Psyllid ID: psy4857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEEEEccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccEEEHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccEEEEccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEEEEEccccccccEEEEEEEEHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEcccccccEEEEEEccccHHHHcccccccccccHHHHHHHHHHHHHHHHEEEEEEEEEHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEcccccccEEEEEEccccHHHHEccccccccccHHHHHHHHHHHHHHHHEEEEEEEEEHHHcccccccEEEEEEHEEHHHccccccc
Coil and Loop (DISEMBL)
marqgnrldskkvnselFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLArtqstrcydfkETAEKIQLGFRIYlgispnisnwsaggdefslifetnpmlefvelpdnctnlkycNVLTGVLRGACEMVQLDITSKFIQdqlkgdnvtelrnselFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLArtqstrcydfkETAEKIQLGFRIYlgispnisnwsaggdefslifetnpmlefvelpdnctnlkycNVLTGVLRGACEMVQLDITSKFIQdqlkgdnvTELRVKFIKTIQDAIPAGED
Flexible Loop (DISEMBL)
marqgnrldskkvnseLFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKfiqdqlkgdnvTELRVKFIKTiqdaipaged
Low Complexity Region (SEG)
MARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED
Disordered region (IsUnstruct)
***************ELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQD*******
Disordered Region (DISOPRED)
************VNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQD*******
Disordered Region (DISEMBL)
*********SKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED
Disordered Region (DISPRO)
*******LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARQGNRLDSKKVNSELFTLTYGALxxxxxxxxxxxxxxxxxxxxxGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALxxxxxxxxxxxxxxxxxxxxxGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q5ZI57	180	Trafficking protein parti	yes	N/A	0.504	0.916	0.680	6e-64
Q5U1Z2	180	Trafficking protein parti	yes	N/A	0.504	0.916	0.668	5e-63
O55013	180	Trafficking protein parti	yes	N/A	0.504	0.916	0.668	5e-63
O43617	180	Trafficking protein parti	yes	N/A	0.504	0.916	0.656	2e-62
Q86K94	186	Trafficking protein parti	yes	N/A	0.541	0.951	0.502	5e-45
P36149	193	Trafficking protein parti	yes	N/A	0.522	0.886	0.528	6e-44
Q4KL14	181	Trafficking protein parti	no	N/A	0.492	0.889	0.530	2e-43
Q9P6P5	183	Transport protein particl	yes	N/A	0.501	0.896	0.520	2e-43
Q5T215	181	Trafficking protein parti	no	N/A	0.492	0.889	0.524	1e-42
Q61IU9	181	Probable trafficking prot	N/A	N/A	0.492	0.889	0.408	2e-32

>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1

 Score =  244 bits (624), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 144/166 (86%), Gaps = 1/166 (0%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYGALV+QL KDY+N EDVNKQLD+MGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 15  NSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS GGDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 75  ADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ +  KF+QD LKGD+VTE+R+KFI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLPAGEE 180

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Gallus gallus (taxid: 9031)

>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1

 Score =  241 bits (615), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1

 Score =  241 bits (615), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 74

Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 151 DQLKGD--NVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 208
           D+L  D  N  E  NSELFTLTYGALV+QL+KDY+++E VN +L++MGYNIGIRLIE+FL
Sbjct: 6   DKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFL 65

Query: 209 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 267
           A++   RC DF ETAE I ++GF+++LG++ ++ +W A   EF L  E NP+++FVELPD
Sbjct: 66  AKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPD 125

Query: 268 NCTN-LKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGE 326
              + L Y N+L GV+RGA EMVQ+ +   F++  L  D+ +E++V   + + D IP G 
Sbjct: 126 QYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIPVGY 185

Query: 327 D 327
           D
Sbjct: 186 D 186

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|P36149|BET3_YEAST Trafficking protein particle complex subunit BET3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET3 PE=1 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 3/174 (1%)

Query: 157 NVTELRNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTR 215
           N TE  N+ELFTLTYG++V+QL +DY+ +   VN  L  MGYNIG RLIEDFLART   R
Sbjct: 20  NKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPR 79

Query: 216 CYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLK 273
           C +  +T+E + +  F+I+L I+PNI+NWS   D FSLI + NP+ +FVELP D   +L 
Sbjct: 80  CENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLW 139

Query: 274 YCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           Y N+L GVL+G+ EMVQLD    F+ D L+GD+ TE++VK  + ++D IP GED
Sbjct: 140 YSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation. Required for sporulation. Has a role late in meiosis following DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/164 (53%), Positives = 118/164 (71%), Gaps = 3/164 (1%)

Query: 1   MARQGN-RLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
           M+R  + R +  K+N +LF LTYGALV+QL KDY+  EDVNK LD+MGYNIG RL+EDFL
Sbjct: 1   MSRPAHKRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFL 60

Query: 60  ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFV-ELP 117
           AR+   RC+ + E    I Q+ F++YLGI+P+++  ++  +EFSLI   NP+ EFV ELP
Sbjct: 61  ARSCVRRCHSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELP 120

Query: 118 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTEL 161
              + L YCN+L G++RGA EMV L     F+QD+LKGD+VTE+
Sbjct: 121 AGRSALCYCNLLCGIIRGALEMVHLAANVTFLQDRLKGDSVTEI 164

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet3 PE=3 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 123/167 (73%), Gaps = 3/167 (1%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           N+ELF LTYG++V+QL KD  N E VN++LD+MGYNIGIRLIEDFLA+T+  RC DF+ET
Sbjct: 18  NAELFVLTYGSIVAQLCKDM-NYEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFRET 76

Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLKYCNVLTG 280
            E + ++GF+++L  SP IS+ S  G+ F L  + NP+ EFVELP D    L Y N+L G
Sbjct: 77  GETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNILCG 136

Query: 281 VLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           V+RGA EM+Q+D+ + F++D L+GD  TE+RV   + +++ IP G++
Sbjct: 137 VIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=1 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 121/164 (73%), Gaps = 3/164 (1%)

Query: 1   MARQGNRL-DSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
           M+R  +R  +  K+N +LF LTYGALV+QL KDY+  EDVN+ LD+MGY IG RL+EDFL
Sbjct: 1   MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL 60

Query: 60  ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFV-ELP 117
           AR+   RC+ + E  + I Q+ F++YLGI+P+++  ++  +EFSLI E NP++EFV ELP
Sbjct: 61  ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP 120

Query: 118 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTEL 161
              ++L YCN+L G++RGA EMV L     F+QD+LKGD+VTE+
Sbjct: 121 AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEI 164

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 110/169 (65%), Gaps = 8/169 (4%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST-RCYDFKE 221
           ++ELF LTYGA+V+++LKDY++ +DV  QLD+MG+N+G RL +DFLA+  +  RC D ++
Sbjct: 16  SAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQ 75

Query: 222 TAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN--CTNLKYCNVL 278
            A+ + +     YLG+S   S+WS+G  EF +  E+NP+ E V++P N     L Y  ++
Sbjct: 76  IADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMI 135

Query: 279 TGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
            G +RGA E V   +   +      G N TE+R++F + ++D++PAGED
Sbjct: 136 AGAIRGALEAVHFKV---YASAADSGAN-TEIRIRFDQVLKDSLPAGED 180

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
307173812	940	Trafficking protein particle complex sub	0.519	0.180	0.779	3e-79
307205405	768	Trafficking protein particle complex sub	0.541	0.230	0.745	9e-78
350410631	178	PREDICTED: trafficking protein particle	0.504	0.926	0.806	9e-75
340719579	178	PREDICTED: trafficking protein particle	0.504	0.926	0.806	1e-74
380015339	180	PREDICTED: trafficking protein particle	0.504	0.916	0.8	1e-74
383863117	178	PREDICTED: trafficking protein particle	0.504	0.926	0.793	2e-74
66529797	178	PREDICTED: trafficking protein particle	0.504	0.926	0.793	2e-74
242005158	178	trafficking protein particle complex sub	0.504	0.926	0.787	1e-73
332031512	261	Trafficking protein particle complex sub	0.504	0.632	0.781	3e-73
156543086	178	PREDICTED: trafficking protein particle	0.504	0.926	0.781	5e-73

>gi|307173812|gb|EFN64590.1| Trafficking protein particle complex subunit 3 [Camponotus floridanus]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 134/172 (77%), Positives = 156/172 (90%)

Query: 156 DNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTR 215
           DN  E +NSELFTLTYGALV+QL+KDY+NVED NKQL+RMGYNIGIRLIEDFLART S R
Sbjct: 769 DNHIENKNSELFTLTYGALVAQLIKDYENVEDANKQLERMGYNIGIRLIEDFLARTGSGR 828

Query: 216 CYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYC 275
           CYDF++TAEKIQ GF+I+LGI+P+I+NWS  GDEFSL FETNP+ EFVELPDNC+NLKYC
Sbjct: 829 CYDFRDTAEKIQSGFKIFLGITPSITNWSPAGDEFSLCFETNPLTEFVELPDNCSNLKYC 888

Query: 276 NVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           N+LTGVLRGACEMVQ++I   F+QDQLK DN+TELRVKF+K ++DAIPAGED
Sbjct: 889 NILTGVLRGACEMVQMEIACWFVQDQLKNDNITELRVKFVKRLEDAIPAGED 940

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205405|gb|EFN83746.1| Trafficking protein particle complex subunit 3 [Harpegnathos saltator]

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 158/181 (87%), Gaps = 4/181 (2%)

Query: 147 KFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIED 206
           +F+  + K  NV    NSELFTLTYGALV+QLLKDY+NVEDVNKQL+RMGYN+GIRLIED
Sbjct: 592 EFLNQEFKNHNV----NSELFTLTYGALVAQLLKDYENVEDVNKQLERMGYNMGIRLIED 647

Query: 207 FLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP 266
           FLART S RCYDF++TAEKIQ GF+I+LGI+P I+NWS  GDEFSL FETNP+ EFVELP
Sbjct: 648 FLARTGSGRCYDFRDTAEKIQSGFKIFLGITPTITNWSPAGDEFSLSFETNPLTEFVELP 707

Query: 267 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGE 326
           D+C NLKYCN+LTG+LRGACEMVQ++I   F+QDQLK DNVTELRVKF+K ++DAIPAGE
Sbjct: 708 DHCLNLKYCNILTGILRGACEMVQMEIACWFVQDQLKNDNVTELRVKFVKRLEDAIPAGE 767

Query: 327 D 327
           D
Sbjct: 768 D 768

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410631|ref|XP_003489097.1| PREDICTED: trafficking protein particle complex subunit 3-like [Bombus impatiens]

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 133/165 (80%), Positives = 150/165 (90%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYGALV+QLLKDY+NVEDVNKQL+RMGYN+GIRLIEDFLART S RCYDF++T
Sbjct: 14  NSELFTLTYGALVAQLLKDYENVEDVNKQLERMGYNMGIRLIEDFLARTGSGRCYDFRDT 73

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           AEKIQ GF+I+LGI+P I+NWSA GDEFSL FE NP+ EFVELPD+C NLKYCNVL GVL
Sbjct: 74  AEKIQTGFKIFLGITPTITNWSAAGDEFSLCFEANPLTEFVELPDHCLNLKYCNVLIGVL 133

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ++I   F+QDQLK DNVTELRVKFIK ++DAIPAGED
Sbjct: 134 RGACEMVQMEIACWFVQDQLKNDNVTELRVKFIKRLEDAIPAGED 178

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719579|ref|XP_003398227.1| PREDICTED: trafficking protein particle complex subunit 3-like [Bombus terrestris]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/165 (80%), Positives = 150/165 (90%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYGALV+QLLKDY+NVEDVNKQL+RMGYN+GIRLIEDFLART S RCYDF++T
Sbjct: 14  NSELFTLTYGALVAQLLKDYENVEDVNKQLERMGYNMGIRLIEDFLARTGSGRCYDFRDT 73

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           AEKIQ GF+I+LGI+P I+NWSA GDEFSL FE NP+ EFVELPD+C NLKYCNVL GVL
Sbjct: 74  AEKIQTGFKIFLGITPTITNWSAAGDEFSLCFEANPLTEFVELPDHCLNLKYCNVLIGVL 133

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ++I   F+QDQLK DNVTELRVKFIK ++DAIPAGED
Sbjct: 134 RGACEMVQMEIACWFVQDQLKNDNVTELRVKFIKRLEDAIPAGED 178

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015339|ref|XP_003691661.1| PREDICTED: trafficking protein particle complex subunit 3-like [Apis florea]

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/165 (80%), Positives = 150/165 (90%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYGALV+QLLKDY+N+EDVNKQL+RMGYN+GIRLIEDFLART S RCYDF++T
Sbjct: 16  NSELFTLTYGALVAQLLKDYENIEDVNKQLERMGYNMGIRLIEDFLARTGSGRCYDFRDT 75

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           AEKIQ GF+I+LGI+P I+NWSA GDEFSL FE NP+ EFVELPD+C NLKYCNVL GVL
Sbjct: 76  AEKIQTGFKIFLGITPTITNWSAAGDEFSLCFEANPLTEFVELPDHCLNLKYCNVLIGVL 135

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ++I   F+QDQLK DNVTELRVKFIK ++DAIPAGED
Sbjct: 136 RGACEMVQMEIACWFVQDQLKNDNVTELRVKFIKRLEDAIPAGED 180

