Psyllid ID: psy4909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
LDELELAGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECSSSSVEPNAPSSEKKNKSKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEccccccHHHHHHHHHHHHcccEEccccEEEEEEccccccccccEEEEEEEEEcccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccHcHEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccHHccccEEEEEccHHHHHHHHcccEEEEEEccccccc
Coil and Loop (DISEMBL)
ldelelagvvpssattdsngtpnslastsphsptlglnhsavtecssssvepnapssekknkskmNSEEinaskgmvkptavrplsttntsatvpsssapsilpqsqqshnslmslnhgtsgathlrvTNTRAvlnlrrrppattttltppphlwrsrVIAQDVldkaglelpppasdsnsqqQQQQEvydkslapseahipymlgvvplgpqplhkahhyQYQLVDqayhhlptpadserlrhyitrtpcttpsyypqvplphsdtldffQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFqrheepklinedyeqgtyiyfdnekwsqrkkegfTFEYKYLEDRDLN
Flexible Loop (DISEMBL)
ldelelagvvpssattdsngtpnSLASTSPHSPTLGLNHSAVTEcssssvepnapssekknkskmNSEEinaskgmvkptAVRPLSTTNtsatvpsssapsILPQSQQSHNSLMSLNHGTSGATHLRVTNTravlnlrrrppattttltppphlwrSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYfdnekwsqrkkegftfeykyledrdln
Low Complexity Region (SEG)
LDELELAGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECssssvepnapssekknkskmnseeinASKGMVKPTAVRPLsttntsatvpsssapsILPQSQQSHNSLMSLNHGTSGATHLRVTNTRAVLNlrrrppattttltppphlWRSRVIAQDVLDKAGLELPPPASDSNSqqqqqqEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTkaqylaakalkkqSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN
Disordered region (IsUnstruct)
*******************************************************************************************************************************VTNTRAVLN****************HLWRSRVIAQDVL*********************************AHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYL******
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************************************YQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQ***********Y**GTYIYFDNEKWSQRKKEGFTFEYKYLEDRD**
Disordered Region (DISEMBL)
LDELELAGVVP**********************TLGLNH*****************************EINASKGMVKPTAVRP*************************HNSLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELP******************KSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN
Disordered Region (DISPRO)
****ELA************************************************************************************************************************************************************************************************HIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLED****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LDELELAGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECSSSSVEPNAPSSEKKNKSKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
O75175	753	CCR4-NOT transcription co	yes	N/A	0.454	0.217	0.731	1e-72
Q8K0V4	751	CCR4-NOT transcription co	yes	N/A	0.454	0.218	0.725	7e-72
O13870	640	General negative regulato	yes	N/A	0.354	0.2	0.503	5e-34
Q52JK6	603	Probable NOT transcriptio	N/A	N/A	0.279	0.167	0.342	2e-12
Q9FPW4	614	Probable NOT transcriptio	no	N/A	0.243	0.143	0.386	3e-12
Q9NZN8	540	CCR4-NOT transcription co	no	N/A	0.224	0.15	0.411	2e-10
Q8C5L3	540	CCR4-NOT transcription co	no	N/A	0.224	0.15	0.411	2e-10
P87240	306	General negative regulato	no	N/A	0.282	0.333	0.345	5e-08
P06102	836	General negative regulato	yes	N/A	0.257	0.111	0.301	3e-07
Q94547	585	Regulator of gene activit	no	N/A	0.243	0.150	0.295	1e-06

>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1

 Score =  273 bits (699), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 139/164 (84%)

Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
           SE +IP  LGV PLGP PL K   YQ  + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 589 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 648

Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 316
           + Q+P PHSDT++F+QRLSTE+LFFIFYY+EGTKAQYLAAKALKKQSWRFHTKYMMWFQR
Sbjct: 649 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 708

Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
           HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 709 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752

The CCR4-NOT complex functions as general transcription regulation complex.
Homo sapiens (taxid: 9606)

>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1

 Score =  271 bits (692), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 119/164 (72%), Positives = 138/164 (84%)

Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
           SE +IP  LGV PLGP  L K   YQ  + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 587 SEVNIPLSLGVCPLGPVSLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 646

Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 316
           + Q+P PHSDT++F+QRLSTE+LFFIFYY+EGTKAQYLAAKALKKQSWRFHTKYMMWFQR
Sbjct: 647 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 706

Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
           HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 707 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 750

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 88/129 (68%), Gaps = 1/129 (0%)

Query: 232 HLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKA 291
           ++P   D+ + ++YI + P   P YYPQ PLP  D+ +  + +  ++LF++FYY  GT  
Sbjct: 508 YVPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVDPDTLFYMFYYRPGTYQ 567

Query: 292 QYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNE-KWSQRKKEGFTF 350
           QY+A + LKKQSWRFH KY  WFQRHEEPK+I +++E G+Y YFD E  W QRKK  F F
Sbjct: 568 QYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFEGDWVQRKKADFRF 627

Query: 351 EYKYLEDRD 359
            Y+YLED D
Sbjct: 628 TYQYLEDDD 636

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 256 YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQ 315
           YY + P P +    +F +   ++LF+IFY M   +AQ  AA  L  + W +H ++ +WF 
Sbjct: 495 YYAKQPPPLNQA--YFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFM 552

Query: 316 R--HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
           R  + EP +    YE+G+YI FD   W    K+ F    + LE R
Sbjct: 553 RVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEKR 597

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Nicotiana benthamiana (taxid: 4100)

>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%)

Query: 271 FQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQG 330
           F+R S E LF+ FY M   +AQ  AA  L ++ W +H +  +WF R  EP +    YE+G
Sbjct: 521 FKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATYERG 580

Query: 331 TYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
           TY Y D   +   +KE F  +Y+ +E R
Sbjct: 581 TYEYLDPNSFKTVRKEHFVIKYELMEKR 608

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 277 ESLFFIFYYMEGTKA-QYLAAKALKKQSWRFHTKYMMWFQR--HEEPKLINEDYEQGTYI 333
           E L F  YYM G    Q LAA  L  + WR+H +  +W  R    EP +    YE+GTY 
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500

Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
           +FD   W +  KE F  EY  LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 277 ESLFFIFYYMEGTKA-QYLAAKALKKQSWRFHTKYMMWFQR--HEEPKLINEDYEQGTYI 333
           E L F  YYM G    Q LAA  L  + WR+H +  +W  R    EP +    YE+GTY 
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500

Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
           +FD   W +  KE F  EY  LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 254 PSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMW 313
           P+ Y  V  P + +  F  + S E+LF+IFY M     Q  AA+ L  ++WRFH +  +W
Sbjct: 196 PACYKNVNPPPAISKIF--QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVW 253

Query: 314 FQ--RHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
                  +P      +E+G Y++FD   W +R K+ F   Y  LEDR
Sbjct: 254 LTPVPGMKPLQRTPQFERGYYMFFDPIHW-KRIKKDFLLMYAALEDR 299

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query: 264 HSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLI 323
           ++  L+ F+ L   SLF+ +Y+      + +A K L ++ W+      MWF R  E K  
Sbjct: 693 YAKILENFRTLEMFSLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFF 752

Query: 324 NEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLE 356
           NE  E G Y  F  + W+   K  F  +Y +L+
Sbjct: 753 NEICEVGDYKIFKLDDWTVIDKINFRLDYSFLQ 785

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2 SV=2

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 254 PSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMW 313
           P Y     +    T    ++L  + LFF+FY   G   Q +AA  L  + WR+H +  +W
Sbjct: 468 PEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIW 527

Query: 314 FQR------HEEPKLINEDYEQGTYIYFDNEKWSQRKK 345
             R      +E+    N   E+GT+ YFD + W +  K
Sbjct: 528 ITRIPGIDQYEK----NGTKERGTFYYFDAQSWKRLSK 561

Essential for viability. Acts as a suppressor of position effect variegation (PEV) at the white locus and regulates the expression of several unrelated genes.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
307206931	681	CCR4-NOT transcription complex subunit 3	0.609	0.323	0.671	1e-85
307178384	700	CCR4-NOT transcription complex subunit 3	0.512	0.264	0.674	3e-83
332030498	765	CCR4-NOT transcription complex subunit 3	0.490	0.231	0.700	4e-83
322785939	682	hypothetical protein SINV_80465 [Solenop	0.490	0.259	0.700	5e-83
383854016	684	PREDICTED: uncharacterized protein LOC10	0.587	0.309	0.646	6e-83
340719054	684	PREDICTED: hypothetical protein LOC10064	0.587	0.309	0.637	3e-82
332373262	641	unknown [Dendroctonus ponderosae]	0.941	0.530	0.442	6e-82
350398995	684	PREDICTED: hypothetical protein LOC10074	0.587	0.309	0.633	7e-82
328783040	660	PREDICTED: hypothetical protein LOC41179	0.512	0.280	0.695	5e-80
242003924	589	conserved hypothetical protein [Pediculu	0.509	0.312	0.656	2e-79

>gi|307206931|gb|EFN84777.1| CCR4-NOT transcription complex subunit 3 [Harpegnathos saltator]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/222 (67%), Positives = 173/222 (77%), Gaps = 2/222 (0%)

Query: 142 PATTTTLTP--PPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEA 199
           P+T   L P  P  +   + IAQ V+ +AGLE+PP  S  N     +    + + A SEA
Sbjct: 460 PSTANGLIPKLPDSMSSLKSIAQQVIVRAGLEIPPSESSRNIFDSAKTNSNNNNNATSEA 519

Query: 200 HIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQ 259
           HIP +LGV PLGP PL K H  Q+Q+++ AY+H+P P+DSERLR Y+ R  CTTP YY Q
Sbjct: 520 HIPPLLGVAPLGPVPLQKEHQLQFQMMEAAYYHMPHPSDSERLRSYLPRNTCTTPPYYQQ 579

Query: 260 VPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEE 319
           V LPHSDT++FFQRLSTE+LFFIFYYMEG+K QYLAAKALKKQSWRFHTKYMMWFQRHEE
Sbjct: 580 VQLPHSDTVEFFQRLSTETLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEE 639

Query: 320 PKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
           PK+INE+YEQGTYIYFD EKW QRKKEGFTFEYKYLEDRDLN
Sbjct: 640 PKVINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN 681

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178384|gb|EFN67129.1| CCR4-NOT transcription complex subunit 3 [Camponotus floridanus]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 167/212 (78%)

Query: 150 PPPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVP 209
           P  ++   + IAQ V+ +AGLE+PP   + N     +      + A SEAHIP +LGV P
Sbjct: 489 PDGNMSSLKSIAQQVIVRAGLEIPPSEPNRNIFDSTKTNNNSGNNATSEAHIPPLLGVAP 548

Query: 210 LGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLD 269
           LGP PL + H  Q+Q+++ AY H+P P+DSERLR Y+ R  CTTP YY QV LPHSDT++
Sbjct: 549 LGPVPLQREHQLQFQMMEAAYCHMPHPSDSERLRSYLPRNTCTTPPYYQQVQLPHSDTVE 608

Query: 270 FFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQ 329
           FFQRLSTE+LFFIFYYMEG+K QYLAAKALKKQSWRFHTKYMMWFQRHEEPK+INE+YEQ
Sbjct: 609 FFQRLSTETLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQ 668

Query: 330 GTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
           GTYIYFD EKW QRKKEGFTFEYKYLEDRDLN
Sbjct: 669 GTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN 700

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030498|gb|EGI70186.1| CCR4-NOT transcription complex subunit 3 [Acromyrmex echinatior]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/204 (70%), Positives = 165/204 (80%)

Query: 158 RVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHK 217
           + IAQ V+ +AGLE+PP   + N     +      + A SEAHIP +LGV PLGP PL K
Sbjct: 562 KSIAQQVIVRAGLEIPPSEPNRNIFDSAKTSNSSNNNATSEAHIPPLLGVAPLGPVPLQK 621

Query: 218 AHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTE 277
            H  Q+Q+++ AY+H+P P+DSERLR Y+ R  CTTP YY QV LPHSDT++FFQRLSTE
Sbjct: 622 EHQLQFQMMEAAYYHMPHPSDSERLRSYLPRNTCTTPPYYQQVQLPHSDTVEFFQRLSTE 681

