Psyllid ID: psy5016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
Protein Sequence
MWDMNPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEccccccccccccEEEEEEccccHHHccccHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHcccccccccEEEEcccccEEEEcccccEEEEccccccHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHccccccHHHHHHHcccccccccccEEEEEcccccccccccccEEEEccccccccccccccccHHHHHHHHHHcccEEEEccccHHHHHHHHHHcHHcccccEEEccHHHHHHHccccccEEEEEEcccccccEEEEEcccccccccccccEEEcccccccEEEEEcccccccccccccEEEEEcccccccccccccccccccccccccccEEEEcccccEEEEcccccEEEEccccccHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccEcEccEccccEEEEEEcccccEcccccccEEEEcccHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEcccccccEEEccccccccccEEEEcHHHHHccccccccccEEEEEcccHHHHHHHHHHHcccEEEccHHHHHHHHHHHHcHHHcccccEEEEHccccccEHEccccEEEEEEEcccccccEEEEEcccccHHHEEEEEcccccccccEEEEEEcccccEcccccccEEEEcccccccccHHHHHHHHcccccccccccEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mwdmnptdlqfstlssssfqakvvdhnnrivpfgtpgellIRGHCnmlgywedeqktketigpdrwlrtgrykktSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLvsdqfvlredgygqVVGRIKDMIIrggeniypkEIEEFIQTHPNVLEayaygvpdermgeeVGISIKLKenaklnayedksissdyhEFETMYDsimahpnrttpyyqwwsydpnqsyvthdngfpvdYNRALYSLKmssllphnfsAEVEAHynqksdidweyADKCEKSMQGWAKTLSSEynsyagpvtlrrnlidplEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFkkwmnpkfstttrkvaltwpnsmdseARIYHYKKYLreeenitvpdsagrsifekdqfvlredgygqVVGRIKDMIIrggeniypkEIEEFIQTHPNVLEayaygvpdermgeeVGISIKLKENAKLNADDIRTFCKGKVSKF
Flexible Loop (DISEMBL)
MWDMNPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEdeqktketigpdrwlrtgryKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKlkenaklnayedksissdYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRkvaltwpnsmdseARIYHYKKYLREEenitvpdsagrsifekdqfvlredgygqvvgRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIklkenaklnaddirtfckgkvskf
Low Complexity Region (SEG)
MWDMNPtdlqfstlssssfqAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLqqqqqqqIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Disordered region (IsUnstruct)
********************AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI***************GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC*******
Disordered Region (DISOPRED)
**DMNPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVK***********YHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Disordered Region (DISEMBL)
*********QFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK*********QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Disordered Region (DISPRO)
****NPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWDMNPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	485	2.2.26 [Sep-21-2011]
Q0P4F7	606	Acyl-CoA synthetase famil	yes	N/A	0.276	0.221	0.447	1e-31
Q4R4Z9	618	Acyl-CoA synthetase famil	N/A	N/A	0.245	0.192	0.410	6e-27
Q5R9G9	615	Acyl-CoA synthetase famil	yes	N/A	0.245	0.193	0.403	1e-26
Q17QJ1	615	Acyl-CoA synthetase famil	yes	N/A	0.272	0.214	0.411	2e-26
Q8VCW8	615	Acyl-CoA synthetase famil	yes	N/A	0.272	0.214	0.394	2e-26
Q499N5	615	Acyl-CoA synthetase famil	yes	N/A	0.272	0.214	0.388	1e-25
Q96CM8	615	Acyl-CoA synthetase famil	yes	N/A	0.251	0.198	0.389	1e-25
O31826	549	Putative acyl-CoA synthet	yes	N/A	0.111	0.098	0.505	5e-23
P69451	561	Long-chain-fatty-acid--Co	N/A	N/A	0.282	0.244	0.329	7e-17
P69452	561	Long-chain-fatty-acid--Co	yes	N/A	0.282	0.244	0.329	7e-17

>sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 93/172 (54%), Gaps = 38/172 (22%)

Query: 16  SSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
           S   +AKVVD     IVP G  GEL+IRG+C ML YW+DE+KT+E I  DRW +TG    
Sbjct: 428 SPHTEAKVVDPTTGEIVPLGAQGELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIAS 487

Query: 75  TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
                                            DQF      Y ++ GRIKD+IIRGGEN
Sbjct: 488 L--------------------------------DQF-----AYCKIEGRIKDLIIRGGEN 510

Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKS 186
           IYP EIE+F+ THP +LEA   GV DERMGEEV   I+LKE  +    E K+
Sbjct: 511 IYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACIRLKEGQECTVEEIKA 562

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 80/156 (51%), Gaps = 37/156 (23%)

Query: 33  FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ 92
             TPGEL IRG+C MLGYW + QKT E +  D+W RTG                      
Sbjct: 458 LNTPGELCIRGYCVMLGYWGEPQKTGEAVDQDKWYRTG---------------------- 495

Query: 93  QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE 152
                          D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E
Sbjct: 496 ---------------DIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQE 540

Query: 153 AYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSIS 188
               GV D+RMGEE+   I+LK+  +  A E K+  
Sbjct: 541 VQVVGVKDDRMGEEICACIRLKDGEETTAEEMKAFC 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 80/156 (51%), Gaps = 37/156 (23%)

Query: 33  FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ 92
             TPGEL IRG+C MLGYW + QKT+E +  D+W RTG                      
Sbjct: 455 LNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYRTG---------------------- 492

Query: 93  QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE 152
                          D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E
Sbjct: 493 ---------------DVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQE 537

Query: 153 AYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSIS 188
               GV D+RMGEE+   I+LK+  +    E K+  
Sbjct: 538 VQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFC 573

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q17QJ1|ACSF2_BOVIN Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 90/170 (52%), Gaps = 38/170 (22%)

Query: 20  QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           +A++V+     +    TPGEL IRG+C MLGYW + QKT+E IG D+W RTG        
Sbjct: 441 EAQIVNTETGTLTELNTPGELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTG-------- 492

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D  ++ E G+ ++VGR KDMIIRGGENIYP 
Sbjct: 493 -----------------------------DIAMMDEQGFCKIVGRSKDMIIRGGENIYPA 523

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSIS 188
           E+E+F  THP V E    GV D+RMGEE+   I+LKE  K  A E K+  
Sbjct: 524 ELEDFFHTHPQVQEVQVVGVKDDRMGEEICACIRLKEGEKTTAEEIKAFC 573

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 86/170 (50%), Gaps = 38/170 (22%)

Query: 20  QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           +A++V+     +     PGEL IRG+C M GYW + QKT ET+G D+W RTG        
Sbjct: 441 EAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTG-------- 492

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D  ++ E G+ ++VGR KDMIIRGGENIYP 
Sbjct: 493 -----------------------------DIALMDEQGFCKIVGRSKDMIIRGGENIYPA 523

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSIS 188
           E+E+F   HP V EA   GV DERMGEE+   I+LK      A E K+  
Sbjct: 524 ELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKSGETTTAEEIKAFC 573

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 84/170 (49%), Gaps = 38/170 (22%)

Query: 20  QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           +A++V+     +     PGEL IRG+C M GYW + QKT ET+G DRW RTG        
Sbjct: 441 EAQIVNMETGELTKLNMPGELCIRGYCVMQGYWGEPQKTFETVGQDRWYRTG-------- 492

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D   + E G+ ++VGR KDMIIRGGENIYP 
Sbjct: 493 -----------------------------DIASMDEQGFCRIVGRSKDMIIRGGENIYPA 523

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSIS 188
           E+E+F   HP V EA   GV D+RMGEE+   I+LK        E K+  
Sbjct: 524 ELEDFFHKHPQVQEAQVVGVKDDRMGEEICACIRLKSGETTTEEEIKAFC 573

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 80/159 (50%), Gaps = 37/159 (23%)

Query: 30  IVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLK 89
           +    TPGEL IRG+C MLGYW + QKT+E +  D+W  TG                   
Sbjct: 452 LAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTG------------------- 492

Query: 90  PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN 149
                             D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP 
Sbjct: 493 ------------------DVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPK 534

Query: 150 VLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSIS 188
           V E    GV D+RMGEE+   I+LK+  +    E K+  
Sbjct: 535 VQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFC 573

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 66/91 (72%)

Query: 394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 453
           +F  D  V+ EDGY ++ GR+KDM+IRGGENIYP+EIEEF+  HP VL+    GVPD + 
Sbjct: 419 LFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKF 478

Query: 454 GEEVGISIKLKENAKLNADDIRTFCKGKVSK 484
           GEE    IKLK+   ++ D+++ +CKGK+++
Sbjct: 479 GEEAAAWIKLKDGKSVSPDELKAYCKGKIAR 509

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P69451|LCFA_ECOLI Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 42/179 (23%)

Query: 1   MWDMNPTDLQFST----LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQK 56
           +  +NP D+ + +    L   S +AK+VD ++  VP G PGEL ++G   MLGYW+    
Sbjct: 365 LVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDA 424

Query: 57  TKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDG 116
           T E I  + WL TG                                     D  V+ E+G
Sbjct: 425 TDEIIK-NGWLHTG-------------------------------------DIAVMDEEG 446

Query: 117 YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
           + ++V R KDMI+  G N+YP EIE+ +  HP V E  A GVP    GE V I +  K+
Sbjct: 447 FLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKD 505

Catalyzes the esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids.

Escherichia coli (strain K12) (taxid: 83333)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P69452|LCFA_ECOL6 Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fadD PE=3 SV=1

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 42/179 (23%)

Query: 1   MWDMNPTDLQFST----LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQK 56
           +  +NP D+ + +    L   S +AK+VD ++  VP G PGEL ++G   MLGYW+    
Sbjct: 365 LVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDA 424

Query: 57  TKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDG 116
           T E I  + WL TG                                     D  V+ E+G
Sbjct: 425 TDEIIK-NGWLHTG-------------------------------------DIAVMDEEG 446

Query: 117 YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
           + ++V R KDMI+  G N+YP EIE+ +  HP V E  A GVP    GE V I +  K+
Sbjct: 447 FLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKD 505

Catalyzes the esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
157130154	1017	AMP dependent coa ligase [Aedes aegypti]	0.874	0.416	0.284	2e-59
189240709	575	PREDICTED: similar to CG12512 CG12512-PA	0.255	0.215	0.503	5e-40
157130156	578	AMP dependent coa ligase [Aedes aegypti]	0.268	0.224	0.497	2e-39
157106378	586	AMP dependent coa ligase [Aedes aegypti]	0.288	0.238	0.456	9e-39
157106382	546	AMP dependent coa ligase [Aedes aegypti]	0.243	0.216	0.522	9e-39
157106384	597	AMP dependent coa ligase [Aedes aegypti]	0.263	0.214	0.496	1e-38
403183212	894	AAEL017299-PA [Aedes aegypti]	0.288	0.156	0.469	2e-38
170028425	853	acetyl-coenzyme A synthetase [Culex quin	0.307	0.174	0.465	5e-38
170028419	574	2-succinylbenzoate-CoA ligase [Culex qui	0.282	0.238	0.477	6e-38
158293300	594	AGAP008557-PA [Anopheles gambiae str. PE	0.284	0.232	0.448	7e-38

>gi|157130154|ref|XP_001661845.1| AMP dependent coa ligase [Aedes aegypti] gi|108872001|gb|EAT36226.1| AAEL011676-PA [Aedes aegypti]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 167/586 (28%), Positives = 259/586 (44%), Gaps = 162/586 (27%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           ++AKVVD +   VPFGT GEL +RG+  MLGYW DEQKTKETI  D+WL+TG        
Sbjct: 438 YEAKVVDQDGNTVPFGTSGELWVRGYGTMLGYWGDEQKTKETIDVDKWLKTG-------- 489

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        DQF LREDGYG++VGR+K+M+IRGGENIYPK
Sbjct: 490 -----------------------------DQFQLREDGYGKIVGRMKEMVIRGGENIYPK 520

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL--------------KENAKLNAYED 184
           E+E+F+ THP +LE +  GVPDERMGEE+   + +              K   K     +
Sbjct: 521 ELEDFLCTHPKILETHCIGVPDERMGEEICAYVGINPAFQAPEAEYALNKAGVKALILAE 580

Query: 185 KSISSDYHEFET--------------------MYDSIMAHPNRTTPYYQWWSY------- 217
           +  + +Y++  T                      ++++   N  +      SY       
Sbjct: 581 QHFTQNYYDLTTQVVPELKNSLPGKLRSTRVPTLETVVVDTNNGSALPGTISYRDMLQLP 640

Query: 218 --------DPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEY 269
                   +P QS ++ D+G  + +      L  ++L+ HN       H   +++ D + 
Sbjct: 641 TEQNISAIEPLQSSISPDSGLNMQFTSGTTGLPKAALVTHNGFINNAIHLAHRNEFDVKQ 700

Query: 270 ADKCE-------------------------------KSMQGWAKTLSSEYNSYAGPVTLR 298
              C                                K M+     +  +  +  G  T+ 
Sbjct: 701 HRICLQLPLFHAFAMVVGVLTAFTYGTTIVLPGARYKPMESIEAIIKEKCTAIYGTPTMY 760

Query: 299 RNLIDPLEIVQNRIDDVEYEF------QEKMFKDVKNYLITPALKGLYHFKKWMNPKFST 352
            +L++ +     ++  V+           ++F D+   L     K +Y   +     F +
Sbjct: 761 VDLVNKVRETNQKLPPVDLAVTGGATCSPQLFSDILEVLNVRKAKTVYGLTEACGIVFQS 820

Query: 353 ----TTRKVALTWPNSMDSEARIYHYKKYLREEENITVP---------DSAGRSIF---- 395
               +  ++  T  + MD      H++  + + +  TVP          S+G  +     
Sbjct: 821 LFDDSREEILETVGHIMD------HFEAKVVDGQGNTVPFGTPGELWVRSSGMMLGYWGD 874

Query: 396 -EKDQFVLREDG--------------YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 440
            +K +  L  DG              YG++VGRIK++IIRGGENI+P+EIE+++ THP V
Sbjct: 875 EKKTKETLDVDGWLRTGDQFVLREDGYGKIVGRIKEIIIRGGENIFPREIEDYLNTHPKV 934

Query: 441 LEAYAYGVPDERMGEEVGISIKLKEN-AKLNADDIRTFCKGKVSKF 485
           LE +  GVPD RMGEE+   ++LKE    L  D+I+ FCKGK++ F
Sbjct: 935 LETHCVGVPDSRMGEEICAFVRLKEEWQMLTFDEIKDFCKGKLAHF 980

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240709|ref|XP_001813711.1| PREDICTED: similar to CG12512 CG12512-PA [Tribolium castaneum] gi|270013541|gb|EFA09989.1| hypothetical protein TcasGA2_TC012154 [Tribolium castaneum]

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 100/161 (62%), Gaps = 37/161 (22%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + K+VD +  +VP GTPGEL IR +CNMLGYWEDE KTKE IGPD WL TG         
Sbjct: 406 EVKIVDKDGVVVPCGTPGELCIRAYCNMLGYWEDEAKTKEMIGPDNWLMTG--------- 456

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       DQF+L EDGYG+VVGR+K+MIIRGGENI+PKE
Sbjct: 457 ----------------------------DQFILEEDGYGKVVGRLKEMIIRGGENIFPKE 488

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
           IEEF+ +HPN+LE +  G+P ER+GEEV   I++K   K+ 
Sbjct: 489 IEEFLNSHPNILETHVIGLPHERLGEEVCACIRVKPGTKVT 529

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130156|ref|XP_001661846.1| AMP dependent coa ligase [Aedes aegypti] gi|108872002|gb|EAT36227.1| AAEL011677-PA [Aedes aegypti]

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 108/169 (63%), Gaps = 39/169 (23%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           ++AKVVD N  +VPFG PGEL +RG+  MLGYWEDEQKTKETIG D+WL+TG        
Sbjct: 402 WEAKVVDQNGALVPFGMPGELCVRGYGTMLGYWEDEQKTKETIGMDKWLKTG-------- 453

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        DQFVLREDGYG++VGRIK+++IRGGENIYP+
Sbjct: 454 -----------------------------DQFVLREDGYGKIVGRIKEVVIRGGENIYPR 484

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSI 187
           EIE+ + THP+VLE +  GVPD+RMGEEV   ++L  N  +N ++   +
Sbjct: 485 EIEDVLITHPDVLEVHCVGVPDDRMGEEVCAFVRL--NNGVNEFDRAQV 531

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106378|ref|XP_001649296.1| AMP dependent coa ligase [Aedes aegypti] gi|108868852|gb|EAT33077.1| AAEL014664-PA [Aedes aegypti]

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 110/186 (59%), Gaps = 46/186 (24%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           ++AKVVD +   VPFGT GEL +RG+  MLGYW DEQKTKETI  D+WL+TG        
Sbjct: 407 YEAKVVDQDGNTVPFGTSGELWVRGYGTMLGYWGDEQKTKETIDVDKWLKTG-------- 458

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        DQF LREDGYG++VGR+K+M+IRGGENIYPK
Sbjct: 459 -----------------------------DQFQLREDGYGKIVGRMKEMVIRGGENIYPK 489

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMY 198
           E+E+F+ THP +LE +  GVPDERMGEE+   ++L         +D S+S D+ E +   
Sbjct: 490 ELEDFLCTHPKILETHCIGVPDERMGEEICAYVRL---------QDSSMSLDHAEMKAFC 540

Query: 199 DSIMAH 204
              +AH
Sbjct: 541 KGKIAH 546

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106382|ref|XP_001649298.1| AMP dependent coa ligase [Aedes aegypti] gi|108868854|gb|EAT33079.1| AAEL014665-PA [Aedes aegypti]

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 101/155 (65%), Gaps = 37/155 (23%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           ++AKVVD N  +VPFG PGEL +RG+  MLGYWEDEQKTKETI  D+WL+TG        
Sbjct: 370 WEAKVVDQNGDLVPFGMPGELCVRGYGTMLGYWEDEQKTKETIAIDKWLKTG-------- 421

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        DQFVLREDGYG++VGRIK+++IRGGENIYP+
Sbjct: 422 -----------------------------DQFVLREDGYGKIVGRIKEVVIRGGENIYPR 452

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
           EIE+ + THP+VLE +  GVPD+RMGEEV   ++L
Sbjct: 453 EIEDVLITHPDVLEVHCVGVPDDRMGEEVCAFVRL 487

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106384|ref|XP_001649299.1| AMP dependent coa ligase [Aedes aegypti] gi|108868855|gb|EAT33080.1| AAEL014662-PA [Aedes aegypti]

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 103/165 (62%), Gaps = 37/165 (22%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           F+AKVVD+    VPFGTPGEL +RG+  MLGYWE+EQKTKE IG D WL+TG        
Sbjct: 421 FEAKVVDNEGNAVPFGTPGELCLRGYGTMLGYWEEEQKTKEIIGADHWLKTG-------- 472

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        DQFVL ++GYG VVGRIK++IIRGGEN+YPK
Sbjct: 473 -----------------------------DQFVLSQNGYGTVVGRIKEVIIRGGENVYPK 503

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           EIE+ + THP++LEAY  GVPDER+ EE+   +++KE A   A +
Sbjct: 504 EIEDILNTHPHLLEAYCIGVPDERLVEEICAFVRVKETAPKGAID 548

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183212|gb|EJY57933.1| AAEL017299-PA [Aedes aegypti]

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 108/179 (60%), Gaps = 39/179 (21%)

Query: 7   TDLQFSTLSS--SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD 64
           T++  ST+      F+AKV+D     VPFGTPGEL +RG+  MLGYWE+EQKTKE IG D
Sbjct: 703 TEVALSTVGKLMEHFEAKVIDLEGNTVPFGTPGELCLRGYGTMLGYWEEEQKTKEIIGAD 762