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863117|ref|XP_003707029.1| PREDICTED: trafficking protein particle complex subunit 3-like [Megachile rotundata]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 150/165 (90%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYGALV+QLLKDY+NVEDVNKQL+RMGYN+GIRLIEDFLART S RCYDF++T
Sbjct: 14  NSELFTLTYGALVAQLLKDYENVEDVNKQLERMGYNMGIRLIEDFLARTGSGRCYDFRDT 73

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           AEKIQ GF+I+LGI+P ISNWSA GDEFSL FE NP+ EFVELPD+C NLKYCN+L G+L
Sbjct: 74  AEKIQTGFKIFLGITPTISNWSAAGDEFSLCFEANPLTEFVELPDHCLNLKYCNILIGIL 133

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ++I   F+QDQLK DN+TELRVKFIK ++DAIPAGED
Sbjct: 134 RGACEMVQMEIACWFVQDQLKNDNITELRVKFIKRLEDAIPAGED 178

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66529797|ref|XP_396163.2| PREDICTED: trafficking protein particle complex subunit 3 [Apis mellifera]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 150/165 (90%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYGALV+QLLKDY+N+EDVNKQL+RMGYN+GIRLIEDFLART S RCYDF++T
Sbjct: 14  NSELFTLTYGALVAQLLKDYENIEDVNKQLERMGYNMGIRLIEDFLARTGSGRCYDFRDT 73

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           AEKIQ GF+I+LGI+P I+NWSA GDEFSL FE NP+ EFVELPD+C NLKYCNVL G+L
Sbjct: 74  AEKIQTGFKIFLGITPTITNWSAAGDEFSLCFEANPLTEFVELPDHCLNLKYCNVLIGIL 133

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ++I   F+QDQLK DNVTELRVKFIK ++DAIPAGED
Sbjct: 134 RGACEMVQMEIACWFVQDQLKNDNVTELRVKFIKRLEDAIPAGED 178

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005158|ref|XP_002423439.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis] gi|212506517|gb|EEB10701.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis]

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 151/165 (91%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYG LV+QLL+DY+NVEDVNKQL+RMGYNIG+RLIEDFLART S RC DFKET
Sbjct: 14  NSELFTLTYGTLVTQLLRDYENVEDVNKQLERMGYNIGVRLIEDFLARTSSGRCTDFKET 73

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           AEKIQ+GF+++LGISPNI+NWS  GDEFSLIF++NP++EFVELPDN   LKY N+L GVL
Sbjct: 74  AEKIQMGFKMFLGISPNITNWSPAGDEFSLIFDSNPLIEFVELPDNFMQLKYSNILPGVL 133

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ++I+S F+QDQLKGDN TELRVKFIK ++DAIPAGED
Sbjct: 134 RGACEMVQMEISSWFVQDQLKGDNCTELRVKFIKRLEDAIPAGED 178

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031512|gb|EGI70984.1| Trafficking protein particle complex subunit 3 [Acromyrmex echinatior]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/165 (78%), Positives = 150/165 (90%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYG++V+QLL+DY+NVEDVNKQL+RMGYNIGIRLIEDFLART S RCYDF++T
Sbjct: 97  NSELFTLTYGSIVAQLLQDYENVEDVNKQLERMGYNIGIRLIEDFLARTGSGRCYDFRDT 156

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           AEKIQ GF+I+LGI P+I+NWS  GDEFSL FETNP+ EFVELPDN +NLKYCN+L GVL
Sbjct: 157 AEKIQSGFKIFLGIMPSITNWSPAGDEFSLCFETNPLTEFVELPDNYSNLKYCNILPGVL 216

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ++I   FIQDQLK DN+TELRVKF+K ++DAIPAGED
Sbjct: 217 RGACEMVQMEIVCWFIQDQLKNDNLTELRVKFVKRLEDAIPAGED 261

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543086|ref|XP_001607491.1| PREDICTED: trafficking protein particle complex subunit 3-like [Nasonia vitripennis]

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 129/165 (78%), Positives = 151/165 (91%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           NSELFTLTYGALV+QLLKDY+NV+DVNKQL+RMGYN+GIRLIEDFLART S RCYDFK+T
Sbjct: 14  NSELFTLTYGALVAQLLKDYENVDDVNKQLERMGYNMGIRLIEDFLARTGSGRCYDFKDT 73

Query: 223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
           A+KIQ GF+I+LGI+P I+NWS  GDEFSL FETNP+ EFVELPD+C +LKYCN+L GVL
Sbjct: 74  ADKIQTGFKIFLGITPTITNWSVTGDEFSLCFETNPLTEFVELPDHCLSLKYCNLLPGVL 133

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           RGACEMVQ+++ + F+QDQLK DNVTELRVKFIK ++DAIPAGED
Sbjct: 134 RGACEMVQMEVAAWFVQDQLKNDNVTELRVKFIKRLEDAIPAGED 178

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
UNIPROTKB|Q5ZI57	180	TRAPPC3 "Trafficking protein p	0.504	0.916	0.680	3.5e-59
FB|FBgn0260859	178	Bet3 [Drosophila melanogaster	0.504	0.926	0.648	5.1e-58
MGI|MGI:1351486	180	Trappc3 "trafficking protein p	0.504	0.916	0.668	8.4e-58
RGD|1309135	180	Trappc3 "trafficking protein p	0.504	0.916	0.668	8.4e-58
UNIPROTKB|E2QWX5	180	TRAPPC3 "Uncharacterized prote	0.504	0.916	0.656	1.7e-57
UNIPROTKB|O43617	180	TRAPPC3 "Trafficking protein p	0.504	0.916	0.656	2.2e-57
UNIPROTKB|F1N5V9	151	TRAPPC3 "Uncharacterized prote	0.431	0.933	0.671	2.9e-48
ASPGD|ASPL0000037253	188	AN9086 [Emericella nidulans (t	0.525	0.914	0.502	2.1e-45
DICTYBASE|DDB_G0277135	186	trappc3 "trafficking protein p	0.541	0.951	0.502	2.8e-43
UNIPROTKB|A6NDN0	134	TRAPPC3 "Trafficking protein p	0.406	0.992	0.619	3.5e-43

UNIPROTKB|Q5ZI57 TRAPPC3 "Trafficking protein particle complex subunit 3" [Gallus gallus (taxid:9031)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 113/166 (68%), Positives = 144/166 (86%)

Query:   163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
             NSELFTLTYGALV+QL KDY+N EDVNKQLD+MGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct:    15 NSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:   223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
             A+ I ++ F++YLGI+P+I+NWS GGDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct:    75 ADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query:   282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
             LRGA EMVQ+ +  KF+QD LKGD+VTE+R+KFI+ I+D +PAGE+
Sbjct:   135 LRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLPAGEE 180

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

FB|FBgn0260859 Bet3 [Drosophila melanogaster (taxid:7227)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 107/165 (64%), Positives = 138/165 (83%)

Query:   163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
             NSE  TLTYGALV+Q+L+D++N EDVNKQL+R+GYN+G+RLIEDFLART + RC + +ET
Sbjct:    14 NSEFLTLTYGALVTQMLRDFENAEDVNKQLERIGYNMGMRLIEDFLARTSAPRCLEMRET 73

Query:   223 AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVL 282
             A++IQ  FRIYL I P ISNWS   DEFSL+F++NP+ EFVELP + TNL+Y  +L+G +
Sbjct:    74 ADRIQQAFRIYLNIQPTISNWSPASDEFSLVFDSNPLTEFVELPPDLTNLRYSAILSGCI 133

Query:   283 RGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
             RGA EMVQL++   F+QDQLKGDNVTELRVKF++ +++ IPAGED
Sbjct:   134 RGALEMVQLEVQCWFVQDQLKGDNVTELRVKFVRRLEEVIPAGED 178

GO:0030008 "TRAPP complex" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0033227 "dsRNA transport" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:1351486 Trappc3 "trafficking protein particle complex 3" [Mus musculus (taxid:10090)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/166 (66%), Positives = 142/166 (85%)

Query:   163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
             +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:   223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
             A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query:   282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
             LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct:   135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IDA

RGD|1309135 Trappc3 "trafficking protein particle complex 3" [Rattus norvegicus (taxid:10116)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/166 (66%), Positives = 142/166 (85%)

Query:   163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
             +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:   223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
             A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134

Query:   282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
             LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct:   135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA;ISO

GO:0030008 "TRAPP complex" evidence=IEA;ISO

UNIPROTKB|E2QWX5 TRAPPC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 109/166 (65%), Positives = 143/166 (86%)

Query:   163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
             +SELFTLTYGALV+QL KDY+N EDVNKQLD+MGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74

Query:   223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
             A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query:   282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
             LRGA EMVQ+ + ++F+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct:   135 LRGALEMVQMAVEARFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|O43617 TRAPPC3 "Trafficking protein particle complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 109/166 (65%), Positives = 143/166 (86%)

Query:   163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
             +SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+   RC+DF+ET
Sbjct:    15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 74

Query:   223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
             A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct:    75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134

Query:   282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
             LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct:   135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1N5V9 TRAPPC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 96/143 (67%), Positives = 123/143 (86%)

Query:     1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
             M+RQ NR  +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLD+MGYNIG+RLIEDFL
Sbjct:     1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 60

Query:    60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
             AR+   RC+DF+ETA+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPD
Sbjct:    61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120

Query:   119 NCTNLKYCNVLTGVLRGACEMVQ 141
             N ++L Y N+L GVLRGA EM++
Sbjct:   121 NHSSLIYSNLLCGVLRGALEMIR 143

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

ASPGD|ASPL0000037253 AN9086 [Emericella nidulans (taxid:162425)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 89/177 (50%), Positives = 133/177 (75%)

Query:   156 DNVTELRNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQST 214
             +N  +  N+EL TLTYG +V+QL +DYD N  +VNKQL++MGYNIG+RLIEDFLA++ + 
Sbjct:    12 ENKIDKVNAELVTLTYGTIVAQLCQDYDGNYPEVNKQLEKMGYNIGMRLIEDFLAKSNAQ 71

Query:   215 RCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--- 270
             RC +F+ETA+ I ++GF+I+L I+P ++NW++  ++FSLIF+ NP+ +FVELPD+     
Sbjct:    72 RCANFRETADMISKVGFKIFLNITPTVTNWASDNNQFSLIFDENPLADFVELPDDGRAQD 131

Query:   271 NLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
              L + N+L G+LRGA EMVQ+ I + F+ D L+GD+ TE+RV  ++ I+D +P   D
Sbjct:   132 ELWFSNILCGILRGALEMVQMQIEAHFVSDILRGDDTTEMRVSLVRYIEDEVPPESD 188

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0033106 "cis-Golgi network membrane" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

DICTYBASE|DDB_G0277135 trappc3 "trafficking protein particle complex subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 91/181 (50%), Positives = 129/181 (71%)

Query:   151 DQLKGD--NVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 208
             D+L  D  N  E  NSELFTLTYGALV+QL+KDY+++E VN +L++MGYNIGIRLIE+FL
Sbjct:     6 DKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFL 65

Query:   209 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 267
             A++   RC DF ETAE I ++GF+++LG++ ++ +W A   EF L  E NP+++FVELPD
Sbjct:    66 AKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPD 125

Query:   268 NCTN-LKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGE 326
                + L Y N+L GV+RGA EMVQ+ +   F++  L  D+ +E++V   + + D IP G 
Sbjct:   126 QYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIPVGY 185

Query:   327 D 327
             D
Sbjct:   186 D 186

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|A6NDN0 TRAPPC3 "Trafficking protein particle complex 3, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 83/134 (61%), Positives = 113/134 (84%)

Query:   195 MGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLI 253
             MG+NIG+RLIEDFLAR+   RC+DF+ETA+ I ++ F++YLGI+P+I+NWS  GDEFSLI
Sbjct:     1 MGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLI 60

Query:   254 FETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVK 313
              E NP+++FVELPDN ++L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R++
Sbjct:    61 LENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMR 120

Query:   314 FIKTIQDAIPAGED 327
             FI+ I+D +PAGE+
Sbjct:   121 FIRRIEDNLPAGEE 134

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZI57	TPPC3_CHICK	No assigned EC number	0.6807	0.5045	0.9166	yes	N/A
Q86K94	TPPC3_DICDI	No assigned EC number	0.5027	0.5412	0.9516	yes	N/A
P36149	BET3_YEAST	No assigned EC number	0.5287	0.5229	0.8860	yes	N/A
O43617	TPPC3_HUMAN	No assigned EC number	0.6566	0.5045	0.9166	yes	N/A
Q5U1Z2	TPPC3_RAT	No assigned EC number	0.6686	0.5045	0.9166	yes	N/A
O55013	TPPC3_MOUSE	No assigned EC number	0.6686	0.5045	0.9166	yes	N/A
Q9P6P5	BET3_SCHPO	No assigned EC number	0.5209	0.5015	0.8961	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	327
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	3e-49
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	3e-48
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	0.003

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  161 bits (409), Expect = 3e-49
 Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 6/151 (3%)

Query: 166 LFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEK 225
           LF L YG LVS LL+D    EDVN +L++MGYNIG RLIE  LAR+ S RC D  E  + 
Sbjct: 1   LFALLYGELVSYLLRDV---EDVNARLEKMGYNIGQRLIERLLARSGSKRCTDLLEVLKF 57

