Psyllid ID: psy5005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MDGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSLPVSV
Secondary Structure (PSIPRED)
ccEEEEEHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccccHHcEEEEEcEEEccEEcccccHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEHHHHHHHHHHHHccccccccEEEEccccHHHccEEEEEEccccccccccEEEEEEEEccEEccHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccEEEEEEEc
Coil and Loop (DISEMBL)
mdglrvnlDMGKAFYswsmqrdpdmkdtvvrsttipeeLGRISYLLsdktgtltqnSMVFRKLHLgtvsygpdtfDEVRDLLKFTYEnmsatadsntphkqmvigsnkirrsdhkpgtvslpvsv
Flexible Loop (DISEMBL)
MDGLRVNLDMGKAFyswsmqrdpdmkDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENMsatadsntphkqmvigsnkirrsdhkpgtvslpvsv
Low Complexity Region (SEG)
MDGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSLPVSV
Disordered region (IsUnstruct)
*********MGKAFYSWS**********VVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYE**************************************
Disordered Region (DISOPRED)
*DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDE*******************************************LPV**
Disordered Region (DISEMBL)
MDGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSLPVSV
Disordered Region (DISPRO)
*DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYE*******************NKIRRSDHKPGTVSLPVSV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSLPVSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
O43861	1147	Probable phospholipid-tra	yes	N/A	0.872	0.095	0.548	2e-30
A1A4J6	1136	Probable phospholipid-tra	yes	N/A	0.872	0.095	0.557	4e-29
F1Q4S1	1125	Probable phospholipid-tra	yes	N/A	0.872	0.096	0.526	4e-29
O70228	1047	Probable phospholipid-tra	yes	N/A	0.84	0.100	0.559	1e-28
O75110	1047	Probable phospholipid-tra	no	N/A	0.84	0.100	0.550	2e-28
P98195	1146	Probable phospholipid-tra	no	N/A	0.92	0.100	0.512	4e-28
D4ABB8	1147	Probable phospholipid-tra	no	N/A	0.92	0.100	0.512	3e-27
P40527	1151	Probable phospholipid-tra	yes	N/A	0.648	0.070	0.567	2e-21
Q10309	1033	Putative phospholipid-tra	yes	N/A	0.816	0.098	0.441	4e-19
P98205	1107	Phospholipid-transporting	yes	N/A	0.616	0.069	0.373	9e-11

>sp|O43861|ATP9B_HUMAN Probable phospholipid-transporting ATPase IIB OS=Homo sapiens GN=ATP9B PE=2 SV=4

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 83/113 (73%), Gaps = 4/113 (3%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKA Y W M +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN M+F++L
Sbjct: 424 LRVNLDMGKAVYGWMMMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMIFKRL 483

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSN----TPHKQMVIGSNKIRRS 112
           HLGTVSYG DT DE++  ++ +Y  M + A  N    TP ++    + K+R+S
Sbjct: 484 HLGTVSYGADTMDEIQSHVRDSYSQMQSQAGGNNTGSTPLRKAQSSAPKVRKS 536

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 1

>sp|A1A4J6|ATP9B_BOVIN Probable phospholipid-transporting ATPase IIB OS=Bos taurus GN=ATP9B PE=2 SV=1

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 80/113 (70%), Gaps = 4/113 (3%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKA Y W + RD  +  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct: 425 LRVNLDMGKAAYGWMIMRDEHIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 484

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATAD----SNTPHKQMVIGSNKIRRS 112
           HLGTVSYG DT DE+++ L   Y      A     ++TP ++    + K+RRS
Sbjct: 485 HLGTVSYGTDTMDEIQNHLVNAYTQTQCQAGGSSAASTPPRKAPSSAPKVRRS 537

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|F1Q4S1|ATP9B_DANRE Probable phospholipid-transporting ATPase IIB OS=Danio rerio GN=atp9b PE=2 SV=1

 Score =  126 bits (316), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 85/114 (74%), Gaps = 5/114 (4%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGK+ Y W + +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct: 411 LRVNLDMGKSAYGWMIMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 470

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSA-----TADSNTPHKQMVIGSNKIRRS 112
           HLGTVSYG DT DE++  +  +Y  +S+     ++ S+TP ++    + K+R+S
Sbjct: 471 HLGTVSYGTDTMDEIQSHIIQSYAQVSSAQSNGSSASSTPSRKPQPPAPKVRKS 524

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|O70228|ATP9A_MOUSE Probable phospholipid-transporting ATPase IIA OS=Mus musculus GN=Atp9a PE=2 SV=3

 Score =  124 bits (312), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/109 (55%), Positives = 79/109 (72%), Gaps = 4/109 (3%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGK  YSW ++RD  +  TVVRS+TIPE+LGRISYLL+DKTGTLTQN MVF++L
Sbjct: 347 LRVNLDMGKIVYSWVIRRDSKIPGTVVRSSTIPEQLGRISYLLTDKTGTLTQNEMVFKRL 406

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRS 112
           HLGTV+YG D+ DEV+  +   Y   S     + P ++    + K+RR+
Sbjct: 407 HLGTVAYGLDSMDEVQSHIFSIYTQQS----QDPPAQKGPTVTTKVRRT 451

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|O75110|ATP9A_HUMAN Probable phospholipid-transporting ATPase IIA OS=Homo sapiens GN=ATP9A PE=1 SV=3

 Score =  124 bits (311), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 4/109 (3%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGK  YSW ++RD  +  TVVRS+TIPE+LGRISYLL+DKTGTLTQN M+F++L
Sbjct: 347 LRVNLDMGKIVYSWVIRRDSKIPGTVVRSSTIPEQLGRISYLLTDKTGTLTQNEMIFKRL 406

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRS 112
           HLGTV+YG D+ DEV+  +   Y   S     + P ++    + K+RR+
Sbjct: 407 HLGTVAYGLDSMDEVQSHIFSIYTQQS----QDPPAQKGPTLTTKVRRT 451

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P98195|ATP9B_MOUSE Probable phospholipid-transporting ATPase IIB OS=Mus musculus GN=Atp9b PE=2 SV=4

 Score =  123 bits (308), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/121 (51%), Positives = 80/121 (66%), Gaps = 6/121 (4%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKA Y W + +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct: 423 LRVNLDMGKAAYGWMIMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 482

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSLPV 123
           HLGTVSYG DT DE++  +  +Y  + +    + P       S  +RRS      V   V
Sbjct: 483 HLGTVSYGTDTMDEIQSHVLNSYLQVHSQPSGHNP------SSAPLRRSQSSTPKVKKSV 536

Query: 124 S 124
           S
Sbjct: 537 S 537

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|D4ABB8|ATP9B_RAT Probable phospholipid-transporting ATPase IIB OS=Rattus norvegicus GN=Atp9b PE=2 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 80/121 (66%), Gaps = 6/121 (4%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKA Y W + +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct: 424 LRVNLDMGKAAYGWMIMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 483

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSLPV 123
           HLGTVSYG DT DE++  +  +Y  + +    + P       S  +RRS      V   V
Sbjct: 484 HLGTVSYGTDTMDEIQSHVLNSYLQVHSQTSGHNP------SSAPLRRSQSSTPKVKKSV 537

Query: 124 S 124
           S
Sbjct: 538 S 538

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P40527|ATC7_YEAST Probable phospholipid-transporting ATPase NEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NEO1 PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 62/81 (76%)

Query: 3   GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
            LRVNLD+ K+ Y+  ++ D  + +T+VR++TIPE+LGRI YLLSDKTGTLTQN M  +K
Sbjct: 458 SLRVNLDLAKSVYAHQIEHDKTIPETIVRTSTIPEDLGRIEYLLSDKTGTLTQNDMQLKK 517

Query: 63  LHLGTVSYGPDTFDEVRDLLK 83
           +HLGTVSY  +T D V D ++
Sbjct: 518 IHLGTVSYTSETLDIVSDYVQ 538

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids (Potential). Leads to neomycin-resistance when overexpressed. Required for traffic between late Golgi and early endosomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q10309|YD56_SCHPO Putative phospholipid-transporting ATPase C6C3.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6C3.06c PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 68/102 (66%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLD+ K  +S + + DP++   VVRS+ IPEELGRI Y+L+DKTGTLTQN M  +KL
Sbjct: 364 LRVNLDLAKIVHSKNTESDPNLPGVVVRSSNIPEELGRIEYVLTDKTGTLTQNEMEMKKL 423

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIG 105
           H+GT+ +  ++ D V+  ++     +  + DS T  + +V+ 
Sbjct: 424 HVGTMGFSAESMDVVQACIQNYSTPIPLSEDSKTLVRNLVLA 465

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P98205|ALA2_ARATH Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 6/83 (7%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKD------TVVRSTTIPEELGRISYLLSDKTGTLTQNS 57
           ++V+LD+ K  Y+  ++ D +M D      +   +T I E+LG++ Y+L+DKTGTLT N 
Sbjct: 331 IKVSLDLVKGLYAKFIEWDVEMIDQETGTASYAANTAISEDLGQVEYILTDKTGTLTDNK 390

Query: 58  MVFRKLHLGTVSYGPDTFDEVRD 80
           M+FR+  +G + YG +  D ++D
Sbjct: 391 MIFRRCCIGGIFYGNENGDALKD 413

Involved in transport of phospholipids. Contributes to transmembrane flipping of lipids. Requires an interaction with a protein of the ALIS family for activity. Specific for phosphatidylserine and has no activity with lysolipid, phosphatidylcholine or phosphatidylethanolamine.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
328715901	1067	PREDICTED: probable phospholipid-transpo	0.856	0.100	0.672	2e-34
332030948	1108	Putative phospholipid-transporting ATPas	0.856	0.096	0.657	9e-34
307175941	1311	Probable phospholipid-transporting ATPas	0.856	0.081	0.660	3e-33
345488313	1278	PREDICTED: probable phospholipid-transpo	0.848	0.082	0.649	1e-32
350409153	1988	PREDICTED: probable phospholipid-transpo	0.856	0.053	0.642	1e-32
380011956	1246	PREDICTED: probable phospholipid-transpo	0.848	0.085	0.627	2e-32
328787830	1275	PREDICTED: probable phospholipid-transpo	0.848	0.083	0.627	2e-32
383861464	1285	PREDICTED: probable phospholipid-transpo	0.832	0.080	0.639	3e-32
307201164	1105	Probable phospholipid-transporting ATPas	0.864	0.097	0.639	3e-32
321474198	1065	hypothetical protein DAPPUDRAFT_314296 [	0.816	0.095	0.651	2e-31

