1so9_A	164	Cytochrome C oxidase assembly protein CTAG; immuno	100.0
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.49
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	87.81
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	82.17

>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A

Probab=100.00  E-value=1.5e-42  Score=257.69  Aligned_cols=87  Identities=37%  Similarity=0.625  Sum_probs=84.8

Q ss_pred             eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837           3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP   77 (100)
Q Consensus         3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~   77 (100)
                      ..+|+|++|+|||||+++++|+|+|++|++++|||+|||+|++||.||||||||||+||+|+|||+++|     |||+|+
T Consensus        48 ~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~G~A~ynV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F~IDP~i~  127 (164)
T 1so9_A           48 EFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIV  127 (164)
T ss_dssp             EEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGG
T ss_pred             EEEeceeEEEEcCCCeEEEEEEEECCCCCcEEEEECceeCHHHHhhhccceeeEcccCcccCCCCeEeeeEEEEECCCcC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999     999999


Q ss_pred             CCCchhhhcccc
Q psy4837          78 HHNEHKMRSQIL   89 (100)
Q Consensus        78 ~d~~~~~~~~~~   89 (100)
                      +|.++++++.|-
T Consensus       128 ~D~~~~~v~tIT  139 (164)
T 1so9_A          128 KPVETQGIKTLT  139 (164)
T ss_dssp             SSTTTTTCCBCC
T ss_pred             CCcccCCCCEEE
Confidence            999999999874

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.49  E-value=0.042  Score=40.02  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=42.0

Q ss_pred             EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeecc----ccccCCCCeeec---cCCC
Q psy4837          12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFE----EQQLNPHEELQI---FAPK   75 (100)
Q Consensus        12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~----eQ~L~pgE~~~M---vDP~   75 (100)
                      .+. |+.....|.++|..+.++.=..+             +..|-|+.    ..+++|||+.++   ++|+
T Consensus       130 ~i~-g~~~~~~f~i~N~G~~pL~I~~v-------------~~scgct~~~~~~~~i~PGe~~~i~v~~~~~  186 (220)
T 2qsv_A          130 QLD-GETTKAAIEIRNVGAGPLRLHSV-------------TTRNPALTAVPDRTEIKPGGSTLLRIAVDPQ  186 (220)
T ss_dssp             ECT-TSCEEEEEEEEECSSSCEEEEEE-------------EECSTTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred             ccC-CCeEEEEEEEEECCCCCEEEEEE-------------EeCCCCEeeecCCccCCCCCEEEEEEEEecC
Confidence            456 99999999999999999986554             45799987    889999999998   6664

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.81  E-value=1  Score=28.53  Aligned_cols=58  Identities=21%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeec--cccccCCCCeeec---cCCCCC
Q psy4837          12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCF--EEQQLNPHEELQI---FAPKKP   77 (100)
Q Consensus        12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF--~eQ~L~pgE~~~M---vDP~i~   77 (100)
                      .|.-|+.....|.++|.++.+..=+..+..+  ..+      .||-+  .+-+|.||++..+   ++|+-+
T Consensus        21 ~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~--~~~------~~f~v~p~~g~i~pg~~~~i~V~f~~~~~   83 (112)
T 2e6j_A           21 KVFTGSAHCYEAILYNKGSIDALFNMTPPTS--ALG------ACFVFSPKEGIIEPSGVQAIQISFSSIIL   83 (112)
T ss_dssp             EEESSCCEEEEEEEEECCSSCEEEEECCCSS--HHH------HHCEEESSEEEECTTBCCEEEEEECCCCC
T ss_pred             eEEECCEEEEEEEEEECCcceEEEEEecCCc--ccc------CcEEEECCcCEECCCCEEEEEEEEECCCc
Confidence            5778999999999999999876655433111  000      13433  3668999999988   888654

