Psyllid ID: psy4987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MSETEENIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTSIK
Secondary Structure (PSIPRED)
cccccccEEEEEEEEEcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEcEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEEEcHHHHccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHcHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEEEccccccEEEEEEccccccccccccccHHHEcccccccccccccccccccEEEcHHHHccccccEEEEEEEEEEEccccccccccccccccHHHHccccccEcccccccccccEEEEEcccccccccEEEEEEEEEEccHHHHHcccccccHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MSETEENIILHVLVVGfhhkkgcqvfffcnfhnsggesvkgtlpgilalpyspplppenckrghREVLIGLADLYQFSFNIQCYVKFQVeyafppliegtssesnecpsewkylptlalpdgshnyeedtvyfhlpsltdskktvfgiscfrqipveklknqtadltrntVQKSVCVLSTVPLYGHVQVKMALITHAyfeegdfskvSLLKDTYHHLNSCLSQiedlsnapqlfVGLSARELILKFRHNALLLFKLLLLERKCvfycspvkplCSTILSLLSLHPSMIETGLAKSTSIK
Flexible Loop (DISEMBL)
MSETEENIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEklknqtadltrntvQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLslhpsmietglakstsik
Low Complexity Region (SEG)
MSETEENIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAlllfkllllERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTSIK
Disordered region (IsUnstruct)
******NIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEG********PSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMI***********
Disordered Region (DISOPRED)
*****EN*ILHVLVVGFHHKKGCQVF*********************************************ADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLK*****LTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSC*******SNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKS****
Disordered Region (DISEMBL)
MSETEENIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEG*********SEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTSIK
Disordered Region (DISPRO)
****EENIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSETEENIILHVLVVGFHHKKGCQVFFFCNFHNSGGESVKGTLPGILALPYSPPLPPENCKRGHREVLIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTSIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q8NBF6	648	Late secretory pathway pr	yes	N/A	0.682	0.314	0.577	3e-66
Q5R991	630	Late secretory pathway pr	yes	N/A	0.682	0.323	0.577	3e-66
Q80U56	649	Late secretory pathway pr	yes	N/A	0.682	0.314	0.572	2e-65
O13943	469	Late secretory pathway pr	yes	N/A	0.678	0.432	0.379	1e-30
Q12500	764	Late secretory pathway pr	yes	N/A	0.668	0.261	0.341	3e-30

>sp|Q8NBF6|AVL9_HUMAN Late secretory pathway protein AVL9 homolog OS=Homo sapiens GN=AVL9 PE=1 SV=1

 Score =  251 bits (642), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 154/206 (74%), Gaps = 2/206 (0%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  TVFG
Sbjct: 31  QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVFG 90

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct: 91  ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           S+LK+ Y H+NS L          Q+++GLS R+L+L FRH  L+LFKL+LLE+K +FY 
Sbjct: 151 SILKELYEHMNSSLGGAS--LEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLA 293
           SPV  L   ++++LSL P MIE GL+
Sbjct: 209 SPVNKLVGALMTVLSLFPGMIEHGLS 234

Homo sapiens (taxid: 9606)

>sp|Q5R991|AVL9_PONAB Late secretory pathway protein AVL9 homolog OS=Pongo abelii GN=AVL9 PE=2 SV=1

 Score =  251 bits (642), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 154/206 (74%), Gaps = 2/206 (0%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  TVFG
Sbjct: 31  QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVFG 90

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct: 91  ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           S+LK+ Y H+NS L          Q+++GLS R+L+L FRH  L+LFKL+LLE+K +FY 
Sbjct: 151 SILKELYEHMNSSLGGAS--LEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLA 293
           SPV  L   ++++LSL P MIE GL+
Sbjct: 209 SPVNKLVGALMTVLSLFPGMIEHGLS 234

Pongo abelii (taxid: 9601)

>sp|Q80U56|AVL9_MOUSE Late secretory pathway protein AVL9 homolog OS=Mus musculus GN=Avl9 PE=2 SV=2

 Score =  249 bits (636), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/206 (57%), Positives = 154/206 (74%), Gaps = 2/206 (0%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  TV+G
Sbjct: 31  QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVYG 90

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct: 91  ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           S+LK+ Y H+NS L          Q+++GLS R+L+L FRH  L+LFKL+LLE+K +FY 
Sbjct: 151 SILKELYEHMNSSLGGAS--LEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLA 293
           SPV  L   ++++LSL P MIE GL+
Sbjct: 209 SPVNRLVGALMTVLSLFPGMIEHGLS 234

Mus musculus (taxid: 10090)

>sp|O13943|AVL9_SCHPO Late secretory pathway protein avl9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avl9 PE=3 SV=2

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 8/211 (3%)

Query: 78  SFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPS 137
           SF + C       +   P IE    ES + P EW  LP L+LPDG+H+ E+D VYF LP 
Sbjct: 7   SFQVLCLATIGFHHLRGPEIEHLFPESMDFPKEWSILPFLSLPDGAHSSEKDFVYFTLPF 66

Query: 138 LTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHA 197
             D + TVFG+SC RQ+    LKN  +D+TR++VQK+V V++T P +GH++  + ++T+A
Sbjct: 67  PND-EGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAVVVITTSPPFGHIKDNLDIVTNA 125

Query: 198 YFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLL 257
           YF +GDFS + +L+D +H L      +        + + ++ +  + ++R NAL+L K+L
Sbjct: 126 YFSQGDFSNLDVLRDFFHVLTRKEQDV-------HIALNINLKSFLCEWRQNALVLLKVL 178

Query: 258 LLERKCVFYCSPVKPLCSTILSLLSLHPSMI 288
           LL ++ + Y    + L +   SLLSL P M+
Sbjct: 179 LLGKRILVYDKSAERLGNFQYSLLSLIPCMM 209

Functions in the late secretory pathway. Required for the generation of secretory vesicles as well as for actin polarization and polarized growth.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12500|AVL9_YEAST Late secretory pathway protein AVL9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVL9 PE=1 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 31/231 (13%)

Query: 83  CYVKF------QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHL- 135
           C V F      ++EY +  L EGT S        W  LP  ALPDGSH++EE   YF L 
Sbjct: 13  CLVDFHHKRGPEIEYWYG-LPEGTQS-----AELWPNLPFQALPDGSHSFEETFTYFTLL 66

Query: 136 -------------PSLTDS----KKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVL 178
                          L+D       T+F ISC RQI  ++L  +  D+TR+TVQK++ V+
Sbjct: 67  YDERRQRSPPNGATDLSDDSINDNTTLFAISCSRQIKSDELVTKDKDVTRSTVQKAIVVI 126

Query: 179 STVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAP-QLFVGL 237
           S  P++G ++ K++++T+A+F + DF    +++  Y +L S  +    + NA  +L++GL
Sbjct: 127 SRQPIFGQIKDKLSIVTNAFFLQHDFGDRKIIQSLYENLKSIYTPASLVRNAENRLYIGL 186

Query: 238 SARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMI 288
             R+++  F+ NAL+L K ++LE+K + Y + V+ LC+    L+SL P ++
Sbjct: 187 CLRKILHDFKRNALVLLKAIMLEKKIIVYGNDVEALCNLQFGLISLIPDLM 237

Functions in the late secretory pathway. Required for the generation of secretory vesicles as well as for actin polarization and polarized growth.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
307211213	706	Uncharacterized protein KIAA0241 [Harpeg	0.692	0.293	0.745	2e-83
332027286	679	Late secretory pathway protein AVL9-like	0.692	0.304	0.740	7e-83
307180212	677	Uncharacterized protein KIAA0241 [Campon	0.692	0.305	0.740	3e-82
322786136	677	hypothetical protein SINV_02068 [Solenop	0.692	0.305	0.735	4e-82
340729163	679	PREDICTED: LOW QUALITY PROTEIN: late sec	0.692	0.304	0.735	5e-82
328720187	566	PREDICTED: late secretory pathway protei	0.709	0.374	0.698	2e-81
345490864	661	PREDICTED: late secretory pathway protei	0.692	0.313	0.721	4e-81
380013868	657	PREDICTED: LOW QUALITY PROTEIN: late sec	0.692	0.315	0.731	6e-81
328791054	672	PREDICTED: late secretory pathway protei	0.692	0.308	0.726	7e-81
350401438	679	PREDICTED: late secretory pathway protei	0.692	0.304	0.735	2e-80

>gi|307211213|gb|EFN87413.1| Uncharacterized protein KIAA0241 [Harpegnathos saltator]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 158/212 (74%), Positives = 184/212 (86%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL D K+T++G
Sbjct: 23  QVEYSFPPLVPGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNDPKRTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYFEEGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFEEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DTYHHLNSC+S   D    PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE++ VFY 
Sbjct: 140 SLLEDTYHHLNSCMSG--DSQIPPQIFVGLSARDFILQFRHKVLLLFKLLLLEKRIVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+TIL+LLSL+P MIE GL ++  ++
Sbjct: 198 SPVQPLCATILTLLSLYPGMIEHGLQQAACVR 229