Query: 226 IQL-GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRG 284
           I    +++  G   ++   S  G E+ LI   NP+ +FVELP + + L Y N L G++RG
Sbjct: 58  ICKDLWKMLFGKQADVLETSHDG-EYVLIDNDNPLSQFVELPPDYSGLNYLNFLCGIIRG 116

Query: 285 ACEMVQLDITSKFIQDQLKGDN-VTELRVKF 314
           A   +          D L+G   V E++ + 
Sbjct: 117 ALSSLGFPAKVTAHSDPLRGPGTVFEIKFEK 147

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  158 bits (402), Expect = 3e-48
 Identities = 59/144 (40%), Positives = 79/144 (54%), Gaps = 5/144 (3%)

Query: 17  LFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEK 76
           LF L YG LVS LL+D    EDVN +L++MGYNIG RLIE  LAR+ S RC D  E  + 
Sbjct: 1   LFALLYGELVSYLLRDV---EDVNARLEKMGYNIGQRLIERLLARSGSKRCTDLLEVLKF 57

Query: 77  IQL-GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRG 135
           I    +++  G   ++   S  G E+ LI   NP+ +FVELP + + L Y N L G++RG
Sbjct: 58  ICKDLWKMLFGKQADVLETSHDG-EYVLIDNDNPLSQFVELPPDYSGLNYLNFLCGIIRG 116

Query: 136 ACEMVQLDITSKFIQDQLKGDNVT 159
           A   +          D L+G    
Sbjct: 117 ALSSLGFPAKVTAHSDPLRGPGTV 140

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 26/141 (18%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 11  KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDF 70
           ++V        +  ++  L++    ++D   +L  +GY +GI+L+E    R ++ +    
Sbjct: 38  REVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPK---- 93

Query: 71  KETAEKIQLGFRIYLGISPNISNWSAGGDEFS-------LIFETNPML-EFVELPDNCTN 122
           +E    + +  RI+  +   +   S    E S       +I + +P+L  F+ +PD    
Sbjct: 94  REV-RILTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNG 152

Query: 123 LKYCNVLTGVLRGACEMVQLD 143
           L   +++ G+++G        
Sbjct: 153 LSCDSIVCGIIQGFLMAAGFP 173

Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
KOG3330|consensus	183		100.0
KOG3330|consensus	183		100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
KOG3315|consensus	191		100.0
PTZ00391	168	transport protein particle component (TRAPP) super	99.97
PTZ00391	168	transport protein particle component (TRAPP) super	99.97
KOG3315|consensus	191		99.96
COG5128	208	Transport protein particle (TRAPP) complex subunit	99.93
COG5128	208	Transport protein particle (TRAPP) complex subunit	99.88
KOG3316|consensus	163		98.57
KOG3316|consensus	163		98.53

>KOG3330|consensus

Probab=100.00  E-value=2e-75  Score=509.91  Aligned_cols=170  Identities=59%  Similarity=1.060  Sum_probs=166.5

Q ss_pred             chhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCC
Q psy4857         158 VTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGI  236 (327)
Q Consensus       158 ~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflGi  236 (327)
                      ++++.|+|||+|||||||+|||||||++++||+|||+||||||+|||||||||++.+||.||++|+|+| |+||||||||
T Consensus        12 ~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks~vpRC~dfretaevlak~afkmyLgi   91 (183)
T KOG3330|consen   12 KSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKSNVPRCVDFRETAEVLAKVAFKMYLGI   91 (183)
T ss_pred             HHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhcCCchhhhHHHHHHHHHHhhhheeeec
Confidence            688999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCccccCCCCCCeEEEEecCCccccceeccCCC-CCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEec
Q psy4857         237 SPNISNWSAGGDEFSLIFETNPMLEFVELPDNC-TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFI  315 (327)
Q Consensus       237 ~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~-~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~  315 (327)
                      ||++++|++++++|+|++|+|||++|||+|++. +.|||||+||||||||||||||.|+++|++|.||||+.|||||+|.
T Consensus        92 tpsitswss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~f~  171 (183)
T KOG3330|consen   92 TPSITSWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVRFL  171 (183)
T ss_pred             ccceeeecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeeeHH
Confidence            999999999999999999999999999888774 7899999999999999999999999999999999999999999999


Q ss_pred             hhccccCCCCCC
Q psy4857         316 KTIQDAIPAGED  327 (327)
Q Consensus       316 ~~~~~~~p~~~~  327 (327)
                      ++++|++|+|||
T Consensus       172 r~lkde~P~ged  183 (183)
T KOG3330|consen  172 RILKDELPAGED  183 (183)
T ss_pred             HHHhhhcCCCCC
Confidence            999999999986

>KOG3330|consensus

Probab=100.00  E-value=1.9e-68  Score=466.15  Aligned_cols=158  Identities=60%  Similarity=1.037  Sum_probs=153.5

Q ss_pred             CcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857           7 RLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL   85 (327)
Q Consensus         7 ~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~fl   85 (327)
                      ..|++|+|+|+|+||||+||+|||+|||++++||+||++||||||+|||||||||++.+||.+||+|+++| |+||||||
T Consensus        10 ~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks~vpRC~dfretaevlak~afkmyL   89 (183)
T KOG3330|consen   10 AKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKSNVPRCVDFRETAEVLAKVAFKMYL   89 (183)
T ss_pred             HHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhcCCchhhhHHHHHHHHHHhhhheee
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCCcccccCCCCCeEEEEecCCccccceeccCC-CCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCcchhhhhh
Q psy4857          86 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDN-CTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNS  164 (327)
Q Consensus        86 g~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~-~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~~tEi~~~  164 (327)
                      |+||++++|++++++|+||+|+|||++|||+|++ +++|||||+||||||||||||||.|+|+|++|.||||+.|||+++
T Consensus        90 gitpsitswss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~  169 (183)
T KOG3330|consen   90 GITPSITSWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVR  169 (183)
T ss_pred             ecccceeeecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeee
Confidence            9999999999999999999999999999987776 588999999999999999999999999999999999999999875

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=2e-37  Score=269.56  Aligned_cols=149  Identities=32%  Similarity=0.535  Sum_probs=135.1

Q ss_pred             HHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhh-cCCCCccchHHHHHHH-HHHHHHhhCCCCccccC
Q psy4857         166 LFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR-TQSTRCYDFKETAEKI-QLGFRIYLGISPNISNW  243 (327)
Q Consensus       166 lf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak-~~~~rc~~f~~t~e~I-k~~~KmflGi~a~v~~~  243 (327)
                      +|+||||+||+++++ +++.+++|++|++|||+||.||+|+++.| ...+||+++.+++++| |..||++||++++..+|
T Consensus         1 ~f~~l~~e~V~~~~~-~~~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~~   79 (152)
T PF04051_consen    1 AFALLFGEMVQYLLR-REDVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLKT   79 (152)
T ss_dssp             HHHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEEE
T ss_pred             CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            699999999988887 77999999999999999999999999998 6889999999999999 99999999999999999


Q ss_pred             CCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEech
Q psy4857         244 SAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK  316 (327)
Q Consensus       244 ~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~  316 (327)
                      +.+.++|+|+.+++|+.+||++|+++++|+|++++||||||||++++++++|++..+.++| +.+.+.|||.+
T Consensus        80 n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~-~~~~f~Ik~~~  151 (152)
T PF04051_consen   80 NHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPLNG-PQTTFQIKFEK  151 (152)
T ss_dssp             ETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCCGT-TEEEEEEEEEH
T ss_pred             cCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEeccCC-CCeEEEEEEec
Confidence            8878999999888999999999999999999999999999999999999999999998844 46777777765

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=3.1e-37  Score=268.41  Aligned_cols=145  Identities=30%  Similarity=0.522  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhh-cCCCCccchHHHHHHH-HHHHHHhhCCCCccccc
Q psy4857          17 LFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR-TQSTRCYDFKETAEKI-QLGFRIYLGISPNISNW   94 (327)
Q Consensus        17 lfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar-~~~~rc~~~~~t~e~I-~~~~K~flg~~a~v~~~   94 (327)
                      +|+|||+|||+|+++ +++.+++|++|++|||+||.||+|+++.| ...+||.++.+++.|| +..||++||++++.++|
T Consensus         1 ~f~~l~~e~V~~~~~-~~~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~~   79 (152)
T PF04051_consen    1 AFALLFGEMVQYLLR-REDVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLKT   79 (152)
T ss_dssp             HHHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEEE
T ss_pred             CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            699999999999998 67999999999999999999999999998 6889999999999999 99999999999999999


Q ss_pred             CCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCc-chhhh
Q psy4857          95 SAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDN-VTELR  162 (327)
Q Consensus        95 ~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~-~tEi~  162 (327)
                      +.+.++|+|+.+++|+.+||++|+++++|+|++++||||||||++++++++|++..+.++|+. +.+|+
T Consensus        80 n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~~f~Ik  148 (152)
T PF04051_consen   80 NHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPLNGPQTTFQIK  148 (152)
T ss_dssp             ETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCCGTTEEEEEEE
T ss_pred             cCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEeccCCCCeEEEEE
Confidence            887899999988899999999999999999999999999999999999999999999998873 44544

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>KOG3315|consensus

Probab=100.00  E-value=6.9e-33  Score=245.34  Aligned_cols=147  Identities=16%  Similarity=0.341  Sum_probs=134.2

Q ss_pred             CCCCCCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhc-CCCCccchHHHHHHH-HH
Q psy4857           2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKETAEKI-QL   79 (327)
Q Consensus         2 ~r~~~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~-~~~rc~~~~~t~e~I-~~   79 (327)
                      .|+|+++|+| ||.++||++|++||+|++.+..++.|++.+|...||+||.||+|.+..|+ +.+|.+++..++.+| ..
T Consensus        17 ~~~L~~~rtE-vslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtkilgiL~fi~~t   95 (191)
T KOG3315|consen   17 DKSLSKGRTE-VSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETKILGILQFIHST   95 (191)
T ss_pred             hhhhhccCcc-ccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            5788888987 99999999999999999999999999999999999999999998666688 889999999999999 99


Q ss_pred             HHHHhhCCCCcccc-cCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccce--eEEEEee
Q psy4857          80 GFRIYLGISPNISN-WSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQ  150 (327)
Q Consensus        80 ~~K~flg~~a~v~~-~~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~--v~~~fv~  150 (327)
                      .||.+||+.|+-++ .+++.++|+|+ |++||. .|||+|++.+.|||++|+||||+|+|+..+|+  |+||+.+
T Consensus        96 vwk~Lfgk~ad~LEka~d~~~tYmii-d~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTAh~~P  169 (191)
T KOG3315|consen   96 VWKYLFGKEADKLEKANDDDRTYMII-DKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTAHWHP  169 (191)
T ss_pred             HHHHHhcchHHHHHhcccccceEEEE-cCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceeeeecC
Confidence            99999999996555 67789999666 999999 49999999999999999999999999996665  5588886

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=99.97  E-value=1.6e-30  Score=231.36  Aligned_cols=140  Identities=19%  Similarity=0.349  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHhhCCCC
Q psy4857          13 VNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIYLGISP   89 (327)
Q Consensus        13 vn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLa-r~-~~~rc~~~~~t~e~I-~~~~K~flg~~a   89 (327)
                      ||+++|+++|+|||+|.+++.++++|++++|++|||+||.||+| .+. |+ ..+|.++..+++.|| +..||.+||+++
T Consensus         1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE-~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~a   79 (168)
T PTZ00391          1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNE-LLPYREKNQKRETKILSILTFISKHVWKYLFGHSS   79 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHH-HHHHhccCCCccchHHHHHHHHHHHHHHHHhCchh
Confidence            68999999999999999988899999999999999999999997 555 76 578999999999999 999999999999


Q ss_pred             cccccCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccceeE--EEEeeeccC
Q psy4857          90 NISNWSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLDIT--SKFIQDQLK  154 (327)
Q Consensus        90 ~v~~~~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~--~~fv~d~l~  154 (327)
                      +.++.+++.++|+|+ |++|+. .|+++|+++++++|++|.||||||||+.++++++  ||++++.-.
T Consensus        80 D~Lkt~d~~~~Y~i~-Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~  146 (168)
T PTZ00391         80 DLLKSQDSDDEYMIN-DKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPK  146 (168)
T ss_pred             hhhcccCCCCeEEEE-eCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCC
Confidence            988555678999776 999998 5999999999999999999999999999666655  777665543

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=99.97  E-value=1e-29  Score=226.29  Aligned_cols=152  Identities=19%  Similarity=0.357  Sum_probs=137.3

Q ss_pred             hhhHHhhhHHHHHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHhhCCCC
Q psy4857         163 NSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIYLGISP  238 (327)
Q Consensus       163 ~~elf~ltYGalV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLa-k~-~~~rc~~f~~t~e~I-k~~~KmflGi~a  238 (327)
                      +.+.|+++|.+|| |++++.. +++|++++|++|||+||.||+| .+. |+ +.+|.++..+++.|| +..||.+||+++
T Consensus         2 slsafafLf~EmV-~y~~~~~~~~~ele~rL~~~G~~VG~rllE-~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~a   79 (168)
T PTZ00391          2 SLSSFAFLFSEIV-QYCLSKSKRGYRLEDKLHEMGLRVGYKLNE-LLPYREKNQKRETKILSILTFISKHVWKYLFGHSS   79 (168)
T ss_pred             CHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHhHHHhHHHHH-HHHHhccCCCccchHHHHHHHHHHHHHHHHhCchh
Confidence            6789999999999 8888887 8899999999999999999995 888 66 578999999999999 999999999999