Query: 65  RWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRI 124
            WL+TG                                     DQFVL ++GYG VVGRI
Sbjct: 763 HWLKTG-------------------------------------DQFVLSQNGYGTVVGRI 785

Query: 125 KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           K++IIRGGEN+YPKEIE+ + THP++LEAY  GVPDER+ EE+   +++KE A   A +
Sbjct: 786 KEVIIRGGENVYPKEIEDILNTHPHLLEAYCIGVPDERLVEEICAFVRVKETAPKGAID 844

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028425|ref|XP_001842096.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus] gi|167874251|gb|EDS37634.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus]

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 109/189 (57%), Gaps = 40/189 (21%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           ++AKVVD     VPFGTPGEL +RG+  MLGYW D +KTKETI  D+WLRTG        
Sbjct: 163 YEAKVVDSAGNTVPFGTPGELWVRGYGTMLGYWNDPKKTKETIDVDKWLRTG-------- 214

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        DQFVLR DGYG++VGRIK++IIRGGENI+PK
Sbjct: 215 -----------------------------DQFVLRADGYGKIVGRIKEVIIRGGENIFPK 245

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KLNAYEDKSISSDYHEFETM 197
           EIE+F+  HP +LE +   VPDERMGEEV   ++LK+   +L+  E +     YH  E  
Sbjct: 246 EIEDFLNAHPKILETHCIAVPDERMGEEVCAYVRLKDGKEQLDLSEIRDYCLSYHRCEGK 305

Query: 198 YDSIMAHPN 206
           Y   M H N
Sbjct: 306 YP--MVHRN 312

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028419|ref|XP_001842093.1| 2-succinylbenzoate-CoA ligase [Culex quinquefasciatus] gi|167874248|gb|EDS37631.1| 2-succinylbenzoate-CoA ligase [Culex quinquefasciatus]

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 106/174 (60%), Gaps = 37/174 (21%)

Query: 3   DMNPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG 62
           D   T L+     +  ++AKVVD    IVPFGTPGEL +RG  N+LGYW DE KTKE +G
Sbjct: 380 DSTQTALESVGRIADHYEAKVVDREGGIVPFGTPGELWVRGFGNLLGYWGDEDKTKEIMG 439

Query: 63  PDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVG 122
           PD WL+TG                                     DQFVLR DGYG++VG
Sbjct: 440 PDGWLKTG-------------------------------------DQFVLRPDGYGRIVG 462

Query: 123 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
           RIK++IIRGGENIYP+EIE+ + THP +LE++  GVP+ER+GEEV   I+LK++
Sbjct: 463 RIKELIIRGGENIYPREIEDVLNTHPAILESHCIGVPNERLGEEVCAYIRLKDS 516

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293300|ref|XP_314666.4| AGAP008557-PA [Anopheles gambiae str. PEST] gi|157016639|gb|EAA10067.4| AGAP008557-PA [Anopheles gambiae str. PEST]

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 111/176 (63%), Gaps = 38/176 (21%)

Query: 1   MWDMNPTDLQFST-LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
           +++ +P D+Q +    +  ++AKV+D +  IVPFGT GEL +RG+  MLGYW DE+KTKE
Sbjct: 402 LFEESPEDVQQTVGHVTDHYEAKVIDRDGHIVPFGTAGELCVRGYGTMLGYWGDEKKTKE 461

Query: 60  TIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQ 119
           TI  DRWLRTG                                     DQF+LREDGYG+
Sbjct: 462 TIAADRWLRTG-------------------------------------DQFMLREDGYGK 484

Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
           +VGR+K+++IRGGENIYPKE+E+++ T+P +LE +  GVPDER GEE+   ++LK+
Sbjct: 485 IVGRLKEVVIRGGENIYPKEVEDYLNTYPKILEVHCIGVPDERTGEELCAYVRLKD 540

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
FB|FBgn0031703	593	CG12512 [Drosophila melanogast	0.224	0.183	0.473	2.4e-21
UNIPROTKB|G1K208	614	ACSF2 "Acyl-CoA synthetase fam	0.181	0.143	0.556	2.8e-31
UNIPROTKB|Q17QJ1	615	ACSF2 "Acyl-CoA synthetase fam	0.181	0.143	0.556	2.8e-31
UNIPROTKB|E1BS15	589	ACSF2 "Uncharacterized protein	0.181	0.149	0.579	3.9e-31
UNIPROTKB|E1BVI3	593	ACSF2 "Uncharacterized protein	0.181	0.148	0.579	4.1e-31
UNIPROTKB|F1PTR3	612	ACSF2 "Uncharacterized protein	0.181	0.143	0.522	9.9e-31
UNIPROTKB|F1RT96	609	ACSF2 "Uncharacterized protein	0.181	0.144	0.545	2.2e-30
UNIPROTKB|B4DUF5	455	ACSF2 "Acyl-CoA synthetase fam	0.181	0.193	0.522	5.3e-29
MGI|MGI:2388287	615	Acsf2 "acyl-CoA synthetase fam	0.181	0.143	0.545	1.1e-28
UNIPROTKB|E9PF16	572	ACSF2 "Acyl-CoA synthetase fam	0.181	0.153	0.522	2.3e-28

FB|FBgn0031703 CG12512 [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 53/112 (47%), Positives = 76/112 (67%)

Query:   377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 436
             Y  +EE         R +   DQFVL  +GYG++VGR+K+M+IRGGENI+PKEIE+F+  
Sbjct:   441 YHDDEEKTKETIGNDRWLRTGDQFVLEANGYGRIVGRLKEMLIRGGENIFPKEIEDFLNA 500

Query:   437 HPNVLEAYAYGVPDERMGEEVGISIKLKEN---AKLNADDIRTFCKGKVSKF 485
             HP V+EA+  GVPDER+GEEV   ++L+E    A   A+ ++ + KGK++ F
Sbjct:   501 HPQVIEAHVIGVPDERLGEEVCAYVRLEEGVDPASFTAETLKAYAKGKLAHF 552

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|G1K208 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 49/88 (55%), Positives = 63/88 (71%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D  ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct:   492 DIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEI 551

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+LKE  K  A++I+ FCKGK+S F
Sbjct:   552 CACIRLKEGEKTTAEEIKAFCKGKISHF 579

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q17QJ1 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 49/88 (55%), Positives = 63/88 (71%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D  ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct:   493 DIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEI 552

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+LKE  K  A++I+ FCKGK+S F
Sbjct:   553 CACIRLKEGEKTTAEEIKAFCKGKISHF 580

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
 Identities = 51/88 (57%), Positives = 60/88 (68%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D   L E GY +++GR KDMIIRGGENIYP EIE+F+ THP V E    GV D RMGEEV
Sbjct:   467 DIATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEV 526

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+L+      ADDI+ FCKGK+S F
Sbjct:   527 CACIRLRAGQSCAADDIKAFCKGKISHF 554

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
 Identities = 51/88 (57%), Positives = 60/88 (68%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D   L E GY +++GR KDMIIRGGENIYP EIE+F+ THP V E    GV D RMGEEV
Sbjct:   467 DIATLDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEV 526

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+L+      ADDI+ FCKGK+S F
Sbjct:   527 CACIRLRAGQSCAADDIKAFCKGKISHF 554

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PTR3 ACSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 46/88 (52%), Positives = 60/88 (68%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D   + + G+ ++VGR KDMIIRGGENIYP E+E+F   HP VLE    GV D RMGEE+
Sbjct:   487 DIAAIDKQGFCKIVGRSKDMIIRGGENIYPAELEDFFHKHPQVLEVQVVGVKDARMGEEI 546

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+LK+  K   ++I+ FCKGK+S F
Sbjct:   547 CACIRLKKGEKTTEEEIKAFCKGKISHF 574

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 260 (96.6 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
 Identities = 48/88 (54%), Positives = 62/88 (70%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D  V+ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V +    GV D RMGEE+
Sbjct:   487 DIAVMDEQGFCRIVGRAKDMIIRGGENIYPAELEDFFHTHPQVQDVQVVGVKDNRMGEEI 546

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+LK+  K  A++I+ FCKGK+S F
Sbjct:   547 CACIRLKKGEKTTAEEIKAFCKGKISHF 574

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
 Identities = 46/88 (52%), Positives = 61/88 (69%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct:   333 DVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEI 392

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+LK+  +   ++I+ FCKGK+S F
Sbjct:   393 CACIRLKDGEETTVEEIKAFCKGKISHF 420

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2388287 Acsf2 "acyl-CoA synthetase family member 2" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
 Identities = 48/88 (54%), Positives = 61/88 (69%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D  ++ E G+ ++VGR KDMIIRGGENIYP E+E+F   HP V EA   GV DERMGEE+
Sbjct:   493 DIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEI 552

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+LK      A++I+ FCKGK+S F
Sbjct:   553 CACIRLKSGETTTAEEIKAFCKGKISHF 580

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|E9PF16 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 46/88 (52%), Positives = 61/88 (69%)

Query:   398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
             D   + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+
Sbjct:   450 DVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEI 509

Query:   458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                I+LK+  +   ++I+ FCKGK+S F
Sbjct:   510 CACIRLKDGEETTVEEIKAFCKGKISHF 537

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	485
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	5e-54
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-50
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-39
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	5e-39
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	4e-36
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-35
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-34
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-33
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	7e-33
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-30
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-30
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	9e-29
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-28
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-28
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	7e-28
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-28
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	3e-27
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	9e-27
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-26
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	5e-26
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-25
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-25
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-25
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-25
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-25
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-24
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-24
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-23
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-23
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-22
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-22
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-22
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	5e-22
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	5e-22
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	5e-22
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	6e-22
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-21
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	8e-21
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	9e-21
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-20
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-20
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-20
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-20
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-20
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-20
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-19
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-19
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	5e-19
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-19
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-18
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-18
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	5e-18
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-18
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-18
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	7e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	8e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	9e-18
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-17
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-17
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-17
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-17
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-17
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-17
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	6e-17
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	8e-17
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	8e-17
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	9e-17
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	9e-17
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-16
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-16
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-16
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-16
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	5e-16
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	6e-16
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-16
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	8e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	8e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-15
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-15
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	2e-15
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-15
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-15
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-15
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-15
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	3e-15
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	3e-15
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	4e-15
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-15
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	5e-15
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	5e-15
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-15
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-15
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	7e-15
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-14
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-14
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-14
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	3e-14
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-14
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-14
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	7e-14
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	8e-14
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	1e-13
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-13
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-13
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-13
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-13
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-13
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	3e-13
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-13
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-13
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-13
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	4e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-13
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	4e-13
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	4e-13
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-13
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	6e-13
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-13
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	8e-13
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-12
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-12
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-12
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-12
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	5e-12
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	5e-12
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	6e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	6e-12
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-11
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-11
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-11
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-11
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-11
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-11
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	3e-11
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	3e-11
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	3e-11
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	6e-11
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-11
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	8e-11
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-10
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-10
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-10
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-10
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-10
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-10
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	5e-10
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	6e-10
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	8e-10
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-09
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	1e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-09
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-09
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-09
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-09
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-09
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-09
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	5e-09
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	7e-09
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	8e-09
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	9e-09
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-08
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-08
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-08
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-08
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-08
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-08
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	4e-08
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	5e-08
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	6e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	6e-08
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	7e-08
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	9e-08
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-07
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-07
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-07
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-07
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-07
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-07
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-07
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-07
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-07
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	4e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	4e-07
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-07
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-07
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-07
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	4e-07
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-07
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	6e-07
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	6e-07
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	7e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	7e-07
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	8e-07
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	9e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-06
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-06
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-06
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	3e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	4e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-06
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-06
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	5e-06
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	7e-06
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	7e-06
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	8e-06
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	8e-06
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-05
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-05
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-05
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-05
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-05
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-05
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	4e-05
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	5e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	8e-05
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	9e-05
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-04
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	2e-04
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-04
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	0.001
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	0.002
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.003

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  184 bits (470), Expect = 5e-54
 Identities = 67/161 (41%), Positives = 80/161 (49%), Gaps = 37/161 (22%)

Query: 21  AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
            K+VD +   VP G  GE+ +RG+  M GY+ D + T E I  D WL TG          
Sbjct: 184 VKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG---------- 233

Query: 81  AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
                                      D   + EDGY ++VGRIKDMIIRGGENIYP EI
Sbjct: 234 ---------------------------DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEI 266

Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           EE + THP V EA   GVPDER+GE V   + LK  A L  
Sbjct: 267 EEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTE 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  179 bits (457), Expect = 3e-50
 Identities = 67/165 (40%), Positives = 82/165 (49%), Gaps = 38/165 (23%)

Query: 20  QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           + K+VD      VP G  GEL  RG+  M GYW D +KT E I  D W+ TG        
Sbjct: 381 EVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG-------- 432

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D  V+ E+GY  +VGRIKDMIIRGGENIYP+
Sbjct: 433 -----------------------------DLAVMDEEGYVNIVGRIKDMIIRGGENIYPR 463

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           EIEEF+ THP + +    GVPDE+ GEEV   I L+  A L   +
Sbjct: 464 EIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEED 508

Length = 559

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  148 bits (377), Expect = 4e-39
 Identities = 48/85 (56%), Positives = 63/85 (74%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
           V+ E+GY  +VGRIKDMIIRGGENIYP+EIEEF+ THP + +    GVPDE+ GEEV   
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495

Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
           I L+  A L  +D+R FC+GK++ +
Sbjct: 496 IILRPGATLTEEDVRDFCRGKIAHY 520

Length = 559

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  144 bits (365), Expect = 5e-39
 Identities = 49/88 (55%), Positives = 63/88 (71%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   + EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA   GVPDER+GE V
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
              + LK  A L  +++  FC+G++++F
Sbjct: 294 AAFVVLKPGATLTEEELIAFCRGRLARF 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  138 bits (351), Expect = 4e-36
 Identities = 62/164 (37%), Positives = 77/164 (46%), Gaps = 38/164 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + K+VD     +P G  GEL++RG   M GYW   ++T E +  D WLRTG         
Sbjct: 305 EVKIVDDEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVL-TDGWLRTG--------- 354

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   + EDGY  +V R KDMII GG N+YP+E
Sbjct: 355 ----------------------------DIGYMDEDGYFYIVDRKKDMIIVGGFNVYPRE 386

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           IEE + +HP VLEA   GVPD   GE V   + LKE A L   E
Sbjct: 387 IEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEE 430

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  138 bits (349), Expect = 2e-35
 Identities = 58/165 (35%), Positives = 73/165 (44%), Gaps = 37/165 (22%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + ++VD +   V  G  GE+ +RG   M GYW   + T E    D WLRTG         
Sbjct: 356 EVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG--------- 406

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   + EDGY  +VGR+KD+II GGENIYP+E
Sbjct: 407 ----------------------------DLGYVDEDGYLYIVGRLKDLIISGGENIYPEE 438

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED 184
           IE  +  HP V EA   GVPDER GE V   + LK         +
Sbjct: 439 IEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAE 483

Length = 534

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  132 bits (334), Expect = 1e-34
 Identities = 53/148 (35%), Positives = 69/148 (46%), Gaps = 38/148 (25%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + ++VD + R +P G  GE+++RG   M GYW   + T E +  D WL TG         
Sbjct: 179 EVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHTG--------- 228

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                              +G+      D     EDGY  +V R KDMII GGENIYP E
Sbjct: 229 ------------------DLGYL-----D-----EDGYLYIVDRKKDMIISGGENIYPAE 260

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           +E  +  HP V +    GVPDE  GE V
Sbjct: 261 VENVLLAHPAVADVAVIGVPDEEWGEAV 288

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  131 bits (333), Expect = 3e-33
 Identities = 61/184 (33%), Positives = 79/184 (42%), Gaps = 43/184 (23%)

Query: 4   MNPTDLQFSTLSSSS------FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKT 57
            N  D    T++ +        + K+V+     VP G  GELL+RG   M GY++D + T
Sbjct: 325 FNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEAT 384

Query: 58  KETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGY 117
              I  D WL TG                                     D   L E+GY
Sbjct: 385 AAAIDADGWLHTG-------------------------------------DLGRLDEEGY 407

Query: 118 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
             +V R KDM I GG N+YP E+EE +  HP V EA   GVPDER+GE     + LK  A
Sbjct: 408 LYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA 467

Query: 178 KLNA 181
           +L  
Sbjct: 468 ELTE 471

Length = 513

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  131 bits (330), Expect = 7e-33
 Identities = 61/155 (39%), Positives = 79/155 (50%), Gaps = 37/155 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + KVVD +   VP G  GEL  RG+  M GYW + + T E+I  D W+ TG         
Sbjct: 383 EVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG--------- 433

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   + E GY ++VGR KDMIIRGGENIYP+E
Sbjct: 434 ----------------------------DLATMDEQGYVRIVGRSKDMIIRGGENIYPRE 465

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 174
           IEEF+ THP V +   +GVPDE+ GEE+   ++L 
Sbjct: 466 IEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLH 500

Length = 558

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  123 bits (312), Expect = 2e-30
 Identities = 58/166 (34%), Positives = 77/166 (46%), Gaps = 40/166 (24%)

Query: 20  QAKVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           +A++VD +   +P   G  GE+++RG   M GYW   + T ETI    WL TG       
Sbjct: 349 EARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGG-WLHTG------- 400

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D   + EDGY  +  RIKD+II GGENIYP
Sbjct: 401 ------------------------------DVGYIDEDGYLYITDRIKDVIISGGENIYP 430

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           +E+E+ +  HP V E    GVPDE+ GE     + LK  A L+A E
Sbjct: 431 RELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKE 476

Length = 521

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  120 bits (303), Expect = 2e-30
 Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 38/172 (22%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           +  ++D + R +P G  GE++IRG     GY  + +  +E    D W RTG         
Sbjct: 181 EVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREA-FRDGWFRTG--------- 230

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   L EDGY  + GRIK++I RGGE I P+E
Sbjct: 231 ----------------------------DLGYLDEDGYLFLTGRIKELINRGGEKISPRE 262

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDY 191
           +EE +  HP V EA  +GVPDE  GEEV  ++ L+ ++K+   E +  +   
Sbjct: 263 VEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFARKR 314

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  118 bits (297), Expect = 9e-29
 Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 37/162 (22%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + ++VD     VP G  GELL RG   + GY+   +        D + RTG         
Sbjct: 319 EIRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTG--------- 369

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   +  DGY +VVGRIKD I RGGE I P+E
Sbjct: 370 ----------------------------DLVRIDADGYYRVVGRIKDQINRGGEKISPEE 401

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           IE  + +HP V +A   G+PDE +GE +   +  +  A    
Sbjct: 402 IENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTL 443

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  116 bits (293), Expect = 2e-28
 Identities = 51/146 (34%), Positives = 63/146 (43%), Gaps = 38/146 (26%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           ++VD +   VP G  GEL +RG    LGY  D     E    D W RTG           
Sbjct: 274 RIVDDDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNTEAFTDDGWFRTG----------- 321

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                                     D   L  DGY ++ GR KD+IIRGGENI  +EIE
Sbjct: 322 --------------------------DLGRLDADGYLRITGRKKDIIIRGGENISAREIE 355

Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
           + +  HP V E     +PDER+GE V
Sbjct: 356 DLLLRHPAVAEVAVVAMPDERLGERV 381

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  114 bits (287), Expect = 3e-28
 Identities = 53/163 (32%), Positives = 70/163 (42%), Gaps = 37/163 (22%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
            + +VVD   + +P G  GEL++RG   M GYW +  +T      D W RTG        
Sbjct: 178 VEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG-------- 229