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027286|gb|EGI67370.1| Late secretory pathway protein AVL9-like protein [Acromyrmex echinatior]

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 157/212 (74%), Positives = 183/212 (86%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL D K+T++G
Sbjct: 23  QVEYSFPPLVPGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNDPKRTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYFEEGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFEEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DTYHHLNSC+S    +   PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE++ VFY 
Sbjct: 140 SLLEDTYHHLNSCMSGESQI--PPQIFVGLSARDFILQFRHKVLLLFKLLLLEKRIVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+TIL+LLSL P MIE GL ++  ++
Sbjct: 198 SPVQPLCATILTLLSLFPDMIEHGLQQAACVR 229

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180212|gb|EFN68245.1| Uncharacterized protein KIAA0241 [Camponotus floridanus]

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 157/212 (74%), Positives = 183/212 (86%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL D K T++G
Sbjct: 23  QVEYSFPPLVPGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNDPKCTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYF+EGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFDEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DTYHHLNSC+S   D    PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE++ VFY 
Sbjct: 140 SLLEDTYHHLNSCMSG--DSQIPPQIFVGLSARDFILQFRHKVLLLFKLLLLEKRIVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+TIL+LLSL+P MIE GL ++  ++
Sbjct: 198 SPVQPLCATILTLLSLYPGMIEHGLQQAACVR 229

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786136|gb|EFZ12743.1| hypothetical protein SINV_02068 [Solenopsis invicta]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 156/212 (73%), Positives = 182/212 (85%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+       NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL D K+T++G
Sbjct: 23  QVEYSFPPLVPDAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNDPKRTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYFEEGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFEEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DTYHHLNSC+S    +   PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE++ VFY 
Sbjct: 140 SLLEDTYHHLNSCMSGESQI--PPQIFVGLSARDFILQFRHKVLLLFKLLLLEKRIVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+TIL+LLSL P MIE GL ++  ++
Sbjct: 198 SPVQPLCATILTLLSLFPDMIEHGLQQAACVR 229

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729163|ref|XP_003402877.1| PREDICTED: LOW QUALITY PROTEIN: late secretory pathway protein AVL9 homolog [Bombus terrestris]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 156/212 (73%), Positives = 183/212 (86%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL + K+T++G
Sbjct: 23  QVEYSFPPLVPGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNNPKRTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYFEEGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFEEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DTYHHLNSC+S    +   PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE+  VFY 
Sbjct: 140 SLLEDTYHHLNSCMSCESQI--PPQIFVGLSARDFILQFRHKVLLLFKLLLLEKXIVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+TIL+LLSL+P MIE GL ++  ++
Sbjct: 198 SPVQPLCATILTLLSLYPGMIEHGLQQAACVR 229

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720187|ref|XP_001950738.2| PREDICTED: late secretory pathway protein AVL9 homolog [Acyrthosiphon pisum]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/212 (69%), Positives = 182/212 (85%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEYA+PP IE T+  S ECP+ WK+LP LALPDGSHN++EDT YFHLPS  D  +T++G
Sbjct: 21  QVEYAYPPFIEDTTGVSAECPAAWKHLPYLALPDGSHNFDEDTAYFHLPSQQDPNETIYG 80

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISC+RQIP+EK+ N+T D+TR+T+QKSVCVLST+PLYGH+QVKM+LITHAYFEEGDFSK+
Sbjct: 81  ISCYRQIPLEKIINRTPDMTRSTIQKSVCVLSTLPLYGHIQVKMSLITHAYFEEGDFSKI 140

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL DTYHHLN+CLS I+++S +P LFVGLSA EL+ +FRH  LLLFKL+LLE K +F+ 
Sbjct: 141 SLLHDTYHHLNACLSSIDNISTSPHLFVGLSAVELVTRFRHKVLLLFKLMLLENKVLFFY 200

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLCSTIL+LLSLHP +IE GL KS +I 
Sbjct: 201 SPVRPLCSTILTLLSLHPGLIENGLNKSANIN 232

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490864|ref|XP_001601653.2| PREDICTED: late secretory pathway protein AVL9 homolog [Nasonia vitripennis]

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 153/212 (72%), Positives = 182/212 (85%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL D  +T++G
Sbjct: 23  QVEYSFPPLVPGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNDPNRTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           +SCF+QIPVEKL N+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYF+EGDFSKV
Sbjct: 80  VSCFKQIPVEKLVNRTSDITRGTVQKSVCVLSTIPLYGHIQVKMALITHAYFDEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL++TYHHLNSC+S   D    PQ+F+GLSAR+ IL+FRH ALLLFKLLLLE++ VFY 
Sbjct: 140 SLLEETYHHLNSCMSG--DSHMPPQVFIGLSARDFILQFRHKALLLFKLLLLEKRVVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLCS IL+LLSL P MIETGL ++  ++
Sbjct: 198 SPVQPLCSAILTLLSLFPGMIETGLQQAACVR 229

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013868|ref|XP_003690967.1| PREDICTED: LOW QUALITY PROTEIN: late secretory pathway protein AVL9 homolog [Apis florea]

 Score =  306 bits (785), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 155/212 (73%), Positives = 182/212 (85%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL + K T++G
Sbjct: 23  QVEYSFPPLVPGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNNPKCTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYFEEGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFEEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DTYHHLNSC+S    +   PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE++ VFY 
Sbjct: 140 SLLEDTYHHLNSCMSCESQI--PPQIFVGLSARDFILQFRHKVLLLFKLLLLEKRIVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+ IL+LLSL+P MIE GL ++  ++
Sbjct: 198 SPVQPLCAAILTLLSLYPGMIEHGLQQAACVR 229

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791054|ref|XP_624093.2| PREDICTED: late secretory pathway protein AVL9 homolog [Apis mellifera]

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 154/212 (72%), Positives = 182/212 (85%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL + K T++G
Sbjct: 23  QVEYSFPPLVPGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNNPKCTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYFEEGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFEEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DTYHHLNSC+S    +   PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE++ +FY 
Sbjct: 140 SLLEDTYHHLNSCMSCESQI--PPQIFVGLSARDFILQFRHKVLLLFKLLLLEKRIIFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+ IL+LLSL+P MIE GL ++  ++
Sbjct: 198 SPVQPLCAAILTLLSLYPGMIEHGLQQAACVR 229

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401438|ref|XP_003486152.1| PREDICTED: late secretory pathway protein AVL9 homolog [Bombus impatiens]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/212 (73%), Positives = 184/212 (86%), Gaps = 5/212 (2%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
           QVEY+FPPL+ G     NECP  WKYLPTLALPDGSHNY+EDTVYFHLPSL + K+T++G
Sbjct: 23  QVEYSFPPLVSGAP---NECPLGWKYLPTLALPDGSHNYDEDTVYFHLPSLNNPKRTIYG 79

Query: 148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
           ISCFRQIPVEKLKN+T+D+TR TVQKSVCVLST+PLYGH+QVKMALITHAYFEEGDFSKV
Sbjct: 80  ISCFRQIPVEKLKNRTSDITRGTVQKSVCVLSTLPLYGHIQVKMALITHAYFEEGDFSKV 139

Query: 208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYC 267
           SLL+DT+HHLNSC+S    +   PQ+FVGLSAR+ IL+FRH  LLLFKLLLLE+K VFY 
Sbjct: 140 SLLEDTFHHLNSCMSCESQI--PPQIFVGLSARDFILQFRHKVLLLFKLLLLEKKIVFYQ 197

Query: 268 SPVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
           SPV+PLC+TIL+LLSL+P MIE GL ++  ++
Sbjct: 198 SPVQPLCATILTLLSLYPGMIEHGLQQAACVR 229

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
UNIPROTKB|F1NIK0	645	AVL9 "Uncharacterized protein"	0.692	0.320	0.535	2e-65
UNIPROTKB|Q8NBF6	648	AVL9 "Late secretory pathway p	0.682	0.314	0.548	4.2e-65
UNIPROTKB|Q5R991	630	AVL9 "Late secretory pathway p	0.682	0.323	0.548	4.2e-65
RGD|1564615	649	Avl9 "AVL9 homolog (S. cerevis	0.682	0.314	0.543	5.4e-65
MGI|MGI:1926187	649	Avl9 "AVL9 homolog (S. cerevis	0.682	0.314	0.543	1.1e-64
UNIPROTKB|I3LVD3	565	AVL9 "Uncharacterized protein"	0.655	0.346	0.540	1.8e-62
ZFIN|ZDB-GENE-060825-261	587	zgc:153609 "zgc:153609" [Danio	0.692	0.352	0.502	1.1e-60
UNIPROTKB|F1N025	616	AVL9 "Uncharacterized protein"	0.698	0.339	0.526	7.5e-57
UNIPROTKB|F1Q1F8	618	AVL9 "Uncharacterized protein"	0.678	0.328	0.541	2.5e-56
POMBASE|SPAC23H3.14	469	SPAC23H3.14 "LAlv9 family prot	0.678	0.432	0.360	9e-34