Q ss_pred             ccccCCCCCCeEEEEecCCcccc-ceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCCceEEEEEec
Q psy4857         239 NISNWSAGGDEFSLIFETNPMLE-FVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDNVTELRVKFI  315 (327)
Q Consensus       239 ~v~~~~~~~~ef~l~~d~NPL~~-FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~~tei~ik~~  315 (327)
                      +..+.+++.++|+|+ |++|+.. |+++|+++++++|+++.||||||||..++++  |+||++++.-. ..+|+|.|||.
T Consensus        80 D~Lkt~d~~~~Y~i~-Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~-~~~t~~likf~  157 (168)
T PTZ00391         80 DLLKSQDSDDEYMIN-DKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPK-NFSTTILIKFY  157 (168)
T ss_pred             hhhcccCCCCeEEEE-eCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCC-CCceEEEEEec
Confidence            888666778999877 9999995 9999999999999999999999999999666  99999876654 55999999999


Q ss_pred             hhc
Q psy4857         316 KTI  318 (327)
Q Consensus       316 ~~~  318 (327)
                      +..
T Consensus       158 ~~v  160 (168)
T PTZ00391        158 PEV  160 (168)
T ss_pred             HHH
Confidence            764

>KOG3315|consensus

Probab=99.96  E-value=4.7e-29  Score=221.04  Aligned_cols=151  Identities=21%  Similarity=0.450  Sum_probs=138.7

Q ss_pred             chhhhhhhHHhhhHHHHHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHh
Q psy4857         158 VTELRNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIY  233 (327)
Q Consensus       158 ~tEi~~~elf~ltYGalV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLa-k~-~~~rc~~f~~t~e~I-k~~~Kmf  233 (327)
                      ++|+ +.+.||+.|++|| |+++... ++.|++.+|...||+||+||+| .+. |+ +.+|.+++.+++.+| ...||.+
T Consensus        24 rtEv-slS~fA~Lfsemi-qy~q~qv~tv~d~e~kL~~~G~~VG~rlle-l~~~rEr~~kREtkilgiL~fi~~tvwk~L  100 (191)
T KOG3315|consen   24 RTEV-SLSAFAFLFSEMI-QYLQSQVFTVADLETKLADYGYQVGIRLLE-LLNFRERGQKRETKILGILQFIHSTVWKYL  100 (191)
T ss_pred             Cccc-cHHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHhHHHHH-HHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            4788 8999999999999 9999995 8999999999999999999996 666 87 889999999999999 9999999


Q ss_pred             hCCCC-ccccCCCCCCeEEEEecCCcccc-ceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCCceE
Q psy4857         234 LGISP-NISNWSAGGDEFSLIFETNPMLE-FVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDNVTE  309 (327)
Q Consensus       234 lGi~a-~v~~~~~~~~ef~l~~d~NPL~~-FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~~te  309 (327)
                      ||+.| .+.+.++++++|+|+ |++||.+ |+++|++.+.|||++++||||.|+|+..+++  |||||.+   .|   |.
T Consensus       101 fgk~ad~LEka~d~~~tYmii-d~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTAh~~P---~g---t~  173 (191)
T KOG3315|consen  101 FGKEADKLEKANDDDRTYMII-DKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTAHWHP---EG---TT  173 (191)
T ss_pred             hcchHHHHHhcccccceEEEE-cCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceeeeecC---CC---Ce
Confidence            99999 566688999999766 9999995 9999999999999999999999999999887  9999998   33   99


Q ss_pred             EEEEechhc
Q psy4857         310 LRVKFIKTI  318 (327)
Q Consensus       310 i~ik~~~~~  318 (327)
                      ++|||.+.+
T Consensus       174 ~~IkF~~~V  182 (191)
T KOG3315|consen  174 YLIKFDESV  182 (191)
T ss_pred             EEEEecHHH
Confidence            999998754

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.93  E-value=1e-25  Score=199.88  Aligned_cols=146  Identities=16%  Similarity=0.326  Sum_probs=129.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhc-CCCCccchHHHHHHH-HHHHHHhhCCC
Q psy4857          11 KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKETAEKI-QLGFRIYLGIS   88 (327)
Q Consensus        11 ~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~-~~~rc~~~~~t~e~I-~~~~K~flg~~   88 (327)
                      ..||.+.+||+|.+|++|+......+.|.|.+|...||+||+||+|....|. +.+|..++..++++| ...|+++||..
T Consensus        38 ~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~ih~~lwsylf~~~  117 (208)
T COG5128          38 REVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQRIHFDLWSYLFGDS  117 (208)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHHHHHHHHHHHhccc
Confidence            3499999999999999999999999999999999999999999997555566 788999999999999 99999999999


Q ss_pred             Ccccc-cCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCc
Q psy4857          89 PNISN-WSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDN  157 (327)
Q Consensus        89 a~v~~-~~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~  157 (327)
                      ++..+ ..+.++||||+ |+|||- +||++|++..+|+|.+++||||.|+|...||+++|+--+..+.+..
T Consensus       118 ~d~leKs~e~d~eYmiv-Dn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~~~p  187 (208)
T COG5128         118 DDRLEKSREVDREYMIV-DNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSENLP  187 (208)
T ss_pred             hHHHHHhhhcCceeEEe-cCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCcccCCC
Confidence            96655 56668999766 999988 6999999999999999999999999999998888665455555543

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.88  E-value=1.7e-22  Score=179.51  Aligned_cols=152  Identities=16%  Similarity=0.370  Sum_probs=133.9

Q ss_pred             hhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHhhCCCC-
Q psy4857         163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIYLGISP-  238 (327)
Q Consensus       163 ~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLa-k~-~~~rc~~f~~t~e~I-k~~~KmflGi~a-  238 (327)
                      +.+.||+.|.+++.||.+....+.+.+.+|...||+||+||+| .+. |. +.+|..++.++++.| ...|+.+||.++ 
T Consensus        41 ~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlE-L~nfr~rnpkre~rIl~iLq~ih~~lwsylf~~~~d  119 (208)
T COG5128          41 PLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLE-LCNFRRRNPKREVRILTILQRIHFDLWSYLFGDSDD  119 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHH-HHHHhhhCccchhhHHHHHHHHHHHHHHHHhccchH
Confidence            6678999999999777777778999999999999999999995 777 55 788999999999999 999999999999 


Q ss_pred             ccccCCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCC-ceEEEEEe
Q psy4857         239 NISNWSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDN-VTELRVKF  314 (327)
Q Consensus       239 ~v~~~~~~~~ef~l~~d~NPL~-~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~-~tei~ik~  314 (327)
                      ++.+..+.++||+|+ |+|||- .|+++|++..+|+|..++||+|.|+|..++++  |+||  +..+.+.+ +|.++|++
T Consensus       120 ~leKs~e~d~eYmiv-Dn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh--~~P~~~~p~Rtv~lI~~  196 (208)
T COG5128         120 RLEKSREVDREYMIV-DNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAH--PEPSENLPNRTVFLIRI  196 (208)
T ss_pred             HHHHhhhcCceeEEe-cCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceec--cCcccCCCcceEEEEEe
Confidence            566688888999777 999998 69999999999999999999999999999998  5666  44455554 89999999


Q ss_pred             chhc
Q psy4857         315 IKTI  318 (327)
Q Consensus       315 ~~~~  318 (327)
                      .+..
T Consensus       197 d~~v  200 (208)
T COG5128         197 DDLV  200 (208)
T ss_pred             cHHH
Confidence            8654

>KOG3316|consensus

Probab=98.57  E-value=2.6e-07  Score=81.66  Aligned_cols=125  Identities=16%  Similarity=0.217  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHhcC-C---------HHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857          17 LFTLTYGALVSQLLKDYD-N---------VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL   85 (327)
Q Consensus        17 lfaltyg~lV~ql~~d~e-~---------~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~fl   85 (327)
                      +|-++--+||... .+++ |         -.....+|+.|||.||.+|+| -|.|+.. |..+-.|+..|| |..|+..|
T Consensus         6 ~f~~Lh~EmV~~~-~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~E-rl~~e~~-rf~deLeimKFiCkDfW~~VF   82 (163)
T KOG3316|consen    6 LFDFLHNEMVHTA-LRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSE-RLTRERN-RFKDELEIMKFICKDFWSIVF   82 (163)
T ss_pred             HHHHHHHHHHHHH-HHhcchhhcccccccchHHHHHHHHhhhHHHHHHHH-HHhhhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence            4888999999554 4552 2         133677999999999999996 6666533 777778889999 99999999


Q ss_pred             CCCCcccccCCCCCeEEEEecCCccccceeccCC--C--CCCchhhhhHHHHHhhhhcccceeEEE
Q psy4857          86 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDN--C--TNLKYCNVLTGVLRGACEMVQLDITSK  147 (327)
Q Consensus        86 g~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~--~--~~L~ysn~lcGvirGaLe~v~~~v~~~  147 (327)
                      +++-|.+. +...-.|.+. |+ -..-+-+.|+.  +  .---|-+|-||+|||+|-.++++..|.
T Consensus        83 ~KQiDNLr-TNhrG~yVlq-D~-~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVt  145 (163)
T KOG3316|consen   83 KKQIDNLR-TNHRGTYVLQ-DN-KFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVT  145 (163)
T ss_pred             hhhhhhcc-ccCCceEEEe-cC-ceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEe
Confidence            99987654 4445567565 33 12222233322  1  223788999999999999998887643

>KOG3316|consensus

Probab=98.53  E-value=3.7e-07  Score=80.70  Aligned_cols=127  Identities=17%  Similarity=0.241  Sum_probs=90.0

Q ss_pred             HHhhhHHHHHHHHHhhcC-C-------H--HHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857         166 LFTLTYGALVSQLLKDYD-N-------V--EDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL  234 (327)
Q Consensus       166 lf~ltYGalV~Ql~~d~e-~-------~--~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~Kmfl  234 (327)
                      +|-++--+|| .++.++| |       .  ...-.+|+.|||.||.+|+| -|.++.. |..+-.|+..|| |.-|+..|
T Consensus         6 ~f~~Lh~EmV-~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~E-rl~~e~~-rf~deLeimKFiCkDfW~~VF   82 (163)
T KOG3316|consen    6 LFDFLHNEMV-HTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSE-RLTRERN-RFKDELEIMKFICKDFWSIVF   82 (163)
T ss_pred             HHHHHHHHHH-HHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHH-HHhhhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence            4667777788 5555663 2       1  23677999999999999996 7776544 888888999999 99999999


Q ss_pred             CCCCccccCCCCCCeEEEEecCCccccceeccCCC----CCCchhhhhHHHHHhhhhcccce--EEEEEe
Q psy4857         235 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC----TNLKYCNVLTGVLRGACEMVQLD--ITSKFI  298 (327)
Q Consensus       235 Gi~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~----~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv  298 (327)
                      +++-+...-+. .-.|.|.  +|-..-+-+.|+--    .--.|-++-||+|||+|..++++  |+|.+.
T Consensus        83 ~KQiDNLrTNh-rG~yVlq--D~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~  149 (163)
T KOG3316|consen   83 KKQIDNLRTNH-RGTYVLQ--DNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS  149 (163)
T ss_pred             hhhhhhccccC-CceEEEe--cCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC
Confidence            99987766433 3446444  33333333444321    22378899999999999999887  666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
2j3r_A	182	The Crystal Structure Of The Bet3-Trs31 Heterodimer		3e-64
1wc8_A	180	The Crystal Structure Of Mouse Bet3p Length = 180		4e-64
1sz7_A	200	Crystal Structure Of Human Bet3 Length = 200		1e-63
2cfh_A	194	Structure Of The Bet3-Tpc6b Core Of Trapp Length =		2e-63
3kxc_A	194	Mutant Transport Protein Length = 194		1e-62
2c0j_A	161	Crystal Structure Of The Bet3-Trs33 Heterodimer Len		6e-61
1wc9_A	165	The Crystal Structure Of Truncated Mouse Bet3p Leng		2e-60
2pwn_A	192	Crystal Structure Of Bet3 Homolog (13277653) From M		1e-57
2pwn_A	192	Crystal Structure Of Bet3 Homolog (13277653) From M		2e-57
3cue_D	193	Crystal Structure Of A Trapp Subassembly Activating		4e-45

>pdb|2J3R|A Chain A, The Crystal Structure Of The Bet3-Trs31 Heterodimer. Length = 182

Iteration: 1
 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 17  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 76
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 77  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 136
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 137 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 182

>pdb|1WC8|A Chain A, The Crystal Structure Of Mouse Bet3p Length = 180

Iteration: 1
 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 15  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 75  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180

>pdb|1SZ7|A Chain A, Crystal Structure Of Human Bet3 Length = 200

Iteration: 1
 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 24  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 83
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 84  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 143
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 144 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 189

>pdb|2CFH|A Chain A, Structure Of The Bet3-Tpc6b Core Of Trapp Length = 194

Iteration: 1
 Score =  239 bits (609), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 29  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 88
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 89  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 194