Query: 278 SLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDN 337
           +LFFIFYYMEG+K QYLAAKALKKQSWRFHTKYMMWFQRHEEPK+INE+YEQGTYIYFD 
Sbjct: 682 TLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINEEYEQGTYIYFDY 741

Query: 338 EKWSQRKKEGFTFEYKYLEDRDLN 361
           EKW QRKKEGFTFEYKYLEDRDLN
Sbjct: 742 EKWGQRKKEGFTFEYKYLEDRDLN 765

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785939|gb|EFZ12558.1| hypothetical protein SINV_80465 [Solenopsis invicta]

 Score =  314 bits (804), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 143/204 (70%), Positives = 165/204 (80%)

Query: 158 RVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHK 217
           + IAQ V+ +AGLE+PP   + N     +      + A SEAHIP +LGV PLGP PL K
Sbjct: 479 KSIAQQVIVRAGLEIPPSEPNRNIFDSAKTSNSSNNNATSEAHIPPLLGVAPLGPVPLQK 538

Query: 218 AHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTE 277
            H  Q+Q+++ AY+H+P P+DSERLR Y+ R  CTTP YY QV LPHSDT++FFQRLSTE
Sbjct: 539 EHQLQFQMMEAAYYHMPHPSDSERLRSYLPRNTCTTPPYYQQVQLPHSDTVEFFQRLSTE 598

Query: 278 SLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDN 337
           +LFFIFYYMEG+K QYLAAKALKKQSWRFHTKYMMWFQRHEEPK+INE+YEQGTYIYFD 
Sbjct: 599 TLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQGTYIYFDY 658

Query: 338 EKWSQRKKEGFTFEYKYLEDRDLN 361
           EKW QRKKEGFTFEYKYLEDRDLN
Sbjct: 659 EKWGQRKKEGFTFEYKYLEDRDLN 682

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854016|ref|XP_003702518.1| PREDICTED: uncharacterized protein LOC100878851 [Megachile rotundata]

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 173/229 (75%), Gaps = 17/229 (7%)

Query: 142 PATTTTLTP--PPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKS------ 193
           P+T   L P  P  +   + IAQ V+ +A LE+PP  S+ N        ++D +      
Sbjct: 464 PSTANGLIPKLPDGMSSLKSIAQQVIVRADLEIPPSESNRN--------IFDSAKANNNN 515

Query: 194 -LAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCT 252
             A SEAHIP +LGV PLGP PL K H  Q+Q+++ AY+H+P P+DSERLR Y+ R  C 
Sbjct: 516 NNATSEAHIPPLLGVAPLGPVPLQKEHQLQFQMMEAAYYHMPHPSDSERLRSYLPRNLCP 575

Query: 253 TPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMM 312
           TP YY QV LPHSDT++FFQRLSTE+LFFIFYYMEG+K QYLAAKALKKQSWRFHTKYMM
Sbjct: 576 TPPYYQQVQLPHSDTVEFFQRLSTETLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMM 635

Query: 313 WFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
           WFQRHEEPK+INE+YEQGTYIYFD EKW QRKKEGFTFEYKYLEDRDLN
Sbjct: 636 WFQRHEEPKVINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN 684

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719054|ref|XP_003397972.1| PREDICTED: hypothetical protein LOC100648868 [Bombus terrestris]

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 146/229 (63%), Positives = 173/229 (75%), Gaps = 17/229 (7%)

Query: 142 PATTTTLTP--PPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPS-- 197
           P+T   L P  P  +   + IAQ V+ +AGL++PP  S+ N        ++D + A +  
Sbjct: 464 PSTANGLIPKLPDGMSSLKSIAQQVIVRAGLDIPPSESNRN--------IFDTAKANNNN 515

Query: 198 -----EAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCT 252
                EAHIP +L V PLGP PL K H  Q+QL++ A++H+P P+DSERLR Y+ R  C 
Sbjct: 516 SKVTMEAHIPPLLSVAPLGPVPLQKEHQLQFQLMEAAHYHMPHPSDSERLRSYLPRNSCV 575

Query: 253 TPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMM 312
           TPSYY Q  LPHSDT++FFQRLSTE+LFFIFYYMEG+K QYLAAKALKKQSWRFHTKYMM
Sbjct: 576 TPSYYQQSQLPHSDTVEFFQRLSTETLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMM 635

Query: 313 WFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
           WFQRHEEPK+INE+YEQGTYIYFD EKW QRKKEGFTFEYKYLEDRDLN
Sbjct: 636 WFQRHEEPKVINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN 684

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373262|gb|AEE61772.1| unknown [Dendroctonus ponderosae]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 191/432 (44%), Positives = 239/432 (55%), Gaps = 92/432 (21%)

Query: 1   LDELELAGV-VPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECSS--SSVEPNAPSS 57
           LDE+EL+GV +PSS      GTP S+ S S  SP      S    CSS   S+EP  P  
Sbjct: 231 LDEVELSGVGLPSSG-----GTPTSMISGS--SPIASPGPSIPQNCSSFNHSIEPILPE- 282

Query: 58  EKKNKSKMNSEEINASKGMVKPTAVRPLSTT-----NTSATV-------------PSSSA 99
               + K+  +E+  +   +KPT +R  +T+     NTS  +             P+ +A
Sbjct: 283 ----EKKVVQKEVQQTPKPIKPTPIRATTTSFNTSLNTSLVISNVASTAPTMTSTPNKTA 338

Query: 100 PSILPQSQQSHNSLMSLNHGTSGATHLR--VTNT---------RAVLNLRRRPPATTTTL 148
           P+    S    N     N     A ++   + N          + V NL   PP     +
Sbjct: 339 PAAREPSPVMSNLTTVSNFAAVAANNINKSLNNVDVPPINVPQQVVTNLNVVPPKAPVEV 398