>gi|328715901|ref|XP_001944617.2| PREDICTED: probable phospholipid-transporting ATPase IIB-like [Acyrthosiphon pisum]

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/113 (67%), Positives = 88/113 (77%), Gaps = 6/113 (5%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKAFYSWSMQRD +M DTVVR TTIPEELGRISYL SDKTGTLTQNSMVF++L
Sbjct: 352 LRVNLDMGKAFYSWSMQRDEEMPDTVVRCTTIPEELGRISYLFSDKTGTLTQNSMVFKRL 411

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSN--KIRRSDH 114
           HLGTVSYG ++FD+V + LK T+      A   T ++ +  GS   KIRRS+ 
Sbjct: 412 HLGTVSYGAESFDQVAEQLKMTF----CGAVEPTHNRNLSQGSTSFKIRRSEQ 460

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030948|gb|EGI70574.1| Putative phospholipid-transporting ATPase IIB [Acromyrmex echinatior]

 Score =  147 bits (370), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 86/111 (77%), Gaps = 4/111 (3%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKAFY+W +QRD D+  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+KL
Sbjct: 383 LRVNLDMGKAFYAWCIQRDKDIAGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKKL 442

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDH 114
           HLGT+SYG +TFDEV  +LK  Y     T   ++P K     S K+RRS++
Sbjct: 443 HLGTISYGQETFDEVTSVLKTYY----PTDTEHSPVKPTSAHSGKVRRSEN 489

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175941|gb|EFN65751.1| Probable phospholipid-transporting ATPase IIB [Camponotus floridanus]

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 90/112 (80%), Gaps = 5/112 (4%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKAFY+W +QRD D+  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+KL
Sbjct: 589 LRVNLDMGKAFYAWCIQRDKDIAGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKKL 648

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHK-QMVIGSNKIRRSDH 114
           HLGT+SY  +TFDEV  +LK TY  ++A    N+P K  + + S K+RRS++
Sbjct: 649 HLGTISYSQETFDEVTSVLK-TYYPINA---ENSPVKPALSLHSGKVRRSEN 696

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488313|ref|XP_001605560.2| PREDICTED: probable phospholipid-transporting ATPase IIB-like [Nasonia vitripennis]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 89/114 (78%), Gaps = 8/114 (7%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGK FY+W +QRD D+  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+KL
Sbjct: 554 LRVNLDMGKTFYAWCIQRDKDIAGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKKL 613

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADS-NTPHKQMVIG--SNKIRRSDH 114
           HLGT+SYG D+FD+V  +L   Y     T DS ++P K +V G  S K+RRS++
Sbjct: 614 HLGTISYGQDSFDDVSSVLSTFY-----TVDSESSPVKVVVTGTHSGKVRRSEN 662

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409153|ref|XP_003488629.1| PREDICTED: probable phospholipid-transporting ATPase IIB-like [Bombus impatiens]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 85/112 (75%), Gaps = 5/112 (4%)

Query: 3    GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
             LRVNLDMGKAFY+W +QRD ++  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+K
Sbjct: 1265 SLRVNLDMGKAFYAWCIQRDKEIAGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKK 1324

Query: 63   LHLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHK-QMVIGSNKIRRSD 113
            LHLG +SYG +TFDE+  +LK  Y   S T    +P K    I S K+RRS+
Sbjct: 1325 LHLGMISYGQETFDEIMTVLKTCYSTNSET----SPVKPSASIHSGKVRRSE 1372

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011956|ref|XP_003690057.1| PREDICTED: probable phospholipid-transporting ATPase IIB-like [Apis florea]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 85/110 (77%), Gaps = 4/110 (3%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKAFY+W +QRD ++  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+KL
Sbjct: 525 LRVNLDMGKAFYAWCIQRDKEIAGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKKL 584

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSD 113
           HLG +SYG +TFDEV  +L+  Y N    ++++       I S K+RRS+
Sbjct: 585 HLGMISYGQETFDEVMTVLQTCYAN----SETSPVKPSTSIHSGKVRRSE 630

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787830|ref|XP_396589.3| PREDICTED: probable phospholipid-transporting ATPase IIB-like [Apis mellifera]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 85/110 (77%), Gaps = 4/110 (3%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKAFY+W +QRD ++  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+KL
Sbjct: 554 LRVNLDMGKAFYAWCIQRDKEIAGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKKL 613

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSD 113
           HLG +SYG +TFDEV  +L+  Y N    ++++       I S K+RRS+
Sbjct: 614 HLGMISYGQETFDEVMTVLQTCYAN----SETSPVKPSTSIHSGKVRRSE 659

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861464|ref|XP_003706206.1| PREDICTED: probable phospholipid-transporting ATPase IIB-like [Megachile rotundata]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 86/111 (77%), Gaps = 7/111 (6%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKAFY+W +QRD ++  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+KL
Sbjct: 565 LRVNLDMGKAFYAWCIQRDKEIVGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKKL 624

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSN-TPHKQMVIGSNKIRRSD 113
           HLG +SYG +TFDEV ++LK  Y + S T+    + H      S K+RRS+
Sbjct: 625 HLGMISYGQETFDEVMNVLKTYYSSTSETSPVKPSAH------SGKVRRSE 669

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201164|gb|EFN81070.1| Probable phospholipid-transporting ATPase IIB [Harpegnathos saltator]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 85/111 (76%), Gaps = 3/111 (2%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGK FY+W +QRD D+  TVVR+TTIPEELGRISYLLSDKTGTLTQN MVF+KL
Sbjct: 383 LRVNLDMGKVFYAWCIQRDKDIVGTVVRTTTIPEELGRISYLLSDKTGTLTQNKMVFKKL 442

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDH 114
           HLGT+SYG +TFDEV  +LK  Y   S  +D++         S K+RRS++
Sbjct: 443 HLGTISYGQETFDEVTTVLKSYY---SINSDNSLVKPAPSAHSGKVRRSEN 490

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321474198|gb|EFX85164.1| hypothetical protein DAPPUDRAFT_314296 [Daphnia pulex]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 84/109 (77%), Gaps = 7/109 (6%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           LRVNLDMGKAFYSWS+ +D ++  TVVRSTTIPEELGRISYLLSDKTGTLT+N MVFRKL
Sbjct: 377 LRVNLDMGKAFYSWSIMKDKEIPGTVVRSTTIPEELGRISYLLSDKTGTLTENEMVFRKL 436

Query: 64  HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRS 112
           HLGT +YG +TFDE+R LL   + + S    S TP +     S K+RR+
Sbjct: 437 HLGTAAYGTETFDEIRTLLGQAFSSYS----SATPGQP---SSGKMRRT 478

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
UNIPROTKB|O43861	1147	ATP9B "Probable phospholipid-t	0.872	0.095	0.548	1.5e-27
UNIPROTKB|A1A4J6	1136	ATP9B "Probable phospholipid-t	0.872	0.095	0.557	2.9e-26
UNIPROTKB|E1BRJ3	1141	ATP9B "Uncharacterized protein	0.872	0.095	0.530	2.9e-26
FB|FBgn0051729	1256	CG31729 [Drosophila melanogast	0.872	0.086	0.542	4.3e-26
UNIPROTKB|J9PBH4	1107	ATP9B "Uncharacterized protein	0.864	0.097	0.547	1.2e-25
UNIPROTKB|J9NWJ4	1136	ATP9B "Uncharacterized protein	0.864	0.095	0.547	1.3e-25
UNIPROTKB|F1PJM9	1147	ATP9B "Uncharacterized protein	0.864	0.094	0.547	1.3e-25
ZFIN|ZDB-GENE-060503-583	1147	atp9b "ATPase, class II, type	0.872	0.095	0.526	1.6e-25
RGD|1563006	1147	Atp9b "ATPase, class II, type	0.92	0.100	0.512	7.1e-25
MGI|MGI:1330826	1047	Atp9a "ATPase, class II, type	0.84	0.100	0.559	7.9e-25

UNIPROTKB|O43861 ATP9B "Probable phospholipid-transporting ATPase IIB" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 62/113 (54%), Positives = 83/113 (73%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKA Y W M +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN M+F++L
Sbjct:   424 LRVNLDMGKAVYGWMMMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMIFKRL 483

Query:    64 HLGTVSYGPDTFDEVRDLLKFTYENMSATADSN----TPHKQMVIGSNKIRRS 112
             HLGTVSYG DT DE++  ++ +Y  M + A  N    TP ++    + K+R+S
Sbjct:   484 HLGTVSYGADTMDEIQSHVRDSYSQMQSQAGGNNTGSTPLRKAQSSAPKVRKS 536

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=NAS

GO:0005524 "ATP binding" evidence=NAS

GO:0015247 "aminophospholipid transporter activity" evidence=NAS

GO:0015917 "aminophospholipid transport" evidence=NAS

GO:0019829 "cation-transporting ATPase activity" evidence=NAS

GO:0045332 "phospholipid translocation" evidence=NAS

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0072600 "establishment of protein localization to Golgi" evidence=IMP

UNIPROTKB|A1A4J6 ATP9B "Probable phospholipid-transporting ATPase IIB" [Bos taurus (taxid:9913)]

 Score = 309 (113.8 bits), Expect = 2.9e-26, P = 2.9e-26
 Identities = 63/113 (55%), Positives = 80/113 (70%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKA Y W + RD  +  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct:   425 LRVNLDMGKAAYGWMIMRDEHIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 484