>pdb|3KXC|A Chain A, Mutant Transport Protein Length = 194

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+   R +DF+ET
Sbjct: 29  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRAHDFRET 88
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 89  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 194

>pdb|2C0J|A Chain A, Crystal Structure Of The Bet3-Trs33 Heterodimer Length = 161

Iteration: 1
 Score =  231 bits (588), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 136/159 (85%), Gaps = 1/159 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 1   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 60
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 61  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 120
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQD 320
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D
Sbjct: 121 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 159

>pdb|1WC9|A Chain A, The Crystal Structure Of Truncated Mouse Bet3p Length = 165

Iteration: 1
 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 135/158 (85%), Gaps = 1/158 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 8   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 67
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 68  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 127
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQ 319
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+
Sbjct: 128 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIE 165

>pdb|2PWN|A Chain A, Crystal Structure Of Bet3 Homolog (13277653) From Mus Musculus At 2.04 A Resolution Length = 192

Iteration: 1
 Score =  220 bits (560), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/161 (66%), Positives = 131/161 (81%), Gaps = 2/161 (1%)
Query: 2   ARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLA 60
           +RQ NR  +SKK +SELFTLTYGALV+QL KDY+N EDVNKQLDR GYNIG+RLIEDFLA
Sbjct: 14  SRQANRGTESKKXSSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLA 73
Query: 61  RTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN 119
           R+   RC+DF+ETA+ I ++ F+ YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN
Sbjct: 74  RSNVGRCHDFRETADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDN 133
Query: 120 CTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTE 160
            + L Y N+L GVLRGA E VQ  + +KF+QD LKGD VTE
Sbjct: 134 HSALIYSNLLCGVLRGALEXVQXAVEAKFVQDTLKGDGVTE 174

>pdb|2PWN|A Chain A, Crystal Structure Of Bet3 Homolog (13277653) From Mus Musculus At 2.04 A Resolution Length = 192

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 137/166 (82%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDR GYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 27  SSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLARSNVGRCHDFRET 86
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F+ YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 87  ADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 146
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA E VQ  + +KF+QD LKGD VTE+R +FI+ I+D +PAGE+
Sbjct: 147 LRGALEXVQXAVEAKFVQDTLKGDGVTEIRXRFIRRIEDNLPAGEE 192

>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 193

Iteration: 1
 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 3/174 (1%)
Query: 157 NVTELRNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTR 215
           N TE  N+ELFTLTYG++V+QL +DY+ +   VN  L  MGYNIG RLIEDFLART   R
Sbjct: 20  NKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPR 79
Query: 216 CYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLK 273
           C +  +T+E + +  F+I+L I+PNI+NWS   D FSLI + NP+ +FVELP D   +L 
Sbjct: 80  CENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLW 139
Query: 274 YCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           Y N+L GVL+G+ EMVQLD    F+ D L+GD+ TE++VK  + ++D IP GED
Sbjct: 140 YSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
3cue_D	193	Transport protein particle 22 kDa subunit; membran	9e-82
3cue_D	193	Transport protein particle 22 kDa subunit; membran	6e-76
1sz7_A	200	BET3 homolog, trafficking protein particle complex	2e-69
1sz7_A	200	BET3 homolog, trafficking protein particle complex	1e-63
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	8e-24
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	2e-22
2bjn_A	160	TPC6, trafficking protein particle complex subunit	3e-09
2bjn_A	160	TPC6, trafficking protein particle complex subunit	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	3e-04

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193

 Score =  245 bits (626), Expect = 9e-82
 Identities = 89/168 (52%), Positives = 120/168 (71%), Gaps = 3/168 (1%)

Query: 163 NSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKE 221
           N+ELFTLTYG++V+QL +DY+ +   VN  L  MGYNIG RLIEDFLART   RC +  +
Sbjct: 26  NTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVK 85

Query: 222 TAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLKYCNVLT 279
           T+E + +  F+I+L I+PNI+NWS   D FSLI + NP+ +FVELP D   +L Y N+L 
Sbjct: 86  TSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILC 145

Query: 280 GVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           GVL+G+ EMVQLD    F+ D L+GD+ TE++VK  + ++D IP GED
Sbjct: 146 GVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193

 Score =  230 bits (588), Expect = 6e-76
 Identities = 83/165 (50%), Positives = 116/165 (70%), Gaps = 3/165 (1%)

Query: 1   MARQGNRLDSKKVNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFL 59
           M  +  +  ++K+N+ELFTLTYG++V+QL +DY+ +   VN  L  MGYNIG RLIEDFL
Sbjct: 13  MGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFL 72

Query: 60  ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP- 117
           ART   RC +  +T+E + +  F+I+L I+PNI+NWS   D FSLI + NP+ +FVELP 
Sbjct: 73  ARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPM 132

Query: 118 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
           D   +L Y N+L GVL+G+ EMVQLD    F+ D L+GD+ TE++
Sbjct: 133 DAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIK 177

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  214 bits (546), Expect = 2e-69
 Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 24  SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 83

Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 84  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 143

Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 144 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 189

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  199 bits (507), Expect = 1e-63
 Identities = 108/162 (66%), Positives = 138/162 (85%), Gaps = 2/162 (1%)

Query: 3   RQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR 61
           RQ NR  +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR
Sbjct: 12  RQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLAR 71

Query: 62  TQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC 120
           +   RC+DF+ETA+ I ++ F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN 
Sbjct: 72  SNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNH 131

Query: 121 TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
           ++L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 132 SSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 173

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score = 95.4 bits (237), Expect = 8e-24
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 10  SKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST-RCY 68
             +V+   F L +  +V        +V ++  +L  MG  +G  L++  + R ++  R  
Sbjct: 21  KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 80

Query: 69  DFKETAEKIQL-GFRIYLGISPNISNWSAGGDEFSLIFETNPM-LEFVELPDNCTNLKYC 126
                   I++  ++   G   +    +   D+   I E  P+   ++ +P   + L   
Sbjct: 81  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 140

Query: 127 NVLTGVLRGACEMVQL 142
               G++         
Sbjct: 141 AFTGGIVEAILTHSGF 156

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score = 91.9 bits (228), Expect = 2e-22
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 3/132 (2%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST-RCYDFKE 221
           +   F L +  +V        +V ++  +L  MG  +G  L++  + R ++  R      
Sbjct: 25  SVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLN 84

Query: 222 TAEKIQL-GFRIYLGISPNISNWSAGGDEFSLIFETNPM-LEFVELPDNCTNLKYCNVLT 279
               I++  ++   G   +    +   D+   I E  P+   ++ +P   + L       
Sbjct: 85  ILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTG 144

Query: 280 GVLRGACEMVQL 291
           G++         
Sbjct: 145 GIVEAILTHSGF 156

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 13  VNSELFTLTYGALVSQLLKDYDNVED----VNKQLDRMGYNIGIRLIEDFLARTQSTRCY 68
            +  LF L +  +VS + K  +  E        +L+ MG+ +G  LIE F   T   R  
Sbjct: 4   ADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDT--ARFK 61

Query: 69  DFKETAEKIQLGF-RIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL--KY 125
           D  +  + I   F         +    +  G  + L      +L  +           KY
Sbjct: 62  DELDIMKFICKDFWTTVFKKQIDNLRTNHQG-IYVLQDNKFRLLTQMSAGKQYLEHASKY 120

Query: 126 CNVLTGVLRGACE 138
                G++RG   
Sbjct: 121 LAFTCGLIRGGLS 133

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVED----VNKQLDRMGYNIGIRLIEDFLARTQSTRCYD 218
           +  LF L +  +VS + K  +  E        +L+ MG+ +G  LIE F   T   R  D
Sbjct: 5   DEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDT--ARFKD 62

Query: 219 FKETAEKIQLGF-RIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL--KYC 275
             +  + I   F         +    +  G  + L      +L  +           KY 
Sbjct: 63  ELDIMKFICKDFWTTVFKKQIDNLRTNHQG-IYVLQDNKFRLLTQMSAGKQYLEHASKYL 121

Query: 276 NVLTGVLRGACE 287
               G++RG   
Sbjct: 122 AFTCGLIRGGLS 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 5e-08
 Identities = 57/346 (16%), Positives = 101/346 (29%), Gaps = 115/346 (33%)

Query: 20  LTYGALVSQLL----KDYD--NVEDV------NKQLD---RMGYNI-GIRLIEDFLARTQ 63
             Y  ++S        ++D  +V+D+       +++D        + G   +   L   Q
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 64  STRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTN- 122
                 F E   +I   F +        S       + S+         ++E  D   N 
Sbjct: 76  EEMVQKFVEEVLRINYKF-LM-------SPIKTEQRQPSM-----MTRMYIEQRDRLYND 122

Query: 123 ----LKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYG------ 172
                KY      V R   +             +L+   + ELR ++   +  G      
Sbjct: 123 NQVFAKY-----NVSRL--QPYL----------KLR-QALLELRPAKNVLI-DGVLGSGK 163

Query: 173 -ALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDF---LARTQSTRCYDFKETAEKIQL 228
             +   +   Y       K   +M + I       F   L    S          E +Q 
Sbjct: 164 TWVALDVCLSY-------KVQCKMDFKI-------FWLNLKNCNSPE-----TVLEMLQ- 203

Query: 229 GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL----KYCNVLTGVLR- 283
             ++   I P   NW++  D  S     N  L    +      L     Y N L  VL  
Sbjct: 204 --KLLYQIDP---NWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252

Query: 284 -----------GACEMVQLDITSKFIQ--DQLKGDNVTELRVKFIK 316
                       +C+++   +T++F Q  D L     T + +    
Sbjct: 253 VQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHS 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 68/284 (23%)

Query: 50  IGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNP 109
           I    I D LA   + +  +  +    I+    +   + P          E+  +F+   
Sbjct: 333 IA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEP---------AEYRKMFD--- 376

Query: 110 MLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTEL--RNSELF 167
                  P +       ++ T +L     ++  D+    +   +   +   L  +  +  
Sbjct: 377 --RLSVFPPS------AHIPTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 168 TLTYGALVSQLLKDYDNVEDVNKQL-DRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI 226
           T++  ++  +L    +N   +++ + D   YNI               + +D  +     
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDH--YNI--------------PKTFDSDDLIPPY 468

Query: 227 QLGFRIYLGISPNISNWSAGG--DEFSLIFETNPMLEFVE--LPDNCTNLKYCNVLTGVL 282
              +  Y  I  ++ N         F ++F  +    F+E  +  + T       +   L
Sbjct: 469 LDQY-FYSHIGHHLKNIEHPERMTLFRMVF-LD--FRFLEQKIRHDSTAWNASGSILNTL 524

Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRV----KFIKTIQDAI 322
           +      QL     +I D    D   E  V     F+  I++ +
Sbjct: 525 Q------QLKFYKPYICDN---DPKYERLVNAILDFLPKIEENL 559

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 53/305 (17%), Positives = 107/305 (35%), Gaps = 117/305 (38%)

Query: 24  ALVSQLLKD----YDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQL 79
           +++++ ++D    +DN + VN   D++       +IE            +  E AE  ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC--DKL-----TTIIE---------SSLNVLEPAEYRKM 374

Query: 80  GFRIYLGISP---NISN------WSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLT 130
            F   L + P   +I        W         + +++ M+   +L       KY   L 
Sbjct: 375 -FD-RLSVFPPSAHIPTILLSLIWFD-------VIKSDVMVVVNKL------HKYS--L- 416

Query: 131 GVLRGACEM------VQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQ--LLKDY 182
            V +   E       + L++       ++K +N   L  S         +V    + K +
Sbjct: 417 -VEKQPKESTISIPSIYLEL-------KVKLENEYALHRS---------IVDHYNIPKTF 459

Query: 183 DNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFK--ETAEKIQLGFR-IYLG---- 235
           D+ + +   LD   Y          +        +  K  E  E++ L FR ++L     
Sbjct: 460 DSDDLIPPYLD--QY------FYSHIG-------HHLKNIEHPERMTL-FRMVFLDFRFL 503

Query: 236 ---ISPNISNWSAGGDEFSL----------IFETNP--------MLEFVELPD-NCTNLK 273
              I  + + W+A G   +           I + +P        +L+F+   + N    K
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 274 YCNVL 278
           Y ++L
Sbjct: 564 YTDLL 568

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 15/136 (11%)

Query: 13  VNSELFTLTYGALVSQLLKDYDNVEDVNKQ-----LDRMGYNIGIRLIEDFLARTQSTRC 67
            ++ LF   +  +V++L     +     ++     L+ MG+ +G  L E           
Sbjct: 3   ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERL-----PRET 57

Query: 68  YDFKETAEKIQL----GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL 123
             F+E  + ++      +        +    +  G           +L            
Sbjct: 58  LAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGLQYLEEA 117

Query: 124 KYCNVLT-GVLRGACE 138
                 T G+LRGA  
Sbjct: 118 PKFLAFTCGLLRGALY 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
2kii_A	181	Putative uncharacterized protein; H-NOX, unknown f	91.18
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	89.63
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	86.68
3tfg_A	189	ALR2278 protein; heme-based sensor domain, GAS bin	83.26

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-57  Score=411.45  Aligned_cols=170  Identities=53%  Similarity=0.899  Sum_probs=165.4