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D   L E+GY  + GR KD+I  GGEN+YP 
Sbjct: 230 -----------------------------DLGYLDEEGYLYITGRSKDLIKVGGENVYPA 260

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           E+E  +  HP V EA   GVPDE  GE +   + L+  A   A
Sbjct: 261 EVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALA 303

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  114 bits (289), Expect = 7e-28
 Identities = 45/166 (27%), Positives = 62/166 (37%), Gaps = 41/166 (24%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIR---GHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
            + ++VD + R VP G  GEL++R         GY+   + T +    + W  TG     
Sbjct: 254 VEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTG----- 307

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
                                           D+    EDG+   V R KD I R GENI
Sbjct: 308 --------------------------------DRGRRDEDGFLYFVDRKKDAIRRRGENI 335

Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
              E+E  I  HP V EA    VP E   +EV   + L+    L+ 
Sbjct: 336 SSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDP 381

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  114 bits (288), Expect = 8e-28
 Identities = 42/139 (30%), Positives = 50/139 (35%), Gaps = 39/139 (28%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWL--RTGRYKKTS 76
            + KV+D     VP G  GEL IRG     GY  D + T E    D W   RTG      
Sbjct: 311 VEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTG------ 364

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                          D     EDGY +++GR  D +   GE I 
Sbjct: 365 -------------------------------DLGRWDEDGYLEILGRKDDQVKIRGERIE 393

Query: 137 PKEIEEFIQTHPNVLEAYA 155
           P EIE  +  HP V EA  
Sbjct: 394 PGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  114 bits (287), Expect = 3e-27
 Identities = 43/88 (48%), Positives = 61/88 (69%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   + E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V +   +GVPDE+ GEE+
Sbjct: 434 DLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI 493

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
              ++L      + +++R FCK +++ F
Sbjct: 494 VAWVRLHPGHAASEEELREFCKARIAHF 521

Length = 558

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  112 bits (282), Expect = 9e-27
 Identities = 40/82 (48%), Positives = 54/82 (65%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  +V R KDMII GG N+YP+EIEE + +HP VLEA   GVPD   GE V   + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           KE A L  +++  FC+ +++ +
Sbjct: 421 KEGASLTEEELIAFCRERLAAY 442

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  109 bits (276), Expect = 1e-26
 Identities = 37/82 (45%), Positives = 52/82 (63%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  +V R KDMII GGENIYP E+E  +  HP V +    GVPDE  GE V   + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           +  A L+A+++  FC+ +++ +
Sbjct: 295 RPGATLDAEELIAFCRERLAGY 316

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  110 bits (277), Expect = 5e-26
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   + EDGY  +VGR+KD+II GGENIYP+EIE  +  HP V EA   GVPDER GE V
Sbjct: 407 DLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERV 466

Query: 458 GISIKLKE--NAKLNADDIRTFCKGKVSKF 485
              + LK   +A+L A+++R F + +++ +
Sbjct: 467 VAVVVLKPGGDAELTAEELRAFLRKRLALY 496

Length = 534

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (274), Expect = 1e-25
 Identities = 40/85 (47%), Positives = 56/85 (65%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
            + EDGY  +  RIKD+II GGENIYP+E+E+ +  HP V E    GVPDE+ GE     
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463

Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
           + LK  A L+A ++R F +G+++KF
Sbjct: 464 VVLKPGATLDAKELRAFLRGRLAKF 488

Length = 521

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  106 bits (268), Expect = 1e-25
 Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 13/117 (11%)

Query: 375 KKYLREEENITVPDSAGRSIFEK------DQFVLREDGYGQVVGRIKDMIIRGGENIYPK 428
             YL   E       A R  F        D   L EDGY  + GRIK++I RGGE I P+
Sbjct: 209 AGYLNNPE-------ANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261

Query: 429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
           E+EE +  HP V EA  +GVPDE  GEEV  ++ L+ ++K+  +++R F + +++ F
Sbjct: 262 EVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFARKRLAAF 318

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (274), Expect = 1e-25
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 37/164 (22%)

Query: 18  SFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           S   KV+D +   +P G  GEL ++G   M GYW+  + T E +  D WL+TG       
Sbjct: 386 STLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG------- 438

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D  +++EDGY ++V R KDMI+  G N+YP
Sbjct: 439 ------------------------------DIALIQEDGYMRIVDRKKDMILVSGFNVYP 468

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
            E+E+ +   P VL+  A GVPDE+ GE + + + +K    L  
Sbjct: 469 NELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTK 512

Length = 562

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  107 bits (270), Expect = 4e-25
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 377 YLREEENITVPDSAG--RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 434
           Y   E N       G  R+    D   +  DGY +VVGRIKD I RGGE I P+EIE  +
Sbjct: 350 YRAPEHNARAFTDDGFYRT---GDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLL 406

Query: 435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VSKF 485
            +HP V +A   G+PDE +GE +   +  +  A     ++R F + + ++KF
Sbjct: 407 LSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQGLAKF 458

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  106 bits (267), Expect = 5e-25
 Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 39/164 (23%)

Query: 20  QAKVVDHNNR-IVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           + ++VD +    +  G  GE+ +RG      YW   + T E    D W +TG        
Sbjct: 268 EVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTG-------- 319

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYP 137
                                        D  V+ EDGY +++GR  D II+ GG  +  
Sbjct: 320 -----------------------------DVGVVDEDGYYRILGRKSDDIIKSGGYKVSA 350

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
            EIEE +  HP V E    GVPD   GE V   +  +  A L  
Sbjct: 351 LEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTL 394

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  105 bits (265), Expect = 2e-24
 Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 38/164 (23%)

Query: 19  FQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
            +AK+VD +  + +     GEL ++G   M GY  + + TKETI  D WL TG       
Sbjct: 325 VEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTG------- 377

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                IG+F     D     EDG   +V R K++I   G  + P
Sbjct: 378 --------------------DIGYF-----D-----EDGNFYIVDRKKELIKYKGYQVPP 407

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
            E+E  +  HP V +A   G+PDE  GE     + LK  +KL  
Sbjct: 408 AELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTE 451

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  104 bits (261), Expect = 4e-24
 Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 40/156 (25%)

Query: 14  LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYK 73
           + + + Q +VVD      P G PGELL+RG     GYW   Q T      D W RTG   
Sbjct: 310 IPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTG--- 366

Query: 74  KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLRE-DGYGQVVGRIKDMIIRGG 132
                                                  R+ DG+  VV R KDM I GG
Sbjct: 367 -----------------------------------DIARRDADGFFWVVDRKKDMFISGG 391

Query: 133 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 168
           EN+YP EIE  +  HP + E    G+ D + G EVG
Sbjct: 392 ENVYPAEIEAVLADHPGIRECAVVGMADAQWG-EVG 426

Length = 488

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  102 bits (257), Expect = 2e-23
 Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 38/164 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           +  ++D + R V  G  GE+ +RG   M GYW   ++T E    D WL TG         
Sbjct: 349 RVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD-------- 399

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
             +A                        D     EDG+  +V R KDMI+ GG N++P+E
Sbjct: 400 --VARE----------------------D-----EDGFYYIVDRKKDMIVTGGFNVFPRE 430

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           +E+ +  HP V +    GVPDE+ GE V   + L+  A ++A E
Sbjct: 431 VEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAE 474

Length = 524

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  102 bits (257), Expect = 2e-23
 Identities = 50/143 (34%), Positives = 65/143 (45%), Gaps = 37/143 (25%)

Query: 25  DHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI 84
           D +   +P G PGE+ IRG   M GYW    +T + +  D + RTG              
Sbjct: 395 DDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG-------------- 440

Query: 85  RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 144
                         +G           + E GY ++V R KDMI+  G N+YP EIEE +
Sbjct: 441 -------------DVGV----------MDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV 477

Query: 145 QTHPNVLEAYAYGVPDERMGEEV 167
            +HP VLE  A GVPDE  GE V
Sbjct: 478 ASHPGVLEVAAVGVPDEHSGEAV 500

Length = 557

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (251), Expect = 1e-22
 Identities = 37/85 (43%), Positives = 53/85 (62%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
            L E+GY  +V R KDM I GG N+YP E+EE +  HP V EA   GVPDER+GE     
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460

Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
           + LK  A+L  +++  +C+  ++K+
Sbjct: 461 VVLKPGAELTEEELIAYCREHLAKY 485

Length = 513

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (252), Expect = 1e-22
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 40/162 (24%)

Query: 22  KVVDHNN--RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           ++VD  +    +P G  GELL+RG     GYW   ++T ++     W RTG         
Sbjct: 401 RIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDG-WFRTG--------- 450

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D  V+ EDG+ ++V RIK++II GG N+YP E
Sbjct: 451 ----------------------------DVVVMEEDGFIRIVDRIKELIITGGFNVYPAE 482

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           +EE ++ HP V +A   G+P E   EEV  ++ L+  A L+ 
Sbjct: 483 VEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDP 524

Length = 573

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 97.7 bits (244), Expect = 2e-22
 Identities = 47/150 (31%), Positives = 58/150 (38%), Gaps = 42/150 (28%)

Query: 23  VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP-----DRWLRTGRYKKTSF 77
           VVD +      G  GEL+ RG   M GYW D + T E + P     +  L TG       
Sbjct: 184 VVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTG------- 236

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D   + E+GY   VGR  DMI   G  + P
Sbjct: 237 ------------------------------DLVRMDEEGYLYFVGRKDDMIKTRGYRVSP 266

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
            EIEE I  HP V EA   GVPD  +G+ +
Sbjct: 267 TEIEEVICAHPLVAEAAVIGVPDPLLGQAI 296

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 98.4 bits (245), Expect = 5e-22
 Identities = 52/158 (32%), Positives = 66/158 (41%), Gaps = 38/158 (24%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           +++D N   V  G  GELLIRG   M  YW     T+ETI  D WL TG           
Sbjct: 329 ELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTG----------- 376

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                                     D   + EDG+  +VGR K+MII GGENIYP E+E
Sbjct: 377 --------------------------DLARVDEDGFVYIVGRKKEMIISGGENIYPLEVE 410

Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
           + I    +V E    G    + GE     I  K ++ L
Sbjct: 411 QVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVL 448

Length = 496

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 97.6 bits (244), Expect = 5e-22
 Identities = 50/163 (30%), Positives = 65/163 (39%), Gaps = 46/163 (28%)

Query: 10  QFSTLSSSSFQAKVVDHNNRIVPF-------GTPGELLIRGHCNMLGYWEDEQKTKETIG 62
           Q +TL    F AK+     + +P           GE+L+RG    LGY      T     
Sbjct: 228 QVATLKPDDFLAKL-GSVGKPLPGRELRIVNPQDGEILVRGPSLFLGYLPQGGLTPPLDE 286

Query: 63  PDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVG 122
            D W  TG                            +G+      D      +GY  V+G
Sbjct: 287 -DGWFHTG---------------------------DLGYL-----D-----AEGYLYVLG 308

Query: 123 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
           R  D+II GGENIYP+EIE  +  HP V EA   GVPD+  G+
Sbjct: 309 RRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQ 351

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 98.5 bits (246), Expect = 5e-22
 Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 38/164 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + +VVD +   V  G  GE++ R    MLGYW+D +KT E                    
Sbjct: 351 ETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAE-------------------- 390

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
            A                + G+F+S   D  V+ E+GY  VV R KDMI  GGEN+  +E
Sbjct: 391 -AF---------------RGGWFHS--GDLGVMDEEGYITVVDRKKDMIKTGGENVASRE 432

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           +EE + THP V E    G+PD +  E V   +  K  A +   E
Sbjct: 433 VEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDE 476

Length = 523

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 98.4 bits (245), Expect = 6e-22
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 42/187 (22%)

Query: 4   MNPTDLQFST----LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
           +NP  L+       L   S  A + D    ++  G  GEL I+G   M GYW+  ++T +
Sbjct: 372 INPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAK 431

Query: 60  TIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQ 119
            +  D WL TG   +                + +Q     GF Y                
Sbjct: 432 VMDADGWLHTGDIAR----------------MDEQ-----GFVY---------------- 454

Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
           +V R KDMI+  G N+YP EIE+ I   P VLE  A GVPDE+ GE V + I +K++  L
Sbjct: 455 IVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-VKKDPAL 513

Query: 180 NAYEDKS 186
            A + K+
Sbjct: 514 TAEDVKA 520

Length = 560

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 95.7 bits (239), Expect = 3e-21
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
            L  DGY ++ GR KD+IIRGGENI  +EIE+ +  HP V E     +PDER+GE V   
Sbjct: 325 RLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAV 384

Query: 461 IKLKENAKLNADDIRTFCKGK-VSK 484
           +     A L   ++      + ++K
Sbjct: 385 VVPAPGASLTLAELTEHLAAQGLAK 409

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 95.3 bits (237), Expect = 8e-21
 Identities = 49/146 (33%), Positives = 66/146 (45%), Gaps = 37/146 (25%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           KV+D +   +P G  GEL I+G   M GYW+  + T E +  + W +TG           
Sbjct: 398 KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG----------- 446

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                                     D  V+  DG+ ++V R KD+II  G N+YP EIE
Sbjct: 447 --------------------------DIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIE 480

Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
           + +  HP V    A GVPDER GE V
Sbjct: 481 DVVMAHPKVANCAAIGVPDERSGEAV 506

Length = 562

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 94.2 bits (235), Expect = 9e-21
 Identities = 32/88 (36%), Positives = 44/88 (50%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D+    EDG+   V R KD I R GENI   E+E  I  HP V EA    VP E   +EV
Sbjct: 308 DRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEV 367

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
              + L+    L+ + +  FC+ ++  F
Sbjct: 368 KAVVVLRPGETLDPEALLEFCRDRLPYF 395

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 92.7 bits (231), Expect = 1e-20
 Identities = 33/82 (40%), Positives = 47/82 (57%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   L E+GY  + GR KD+I  GGEN+YP E+E  +  HP V EA   GVPDE  GE +
Sbjct: 230 DLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERI 289

Query: 458 GISIKLKENAKLNADDIRTFCK 479
              + L+  A   A++++   +
Sbjct: 290 VAFVVLRPGADALAEELKAHLR 311

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 401 VLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 459
           V+ EDGY +++GR  D II+ GG  +   EIEE +  HP V E    GVPD   GE V  
Sbjct: 323 VVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVA 382

Query: 460 SIKLKENAKLNADDIRTFCKGKVSKF 485
            +  +  A L   ++R + + K++ +
Sbjct: 383 VVVPEAGAALTLAELRAWAREKLAPY 408

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 92.6 bits (231), Expect = 2e-20
 Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 377 YLREEENITVPDSAGRSIFE-KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ 435
           YL +       D  G   F   D   L  +GY  V+GR  D+II GGENIYP+EIE  + 
Sbjct: 274 YLPQGGLTPPLDEDG--WFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLL 331

Query: 436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
            HP V EA   GVPD+  G+     +    +  ++ ++++ F   K++K+
Sbjct: 332 QHPAVEEAAVVGVPDDEWGQRPVAFVVP-NDDPVSVEELQAFLADKLAKY 380

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 93.5 bits (233), Expect = 2e-20
 Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 38/153 (24%)

Query: 14  LSSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRY 72
               + +AK+VD      +P   PGEL +RG   M GY  + + T ETI  D WL TG  
Sbjct: 334 RLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTG-- 391

Query: 73  KKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGG 132
                                     +G+F     D     EDGY  +V R+K++I   G
Sbjct: 392 -------------------------DLGYF-----D-----EDGYLFIVDRLKELIKYKG 416

Query: 133 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
             + P E+E  + +HP + +A     PDE  GE
Sbjct: 417 FQVAPAELEALLLSHPEIADAAVIPYPDEEAGE 449

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 56/153 (36%), Positives = 72/153 (47%), Gaps = 38/153 (24%)

Query: 17  SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
            S + K+VD +   VP G PGEL ++G   MLGYW+  + T E I  D WL TG      
Sbjct: 385 PSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATG------ 437

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                          D  V+ E+G+ ++V R KDMI+  G N+Y
Sbjct: 438 -------------------------------DIAVMDEEGFLRIVDRKKDMILVSGFNVY 466

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 169
           P EIE+ +  HP VLE  A GVP E  GE V I
Sbjct: 467 PNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKI 499

Length = 560

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 92.7 bits (231), Expect = 5e-20
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 41/170 (24%)

Query: 17  SSFQAKVVDHN-NRIVPFG--TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYK 73
              +  VVD    + VP    T GE+++RG+  M GY+++ + T+E      W  +G   
Sbjct: 351 GLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFA-GGWFHSG--- 406

Query: 74  KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
                                             D  V+  DGY ++  R KD+II GGE
Sbjct: 407 ----------------------------------DLAVVHPDGYIEIKDRSKDIIISGGE 432

Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           NI   E+E  +  HP VLEA     PDE+ GE     + LK  A +   E
Sbjct: 433 NISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEE 482

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 44/192 (22%)

Query: 4   MNPTD---LQFSTLSSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE 59
            NP D    Q   +      A+V+D      +P G  GE+++RG     GYW   + T E
Sbjct: 242 FNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAE 301

Query: 60  T---IGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDG 116
           +   +   R+ RTG                            +G+          + E+G
Sbjct: 302 SFIELDGKRFFRTG---------------------------DLGY----------IDEEG 324

Query: 117 YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
           Y   + R+K MI   G  ++P E+E  +  HP VLE    G PD R GE V   + LK +
Sbjct: 325 YFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPD 384

Query: 177 AKLNAYEDKSIS 188
            +    E+  I 
Sbjct: 385 YRGKVTEEDIIE 396

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 41/165 (24%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRG---HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
           F+A+VVD +++ +P G PGELL+R         GY+   +KT E    + W  TG     
Sbjct: 352 FEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA-WRNLWFHTG----- 405

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
                                           D+ V   DG+ + V RIKD I R GENI
Sbjct: 406 --------------------------------DRVVRDADGWFRFVDRIKDAIRRRGENI 433

Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
              E+E+ + +HP V  A  + VP E   +EV  ++ L++   L 
Sbjct: 434 SSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALE 478

Length = 542

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 89.7 bits (223), Expect = 5e-19
 Identities = 34/88 (38%), Positives = 58/88 (65%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A   G+P E   EEV
Sbjct: 451 DVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEV 510

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
             ++ L+  A L+ + +R +C+  ++++
Sbjct: 511 VAAVVLEPGAALDPEGLRAYCREHLTRY 538

Length = 573

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 88.8 bits (221), Expect = 7e-19
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDG   V GR  DMI+ GGEN++P E+E+ +  HP+V+EA   GV DE  G+ +   +  
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
              A L+ D I+ + +  ++++
Sbjct: 499 APGAALDEDAIKDYVRDNLARY 520

Length = 549

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 7/99 (7%)

Query: 387 PDSAGRSIFEKDQF------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 440
           PD   + +     F      V+ E GY ++V R KDMI+  G N+YP EIEE + +HP V
Sbjct: 424 PDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGV 483

Query: 441 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK 479
           LE  A GVPDE  GE V + + +K++  L  +D++ FCK
Sbjct: 484 LEVAAVGVPDEHSGEAVKLFV-VKKDPALTEEDVKAFCK 521

Length = 557

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 31/82 (37%), Positives = 45/82 (54%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDG+  +VGR K+MII GGENIYP E+E+ I    +V E    G    + GE     I  
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           K ++ L   D+   C+  ++K+
Sbjct: 443 KSSSVLIEKDVIEHCRLFLAKY 464

Length = 496

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 86.0 bits (214), Expect = 5e-18
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 40/127 (31%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+L+RG   M GY+++ + T E +  D WL TG                          
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTG-------------------------- 316

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYA 155
                      D   L EDG+  +  R KD+I+  GG+NI P+ IE  ++  P + +A  
Sbjct: 317 -----------DIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVV 365