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=82.17  E-value=1.7  Score=31.34  Aligned_cols=56  Identities=13%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             eecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec---cCCCCCC
Q psy4837          13 VYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI---FAPKKPH   78 (100)
Q Consensus        13 V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M---vDP~i~~   78 (100)
                      |..|+.....|.++|.+++++.=..+ .+ |    .||.- .   -...+|+|||+.++   .|++-..
T Consensus        15 v~~g~~~~~~~~i~N~g~~pl~i~~~-~~-p----~~~~~-~---~~~~~I~PG~~g~I~vt~~~~~~~   73 (220)
T 2qsv_A           15 SMPEDEGVVRLVVNNTDESDLQVAVV-SL-P----SFVSL-D---DRAFRLQAREPRELNLSLAVPRNM   73 (220)
T ss_dssp             BCTTCCCEEEEEEEECSSSCEEEEEE-EC-C----TTEEC-S---CCEEEECSSSCEEEEEEECCCTTC
T ss_pred             ccCCCcceEEEEEEeCCCCceEEEec-cC-C----CceEe-e---eCcceeCCCCceEEEEEEcchhcc
Confidence            67899999999999999999987765 11 2    22221 1   13589999998888   7776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1so9a_	131	b.146.1.1 (A:) Cytochrome C oxidase assembly prote	2e-21

>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]} Length = 131

class: All beta proteins
fold: Ctag/Cox11
superfamily: Ctag/Cox11
family: Ctag/Cox11
domain: Cytochrome C oxidase assembly protein CtaG
species: Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]

 Score = 79.9 bits (197), Expect = 2e-21
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 10 TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEEL 69
           + V  GET    Y AKN  ++P  G +T+NV P  AG YFNK+QCFCF E  L P EE+
Sbjct: 35 DIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEM 94

Query: 70 Q 70
          +
Sbjct: 95 E 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1so9a_	131	Cytochrome C oxidase assembly protein CtaG {Rhizob	100.0
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	86.77

>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}

class: All beta proteins
fold: Ctag/Cox11
superfamily: Ctag/Cox11
family: Ctag/Cox11
domain: Cytochrome C oxidase assembly protein CtaG
species: Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]

Probab=100.00  E-value=7.6e-41  Score=238.96  Aligned_cols=87  Identities=37%  Similarity=0.625  Sum_probs=84.5

Q ss_pred             eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837           3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP   77 (100)
Q Consensus         3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~   77 (100)
                      ..+|++++|.|||||.++++|+|+|+++++++|||+|||+|++||.||+|||||||++|+|+|||+++|     |||+|+
T Consensus        28 ~F~P~~~~i~V~pGe~~~v~y~a~N~s~~~~~g~A~~nV~P~~a~~Yf~KieCFCF~~Q~L~pgE~~~mpv~F~IDP~i~  107 (131)
T d1so9a_          28 EFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIV  107 (131)
T ss_dssp             EEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGG
T ss_pred             EEEecceEEEEeCCCeEEEEEEEECCCCCcEEEEEEeeeCHHHHhhheecCcEEEEeeeEECCCCEEEEeEEEEECCccc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999     999999


Q ss_pred             CCCchhhhcccc
Q psy4837          78 HHNEHKMRSQIL   89 (100)
Q Consensus        78 ~d~~~~~~~~~~   89 (100)
                      +|.+.++++.|-
T Consensus       108 ~D~~~~~i~~iT  119 (131)
T d1so9a_         108 KPVETQGIKTLT  119 (131)
T ss_dssp             SSTTTTTCCBCC
T ss_pred             cCCCcCCcCEEE
Confidence            999999999873

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=86.77  E-value=0.23  Score=31.36  Aligned_cols=54  Identities=13%  Similarity=0.016  Sum_probs=38.5

Q ss_pred             EEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837          10 TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI   71 (100)
Q Consensus        10 ~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M   71 (100)
                      ++.|.||+...+...++|..+.+.....+-.-.|.-...  .      .....|+|||+...
T Consensus        10 ~~~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~------~~~~~L~pG~s~~~   63 (103)
T d1w8oa1          10 DVALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--Q------GSVEPLMPGRQAKG   63 (103)
T ss_dssp             CEEECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--E------EEECCBCTTCEEEE
T ss_pred             ceeeCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--c------CcceeeCCCCcEEE
Confidence            578999999999999999998887643332234532211  1      33456999999988