UNIPROTKB|F1NIK0 AVL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 592 (213.5 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 112/209 (53%), Positives = 147/209 (70%)

Query:    88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
             QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP     + TV+G
Sbjct:    32 QVEFSYPPLIPGEGHDSHNLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRCGDRTTVYG 91

Query:   148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
             +SC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct:    92 VSCYRQIEAKALKVRQADITRETVQKSVCVLSQLPLYGLLQAKLQLITHAYFEEKDFSQI 151

Query:   208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYC 267
             S+LK+ Y H+NS L     L    Q+++GLS R+L+L FRH           E+K +FY 
Sbjct:   152 SILKELYDHMNSSLGGT--LLEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 209

Query:   268 SPVKPLCSTILSLLSLHPSMIETGLAKST 296
             SPV  L   ++++LSL P MIE GL  S+
Sbjct:   210 SPVNRLVGALMTVLSLFPGMIEHGLTDSS 238

GO:0016477 "cell migration" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

UNIPROTKB|Q8NBF6 AVL9 "Late secretory pathway protein AVL9 homolog" [Homo sapiens (taxid:9606)]

 Score = 589 (212.4 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 113/206 (54%), Positives = 147/206 (71%)

Query:    88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
             QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  TVFG
Sbjct:    31 QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVFG 90

Query:   148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
             ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct:    91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query:   208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYC 267
             S+LK+ Y H+NS L     L  + Q+++GLS R+L+L FRH           E+K +FY 
Sbjct:   151 SILKELYEHMNSSLGGAS-LEGS-QVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query:   268 SPVKPLCSTILSLLSLHPSMIETGLA 293
             SPV  L   ++++LSL P MIE GL+
Sbjct:   209 SPVNKLVGALMTVLSLFPGMIEHGLS 234

GO:0016021 "integral to membrane" evidence=IEA

GO:0055037 "recycling endosome" evidence=IDA

GO:0016477 "cell migration" evidence=IDA

UNIPROTKB|Q5R991 AVL9 "Late secretory pathway protein AVL9 homolog" [Pongo abelii (taxid:9601)]

 Score = 589 (212.4 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 113/206 (54%), Positives = 147/206 (71%)

Query:    88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
             QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  TVFG
Sbjct:    31 QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVFG 90

Query:   148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
             ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct:    91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query:   208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYC 267
             S+LK+ Y H+NS L     L  + Q+++GLS R+L+L FRH           E+K +FY 
Sbjct:   151 SILKELYEHMNSSLGGAS-LEGS-QVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query:   268 SPVKPLCSTILSLLSLHPSMIETGLA 293
             SPV  L   ++++LSL P MIE GL+
Sbjct:   209 SPVNKLVGALMTVLSLFPGMIEHGLS 234

GO:0016477 "cell migration" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

RGD|1564615 Avl9 "AVL9 homolog (S. cerevisiase)" [Rattus norvegicus (taxid:10116)]

 Score = 588 (212.0 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 112/206 (54%), Positives = 148/206 (71%)

Query:    88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
             QVE+++PPLI G   +S+  P EWKYLP+LALPDG+HNY+EDTV+FHLP    +  TV+G
Sbjct:    31 QVEFSYPPLIPGDGHDSHAVPEEWKYLPSLALPDGAHNYQEDTVFFHLPPRNGNGATVYG 90

Query:   148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
             ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct:    91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query:   208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYC 267
             S+LK+ Y H+NS L     L  + Q+++GLS R+L+L FRH           E+K +FY 
Sbjct:   151 SILKELYEHMNSSLGGAS-LEGS-QVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query:   268 SPVKPLCSTILSLLSLHPSMIETGLA 293
             SPV  L   ++++LSL P MIE GL+
Sbjct:   209 SPVNRLVGALMTVLSLFPGMIEHGLS 234

GO:0016477 "cell migration" evidence=IEA;ISO

GO:0055037 "recycling endosome" evidence=IEA;ISO

MGI|MGI:1926187 Avl9 "AVL9 homolog (S. cerevisiase)" [Mus musculus (taxid:10090)]

 Score = 585 (211.0 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
 Identities = 112/206 (54%), Positives = 147/206 (71%)

Query:    88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
             QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  TV+G
Sbjct:    31 QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVYG 90

Query:   148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
             ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct:    91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query:   208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYC 267
             S+LK+ Y H+NS L     L  + Q+++GLS R+L+L FRH           E+K +FY 
Sbjct:   151 SILKELYEHMNSSLGGAS-LEGS-QVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query:   268 SPVKPLCSTILSLLSLHPSMIETGLA 293
             SPV  L   ++++LSL P MIE GL+
Sbjct:   209 SPVNRLVGALMTVLSLFPGMIEHGLS 234

GO:0003674 "molecular_function" evidence=ND

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO

UNIPROTKB|I3LVD3 AVL9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 564 (203.6 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 107/198 (54%), Positives = 142/198 (71%)

Query:    88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
             QVE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP  + +  TV+G
Sbjct:    31 QVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRSGNGATVYG 90

Query:   148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKV 207
             ISC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++
Sbjct:    91 ISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQI 150

Query:   208 SLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYC 267
             S+LK+ Y H+NS L     L  + Q+++GLS R+L+L FRH           E+K +FY 
Sbjct:   151 SILKELYEHMNSSLGGTS-LEGS-QVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYI 208

Query:   268 SPVKPLCSTILSLLSLHP 285
             SPV  L   ++++LSL P
Sbjct:   209 SPVNKLVGALMTVLSLFP 226

GO:0055037 "recycling endosome" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

ZFIN|ZDB-GENE-060825-261 zgc:153609 "zgc:153609" [Danio rerio (taxid:7955)]

 Score = 539 (194.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 106/211 (50%), Positives = 146/211 (69%)

Query:    88 QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFG 147
             QVE+++PP+I     +S+  P EWKYLP LALPDG+HN++ DTVYFHLP L    K V+G
Sbjct:    25 QVEFSYPPIIPSAGHDSSTLPEEWKYLPFLALPDGAHNHQSDTVYFHLPPLDGQLKCVYG 84

Query:   148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFS-K 206
             +SC+RQ+  + LK + AD+TR TVQKSVCVLS +PL+G +Q K+ LITHAYFEE D S  
Sbjct:    85 VSCYRQMEAKALKKREADVTRETVQKSVCVLSRLPLFGLIQAKLQLITHAYFEEKDGSYN 144

Query:   207 VSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFY 266
             +S+ ++ Y H+N  L+    L  + Q+++ LSAR+LIL F+H           E+K +FY
Sbjct:   145 LSVPEELYDHMNRSLN-CTSLEGS-QIYLSLSARDLILHFKHKVLVLFKLILLEKKILFY 202

Query:   267 CSPVKPLCSTILSLLSLHPS-MIETGLAKST 296
              +PVK L  T++++LSL P  MIE GLA S+
Sbjct:   203 VTPVKRLVETLMTILSLFPGCMIEYGLADSS 233

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1N025 AVL9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 111/211 (52%), Positives = 149/211 (70%)

Query:    89 VEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGI 148
             VE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  T++GI
Sbjct:     1 VEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATIYGI 60

Query:   149 SCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVS 208
             SC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++S
Sbjct:    61 SCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQIS 120

Query:   209 LLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYCS 268
             +LK+ Y H+NS L     L  + Q+++GLS R+L+L FRH           E+K +FY S
Sbjct:   121 ILKELYEHMNSSLGGTS-LEGS-QVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYIS 178

Query:   269 PVKPLCSTILSLLSLHPSMIETGLAKSTSIK 299
             PV  L   ++++LSL P MIE GL+ S+  +
Sbjct:   179 PVNKLVGALMTVLSLFPGMIEHGLSDSSQYR 209

GO:0055037 "recycling endosome" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

UNIPROTKB|F1Q1F8 AVL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 111/205 (54%), Positives = 146/205 (71%)

Query:    89 VEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGI 148
             VE+++PPLI G   +S+  P EWKYLP LALPDG+HNY+EDTV+FHLP    +  TV+GI
Sbjct:     1 VEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGATVYGI 60

Query:   149 SCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVS 208
             SC+RQI  + LK + AD+TR TVQKSVCVLS +PLYG +Q K+ LITHAYFEE DFS++S
Sbjct:    61 SCYRQIEAKALKVRQADVTRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQIS 120

Query:   209 LLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXXXXERKCVFYCS 268
             +LK+ Y H+NS L     L  + Q+++GLS R+L+L FRH           E+K +FY S
Sbjct:   121 ILKELYEHMNSSLGGTS-LEGS-QVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYIS 178

Query:   269 PVKPLCSTILSLLSLHPSMIETGLA 293
             PV  L   ++++LSL P MIE GL+
Sbjct:   179 PVNKLVGALMTVLSLFPGMIEHGLS 203

GO:0055037 "recycling endosome" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