Query: 156 YGVPDER 162
            G  D+R
Sbjct: 366 VG--DDR 370

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 86.1 bits (214), Expect = 6e-18
 Identities = 33/85 (38%), Positives = 49/85 (57%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
           V+ E+GY  VV R KDMI  GGEN+  +E+EE + THP V E    G+PD +  E V   
Sbjct: 404 VMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAV 463

Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
           +  K  A +  D++   C+ +++ F
Sbjct: 464 VVPKAGATVTEDELIAHCRARLAGF 488

Length = 523

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 86.1 bits (213), Expect = 6e-18
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 405 DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 462
           D  G V   GR+ DMII GGENI+P E+E  +   P V E    G+PDER G+ V   + 
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446

Query: 463 LKENAKLNADDIRTFC 478
            +E   L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.0 bits (213), Expect = 7e-18
 Identities = 30/88 (34%), Positives = 52/88 (59%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  +++EDGY ++V R KDMI+  G N+YP E+E+ +   P VL+  A GVPDE+ GE +
Sbjct: 439 DIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAI 498

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
            + + +K    L  + +    +  ++ +
Sbjct: 499 KVFVVVKPGETLTKEQVMEHMRANLTGY 526

Length = 562

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 85.4 bits (212), Expect = 8e-18
 Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 39/148 (26%)

Query: 19  FQAKV-VDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           F  ++ ++ +  +VP    GE++++G     GY   E  T+ET   D W +TG       
Sbjct: 314 FPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTG------- 365

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                IG+          L E+G+  V+ R  D+II GGENIYP
Sbjct: 366 --------------------DIGY----------LDEEGFLYVLDRRSDLIISGGENIYP 395

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGE 165
            EIEE + +HP V EA   GVPD++ G+
Sbjct: 396 AEIEEVLLSHPGVAEAGVVGVPDDKWGQ 423

Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 85.4 bits (212), Expect = 9e-18
 Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 375 KKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 434
           K Y +  E  T    AG      D  V+  DGY ++  R KD+II GGENI   E+E  +
Sbjct: 385 KGYYKNPEA-TEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVL 443

Query: 435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
             HP VLEA     PDE+ GE     + LK  A +  +++  +C+ K++ F
Sbjct: 444 YKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEELIEYCREKLAHF 494

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 84.2 bits (209), Expect = 3e-17
 Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 49/163 (30%)

Query: 17  SSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKET------IGPDRWLRT 69
              + ++VD    R +P G  GE+ +RG     GYW   + T ET           WLRT
Sbjct: 362 PGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRT 421

Query: 70  GRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII 129
           G                            +GF +           DG   V GR+KD+II
Sbjct: 422 G---------------------------DLGFLH-----------DGELYVTGRLKDLII 443

Query: 130 RGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 169
             G N YP++IE  ++     L    A A+ V  +   E + +
Sbjct: 444 IRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 48/146 (32%), Positives = 63/146 (43%), Gaps = 38/146 (26%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
            A+VVD N   VP G  GE++ R    M GYW + + T E                    
Sbjct: 355 AARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG---------------- 398

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                               G+F+S   D     E+GY  VV R KDMII GGENIY  E
Sbjct: 399 --------------------GWFHS--GDLVRQDEEGYVWVVDRKKDMIISGGENIYCAE 436

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
           +E  + +HP+++E    G  DE+ GE
Sbjct: 437 VENVLASHPDIVEVAVIGRADEKWGE 462

Length = 542

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 83.9 bits (208), Expect = 3e-17
 Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 40/144 (27%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI-GPDRWLRTGRYKKTSF 77
           ++ K+VD +   V  G  GEL +RG  +  GYW   +KT+ET  G   W RTG       
Sbjct: 339 YEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETFVG--EWTRTG------- 389

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D++   EDGY    GR  DM+   G  + P
Sbjct: 390 ------------------------------DKYYRDEDGYYWYCGRSDDMLKVSGIWVSP 419

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDE 161
            E+E+ +  HP VLEA   G  DE
Sbjct: 420 FEVEDALLQHPAVLEAAVVGAEDE 443

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 83.5 bits (207), Expect = 4e-17
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDG+  +V R KDMI+ GG N++P+E+E+ +  HP V +    GVPDE+ GE V   + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464

Query: 464 KENAKLNADDIRTFCK 479
           +  A ++A +++   K
Sbjct: 465 RPGAAVDAAELQAHVK 480

Length = 524

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 46/144 (31%), Positives = 63/144 (43%), Gaps = 38/144 (26%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           ++A++VD + R VP GT G+L +RG     GYW   +KT+ T+  D WLRTG        
Sbjct: 269 YEARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTG-------- 319

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D+F    DG+ +  GR  DMI   G+ + P 
Sbjct: 320 -----------------------------DRFSRDADGWYRYQGRADDMIKVSGQWVSPL 350

Query: 139 EIEEFIQTHPNVLEAYAYGVPDER 162
           E+E  +  HP V EA    VPDE 
Sbjct: 351 EVEAALGEHPAVAEAAVVAVPDED 374

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 83.0 bits (206), Expect = 5e-17
 Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 40/167 (23%)

Query: 19  FQAKVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
            + ++VD     +P    T GEL++RG      Y++D +KT+E +  D W RTG      
Sbjct: 350 VELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE-LTRDGWFRTG------ 402

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                          D  V+ EDGY Q+  R KD+I  GGE I 
Sbjct: 403 -------------------------------DVAVIDEDGYIQITDRAKDVIKSGGEWIS 431

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
             E+E  +  HP V EA   GVP E+ GE     + LK  AK+   E
Sbjct: 432 SVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEE 478

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 83.0 bits (206), Expect = 6e-17
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L EDGY  +  R  DMII GG NIYP+EIE  + THP V +   +GVPDE MGE V   +
Sbjct: 379 LDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVV 438

Query: 462 KLKENAKLN---ADDIRTFCKGKVSKF 485
           +  + A      A ++  + +G+++ +
Sbjct: 439 QPADGADAGDALAAELIAWLRGRLAHY 465

Length = 502

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L   G+  + GR  DM I GG N+YP+EIEE + THP V E    GVPD   G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462

Query: 462 -KLKENAKLNADDIRTFCKGKVSKF 485
              ++ A ++  ++  +  GKV+++
Sbjct: 463 CVARDGAPVDEAELLAWLDGKVARY 487

Length = 528

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 82.6 bits (204), Expect = 8e-17
 Identities = 34/84 (40%), Positives = 53/84 (63%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L   G   + GRIK++I RGGE I P+ +E  + +HPNV+EA  +GVPD+  GE V   I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
             +E+A   A+++  FC+ +++ F
Sbjct: 478 VPRESAPPTAEELVQFCRERLAAF 501

Length = 534

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 82.4 bits (203), Expect = 9e-17
 Identities = 34/88 (38%), Positives = 49/88 (55%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   L   G   +VGR  DMII GGEN+YP+ +E  +  HP V +    GVPDER G  +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
              + L   + ++A  +R + K +VS+F
Sbjct: 462 AAFVVLHPGSGVDAAQLRDYLKDRVSRF 489

Length = 516

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 82.3 bits (203), Expect = 9e-17
 Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 38/155 (24%)

Query: 24  VDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMA 83
           +D   +++P G  GEL IRG     GYW   +++ E    DR+L TG             
Sbjct: 381 LDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TG------------- 426

Query: 84  IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF 143
                          IG+          +  DGY  +V R KDMII GG N+YP+ IE+ 
Sbjct: 427 --------------DIGY----------MDTDGYFFLVDRKKDMIISGGFNVYPQMIEQA 462

Query: 144 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
           I  HP V E    G+PD+  GE     +KL+  AK
Sbjct: 463 IYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK 497

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 379 REEENITVPDSAGRSIFEKDQFVLRE-DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH 437
           R +         G   F       R+ DG+  VV R KDM I GGEN+YP EIE  +  H
Sbjct: 349 RPQATARAFTGDG--WFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADH 406

Query: 438 PNVLEAYAYGVPDERMGEEVG-ISIKLKENAKLNADDIRTFCKGKVSKF 485
           P + E    G+ D + G EVG ++I   + A L+ + IR+    +++K+
Sbjct: 407 PGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRSHLSTRLAKY 454

Length = 488

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 81.5 bits (201), Expect = 2e-16
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
            DGY  +V R KDMII GG N+YP+ IE+ I  HP V E    G+PD+  GE     +KL
Sbjct: 433 TDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKL 492

Query: 464 KENAK-LNADDIRTFCKGKVSK 484
           +  AK  + D++R F  GK+ K
Sbjct: 493 RPGAKPFSLDELRAFLAGKLGK 514

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 37/163 (22%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           KVVD   + +P G  GE   RG    +GY ++ + T   +  + W               
Sbjct: 367 KVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGW--------------- 411

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                               +YS   D   + E GY ++ GR KD+I+RGGENI  +E+E
Sbjct: 412 --------------------YYS--GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVE 449

Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED 184
           + +  HP + +A    +PDER+GE     + LK        E+
Sbjct: 450 DILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEE 492

Length = 547

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 80.8 bits (200), Expect = 3e-16
 Identities = 35/84 (41%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L E+G+  V+ R  D+II GGENIYP EIEE + +HP V EA   GVPD++ G +V ++ 
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
            + ++ ++  +++R FC+ K++K+
Sbjct: 429 -VVKSGEVTEEELRHFCEEKLAKY 451

Length = 483

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 80.4 bits (199), Expect = 5e-16
 Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 57/171 (33%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+L+RG   M GY+++ + T E    D W RTG                          
Sbjct: 421 GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG-------------------------- 454

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYA 155
                      D   L EDGY  + GR K++I    G+NI P+ IE  +   P + +   
Sbjct: 455 -----------DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICV 503

Query: 156 YG----------VPDERMGEEVGISIKLK---------ENAKLNAYEDKSI 187
            G          VPD    E+   S+             + KL       +
Sbjct: 504 VGDDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRV 554

Length = 613

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 80.0 bits (198), Expect = 6e-16
 Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 37/144 (25%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
            V D +   +P G  G L+ RG     GY+                ++ ++  ++F    
Sbjct: 366 WVADADGNPLPQGEVGRLMTRGPYTFRGYY----------------KSPQHNASAF---- 405

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                             GF+ S   D   +  DGY  VVGR KD I RGGE I  +EIE
Sbjct: 406 ---------------DANGFYCS--GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIE 448

Query: 142 EFIQTHPNVLEAYAYGVPDERMGE 165
             +  HP V+ A    + DE MGE
Sbjct: 449 NLLLRHPAVIHAALVSMEDELMGE 472

Length = 536

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 79.5 bits (196), Expect = 7e-16
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 83  AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE 142
                L    Q   +++   +   SD  V+   G  +++GR+ DMII GGENI+P E+E 
Sbjct: 358 TFTGYLNQ-PQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVER 416

Query: 143 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
            +   P V E    G+PDER G+ V   +  +E   L+A
Sbjct: 417 VLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSA 455

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 79.5 bits (197), Expect = 8e-16
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E GY  +VGR KD+II GG N+YPKE+E  I   P V+E+   GVP    GE V   +  
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           K  A L+   I    KG++++F
Sbjct: 449 KPGAALDEAAILAALKGRLARF 470

Length = 504

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 79.6 bits (197), Expect = 8e-16
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
            DGY  + GR KD+IIRGG NI P  IEE +  HP V  A A G PD   GE     ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516

Query: 464 KENAKLNADDIRTFCKGKVS 483
           K  A     ++  F +  ++
Sbjct: 517 KPGASATEAELLAFARDHIA 536

Length = 632

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 40/165 (24%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + ++ D   R +P G  GE+ + G     GY+ + +   +    D W RTG         
Sbjct: 350 EVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTG--------- 399

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                              +G           L   G+  + GR  DM I GG N+YP+E
Sbjct: 400 ------------------DLGH----------LDARGFLYITGRASDMYISGGSNVYPRE 431

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISI-KLKENAKLNAYE 183
           IEE + THP V E    GVPD   G EVG+++   ++ A ++  E
Sbjct: 432 IEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAVCVARDGAPVDEAE 475

Length = 528

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 52/168 (30%), Positives = 72/168 (42%), Gaps = 38/168 (22%)

Query: 16  SSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
           S+  Q ++V  +   +P G  GE+ +RG   + GY  D   T      D WLRTG     
Sbjct: 360 STGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTG----- 413

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
                                           D   L   G   + GRIK++I RGGE I
Sbjct: 414 --------------------------------DLGSLSAAGDLSIRGRIKELINRGGEKI 441

Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
            P+ +E  + +HPNV+EA  +GVPD+  GE V   I  +E+A   A E
Sbjct: 442 SPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEE 489

Length = 534

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 379 REEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 438
           R EE   V D+ G  +   D   + E G+  +V R KDMI+  G N+YP EIE+ I   P
Sbjct: 425 RPEETAKVMDADGW-LHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMP 483

Query: 439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
            VLE  A GVPDE+ GE V + I +K++  L A+D++   +  ++ +
Sbjct: 484 GVLEVAAVGVPDEKSGEIVKVVI-VKKDPALTAEDVKAHARANLTGY 529

Length = 560

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 30/88 (34%), Positives = 48/88 (54%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D+ V   DG+ + V RIKD I R GENI   E+E+ + +HP V  A  + VP E   +EV
Sbjct: 406 DRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEV 465

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
             ++ L++   L    +   C+ +++ F
Sbjct: 466 MAAVVLRDGTALEPVALVRHCEPRLAYF 493

Length = 542

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 78.4 bits (194), Expect = 2e-15
 Identities = 44/148 (29%), Positives = 60/148 (40%), Gaps = 37/148 (25%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + +++D +   +P G  G +          Y  D +KT     P  W+  G         
Sbjct: 324 EVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVG--------- 374

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                              +G+          L EDGY  +  R  DMII GG NIYP+E
Sbjct: 375 ------------------DVGY----------LDEDGYLYLTDRKSDMIISGGVNIYPQE 406

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           IE  + THP V +   +GVPDE MGE V
Sbjct: 407 IENLLVTHPKVADVAVFGVPDEEMGERV 434

Length = 502

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 78.4 bits (194), Expect = 2e-15
 Identities = 44/149 (29%), Positives = 58/149 (38%), Gaps = 38/149 (25%)

Query: 20  QAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
             +V D      +P G  G + ++G     GYW   +KT E    D +  TG        
Sbjct: 331 SLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITG-------- 382

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D   + E GY  +VGR KD+II GG N+YPK
Sbjct: 383 -----------------------------DLGKIDERGYVHIVGRGKDLIISGGYNVYPK 413

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           E+E  I   P V+E+   GVP    GE V
Sbjct: 414 EVEGEIDELPGVVESAVIGVPHPDFGEGV 442

Length = 504

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 78.7 bits (194), Expect = 2e-15
 Identities = 43/161 (26%), Positives = 60/161 (37%), Gaps = 44/161 (27%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           G +L RG   MLGYW    +T   +  D WL TG                          
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTG-------------------------- 419

Query: 97  QQIGFFYSLVSDQFVLREDGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
             IG+             D  G +  +GR  D I  GGEN+YP+E+E  +  HP V    
Sbjct: 420 -DIGWI------------DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVV 466

Query: 155 AYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFE 195
             GVPD R+ E V   ++L++      + D    +      
Sbjct: 467 VVGVPDSRLTEMVVACVRLRDGWI---WSDNEKENAKKNLT 504

Length = 563

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 40/165 (24%)

Query: 18  SFQAKVVDHNNRIVPFGTPGELLIRG---HCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
            ++A++ D +NR +P G  GE+ I+G         Y+ D + T + +  D WL TG    
Sbjct: 348 CYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTG- 406

Query: 75  TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
               Y                  + GFFY                 V R  +MI RGGEN
Sbjct: 407 ----Y----------------VDEEGFFY----------------FVDRRCNMIKRGGEN 430

Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
           +   E+E  I THP + +    G+ D    E +   + L E   L
Sbjct: 431 VSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL 475

Length = 517

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 41/160 (25%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           K++D N   VP G  G + +       GY +   + K+ I  D  L +G           
Sbjct: 388 KILDENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQII--DGLLSSG----------- 432

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                            +G+F     D     EDG   V GR  DMI+ GGEN++P E+E
Sbjct: 433 ----------------DVGYF-----D-----EDGLLFVDGRDDDMIVSGGENVFPAEVE 466

Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           + +  HP+V+EA   GV DE  G+ +   +     A L+ 
Sbjct: 467 DLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDE 506

Length = 549

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 39/146 (26%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           +VVD +   +P G  G L +RG  N  GY +  Q        D W  TG           
Sbjct: 378 RVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTG----------- 424

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                                     D   +  DGY ++ GR KD+IIRGGENI   EIE
Sbjct: 425 --------------------------DLARIDADGYIRISGRSKDVIIRGGENIPVVEIE 458

Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
             +  HP + +      PDER+GE  
Sbjct: 459 ALLYRHPAIAQVAIVAYPDERLGERA 484

Length = 547

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
            DGY  + GR KD+IIRGG NI P+ IEE +  HP V  A A G PD   GE     ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305

Query: 464 KENAKLNADDIRTFCK 479
           K  A +   ++  F K
Sbjct: 306 KPGATVTEGELLAFVK 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 43/153 (28%), Positives = 58/153 (37%), Gaps = 42/153 (27%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCN----MLGYWEDEQKTKETIGPDRWLRTGRYKK 74
           ++  ++D     +P G  G++ +R          GY +D +KT+ TI  D W  TG    
Sbjct: 258 YRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-WYLTGD--- 313

Query: 75  TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
                   AI+                            EDGY   VGR  D+I   G  
Sbjct: 314 -------RAIK---------------------------DEDGYFWFVGRADDVIKSSGYR 339

Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           I P E+E  +  HP V EA   G PD   GE V
Sbjct: 340 IGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 77.3 bits (191), Expect = 5e-15
 Identities = 44/151 (29%), Positives = 51/151 (33%), Gaps = 43/151 (28%)

Query: 20  QAKVV-----DHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
           + +VV         R       G L I G     GY E        +  D WL TG    
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE-DGWLNTG---- 450

Query: 75  TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
                                            D   +  DGY  + GR KD+IIRGG N
Sbjct: 451 ---------------------------------DLGRIDADGYFWLTGRAKDLIIRGGHN 477

Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
           I P  IEE +  HP V  A A G PD   GE
Sbjct: 478 IDPAAIEEALLRHPAVALAAAVGRPDAHAGE 508

Length = 632

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 41/167 (24%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + +VVD +   V  G  GELL RG   + GY+   +        D               
Sbjct: 369 EVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDAD--------------- 413

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                               GF+ S   D      DGY  V GR+KD I RGGE I  +E
Sbjct: 414 --------------------GFYRS--GDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEE 451

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN----AKLNAY 182
           +E  +  HP V +A    +PDE +GE+    I +KE     A+L  +
Sbjct: 452 VENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRF 498

Length = 542

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.7 bits (187), Expect = 6e-15
 Identities = 29/82 (35%), Positives = 41/82 (50%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   + E+GY   VGR  DMI   G  + P EIEE I  HP V EA   GVPD  +G+ +
Sbjct: 237 DLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAI 296

Query: 458 GISIKLKENAKLNADDIRTFCK 479
              +   +   L+  ++   C+
Sbjct: 297 VAVVVSADGESLDEKELLKHCR 318

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 77.0 bits (190), Expect = 6e-15
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  V+ E+G+ ++V R KDMI+  G N+YP EIE+ +  HP VLE  A GVP E  GE V
Sbjct: 438 DIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAV 497

Query: 458 GISIKLKENAKLNADDIRTFCK 479
            I + +K++  L  +++ T C+
Sbjct: 498 KIFV-VKKDPSLTEEELITHCR 518

Length = 560

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 43/151 (28%)