Query:    64 HLGTVSYGPDTFDEVRDLLKFTYENMSATAD----SNTPHKQMVIGSNKIRRS 112
             HLGTVSYG DT DE+++ L   Y      A     ++TP ++    + K+RRS
Sbjct:   485 HLGTVSYGTDTMDEIQNHLVNAYTQTQCQAGGSSAASTPPRKAPSSAPKVRRS 537

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0072600 "establishment of protein localization to Golgi" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|E1BRJ3 ATP9B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 309 (113.8 bits), Expect = 2.9e-26, P = 2.9e-26
 Identities = 60/113 (53%), Positives = 83/113 (73%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKA Y W + +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN M+F++L
Sbjct:   416 LRVNLDMGKAAYGWMIMKDDNIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMIFKRL 475

Query:    64 HLGTVSYGPDTFDEVRDLLKFTYENM----SATADSNTPHKQMVIGSNKIRRS 112
             HLGTVSYG DT DE++  +  +Y  +    S  + S+TP ++    + K+R+S
Sbjct:   476 HLGTVSYGTDTMDEIQSHIINSYSQVHSQNSGNSTSSTPSRKPQSSAPKVRKS 528

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0072600 "establishment of protein localization to Golgi" evidence=IEA

FB|FBgn0051729 CG31729 [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 4.3e-26, P = 4.3e-26
 Identities = 64/118 (54%), Positives = 84/118 (71%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKAFYSW MQ D +++ TVVRSTTIPEELGRISY+L+DKTGTLTQN MVF+K+
Sbjct:   523 LRVNLDMGKAFYSWQMQNDSNIQGTVVRSTTIPEELGRISYVLTDKTGTLTQNEMVFKKI 582

Query:    64 HLGTVSYGPDTFDEVRDLLKFTYEN--------MSATADSNTPHKQMVIGSNKIRRSD 113
             HLG VS+  DTF  +  +++    N        +S+++      K M+ G N++RR +
Sbjct:   583 HLGIVSHDADTFHHIGQMIQKLSGNILQQQQGSLSSSSSGGDSTKPMMFG-NRMRRPE 639

GO:0006812 "cation transport" evidence=ISS

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB|J9PBH4 ATP9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 63/115 (54%), Positives = 81/115 (70%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKA Y W + +D  +  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct:   394 LRVNLDMGKAAYGWMIMKDESIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 453

Query:    64 HLGTVSYGPDTFDEVRDLLKFTY-ENMSATADSNT-----PHKQMVIGSNKIRRS 112
             HLGTVSYG DT DE+++ L+  Y + M + A  N      P K     + K+R+S
Sbjct:   454 HLGTVSYGADTMDEIQNHLRNPYSQQMQSQASGNNTSSTLPRKAQS-SAPKVRKS 507

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|J9NWJ4 ATP9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 63/115 (54%), Positives = 81/115 (70%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKA Y W + +D  +  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct:   423 LRVNLDMGKAAYGWMIMKDESIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 482

Query:    64 HLGTVSYGPDTFDEVRDLLKFTY-ENMSATADSNT-----PHKQMVIGSNKIRRS 112
             HLGTVSYG DT DE+++ L+  Y + M + A  N      P K     + K+R+S
Sbjct:   483 HLGTVSYGADTMDEIQNHLRNPYSQQMQSQASGNNTSSTLPRKAQS-SAPKVRKS 536

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB|F1PJM9 ATP9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 63/115 (54%), Positives = 81/115 (70%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKA Y W + +D  +  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct:   423 LRVNLDMGKAAYGWMIMKDESIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 482

Query:    64 HLGTVSYGPDTFDEVRDLLKFTY-ENMSATADSNT-----PHKQMVIGSNKIRRS 112
             HLGTVSYG DT DE+++ L+  Y + M + A  N      P K     + K+R+S
Sbjct:   483 HLGTVSYGADTMDEIQNHLRNPYSQQMQSQASGNNTSSTLPRKAQS-SAPKVRKS 536

GO:0072600 "establishment of protein localization to Golgi" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

ZFIN|ZDB-GENE-060503-583 atp9b "ATPase, class II, type 9B" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 60/114 (52%), Positives = 85/114 (74%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGK+ Y W + +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct:   433 LRVNLDMGKSAYGWMIMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 492

Query:    64 HLGTVSYGPDTFDEVRDLLKFTYENMSA-----TADSNTPHKQMVIGSNKIRRS 112
             HLGTVSYG DT DE++  +  +Y  +S+     ++ S+TP ++    + K+R+S
Sbjct:   493 HLGTVSYGTDTMDEIQSHIIQSYAQVSSAQSNGSSASSTPSRKPQPPAPKVRKS 546

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1563006 Atp9b "ATPase, class II, type 9B" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 7.1e-25, P = 7.1e-25
 Identities = 62/121 (51%), Positives = 80/121 (66%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGKA Y W + +D ++  TVVR++TIPEELGR+ YLL+DKTGTLTQN MVF++L
Sbjct:   424 LRVNLDMGKAAYGWMIMKDENIPGTVVRTSTIPEELGRLVYLLTDKTGTLTQNEMVFKRL 483

Query:    64 HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGTVSLPV 123
             HLGTVSYG DT DE++  +  +Y  + +    + P       S  +RRS      V   V
Sbjct:   484 HLGTVSYGTDTMDEIQSHVLNSYLQVHSQTSGHNP------SSAPLRRSQSSTPKVKKSV 537

Query:   124 S 124
             S
Sbjct:   538 S 538

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0072600 "establishment of protein localization to Golgi" evidence=IEA;ISO

MGI|MGI:1330826 Atp9a "ATPase, class II, type 9A" [Mus musculus (taxid:10090)]

 Score = 295 (108.9 bits), Expect = 7.9e-25, P = 7.9e-25
 Identities = 61/109 (55%), Positives = 79/109 (72%)

Query:     4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
             LRVNLDMGK  YSW ++RD  +  TVVRS+TIPE+LGRISYLL+DKTGTLTQN MVF++L
Sbjct:   347 LRVNLDMGKIVYSWVIRRDSKIPGTVVRSSTIPEQLGRISYLLTDKTGTLTQNEMVFKRL 406

Query:    64 HLGTVSYGPDTFDEVRDLLKFTYENMSATADSNTPHKQMVIGSNKIRRS 112
             HLGTV+YG D+ DEV+  +   Y   S     + P ++    + K+RR+
Sbjct:   407 HLGTVAYGLDSMDEVQSHIFSIYTQQS----QDPPAQKGPTVTTKVRRT 451

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006812 "cation transport" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O70228	ATP9A_MOUSE	3, ., 6, ., 3, ., 1	0.5596	0.84	0.1002	yes	N/A
O43861	ATP9B_HUMAN	3, ., 6, ., 3, ., 1	0.5486	0.872	0.0950	yes	N/A
P40527	ATC7_YEAST	3, ., 6, ., 3, ., 1	0.5679	0.648	0.0703	yes	N/A
F1Q4S1	ATP9B_DANRE	3, ., 6, ., 3, ., 1	0.5263	0.872	0.0968	yes	N/A
A1A4J6	ATP9B_BOVIN	3, ., 6, ., 3, ., 1	0.5575	0.872	0.0959	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	125
TIGR01652	1057	TIGR01652, ATPase-Plipid, phospholipid-translocati	2e-25
TIGR01494	543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	2e-17
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	9e-16
PLN03190	1178	PLN03190, PLN03190, aminophospholipid translocase;	4e-08
TIGR01116	917	TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic	2e-04
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	2e-04
TIGR01647	754	TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e	3e-04
TIGR01517	944	TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-	0.001
TIGR01523	1053	TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu	0.001
TIGR01522	884	TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-	0.002

>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase, flippase

 Score = 99.0 bits (247), Expect = 2e-25
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 7/86 (8%)

Query: 4   LRVNLDMGKAFYSWSMQRDPDMKD------TVVRSTTIPEELGRISYLLSDKTGTLTQNS 57
           L V+L++ K+  ++ +  D  M          VR++ + EELG++ Y+ SDKTGTLTQN 
Sbjct: 315 LYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNI 374

Query: 58  MVFRKLHLGTVSYGPDTFDEVRDLLK 83
           M F+K  +  VSYG D F E++D ++
Sbjct: 375 MEFKKCSIAGVSYG-DGFTEIKDGIR 399

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes. Length = 1057

>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 3   GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
            L   + +  A     + +    K  +VR+    EELG++ YL SDKTGTLT+N M  + 
Sbjct: 205 ALPAAVTVALAVGDARLAK----KGILVRNLNALEELGKVDYLCSDKTGTLTKNKMTLQG 260

Query: 63  LHLGTVSYGPDTFDEVRDL 81
           +++        +     D 
Sbjct: 261 VYIDGGKEDNSSSLVACDN 279

The P-type ATPases are a large family of trans-membrane transporters acting on charged substances. The distinguishing feature of the family is the formation of a phosphorylated intermediate (aspartyl-phosphate) during the course of the reaction. Another common name for these enzymes is the E1-E2 ATPases based on the two isolable conformations: E1 (unphosphorylated) and E2 (phosphorylated). Generally, P-type ATPases consist of only a single subunit encompassing the ATPase and ion translocation pathway, however, in the case of the potassium (TIGR01497) and sodium/potassium (TIGR01106) varieties, these functions are split between two subunits. Additional small regulatory or stabilizing subunits may also exist in some forms. P-type ATPases are nearly ubiquitous in life and are found in numerous copies in higher organisms (at least 45 in Arabidopsis thaliana, for instance ). Phylogenetic analyses have revealed that the P-type ATPase subfamily is divided up into groups based on substrate specificities and this is represented in the various subfamily and equivalog models that have been made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525, IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++) TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+, H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++) TIGR01524, IV (phospholipid, flippase) TIGR01652 and V (unknown specificity) TIGR01657. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily. Length = 543