POMBASE|SPAC23H3.14 SPAC23H3.14 "LAlv9 family protein, involved in post Golgi transport (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 340 (124.7 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
 Identities = 76/211 (36%), Positives = 121/211 (57%)

Query:    78 SFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPS 137
             SF + C       +   P IE    ES + P EW  LP L+LPDG+H+ E+D VYF LP 
Sbjct:     7 SFQVLCLATIGFHHLRGPEIEHLFPESMDFPKEWSILPFLSLPDGAHSSEKDFVYFTLPF 66

Query:   138 LTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHA 197
               D + TVFG+SC RQ+    LKN  +D+TR++VQK+V V++T P +GH++  + ++T+A
Sbjct:    67 PND-EGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAVVVITTSPPFGHIKDNLDIVTNA 125

Query:   198 YFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGLSARELILKFRHNAXXXXXXX 257
             YF +GDFS + +L+D +H L     + +D+  A    + ++ +  + ++R NA       
Sbjct:   126 YFSQGDFSNLDVLRDFFHVLTR---KEQDVHIA----LNINLKSFLCEWRQNALVLLKVL 178

Query:   258 XXERKCVFYCSPVKPLCSTILSLLSLHPSMI 288
                ++ + Y    + L +   SLLSL P M+
Sbjct:   179 LLGKRILVYDKSAERLGNFQYSLLSLIPCMM 209

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8NBF6	AVL9_HUMAN	No assigned EC number	0.5776	0.6822	0.3148	yes	N/A
Q80U56	AVL9_MOUSE	No assigned EC number	0.5728	0.6822	0.3143	yes	N/A
Q5R991	AVL9_PONAB	No assigned EC number	0.5776	0.6822	0.3238	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	299
pfam09794	379	pfam09794, Avl9, Transport protein Avl9	3e-90
pfam07792	57	pfam07792, Afi1, Docking domain of Afi1 for Arf3 i	6e-08
pfam09804	496	pfam09804, DUF2347, Uncharacterized conserved prot	3e-05
pfam09794	379	pfam09794, Avl9, Transport protein Avl9	5e-04

>gnl|CDD|220407 pfam09794, Avl9, Transport protein Avl9

 Score =  272 bits (699), Expect = 3e-90
 Identities = 109/230 (47%), Positives = 148/230 (64%), Gaps = 23/230 (10%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLP---SLTDSKKT 144
           +VE+ +P L      E ++ PS WK LP LALPDGSHN+EED  YF L      T    T
Sbjct: 16  EVEFWYPGL-----DEDSDDPSLWKNLPFLALPDGSHNFEEDFSYFTLLYDEPDTRPATT 70

Query: 145 VFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDF 204
           +FGISC+RQI    LKN+ AD+TR+TVQK+V V+S  P++G ++ K+++IT+AYFE+GDF
Sbjct: 71  LFGISCYRQIKSSDLKNRPADVTRSTVQKAVVVISRQPIFGQIKDKLSIITNAYFEQGDF 130

Query: 205 SKVSLLKDTYHHLNSCLSQIEDLSNA-PQLFVGLSARELILKFRHNALLLFKLLLLERKC 263
           S   +L   Y +LN+    +         L+VGLS REL+LKFRH  L+LFKLLLLE+K 
Sbjct: 131 SDTDILVSLYENLNATFKSLGGEELEESDLYVGLSLRELVLKFRHKTLVLFKLLLLEKKV 190

Query: 264 VFYCSPVKPLCSTILSLLSLHPSMI--------------ETGLAKSTSIK 299
           +FY SPV+ LC+  +SLLSL P ++              E+ L+K TS+K
Sbjct: 191 LFYGSPVERLCNLQMSLLSLIPGLLSNLQDSGSPSLDSYESNLSKPTSLK 240

Avl9 is a protein involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo. Length = 379

>gnl|CDD|219579 pfam07792, Afi1, Docking domain of Afi1 for Arf3 in vesicle trafficking

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 88  QVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLP 136
            VE+ +P              S+   LP L+LPDG H  EED  YF L 
Sbjct: 16  VVEWQYPK---------PLGESDLSNLPFLSLPDGIHEREEDFTYFRLR 55

This domain occurs at the N-terminal of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth. Length = 57

>gnl|CDD|220412 pfam09804, DUF2347, Uncharacterized conserved protein (DUF2347)

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 55/216 (25%), Positives = 76/216 (35%), Gaps = 47/216 (21%)

Query: 118 ALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCV 177
           +LP G H   ED VYF         K  +G+S FRQ P E+ +N      RN    SV V
Sbjct: 35  SLPSGIHEVSEDLVYFVHE------KEYYGLSAFRQNPAEEEEND----RRNVKMYSVGV 84

Query: 178 LSTVPL-YGHV--------------------QVKMALITHAY----FEEGDFSKVSLLKD 212
           L  VPL  G +                    + K  ++   +      +      S    
Sbjct: 85  L--VPLSNGFIGASWRYAEKLKELLSSWLQDEDKYEILEEYWETNKSSDLKKPSPSPDSP 142

Query: 213 TYHHLNSCLSQIEDLSNAPQLFVGLSAR-------ELILKFRHNALLLFKLLLLERKCVF 265
                +  L   + L         LS         EL+ K       L+K  LL ++ + 
Sbjct: 143 LDSPSSLRLGAPDSLFRNRAGSDALSPFHPLSSLPELLDKLGPLIFPLYKAALLRKRILI 202

Query: 266 YCS-PVKPLCSTI--LSLLSLHPSMIETGLAKSTSI 298
           +   PV  LCS +  LSLLSL P  +   L    S 
Sbjct: 203 FSEAPVSLLCSFVYCLSLLSLIPLSLLALLGSPASY 238

Members of this family of hypothetical proteins have no known function. Length = 496

>gnl|CDD|220407 pfam09794, Avl9, Transport protein Avl9

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 9  ILHVLVVGFHHKKGCQV-FFFCNFH 32
          IL + VV FHHK+G +V F++    
Sbjct: 1  ILGICVVDFHHKRGPEVEFWYPGLD 25

Avl9 is a protein involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo. Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PF09794	379	Avl9: Transport protein Avl9; InterPro: IPR018307	100.0
KOG3823|consensus	630		100.0
PF09804	280	DUF2347: Uncharacterized conserved protein (DUF234	100.0
KOG4704|consensus	431		99.95
KOG2432|consensus	565		99.93
PF07792	145	Afi1: Docking domain of Afi1 for Arf3 in vesicle t	99.7
smart00799	183	DENN Domain found in a variety of signalling prote	98.5
PF02141	185	DENN: DENN (AEX-3) domain; InterPro: IPR001194 The	98.48
PF08616	113	SPA: Stabilization of polarity axis	98.47
KOG3569|consensus	425		97.85
PF09794	379	Avl9: Transport protein Avl9; InterPro: IPR018307	97.45
PF06218	428	NPR2: Nitrogen permease regulator 2; InterPro: IPR	92.39

>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth

Probab=100.00  E-value=1.1e-59  Score=455.14  Aligned_cols=220  Identities=48%  Similarity=0.812  Sum_probs=201.8

Q ss_pred             eEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEec---CCCCCCCeEEE
Q psy4987          71 LADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLP---SLTDSKKTVFG  147 (299)
Q Consensus        71 i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp---~~~~~~~~lYG  147 (299)
                      |.|||||.||.++  |++|||+||+.....    .+.|.+|++|||+|||||+|+++||++||++|   ....+..++||
T Consensus         1 i~~i~vV~Fhh~~--G~~vE~~ypp~~~~~----~~~~~~~~~LpflAlPDg~h~~~ed~~yF~l~~~~~~~~~~~~lfG   74 (379)
T PF09794_consen    1 ILCICVVGFHHER--GPEVEYWYPPDSSDD----PLSPQEWSNLPFLALPDGAHNSEEDFSYFTLPYDASLNRDATTLFG   74 (379)
T ss_pred             CeEEEEEeccccc--CCeEEEEeCCCCCcc----ccchhhHhhCCccccCCccccCCCceEEEEeccCCCCCCCCceeec
Confidence            5689999999998  999999999743222    24578999999999999999999999999999   55567899999


Q ss_pred             EEEEEecchhhhhcCCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccc-c
Q psy4987         148 ISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIE-D  226 (299)
Q Consensus       148 iS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~~-~  226 (299)
                      +|||||++++++++|++++|||+|||||||||+.|+||.++++|+.+|++||+|+||+|.++|+++|+++|+++.... .
T Consensus        75 isc~RQi~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL~~vt~ayF~q~dF~~~~iL~~~~~~L~~~~~~~~~~  154 (379)
T PF09794_consen   75 ISCFRQIKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKLSIVTPAYFEQGDFSDTEILEDFYENLNNSFKSKNGE  154 (379)
T ss_pred             eeeHhhcCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999976531 1


Q ss_pred             CCCCCCCcccCCHHHHHHHHHHhHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchhHHhhCCCcccC
Q psy4987         227 LSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTS  297 (299)
Q Consensus       227 ~~~~~~~~~~lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~l~~g~~~~~~  297 (299)
                      ....++.|.|++++++|..||+++++||||+|||||||||+++++.+|++++||+||||+++++ ++||++
T Consensus       155 ~~~~~~~y~glslr~lv~~fr~~~LvL~K~LLLekKIlfy~s~ve~l~~~~~sLiSLiPgli~~-L~d~~~  224 (379)
T PF09794_consen  155 SLQESDLYVGLSLRELVHNFRHKTLVLFKALLLEKKILFYGSPVERLCNFQLSLISLIPGLINN-LQDSAS  224 (379)
T ss_pred             cccchhhhcCCCHHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCHHHHHHHHHHHHHHhHHHHHh-HhhccC
Confidence            2345568999999999999999999999999999999999999999999999999999999998 999975

Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].