Q ss_pred             chhhhhhhHHhhhHHHHHHHHHhhcCC-HHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857         158 VTELRNSELFTLTYGALVSQLLKDYDN-VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG  235 (327)
Q Consensus       158 ~tEi~~~elf~ltYGalV~Ql~~d~e~-~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflG  235 (327)
                      +++.++.|+|+||||+||+||++|+++ ++++|+||++||||||.||+|+|++|++.+||+++++++++| |++||||||
T Consensus        21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le~l~fI~k~~Wk~lfg  100 (193)
T 3cue_D           21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFLN  100 (193)
T ss_dssp             SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHSS
T ss_pred             chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhC
Confidence            466779999999999999999999995 999999999999999999999999999999999999999999 999999999


Q ss_pred             CCCccccCCCCCCeEEEEecCCccccceeccCCC-CCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEe
Q psy4857         236 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC-TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKF  314 (327)
Q Consensus       236 i~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~-~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~  314 (327)
                      ++|++.+|++++++|+|++|+|||++|||+|+++ +.|||+|++||||||||+|++|+|+|||++|+++|+++|+|+|||
T Consensus       101 k~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~d~l~g~~~t~~~Ikf  180 (193)
T 3cue_D          101 ITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKL  180 (193)
T ss_dssp             CCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECCCSSSSSSCBCEEEEC
T ss_pred             CCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEeeccCCCCCCEEEEEEE
Confidence            9999999999999999988999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             chhccccCCCCCC
Q psy4857         315 IKTIQDAIPAGED  327 (327)
Q Consensus       315 ~~~~~~~~p~~~~  327 (327)
                      .++++|++|++||
T Consensus       181 ~~~v~d~~~~~~~  193 (193)
T 3cue_D          181 NRILKDEIPIGED  193 (193)
T ss_dssp             CCCCSCCCCCTTC
T ss_pred             hhhhhcccCCCCC
Confidence            9999999999997

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=2.1e-57  Score=411.98  Aligned_cols=170  Identities=64%  Similarity=1.105  Sum_probs=155.9

Q ss_pred             chhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCC
Q psy4857         158 VTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGI  236 (327)
Q Consensus       158 ~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflGi  236 (327)
                      +++.++.|+|+||||+||+|+++|+++++++|+||++||||||.||+|+|++|++.+||+++++|+++| |++||||||+
T Consensus        19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~~Wk~lFgk   98 (200)
T 1sz7_A           19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGI   98 (200)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHTHHHHHHSC
T ss_pred             ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence            355679999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCccccCCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEech
Q psy4857         237 SPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK  316 (327)
Q Consensus       237 ~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~  316 (327)
                      +|++++|++++++|+|++|+|||++|||+|++++.|||+|++||||||||+|++|+|+|||++|+|+|+++|+|+|||.+
T Consensus        99 ~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~Ikf~~  178 (200)
T 1sz7_A           99 TPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIR  178 (200)
T ss_dssp             CCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEEEEEE
T ss_pred             CCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEEEEEhh
Confidence            99999999999999998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCCCCCC
Q psy4857         317 TIQDAIPAGED  327 (327)
Q Consensus       317 ~~~~~~p~~~~  327 (327)
                      .++|++|++||
T Consensus       179 ~v~~~~~~~~~  189 (200)
T 1sz7_A          179 RIEDNLPAGEE  189 (200)
T ss_dssp             EC---------
T ss_pred             hhhhccCCCcc
Confidence            99999999986

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=4.1e-54  Score=390.41  Aligned_cols=163  Identities=65%  Similarity=1.085  Sum_probs=150.3

Q ss_pred             CCCC-CCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HH
Q psy4857           2 ARQG-NRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QL   79 (327)
Q Consensus         2 ~r~~-~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~   79 (327)
                      ||+. +++|.+|||+|+|+|||||||+|+++|+++++++|+||++||||||.||+|+|++|++.+||.+++++++|| |+
T Consensus        11 ~~~~~~~~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~   90 (200)
T 1sz7_A           11 SRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKV   90 (200)
T ss_dssp             -----------CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHT
T ss_pred             hhhhhhhcccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHH
Confidence            4554 457888999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhCCCCcccccCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCcch
Q psy4857          80 GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVT  159 (327)
Q Consensus        80 ~~K~flg~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~~t  159 (327)
                      +||+|||++|++++|++++++|+|++|+|||++|||+|+++++|||+||+||||||||+|++|+|+|||++|.|+|+++|
T Consensus        91 ~Wk~lFgk~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t  170 (200)
T 1sz7_A           91 AFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVT  170 (200)
T ss_dssp             HHHHHHSCCCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSE
T ss_pred             HHHHHhCCCCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCE
Confidence            99999999999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhh
Q psy4857         160 ELRNS  164 (327)
Q Consensus       160 Ei~~~  164 (327)
                      +++++
T Consensus       171 ~~~Ik  175 (200)
T 1sz7_A          171 EIRMR  175 (200)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98765

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-54  Score=387.89  Aligned_cols=157  Identities=52%  Similarity=0.893  Sum_probs=152.0

Q ss_pred             cCchhhHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857           8 LDSKKVNSELFTLTYGALVSQLLKDYDN-VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL   85 (327)
Q Consensus         8 ~~~~kvn~elfaltyg~lV~ql~~d~e~-~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~fl   85 (327)
                      ++.+|||+|+|+|||||||+|+++|+++ ++++|+||++||||||.||+|+|++|++.+||.+++++++|| +++||+||
T Consensus        20 ~~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le~l~fI~k~~Wk~lf   99 (193)
T 3cue_D           20 NKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFL   99 (193)
T ss_dssp             SSSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             cchhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHh
Confidence            3788999999999999999999999975 999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCCcccccCCCCCeEEEEecCCccccceeccCCC-CCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCcchhhhhh
Q psy4857          86 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC-TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNS  164 (327)
Q Consensus        86 g~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~-~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~~tEi~~~  164 (327)
                      |++|++++|++++++|+|++|+|||++|||+|+++ ++|||+||+||||||||+|+||+|+|||++|.|+|+++|+++++
T Consensus       100 gk~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~d~l~g~~~t~~~Ik  179 (193)
T 3cue_D          100 NITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVK  179 (193)
T ss_dssp             SCCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECCCSSSSSSCBCEEEE
T ss_pred             CCCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEeeccCCCCCCEEEEEE
Confidence            99999999999999999989999999999999999 99999999999999999999999999999999999999998765

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=3.2e-47  Score=342.35  Aligned_cols=156  Identities=15%  Similarity=0.247  Sum_probs=135.3

Q ss_pred             CCCCCCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcC-CCCccchHHHHHHH-HH
Q psy4857           2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQ-STRCYDFKETAEKI-QL   79 (327)
Q Consensus         2 ~r~~~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~-~~rc~~~~~t~e~I-~~   79 (327)
                      .||++|++ ++||+|+|+|||||||+|+++++++++|+|+||++||||||.||+|+|++|++ .+||++++++++|| |.
T Consensus        14 ~~~l~~~~-~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~fI~k~   92 (188)
T 2j3w_B           14 ERSLTRPK-TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVN   92 (188)
T ss_dssp             -------C-CEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTH
T ss_pred             cCccccch-hHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHHHHHH
Confidence            58899888 56999999999999999888888999999999999999999999999999986 59999999999999 99


Q ss_pred             HHHHhhCCCCccccc-CCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCc
Q psy4857          80 GFRIYLGISPNISNW-SAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDN  157 (327)
Q Consensus        80 ~~K~flg~~a~v~~~-~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~  157 (327)
                      +||+|||++|+.++| +++.++|+| +|+|||. +|||+|+++++|||+||+||||||||+|+||+++|++..     ++
T Consensus        93 ~Wk~lfgk~~d~L~~st~~~~~y~i-~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~-----~~  166 (188)
T 2j3w_B           93 VWKALFGKEADKLEQANDDDKTYYI-IEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-----HK  166 (188)
T ss_dssp             HHHHHHSSCCSEEEEETTEEEEEEE-EESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-----SS
T ss_pred             HHHHHhCCCccccccccCCCCEEEE-EcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe-----CC
Confidence            999999999999999 666788866 6999999 699999999999999999999999999999987755444     55


Q ss_pred             chhhhhh
Q psy4857         158 VTELRNS  164 (327)
Q Consensus       158 ~tEi~~~  164 (327)
                      .|+++++
T Consensus       167 ~t~f~Ik  173 (188)
T 2j3w_B          167 GTTLMIK  173 (188)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            6776543

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=1.4e-45  Score=331.68  Aligned_cols=151  Identities=15%  Similarity=0.299  Sum_probs=136.9

Q ss_pred             hhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcC-CCCccchHHHHHHH-HHHHHHhhCCC
Q psy4857         160 ELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQ-STRCYDFKETAEKI-QLGFRIYLGIS  237 (327)
Q Consensus       160 Ei~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~-~~rc~~f~~t~e~I-k~~~KmflGi~  237 (327)
                      +.++.|+|+||||+||+|+.++.++++|+|+||++||||||.||+|+|++|++ .+||+++++++++| |++||||||++
T Consensus        22 ~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~fI~k~~Wk~lfgk~  101 (188)
T 2j3w_B           22 TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKE  101 (188)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSSC
T ss_pred             hHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence            44599999999999995555555799999999999999999999999999986 59999999999999 99999999999


Q ss_pred             CccccC-CCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCCceEEEEE
Q psy4857         238 PNISNW-SAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDNVTELRVK  313 (327)
Q Consensus       238 a~v~~~-~~~~~ef~l~~d~NPL~-~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~~tei~ik  313 (327)
                      |++.+| +++.++|+| +|+|||. +|||+|+++++|||+|++||||||||+|++|+  |+||+       ++.|+|+||
T Consensus       102 ~d~L~~st~~~~~y~i-~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~-------~~~t~f~Ik  173 (188)
T 2j3w_B          102 ADKLEQANDDDKTYYI-IEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIK  173 (188)
T ss_dssp             CSEEEEETTEEEEEEE-EESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-------SSSEEEEEE
T ss_pred             ccccccccCCCCEEEE-EcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe-------CCCEEEEEE
Confidence            999998 667788866 6999999 69999999999999999999999999999997  56666       678999999


Q ss_pred             echhc
Q psy4857         314 FIKTI  318 (327)
Q Consensus       314 ~~~~~  318 (327)
                      |.+..
T Consensus       174 f~~~v  178 (188)
T 2j3w_B          174 FDESV  178 (188)
T ss_dssp             ECHHH
T ss_pred             ecHHH
Confidence            99764

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-41  Score=321.08  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=135.1

Q ss_pred             CCCCCCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCC-----------------
Q psy4857           2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQS-----------------   64 (327)
Q Consensus         2 ~r~~~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~-----------------   64 (327)
                      .|+|++ |.++||+|+|+|||+|||+|++++.++++|+|+||++|||+||.||+|+|+.|+..                 
T Consensus        47 ~~~l~~-~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~s  125 (283)
T 3cue_B           47 SESLLF-KRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNES  125 (283)
T ss_dssp             ---------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred             cccccc-CcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccccccc
Confidence            578887 44569999999999999999999999999999999999999999999988888642                 


Q ss_pred             ---------------------------------------------CCccchHHHHHHH-HHHHHHhhCCCCccc-ccCCC
Q psy4857          65 ---------------------------------------------TRCYDFKETAEKI-QLGFRIYLGISPNIS-NWSAG   97 (327)
Q Consensus        65 ---------------------------------------------~rc~~~~~t~e~I-~~~~K~flg~~a~v~-~~~~~   97 (327)
                                                                   +||.+++|+++|| |.+||||||++|+.+ +|+.+
T Consensus       126 s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~~  205 (283)
T 3cue_B          126 SSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSER  205 (283)
T ss_dssp             ---------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccCC
Confidence                                                         8999999999999 999999999999999 57778


Q ss_pred             CCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccC-CCcchhhhhh
Q psy4857          98 GDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLK-GDNVTELRNS  164 (327)
Q Consensus        98 ~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~-gd~~tEi~~~  164 (327)
                      +++|+|+.++|||++||++    ++|||+||+||||||||+|++|+++|++..+.++ ++++|+++++
T Consensus       206 ~geYvL~Dn~~pLt~fVs~----~~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~Ik  269 (283)
T 3cue_B          206 DNEYMIVDNFPTLTQFIPG----ENVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQ  269 (283)
T ss_dssp             SSCEEEEESSCSSSCSSCT----TCCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECC
T ss_pred             CCEEEEEeCchHHHhhhcc----CCcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEE
Confidence            8999999999999999998    4799999999999999999999988888888887 6667876553

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-40  Score=311.47  Aligned_cols=157  Identities=15%  Similarity=0.188  Sum_probs=139.3

Q ss_pred             chhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcC-------------------------
Q psy4857         158 VTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQ-------------------------  212 (327)
Q Consensus       158 ~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~-------------------------  212 (327)
                      +.+.++.|+|+|+|++||+|++++.++++|+|++|++|||+||.||+|.|+.|+.                         
T Consensus        53 ~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~ss~~~~~~  132 (283)
T 3cue_B           53 KRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNESSSKLSNA  132 (283)
T ss_dssp             --CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCccccccccccccccccccccccc
Confidence            3455699999999999999999999999999999999999999999998888764                         