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 71.6 bits (176), Expect = 9e-16
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 3   GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK 62
           GL   + +  A  +  M +D  +    VRS    E LG +  + SDKTGTLTQN M  +K
Sbjct: 313 GLPAVVTIALALGAQRMAKDNAI----VRSLNAIETLGSVDVICSDKTGTLTQNKMTVKK 368

Query: 63  LHLGTVS--YGPDTFDEVRDLLKFTYENMSATADSNTPHKQ 101
           +++             +   LL+F     +A  +S TP K 
Sbjct: 369 IYINGGGKDIDDKDLKDSPALLRFLL--AAALCNSVTPEKN 407

Length = 917

>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 13/76 (17%)

Query: 1   MDGLRVNLDMGKAFYSWSMQRDPDMKDTV------VRSTTIPEELGRISYLLSDKTGTLT 54
           M+ +RV    G+A++   M RD  M D         R+  I E+LG+I Y+ SDKTGTLT
Sbjct: 413 MELVRV----GQAYF---MIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLT 465

Query: 55  QNSMVFRKLHLGTVSY 70
           +N M F+   +  V Y
Sbjct: 466 ENKMEFQCASIWGVDY 481

Length = 1178

>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 26  KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           K+ +VR     E LG  + + SDKTGTLT N M   K+
Sbjct: 273 KNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKV 310

This model describes the P-type ATPase responsible for translocating calcium ions across the endoplasmic reticulum membrane of eukaryotes , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. These pumps transfer Ca2+ from the cytoplasm to the lumen of the endoplasmic reticulum. In humans and mice, at least, there are multiple isoforms of the SERCA pump with overlapping but not redundant functions. Defects in SERCA isoforms are associated with diseases in humans. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the latter of which is modelled by TIGR01522 [Transport and binding proteins, Cations and iron carrying compounds]. Length = 917

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 26  KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSM 58
           K+ +V++    E LG  S + SDKTGTLTQN M
Sbjct: 328 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 360

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 25  MKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKF 84
            K  V R T I EEL  +  L SDKTGTLT N     KL +  +    + FD+  D+L +
Sbjct: 270 KKAIVTRLTAI-EELAGMDILCSDKTGTLTLN-----KLSIDEILPFFNGFDK-DDVLLY 322

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. Length = 754

>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 2   DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFR 61
           +GL + + +  A+    M +D    + +VR     E +G  + + SDKTGTLTQN M   
Sbjct: 342 EGLPLAVTIALAYSMKKMMKD----NNLVRHLAACETMGSATAICSDKTGTLTQNVMSVV 397

Query: 62  KLHLGTVSYGPDTFDE-----VRDLL 82
           + ++G   +            VR++L
Sbjct: 398 QGYIGEQRFNVRDVLRNVPKHVRNIL 423

This model describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes. In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by TIGR01116 and TIGR01522. This model is well separated from those. Length = 944

>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 26  KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFT 85
           ++ +VR     E LG ++ + SDKTGT+TQ  M+ R++ +    +G  + D   D     
Sbjct: 343 RNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIP--RFGTISIDNSDDAFNPN 400

Query: 86  YENMS 90
             N+S
Sbjct: 401 EGNVS 405

Initially described as a calcium efflux ATPase , more recent work has shown that the S. pombe CTA3 gene is in fact a potassium ion efflux pump. This model describes the clade of fungal P-type ATPases responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump. Length = 1053

>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 26  KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL 63
           K  +VR     E LG ++ + SDKTGTLT+N M   K+
Sbjct: 308 KRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKI 345

This model describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
KOG0210|consensus	1051		99.83
PLN03190	1178	aminophospholipid translocase; Provisional	99.65
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	99.59
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	99.49
KOG0202|consensus	972		99.41
KOG0206|consensus	1151		99.41
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.4
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.39
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	99.37
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.36
KOG0204|consensus	1034		99.35
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.35
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.34
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.33
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	99.32
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.32
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.28
PRK10671	834	copA copper exporting ATPase; Provisional	99.26
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.26
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.25
PRK01122	679	potassium-transporting ATPase subunit B; Provision	99.24
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.24
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	99.23
PRK15122	903	magnesium-transporting ATPase; Provisional	99.22
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.2
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.17
PRK14010	673	potassium-transporting ATPase subunit B; Provision	99.14
KOG0203|consensus	1019		98.99
KOG0207|consensus	951		98.89
KOG0205|consensus	942		98.75
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	98.06
KOG0208|consensus	1140		97.82
KOG0209|consensus	1160		97.17
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	94.92

>KOG0210|consensus

Probab=99.83  E-value=8.6e-21  Score=166.42  Aligned_cols=108  Identities=50%  Similarity=0.763  Sum_probs=99.3

Q ss_pred             ceeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHH
Q psy5005           2 DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDL   81 (125)
Q Consensus         2 ~SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~   81 (125)
                      |||+|+++++|.+++|.|..|.+++|+++|..+++|+||+++|+++|||||||||+|.+++++++..+|..+.++++.++
T Consensus       367 ISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTLTqNEM~~KKiHLGTv~~s~e~~~eV~~~  446 (1051)
T KOG0210|consen  367 ISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTLTQNEMEFKKIHLGTVAYSAETMDEVSQH  446 (1051)
T ss_pred             eEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCccccchheeeeeeeeeeeccHhHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHccCCCCCCCCCCCCCcccccCceeecccCCcce
Q psy5005          82 LKFTYENMSATADSNTPHKQMVIGSNKIRRSDHKPGT  118 (125)
Q Consensus        82 l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (125)
                      +++.++.+        .++++ -...++||++++||+
T Consensus       447 i~s~~~~~--------~~~~~-~~~~~~k~~~s~rv~  474 (1051)
T KOG0210|consen  447 IQSLYTPG--------RNKGK-GALSRVKKDMSARVR  474 (1051)
T ss_pred             HHHhhCCC--------ccccc-ccchhhcCcccHHHH
Confidence            99988763        12333 457889999999985

>PLN03190 aminophospholipid translocase; Provisional

Probab=99.65  E-value=2e-16  Score=146.29  Aligned_cols=70  Identities=36%  Similarity=0.519  Sum_probs=65.1

Q ss_pred             ceeEehHHHHHHHHHhHhhcCCCCc------ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCC
Q psy5005           2 DGLRVNLDMGKAFYSWSMQRDPDMK------DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYG   71 (125)
Q Consensus         2 ~SL~V~l~l~~a~~s~~m~~d~~~~------g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~   71 (125)
                      +||+|+++++|.+++++|.+|.+|+      ++.+|+++++|+||+|+|||+|||||||+|+|.|++|.+++..|+
T Consensus       407 ISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~  482 (1178)
T PLN03190        407 ISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYS  482 (1178)
T ss_pred             eeeeeeHHHHHHHHHHHHHhhhhcccccCCCcceeccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcc
Confidence            6999999999999999999999884      367999999999999999999999999999999999999887765

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=99.59  E-value=1.4e-15  Score=139.05  Aligned_cols=70  Identities=43%  Similarity=0.663  Sum_probs=64.5

Q ss_pred             ceeEehHHHHHHHHHhHhhcCCCCc------ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCC
Q psy5005           2 DGLRVNLDMGKAFYSWSMQRDPDMK------DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYG   71 (125)
Q Consensus         2 ~SL~V~l~l~~a~~s~~m~~d~~~~------g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~   71 (125)
                      +||+|++++++++++++|.+|..|.      ++++|+++++|+||++++||+|||||||+|+|.+++|++++..|.
T Consensus       313 isL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~E~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~  388 (1057)
T TIGR01652       313 ISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYG  388 (1057)
T ss_pred             eeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCChHHhcCeeEEEEcCCCceeeeeEEEEEEEECCEEec
Confidence            5899999999999999999888773      499999999999999999999999999999999999998876664

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.49  E-value=1.8e-14  Score=130.54  Aligned_cols=62  Identities=37%  Similarity=0.542  Sum_probs=59.0

Q ss_pred             ceeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005           2 DGLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT   67 (125)
Q Consensus         2 ~SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~   67 (125)
                      .+|++.+++.+++++.+|+++    ++++|+++++|+||++++||+|||||||||+|.|++++..+
T Consensus       312 egLp~~vti~la~g~~~mak~----~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~  373 (917)
T COG0474         312 EGLPAVVTIALALGAQRMAKD----NAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYING  373 (917)
T ss_pred             cchHHHHHHHHHHHHHHHHhc----cchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCC
Confidence            378999999999999999999    78999999999999999999999999999999999999984

>KOG0202|consensus

Probab=99.41  E-value=1.4e-13  Score=122.91  Aligned_cols=62  Identities=32%  Similarity=0.424  Sum_probs=58.0

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV   68 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~   68 (125)
                      +|++.|+++++++.++|+++    +++||.++.+|+||++++||+|||||||+|+|.+.++|+.+.
T Consensus       297 GLPaVvT~tLALG~~rMakk----naIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~  358 (972)
T KOG0202|consen  297 GLPAVVTTTLALGTRRMAKK----NAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDG  358 (972)
T ss_pred             CCcchhhhhHHHhHHHHHhh----hhhhhcccchhhccceeEEecCCCCcccccceEEEEEEeccc
Confidence            57888999999999999999    688999999999999999999999999999999999988653

>KOG0206|consensus

Probab=99.41  E-value=9.3e-14  Score=127.80  Aligned_cols=72  Identities=42%  Similarity=0.641  Sum_probs=67.6

Q ss_pred             ceeEehHHHHHHHHHhHhhcCCCC------cceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcC
Q psy5005           2 DGLRVNLDMGKAFYSWSMQRDPDM------KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPD   73 (125)
Q Consensus         2 ~SL~V~l~l~~a~~s~~m~~d~~~------~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~   73 (125)
                      |||||++++.+.+++++|.+|.+|      ..+.+|+.++.|+||+|++|++|||||||+|.|.|.+|.+.+..|...
T Consensus       341 ISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~  418 (1151)
T KOG0206|consen  341 ISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRN  418 (1151)
T ss_pred             EEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhcceeEEEEcCcCccccceeeeecccccCcccccC
Confidence            799999999999999999999888      367899999999999999999999999999999999999999888653