>KOG3823|consensus

Probab=100.00  E-value=7.2e-58  Score=440.29  Aligned_cols=191  Identities=52%  Similarity=0.925  Sum_probs=176.1

Q ss_pred             CCCccccCCCccccCCCCCCCCCCeEEEEecCCCCC--CCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCCCc
Q psy4987         106 ECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDS--KKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPL  183 (299)
Q Consensus       106 ~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~~~--~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~  183 (299)
                      ++|..|++|||+|||||+|+++|||+||++|....+  .+++||+||+||+++++|+.|++++|||+||||||||+|.|+
T Consensus        38 ~~p~~W~~LPflaLPDGsHsfeedfvyFtLp~~~~PnDegtifgvSC~RQi~~~~Lk~~~~DvTRStVQKavvVi~r~Pi  117 (630)
T KOG3823|consen   38 ECPSGWKYLPFLALPDGSHSFEEDFVYFTLPSLYEPNDEGTIFGVSCYRQIRVEKLKIRTADVTRSTVQKAVVVIARLPI  117 (630)
T ss_pred             cCccccccCcceecCCCccccccceEEEecccccCCCCCccEEEEEeehhhhhhhhcccccccchhhhheeEEEEEcCCc
Confidence            468899999999999999999999999999974433  469999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccccCCCCCCCcccC-CHHHHHHHHHHhHHHHHHHhccCCc
Q psy4987         184 YGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIEDLSNAPQLFVGL-SARELILKFRHNALLLFKLLLLERK  262 (299)
Q Consensus       184 f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~~~~~~~~~~~~~l-sL~~lv~~fg~~il~LwKl~LL~kR  262 (299)
                      ||+++++|.+++.|||.|+||+++++|..+|+++|+++.+....-...++|.|+ +|++++..|+++.++|+|++||+||
T Consensus       118 fG~IkdkL~iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~l~R~~e~~~hIgL~nLr~il~~wr~naLvLlK~~lL~kr  197 (630)
T KOG3823|consen  118 FGYIKDKLAIVTNAFFDQGDFSGTELLAKAYQQLNACLQDDLSRRPERHFHIGLSNLREILLHWRHNALVLLKLMLLQKR  197 (630)
T ss_pred             cceehhhhHHhhhhhhcccCcccHHHHHHHHHHHHhhcchhhhcchhhheeehHHHHHHHHHHHHHhHHHHHHHHHhcce
Confidence            999999999999999999999999999999999999887632222345688999 5999999999999999999999999


Q ss_pred             eeeecCCCcchhhHHHHHhhcchhHHhhCCCcccC
Q psy4987         263 CVFYCSPVKPLCSTILSLLSLHPSMIETGLAKSTS  297 (299)
Q Consensus       263 ILv~s~~~~~~c~~vlsLlSLIP~~l~~g~~~~~~  297 (299)
                      |+||+++++..|+.+++|+||||.++.+ |||+++
T Consensus       198 Ivvyg~~ve~lcnlq~gl~SLIP~~Ms~-lqDs~s  231 (630)
T KOG3823|consen  198 IVVYGSPVEQLCNLQLGLASLIPSPMSD-LQDSLS  231 (630)
T ss_pred             EEEeCCcHHHHHHHHHHHHHhcCCcchh-hhcccC
Confidence            9999999999999999999999999986 999874

>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function

Probab=100.00  E-value=1.3e-39  Score=305.01  Aligned_cols=190  Identities=24%  Similarity=0.346  Sum_probs=156.1

Q ss_pred             EEEEeeccccCCCceEEEEcCC-CCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCCCCCCCeEEEEEEEE
Q psy4987          74 LYQFSFNIQCYVKFQVEYAFPP-LIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLTDSKKTVFGISCFR  152 (299)
Q Consensus        74 vFvv~FD~~~~~Gn~IEwsyP~-~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~~~~~~lYGiS~fR  152 (299)
                      ||+++||+|+  ||+|+|++|. +            .++.++||||||||+|++++|+|||+.       +.+||+||||
T Consensus         1 lFl~~FD~k~--Gn~i~W~~~~~~------------i~L~gVEfKsLPSGlH~v~~D~VyF~~-------~~~~Gls~F~   59 (280)
T PF09804_consen    1 LFLVKFDVKK--GNTIVWSRPAPD------------IDLEGVEFKSLPSGLHEVDEDVVYFVH-------DGYYGLSCFR   59 (280)
T ss_pred             CEEEEecCCC--CcEEEEeccCCC------------CccCCeeEecCCcccccccccEEEEec-------CCEEEEEEEE
Confidence            6999999998  9999999994 3            357788999999999999999999995       6899999999


Q ss_pred             ecchhhhhcCCCCccccceeEEEEEEeCCCc--h---hhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhcccccc---
Q psy4987         153 QIPVEKLKNQTADLTRNTVQKSVCVLSTVPL--Y---GHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQI---  224 (299)
Q Consensus       153 Qi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~--f---~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~---  224 (299)
                      |.+.++..+|+++|      +|||||+..|.  +   ....+.|+.+++.|.+..  .+++.||++|+..+......   
T Consensus        60 ~~~~~~~~~r~arM------~SvGVL~~~~~~~~~~~w~h~~~L~~l~~~~~~~~--~~~~~le~~~e~~~~~~~~~~~~  131 (280)
T PF09804_consen   60 QNPADEEEERGARM------YSVGVLVPPPNGFYGRLWRHAEFLEELARHLLKDP--GDYSPLEAYWEKNKADENSSSSS  131 (280)
T ss_pred             eCCCCcccccCcEE------EEEEEEecccchhhhHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHhcccccccccC
Confidence            99988778888888      99999998642  2   334788999999998765  67899999998775521100   


Q ss_pred             ------------------ccCCCCCCCcccCCHHHHHHHHHHhHHHHHHHhccCCceeeecCCC-cchhh--HHHHHhhc
Q psy4987         225 ------------------EDLSNAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPV-KPLCS--TILSLLSL  283 (299)
Q Consensus       225 ------------------~~~~~~~~~~~~lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~-~~~c~--~vlsLlSL  283 (299)
                                        .......+.|+..+|++|++.|||+||+|||++||||||||+++++ +.+|+  |++|++|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~pv~~~c~~vY~ls~Ls~  211 (280)
T PF09804_consen  132 PPDSHSRNRSLSDATALIPPDPPLSPYHPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPPPVEVACSFVYCLSLLSS  211 (280)
T ss_pred             CccccccccccccccccCCCccCCCCCCHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCCChHHHHHHHHHHHhhcc
Confidence                              0011223456778999999999999999999999999999999655 67777  67899999


Q ss_pred             chhHHhhCC
Q psy4987         284 HPSMIETGL  292 (299)
Q Consensus       284 IP~~l~~g~  292 (299)
                      ||..+....
T Consensus       212 ip~~~~~~~  220 (280)
T PF09804_consen  212 IPQSLSGSL  220 (280)
T ss_pred             CCccccccC
Confidence            999887644

>KOG4704|consensus

Probab=99.95  E-value=1.8e-27  Score=223.85  Aligned_cols=201  Identities=18%  Similarity=0.208  Sum_probs=141.8

Q ss_pred             eceEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCC------CCCC
Q psy4987          69 IGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSL------TDSK  142 (299)
Q Consensus        69 ~~i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~------~~~~  142 (299)
                      |+|+|||+++||+|+  ||.|||+||.+++            +.+|+||+||+|+|+.+.|++||+.|..      ..-+
T Consensus         1 ~~i~~i~l~~fd~k~--g~~Vew~~p~did------------legIEfks~psGihe~~~d~I~Fr~~~~l~~~~~~k~~   66 (431)
T KOG4704|consen    1 MSIQAIVLATFDAKE--GYNVEWYYPGDID------------LEGIEFKSFPSGIHELDNDTIFFRFQDQLCLSVFSKLQ   66 (431)
T ss_pred             CceeEEEeeeecccc--CceEEEecccccc------------ccceeeeccccccccccCceEEEEecchhhhhhhhccc
Confidence            579999999999998  9999999998754            5667899999999999999999999752      1124