Q ss_pred             -------------------------------------CCCccchHHHHHHH-HHHHHHhhCCCCccc-cCCCCCCeEEEE
Q psy4857         213 -------------------------------------STRCYDFKETAEKI-QLGFRIYLGISPNIS-NWSAGGDEFSLI  253 (327)
Q Consensus       213 -------------------------------------~~rc~~f~~t~e~I-k~~~KmflGi~a~v~-~~~~~~~ef~l~  253 (327)
                                                           .+||++++|+++|| |++||||||++|++. +|++++++|+|+
T Consensus       133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~~~geYvL~  212 (283)
T 3cue_B          133 SNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIV  212 (283)
T ss_dssp             --------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSSCSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccCCCCEEEEE
Confidence                                                 28999999999999 999999999999999 688888999999


Q ss_pred             ecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccC-CCCceEEEEEechhc
Q psy4857         254 FETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLK-GDNVTELRVKFIKTI  318 (327)
Q Consensus       254 ~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~-gd~~tei~ik~~~~~  318 (327)
                      .++|||++||++    ++|||+|++||||||||+|++|+++|++..+.++ ++++|+++|||.+.+
T Consensus       213 Dn~~pLt~fVs~----~~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v  274 (283)
T 3cue_B          213 DNFPTLTQFIPG----ENVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQV  274 (283)
T ss_dssp             ESSCSSSCSSCT----TCCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHH
T ss_pred             eCchHHHhhhcc----CCcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHH
Confidence            999999999998    4799999999999999999999966666677776 677999999999875

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=2.1e-40  Score=291.05  Aligned_cols=138  Identities=15%  Similarity=0.143  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857          13 VNSELFTLTYGALVSQLLKDYDN-----VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG   86 (327)
Q Consensus        13 vn~elfaltyg~lV~ql~~d~e~-----~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~flg   86 (327)
                      +|.|+|+|||||||+|+++++++     .+++|+||++||||||.||+|+|+ |. .+||++++++++|| |.+||++||
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r~-~~r~~d~ld~l~fI~k~~Wk~~fg   80 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-RE-TLAFREELDVLKFLCKDLWVAVFQ   80 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-GG-GGTTCCHHHHHHHHHTHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-hc-cCccCCHHHHHHHHHHHHHHHHhC
Confidence            58899999999999999999984     577899999999999999999888 64 68999999999999 999999999


Q ss_pred             CCCcccccCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceeEEEEeeecc
Q psy4857          87 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQL  153 (327)
Q Consensus        87 ~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~--~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l  153 (327)
                      ++++.++ +++.++|+|+.+++|+.+|||+|++++  .|||+|++||||||||++++++++|++-...+
T Consensus        81 k~~d~L~-t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~  148 (160)
T 2c0j_B           81 KQMDSLR-TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAAL  148 (160)
T ss_dssp             SCCSEEE-ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESST
T ss_pred             CcCccce-eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCC
Confidence            9999887 678899999988888999999999998  99999999999999999999999988754433

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=4.2e-40  Score=289.13  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=124.4

Q ss_pred             hhhhHHhhhHHHHHHHHHhhcCC-----HHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857         162 RNSELFTLTYGALVSQLLKDYDN-----VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG  235 (327)
Q Consensus       162 ~~~elf~ltYGalV~Ql~~d~e~-----~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflG  235 (327)
                      .+.|+|+||||+||+|+++++++     .++||+||++||||||.||+|+|+ | +.+||++++|++++| |.+||++||
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r-~~~r~~d~ld~l~fI~k~~Wk~~fg   80 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R-ETLAFREELDVLKFLCKDLWVAVFQ   80 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G-GGGTTCCHHHHHHHHHTHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h-ccCccCCHHHHHHHHHHHHHHHHhC
Confidence            46799999999999999999984     577899999999999999999888 6 468999999999999 999999999


Q ss_pred             CCCccccCCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEE
Q psy4857         236 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVK  313 (327)
Q Consensus       236 i~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~--~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik  313 (327)
                      ++++..+ +++.++|+|+-+++|+.+|||+|++++  .|||+|++||||||||++++++++|++-...   .+.+.+.||
T Consensus        81 k~~d~L~-t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~---~p~~~f~i~  156 (160)
T 2c0j_B           81 KQMDSLR-TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAA---LPVCKFQVV  156 (160)
T ss_dssp             SCCSEEE-ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESS---TTCEEEEEE
T ss_pred             CcCccce-eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecC---CCceEEEEE
Confidence            9998877 678899999977778999999999998  8999999999999999999999777664433   346999999


Q ss_pred             ech
Q psy4857         314 FIK  316 (327)
Q Consensus       314 ~~~  316 (327)
                      +.+
T Consensus       157 ~~~  159 (160)
T 2c0j_B          157 IPK  159 (160)
T ss_dssp             CCC
T ss_pred             eec
Confidence            875

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=6.2e-40  Score=287.92  Aligned_cols=138  Identities=18%  Similarity=0.218  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCC
Q psy4857          13 VNSELFTLTYGALVSQLLKDYDNVE----DVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGI   87 (327)
Q Consensus        13 vn~elfaltyg~lV~ql~~d~e~~~----evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~flg~   87 (327)
                      ++.|+|+|||||||+|+++++++++    ++|+||++||||||.||+|+|+ |+ .+||++++++++|| |.+||++||+
T Consensus         4 ~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~-~~r~~~~ld~lkfI~k~~Wk~~fgk   81 (160)
T 2bjn_A            4 ADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KD-TARFKDELDIMKFICKDFWTTVFKK   81 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hc-cCccCCHHHHHHHHHHHHHHHHhCC
Confidence            7999999999999999999998774    6899999999999999999888 75 58999999999999 9999999999


Q ss_pred             CCcccccCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceeEEEEeeecc
Q psy4857          88 SPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQL  153 (327)
Q Consensus        88 ~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~--~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l  153 (327)
                      +|+.++ ++++++|+|+.+++|+.+|||+|++++  .|||+||+||||||||++++++++|++....+
T Consensus        82 ~~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~  148 (160)
T 2bjn_A           82 QIDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM  148 (160)
T ss_dssp             CCSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST
T ss_pred             CCcccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC
Confidence            999876 667899999988899999999999984  89999999999999999999999998876443

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=6.6e-39  Score=281.38  Aligned_cols=150  Identities=18%  Similarity=0.222  Sum_probs=118.8

Q ss_pred             hhhhhHHhhhHHHHHHHHHhhcCCHH----HHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857         161 LRNSELFTLTYGALVSQLLKDYDNVE----DVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG  235 (327)
Q Consensus       161 i~~~elf~ltYGalV~Ql~~d~e~~~----evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflG  235 (327)
                      +...|+|+||||+||+|+++++++++    +||+||++||||||.||+|+|+ |+ .+||++++|++++| |++||++||
T Consensus         3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~-~~r~~~~ld~lkfI~k~~Wk~~fg   80 (160)
T 2bjn_A            3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KD-TARFKDELDIMKFICKDFWTTVFK   80 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hc-cCccCCHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999998764    6899999999999999999887 65 58999999999999 999999999


Q ss_pred             CCCccccCCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEE
Q psy4857         236 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVK  313 (327)
Q Consensus       236 i~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~--~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik  313 (327)
                      ++|+..+ ++++++|+|+.+++|+.+||++|+++.  .|||+|++||||||||++++++++|++....+   +.-.+.||
T Consensus        81 k~~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~---p~~~F~i~  156 (160)
T 2bjn_A           81 KQIDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM---PACKFQVM  156 (160)
T ss_dssp             SCCSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST---TCEEEEEE
T ss_pred             CCCcccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC---CceEEEEE
Confidence            9998766 567899999988888999999999984  89999999999999999999998887766443   45677777


Q ss_pred             ech
Q psy4857         314 FIK  316 (327)
Q Consensus       314 ~~~  316 (327)
                      +.+
T Consensus       157 ~~~  159 (160)
T 2bjn_A          157 IQK  159 (160)
T ss_dssp             EC-
T ss_pred             ecc
Confidence            654

>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*

Probab=91.18  E-value=1.5  Score=38.09  Aligned_cols=125  Identities=15%  Similarity=0.185  Sum_probs=79.1

Q ss_pred             HHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHh--hcCCCCccchHHHHHH-H-HHHHHHhhCCCC-ccccCCCCC
Q psy4857         174 LVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA--RTQSTRCYDFKETAEK-I-QLGFRIYLGISP-NISNWSAGG  247 (327)
Q Consensus       174 lV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLa--k~~~~rc~~f~~t~e~-I-k~~~KmflGi~a-~v~~~~~~~  247 (327)
                      ||..+++-.. +.++   -|+.+|.-.=..+.+.|=.  | ..+...+|...++- | ...=|.|.+..| +..--..++
T Consensus        50 lv~a~s~~~g~~~~~---ll~~fG~~~~~~~~~~y~~~l~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~~~~~  125 (181)
T 2kii_A           50 IVQDVAQRLNMPIQD---VVKAFGQFLFNGLASRHTDVVD-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLPN  125 (181)
T ss_dssp             HHHHHHHHTTCCHHH---HHHHHHHHHHHHHHHHHHHHHG-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEEECSS
T ss_pred             HHHHHHHHHCcCHHH---HHHHHHHHHHHHHHHHhHHHHh-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEEECCC
Confidence            4555555554 4444   4666665442233332111  2 33456666666676 8 777788998777 322122344


Q ss_pred             CeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEech
Q psy4857         248 DEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK  316 (327)
Q Consensus       248 ~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~  316 (327)
                      ++..|.- ..|           .  .++.++.|+|+|+-+..+.+|+...++...+|.+...+.|++.+
T Consensus       126 ~~l~l~Y-~S~-----------R--~l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~  180 (181)
T 2kii_A          126 NQIALRY-SSP-----------R--RLCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN  180 (181)
T ss_dssp             SEEEEEE-ECT-----------T--CCHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred             CEEEEEE-ecC-----------C--ChHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence            5555541 111           2  28899999999999999999999988877778888888888754

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=89.63  E-value=1.2  Score=38.33  Aligned_cols=104  Identities=15%  Similarity=0.226  Sum_probs=71.4

Q ss_pred             HHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHHHHHHHH-hhCCCCccccCC--CCCCeEEEEecCCccccceeccCC
Q psy4857         192 LDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRI-YLGISPNISNWS--AGGDEFSLIFETNPMLEFVELPDN  268 (327)
Q Consensus       192 L~~mGynIG~RLieefLak~~~~rc~~f~~t~e~Ik~~~Km-flGi~a~v~~~~--~~~~ef~l~~d~NPL~~FVelP~~  268 (327)
                      |.++||..|.++.+.           .+...    +.+|+- -+|+- ++....  .+.+.+.+.+.++|.++-   |  
T Consensus        53 L~~~G~~~G~~l~~~-----------~~~~l----~~~~~~~G~G~l-~i~~~~~~~~~~~~~i~v~~s~e~~~---~--  111 (163)
T 2oso_A           53 LYEIGEEFGKMLSPK-----------NIEEL----KKIFKLMNFGDL-EIDENKILLKNPPYKIKLSNPPYQWV---S--  111 (163)
T ss_dssp             HHHHHHHHHHHHCCS-----------SHHHH----HHHHHHHTCCEE-ECCHHHHHHSCSCEEEEEESCSCTTC---C--
T ss_pred             HHHHHHHHHHHHHHH-----------HHHHH----HHHHHHcCceEE-EEEeccccccCCcEEEEEEeCceeec---C--
Confidence            999999999988641           22233    444432 23331 332221  234568899899987743   3  


Q ss_pred             CCCCchhhhhHHHHHhhhhcc-cceEEEEEeeeccCCCCceEEEEEechh
Q psy4857         269 CTNLKYCNVLTGVLRGACEMV-QLDITSKFIQDQLKGDNVTELRVKFIKT  317 (327)
Q Consensus       269 ~~~L~ysn~lcGvIrGaLe~v-~~~V~~~fv~d~l~gd~~tei~ik~~~~  317 (327)
                       .+=--+++.+|++.|.++.+ +=++.+.=++-.-.||+.-.+.++..+.
T Consensus       112 -~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F~~~~~~~  160 (163)
T 2oso_A          112 -KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEVDE  160 (163)
T ss_dssp             -CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEEEC-
T ss_pred             -CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEEEEEEHHH
Confidence             23456788999999999987 6668888888899999999999987654

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=86.68  E-value=1.1  Score=38.59  Aligned_cols=121  Identities=15%  Similarity=0.192  Sum_probs=75.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHHHHHHHH-hhCCCCc
Q psy4857          12 KVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRI-YLGISPN   90 (327)
Q Consensus        12 kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I~~~~K~-flg~~a~   90 (327)
                      .|..++|.++.-+|-..|..  ++.+..   |.++||..|.++.+.           .+...    +..|+- -+|+- +
T Consensus        27 ~vp~~~f~~l~~~l~~~l~~--~G~~~~---L~~~G~~~G~~l~~~-----------~~~~l----~~~~~~~G~G~l-~   85 (163)
T 2oso_A           27 KIPMPYFGLFALVIFDKVKE--LGSETS---LYEIGEEFGKMLSPK-----------NIEEL----KKIFKLMNFGDL-E   85 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHCCS-----------SHHHH----HHHHHHHTCCEE-E
T ss_pred             cccHHHHHHHHHHHHHHHHh--cCHHHH---HHHHHHHHHHHHHHH-----------HHHHH----HHHHHHcCceEE-E
Confidence            36677777776666544433  222211   999999999887641           22233    344432 23331 2