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.40  E-value=2.2e-13  Score=125.07  Aligned_cols=60  Identities=32%  Similarity=0.443  Sum_probs=56.8

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEec
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLG   66 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~   66 (125)
                      +|++.+++++++++++|+++    +++||+++++|+||++++||+|||||||+|+|.+++++..
T Consensus       324 gLp~~vti~La~g~~rMak~----~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~~~  383 (1053)
T TIGR01523       324 SLIAVLSITMAMGAANMSKR----NVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIP  383 (1053)
T ss_pred             chHHHHHHHHHHHHHHHHhc----CCEeccchhhhhccCccEEEecCcCccccceEEEEEEEEc
Confidence            57888999999999999999    8999999999999999999999999999999999999864

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=99.39  E-value=5e-13  Score=115.50  Aligned_cols=82  Identities=18%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK   83 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~   83 (125)
                      |.+.+.++...+...+.++    |+++|+..++|.|++++++|+|||||||+|+|.+.+++..+. +..+++..+.+++|
T Consensus       243 L~la~p~a~~~~~~~aa~~----gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~~-~~~~~~l~~aa~~e  317 (562)
T TIGR01511       243 LGLATPTVIAVATGLAAKN----GVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDVHVFGD-RDRTELLALAAALE  317 (562)
T ss_pred             hhhHHHHHHHHHHHHHHHC----CeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEEEEEecCCC-CCHHHHHHHHHHHh
Confidence            3445566667777888887    999999999999999999999999999999999999875442 34556788888999


Q ss_pred             hHccCCC
Q psy5005          84 FTYENMS   90 (125)
Q Consensus        84 ~~~~~p~   90 (125)
                      +.++||-
T Consensus       318 ~~s~HPi  324 (562)
T TIGR01511       318 AGSEHPL  324 (562)
T ss_pred             ccCCChH
Confidence            9999993

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=99.37  E-value=6.8e-13  Score=118.19  Aligned_cols=61  Identities=28%  Similarity=0.285  Sum_probs=55.5

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT   67 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~   67 (125)
                      .|++.+.++.+++.++|+++    |+++|+++++|.||.++++|+|||||||+|+|.+.+++..+
T Consensus       251 ~Lp~~~~~~la~g~~r~ak~----gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~  311 (755)
T TIGR01647       251 AMPAVLSVTMAVGAAELAKK----KAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFF  311 (755)
T ss_pred             chHHHHHHHHHHHHHHHHhC----CeEEcccHHHHhccCCcEEEecCCCccccCceEEEEEEecC
Confidence            35667788889999999998    89999999999999999999999999999999999988654

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.36  E-value=1.3e-12  Score=112.59  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccC-CcCcHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSY-GPDTFDEVRDLL   82 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~-~~~~~~~i~~~l   82 (125)
                      |++.+.++.+.+...+.++    |+++|+.+.+|.+|+++++|+|||||||+|+|.+.+++..+... ..+....+.+.+
T Consensus       212 l~l~~~~~~~~~~~~~~~~----gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~~a~~~  287 (556)
T TIGR01525       212 LGLATPVAILVAIGVAARR----GILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLALAAAL  287 (556)
T ss_pred             hhehhHHHHHHHHHHHHHC----CceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHHHHHHH
Confidence            5677788888899999998    89999999999999999999999999999999999987654311 134566677788


Q ss_pred             HhHccCC
Q psy5005          83 KFTYENM   89 (125)
Q Consensus        83 ~~~~~~p   89 (125)
                      ++.++||
T Consensus       288 e~~~~hp  294 (556)
T TIGR01525       288 EQSSSHP  294 (556)
T ss_pred             hccCCCh
Confidence            8999998

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>KOG0204|consensus

Probab=99.35  E-value=8.3e-13  Score=118.30  Aligned_cols=65  Identities=32%  Similarity=0.474  Sum_probs=59.3

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCC
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYG   71 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~   71 (125)
                      .|++.|++.++|..++|.+|    +.+||++++||++|+.+.||+|||||||.|+|.+.+.++++..+.
T Consensus       400 GLPLAVTLsLAys~kkMmkD----~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~~~~k  464 (1034)
T KOG0204|consen  400 GLPLAVTLSLAYSMKKMMKD----NNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGSEHYK  464 (1034)
T ss_pred             CccHHHHHHHHHHHHHHhcc----hhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeecccccc
Confidence            35666777789999999999    678999999999999999999999999999999999999888776

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.35  E-value=7.5e-13  Score=119.97  Aligned_cols=61  Identities=33%  Similarity=0.365  Sum_probs=57.3

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT   67 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~   67 (125)
                      +|++.+++++++++++|.++    ++++|+++++|+||+++++|+|||||||+|+|.+.+++..+
T Consensus       254 ~Lp~~vti~l~~~~~~m~~~----~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~  314 (917)
T TIGR01116       254 GLPAVITTCLALGTRKMAKK----NAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALD  314 (917)
T ss_pred             ccHHHHHHHHHHHHHHHHHC----CcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecC
Confidence            57889999999999999998    89999999999999999999999999999999999998654

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.34  E-value=1.2e-12  Score=118.75  Aligned_cols=61  Identities=33%  Similarity=0.421  Sum_probs=54.9

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV   68 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~   68 (125)
                      |++.++++.+++.++|.++    |+++|+++++|+||+++++|+|||||||+|+|.+++++..+.
T Consensus       342 Lp~~vti~l~~~~~~mak~----~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~  402 (941)
T TIGR01517       342 LPLAVTIALAYSMKKMMKD----NNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQ  402 (941)
T ss_pred             hHHHHHHHHHHHHHHHHhC----CCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecc
Confidence            5566777778899999998    899999999999999999999999999999999999987653

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.33  E-value=1.2e-12  Score=119.48  Aligned_cols=62  Identities=32%  Similarity=0.426  Sum_probs=58.0

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV   68 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~   68 (125)
                      +|++.+++++++++++|.++    ++++|++.++|+||+++++|+|||||||+|+|.+.+++.++.
T Consensus       309 ~L~~~v~i~l~~~~~~m~~~----~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~  370 (997)
T TIGR01106       309 GLLATVTVCLTLTAKRMARK----NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQ  370 (997)
T ss_pred             cchHHHHHHHHHHHHHHHHC----CcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCe
Confidence            57889999999999999998    899999999999999999999999999999999999987654

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.2e-12  Score=114.72  Aligned_cols=75  Identities=17%  Similarity=0.119  Sum_probs=64.2

Q ss_pred             HHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccC
Q psy5005           9 DMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYEN   88 (125)
Q Consensus         9 ~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~   88 (125)
                      .++...+.....+.    |+++|+..++|.+++++++.||||||||+|++.+.++...+.  +++++..+++++|++++|
T Consensus       376 P~ai~~g~g~aA~~----GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~--~e~~~L~laAalE~~S~H  449 (713)
T COG2217         376 PTAILVGIGRAARR----GILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG--DEDELLALAAALEQHSEH  449 (713)
T ss_pred             HHHHHHHHHHHHhC----ceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC--CHHHHHHHHHHHHhcCCC
Confidence            33344455555565    999999999999999999999999999999999999887654  567899999999999999


Q ss_pred             C
Q psy5005          89 M   89 (125)
Q Consensus        89 p   89 (125)
                      |
T Consensus       450 P  450 (713)
T COG2217         450 P  450 (713)
T ss_pred             h
Confidence            9

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=99.32  E-value=1.5e-12  Score=110.32  Aligned_cols=61  Identities=38%  Similarity=0.542  Sum_probs=56.1

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT   67 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~   67 (125)
                      +|++.+++++..+...+.+.    |+++|+.+++|+||+++++|+|||||||+|+|.+.+++..+
T Consensus       195 aL~~~~~~~~~~~~~~~~~~----gilvk~~~~lE~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~  255 (499)
T TIGR01494       195 ALPLAVTIALAVGDARLAKK----GIVVRSLNALEELGKVDYICSDKTGTLTKNEMSFKKVSVLG  255 (499)
T ss_pred             cHHHHHHHHHHHHHHHHHHC----CcEEechhhhhhccCCcEEEeeCCCccccCceEEEEEEecC
Confidence            56788888999999899887    89999999999999999999999999999999999998754

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.28  E-value=5.5e-12  Score=108.37  Aligned_cols=75  Identities=16%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK   83 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~   83 (125)
                      |++.+.++...+...+.++    |+++|+.+.+|.+|+++++|+|||||||+|+|.+.+++..       +...+..+++
T Consensus       212 L~la~~~~~~~~~~~~~k~----gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~-------~~l~~a~~~e  280 (536)
T TIGR01512       212 LVISAPAAYLSAISAAARH----GILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVPA-------EVLRLAAAAE  280 (536)
T ss_pred             cccchHHHHHHHHHHHHHC----CeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeHH-------HHHHHHHHHh
Confidence            5667777788888889888    8999999999999999999999999999999999987542       4666777888


Q ss_pred             hHccCC
Q psy5005          84 FTYENM   89 (125)
Q Consensus        84 ~~~~~p   89 (125)
                      +.+.||
T Consensus       281 ~~~~hp  286 (536)
T TIGR01512       281 QASSHP  286 (536)
T ss_pred             ccCCCc
Confidence            888888

.