Query: 149 ---------------------TPPPHLWRS--------------RVIAQDVLDKAGLELP 173
                                 PPP +                 + +AQ V+D+AGLE  
Sbjct: 399 QNIVPTIEPPAPPAPIAITNPEPPPVIANGTDNNEKISDGMSTLKTMAQQVIDRAGLEAQ 458

Query: 174 PPASDSNSQQQQQQEVYD----KSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQA 229
           PP         Q Q + D     S   +EAHIP +LGV PLG  PL K H  Q+QL++ A
Sbjct: 459 PP---------QPQVILDPPRNHSHVKTEAHIPPLLGVAPLGAVPLQKEHQTQFQLMESA 509

Query: 230 YHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGT 289
           ++H+P P+D+ER+RHY+ R P  TP YY Q PL +SDTL+F+QRL TE+LFF+FYYMEGT
Sbjct: 510 FYHMPHPSDTERVRHYLPRNPYNTPPYYIQAPLFNSDTLEFYQRLGTETLFFVFYYMEGT 569

Query: 290 KAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFT 349
           KAQYLAAKALKKQSWRFHTKYMMWFQRHEEPK+INE+YEQGTYIYFD EKW QRKKEGFT
Sbjct: 570 KAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINEEYEQGTYIYFDYEKWGQRKKEGFT 629

Query: 350 FEYKYLEDRDLN 361
           FEYKYLEDRDLN
Sbjct: 630 FEYKYLEDRDLN 641

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398995|ref|XP_003485377.1| PREDICTED: hypothetical protein LOC100749312 [Bombus impatiens]

 Score =  310 bits (794), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 145/229 (63%), Positives = 173/229 (75%), Gaps = 17/229 (7%)

Query: 142 PATTTTLTP--PPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPS-- 197
           P+T   L P  P  +   + IAQ V+ +AGL++PP  S+ N        ++D + A +  
Sbjct: 464 PSTANGLIPKLPDGMSSLKSIAQQVIVRAGLDIPPSESNRN--------IFDTAKANNNN 515

Query: 198 -----EAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCT 252
                + HIP +L V PLGP PL K H  Q+QL++ A++HLP P+DSERLR+Y+ R  C 
Sbjct: 516 SKVTVDTHIPPILSVAPLGPVPLQKEHQLQFQLLEAAHYHLPVPSDSERLRYYLPRNRCD 575

Query: 253 TPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMM 312
           TPSYY Q  LPHSDT++FFQRLSTE+LFFIFYYMEG+K QYLAAKALKKQSWRFHTKYMM
Sbjct: 576 TPSYYTQSQLPHSDTVEFFQRLSTETLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMM 635

Query: 313 WFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
           WFQRHEEPK+INE+YEQGTYIYFD EKW QRKKEGFTFEYKYLEDRDLN
Sbjct: 636 WFQRHEEPKVINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN 684

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783040|ref|XP_395261.3| PREDICTED: hypothetical protein LOC411794 [Apis mellifera]

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 159/200 (79%), Gaps = 15/200 (7%)

Query: 169 GLELPPPASDSNSQQQQQQEVYDKS-------LAPSEAHIPYMLGVVPLGPQPLHKAHHY 221
           GLE+PP  S+ N        ++D +        A SEAHIP +LGV PLGP PL K H  
Sbjct: 469 GLEIPPSESNRN--------IFDSAKANNNNNNATSEAHIPPLLGVAPLGPVPLQKEHQL 520

Query: 222 QYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFF 281
           Q+Q+++ AY+H+P P+DSERLR Y+ R  C TP YY QV LPHSDT++FFQRLSTE+LFF
Sbjct: 521 QFQMMEAAYYHMPHPSDSERLRSYLPRNLCPTPPYYQQVQLPHSDTVEFFQRLSTETLFF 580

Query: 282 IFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWS 341
           IFYYMEG+K QYLAAKALKKQSWRFHTKYMMWFQRHEEPK+INE+YEQGTYIYFD EKW 
Sbjct: 581 IFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQGTYIYFDYEKWG 640

Query: 342 QRKKEGFTFEYKYLEDRDLN 361
           QRKKEGFTFEYKYLEDRDLN
Sbjct: 641 QRKKEGFTFEYKYLEDRDLN 660

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003924|ref|XP_002422910.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505803|gb|EEB10172.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 160/204 (78%), Gaps = 20/204 (9%)

Query: 158 RVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHK 217
           +++AQ  ++K+G+ELP   SD                    AHIP +LGV PLGP PL K
Sbjct: 406 KLMAQQAVEKSGIELPQETSD--------------------AHIPPLLGVAPLGPAPLLK 445

Query: 218 AHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTE 277
            H +Q+Q+++  ++H+P P+D+ER R Y+ R P  TPSYY Q PLPHSDT++FFQRLSTE
Sbjct: 446 EHQFQFQMLEAGFYHMPLPSDTERTRQYLPRNPIQTPSYYSQTPLPHSDTVEFFQRLSTE 505

Query: 278 SLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDN 337
           +LFFIFYYMEGTKAQYL+AKALKKQSWRFHTKYMMWFQRHEEPK+INE+YEQGTYIYFD 
Sbjct: 506 TLFFIFYYMEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKIINEEYEQGTYIYFDY 565

Query: 338 EKWSQRKKEGFTFEYKYLEDRDLN 361
           EKW Q+KKEGFTFEYKYLEDRDLN
Sbjct: 566 EKWGQKKKEGFTFEYKYLEDRDLN 589

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
FB|FBgn0033029	844	l(2)NC136 "lethal (2) NC136" [	0.470	0.201	0.647	5.4e-67
UNIPROTKB|F6XXD6	753	CNOT3 "Uncharacterized protein	0.454	0.217	0.652	1.4e-62
UNIPROTKB|E1BCS1	744	CNOT3 "Uncharacterized protein	0.454	0.220	0.652	4.8e-62
UNIPROTKB|O75175	753	CNOT3 "CCR4-NOT transcription	0.454	0.217	0.652	4.8e-62
MGI|MGI:2385261	751	Cnot3 "CCR4-NOT transcription	0.556	0.267	0.550	1.3e-61
RGD|1304771	751	Cnot3 "CCR4-NOT transcription	0.556	0.267	0.550	2e-61
UNIPROTKB|E2R344	710	CNOT3 "Uncharacterized protein	0.451	0.229	0.646	8.8e-61
ZFIN|ZDB-GENE-040927-6	901	cnot3a "CCR4-NOT transcription	0.459	0.184	0.614	6.4e-58
WB|WBGene00003826	701	ntl-3 [Caenorhabditis elegans	0.459	0.236	0.506	1.3e-44
UNIPROTKB|G5EFX8	701	ntl-3 "Protein NTL-3, isoform	0.459	0.236	0.506	1.3e-44

FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)]

 Score = 639 (230.0 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
 Identities = 110/170 (64%), Positives = 134/170 (78%)

Query:   192 KSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPC 251
             + +A +EAHIP +LGV PLGP PL K H  Q+Q+++ AY+HLP P D+E+L+ Y  R P 
Sbjct:   675 QQMATTEAHIPTLLGVTPLGPTPLQKEHQMQFQMMEAAYYHLPQPMDTEKLQTYFHRAPV 734

Query:   252 TTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYM 311
              TPS+YPQ  +P  DT++F+QRLSTE+LFF+FYYMEG+             SWRFHTKYM
Sbjct:   735 LTPSHYPQAQMPIYDTVEFYQRLSTETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYM 794

Query:   312 MWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
             MWFQRHEEPK+IN+DYEQGTYIYFD EKWSQRKKEGFTFEYKYLED++LN
Sbjct:   795 MWFQRHEEPKIINDDYEQGTYIYFDYEKWSQRKKEGFTFEYKYLEDKELN 844

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 612 (220.5 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 107/164 (65%), Positives = 126/164 (76%)

Query:   197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
             SE +IP  LGV PLGP PL K   YQ  + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct:   589 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 648

Query:   257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
             + Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT             SWRFHTKYMMWFQR
Sbjct:   649 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 708

Query:   317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
             HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct:   709 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 612 (220.5 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 107/164 (65%), Positives = 126/164 (76%)

Query:   197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
             SE +IP  LGV PLGP PL K   YQ  + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct:   580 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 639

Query:   257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
             + Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT             SWRFHTKYMMWFQR
Sbjct:   640 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 699

Query:   317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
             HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct:   700 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 743

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 612 (220.5 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 107/164 (65%), Positives = 126/164 (76%)

Query:   197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
             SE +IP  LGV PLGP PL K   YQ  + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct:   589 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 648

Query:   257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
             + Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT             SWRFHTKYMMWFQR
Sbjct:   649 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 708

Query:   317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
             HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct:   709 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 605 (218.0 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 114/207 (55%), Positives = 139/207 (67%)

Query:   160 IAQDVLDKAGLELPPPA---SDSNSXXXXXXEVYDKSLAP---SEAHIPYMLGVVPLGPQ 213
             +A+     +G+E P P    +D +            S  P   SE +IP  LGV PLGP 
Sbjct:   544 MAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIPLSLGVCPLGPV 603

Query:   214 PLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQR 273
              L K   YQ  + + A+HH+P P+DSER+R Y+ R PC TP Y+ Q+P PHSDT++F+QR
Sbjct:   604 SLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQR 663

Query:   274 LSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINEDYEQGTYI 333
             LSTE+LFFIFYY+EGT             SWRFHTKYMMWFQRHEEPK I +++EQGTYI
Sbjct:   664 LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI 723

Query:   334 YFDNEKWSQRKKEGFTFEYKYLEDRDL 360
             YFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct:   724 YFDYEKWGQRKKEGFTFEYRYLEDRDL 750

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 605 (218.0 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 114/207 (55%), Positives = 139/207 (67%)

Query:   160 IAQDVLDKAGLELPPPA---SDSNSXXXXXXEVYDKSLAP---SEAHIPYMLGVVPLGPQ 213
             +A+     +G+E P P    +D +            S  P   SE +IP  LGV PLGP 
Sbjct:   544 MAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIPLSLGVCPLGPV 603

Query:   214 PLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQR 273
              L K   YQ  + + A+HH+P P+DSER+R Y+ R PC TP Y+ Q+P PHSDT++F+QR
Sbjct:   604 SLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQR 663

Query:   274 LSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINEDYEQGTYI 333
             LSTE+LFFIFYY+EGT             SWRFHTKYMMWFQRHEEPK I +++EQGTYI
Sbjct:   664 LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI 723

Query:   334 YFDNEKWSQRKKEGFTFEYKYLEDRDL 360
             YFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct:   724 YFDYEKWGQRKKEGFTFEYRYLEDRDL 750

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 595 (214.5 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 106/164 (64%), Positives = 125/164 (76%)

Query:   197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
             SE +IP  LGV PLGP PL K   YQ  + + A+HH+P P+DSER+R +  R PC TP Y
Sbjct:   547 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPY 605

Query:   257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
             + Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT             SWRFHTKYMMWFQR
Sbjct:   606 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 665

Query:   317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
             HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct:   666 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 709

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)]

 Score = 579 (208.9 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
 Identities = 102/166 (61%), Positives = 123/166 (74%)

Query:   195 APSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTP 254
             A SE  +P  LG  PLGP PL K   YQ  + + A+ H+P P+DSER+R Y+ R PC TP
Sbjct:   735 AVSEVSLPPSLGACPLGPTPLTKEQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTP 794

Query:   255 SYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWF 314
              ++ Q+P  HSD+++F+QRLSTE+LFFIFYY+EGT             SWRFHTKYMMWF
Sbjct:   795 PFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWF 854

Query:   315 QRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
             QRHEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct:   855 QRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 900

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

WB|WBGene00003826 ntl-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 455 (165.2 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
 Identities = 84/166 (50%), Positives = 108/166 (65%)

Query:   196 PSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPS 255
             P  AHIP  LG  PLG   + +    Q   ++ A      P DSE+ R+Y+++     PS
Sbjct:   536 PKRAHIPAWLGASPLGRTSMTQEFDGQLAALELACAKATFPLDSEKPRNYLSKVSFPVPS 595