Query: 20  QAKVVDHN-----NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKK 74
           + +V   +      R    G  G L IRG     GY  D       +  D WL TG    
Sbjct: 185 RVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLE-DGWLNTG---- 239

Query: 75  TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
                                            D   +  DGY  + GR KD+IIRGG N
Sbjct: 240 ---------------------------------DLGRIDADGYLWLTGRAKDLIIRGGHN 266

Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
           I P+ IEE +  HP V  A A G PD   GE
Sbjct: 267 IDPQMIEEALLRHPAVALAAAVGRPDAYAGE 297

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  V+  DG+ ++V R KD+II  G N+YP EIE+ +  HP V    A GVPDER GE V
Sbjct: 447 DIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAV 506

Query: 458 GISIKLKENAKLNADDIRTFCK 479
            + +  ++   L+ ++++ +CK
Sbjct: 507 KLFVVARD-PGLSVEELKAYCK 527

Length = 562

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 46/146 (31%), Positives = 60/146 (41%), Gaps = 39/146 (26%)

Query: 23  VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDR-WLRTGRYKKTSFLYSA 81
           ++D +   +P G PG +   G      Y  D  KT E   PD  W   G           
Sbjct: 340 ILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVG----------- 387

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                            IG+          + EDGY  +  R   MII GG NIYP+E E
Sbjct: 388 ----------------DIGY----------VDEDGYLYLTDRAAFMIISGGVNIYPQEAE 421

Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEV 167
             + THP V +A  +GVP+E +GEEV
Sbjct: 422 NLLITHPKVADAAVFGVPNEDLGEEV 447

Length = 511

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDG   +V R K++I   G  + P E+E  +  HP V +A   G+PDE  GE     + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           K  +KL   +++ +   KV+K+
Sbjct: 444 KPGSKLTEQEVKDYVAKKVAKY 465

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 49/155 (31%), Positives = 56/155 (36%), Gaps = 40/155 (25%)

Query: 23  VVDHNNRIVPFGTPGELLI-RGH-CNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
           VVD   R VP G  GE+ + R      LGYW + + T        WL TG          
Sbjct: 273 VVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF-AGDWLLTG---------- 321

Query: 81  AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
                                      D      DGY    GR  D+I   G  I P EI
Sbjct: 322 ---------------------------DLGRRDADGYLWFKGRADDVIKSSGYRIGPAEI 354

Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
           EE +  HP VLEA   GVPD   GE V   + L E
Sbjct: 355 EECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAE 389

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.2 bits (183), Expect = 2e-14
 Identities = 29/84 (34%), Positives = 51/84 (60%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+ V   +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
           +L+  A L+  ++R  C+  ++ +
Sbjct: 316 QLRAGAGLDLAELRDHCRQHLAGY 339

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 38/160 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + ++ D   R +P    GE+ +RG     GYW+D +KT E    D W R+G         
Sbjct: 329 EIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-WFRSG--------- 378

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                              +G+          L E+G+  +  R KDMII GGENI   E
Sbjct: 379 ------------------DVGY----------LDEEGFLYLTDRKKDMIISGGENIASSE 410

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
           +E  I   P V EA   GV D+R GE +   + L   A L
Sbjct: 411 VERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATL 450

Length = 497

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  +  R   MII GG NIYP+E E  + THP V +A  +GVP+E +GEEV   ++ 
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQP 453

Query: 464 KENAKLNAD---DIRTFCKGKVSKF 485
            +          ++  FC+ ++S+ 
Sbjct: 454 VDGVDPGPALAAELIAFCRQRLSRQ 478

Length = 511

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 74.6 bits (184), Expect = 3e-14
 Identities = 32/85 (37%), Positives = 47/85 (55%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
           VL  DGY ++  R KD+II GGENI   E+E+ +  HP VL A     PD + GE     
Sbjct: 425 VLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAF 484

Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
           ++LK+ A    ++I   C+  ++ F
Sbjct: 485 VELKDGASATEEEIIAHCREHLAGF 509

Length = 545

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 392 RSIFEKDQFV-------LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
           R+  ++  F+       L  DGY  +  R +DM+I GG NIYP EIE  +   P V +  
Sbjct: 372 RAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCA 431

Query: 445 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
            +G+PD   GE +   ++ +  A L+  DIR   K +++ +
Sbjct: 432 VFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGY 472

Length = 509

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 48/164 (29%), Positives = 60/164 (36%), Gaps = 41/164 (25%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGH--CNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
             + VD     VP G  GEL++R       L YW D ++ KE     RW RTG       
Sbjct: 351 AVRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF-GRWYRTG------- 401

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D     EDGY  + GR  D+I   G+ I P
Sbjct: 402 ------------------------------DWAERDEDGYFWLHGRSDDVIKVSGKRIGP 431

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
            EIE  +  HP V EA   GVPD   G+ V   + L    + N 
Sbjct: 432 LEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNE 475

Length = 528

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 37/156 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + +VVD +   V  G  G LL RG     GY++  +        +               
Sbjct: 362 EVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAE--------------- 406

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                               GF+Y+   D   L  +GY  VVGR KD I RGGE I  +E
Sbjct: 407 --------------------GFYYT--GDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEE 444

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
           IE  +  HP V +A    +PDE +GE+    I +++
Sbjct: 445 IENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRD 480

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.3 bits (180), Expect = 8e-14
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 462
           E+GY  VV R KDMII GGENIY  E+E  + +HP+++E    G  DE+ GE  V ++  
Sbjct: 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Query: 463 LKENAKLNADDIRTFCKGKVSKF 485
             ++A L  +D+  F   +++++
Sbjct: 471 RNDDAALTLEDLAEFLTDRLARY 493

Length = 542

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 37/166 (22%)

Query: 20  QAKVVDHNNRIVPFGTP--GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
              V+D +   VP G+   G +   G    LGY++D +KT +T                 
Sbjct: 197 DTVVLDEDGSEVPPGSGEVGWIARGGRVP-LGYYKDPEKTAKT----------------- 238

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
            +  +   R                Y++  D   +  DG   ++GR    I  GGE ++P
Sbjct: 239 -FREIDGVR----------------YAVPGDFARVEADGTITLLGRGSVCINTGGEKVFP 281

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           +E+EE ++ HP+V +A   GVPDER G+ V   ++L+  A L+  E
Sbjct: 282 EEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAE 327

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E+G+  +VGR K+MI+ GG NI+P+EIE  +  HP V E    GVPD   GE+    IK 
Sbjct: 373 EEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG 432

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
               +     +++FC  ++S F
Sbjct: 433 SATKQ----QLKSFCLQRLSSF 450

Length = 487

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 375 KKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI 434
           K YL + E     +  G      D   L  +G+  V+GR  D+II GGENIYP+EIE  +
Sbjct: 304 KGYLYQGELTPAFEQQG-WFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVL 362

Query: 435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
             HP + EA     PD   G +V ++  +   + ++   +  +   K++K+
Sbjct: 363 YQHPGIQEAVVVPKPDAEWG-QVPVAY-IVSESDISQAKLIAYLTEKLAKY 411

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 41/160 (25%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           ++VD    ++P  T G + I+G     GY+ + + TK++I PD WL+TG           
Sbjct: 326 RIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTG----------- 374

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                            +GF             +G   + GR KD+II  G+N YP +IE
Sbjct: 375 ----------------DLGFLR-----------NGRLVITGRAKDIIIVNGQNYYPHDIE 407

Query: 142 EFIQTHPNVL--EAYAYGVPDERMG-EEVGISIKLKENAK 178
              +    +      A GV DE+   EEV I ++ +++  
Sbjct: 408 RVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLD 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 392 RSIFEKDQF-------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
            S F+ + F        +  DGY  VVGR KD I RGGE I  +EIE  +  HP V+ A 
Sbjct: 402 ASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAA 461

Query: 445 AYGVPDERMGE 455
              + DE MGE
Sbjct: 462 LVSMEDELMGE 472

Length = 536

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L E+G   VVGR  +MI+ GGEN+YP E+E+ + THP+V EA   GV DE+ G+ +   +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485

Query: 462 KLKENAKLNADDIRT 476
            LK  A    + ++ 
Sbjct: 486 VLKPGASATPETLKQ 500

Length = 537

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 445
           D     EDGY +++GR  D +   GE I P EIE  +  HP V EA  
Sbjct: 365 DLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 33/82 (40%), Positives = 45/82 (54%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY Q+  R KD+I  GGE I   E+E  +  HP V EA   GVP E+ GE     + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           K  AK+  +++      KV+K+
Sbjct: 469 KPGAKVTEEELLEHLAKKVAKW 490

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 71.5 bits (175), Expect = 3e-13
 Identities = 45/161 (27%), Positives = 61/161 (37%), Gaps = 39/161 (24%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + KV+D N   +  G  G LL+RG  N  GY +       +   + W  TG         
Sbjct: 374 EVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLN--STDAEGWFDTG--------- 422

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D      +GY ++ GR KD+IIRGGENI   E
Sbjct: 423 ----------------------------DLAFQDAEGYIRINGRSKDVIIRGGENIPVVE 454

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN 180
           IE  +  HP V +      PDER+GE     +  K    L+
Sbjct: 455 IENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLD 495

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E GY ++ GR KD+I+RGGENI  +E+E+ +  HP + +A    +PDER+GE     + L
Sbjct: 422 EAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVL 481

Query: 464 KENA---KLNADDIRTFCKGKVSK 484
           K       L  + +  F + +V+K
Sbjct: 482 KAPHHSLTL-EEVVAFFSRKRVAK 504

Length = 547

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 71.1 bits (174), Expect = 4e-13
 Identities = 32/84 (38%), Positives = 45/84 (53%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L E+G+  +  R KDMII GGENI   E+E  I   P V EA   GV D+R GE +   +
Sbjct: 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
            L   A L  + +   C+ +++ F
Sbjct: 443 VLNPGATLTLEALDRHCRQRLASF 466

Length = 497

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 41/171 (23%)

Query: 21  AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKE---TIGPDRWLRTGRYKKTS 76
           A+V+D      +P G  GE+++ G     GYW   + T E    I   R+ RTG      
Sbjct: 368 ARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG------ 421

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                 +G           + E+GY  +  R+K MI   G  ++
Sbjct: 422 ---------------------DLGR----------MDEEGYFFITDRLKRMINASGFKVW 450

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSI 187
           P E+E  +  HP + EA     PD R GE V   + L+  A+    E++ I
Sbjct: 451 PAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEII 501

Length = 546

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 71.2 bits (174), Expect = 4e-13
 Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 38/135 (28%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           G L I+   NMLGYW + ++T E +  D W+ TG                          
Sbjct: 375 GTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTG-------------------------- 407

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
                      D    REDG+  + GR  +MII GG NI P E++   +    V EA  Y
Sbjct: 408 -----------DLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACY 456

Query: 157 GVPDERMGEEVGISI 171
            +PDE  G  VG+++
Sbjct: 457 EIPDEEFGALVGLAV 471

Length = 540

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 71.2 bits (174), Expect = 4e-13
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 38/162 (23%)

Query: 18  SFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
           + + K +D    R +P  TPGEL +R  C M GY+ ++++T  TI  D WL TG      
Sbjct: 369 NLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTG------ 422

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                 IG+          + +DG   +V RIK++I   G  + 
Sbjct: 423 ---------------------DIGY----------IDDDGDIFIVDRIKELIKYKGFQVA 451

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
           P E+E  + THP+V +A    +PDE  GE     + +   AK
Sbjct: 452 PAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK 493

Length = 546

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 44/162 (27%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
           ++A++VD     VP G  G L +RG   C  L    D+++ +E +  D W  TG      
Sbjct: 322 YEARIVDDQGNEVPRGEAGRLAVRGPTGCRYL----DDERQQEYVR-DGWNVTG------ 370

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                          D F   EDGY   V R  DMI+  G NI 
Sbjct: 371 -------------------------------DIFRQDEDGYFHYVARSDDMIVSAGYNIA 399

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
             E+E+ + THP+V E    GVPDE  G+ V   I L++  K
Sbjct: 400 APEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTK 441

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 70.3 bits (173), Expect = 6e-13
 Identities = 30/84 (35%), Positives = 53/84 (63%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+EV   +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
           +L+E A+ +  ++R  C+  ++ +
Sbjct: 478 QLREGARPDLAELRAHCRSSLAGY 501

Length = 533

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E+GY   + R+K MI   G  ++P E+E  +  HP VLE    G PD R GE V   + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381

Query: 464 KENA--KLNADDIRTFCKGKVSKF 485
           K +   K+  +DI  +C+ +++ +
Sbjct: 382 KPDYRGKVTEEDIIEWCRERMAAY 405

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 69.8 bits (171), Expect = 8e-13
 Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 38/128 (29%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE++++G   M GY    + T        W  TG                          
Sbjct: 293 GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTG-------------------------- 325

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
             IG           L  +G+  V+GR  D+II GGENIYP+EIE  +  HP + EA   
Sbjct: 326 -DIGE----------LDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVV 374

Query: 157 GVPDERMG 164
             PD   G
Sbjct: 375 PKPDAEWG 382

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 38/149 (25%)

Query: 35  TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94
           T GE++ RG+  M GY ++ + T+E      W  TG                        
Sbjct: 387 TIGEIMFRGNIVMKGYLKNPKATEEAFA-GGWFHTG------------------------ 421

Query: 95  QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
                        D  VL  DGY ++  R KD+II GGENI   E+E+ +  HP VL A 
Sbjct: 422 -------------DLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAA 468

Query: 155 AYGVPDERMGEEVGISIKLKENAKLNAYE 183
               PD + GE     ++LK+ A     E
Sbjct: 469 VVAKPDPKWGEVPCAFVELKDGASATEEE 497

Length = 545

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 39/163 (23%)

Query: 22  KVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
           K+ D     ++P G  GE+++R    + GYW   + T E +  D WL TG          
Sbjct: 399 KICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTG---------- 447

Query: 81  AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
                             IG           + E G+   +GR K+M+   G +++P E+
Sbjct: 448 -----------------DIG----------KIDEQGFLHYLGRRKEMLKVNGMSVFPSEV 480

Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           E  +  HP VL +   G PD   G+     ++LK  A L A  
Sbjct: 481 EALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAA 523

Length = 567

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 171
           L E+G   VVGR  +MI+ GGEN+YP E+E+ + THP+V EA   GV DE+ G+ +   +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485

Query: 172 KLKENA 177
            LK  A
Sbjct: 486 VLKPGA 491

Length = 537

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 38/153 (24%)

Query: 14  LSSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRY 72
           L + + QAKVVD     ++P G  GEL I+G   M GY  + + T+ TI  D WLRTG  
Sbjct: 378 LLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG-- 435

Query: 73  KKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGG 132
                                     I +F           EDGY  +V R+K++I   G
Sbjct: 436 -------------------------DIAYF----------DEDGYLYIVDRLKEIIKYKG 460

Query: 133 ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
             I P ++E  + +HP +++A    VPD+  GE
Sbjct: 461 FQIAPADLEAVLISHPEIIDAAVTAVPDKECGE 493

Length = 560

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  V   DGY ++  R KD+II GGENI   E+E  + THP VLEA     PDER GE  
Sbjct: 436 DLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESP 495

Query: 458 GISIKLKENAKLN-----ADDIRTFCKGKV 482
              + LK     +     A+DI  FC+ ++
Sbjct: 496 CAFVTLKPGVDKSDEAALAEDIMKFCRERL 525

Length = 567

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 67.8 bits (165), Expect = 5e-12
 Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 38/162 (23%)

Query: 30  IVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLK 89
            +P G  GE++++G   M GYW   ++T   +  D WL TG                   
Sbjct: 397 ALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTG------------------- 436

Query: 90  PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN 149
                    +G+          + EDG+  V  R KDMI+  G N+YP+E+EE +  H  
Sbjct: 437 --------DVGY----------MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEK 478

Query: 150 VLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDY 191
           V E    GVPD   GE V   + LKE  + +  E    +  Y
Sbjct: 479 VQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKY 520

Length = 563

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 67.5 bits (164), Expect = 5e-12
 Identities = 33/157 (21%), Positives = 51/157 (32%), Gaps = 19/157 (12%)

Query: 335 ALKGLYHFKKWMN---------PKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENIT 385
           A  GL      +          PK      +V L  P              Y   EE   
Sbjct: 332 AKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG---------YYGNEEATR 382

Query: 386 VPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 445
              +        D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA  
Sbjct: 383 SALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV 442

Query: 446 YGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 482
             +P  +  E     +  +   K   +++        
Sbjct: 443 VAIPHPKWQERPLAVVVPRG-EKPTPEELNEHLLKAG 478

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 67.5 bits (165), Expect = 6e-12
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 405 DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 462
           D  G +  +GR  D I  GGEN+YP+E+E  +  HP V      GVPD R+ E V   ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484

Query: 463 LKEN 466
           L++ 
Sbjct: 485 LRDG 488

Length = 563

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 49/158 (31%), Positives = 63/158 (39%), Gaps = 42/158 (26%)

Query: 23  VVDHNNRIVPFGTPGELLIRGHCNML----GYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           V+D + + +  G PG+L I    + L    GYW+D +KT E I   RW  TG        
Sbjct: 272 VLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTG-------- 322

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D     EDGY   +GR  D+II  G  I P 
Sbjct: 323 -----------------------------DLVERDEDGYFWFIGRADDVIISAGYRIGPF 353

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
           ++E  +  HP V EA   GVPD   GE V   + LKE 
Sbjct: 354 DVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEG 391

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
           DGY ++ GR KD+IIRGGENI   EIE  +  HP + +      PDER+GE     +  +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491

Query: 465 ENAKLNADDIRTFCKGK 481
               L+ +++  F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508

Length = 547

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 42/109 (38%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 372 YHYKKYLR-EEENITVPDSAG--RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 428
           Y  + Y R  E N    D+ G  RS    D      DGY  V GR+KD I RGGE I  +
Sbjct: 394 YTIRGYYRAPEHNARAFDADGFYRS---GDLVRRDPDGYLVVEGRVKDQINRGGEKIAAE 450

Query: 429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF 477
           E+E  +  HP V +A    +PDE +GE+    I +KE   L A  +R F
Sbjct: 451 EVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE-PPLRAAQLRRF 498

Length = 542

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 66.4 bits (163), Expect = 1e-11
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 43/167 (25%)

Query: 22  KVVDHNNRIVPFGT--PGELLIRGHCNMLGYWEDEQKTKET---IGPDRWLRTGRYKKTS 76
            V+D +   V  G+   G +  RGH   LGY++D +KT ET   I   R+          
Sbjct: 361 VVLDEDGNPVEPGSGEIGWIARRGHIP-LGYYKDPEKTAETFPTIDGVRY---------- 409

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                      ++  D+  +  DG   ++GR    I  GGE ++
Sbjct: 410 ---------------------------AIPGDRARVEADGTITLLGRGSVCINTGGEKVF 442

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           P+E+EE ++ HP+V +A   GVPDER G+EV   ++L+E A+ +  E
Sbjct: 443 PEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAE 489

Length = 533

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 42/148 (28%)

Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           ++ +     +P    G + +RG   M GY+ DE+     +  D WL TG           
Sbjct: 397 EIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTG----------- 444

Query: 82  MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
                            +G+             DGY  + GR KD+II  G NI+P++IE
Sbjct: 445 ----------------DLGY-----------LLDGYLYITGRAKDLIIINGRNIWPQDIE 477

Query: 142 EFIQTHPNVL--EAYAYGVPDERMGEEV 167
              +  P +   +A A+ +  E  GE++
Sbjct: 478 WIAEQEPELRSGDAAAFSIAQEN-GEKI 504