>PRK10671 copA copper exporting ATPase; Provisional

Probab=99.26  E-value=5.8e-12  Score=113.00  Aligned_cols=81  Identities=16%  Similarity=0.029  Sum_probs=67.4

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK   83 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~   83 (125)
                      |.+.+.++...+...+.+.    |+++|+.+++|.+|+++++|+|||||||+|+|.+.++...+. +..++...+..++|
T Consensus       483 L~la~p~a~~~~~~~~a~~----gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~l~~a~~~e  557 (834)
T PRK10671        483 LGLATPMSIISGVGRAAEF----GVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVKTFNG-VDEAQALRLAAALE  557 (834)
T ss_pred             hhhhHHHHHHHHHHHHHHC----CeEEecHHHHHhhcCCCEEEEcCCCccccCceEEEEEEccCC-CCHHHHHHHHHHHh
Confidence            3445566667778888887    999999999999999999999999999999999998765432 34556778888999


Q ss_pred             hHccCC
Q psy5005          84 FTYENM   89 (125)
Q Consensus        84 ~~~~~p   89 (125)
                      +.++||
T Consensus       558 ~~s~hp  563 (834)
T PRK10671        558 QGSSHP  563 (834)
T ss_pred             CCCCCH
Confidence            999998

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=99.26  E-value=7.6e-12  Score=111.40  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=58.3

Q ss_pred             HHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          15 YSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        15 ~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      +.....++    |+++|+..++|.|++++++|||||||||+|+|.+.+++..+. ++++.+..+.+++|+.++||
T Consensus       413 ~l~~aar~----gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~l~~aa~~e~~s~hP  482 (741)
T PRK11033        413 GLAAAARR----GALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATG-ISESELLALAAAVEQGSTHP  482 (741)
T ss_pred             HHHHHHHC----CeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCC-CCHHHHHHHHHHHhcCCCCH
Confidence            33444555    899999999999999999999999999999999999875432 44556778888899999998

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.25  E-value=4.1e-12  Score=114.75  Aligned_cols=57  Identities=26%  Similarity=0.357  Sum_probs=52.8

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEE
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLH   64 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~   64 (125)
                      |++.+.++.+.++++|+++    |+++|++.++|+||+++++|+|||||||+|+|.+.+++
T Consensus       302 Lp~~vt~~la~g~~~mak~----~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~  358 (867)
T TIGR01524       302 LPMIVSSNLAKGAINMSKK----KVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHI  358 (867)
T ss_pred             HHHHHHHHHHHHHHHHHhC----CcEEccchhhhhccCccEEEecCCCccccCeEEEEEEe
Confidence            5667778889999999998    89999999999999999999999999999999999975

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=99.24  E-value=1.2e-11  Score=109.50  Aligned_cols=74  Identities=18%  Similarity=0.097  Sum_probs=56.8

Q ss_pred             HHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          11 GKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        11 ~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      ....+..++.++    |+++|++.++|.+|.++++|+|||||||+|+|.+++++..+. +..+.+.......+..+.||
T Consensus       271 i~i~g~~r~ak~----gvLvk~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~-~~~~~ll~~a~~~s~~s~hP  344 (679)
T PRK01122        271 IGIAGMDRVLQA----NVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPG-VTEEELADAAQLSSLADETP  344 (679)
T ss_pred             HHHHHHHHHhcC----CeeecCchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCC-CCHHHHHHHHHHhcCCCCCc
Confidence            335577888888    899999999999999999999999999999999999864321 23333444455555556666

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.24  E-value=5.6e-12  Score=113.92  Aligned_cols=60  Identities=32%  Similarity=0.426  Sum_probs=54.6

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT   67 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~   67 (125)
                      |++.+.++.+++.++|.++    |+++|+++++|+||+++++|+|||||||+|+|.+.+++..+
T Consensus       290 Lp~~vt~~l~~~~~r~ak~----~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~  349 (884)
T TIGR01522       290 LPIIVTVTLALGVLRMSKK----RAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSD  349 (884)
T ss_pred             HHHHHHHHHHHHHHHHhhc----CCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecC
Confidence            5567777889999999998    89999999999999999999999999999999999987644

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=99.23  E-value=1.6e-11  Score=108.70  Aligned_cols=72  Identities=18%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             HHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          13 AFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        13 a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      ..+..++.++    |+++|++.++|.+|.++++|+|||||||+|+|.+.+++..+. ...+.+.......+..++||
T Consensus       274 iag~~r~ar~----gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~-~~~~~ll~~aa~~~~~s~hP  345 (675)
T TIGR01497       274 IAGMDRVLGF----NVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQG-VDEKTLADAAQLASLADDTP  345 (675)
T ss_pred             HHHHHHHHHC----CeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCC-CcHHHHHHHHHHhcCCCCCc
Confidence            3467788888    899999999999999999999999999999999999874321 23334455555566666776

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.22  E-value=8.7e-12  Score=113.11  Aligned_cols=58  Identities=28%  Similarity=0.339  Sum_probs=53.2

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEe
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL   65 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~   65 (125)
                      |++.+.++.+.+..+|+++    |+++|++.++|+||+++++|+|||||||+|+|.+.+++.
T Consensus       335 Lp~~vt~~La~g~~~mak~----~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~  392 (903)
T PRK15122        335 LPMIVSSNLAKGAIAMARR----KVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLD  392 (903)
T ss_pred             HHHHHHHHHHHHHHHHHHc----CCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEc
Confidence            5667778889999999998    899999999999999999999999999999999999764

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.20  E-value=1.2e-11  Score=112.25  Aligned_cols=57  Identities=25%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEE
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLH   64 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~   64 (125)
                      |++.+.++.+.++.+|+++    |+++|+++++|+||.++++|+|||||||+|+|.+.++.
T Consensus       337 LP~~vt~~la~g~~~mak~----~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~  393 (902)
T PRK10517        337 LPMIVTSTLARGAVKLSKQ----KVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHT  393 (902)
T ss_pred             HHHHHHHHHHHHHHHHHhC----CcEEecchhhhhccCCCEEEecCCCccccceEEEEEEe
Confidence            5667777888999999999    89999999999999999999999999999999999864

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=99.17  E-value=2.4e-11  Score=111.67  Aligned_cols=61  Identities=23%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecC
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGT   67 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~   67 (125)
                      .|++.++++.+++.++|.++    ++++|+...+|.+|+++++|+|||||||+|+|.+.+++..+
T Consensus       413 ~LP~~~ti~l~~~~~rL~k~----~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~  473 (1054)
T TIGR01657       413 ALPAELSIGINNSLARLKKK----GIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLS  473 (1054)
T ss_pred             hHHHHHHHHHHHHHHHHHHC----CEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEeccc
Confidence            46788889999999999998    89999999999999999999999999999999999987644

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=99.14  E-value=5.9e-11  Score=105.08  Aligned_cols=53  Identities=21%  Similarity=0.149  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEE
Q psy5005           8 LDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLH   64 (125)
Q Consensus         8 l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~   64 (125)
                      +.+..+.+..+|.++    |+++|++.++|.+|.++++|+|||||||+|++.+.++.
T Consensus       268 ~~~~~~~g~~r~ak~----gvLvk~~~avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~  320 (673)
T PRK14010        268 LSAIGIAGMDRVTQF----NILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFI  320 (673)
T ss_pred             HHHHHHHHHHHHhhC----CEEEeCcHHHHHhhCCCEEEEeCCCcCCCCCeEEEEEE
Confidence            344456678888888    89999999999999999999999999999877666643

>KOG0203|consensus

Probab=98.99  E-value=3.4e-10  Score=101.69  Aligned_cols=64  Identities=33%  Similarity=0.399  Sum_probs=59.4

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccC
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSY   70 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~   70 (125)
                      .|.+++++++..-+++|.++    +|++|++++.|+||..+.||+|||||||+|+|.|.++|.++...
T Consensus       331 GL~~tvTv~LtltakrMa~K----nc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~  394 (1019)
T KOG0203|consen  331 GLLATVTVCLTLTAKRMARK----NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIH  394 (1019)
T ss_pred             CccceehhhHHHHHHHHhhc----eeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCcee
Confidence            46788899999999999999    79999999999999999999999999999999999999988643

>KOG0207|consensus

Probab=98.89  E-value=1.8e-09  Score=97.58  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      |+|+|..+++|.+.+++++.||||||||+|++.+.++..........++..+.+++|+.+.||
T Consensus       567 GvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHP  629 (951)
T KOG0207|consen  567 GVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHP  629 (951)
T ss_pred             ceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCc
Confidence            899999999999999999999999999999999999887665556778999999999999999

>KOG0205|consensus

Probab=98.75  E-value=3.2e-09  Score=93.89  Aligned_cols=78  Identities=24%  Similarity=0.287  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEE----EEecCccC-----------Cc
Q psy5005           8 LDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRK----LHLGTVSY-----------GP   72 (125)
Q Consensus         8 l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~----~~~~~~~~-----------~~   72 (125)
                      +++..+.++.+++++    |.++|.++++|+|+.++++|+|||||||.|++++.+    ++..+..-           ..
T Consensus       297 lsvTMAiGs~rLaqq----gAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~  372 (942)
T KOG0205|consen  297 LSVTMAIGSHRLSQQ----GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRK  372 (942)
T ss_pred             eeehhhHHHHHHHhc----ccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhh
Confidence            333448899999998    889999999999999999999999999999999988    34433211           12


Q ss_pred             CcHHHHHHHHHhHccCC
Q psy5005          73 DTFDEVRDLLKFTYENM   89 (125)
Q Consensus        73 ~~~~~i~~~l~~~~~~p   89 (125)
                      +..|+|.+++-.....|
T Consensus       373 en~DAID~A~v~~L~dP  389 (942)
T KOG0205|consen  373 ENQDAIDAAIVGMLADP  389 (942)
T ss_pred             cChhhHHHHHHHhhcCH
Confidence            34566666666655555

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=98.06  E-value=1.9e-06  Score=63.60  Aligned_cols=41  Identities=29%  Similarity=0.248  Sum_probs=32.6