Q ss_pred             CeEEEEEEEEecchhhhhcCCCCcccccee-EEEEEEeCC--CchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhc
Q psy4987         143 KTVFGISCFRQIPVEKLKNQTADLTRNTVQ-KSVCVLSTV--PLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNS  219 (299)
Q Consensus       143 ~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQ-KSV~VLs~~--P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~  219 (299)
                      ..-||.++|.| +..++...+.++.|+.|| +|+||+...  .....-..=.+.+-++|-..+--   +-|+++++....
T Consensus        67 ~~~~~~~~F~~-~~f~il~~d~~~~r~~vkm~s~g~~i~~~~~l~~~k~hF~e~~~h~ya~~~~~---Shl~s~~rD~~k  142 (431)
T KOG4704|consen   67 HPSFERSAFFT-SVFLILSDDINFGRAVVKMGSTGLYIANGLSLATLKYHFGEDASHTYASEKCT---SHLLSDSRDFFK  142 (431)
T ss_pred             CcccccchHhh-hhhhhccccchhhhhhheecceEEEeccchhHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHhhh
Confidence            56788888888 566777788999999999 799999842  11221222244555566544432   444444433332


Q ss_pred             ccccc----c-c----CC---------CCCCCcccCCHHHHHHHHHHhHHHHHHHhccCCceeeecCCC--cchhh---H
Q psy4987         220 CLSQI----E-D----LS---------NAPQLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPV--KPLCS---T  276 (299)
Q Consensus       220 ~~~~~----~-~----~~---------~~~~~~~~lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~--~~~c~---~  276 (299)
                      .+.-.    + +    ..         ..+..|.-..++.|++.+||.|+.|||++|||||||+++|+.  ..+|+   |
T Consensus       143 ~l~~~~~~~e~~~~~~~l~s~~~~~~~~~~~~h~~~y~~~~~~~lGp~i~~LwKfaLlrkRILi~sp~~~~~~~c~~~iy  222 (431)
T KOG4704|consen  143 SLQTSAVNLEFDSLFEKLQSNKFAILGANSKEHSQSYATILLDHLGPAIYCLWKFALLRKRILIISPHDDQLYSCIDMIY  222 (431)
T ss_pred             hhhccccccccCchhhhcccceEEecCchhhhhhHHHHHHHHHHhccHHHHHHHHHHHhheEEEEeCCCCceeehhhhHH
Confidence            22110    0 0    00         011123344788899999999999999999999999999874  36775   5


Q ss_pred             HHHHhhcchhH
Q psy4987         277 ILSLLSLHPSM  287 (299)
Q Consensus       277 vlsLlSLIP~~  287 (299)
                      |+++++..|..
T Consensus       223 c~~~i~~~s~~  233 (431)
T KOG4704|consen  223 CLSSIKRSSDA  233 (431)
T ss_pred             HHHhhhcCCcc
Confidence            67777765543

>KOG2432|consensus

Probab=99.93  E-value=5.6e-26  Score=220.10  Aligned_cols=200  Identities=21%  Similarity=0.287  Sum_probs=166.5

Q ss_pred             ceEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCe-EEEEecCCC---------
Q psy4987          70 GLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDT-VYFHLPSLT---------  139 (299)
Q Consensus        70 ~i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~-vyF~lp~~~---------  139 (299)
                      -+-|+|||+||++.  |+.+|.+||++.-++..       |..+|||+|+||++..+..|+ ++|++++.+         
T Consensus        28 WlHc~Cvv~FDLel--GQalE~iYP~~~~ls~~-------E~~nicy~aFPDSNs~~~~Dt~F~fR~R~~~~~~~~~~~d   98 (565)
T KOG2432|consen   28 WLHCFCVVTFDLEL--GQALEVIYPPDFMLSDQ-------EKINICYLAFPDSNSSCMGDTKFHFRFRRTTRRDSLPGYD   98 (565)
T ss_pred             hheeeEEEEechhh--cceeeeecCCccccccc-------hheeeeEeecCCCCccccccceEEEEEecccccccccccc
Confidence            46899999999998  99999999999877763       688999999999999999999 778886421         


Q ss_pred             -------CCCCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHH
Q psy4987         140 -------DSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKD  212 (299)
Q Consensus       140 -------~~~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~  212 (299)
                             .+..++||+.+|||.       +++...||+.||||++++.+|+++.+..+|..+++.||+.++    +.++.
T Consensus        99 kd~~~l~~d~~ylyG~VffRQ~-------~Dk~l~RGy~QKSvviis~LPf~~lf~tvl~~iap~yFe~gt----~~iea  167 (565)
T KOG2432|consen   99 KDPPALRQDGMYLYGFVFFRQT-------RDKTLKRGYFQKSVVIISFLPFFSLFYTVLFQIAPFYFELGT----NAIEA  167 (565)
T ss_pred             CCCcccCCCCceeEEEEeeeee-------chhhhhhhhhhhceEEEEecccccccchHHhhhchHHHhccc----chhhh
Confidence                   346899999999995       689999999999999999999999999999999999999887    78999


Q ss_pred             HHHHHhccccccc--------------cCC---------------------CCCCCcccCCHHHHHHHHHH---hHHHHH
Q psy4987         213 TYHHLNSCLSQIE--------------DLS---------------------NAPQLFVGLSARELILKFRH---NALLLF  254 (299)
Q Consensus       213 ~~~~ln~~~~~~~--------------~~~---------------------~~~~~~~~lsL~~lv~~fg~---~il~Lw  254 (299)
                      +...++.|+.+..              ..+                     ..+..+.+..=-+++..++.   ++-+||
T Consensus       168 a~~~i~~Wp~p~~Gk~LELPll~c~~KI~lP~a~~~p~~ar~~~~~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLW  247 (565)
T KOG2432|consen  168 ACCGIDRWPAPVPGKTLELPLLGCKKKIRLPTAHSLPFEARKTGAVELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLW  247 (565)
T ss_pred             hhccccCCCCccCCceeeecccceeeeeeccccccCcccccccceeeeccCccccccCCcchhHHHHhhHHHHHHHHHHH
Confidence            9999999986531              000                     00000111111246666664   778999


Q ss_pred             HHhccCCceeeecCCCcchhhHHHHHhhcchhHHh
Q psy4987         255 KLLLLERKCVFYCSPVKPLCSTILSLLSLHPSMIE  289 (299)
Q Consensus       255 Kl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~l~  289 (299)
                      +++|++++|+|+++.+..+++.|.+|+++|.+++.
T Consensus       248 ELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~  282 (565)
T KOG2432|consen  248 ELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIY  282 (565)
T ss_pred             HHHHhCCCeEEecCCchhhHHHHHHHHHHhhccee
Confidence            99999999999999999999999999999999875

>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast

Probab=99.70  E-value=1.1e-16  Score=137.05  Aligned_cols=108  Identities=19%  Similarity=0.323  Sum_probs=91.3

Q ss_pred             eEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCCC-----------
Q psy4987          71 LADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLT-----------  139 (299)
Q Consensus        71 i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~-----------  139 (299)
                      |..|++++||+++  |++|+++||..+.+.+        +-..|..++||||+|.+.+|++.|.|.+..           
T Consensus         2 veyIL~AEFDid~--Gp~l~hQYP~~i~g~~--------de~~LAelMLPDg~h~r~~DwTvFfL~~~~~~~~~~~~~~~   71 (145)
T PF07792_consen    2 VEYILLAEFDIDK--GPVLKHQYPSPIPGLE--------DEHMLAELMLPDGAHKRSEDWTVFFLNRDKSTEEFQLFKNK   71 (145)
T ss_pred             eeEEEEEEEecCc--CCEEEEeCCCCccCCc--------cHHHHHHhhCCcccccccCCEEEEEEccCCCCchhhhcccc
Confidence            6789999999999  9999999998765522        245688999999999999999999896421           


Q ss_pred             ------------------------CCCCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCCCchhhHHHHHHHHH
Q psy4987         140 ------------------------DSKKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTVPLYGHVQVKMALIT  195 (299)
Q Consensus       140 ------------------------~~~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~  195 (299)
                                              .....+|.++.+|+.       +|++++||.++||+.|+|+.|+|..++..|..++
T Consensus        72 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ly~ln~v~~k-------~D~~~rRGA~vKa~aI~T~~~~~~ifKPlL~laL  144 (145)
T PF07792_consen   72 KSPSNSSDNNSNNIEESSNDDENQEGPPPLYVLNLVNTK-------HDKTVRRGAVVKAMAICTRHPFFHIFKPLLLLAL  144 (145)
T ss_pred             ccccccccccccccccccccccccCCCCceEEEEeeccc-------cCcccccccceeEEEEEcccHHHHHHhHHHHHhh
Confidence                                    023789999999974       5889999999999999999999999999887765

This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.