Query:   256 YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQ 315
             +Y Q     SD+L+++ RL+ ++LFFIFYYMEGT             SWRFHTKY+ WFQ
Sbjct:   596 WYGQTAPNTSDSLEYYLRLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQ 655

Query:   316 RHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
             RHEEPK I +DYEQGTY+YFD EKWSQRKKE FTFEYK+LED++ +
Sbjct:   656 RHEEPKQITDDYEQGTYVYFDFEKWSQRKKESFTFEYKFLEDKEFD 701

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

UNIPROTKB|G5EFX8 ntl-3 "Protein NTL-3, isoform a" [Caenorhabditis elegans (taxid:6239)]

 Score = 455 (165.2 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
 Identities = 84/166 (50%), Positives = 108/166 (65%)

Query:   196 PSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPS 255
             P  AHIP  LG  PLG   + +    Q   ++ A      P DSE+ R+Y+++     PS
Sbjct:   536 PKRAHIPAWLGASPLGRTSMTQEFDGQLAALELACAKATFPLDSEKPRNYLSKVSFPVPS 595

Query:   256 YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQ 315
             +Y Q     SD+L+++ RL+ ++LFFIFYYMEGT             SWRFHTKY+ WFQ
Sbjct:   596 WYGQTAPNTSDSLEYYLRLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQ 655

Query:   316 RHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
             RHEEPK I +DYEQGTY+YFD EKWSQRKKE FTFEYK+LED++ +
Sbjct:   656 RHEEPKQITDDYEQGTYVYFDFEKWSQRKKESFTFEYKFLEDKEFD 701

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K0V4	CNOT3_MOUSE	No assigned EC number	0.7256	0.4542	0.2183	yes	N/A
O75175	CNOT3_HUMAN	No assigned EC number	0.7317	0.4542	0.2177	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	361
pfam04153	131	pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family	3e-57
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	4e-39
COG5601	172	COG5601, CDC36, General negative regulator of tran	1e-13

>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family

 Score =  182 bits (463), Expect = 3e-57
 Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 4/130 (3%)

Query: 229 AYHHLPTPADS-ERLRHY-ITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYM 286
           ++   P+P+D+ ER   Y I      TPS YPQ P P   +   FQ+   E+LF+IFYYM
Sbjct: 4   SFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPP--LSPSKFQKFDDETLFYIFYYM 61

Query: 287 EGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKE 346
            G   QYLAAK LK + WR+H KY  WF RHEEPK+I ++YE+G+YIYFD E W +R+KE
Sbjct: 62  PGDLQQYLAAKELKNRGWRYHKKYQTWFTRHEEPKVITDEYERGSYIYFDPESWKKRRKE 121

Query: 347 GFTFEYKYLE 356
            FT +Y  LE
Sbjct: 122 NFTLDYSDLE 131

NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Length = 131

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score =  145 bits (367), Expect = 4e-39
 Identities = 77/319 (24%), Positives = 120/319 (37%), Gaps = 32/319 (10%)

Query: 52  PNAPSSEKKNKSKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHN 111
           P AP  E  ++S  ++    ++   +       +   N+  T+ + +    + + +  ++
Sbjct: 250 PIAPGVESASQSISSTPTPVSTDTPLHTVKDDSIKFDNS--TLGTPTTHVSMKKKESEND 307

Query: 112 SLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLE 171
           S   LN        +R T         +    T                 +     A   
Sbjct: 308 SEQQLNFPKDSTDEIRKTI--------QHDVETNA----AFQN--PLFNDELKWWLASKR 353

Query: 172 LPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHH----------Y 221
                    S              P    +      + L  +PL   H            
Sbjct: 354 YLTQPLQEMSPSMVSTLENSLLNCPDSLDVDSP---ICLYTKPLSLPHPTSHFFPNEPIR 410

Query: 222 QYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFF 281
             +  + +    P   D+++   Y    P   PS  P  PL    +   F +   ++LFF
Sbjct: 411 FVEPYNVSLVLTPNENDTDK--KYKPGKPSKAPSKKPDDPLSRFSSARIFMKFDLDTLFF 468

Query: 282 IFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEK-W 340
           IFY+ +GT  QYLAA+ LKK+SWRFH KY  WFQR  EPK I    E+G++ YFD +K W
Sbjct: 469 IFYHYQGTYQQYLAARELKKRSWRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYKKSW 528

Query: 341 SQRKKEGFTFEYKYLEDRD 359
             RKK  F F Y+YLE  +
Sbjct: 529 LARKKNDFVFNYEYLEKLE 547

Length = 548

>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription]

 Score = 68.1 bits (166), Expect = 1e-13
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 253 TPSYYPQVPLP-----HSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFH 307
            P+ YP  P P     + + +        E+LF+IFY       Q  A   L K++WRFH
Sbjct: 64  LPNCYPNAPNPPIFKVNIEDMKMDN-FHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFH 122

Query: 308 TKYMMW--FQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLE 356
                W  F     P   +   E+G+Y++FD   WS+   + F  +YK + 
Sbjct: 123 KMLKCWLTFNPGMSPATADHVKERGSYVFFDPFSWSKVSLD-FLLDYKAVR 172

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG2150|consensus	575		100.0
PF04153	134	NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR	100.0
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	100.0
COG5601	172	CDC36 General negative regulator of transcription	99.92
KOG2151|consensus	312		98.48
KOG2151|consensus	312		98.27

>KOG2150|consensus

Probab=100.00  E-value=2.2e-50  Score=409.70  Aligned_cols=251  Identities=38%  Similarity=0.647  Sum_probs=213.1

Q ss_pred             cccccccccccccccCCCcceeeEEecCcccccccCCCCCCCCCCCCCCCccchHHHHHhhhhhcCCCCCCCCCCCChhh
Q psy4909         104 PQSQQSHNSLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQ  183 (361)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~lsslk~~a~~~~~~~gle~~~~~~~~t~~~  183 (361)
                      +|+-|.-++..+++|+-+-.--  .+.+....+.+.||...........+++|.|.++++   .++.+..+|.+......
T Consensus       318 ~~~~qq~~~~~s~~~P~~~~p~--~~~~~~~~st~~~p~~p~~q~~~~~P~~s~k~~~~~---s~~~~~~vp~~~~~~~~  392 (575)
T KOG2150|consen  318 HQSPQQLRIPLSMPPPHSPTPS--LKRIQHKVSTLDGPRTPPEQSEENTPLSSAKLQASK---SESPPKGVPELEEEAAA  392 (575)
T ss_pred             CCccccccccCCCCCCCCCCcc--ccchhhccccccCCCCCcccccccChhhhchhccCc---ccCCCCCCCcccccccc
Confidence            3444445555566777654433  344555666777776555445567789999999988   67777777777655441