Q ss_pred             ceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          42 ISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        42 v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      |+++|||||||||++++.+       ..+....+..+...++..+.||
T Consensus         1 i~~i~fDktGTLt~~~~~v-------~~~~~~~~~~~~~~~~~~s~~p   41 (215)
T PF00702_consen    1 IDAICFDKTGTLTQGKMSV-------APPSNEAALAIAAALEQGSEHP   41 (215)
T ss_dssp             ESEEEEECCTTTBESHHEE-------ESCSHHHHHHHHHHHHCTSTSH
T ss_pred             CeEEEEecCCCcccCeEEE-------EeccHHHHHHHHHHhhhcCCCc
Confidence            5789999999999999998       1144556777777777778887

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>KOG0208|consensus

Probab=97.82  E-value=4.6e-05  Score=70.16  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCcc-CCcCcHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVS-YGPDTFDEVRDLL   82 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~-~~~~~~~~i~~~l   82 (125)
                      |+-.+.++-.+...++.++    |+.+=+..-+-.-|+++.+|||||||||+..+-+-.+...+.. .+.+.+....+..
T Consensus       434 LPAaltvG~~~a~~RLkkk----~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~~~~~~~  509 (1140)
T KOG0208|consen  434 LPAALTVGIIYAQSRLKKK----GIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELKVVTEDS  509 (1140)
T ss_pred             chhhhhHHHHHHHHHHHhc----CeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhhhhhhhh
Confidence            3445666667777788887    7888888888888999999999999999999988776553322 2333344444433


Q ss_pred             HhHccCCCCCCC
Q psy5005          83 KFTYENMSATAD   94 (125)
Q Consensus        83 ~~~~~~p~~~~~   94 (125)
                      .+...|-+..++
T Consensus       510 ~~~~~~l~~~~~  521 (1140)
T KOG0208|consen  510 LQLFYKLSLRSS  521 (1140)
T ss_pred             ccceeecccccc
Confidence            344444433333

>KOG0209|consensus

Probab=97.17  E-value=0.00049  Score=63.00  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEe
Q psy5005          27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL   65 (125)
Q Consensus        27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~   65 (125)
                      ++.+-..==+--.|++++.|||||||||+..|.|..+.-
T Consensus       464 ~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag  502 (1160)
T KOG0209|consen  464 GVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAG  502 (1160)
T ss_pred             ceeecCccccccCCceeEEEecCCCccccccEEEEeccc
Confidence            566654444456799999999999999999999988654

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=94.92  E-value=0.049  Score=48.18  Aligned_cols=39  Identities=28%  Similarity=0.320  Sum_probs=34.2

Q ss_pred             ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEe
Q psy5005          27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHL   65 (125)
Q Consensus        27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~   65 (125)
                      +++.+++.++|..|.++++..|||||+|-|+=.-.+++.
T Consensus       284 NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p  322 (681)
T COG2216         284 NVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIP  322 (681)
T ss_pred             ceeecCcchhhhcCCccEEEecccCceeecchhhhheec
Confidence            789999999999999999999999999998765555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3ixz_A	1034	Pig Gastric H+K+-Atpase Complexed With Aluminium Fl		7e-04

>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 26  KDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDE 77
           K+ VV++    E LG  S + SDKTGTLTQN M    L      +  DT ++
Sbjct: 364 KNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTED 415

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	4e-07
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	2e-06
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	6e-06
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	2e-05
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	3e-05

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 37  EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPD 73
           EE+  +  L SDKTGTLT N +   K  +     G +
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVE 354

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 37  EELGRISYLLSDKTGTLTQNSMVFRK 62
           E L  +  L SDKTGTLT+N +    
Sbjct: 367 ESLAGVEILCSDKTGTLTKNKLSLHD 392

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 18/38 (47%), Positives = 20/38 (52%)

Query: 37  EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDT 74
           E LG  S + SDKTGTLTQN M    L      +  DT
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADT 412

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 37  EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDT 74
           E LG  S + SDKTGTLTQN M    +      +  DT
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADT 407

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 37  EELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYE 87
           E LG  S + SDKTGTLT N M   K+ +     G         +   TY 
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYA 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.43
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	99.41
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.41
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	99.4
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.37
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.36
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.27
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	99.25
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	98.75
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	98.85
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	98.31
2kmv_A	185	Copper-transporting ATPase 1; menkes, nucleotide b	96.46
2arf_A	165	Wilson disease ATPase; P-type ATPase,ATP7B, copper	92.99
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	92.14
1svj_A	156	Potassium-transporting ATPase B chain; alpha-beta	91.76

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.43  E-value=7.4e-14  Score=126.08  Aligned_cols=64  Identities=31%  Similarity=0.380  Sum_probs=59.4

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccC
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSY   70 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~   70 (125)
                      +|++.+++++++++++|.++    ++++|+++++|+||++++||+|||||||+|+|.+.++++.+..+
T Consensus       345 ~Lp~~vti~la~~~~rmak~----~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~  408 (1034)
T 3ixz_A          345 GLLATVTVCLSLTAKRLASK----NCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIH  408 (1034)
T ss_pred             ccHHHHHHHHHHHHHHHhhC----CeEecChHHHHhhcCCcEEEcCCCCCcccCeEEEEEEEECCccc
Confidence            57889999999999999998    89999999999999999999999999999999999998876543

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.41  E-value=9.9e-14  Score=120.04  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=70.4

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK   83 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~   83 (125)
                      |.+.++++...+..++.++    |+++|+.+++|++|+++++|+|||||||+|+|.+.+++..+  .++++...+.+.++
T Consensus       292 L~la~p~a~~~~~~~~a~~----gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~~l~~aa~~e  365 (645)
T 3j08_A          292 FGLATPTALTVGMGKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN--GDERELLRLAAIAE  365 (645)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----CCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESS--SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC----CeEecCchHHHHhhCCCEEEEcCcccccCCCeEEEEEEeCC--CCHHHHHHHHHHHh
Confidence            4566778888889999988    89999999999999999999999999999999999998764  34566788888899


Q ss_pred             hHccCC
Q psy5005          84 FTYENM   89 (125)
Q Consensus        84 ~~~~~p   89 (125)
                      ..++||
T Consensus       366 ~~s~hP  371 (645)
T 3j08_A          366 RRSEHP  371 (645)
T ss_dssp             TTCCSH
T ss_pred             hcCCCh
Confidence            999998

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=99.41  E-value=9.1e-14  Score=122.24  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK   83 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~   83 (125)
                      |.+.++++...+..++.++    |+++|+.+++|.+|+++++|+|||||||+|+|.+.+++..+  +.+++...+.++++
T Consensus       386 L~la~p~a~~~~~~~~a~~----gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~--~~~~~~l~~aa~le  459 (736)
T 3rfu_A          386 LGLATPMSIMVGVGKGAQS----GVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDD--FVEDNALALAAALE  459 (736)
T ss_dssp             HHHHHHHHHHHHHHHHHHT----TEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEEESS--SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhc----ceeechHHHHHHhcCCCEEEEeCCCCCcCCceEEEEEEecC--CCHHHHHHHHHHHh
Confidence            4556778888899999988    99999999999999999999999999999999999998433  45667888889999


Q ss_pred             hHccCC
Q psy5005          84 FTYENM   89 (125)
Q Consensus        84 ~~~~~p   89 (125)
                      +.++||
T Consensus       460 ~~s~hP  465 (736)
T 3rfu_A          460 HQSEHP  465 (736)
T ss_dssp             HSSCCH
T ss_pred             hcCCCh
Confidence            999998

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.40  E-value=1.3e-13  Score=120.59  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=70.4

Q ss_pred             eEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHH
Q psy5005           4 LRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLK   83 (125)
Q Consensus         4 L~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~   83 (125)
                      |.+.++++...+..++.++    |+++|+..++|.||+++++|+|||||||+|+|.+.+++..+  ..+++...+.+.++
T Consensus       370 L~la~p~a~~~~~~~~a~~----gilvk~~~~lE~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~--~~~~~~l~~aa~~e  443 (723)
T 3j09_A          370 FGLATPTALTVGMGKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN--GDERELLRLAAIAE  443 (723)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----TCEESSTTHHHHGGGCCEEEEEHHHHTSCSCCEEEEEEESS--SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC----CeEEeChHHHHHhhcCCEEEEcCCCccccCceEEEEEEeCC--CCHHHHHHHHHHHh
Confidence            4566778888889999988    89999999999999999999999999999999999998764  34566778888999


Q ss_pred             hHccCC
Q psy5005          84 FTYENM   89 (125)
Q Consensus        84 ~~~~~p   89 (125)
                      ..++||
T Consensus       444 ~~s~hP  449 (723)
T 3j09_A          444 RRSEHP  449 (723)
T ss_dssp             TTCCSH
T ss_pred             ccCCCc
Confidence            999998

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.37  E-value=2e-13  Score=123.31  Aligned_cols=62  Identities=32%  Similarity=0.426  Sum_probs=57.9

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCc
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTV   68 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~   68 (125)
                      +|++.+++++++++++|.++    |+++|+++++|+||++++||+|||||||+|+|.|.+++..+.
T Consensus       340 ~Lp~~vti~l~~~~~~mak~----~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~  401 (1028)
T 2zxe_A          340 GLLATVTVCLTLTAKRMARK----NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQ  401 (1028)
T ss_dssp             THHHHHHHHHHHHHHHHHTT----TEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEETTE
T ss_pred             hHHHHHHHHHHHHHHHHhhC----CceeccchHhhhhcCceEEeccCCCCCCCCeEEEEEEEECCe
Confidence            57888999999999999998    899999999999999999999999999999999999987653

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.36  E-value=3.3e-13  Score=121.25  Aligned_cols=60  Identities=37%  Similarity=0.422  Sum_probs=55.9

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEec
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLG   66 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~   66 (125)
                      +|++.++++++++.++|+++    |+++|+++++|+||++++||+|||||||+|+|.+.+++..
T Consensus       311 ~Lp~~vt~~la~~~~~ma~~----~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~  370 (995)
T 3ar4_A          311 GLPAVITTCLALGTRRMAKK----NAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFII  370 (995)
T ss_dssp             THHHHHHHHHHHHHHHHHHT----TEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEE
T ss_pred             chHHHHHHHHHHHHHHhccC----CcEeccchhhhhhcCceEEEecCCCCcccCceEEEEEEec
Confidence            46778889999999999998    8999999999999999999999999999999999998764