Length = 579

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
           +GY ++ GR KD+IIRGGENI   EIE  +  HP V +      PDER+GE     +  K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489

Query: 465 ENAKLNADDIRTFCKGK 481
               L+   +  F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 38/143 (26%)

Query: 35  TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94
           T GE+++RG+  M GY ++ +  +E                                   
Sbjct: 401 TMGEIVMRGNMVMKGYLKNPKANEEAF--------------------------------- 427

Query: 95  QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
                G+F+S   D  V   DGY ++  R KD+II GGENI   E+E  + THP VLEA 
Sbjct: 428 ---ANGWFHS--GDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEAS 482

Query: 155 AYGVPDERMGEEVGISIKLKENA 177
               PDER GE     + LK   
Sbjct: 483 VVARPDERWGESPCAFVTLKPGV 505

Length = 567

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 65.0 bits (158), Expect = 3e-11
 Identities = 29/74 (39%), Positives = 40/74 (54%)

Query: 108 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           D   L   G   +VGR  DMII GGEN+YP+ +E  +  HP V +    GVPDER G  +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461

Query: 168 GISIKLKENAKLNA 181
              + L   + ++A
Sbjct: 462 AAFVVLHPGSGVDA 475

Length = 516

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 39/163 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNML-GYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           + + VD + R +P G  GE+  R   N    Y    +K  E I    ++ +G        
Sbjct: 334 ELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAE-IDRGGFITSG-------- 384

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                               +G+          L  DGY  +  R +DM+I GG NIYP 
Sbjct: 385 -------------------DVGY----------LDADGYLFLCDRKRDMVISGGVNIYPA 415

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           EIE  +   P V +   +G+PD   GE +   ++ +  A L+ 
Sbjct: 416 EIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDE 458

Length = 509

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 30/73 (41%), Positives = 40/73 (54%)

Query: 106 VSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
           V D     E+G+  +VGR K+MI+ GG NI+P+EIE  +  HP V E    GVPD   GE
Sbjct: 365 VRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGE 424

Query: 166 EVGISIKLKENAK 178
           +    IK     +
Sbjct: 425 KPVAIIKGSATKQ 437

Length = 487

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 63.9 bits (155), Expect = 6e-11
 Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 67  LRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGF-FYSLVSDQFVLREDGYGQVVGRIK 125
           L  GR     F    +  R    P +    Q     F++ V D   + EDGY  +  R  
Sbjct: 343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKS 402

Query: 126 DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
            MII GG NIYP+E E  +  HP V +    GVPD  MGE+V   I+L E
Sbjct: 403 FMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVE 452

Length = 501

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E+G+   V R  +MI RGGEN+   E+E  I THP + +    G+ D    E +   + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
            E   L+ ++   FC+  ++KF
Sbjct: 470 NEGETLSEEEFFAFCEQNMAKF 491

Length = 517

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 63.8 bits (156), Expect = 8e-11
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 44/152 (28%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
              ++VD +  ++P G  G L +RG     GY+ + +   E    D W RTG        
Sbjct: 383 VAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTG-------- 434

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVV--GRIKDMIIRGGENIY 136
                               +GF          L +   G++   GR KDMII  G N Y
Sbjct: 435 -------------------DLGF----------LHD---GRLTITGREKDMIIINGVNYY 462

Query: 137 PKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 166
             EIE  ++  P V  ++  A  V D   G +
Sbjct: 463 NHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 372 YHYKKYLR-EEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 430
           Y ++ Y +  E N    D+ G      D   L  +GY  VVGR KD I RGGE I  +EI
Sbjct: 387 YTFRGYYKAPEHNAAAFDAEGFYY-TGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEI 445

Query: 431 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG 480
           E  +  HP V +A    +PDE +GE+    I +++ A L A  +R F + 
Sbjct: 446 ENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA-LKAAQLRRFLRE 494

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E+GY  +  R+K MI   G  ++P E+E  +  HP + EA     PD R GE V   + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487

Query: 464 KENA--KLNADDIRTFCKG 480
           +  A  K   ++I  + + 
Sbjct: 488 RPEARGKTTEEEIIAWARE 506

Length = 546

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 47/143 (32%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD--------RWLRTGR 71
           +  V+D + R VP G  GEL I G     GY    + T E   PD        R  RTG 
Sbjct: 303 RLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTG- 361

Query: 72  YKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IR 130
                                               D      DG  + +GRI D + IR
Sbjct: 362 ------------------------------------DLVRYLPDGNLEFLGRIDDQVKIR 385

Query: 131 GGENIYPKEIEEFIQTHPNVLEA 153
            G  I   EIE  +  HP V EA
Sbjct: 386 -GYRIELGEIEAALLRHPGVREA 407

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 29/62 (46%), Positives = 32/62 (51%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
            DGY    GR  D+I   G  I P EIEE +  HP VLEA   GVPD   GE V   + L
Sbjct: 328 ADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVL 387

Query: 464 KE 465
            E
Sbjct: 388 AE 389

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 18/118 (15%)

Query: 365 MDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGEN 424
           +D E +    ++Y+R+  N+T            D F   EDGY   V R  DMI+  G N
Sbjct: 353 LDDERQ----QEYVRDGWNVT-----------GDIFRQDEDGYFHYVARSDDMIVSAGYN 397

Query: 425 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCK 479
           I   E+E+ + THP+V E    GVPDE  G+ V   I L++  K   L A+ ++ F K
Sbjct: 398 IAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVK 455

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.0 bits (150), Expect = 3e-10
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           + EDG+  V  R KDMI+  G N+YP+E+EE +  H  V E    GVPD   GE V   +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
            LKE  + + +++  F +  ++ +
Sbjct: 501 VLKEGTECSEEELNQFARKYLAAY 524

Length = 563

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 40/144 (27%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKET-IGPDRWLRTGRYKKTSF 77
           ++ ++V    + V  G PGELLI G  +   YW +  KT++T  G   W R+G       
Sbjct: 339 YRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGE--WTRSG------- 389

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D++V  +DG     GR  DM+   G  + P
Sbjct: 390 ------------------------------DKYVRNDDGSYTYAGRTDDMLKVSGIYVSP 419

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDE 161
            EIE  +  HP VLEA   GV DE
Sbjct: 420 FEIESALIQHPAVLEAAVVGVEDE 443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 365 MDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGEN 424
             S A  Y     L E+   T+ D   R+    D+F    DG+ +  GR  DMI   G+ 
Sbjct: 293 GPSLAPGYWN---LPEKTQRTLRDGWLRT---GDRFSRDADGWYRYQGRADDMIKVSGQW 346

Query: 425 IYPKEIEEFIQTHPNVLEAYAYGVPDERMG----------EEVGISIKLKENAKLNADDI 474
           + P E+E  +  HP V EA    VPDE                 I   L         D+
Sbjct: 347 VSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLL-------ERDL 399

Query: 475 RTFCKGKVSKF 485
             F + +++ +
Sbjct: 400 HRFLRERLAPY 410

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 61.0 bits (149), Expect = 6e-10
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 38/126 (30%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+ IRG     GY+++ +KT E    D W  TG                          
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTG-------------------------- 384

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNVLEAYA 155
             IG +            DG  +++ R K++  +  GE +  +++E   ++ P V +   
Sbjct: 385 -DIGEW----------LPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICV 433

Query: 156 YGVPDE 161
           YG   +
Sbjct: 434 YGDSLK 439

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 60.8 bits (148), Expect = 8e-10
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D     EDGY  + GR  D+I   G+ I P EIE  +  HP V EA   GVPD   G+ V
Sbjct: 402 DWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIV 461

Query: 458 GISIKLKENAKLN--ADDIRTFCKGKVSKF 485
              + L    + N  A++IR      +   
Sbjct: 462 LAFVVLAAGVEPNELAEEIRRHVARNIGPH 491

Length = 528

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 30/62 (48%), Positives = 36/62 (58%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  +  R   MII GG NIYP+E E  +  HP V +    GVPD  MGE+V   I+L
Sbjct: 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQL 450

Query: 464 KE 465
            E
Sbjct: 451 VE 452

Length = 501

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L   GY  ++GR    II GGEN+YP E+E  I     V +    G+PD   GE V  +I
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV-TAI 392

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
            + ++  ++ ++++T  K ++S F
Sbjct: 393 YVPKDPSISLEELKTAIKDQLSPF 416

Length = 452

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 40/151 (26%), Positives = 49/151 (32%), Gaps = 49/151 (32%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKET--IGPD--RWLRTGRYKKT 75
           +  V+D + R  P   PGEL I G    LGYW D + T E         R  RTG     
Sbjct: 310 KFYVLDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTG----- 364

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGR----IKDMIIRG 131
                                           D    R DG  + +GR    +K   IR 
Sbjct: 365 --------------------------------DLGRYRPDGTIEFLGRADHQVK---IR- 388

Query: 132 GENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
           G  +   EIE  +  HP V  A    V D  
Sbjct: 389 GYRVELGEIEAALARHPGVQRAVVVVVGDGG 419

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 38/111 (34%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+ I G    +GY   E+KT+E I  D WL +G                          
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSG-------------------------- 424

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT 146
             +GF          L +DG+  + GRIK++II  GGEN+ P  IEE ++ 
Sbjct: 425 -DLGF----------LDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKK 464

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 43/151 (28%), Positives = 57/151 (37%), Gaps = 40/151 (26%)

Query: 20  QAKVVDHNNRIVPFG--TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           + ++VD +   VP    T GEL +RG     GY      T      D W RTG       
Sbjct: 303 ETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG------- 355

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIK-DMIIRGGENIY 136
                                         D  V+  DG  ++VGR   D+I  GG  I 
Sbjct: 356 ------------------------------DVAVVDPDGMHRIVGRESTDLIKSGGYRIG 385

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
             EIE  +  HP V EA   GVPD+ +G+ +
Sbjct: 386 AGEIETALLGHPGVREAAVVGVPDDDLGQRI 416

Length = 471

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 42/164 (25%), Positives = 57/164 (34%), Gaps = 44/164 (26%)

Query: 21  AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKE---TIGPDRWLRTGRYKKTSF 77
           A ++D + R VP G  GEL+I G     GY  + +KT +        RW RTG       
Sbjct: 283 ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTG------- 335

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D   L +DG    +GR    I   G  I  
Sbjct: 336 ------------------------------DLVYLEDDGLLVYLGRKDFQIKLHGYRIEL 365

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS--IKLKENAKL 179
           +EIE  ++  P V EA    VP     + V +   +  KE A  
Sbjct: 366 EEIEAALRALPGVEEAVVLPVPKG--EKVVRLVAFVVGKEGALD 407

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 26/134 (19%)

Query: 34  GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93
           G  GEL+ RG    +GYW D +KT E                          R L P   
Sbjct: 354 GEEGELVHRGALVAMGYWNDPEKTAE------------------------RFRPLPP--F 387

Query: 94  QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA 153
             +  +        D     E+G+   VGR  +MI   G  + P E+EE       V EA
Sbjct: 388 PGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEA 447

Query: 154 YAYGVPDERMGEEV 167
            A+GVPD  +G+ +
Sbjct: 448 VAFGVPDPTLGQAI 461

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 374 YKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF 433
           +  Y  + E  T    AGR     D     EDGY   +GR  D+II  G  I P ++E  
Sbjct: 300 FSGYWDDPEK-TAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESA 358

Query: 434 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSK 484
           +  HP V EA   GVPD   GE V   + LKE    +   A++++ F K ++S 
Sbjct: 359 LLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSA 412

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 449
             + IF KD     E G    +GR+ D+I   G N+YP E+E+ +   P V EA  Y   
Sbjct: 289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGK 348

Query: 450 DERMGEEVGISIKLKENAKLNAD--DIRTFC 478
           D   GE V    K K  +    D   +R +C
Sbjct: 349 DPVAGERV----KAKVISHEEIDPVQLREWC 375

Length = 414

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 390 AGRSIFEKDQF-------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE 442
               I + D F        +   GY ++  R KD+I  GGE I   ++E     HP V E
Sbjct: 401 VDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAE 460

Query: 443 AYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
           A   GV   +  E   + ++LK       ++I  +  GK++K+
Sbjct: 461 AAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKW 503

Length = 542

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 57.7 bits (140), Expect = 8e-09
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 38/115 (33%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+LIR    M GY++D +KT E    D WL TG                          
Sbjct: 343 GEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTG-------------------------- 376

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIYPKEIEEFIQTHPNV 150
                      D+  + EDG+ ++ GR+K++     G+ + P  IE  +  +P+V
Sbjct: 377 -----------DKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHV 420

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 57.3 bits (139), Expect = 9e-09
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           L   GY  ++GR    II GGEN+YP E+E  I     V +    G+PD   GE V
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV 389

Length = 452

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D++   EDGY    GR  DM+   G  + P E+E+ +  HP VLEA   G  DE    + 
Sbjct: 390 DKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKP 449

Query: 458 GISIKLKENAKLN---ADDIRTFCKGKVSKF 485
              + LK+  + +     +++ F K K++ +
Sbjct: 450 KAFVVLKDGYQPSPELETELKDFVKDKLAPY 480

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 403 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           REDG+  + GR  +MII GG NI P E++   +    V EA  Y +PDE  G  VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471

Length = 540

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
           GFF +   D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P
Sbjct: 389 GFFRT--GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIP 446

Query: 160 DERMGEEVGISIKLKE 175
             +  E     +  + 
Sbjct: 447 HPKWQERPLAVVVPRG 462

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 43/157 (27%)

Query: 16  SSSFQAKVVDHNNRIVPFGTPGELLI-----RGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
           S  +  +++D N  ++P GT G++ I     R  C    Y ++ +KT  TI  D ++ TG
Sbjct: 349 SPPYDVQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TG 407

Query: 71  RYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR 130
                                                D+ ++ EDGY   VGR  D+I  
Sbjct: 408 -------------------------------------DRGIMDEDGYFWFVGRADDVINS 430

Query: 131 GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
            G  I P E+E  +  HP V+E+     PD   GE V
Sbjct: 431 SGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 38/147 (25%)

Query: 20  QAKVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           + K+VD      +P   PGE+ IRG   M GY  D + T  TI  D WL TG        
Sbjct: 366 ELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTG-------- 417

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                               IG+          + +D    +V R+K++I   G  + P 
Sbjct: 418 -------------------DIGY----------IDDDDELFIVDRLKELIKYKGFQVAPA 448

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGE 165
           E+E  + +HP++ +A    + DE  GE
Sbjct: 449 ELEALLISHPSIADAAVVPMKDEVAGE 475

Length = 537

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 42/151 (27%), Positives = 54/151 (35%), Gaps = 47/151 (31%)

Query: 23  VVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD-------RWLRTGRYKKT 75
           V+D + + VP G PGEL I G     GY    + T E   PD       R  RTG     
Sbjct: 271 VLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTG----- 325

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGEN 134
                                           D    R DG  + +GR  D + IR G  
Sbjct: 326 --------------------------------DLVRWRPDGRLEYLGRADDQVKIR-GFR 352

Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
           I   EIE  ++ HP V +A    V +E  G+
Sbjct: 353 IELGEIEAALRAHPGVADAVVV-VREEGPGD 382

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE-VGISIKLKENAK 468
           ++GR+ ++   GGE I P+EIE  I  HP V + +   V D   G+  V +   ++ +++
Sbjct: 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAV---VESDSE 405

Query: 469 LNADDIRTFCKGKVSKF 485
               ++  + + K+++F
Sbjct: 406 AAVVNLAEWLQDKLARF 422

Length = 458

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 43/166 (25%)

Query: 16  SSSFQAKVVDHNNRIVPFGTPGELLIR---GHCNML--GYWEDEQKTKETIGPDRWLRTG 70
           S  +   ++D + +    G  GE++IR   G    L  GY+ D ++T E      W    
Sbjct: 359 SPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEV-----W---- 409

Query: 71  RYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR 130
                                        G++++   D   + EDGY   VGR  D+I  
Sbjct: 410 ---------------------------HDGYYHT--GDTAWMDEDGYLWFVGRADDLIKS 440

Query: 131 GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
            G  I P E+E  +  HP VLE    GVPD   G+ V  +I L + 
Sbjct: 441 SGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKG 486

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E G+   +GR K+M+   G +++P E+E  +  HP VL +   G PD   G+     ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513

Query: 464 KENAKLNADDIRTFCK 479
           K  A L A  ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529

Length = 567

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 55.3 bits (134), Expect = 4e-08
 Identities = 38/159 (23%), Positives = 49/159 (30%), Gaps = 45/159 (28%)

Query: 31  VPFGTPGELL--IRGHCNMLGYWEDEQKTKETIGP-----DRWLRTGRYKKTSFLYSAMA 83
           VP G  G LL  I       GY +DE   K+ +       D +  TG             
Sbjct: 277 VPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTG------------- 323

Query: 84  IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF 143
                                   D       GY   V R+ D     GEN+   E+EE 
Sbjct: 324 ------------------------DLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEV 359

Query: 144 IQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKLNA 181
           +  HP V EA  YGV      G     ++ L   A  + 
Sbjct: 360 LAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDP 398

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 44/162 (27%)

Query: 20  QAKVVDHN----NRIVPFGTPGELLIR-GHCNML-GYWEDEQKTKETIGPDRWLRTGRYK 73
           +A V++ +      +   G  GEL ++ G  +M  GY  +E++   +   D W  TG   
Sbjct: 270 EAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG--- 325

Query: 74  KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
                                             D     EDGY   VGR  D+I   G 
Sbjct: 326 ----------------------------------DLAYRDEDGYFWFVGRADDVIKTAGH 351

Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
            + P E+E  +  HP V EA   G PD   GE V   + L+ 
Sbjct: 352 LVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRP 393

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 55.3 bits (134), Expect = 5e-08
 Identities = 37/155 (23%), Positives = 51/155 (32%), Gaps = 49/155 (31%)

Query: 22   KVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKE---TIGPDRWLRTGRYKKTSF 77
            ++VD      +P G  G +LI G   M GY  D +KT E    I    W  TG       
Sbjct: 972  RIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTG------- 1024

Query: 78   LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                          D+  L EDG+  +  R       GGE +  
Sbjct: 1025 ------------------------------DKGHLDEDGFLTITDRYSRFAKIGGEMVPL 1054

Query: 138  KEIEEFIQTHPNVLEA-----YAYGVPDERMGEEV 167
              +EE +      L           VPDE+ GE++
Sbjct: 1055 GAVEEELAK---ALGGEEVVFAVTAVPDEKKGEKL 1086

Length = 1146

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 25/54 (46%), Positives = 28/54 (51%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           EDGY   VGR  D+I   G  I P E+E  +  HP V EA   G PD   GE V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 24/74 (32%), Positives = 36/74 (48%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
            DGY    GR+ D +   GEN+    IE  +  +P+  E   Y VPD  +G++V  ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452

Query: 464 KENAKLNADDIRTF 477
              AK + D    F
Sbjct: 453 APGAKFDPDAFAEF 466

Length = 529

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 38/131 (29%)

Query: 35  TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ 94
           T GE++I+G   M GY ++ + T E      WL TG                        
Sbjct: 391 TMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTG------------------------ 425

Query: 95  QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
                        D  V+  DG+ ++  R KD+II GGENI   E+E  +  +P VLE  
Sbjct: 426 -------------DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETA 472

Query: 155 AYGVPDERMGE 165
              +P    GE
Sbjct: 473 VVAMPHPTWGE 483

Length = 579

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 459
           V GR+KD+II  G N YP++IE  ++     L    A A+ V  +   E + +
Sbjct: 434 VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 39/128 (30%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+ +RG    LGYW                                   +L PL   + 
Sbjct: 305 GEIWLRGASLALGYWRQ--------------------------------GQLVPLVNDE- 331