Q ss_pred             ccccC--CCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhc-ccceeEEEEeeeccCCCcch
Q psy4857          91 ISNWS--AGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEM-VQLDITSKFIQDQLKGDNVT  159 (327)
Q Consensus        91 v~~~~--~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~-v~~~v~~~fv~d~l~gd~~t  159 (327)
                      +....  .+++.+.+...++|.++-   |   .+=--+.+.+|++.|.++. ++=++.+.=++-.-.||+.=
T Consensus        86 i~~~~~~~~~~~~~i~v~~s~e~~~---~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C  151 (163)
T 2oso_A           86 IDENKILLKNPPYKIKLSNPPYQWV---S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKC  151 (163)
T ss_dssp             CCHHHHHHSCSCEEEEEESCSCTTC---C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSE
T ss_pred             EEeccccccCCcEEEEEEeCceeec---C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeE
Confidence            22221  234567888888887743   3   3345678899999999988 77788888888888888754

>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*

Probab=83.26  E-value=11  Score=32.61  Aligned_cols=91  Identities=11%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             CCCccchHHHHHHH-HHHHHHhhCCCC-ccccCCCCCCeEEEEecCCccccceeccCCCCCC-chhhhhHHHHHhhhhcc
Q psy4857         213 STRCYDFKETAEKI-QLGFRIYLGISP-NISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL-KYCNVLTGVLRGACEMV  289 (327)
Q Consensus       213 ~~rc~~f~~t~e~I-k~~~KmflGi~a-~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L-~ysn~lcGvIrGaLe~v  289 (327)
                      .+.-.+|...++-| ...-|.|.+..| +..--..++++..|.-        -      +.- -++.++.|+|+|+-+.-
T Consensus        91 g~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~------S~R~gl~~~~~Gli~~~A~~f  156 (189)
T 3tfg_A           91 GDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHY--------Q------STRCGLAPMVLGLLHGLGKRF  156 (189)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEEE--------E------CSSSSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------E------CCCCCHHHHHHHHHHHHHHHh
Confidence            44577888888889 888889988776 2211112234444441        1      222 37899999999999988


Q ss_pred             cceEEEEEeeeccCCCCceEEEEEechh
Q psy4857         290 QLDITSKFIQDQLKGDNVTELRVKFIKT  317 (327)
Q Consensus       290 ~~~V~~~fv~d~l~gd~~tei~ik~~~~  317 (327)
                      +.+|+...++..-.|.+...++|++.+.
T Consensus       157 ~~~v~i~~~~~~~~~~~h~~f~i~~~~~  184 (189)
T 3tfg_A          157 QTKVEVTQTAFRETGEDHDIFSIKYEDS  184 (189)
T ss_dssp             TCEEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred             CCCeEEEEEeccCCCCCeEEEEEEECCC
Confidence            8889988888887888899999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	3e-61
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	7e-60
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	2e-31
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	8e-31

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  190 bits (485), Expect = 3e-61
 Identities = 106/158 (67%), Positives = 134/158 (84%), Gaps = 1/158 (0%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 4   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 63

Query: 223 AEKIQ-LGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I  + F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 64  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 123

Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQ 319
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+
Sbjct: 124 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIE 161

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  187 bits (476), Expect = 7e-60
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 11  KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDF 70
           KK++SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF
Sbjct: 1   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 60

Query: 71  KETAEKIQ-LGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVL 129
           +ETA+ I  + F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L
Sbjct: 61  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 120

Query: 130 TGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
            GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 121 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 153

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  114 bits (286), Expect = 2e-31
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 3/136 (2%)

Query: 11  KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYD 69
            +V+   F L +  +V        +V ++  +L  MG  +G  L++  + R     R   
Sbjct: 2   TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK 61

Query: 70  FKETAEKIQL-GFRIYLGISPNISNWSAGGD-EFSLIFETNPMLEFVELPDNCTNLKYCN 127
                  I++  ++   G   +    +   D  + +I +   +  ++ +P   + L    
Sbjct: 62  VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAA 121

Query: 128 VLTGVLRGACEMVQLD 143
              G++          
Sbjct: 122 FTGGIVEAILTHSGFP 137

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  112 bits (281), Expect = 8e-31
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 8/155 (5%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKE 221
           +   F L +  +V        +V ++  +L  MG  +G  L++  + R     R      
Sbjct: 5   SVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLN 64

Query: 222 TAEKIQL-GFRIYLGISPNISNWSAGGD-EFSLIFETNPMLEFVELPDNCTNLKYCNVLT 279
               I++  ++   G   +    +   D  + +I +   +  ++ +P   + L       
Sbjct: 65  ILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTG 124

Query: 280 GVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKF 314
           G++            +K      KG   T L +KF
Sbjct: 125 GIVEAILTH--SGFPAKVTVHWHKG---TTLMIKF 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d1u55a_	188	Methyl-accepting chemotaxis protein {Thermoanaerob	90.63

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-57  Score=399.29  Aligned_cols=160  Identities=66%  Similarity=1.120  Sum_probs=156.3

Q ss_pred             hhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCCCC
Q psy4857         160 ELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGISP  238 (327)
Q Consensus       160 Ei~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflGi~a  238 (327)
                      |++|+|+|||||||||+|+++|+++++++|+||++||||||.||+|+|++|++.+||++|++++++| +++||||||++|
T Consensus         1 ~kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~~~~R~~~~l~~l~fI~~~~wk~~fgk~~   80 (161)
T d1wc9a_           1 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITP   80 (161)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSCCCHHHHHHHHHHTHHHHHHSCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhcCCCccccHHHHHHHHHHHHHHHHcCCCc
Confidence            4679999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             ccccCCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEechhc
Q psy4857         239 NISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTI  318 (327)
Q Consensus       239 ~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~~~  318 (327)
                      +..+|+.++++|++++++|||++||++|+++++|||+|++||||||||+|++++|+|+|++|+|+||++|+|+|||.+++
T Consensus        81 d~l~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~~~~d~l~gd~~~~i~v~~~~~~  160 (161)
T d1wc9a_          81 SITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI  160 (161)
T ss_dssp             EEECCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEEEEEEEC
T ss_pred             ccceecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEEEEecccCCCCceEEEEEEeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q psy4857         319 Q  319 (327)
Q Consensus       319 ~  319 (327)
                      +
T Consensus       161 ~  161 (161)
T d1wc9a_         161 E  161 (161)
T ss_dssp             -
T ss_pred             C
Confidence            5

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-56  Score=388.58  Aligned_cols=154  Identities=68%  Similarity=1.130  Sum_probs=151.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCCCC
Q psy4857          11 KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGISP   89 (327)
Q Consensus        11 ~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~flg~~a   89 (327)
                      +|||+|+|||||||||+|+++|+++++++|+||++||||||.||+|+|++|++.+||+++++++++| +++||||||++|
T Consensus         1 ~kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~~~~R~~~~l~~l~fI~~~~wk~~fgk~~   80 (161)
T d1wc9a_           1 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITP   80 (161)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSCCCHHHHHHHHHHTHHHHHHSCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhcCCCccccHHHHHHHHHHHHHHHHcCCCc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             cccccCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCcchhhhhh
Q psy4857          90 NISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNS  164 (327)
Q Consensus        90 ~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~~tEi~~~  164 (327)
                      +.++|+.++++|+|++++|||++|||+|+++++|||+||+||||||||+|++|+|+|||++|+|+||++|||+++
T Consensus        81 d~l~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~~~~d~l~gd~~~~i~v~  155 (161)
T d1wc9a_          81 SITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMR  155 (161)
T ss_dssp             EEECCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEEE
T ss_pred             ccceecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEEEEecccCCCCceEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999764

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.1e-39  Score=286.06  Aligned_cols=150  Identities=15%  Similarity=0.253  Sum_probs=136.5

Q ss_pred             hhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhc-CCCCccchHHHHHHH-HHHHHHhhCCCCc
Q psy4857         162 RNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKETAEKI-QLGFRIYLGISPN  239 (327)
Q Consensus       162 ~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~-~~~rc~~f~~t~e~I-k~~~KmflGi~a~  239 (327)
                      ++.++|+||||+||+++.++.++++|+|++|++|||+||.||+|+|++|+ ..+||+++.+++++| |.+|||+||++++
T Consensus         4 Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk~~d   83 (168)
T d2j3wb1           4 VSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEAD   83 (168)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSSCCS
T ss_pred             hCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCcCcc
Confidence            38999999999999888888889999999999999999999999999987 568999999999999 9999999999999


Q ss_pred             cccCCCC-CCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCCceEEEEEech
Q psy4857         240 ISNWSAG-GDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDNVTELRVKFIK  316 (327)
Q Consensus       240 v~~~~~~-~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~~tei~ik~~~  316 (327)
                      ..+|+.+ .++|+|+.+++|+..||++|+++++|+|++++||||||||++++++  ||||+.       +.|++.|||.+
T Consensus        84 ~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~~-------~~~~f~ikf~~  156 (168)
T d2j3wb1          84 KLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH-------KGTTLMIKFDE  156 (168)
T ss_dssp             EEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEES-------SSEEEEEEECH
T ss_pred             cccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEeeC-------CCeEEEEEccH
Confidence            8887554 5789999788888899999999999999999999999999999885  888863       57999999997


Q ss_pred             hc
Q psy4857         317 TI  318 (327)
Q Consensus       317 ~~  318 (327)
                      ..
T Consensus       157 ~v  158 (168)
T d2j3wb1         157 SV  158 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=9.8e-40  Score=286.45  Aligned_cols=137  Identities=13%  Similarity=0.240  Sum_probs=127.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhc-CCCCccchHHHHHHH-HHHHHHhhCCCC
Q psy4857          12 KVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKETAEKI-QLGFRIYLGISP   89 (327)
Q Consensus        12 kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~-~~~rc~~~~~t~e~I-~~~~K~flg~~a   89 (327)
                      +||+|+|+|||||||+|++++.++++|+|++|++|||+||.||+|+|++|+ ..+||+++.++++|| +.+|||+||+++
T Consensus         3 ~Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk~~   82 (168)
T d2j3wb1           3 EVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEA   82 (168)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSSCC
T ss_pred             hhCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCcCc
Confidence            499999999999999999999999999999999999999999999999987 568999999999999 999999999999


Q ss_pred             cccccCCC-CCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeE--EEE
Q psy4857          90 NISNWSAG-GDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDIT--SKF  148 (327)
Q Consensus        90 ~v~~~~~~-~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~--~~f  148 (327)
                      +.++|+.+ .++|+|+.+++|+.+||++|+++++|+|++|+||||||||++++++++  ||+
T Consensus        83 d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~  144 (168)
T d2j3wb1          83 DKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW  144 (168)
T ss_dssp             SEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEee
Confidence            99987654 588999988888889999999999999999999999999999988555  554

>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: H-NOX domain
domain: Methyl-accepting chemotaxis protein
species: Thermoanaerobacter tengcongensis [TaxId: 119072]

Probab=90.63  E-value=0.9  Score=37.86  Aligned_cols=116  Identities=15%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             HHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCCCC-ccccCCCCCCeEEEEecCCccccceecc
Q psy4857         189 NKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGISP-NISNWSAGGDEFSLIFETNPMLEFVELP  266 (327)
Q Consensus       189 n~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflGi~a-~v~~~~~~~~ef~l~~d~NPL~~FVelP  266 (327)
                      +.-|+..|...=.++.+-|-.--......+|...++-| ...-|.|.+..| +..--..+.+++.|.        |-+ +
T Consensus        64 ~~ll~~fG~~~~~~~~~~y~~~~~g~~~~dFL~~ld~iH~~v~~~yp~~~~P~f~~~~~~~~~l~l~--------Y~S-~  134 (188)
T d1u55a_          64 NEIWREVGRQNIKTFSEWFPSYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEME--------YVS-K  134 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGTTTCCHHHHHHHHHHHHHHHHTTSTTCCCCBCCEEEEETTEEEEE--------EEE-T
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhcCCCHHHHHHhhhhHHHHHHHhCCCCCCCeEEEEECCCCEEEEE--------EEe-C
Confidence            33466666544334554222111245688888889989 888889999877 222112233455444        434 2


Q ss_pred             CCCCCCchhhhhHHHHHhhhhcccceEEEEEee-eccCCCCceEEEEEechhc
Q psy4857         267 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQ-DQLKGDNVTELRVKFIKTI  318 (327)
Q Consensus       267 ~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~-d~l~gd~~tei~ik~~~~~  318 (327)
                         .+  ++.++.|.|+|+-+--+-+++...++ ....|....+++|+|.+..
T Consensus       135 ---R~--l~~~~~Gli~g~A~~f~~~i~I~~~~~~~~~~~~~~~~~i~f~n~~  182 (188)
T d1u55a_         135 ---RK--MYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPV  182 (188)
T ss_dssp             ---TC--CHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCC
T ss_pred             ---CC--hHHHHHHHHHHHHHHhCCceEEEEeeccccCCccEEEEEEEEEchh
Confidence               23  46799999999999878888888775 4567777899999998643