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=99.27  E-value=2.4e-13  Score=121.61  Aligned_cols=57  Identities=30%  Similarity=0.357  Sum_probs=52.2

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEE
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKL   63 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~   63 (125)
                      +|++.++++++++.++|.++    |+++|+++++|+||+++++|+|||||||+|+|.+.+.
T Consensus       288 aLp~~vti~la~g~~r~ak~----~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~  344 (885)
T 3b8c_A          288 AMPTVLSVTMAIGSHRLSQQ----GAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKN  344 (885)
T ss_dssp             STTTHHHHTTTHHHHHHTTT----SCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHhC----CeEeCCchHHHHHhCCCEEEECCCCCcccCceEEEEE
Confidence            46677888889999999998    8999999999999999999999999999999999754

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=99.25  E-value=6.2e-13  Score=119.46  Aligned_cols=60  Identities=27%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEec
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLG   66 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~   66 (125)
                      +|++.++++++++.++|.++    |+++|++.++|+||++++||+|||||||+|+|.+.+++..
T Consensus       337 aLp~~vti~la~g~~~mak~----~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~  396 (920)
T 1mhs_A          337 GLPAVVTTTMAVGAAYLAKK----KAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTV  396 (920)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT----TCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCC
T ss_pred             hHHHHHHHHHHHHHHHHHhC----CeEEecCchhhhhccCcEEEECCCCCccccceeEEEEeec
Confidence            46677888889999999998    8999999999999999999999999999999999987654

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=98.75  E-value=4.4e-12  Score=97.59  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             ceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCCCC
Q psy5005          27 DTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENMSA   91 (125)
Q Consensus        27 g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p~~   91 (125)
                      |+++|+..++|.++++++++||||||||+|++.+.+++      ..+.+..+.++++..+.||-.
T Consensus        13 gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~------~~~~~l~~~~~~e~~s~hp~a   71 (263)
T 2yj3_A           13 GMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI------GDSLSLAYAASVEALSSHPIA   71 (263)
Confidence            89999999999999999999999999999999998864      345677888899999999844

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=98.85  E-value=1.5e-09  Score=83.80  Aligned_cols=69  Identities=16%  Similarity=0.082  Sum_probs=55.5

Q ss_pred             HHhHhhcCCCCcceEEeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          15 YSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        15 ~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      +++.+.+.    |+++|+..++|.++.++.++||||||||.+.+.+.+++..+.  ..+.+..+.+++++.+.||
T Consensus         9 ~~~~~~~~----gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~--~~~~~l~~~~~~e~~s~hp   77 (287)
T 3a1c_A            9 GSRKGAEL----GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG--DERELLRLAAIAERRSEHP   77 (287)
T ss_dssp             -----CCC----CEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSS--CHHHHHHHHHHHTTTCCSH
T ss_pred             hHHHHHHC----CEEEeCcHHHHHhhcCCEEEEeCCCCCcCCCEEEEEEEeCCC--CHHHHHHHHHHHhhcCCCH
Confidence            45666676    999999999999999999999999999999999998877654  4556777777888888887

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=98.31  E-value=4.6e-07  Score=67.44  Aligned_cols=58  Identities=21%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             EeCCchhhhccCceEEEeeccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          30 VRSTTIPEELGRISYLLSDKTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        30 vr~~~~~E~LG~v~~i~sDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      +|+..++|.++.++.++||++|||+.|++.+.+++..+.  ..+.+..+...+++.+.|+
T Consensus         1 ~k~~~~~e~~~~ik~i~FD~DGTL~d~~~~v~~~~~~~~--~~~~~~~~~~~~~~~s~~~   58 (280)
T 3skx_A            1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNH--SEDELLQIAASLEARSEHP   58 (280)
T ss_dssp             ----CHHHHGGGCCEEEEECCCCCEEEEEEEEEEEESSS--CHHHHHHHHHHHHTTCCSH
T ss_pred             CCChHHHHHhcCCCEEEEeCCCcCCCCcEEEEEEEecCC--CHHHHHHHHHHhhccCCCH
Confidence            588999999999999999999999999999999877654  4455666666666666664

>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A*

Probab=96.46  E-value=0.0012  Score=48.93  Aligned_cols=39  Identities=8%  Similarity=-0.028  Sum_probs=32.1

Q ss_pred             ccceeCceEEEEEEecC--ccCCcCcHHHHHHHHHhHccCC
Q psy5005          51 GTLTQNSMVFRKLHLGT--VSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        51 GTLT~n~m~v~~~~~~~--~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      ||||+|++.+.++....  ..+..+.+..+..++|+.+.||
T Consensus         1 GTLT~G~p~V~~v~~~~~~~~~~~~~lL~laaa~E~~SeHP   41 (185)
T 2kmv_A            1 SFTMHGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHP   41 (185)
T ss_dssp             CCCCSCCCEEEEEEECSCTTTSCHHHHHHHHHHGGGSSSCH
T ss_pred             CCCcCCcEEEEEEEecCCcCCCCHHHHHHHHHHHHccCCCH
Confidence            89999999999987542  2245567889999999999999

>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} PDB: 2koy_A

Probab=92.99  E-value=0.059  Score=38.67  Aligned_cols=38  Identities=8%  Similarity=-0.179  Sum_probs=29.8

Q ss_pred             ceeCceEEEEEEecCc--cCCcCcHHHHHHHHHhHccCCC
Q psy5005          53 LTQNSMVFRKLHLGTV--SYGPDTFDEVRDLLKFTYENMS   90 (125)
Q Consensus        53 LT~n~m~v~~~~~~~~--~~~~~~~~~i~~~l~~~~~~p~   90 (125)
                      ||+|++.|.++.....  .+..+.+..+.+++|+.++||-
T Consensus         1 LT~G~p~V~~v~~~~~~~~~~~~~lL~laaslE~~SeHPl   40 (165)
T 2arf_A            1 AGHMVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPL   40 (165)
T ss_dssp             CCCCCCCEEEEEECCCTTTSCHHHHHHHHHHHHTTSCSTT
T ss_pred             CCCceeEEEEEEeeCCcCCCCHHHHHHHHHHHHccCCChH
Confidence            7999999999765421  1345668899999999999993

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=92.14  E-value=0.039  Score=42.06  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=25.6

Q ss_pred             ceEEeCCchhhhc---------cCceEEEeeccccceeCceEEEE
Q psy5005          27 DTVVRSTTIPEEL---------GRISYLLSDKTGTLTQNSMVFRK   62 (125)
Q Consensus        27 g~lvr~~~~~E~L---------G~v~~i~sDKTGTLT~n~m~v~~   62 (125)
                      ++++|+...+|.+         .++. +++|||||||+.......
T Consensus        20 ~v~ikd~~~~e~~i~~~~kgg~~kL~-VV~DfdgTLT~~~~~g~~   63 (297)
T 4fe3_A           20 SVRIKNPTRVEEIICGLIKGGAAKLQ-IITDFNMTLSRFSYNGKR   63 (297)
T ss_dssp             TEECSCHHHHHHHHHHHHHHHHHHEE-EEECCTTTTBCSEETTEE
T ss_pred             CeEEcChHHHHHHHHHHHhCcchhEE-EEEcCCCCceeeccCCeE
Confidence            7899999888873         2333 577999999987654333

>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*

Probab=91.76  E-value=0.059  Score=38.75  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=26.8

Q ss_pred             ccccceeCceEEEEEEecCccCCcCcHHHHHHHHHhHccCC
Q psy5005          49 KTGTLTQNSMVFRKLHLGTVSYGPDTFDEVRDLLKFTYENM   89 (125)
Q Consensus        49 KTGTLT~n~m~v~~~~~~~~~~~~~~~~~i~~~l~~~~~~p   89 (125)
                      ..||+|-|+..+.+++..+ .++++++..+++++|+.+.||
T Consensus        13 ~~~tit~gnr~vt~v~~~~-g~~e~elL~lAAs~E~~SeHP   52 (156)
T 1svj_A           13 SSGHGGRHNRQASEFIPAQ-GVDEKTLADAAQLASLADETP   52 (156)
T ss_dssp             --------CEEEEEEEECT-TSCHHHHHHHHHHTTSSCCSH
T ss_pred             CCCceecCCCeEEEEEecC-CCCHHHHHHHHHHHhCcCCCH
Confidence            4699999999999987643 356778899999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	97.64

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.64  E-value=8.4e-07  Score=71.69  Aligned_cols=56  Identities=23%  Similarity=0.197  Sum_probs=50.0

Q ss_pred             eeEehHHHHHHHHHhHhhcCCCCcceEEeCCchhhhccCceEEEeecc--ccceeCceEEEE
Q psy5005           3 GLRVNLDMGKAFYSWSMQRDPDMKDTVVRSTTIPEELGRISYLLSDKT--GTLTQNSMVFRK   62 (125)
Q Consensus         3 SL~V~l~l~~a~~s~~m~~d~~~~g~lvr~~~~~E~LG~v~~i~sDKT--GTLT~n~m~v~~   62 (125)
                      .|++.+++++++++++|+++    +++||++.++|++|+..+.|.|||  ++|+.|.+.+.-
T Consensus       195 gLp~~vti~La~~~~rmak~----~~lVr~L~avE~~g~~~~~~~~k~i~~~l~~n~~~v~~  252 (472)
T d1wpga4         195 GLPAVITTCLALGTRRMAKK----NAIVRSLPSVETLGRAIYNNMKQFIRYLISSNVGEVVC  252 (472)
T ss_dssp             THHHHHHHHHHHHHHHHHTT----TEEESCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhc----cchhhhHHHHHHHHHHHHHHhHHhhhhhhhhhHHHHHH
Confidence            46778899999999999999    899999999999999999999998  889998765433