>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN

Probab=98.50  E-value=9.7e-07  Score=78.24  Aligned_cols=110  Identities=25%  Similarity=0.320  Sum_probs=79.6

Q ss_pred             EEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccc--cc----------cC--C----CCCCCc
Q psy4987         173 KSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQ--IE----------DL--S----NAPQLF  234 (299)
Q Consensus       173 KSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~--~~----------~~--~----~~~~~~  234 (299)
                      ||+|+||+.|+|+.+++-|+.+.+.++...+    ..+|.+-..+. +.-+  ..          ..  .    ...-..
T Consensus         3 ~~icilS~~P~~~~f~~~L~~l~~~~~~~~~----~~~e~~~~~~~-~p~P~pg~~~~~~~~~~~~~~~~~~p~~~~lp~   77 (183)
T smart00799        3 KCICILSRLPFFELFRKILNELYRLLPSSSN----LPLELLISLLL-YPVPPPGGSLVLVSLGPGDLIELQRPLDSSLPL   77 (183)
T ss_pred             eEEEEEeCCcHHHHHHHHHHHHHHHHccCcc----chHHHHHHHhC-CCCCcCCCeEEEEEcCCCCcEEEECCCCCCCCC
Confidence            8999999999999999999999988875332    23333333333 3222  10          00  0    000012


Q ss_pred             ccCCHHHHHHHHHH-hHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchhH
Q psy4987         235 VGLSARELILKFRH-NALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSM  287 (299)
Q Consensus       235 ~~lsL~~lv~~fg~-~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~  287 (299)
                      .+.++..+++.++. +++.||.++||||||+|++++.+.++..+.|+.+||-++
T Consensus        78 ~~~~~~~lf~~l~~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf  131 (183)
T smart00799       78 IDFSLHELFECLGVENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPF  131 (183)
T ss_pred             CCccHHHHHHhCCHHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCc
Confidence            24577889999995 888999999999999999999999999999999987654

The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.

>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha

Probab=98.48  E-value=5.4e-07  Score=79.27  Aligned_cols=114  Identities=26%  Similarity=0.310  Sum_probs=74.1

Q ss_pred             ceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHH-Hhcccccc--c---c-------C--C---CCC
Q psy4987         170 TVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHH-LNSCLSQI--E---D-------L--S---NAP  231 (299)
Q Consensus       170 ~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~-ln~~~~~~--~---~-------~--~---~~~  231 (299)
                      ++.||+|++|+.|+|..+++-|+.+.+.+.....    ..++++..+ +....-+.  .   .       .  .   ...
T Consensus         1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~~~----~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~   76 (185)
T PF02141_consen    1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSSRI----NPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNN   76 (185)
T ss_dssp             ----EEEEEESS--HHHHHHHHHHHHHHHHTT-H----HHHHHHHHH-HHHS----TT-B--------------B---SS
T ss_pred             CCceEEEEECCCcHHHHHHHHHHHHHHHHhcCch----hHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCcc
Confidence            4679999999999999999999999999886553    455666655 33322111  0   0       0  0   001


Q ss_pred             CC-cccCCHHHHHHHHHH-hHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchhH
Q psy4987         232 QL-FVGLSARELILKFRH-NALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPSM  287 (299)
Q Consensus       232 ~~-~~~lsL~~lv~~fg~-~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~~  287 (299)
                      .. ..+.++..+++.++. +++.+|.++|+|+||+|++++.+.++..+.|+.+||-+.
T Consensus        77 ~lp~~~~~~~~lf~~l~~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~Pf  134 (185)
T PF02141_consen   77 DLPLSDFSLSPLFSCLSIDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYPF  134 (185)
T ss_dssp             S---TSHHHHHHHHHS-HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTTS
T ss_pred             CCCccccchhHHHhcCCHHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccCc
Confidence            11 123356678999995 888999999999999999999999999999999987553

DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.

>PF08616 SPA: Stabilization of polarity axis

Probab=98.47  E-value=2e-07  Score=76.88  Aligned_cols=50  Identities=28%  Similarity=0.423  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHhHHHHHHHhccCCceeeecCCCcc--hhhHHHHHhhcchh
Q psy4987         237 LSARELILKFRHNALLLFKLLLLERKCVFYCSPVKP--LCSTILSLLSLHPS  286 (299)
Q Consensus       237 lsL~~lv~~fg~~il~LwKl~LL~kRILv~s~~~~~--~c~~vlsLlSLIP~  286 (299)
                      .++.+++..|++.+..||+++|++|||+|+++++..  +|++++|+.+||++
T Consensus         2 ~~l~~~~~~f~~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p   53 (113)
T PF08616_consen    2 HSLLHLFQQFGPEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISP   53 (113)
T ss_pred             ccHHHHHHhhhhHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCc
Confidence            367889999999999999999999999999987766  99999999999998

>KOG3569|consensus

Probab=97.85  E-value=0.00024  Score=69.13  Aligned_cols=167  Identities=21%  Similarity=0.311  Sum_probs=106.2

Q ss_pred             ceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCC--CCCCCe---EEEEecCCCCCCCeEEEEEEEEecchhhhhc
Q psy4987          87 FQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSH--NYEEDT---VYFHLPSLTDSKKTVFGISCFRQIPVEKLKN  161 (299)
Q Consensus        87 n~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H--~~~eD~---vyF~lp~~~~~~~~lYGiS~fRQi~~~~l~~  161 (299)
                      +.|.|+||++-.+.        ..++.||=-|+||+.-  ..+++.   +-|.+-.  .+++.-||....+   +     
T Consensus        32 P~v~~QFP~d~~de--------e~lkaipqFCFP~~~e~~~vs~~~~q~FsFvLTd--~dg~rrFGfCRL~---~-----   93 (425)
T KOG3569|consen   32 PEVTYQFPPDFQDE--------EILKAIPQFCFPDAVEWLPVSEYGSQTFSFVLTD--EDGSRRFGFCRLP---S-----   93 (425)
T ss_pred             ccchhhCCCccccH--------HHHhhchhccCCcccccccccccccceEEEEEEc--CCCceeeeeEecC---C-----
Confidence            56899999765532        4588999999999998  555554   5566743  3457788988742   1     


Q ss_pred             CCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccc--cc-----c-C------
Q psy4987         162 QTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQ--IE-----D-L------  227 (299)
Q Consensus       162 r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~--~~-----~-~------  227 (299)
                       +       .++..||||++|.|+.+...|..+..---.    ++....+.+..++-..+-+  ..     . +      
T Consensus        94 -G-------~~~c~CilS~l~wF~vF~KlLn~v~~~~~~----~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~~~e  161 (425)
T KOG3569|consen   94 -G-------LPECYCILSRLGWFGVFSKLLNEVEDRRGI----SQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGSGTE  161 (425)
T ss_pred             -C-------CCeEEEEeeCCChHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCCceE
Confidence             1       348899999999999998888777643211    1123334444443332211  10     0 0      


Q ss_pred             -C-CCCC---CcccCCHHHHHHHHH-HhHHHHHHHhccCCceeeecCCCcchhhHHHHHhhc
Q psy4987         228 -S-NAPQ---LFVGLSARELILKFR-HNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSL  283 (299)
Q Consensus       228 -~-~~~~---~~~~lsL~~lv~~fg-~~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSL  283 (299)
                       + ...+   +--.-.+.+++...- .+++.||-.+|+||||||.++..+.++.++.|...|
T Consensus       162 ~ipd~r~LpS~~E~~~f~elf~als~~qml~ifASlL~ERRIifia~KLStLssCiHa~~AL  223 (425)
T KOG3569|consen  162 VIPDTRPLPSILEHVDFTELFVALSVRQMLQIFASLLLERRIIFIASKLSTLSSCIHAVAAL  223 (425)
T ss_pred             ECcCCCCCCCcccccCHHHHHhhcCHHHHHHHHHHHHhhceeEeeccchhHHHHHHHHHHHH
Confidence             0 0000   001124556666666 489999999999999999999888766666555444

>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth

Probab=97.45  E-value=7.3e-05  Score=73.51  Aligned_cols=23  Identities=43%  Similarity=0.765  Sum_probs=21.6

Q ss_pred             EEEEEEeeeeeccCceEEEeccc
Q psy4987           9 ILHVLVVGFHHKKGCQVFFFCNF   31 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~   31 (299)
                      |++||||||||++||+||||+.-
T Consensus         1 i~~i~vV~Fhh~~G~~vE~~ypp   23 (379)
T PF09794_consen    1 ILCICVVGFHHERGPEVEYWYPP   23 (379)
T ss_pred             CeEEEEEecccccCCeEEEEeCC
Confidence            68999999999999999999984

Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].