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
              G+F +   D+   + +G   ++GR+ ++   GGE I P+EIE  I  HP V + +  
Sbjct: 332 ---GWFAT--RDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVV 385

Query: 157 GVPDERMG 164
            V D   G
Sbjct: 386 PVADAEFG 393

Length = 458

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 53.6 bits (130), Expect = 1e-07
 Identities = 44/161 (27%), Positives = 54/161 (33%), Gaps = 54/161 (33%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG-RYKKTSFL 78
           +  V+D + R VP G PGEL I G     GY    + T E   PD +   G R  +T   
Sbjct: 275 RVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRT--- 331

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIY- 136
                                G       D      DG  + +GR  D + IRG    Y 
Sbjct: 332 ---------------------G-------DLARWLPDGNLEFLGRADDQVKIRG----YR 359

Query: 137 --PKEIEEFIQTHPNVLEA--------------YAYGVPDE 161
               EIE  +  HP V EA               AY VP  
Sbjct: 360 IELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAA 400

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 115 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           DG   V+GR  D I  GG  + P+ +E  + THP V +   +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298

Length = 358

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           DG   V+GR  D I  GG  + P+ +E  + THP V +   +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298

Length = 358

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  +V R+K++I   G  + P E+E  + +HP + +A     PDE  GE     +  
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457

Query: 464 KENAKLNADDIRTFCKGKVS 483
           +  ++L+ D++  F   +V+
Sbjct: 458 QPGSELSEDEVMQFVAKQVA 477

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 33/63 (52%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY   VGR  D+I   G  I P E+E  +  HP VLE    GVPD   G+ V  +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483

Query: 464 KEN 466
            + 
Sbjct: 484 TKG 486

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 56/170 (32%)

Query: 22  KVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIG----------PDR-WLRT 69
           ++VD +  I  P GT GE+ + G     GYW+  ++T+ T G          P+  WLRT
Sbjct: 382 RIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRT 441

Query: 70  GRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII 129
           G                            +GF             +G   +VGRIKD++I
Sbjct: 442 G---------------------------DLGFIS-----------EGELFIVGRIKDLLI 463

Query: 130 RGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
             G N YP +IE  IQ  T   V    A  VPD+   + V I I+LK+  
Sbjct: 464 VDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509

Length = 578

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 42/168 (25%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHC---NMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
           +  +V+D     +  G  G ++I+       +L  W D+                R+KK 
Sbjct: 410 YDVQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDD---------------ERFKKL 454

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFF--YSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
                                     F  Y    D     EDGY  V+GR  D+I   G 
Sbjct: 455 YL----------------------NKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGH 492

Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
            +   E+EE +  HP+V E    GV DE  G+     + LK++ K++A
Sbjct: 493 RLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDA 540

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 41/158 (25%), Positives = 60/158 (37%), Gaps = 40/158 (25%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIR-GHCNML-GYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           +A +VD     +P    G L I+ G  +M+ G W + +K +     D W  +G       
Sbjct: 386 EAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGD-WYVSGD------ 438

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
             SA                              + EDGY    GR+ D+I   GE + P
Sbjct: 439 --SAY-----------------------------MDEDGYFWFQGRVDDVIKTSGERVGP 467

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 175
            E+E  +  HP V EA   G PD   GE +   + L+ 
Sbjct: 468 FEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRP 505

Length = 570

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 404 EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 452
           EDG+  +  R KD+I+  GG+NI P+ IE  ++  P + +A   G  D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 457
           DGY  + GR KD+II  G NI+P++IE   +  P +   +A A+ +  E  GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504

Length = 579

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 42/125 (33%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + +VVD + +++P    G + +RG     GY             D WL TG         
Sbjct: 370 EVRVVDEDGQVLPPRGVGVIELRGESVTPGY-LTMDGFIPAQDADGWLDTG--------- 419

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVV--GRIKDMIIRGGENIYP 137
                              +G+                G+VV  GR+KD+II  G NIYP
Sbjct: 420 ------------------DLGYL------------TEEGEVVVCGRVKDVIIMAGRNIYP 449

Query: 138 KEIEE 142
            +IE 
Sbjct: 450 TDIER 454

Length = 545

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           E G    +GR+ D+I   G N+YP E+E+ +   P V EA  Y   D   GE V
Sbjct: 303 ERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERV 356

Length = 414

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY   VGR  D+I   G  + P E+E  +  HP V EA   G PD   GE V   + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391

Query: 464 KENAKLNAD---DIRTFCKGKVS 483
           +   + + +   ++ TF + ++ 
Sbjct: 392 RPGFEPSEELRRELLTFARQRLG 414

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
            DGY    GR+ D +   GEN+    IE  +  +P+  E   Y VPD  +G++V  ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452

Query: 174 KENAKLNA 181
              AK + 
Sbjct: 453 APGAKFDP 460

Length = 529

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 25/80 (31%), Positives = 38/80 (47%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  V+  DG+ ++  R KD+II GGENI   E+E  +  +P VLE     +P    GE  
Sbjct: 426 DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETP 485

Query: 458 GISIKLKENAKLNADDIRTF 477
              + L++      D +   
Sbjct: 486 CAFVVLEKGETTKEDRVDKL 505

Length = 579

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  V+GR  D+I   G  +   E+EE +  HP+V E    GV DE  G+     + L
Sbjct: 473 EDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVL 532

Query: 464 KENAKLNADDIRT 476
           K++ K++AD +  
Sbjct: 533 KDDCKIDADQLEN 545

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 32/147 (21%), Positives = 48/147 (32%), Gaps = 38/147 (25%)

Query: 13  TLSSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGR 71
             +S   + +  D  +  ++P G  GE+ IR    M GY ++   T   +  D + RTG 
Sbjct: 353 RPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTG- 411

Query: 72  YKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRG 131
                                               D    R DG      R+ D +  G
Sbjct: 412 ------------------------------------DLGYTRGDGQFVYQTRMGDSLRLG 435

Query: 132 GENIYPKEIEEFIQTHPNVLEAYAYGV 158
           G  + P EIE  ++  P V  A   G 
Sbjct: 436 GFLVNPAEIEHALEALPGVAAAQVVGA 462

Length = 540

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GEE 456
           D       GY   V R+ D     GEN+   E+EE +  HP V EA  YGV      G  
Sbjct: 324 DLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRA 383

Query: 457 VGISIKLKENAKLNAD 472
              ++ L   A  +  
Sbjct: 384 GMAALTLAPGAAFDPQ 399

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 20/110 (18%)

Query: 361 WPNSM-----DSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIK 415
           WP SM     ++  +   Y+ Y   +  ++  DSA             EDGY    GR+ 
Sbjct: 411 WP-SMMRGIWNNPEK---YESYFAGDWYVS-GDSAYMD----------EDGYFWFQGRVD 455

Query: 416 DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 465
           D+I   GE + P E+E  +  HP V EA   G PD   GE +   + L+ 
Sbjct: 456 DVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRP 505

Length = 570

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 41/162 (25%), Positives = 54/162 (33%), Gaps = 47/162 (29%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
              ++D   + VP G PGEL + G    LGY    + T E   PD +    R  +T    
Sbjct: 307 TVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRT---- 362

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIYPK 138
                               G       D    R DG  + +GRI   + IR G  I   
Sbjct: 363 --------------------G-------DLARWRPDGNIEFLGRIDRQVKIR-GFRIELG 394

Query: 139 EIEEFIQTHPNVLEAY--------------AYGVPDERMGEE 166
           EIE+ +  HP V EA               AY V    +   
Sbjct: 395 EIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAA 436

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 398 DQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG--------- 447
           D   L EDGY  + GR K++I    G+NI P+ IE  +   P + +    G         
Sbjct: 455 DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVAL 514

Query: 448 -VPDERMGEEVGISIKLKENA 467
            VPD    E+   S+    +A
Sbjct: 515 IVPDFDALEKWAESLNKVISA 535

Length = 613

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
            DG+    GR  D +   GEN+    IE  +  HP +     Y VPDER+G++V  ++ L
Sbjct: 392 ADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVL 451

Query: 464 KENAKLNADDIRTF 477
           ++ A  + D    F
Sbjct: 452 RDGATFDPDAFAAF 465

Length = 540

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 25/80 (31%), Positives = 40/80 (50%)

Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
           DG+ Q+  R KD+I  GGE I   +IE     HP V EA        +  E   + +  +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481

Query: 465 ENAKLNADDIRTFCKGKVSK 484
             A++  +++  F +GKV+K
Sbjct: 482 PGAEVTREELLAFYEGKVAK 501

Length = 539

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 48/163 (29%)

Query: 21  AKVVDHNNRIVPFGTPGELLIR----GHCNM-LGYWEDEQKTKETIGPDRWLRT--GRYK 73
           A VVD + R V  G  GEL++R    G   M  G+W D         P+R+L T   R+ 
Sbjct: 288 ADVVDEDGRPVR-GEVGELVVRAPWPG---MTRGFWRD---------PERYLETYWSRFP 334

Query: 74  KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
                                     G +     D  ++ EDGY  ++GR  D I   G+
Sbjct: 335 --------------------------GVWVH--GDWALVDEDGYWYILGRSDDTIKVAGK 366

Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN 176
            + P EIE  + +HP V EA A GVPD   GE +   + LK  
Sbjct: 367 RVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPG 409

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E+G+   VGR  +MI   G  + P E+EE       V EA A+GVPD  +G+ + + +  
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
               +L+   +   C+ ++  +
Sbjct: 468 PGGEELDRAALLAECRARLPNY 489

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  ++GR  D I   G+ + P EIE  + +HP V EA A GVPD   GE +   + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406

Query: 464 KENAKLNADDIRT 476
           K     +A     
Sbjct: 407 KPGVTPSAALEAE 419

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 398 DQFVLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
           D  V+  DG  ++VGR   D+I  GG  I   EIE  +  HP V EA   GVPD+ +G+ 
Sbjct: 356 DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 457 V 457
           +
Sbjct: 416 I 416

Length = 471

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 35/137 (25%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG--RYKKTSF 77
           QA V+D + + VP G PGEL I G     GY    + T E   P+ +  +   R  +T  
Sbjct: 278 QAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGD 337

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMI-IRGGENIY 136
           L     +RR                          R DG  + +GRI D + +R G  I 
Sbjct: 338 L-----VRR--------------------------RADGQLEYLGRIDDQVKVR-GFRIE 365

Query: 137 PKEIEEFIQTHPNVLEA 153
             EIE  +++ P V EA
Sbjct: 366 LGEIEAALRSIPGVAEA 382

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 436
           Y  +EE     D  G  +   D   + +DG   +V RIK++I   G  + P E+E  + T
Sbjct: 403 YNNKEETDRTIDEDGW-LHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLT 461

Query: 437 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
           HP+V +A    +PDE  GE     + +   AK + +DI  F    V+ +
Sbjct: 462 HPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHY 510

Length = 546

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D+ ++ EDGY   VGR  D+I   G  I P E+E  +  HP V+E+     PD   GE V
Sbjct: 408 DRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
           G ++S   D      DG+    GR  D +   GEN+    IE  +  HP +     Y VP
Sbjct: 380 GMYWS--GDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVP 437

Query: 160 DERMGEEVGISIKLKENAKL 179
           DER+G++V  ++ L++ A  
Sbjct: 438 DERVGDQVMAALVLRDGATF 457

Length = 540

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)

Query: 406 GY----GQVV--GRIKDMIIRGGENIYPKEIEE 432
           GY    G+VV  GR+KD+II  G NIYP +IE 
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454

Length = 545

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
            DG+  +  R +D+I  GGE IY  ++E +I   P V+E    G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493

Length = 576

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 455
            DG+  +  R +D+I  GGE IY  ++E +I   P V+E    G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493

Length = 576

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
            Q  ++D   R +P G PGEL I G    LGY      T E     R  RTG
Sbjct: 550 TQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTG 601

Length = 642

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 460
            +G   + GR KD+II  G+N YP +IE   +    +      A GV DE+   EEV I 
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439

Query: 461 IKLKENAK 468
           ++ +++  
Sbjct: 440 VEYRQSLD 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  ++GR  D+I   G  +  +EIEE + +HP+V E    GV DE  G+   +   L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543

Query: 464 KENAKLNADDIR 475
           KE+         
Sbjct: 544 KESDSAGDAHDP 555

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 462
           EDGY  +V R+K++I   G  I P ++E  + +HP +++A    VPD+  GE  V   ++
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVR 501

Query: 463 LKENAKLNADDIRTFCKGKVSKF 485
            ++ + L+ + +  +   +V+ +
Sbjct: 502 -RQGSTLSQEAVINYVAKQVAPY 523

Length = 560

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           +DGY  + GR+ D+I   G  +   EIE  + +HP V EA   G+PD+  G+ +   + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546

Query: 464 KENAKLNAD 472
           K+  + + +
Sbjct: 547 KDGYEPDDE 555

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
           YS   D  +   DGY  ++GR  D+I   G  +  +EIEE I +HP V E    GV D  
Sbjct: 475 YS-TFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDAL 533

Query: 163 MGE 165
            G+
Sbjct: 534 KGQ 536

Length = 629

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
           EDGY  ++GR  D+I   G  +  +EIEE + +HP+V E    GV DE  G+   +   L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543

Query: 174 KENAKL 179
           KE+   
Sbjct: 544 KESDSA 549

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 455
            DGY  ++GR  D+I   G  +  +EIEE I +HP V E    GV D   G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536

Length = 629

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
           GFF +   D   +   GY ++  R KD+I  GGE I   ++E     HP V EA   GV 
Sbjct: 410 GFFDT--GDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVY 467

Query: 160 DERMGEEVGISIKLKE 175
             +  E   + ++LK 
Sbjct: 468 HPKWDERPLLIVQLKP 483

Length = 542

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
           +DGY  + GR+ D+I   G  +   EIE  + +HP V EA   G+PD+  G+ +   + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546

Query: 174 KENA 177
           K+  
Sbjct: 547 KDGY 550

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 43/105 (40%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+ IRG   M GY          I PD W  TG                          
Sbjct: 373 GEIEIRGASMMSGYLGQA-----PIDPDDWFPTG-------------------------- 401

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
             +G+   LV    V        V GR K++I   G NI+P EIE
Sbjct: 402 -DLGY---LVDGGLV--------VCGRAKELITVAGRNIFPTEIE 434

Length = 525

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 47/141 (33%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETI---GPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ 93
           GE+   G     GYW + + + +T        WLRTG                       
Sbjct: 398 GEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTG----------------------- 434

Query: 94  QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL-- 151
                +GF             DG   V GR+KDM+I  G N+YP++IE+ ++    V+  
Sbjct: 435 ----DLGF-----------LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRK 479

Query: 152 -EAYAYGVPDERMGEEVGISI 171
               A+ V  +  GEE GI I
Sbjct: 480 GRVAAFAVNHQ--GEE-GIGI 497

Length = 4334

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 46.0 bits (110), Expect = 4e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 173
           EDGY  ++GR+ D+I   G  +   E+E  + +HP V EA   G PDE  GE +   + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534

Query: 174 KENAK 178
           K+  +
Sbjct: 535 KDGVE 539

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 46.0 bits (110), Expect = 4e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  ++GR+ D+I   G  +   E+E  + +HP V EA   G PDE  GE +   + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534

Query: 464 KENAK 468
           K+  +
Sbjct: 535 KDGVE 539

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 61/169 (36%)

Query: 21  AKVVDHNNRI-VPFGTPGELLIRGHCNM-LGYWEDEQKTKETI---------------GP 63
           A +VD      +P G  GE+ + G+ N+  GYW   ++T  T                 P
Sbjct: 402 AVIVDPETASELPDGQIGEIWLHGN-NIGTGYWGKPEETAATFQNILKSRLSESHAEGAP 460

Query: 64  D--RWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVV 121
           D   W+RTG Y                           G ++           DG   + 
Sbjct: 461 DDALWVRTGDY---------------------------GVYF-----------DGELYIT 482

Query: 122 GRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAY--AYGVPDERMGEEV 167
           GR+KD++I  G N YP+++E   Q     +   Y  A+ VP  ++ + V
Sbjct: 483 GRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVV 531

Length = 631

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 467
           +VGRIKD++I  G N YP +IE  IQ  T   V    A  VPD+   + V I I+LK+  
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509

Query: 468 KLNADDIRTFC 478
             + + +    
Sbjct: 510 DSDEEAMDRLR 520

Length = 578

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 23/54 (42%), Positives = 29/54 (53%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 451
           D++V  +DG     GR  DM+   G  + P EIE  +  HP VLEA   GV DE
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 408 GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 456
           G++   GR KDMII  G N Y  EIE  ++  P V  ++  A  V D   G +
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 115 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP----DER 162
           DG+ Q+  R KD+I  GGE I   +IE     HP V EA          DER
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDER 473

Length = 539

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 43/172 (25%), Positives = 61/172 (35%), Gaps = 60/172 (34%)

Query: 18  SFQAKVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-------------- 62
           S  A +VD +    +P G  GE+ + G     GYW   ++T+ T G              
Sbjct: 410 SQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHAD 469

Query: 63  --PD--RWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYG 118
              D   WLRTG                            +G +            DG  
Sbjct: 470 GAADDGTWLRTG---------------------------DLGVYL-----------DGEL 491

Query: 119 QVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 167
            + GRI D+I+  G N YP++IE  + +  P V   Y  A+ VP E     V
Sbjct: 492 YITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543

Length = 612

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 41/140 (29%)

Query: 31  VPFGTPGELLIRGHCNMLGYWEDEQKTKE-TIGPDRWLRTGRYKKTSFLYSAMAIRRKLK 89
           +P G  G LL+RG   M GY  +E+KT E  +  D W  TG                   
Sbjct: 333 LPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTG------------------- 373

Query: 90  PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP- 148
                             D   + EDG+  +VGR+K     GGE +    +EE +     
Sbjct: 374 ------------------DIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILP 415

Query: 149 -NVLEAYAYGVPDERMGEEV 167
            + L A A  VPDE+ GE++
Sbjct: 416 EDSLHA-AVEVPDEKKGEKI 434

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAY 446
            GR+           DG   V GR+KDM+I  G N+YP++IE+ ++    V+      A+
Sbjct: 426 DGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAF 485

Query: 447 GVPDERMGEEVGISI 461
            V  +  GEE GI I
Sbjct: 486 AVNHQ--GEE-GIGI 497

Length = 4334

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
             EDGY   VGR  D+       I P E+E  +  HP V EA     PD          I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377

Query: 462 KLKENAKLNAD---DIRTFCKGKVSKF 485
            LK   + + +   ++    + +++ +
Sbjct: 378 VLKPGYEPSRELALELFAHVRERLAPY 404

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 45/122 (36%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ 96
           GE+L+RG   MLGY  +          D W  TG                          
Sbjct: 305 GEILVRGS-LMLGYLGEPPA------TDDWWATG-------------------------- 331

Query: 97  QQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRG-GENIYPKEIEEFIQTHPNVLEAYA 155
                      D   L E+GY  + GR K++II   G N+ P+ +E  +Q  P + +A  
Sbjct: 332 -----------DLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVV 380

Query: 156 YG 157
           +G
Sbjct: 381 FG 382

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTG 70
           GE+ +RG     GY++DE +T+E I  D WL TG
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTG 492

Length = 651

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 32/140 (22%), Positives = 47/140 (33%), Gaps = 51/140 (36%)

Query: 31  VPFGTPGELLIRGHCNML----GYWEDEQKTKETI------GPDRWLRTGRYKKTSFLYS 80
            P G PGE+L R          GY ++E  T+  +        D W RTG          
Sbjct: 294 APVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGD--------- 344