Q ss_pred             hccccccC------CCCCCcccccCCcCCCCCCCCC-CCchhhhhHHHHHHHHhhcCCCCCCcccCCCCCCCCCcCCCCC
Q psy4909         184 QQQQEVYD------KSLAPSEAHIPYMLGVVPLGPQ-PLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY  256 (361)
Q Consensus       184 ~~~~~i~~------~~~~~~~~~ip~~lGv~PlGp~-~ltke~~~q~~mLEaS~~~~P~p~DsErpR~Y~PrnP~ptP~~  256 (361)
                      ..-.-..+      ++....+.++|.++|++|+|++ .+++|++.++.++|+++..||.|.|+|+|+.|.|++|+++|.+
T Consensus       393 ~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~  472 (575)
T KOG2150|consen  393 STLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQSEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSY  472 (575)
T ss_pred             CCCCCCccccccccCCCCccccccchhhccccccccccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCcc
Confidence            11000011      6688899999999999999998 8999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHhhcCCCcceEEEeecCCccHHHHHHHHHHhccCceeeccceeeeeccCCCcccCCceeeeeEEEEc
Q psy4909         257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFD  336 (361)
Q Consensus       257 YPQ~Ppp~~dspe~fqKfd~ETLFYIFYy~PGd~qQ~lAAkELkkRgWRYHKkyktWFqR~~ePk~ite~~EqGtY~YFD  336 (361)
                      |||.+++..++.++|.||+.|||||||||++|+++||+||+||++|+||||++|.+||+|++|||.+++.+|+|+|+|||
T Consensus       473 ~~q~~~~~~ds~~~~~rl~~dTLFfiFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD  552 (575)
T KOG2150|consen  473 FPQTPPSLTDSTEITERLDPDTLFFIFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFD  552 (575)
T ss_pred             CCCCCCcccchhhHHhhccccceeeEEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccceeEecccccccC
Q psy4909         337 NEKWSQRKKEGFTFEYKYLEDRD  359 (361)
Q Consensus       337 ye~W~~r~KedFtFeY~~LEd~~  359 (361)
                      |++|++|.|.||+|+|+|||+.+
T Consensus       553 ~~~W~qrkK~dFtfeY~yLE~~~  575 (575)
T KOG2150|consen  553 YKDWSQRKKIDFTFEYQYLEDSE  575 (575)
T ss_pred             hhHhhhhhccceeeehhhccCCC
Confidence            99999999999999999999864

>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes

Probab=100.00  E-value=3.4e-43  Score=301.05  Aligned_cols=131  Identities=47%  Similarity=0.900  Sum_probs=125.9

Q ss_pred             HHHHhhcCCCCCCc-ccCCCCC-CCCCcCCCCCCCCCCCCC-CCChHHhhcCCCcceEEEeecCCccHHHHHHHHHHhcc
Q psy4909         226 VDQAYHHLPTPADS-ERLRHYI-TRTPCTTPSYYPQVPLPH-SDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQ  302 (361)
Q Consensus       226 LEaS~~~~P~p~Ds-ErpR~Y~-PrnP~ptP~~YPQ~Ppp~-~dspe~fqKfd~ETLFYIFYy~PGd~qQ~lAAkELkkR  302 (361)
                      |+.++.++|+..|+ ++++.|. |+++..+|.+||+.|++. ++.+++|++|++||||||||++|||++|++||+||++|
T Consensus         1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k~~~eTLFyiFY~~p~~~~Q~~AA~eL~~R   80 (134)
T PF04153_consen    1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQKFSEETLFYIFYYMPGDYQQLLAAKELYKR   80 (134)
T ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhhcCCceEEEEEeecCCcHHHHHHHHHHHHC
Confidence            56788999999999 8889997 999999999999999887 88899999999999999999999999999999999999


Q ss_pred             CceeeccceeeeeccCCCcccCCceeeeeEEEEcccccccccccceeEeccccc
Q psy4909         303 SWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLE  356 (361)
Q Consensus       303 gWRYHKkyktWFqR~~ePk~ite~~EqGtY~YFDye~W~~r~KedFtFeY~~LE  356 (361)
                      ||||||++++||+|+++++.+++++|+|+|+|||+++|++++|.||+|+|++||
T Consensus        81 ~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~~W~~~~k~~f~~~y~~LE  134 (134)
T PF04153_consen   81 GWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPESWEKRRKKNFTFDYSDLE  134 (134)
T ss_pred             CcEEecCcCEEeeECCCCCccccceeeeeEEEechHHhcCcchhccEEeHHHcC
Confidence            999999999999999999999999999999999999999999999999999998

This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=6.2e-40  Score=323.64  Aligned_cols=134  Identities=42%  Similarity=0.804  Sum_probs=128.4