>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease

Probab=92.39  E-value=2.1  Score=43.11  Aligned_cols=123  Identities=15%  Similarity=0.205  Sum_probs=74.5

Q ss_pred             eeceEEEEEEeeccccCCCceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCeEEEEecCCC--CC----
Q psy4987          68 LIGLADLYQFSFNIQCYVKFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYEEDTVYFHLPSLT--DS----  141 (299)
Q Consensus        68 ~~~i~~vFvv~FD~~~~~Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~eD~vyF~lp~~~--~~----  141 (299)
                      ..||.|||.++||...  |+.|.|++|+..-....      ..|                +++.-|.+|+..  +.    
T Consensus         2 f~pI~~IFya~F~p~~--GpkI~~Q~P~~~i~~~~------~~F----------------d~is~yIIPk~~lc~rlitv   57 (428)
T PF06218_consen    2 FVPIHAIFYAEFHPTE--GPKIVHQVPEGSIKPSL------FNF----------------DSISNYIIPKPELCNRLITV   57 (428)
T ss_pred             CCceEEEEEeecCCCC--CCEEEEECCcccccccc------cch----------------hhcccEEecChHHhCceeEE
Confidence            4689999999999998  99999999975320000      122                233445566421  00    


Q ss_pred             CCeEEEEEEEEecchhhhhcCCCCccccceeEEEEEEeCC----CchhhHHHHHHHHHHH------HhhcCC--------
Q psy4987         142 KKTVFGISCFRQIPVEKLKNQTADLTRNTVQKSVCVLSTV----PLYGHVQVKMALITHA------YFEEGD--------  203 (299)
Q Consensus       142 ~~~lYGiS~fRQi~~~~l~~r~~~v~Rs~VQKSV~VLs~~----P~f~~l~~~L~~~~~a------yF~q~d--------  203 (299)
                      ...-|.|..|=-.      =.++...|+...--+|.+.+.    .-|..+-.||....++      |..+.+        
T Consensus        58 ~~~~~kIlg~PV~------I~~~kY~RN~f~FN~cfV~~~~~~~~~YepvV~KLa~~l~~LE~q~~fLS~~~~~~~~~~~  131 (428)
T PF06218_consen   58 NAGGYKILGYPVC------IEDPKYERNEFIFNFCFVFDYDSDTSPYEPVVRKLARYLRELEEQSGFLSKEEKDPNFFKS  131 (428)
T ss_pred             eeCCeEEEEeeeE------ecCCeeccceEEEEEEEEEcCCCCccchHHHHHHHHHHHHHHHHHhhhhcCcccccccccc
Confidence            0122445444321      136779999999999999863    2355555556555532      222222        


Q ss_pred             ---------CCchhhHHHHHHHHhcc
Q psy4987         204 ---------FSKVSLLKDTYHHLNSC  220 (299)
Q Consensus       204 ---------~~~~~iLe~~~~~ln~~  220 (299)
                               ..-.++|++.++.+|+.
T Consensus       132 ~~~~~~~~~~~i~~Lle~i~~DLN~y  157 (428)
T PF06218_consen  132 KEIGSKISKSSIPSLLEQIFEDLNNY  157 (428)
T ss_pred             ccccccccHhHHHHHHHHHHHhhccc
Confidence                     12246788889988863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 6e-07
 Identities = 61/411 (14%), Positives = 118/411 (28%), Gaps = 168/411 (40%)

Query: 5   EENIILH--------VLVV------GFHHKKGCQVFFFCNFHNSGGESVKGTLPGILAL- 49
            +N+++          + +          K   ++F+  N  N    S +  L  +  L 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNC--NSPETVLEMLQKLL 206

Query: 50  -------------PYSPPLPPENCK---------RGHREVLIGLADLYQF----SFNIQC 83
                          +  L   + +         + +   L+ L ++       +FN+ C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 84  -------------------YVKFQVEYAFPPLIEGTSSESNECPSEW-----KYLPTLA- 118
                                   +++    L   T  E      ++     + LP    
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 119 -------------LPDGSHNYEEDTVYFHLPSLTDSKKTVFGIS-----------CFRQ- 153
                        + DG   ++    + H+    D   T+   S            F + 
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDN---WKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 154 --------IPVEKLKNQTADLTRNTVQKSVCVL------------STVPLYG-HVQVKM- 191
                   IP   L     D+ ++ V   V  L            ST+ +   ++++K+ 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 192 ---------ALITHAY-----FEEGDFSKVSLLKDTY------HHLNSCLSQIEDLSNAP 231
                    +++ H Y     F+  D     L  D Y      HHL +     E ++   
Sbjct: 439 LENEYALHRSIVDH-YNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNI-EHPERMT--- 491

Query: 232 QLFVGLSARELILKFRHNALLLFKLLLLERKCVFYCSPVKPLCSTILSLLS 282
            LF     R + L FR      F    LE+K + + S       +IL+ L 
Sbjct: 492 -LF-----RMVFLDFR------F----LEQK-IRHDSTAWNASGSILNTLQ 525

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3tw8_A	391	DENN domain-containing protein 1B; longin domain,	99.14

>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.14  E-value=9.2e-11  Score=113.78  Aligned_cols=171  Identities=18%  Similarity=0.198  Sum_probs=125.1

Q ss_pred             CceEEEEcCCCCCCCCCCCCCCCccccCCCccccCCCCCCCC----CCeEEEEecCCCCCCCeEEEEEEEEecchhhhhc
Q psy4987          86 KFQVEYAFPPLIEGTSSESNECPSEWKYLPTLALPDGSHNYE----EDTVYFHLPSLTDSKKTVFGISCFRQIPVEKLKN  161 (299)
Q Consensus        86 Gn~IEwsyP~~~~~~~~~~~~~~~~~~~LpfkALPDG~H~~~----eD~vyF~lp~~~~~~~~lYGiS~fRQi~~~~l~~  161 (299)
                      ++.|.++||++.++        +...+.||-.|+|+|.....    ..+..|++-.  .+++..||.+- + ..      
T Consensus        29 ~p~i~~~fP~~~~d--------~~~l~~ip~FCfP~~~~~~~~~~~~~~fsFVLTd--~dG~r~yg~Cr-~-~~------   90 (391)
T 3tw8_A           29 DPVVLWKFPEDFGD--------QEILQSVPKFCFPFDVERVSQNQVGQHFTFVLTD--IESKQRFGFCR-L-TS------   90 (391)
T ss_dssp             CCEEEEEESTTCCC--------HHHHHHHHHHHSCSCHHHHGGGCCSEEEEEEEEC--TTSCEEEEEEE-E-CT------
T ss_pred             CCeeeEeCCCCccc--------chhhhccccccCCCccccCccCCCCceEEEEEec--CCCCEEEEEEE-c-cC------
Confidence            67899999985432        23567899999999988443    3346677743  34578899664 2 11      


Q ss_pred             CCCCccccceeEEEEEEeCCCchhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccc---cCCC-------C-
Q psy4987         162 QTADLTRNTVQKSVCVLSTVPLYGHVQVKMALITHAYFEEGDFSKVSLLKDTYHHLNSCLSQIE---DLSN-------A-  230 (299)
Q Consensus       162 r~~~v~Rs~VQKSV~VLs~~P~f~~l~~~L~~~~~ayF~q~d~~~~~iLe~~~~~ln~~~~~~~---~~~~-------~-  230 (299)
                       +       -+|++|+||+.|+|+.++.-|..+.+.+++...    ..+|.+.+.+.+++-+..   ....       . 
T Consensus        91 -~-------~~k~icilS~lp~f~~F~k~L~~l~~~~~~~~~----~~le~~~~~l~~~P~P~pG~~v~l~~~~~~~~P~  158 (391)
T 3tw8_A           91 -G-------GTICLCILSYLPWFEVYYKLLNTLADYLAKELE----NDLNETLRSLYNHPVPKANTPVNLSVHSYFIAPD  158 (391)
T ss_dssp             -T-------SSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHSCCCCSCC--------------
T ss_pred             -C-------CceEEEEEeCChHHHHHHHHHHHHHHHHhcCCc----hHHHHHHHHHhhCCCCCCCCeEEEeccceeeCCC
Confidence             1       259999999999999999999999998886442    567888888888764421   0000       0 


Q ss_pred             -CCC-cc--cCCHHHHHHHHHH-hHHHHHHHhccCCceeeecCCCcchhhHHHHHhhcchh
Q psy4987         231 -PQL-FV--GLSARELILKFRH-NALLLFKLLLLERKCVFYCSPVKPLCSTILSLLSLHPS  286 (299)
Q Consensus       231 -~~~-~~--~lsL~~lv~~fg~-~il~LwKl~LL~kRILv~s~~~~~~c~~vlsLlSLIP~  286 (299)
                       ..+ ..  ..++..+++.++. +++.||.++|||+||+|+++..+.++..+.|+.+||-+
T Consensus       159 ~~~Lp~~~~~~~~~~Lf~~L~~~~il~l~~~~LlE~rIl~~S~~~~~Ls~~~~al~~Ll~P  219 (391)
T 3tw8_A          159 VTGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYP  219 (391)
T ss_dssp             --CCCCBTTSHHHHHHHHHSCHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTTT
T ss_pred             CCCCCCCCCCCCHHHHHHhCCHHHHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcC
Confidence             000 00  1146678999985 89999999999999999999999999999999998755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00