Q ss_pred             HHHHHHhhcCCCCCCcccCCCCCCCCCcCCCCCCCCCCCCCCCChHHhhcCCCcceEEEeecCCccHHHHHHHHHHhccC
Q psy4909         224 QLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQS  303 (361)
Q Consensus       224 ~mLEaS~~~~P~p~DsErpR~Y~PrnP~ptP~~YPQ~Ppp~~dspe~fqKfd~ETLFYIFYy~PGd~qQ~lAAkELkkRg  303 (361)
                      ..+.-++-+.|...|.++  .|.|+.|+++|.+||+.|++.+++.++|.+||.||||||||+.+||||||+||+||++|+
T Consensus       413 E~~NiSlV~~Pn~~D~~K--kY~P~~P~~~Ps~~P~~PL~~F~S~~if~k~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~S  490 (548)
T COG5665         413 EPYNVSLVLTPNENDTDK--KYKPGKPSKAPSKKPDDPLSRFSSARIFMKFDLDTLFFIFYHYQGTYQQYLAARELKKRS  490 (548)
T ss_pred             eccccceeecCCcchhhh--ccCCCCCCCCCCCCCCCccccccHHHHHHhcCccceEEEeeeccchHHHHHHHHHHHhhh
Confidence            345567889999999998  799999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccceeeeeccCCCcccCCceeeeeEEEEccc-ccccccccceeEecccccccC
Q psy4909         304 WRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNE-KWSQRKKEGFTFEYKYLEDRD  359 (361)
Q Consensus       304 WRYHKkyktWFqR~~ePk~ite~~EqGtY~YFDye-~W~~r~KedFtFeY~~LEd~~  359 (361)
                      |||||+|.+||||+.+||.||+++|.|+|.||||+ +|..|+|.||+|+|.|||+.+
T Consensus       491 WRFHkKY~TWFQR~~EPK~IT~~~E~Gs~ryFDy~~~W~~rKK~DF~F~Y~YLE~~e  547 (548)
T COG5665         491 WRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYKKSWLARKKNDFVFNYEYLEKLE  547 (548)
T ss_pred             hhhhcchhhhhhhhcccccccCccccCceeEeeccchHHHhhcccceeehhhhhhcc
Confidence            99999999999999999999999999999999999 599999999999999999864

>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]

Probab=99.92  E-value=5e-26  Score=201.79  Aligned_cols=107  Identities=29%  Similarity=0.554  Sum_probs=93.7

Q ss_pred             CCcCCCCCCCCCCCCCCCC----hHHhhcCCCcceEEEeecCCccHHHHHHHHHHhccCceeeccceeeeeccC--CCcc
Q psy4909         249 TPCTTPSYYPQVPLPHSDT----LDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHE--EPKL  322 (361)
Q Consensus       249 nP~ptP~~YPQ~Ppp~~ds----pe~fqKfd~ETLFYIFYy~PGd~qQ~lAAkELkkRgWRYHKkyktWFqR~~--ePk~  322 (361)
                      +.+-+|.|||+.|.+..-+    ...+..|++||||||||.+|+|.+|..|+.||-+|+|||||.+++|++.+.  +|.+
T Consensus        60 p~f~lP~cy~n~p~pp~f~~~~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~  139 (172)
T COG5601          60 PMFMLPNCYPNAPNPPIFKVNIEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPAT  139 (172)
T ss_pred             chhcCccccCCCCCCCceecchHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccc
Confidence            4466899999998653222    234678999999999999999999999999999999999999999999984  6778


Q ss_pred             cCCceeeeeEEEEcccccccccccceeEeccccc
Q psy4909         323 INEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLE  356 (361)
Q Consensus       323 ite~~EqGtY~YFDye~W~~r~KedFtFeY~~LE  356 (361)
                      .++..|+|.|++||+..|+++.+ ||.|+|+.++
T Consensus       140 ~~~~~ergsyvfFDP~~W~k~~~-dfll~y~av~  172 (172)
T COG5601         140 ADHVKERGSYVFFDPFSWSKVSL-DFLLDYKAVR  172 (172)
T ss_pred             cccccccceEEEEcchhHHHHhH-HHHHHHHhhC
Confidence            88889999999999999999997 5999998774

>KOG2151|consensus

Probab=98.48  E-value=9e-08  Score=93.81  Aligned_cols=71  Identities=25%  Similarity=0.414  Sum_probs=54.6

Q ss_pred             HhhcCCCCCCcccCCCCCCCCCcCCCCCCCCCCCCCCCChHHhhcCCCcceEEEeecCCccHHHHHHHHHHhccCc
Q psy4909         229 AYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSW  304 (361)
Q Consensus       229 S~~~~P~p~DsErpR~Y~PrnP~ptP~~YPQ~Ppp~~dspe~fqKfd~ETLFYIFYy~PGd~qQ~lAAkELkkRgW  304 (361)
                      .+.++-.||-...++   -+..+..|.||....+...  .....+|++|||||+||.++||..|..||.||.+|+|
T Consensus       242 i~~~F~~P~~~~P~~---~~~~~~lp~~y~~v~~~~~--~~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w  312 (312)
T KOG2151|consen  242 IIPTFQGPWGEVPTS---QEASFNLPNCYLNVNPKLQ--FSKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW  312 (312)
T ss_pred             ccccccCCcccCCcc---cchhhhcchhhhccCCccc--hHHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence            444555565555444   3445668899988655442  3347899999999999999999999999999999999

>KOG2151|consensus

Probab=98.27  E-value=3.6e-07  Score=89.64  Aligned_cols=78  Identities=31%  Similarity=0.712  Sum_probs=71.2

Q ss_pred             hhcCCCcceEEEeecCCccHHHHHHHHHHhccCceeeccceeeeecc--CCCcccCCceeeeeEEEEcccccccccccce
Q psy4909         271 FQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRH--EEPKLINEDYEQGTYIYFDNEKWSQRKKEGF  348 (361)
Q Consensus       271 fqKfd~ETLFYIFYy~PGd~qQ~lAAkELkkRgWRYHKkyktWFqR~--~ePk~ite~~EqGtY~YFDye~W~~r~KedF  348 (361)
                      ..++...-|||+||+.|        |.||..|.||||++.+.|+.+.  +.++..+++++.|.|..||...|+...|+ -
T Consensus        96 ~~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~s~~~~~ke-~  166 (312)
T KOG2151|consen   96 LNKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQMSWRKIPKE-L  166 (312)
T ss_pred             ccccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccchhhhhcccc-h
Confidence            67899999999999999        9999999999999999999996  46777888999999999999999999986 7


Q ss_pred             eEecccccc
Q psy4909         349 TFEYKYLED  357 (361)
Q Consensus       349 tFeY~~LEd  357 (361)
                      .+.|..+|+
T Consensus       167 ~l~~~~~~~  175 (312)
T KOG2151|consen  167 KLAYSDLED  175 (312)
T ss_pred             hhccccccc
Confidence            788888876

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00