Query: 81  AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQV--VGRIKDMIIRGGENIYPK 138
                                         +LR+D  G+   + R+ D      EN+   
Sbjct: 345 ------------------------------LLRQDADGRWYFLDRLGDTFRWKSENVSTG 374

Query: 139 EIEEFIQTHPNVLEAYAYGV 158
           E+ + +   P+V EA  YGV
Sbjct: 375 EVADVLGAIPSVAEANVYGV 394

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	485
KOG1176|consensus	537		100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
KOG1177|consensus	596		100.0
PRK05691	4334	peptide synthase; Validated	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK05691	4334	peptide synthase; Validated	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	99.98
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.98
PRK07787	471	acyl-CoA synthetase; Validated	99.98
PRK12583	558	acyl-CoA synthetase; Provisional	99.98
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.98
PLN02330	546	4-coumarate--CoA ligase-like 1	99.98
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.98
PRK07514	504	malonyl-CoA synthase; Validated	99.98
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.97
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.97
PRK07470	528	acyl-CoA synthetase; Validated	99.97
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.97
PRK07867	529	acyl-CoA synthetase; Validated	99.97
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.97
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK08315	559	AMP-binding domain protein; Validated	99.97
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.97
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.97
PRK08316	523	acyl-CoA synthetase; Validated	99.97
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PRK13383	516	acyl-CoA synthetase; Provisional	99.97
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.97
KOG1256|consensus	691		99.97
PRK06178	567	acyl-CoA synthetase; Validated	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.97
PRK06188	524	acyl-CoA synthetase; Validated	99.97
KOG1175|consensus	626		99.97
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PLN03102	579	acyl-activating enzyme; Provisional	99.97
PRK13388	540	acyl-CoA synthetase; Provisional	99.97
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.97
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.97
PRK13390	501	acyl-CoA synthetase; Provisional	99.97
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.97
PRK05857	540	acyl-CoA synthetase; Validated	99.97
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.97
PTZ00216	700	acyl-CoA synthetase; Provisional	99.97
PRK12316	5163	peptide synthase; Provisional	99.97
PRK06164	540	acyl-CoA synthetase; Validated	99.97
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.97
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.97
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.97
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.97
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.97
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.97
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.97
PLN03052	728	acetate--CoA ligase; Provisional	99.97
PRK12467	3956	peptide synthase; Provisional	99.97
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.96
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.96
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.96
PRK09192	579	acyl-CoA synthetase; Validated	99.96
KOG1176|consensus	537		99.96
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.96
PLN02479	567	acetate-CoA ligase	99.96
PRK12582	624	acyl-CoA synthetase; Provisional	99.96
PRK13391	511	acyl-CoA synthetase; Provisional	99.96
PRK08162	545	acyl-CoA synthetase; Validated	99.96
PRK07868	994	acyl-CoA synthetase; Validated	99.96
PRK08308	414	acyl-CoA synthetase; Validated	99.96
PRK05850	578	acyl-CoA synthetase; Validated	99.95
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.95
KOG1177|consensus	596		99.95
PRK07798	533	acyl-CoA synthetase; Validated	99.95
KOG1180|consensus	678		99.95
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.95
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.93
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.92
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.92
KOG1179|consensus	649		99.92
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.91
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.91
PLN02614	666	long-chain acyl-CoA synthetase	99.91
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.9
PLN02654	666	acetate-CoA ligase	99.9
PLN02736	651	long-chain acyl-CoA synthetase	99.9
PLN02574	560	4-coumarate--CoA ligase-like	99.9
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.89
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.89
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.89
PRK00174	637	acetyl-CoA synthetase; Provisional	99.89
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.89
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.88
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.88
PLN03051	499	acyl-activating enzyme; Provisional	99.88
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.88
PRK07529	632	AMP-binding domain protein; Validated	99.88
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.87
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.87
PRK09088	488	acyl-CoA synthetase; Validated	99.87
PTZ00342	746	acyl-CoA synthetase; Provisional	99.87
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.87
PRK07788	549	acyl-CoA synthetase; Validated	99.87
PRK06839	496	acyl-CoA synthetase; Validated	99.87
PLN02246	537	4-coumarate--CoA ligase	99.87
KOG1256|consensus	691		99.87
PRK09274	552	peptide synthase; Provisional	99.87
PRK05852	534	acyl-CoA synthetase; Validated	99.87
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.87
PRK04319	570	acetyl-CoA synthetase; Provisional	99.87
PLN02860	563	o-succinylbenzoate-CoA ligase	99.86
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.86
KOG1175|consensus	626		99.86
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.86
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.86
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.86
PRK13382	537	acyl-CoA synthetase; Provisional	99.86
PTZ00216	700	acyl-CoA synthetase; Provisional	99.86
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.86
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.86
PRK06145	497	acyl-CoA synthetase; Validated	99.86
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.86
PRK07514	504	malonyl-CoA synthase; Validated	99.86
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.85
PLN02330	546	4-coumarate--CoA ligase-like 1	99.85
PRK06060	705	acyl-CoA synthetase; Validated	99.85
PRK13390	501	acyl-CoA synthetase; Provisional	99.85
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.85
PRK07638	487	acyl-CoA synthetase; Validated	99.85
PRK06178	567	acyl-CoA synthetase; Validated	99.85
PRK08315	559	AMP-binding domain protein; Validated	99.85
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.85
PRK07470	528	acyl-CoA synthetase; Validated	99.84
PRK07787	471	acyl-CoA synthetase; Validated	99.84
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.84
PRK06164	540	acyl-CoA synthetase; Validated	99.84
PRK12583	558	acyl-CoA synthetase; Provisional	99.84
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.84
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.84
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.84
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.83
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.83
PRK07867	529	acyl-CoA synthetase; Validated	99.83
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.83
PRK05857	540	acyl-CoA synthetase; Validated	99.83
KOG1180|consensus	678		99.83
PRK13388	540	acyl-CoA synthetase; Provisional	99.83
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.83
PRK06188	524	acyl-CoA synthetase; Validated	99.83
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.83
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.82
PRK08316	523	acyl-CoA synthetase; Validated	99.82
PRK13383	516	acyl-CoA synthetase; Provisional	99.82
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.82
PLN03102	579	acyl-activating enzyme; Provisional	99.82
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.82
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.82
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.81
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.81
PRK09192	579	acyl-CoA synthetase; Validated	99.81
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.81
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.81
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.81
PRK13391	511	acyl-CoA synthetase; Provisional	99.81
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.81
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.8
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.8
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.8
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.79
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.79
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.79
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.79
PLN02479	567	acetate-CoA ligase	99.78
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.78
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.78
PRK08162	545	acyl-CoA synthetase; Validated	99.78
PLN03052	728	acetate--CoA ligase; Provisional	99.77
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.77
PRK05850	578	acyl-CoA synthetase; Validated	99.77
PRK07868	994	acyl-CoA synthetase; Validated	99.77
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.77
PRK12582	624	acyl-CoA synthetase; Provisional	99.76
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.76
PRK07798	533	acyl-CoA synthetase; Validated	99.76
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.74
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.73
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.72
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.72
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.68
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.67
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.66
PRK09188	365	serine/threonine protein kinase; Provisional	99.61
PRK08308	414	acyl-CoA synthetase; Validated	99.59
PTZ00297	1452	pantothenate kinase; Provisional	99.57
KOG1179|consensus	649		99.53
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.5
PRK09188	365	serine/threonine protein kinase; Provisional	99.44
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.42
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.4
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.19
PTZ00297	1452	pantothenate kinase; Provisional	99.1
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.06
KOG1178|consensus	1032		99.04
KOG3628|consensus	1363		98.95
KOG1178|consensus	1032		98.6
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.58
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.49
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	98.27
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.11
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.05
KOG3628|consensus	1363		97.88
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	96.39
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.31
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	95.96
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	94.71
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	93.85
PLN02249	597	indole-3-acetic acid-amido synthetase	92.08
PLN02249	597	indole-3-acetic acid-amido synthetase	90.9
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	87.61
PLN02620	612	indole-3-acetic acid-amido synthetase	86.46
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	83.98
PLN02247	606	indole-3-acetic acid-amido synthetase	83.19

>KOG1176|consensus

Probab=100.00  E-value=6.5e-45  Score=384.96  Aligned_cols=254  Identities=21%  Similarity=0.200  Sum_probs=221.5

Q ss_pred             ccccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhhh--------------
Q psy5016         222 SYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLSS--------------  286 (485)
Q Consensus       222 ~~l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~~--------------  286 (485)
                      ...+.++.+.++|||||||.||+++++|++..............+..+...+. |+||++|.....              
T Consensus       179 ~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~  258 (537)
T KOG1176|consen  179 RPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLR  258 (537)
T ss_pred             ccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECC
Confidence            33445777888999999999999999999888887766666666643433333 999999887100              


Q ss_pred             ----------------------------------------------hccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         287 ----------------------------------------------EYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       287 ----------------------------------------------l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                                                    +++|+++++++.+.+.++++.   ..+.++||||
T Consensus       259 ~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~---~~v~q~YGmT  335 (537)
T KOG1176|consen  259 KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPN---VTVIQGYGMT  335 (537)
T ss_pred             CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCC---ceEEEeeccc
Confidence                                                          189999999999999999983   5567999999


Q ss_pred             CCCC----CCccC-ccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016         321 EKMF----KDVKN-YLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       321 Et~~----~~~~~-~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      |++.    ....+ .+++|+|++++++++.| ++ +..+++++.||||++|+   ++|.||| ||++|++.|   +++| 
T Consensus       336 E~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~---~imkGY~~NpeaT~~~~---~~~G-  408 (537)
T KOG1176|consen  336 EAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGP---QVMKGYLKNPEATKEAF---DDDG-  408 (537)
T ss_pred             cccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCceEEEEECc---ccchhhcCChHHHHhhc---ccCC-
Confidence            9751    22222 48999999999999999 44 77799999999999999   9999999 999999998   5568 


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD  472 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  472 (485)
                      ||+|||+|++|+||+|||++|.+|+||++|++|+|.|||++|.+||.|.||||||.||+..||.++||||++++..++.+
T Consensus       409 W~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~  488 (537)
T KOG1176|consen  409 WFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEK  488 (537)
T ss_pred             ccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q psy5016         473 DIRTFCKGKVSKF  485 (485)
Q Consensus       473 ~l~~~l~~~l~~y  485 (485)
                      +|.++|+++|++|
T Consensus       489 di~~~v~k~l~~y  501 (537)
T KOG1176|consen  489 DIIEYVRKKLPAY  501 (537)
T ss_pred             HHHHHHHhhCChh
Confidence            9999999999975

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-40  Score=428.87  Aligned_cols=243  Identities=14%  Similarity=0.033  Sum_probs=192.3

Q ss_pred             cceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhh--------------------------
Q psy5016         230 FPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAK--------------------------  282 (485)
Q Consensus       230 l~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~--------------------------  282 (485)
                      +.++|||||||.||+++++|.+.........+.++++..+..... |+.+....                          
T Consensus      3199 ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~ 3278 (5163)
T PRK12316       3199 AYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPAL 3278 (5163)
T ss_pred             EEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHH
Confidence            457999999999999999999988877776666655422211111 11111000                          


Q ss_pred             ------------------Hh----------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC---
Q psy5016         283 ------------------TL----------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK---  325 (485)
Q Consensus       283 ------------------~~----------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~---  325 (485)
                                        .+                ..++||+++++++.+.+..  +    ..++|.||+|||+..   
T Consensus      3279 l~~~~~~~~v~~~~~~ps~~~~l~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~--~----~~l~n~YG~TE~~~~~~~ 3352 (5163)
T PRK12316       3279 LVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVFA--G----LPLYNLYGPTEATITVTH 3352 (5163)
T ss_pred             HHHHHHHcCCcEEEcCHHHHHHHHhccccccCCcceEEEEccccCCHHHHHHHHh--C----CcEeeccCCCccEeeEeE
Confidence                              00                0128999999999999873  2    336899999997531   


Q ss_pred             ---CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc--CCCCCeEecC
Q psy5016         326 ---DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP--DSAGRSIFEK  397 (485)
Q Consensus       326 ---~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~--~~~g~~~~TG  397 (485)
                         ........++|+|+++++++| |+ +..+|+|.+|||+|+|+   .+++||+ +++.|++.|...  ..+++||+||
T Consensus      3353 ~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TG 3429 (5163)
T PRK12316       3353 WQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGALGELYLGGE---GLARGYHNRPGLTAERFVPDPFVPGERLYRTG 3429 (5163)
T ss_pred             EeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCCceEEeccc---ccchhcCCChhhchhhCCCCCCCCCCeeEecC
Confidence               112334678999999999999 65 67799999999999999   9999999 899998888321  1234599999


Q ss_pred             ceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHH
Q psy5016         398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF  477 (485)
Q Consensus       398 D~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~  477 (485)
                      |+|++++||+|+|+||+|++||++|++|+|.|||++|.+||+|.+|+|++..    ++.++|+|++.++.....++|+++
T Consensus      3430 Dl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~l~~~~~V~~a~v~~~~----~~~l~a~vv~~~~~~~~~~~l~~~ 3505 (5163)
T PRK12316       3430 DLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVPEDEAGDLREALKAH 3505 (5163)
T ss_pred             ceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHHHHhCCCcceEEEEEcc----CCeEEEEEEcCCcCcccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875    568999999876655667889999


Q ss_pred             HHhhCCCC
Q psy5016         478 CKGKVSKF  485 (485)
Q Consensus       478 l~~~l~~y  485 (485)
                      |+++|++|
T Consensus      3506 l~~~Lp~y 3513 (5163)
T PRK12316       3506 LKASLPEY 3513 (5163)
T ss_pred             HHhhCCcc
Confidence            99999987

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2e-39  Score=411.72  Aligned_cols=249  Identities=12%  Similarity=0.005  Sum_probs=195.2

Q ss_pred             cceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH-------------------------
Q psy5016         230 FPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT-------------------------  283 (485)
Q Consensus       230 l~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~-------------------------  283 (485)
                      +.++|||||||.||+++++|.+.........+.++++..+..... |+.|.++..                         
T Consensus      1721 ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~ 1800 (3956)
T PRK12467       1721 AYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQ 1800 (3956)
T ss_pred             EEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHH
Confidence            457999999999999999999988877776666665522211111 333322110                         


Q ss_pred             ----------------------h--------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-
Q psy5016         284 ----------------------L--------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-  326 (485)
Q Consensus       284 ----------------------~--------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-  326 (485)
                                            +              ..++||+++++++.+.+.+.++.   ..++|.||+||++... 
T Consensus      1801 l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~t~~~t 1877 (3956)
T PRK12467       1801 LIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEVEALRPWLERLPD---TGLFNLYGPTETAVDVT 1877 (3956)
T ss_pred             HHHHHHHcCCeEEECCHHHHHHHHhhccccccCCCceEEEEccccCCHHHHHHHHHhCCC---CeEEeCccCCcCEEeEE
Confidence                                  0              01289999999999999888763   3468999999975211 


Q ss_pred             --------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc---CCCCC
Q psy5016         327 --------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP---DSAGR  392 (485)
Q Consensus       327 --------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~---~~~g~  392 (485)
                              .......++|+|+++++++| |+ +..+|.|.+|||+|+|+   ++++||+ +++.|++.|...   ..+++
T Consensus      1878 ~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~GEl~i~G~---~v~~GYl~~p~~t~~~f~~~p~~~~~~r 1954 (3956)
T PRK12467       1878 HWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGV---GLARGYLNRPALTAERFVADPFGTVGSR 1954 (3956)
T ss_pred             EEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEeccc---cccccccCChhhhhhhCcCCCCCCCCcc
Confidence                    11223568999999999999 65 67799999999999999   9999999 889898887321   12345


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC---
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL---  469 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~---  469 (485)
                      ||+|||++++++||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+ ...++.+++||+..++...   
T Consensus      1955 ~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~ 2033 (3956)
T PRK12467       1955 LYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDD 2033 (3956)
T ss_pred             ceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCccccccc
Confidence            999999999999999999999999999999999999999999999999999999987 4467789999998654321   


Q ss_pred             -----CHHHHHHHHHhhCCCC
Q psy5016         470 -----NADDIRTFCKGKVSKF  485 (485)
Q Consensus       470 -----~~~~l~~~l~~~l~~y  485 (485)
                           ..++|+++++++|++|
T Consensus      2034 ~~~~~~~~~l~~~l~~~Lp~y 2054 (3956)
T PRK12467       2034 EAQVALRAILKNHLKASLPEY 2054 (3956)
T ss_pred             ccccccHHHHHHHHHhhCchh
Confidence                 3468999999999876

>KOG1177|consensus

Probab=100.00  E-value=2.4e-40  Score=330.76  Aligned_cols=258  Identities=24%  Similarity=0.361  Sum_probs=225.5

Q ss_pred             cCCCCccccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh--hccchhhhHhhhh-------
Q psy5016         217 YDPNQSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE--KSMQGWAKTLSSE-------  287 (485)
Q Consensus       217 ~~~~~~~l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~--pl~~~~~~~~~~l-------  287 (485)
                      +.....+.+.+..+++.|||||||.||.+.++|.+..+++.....++++.. ..+.|.  |+||++|..+..+       
T Consensus       224 l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e-~~~i~~~~Pl~H~~G~~~~~ma~l~~ga  302 (596)
T KOG1177|consen  224 LADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNE-KHRICIPNPLYHCFGCVLGVMAALMHGA  302 (596)
T ss_pred             HHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCc-ceEEEecCchHHHHHHHHHHHHHHHhCc
Confidence            333456677788899999999999999999999999999999999999995 444444  9999999762222       


Q ss_pred             ------------------------------------------------------ccCCCCCHHHHHHHHhhhhhcccCcc
Q psy5016         288 ------------------------------------------------------YNSYAGPVTLRRNLIDPLEIVQNRID  313 (485)
Q Consensus       288 ------------------------------------------------------~~g~~~~~~l~~~~~~~~~~~~~~~i  313 (485)
                                                                            .||+++|+++.+.+...+..   ..+
T Consensus       303 t~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m---~~i  379 (596)
T KOG1177|consen  303 TIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNM---KDI  379 (596)
T ss_pred             EEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCc---eee
Confidence                                                                  89999999999999887663   445


Q ss_pred             ccccccCCCCC-------CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccc
Q psy5016         314 DVEYEFQEKMF-------KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEEN  383 (485)
Q Consensus       314 ~~~YG~TEt~~-------~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~  383 (485)
                      ...||+|||++       .+.......|+|+.+++.+..| |. +..++.|..||||+||+   +.|.||| +++.|.+.
T Consensus       380 ~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY---~tMl~Ywg~~~kT~et  456 (596)
T KOG1177|consen  380 AVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTKGELLIRGY---STMLGYWGEEEKTKET  456 (596)
T ss_pred             EEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCCceEEEEec---hhheeecCCcccchhh
Confidence            67899999862       4445566779999999999999 64 67789999999999999   9999999 88888887


Q ss_pred             ccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEE
Q psy5016         384 ITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  463 (485)
Q Consensus       384 ~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~  463 (485)
                      .   +.| +||+|||++.+||+|+++|+||.+|+|+.+|+||+|.|||+.|.+||.|.++.||+++|...||.++|+|-+
T Consensus       457 i---~~d-rW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRL  532 (596)
T KOG1177|consen  457 I---GND-RWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRL  532 (596)
T ss_pred             c---ccc-cceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEe
Confidence            7   344 499999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC--CCHHHHHHHHHhhCCCC
Q psy5016         464 KENAK--LNADDIRTFCKGKVSKF  485 (485)
Q Consensus       464 ~~~~~--~~~~~l~~~l~~~l~~y  485 (485)
                      +++..  .++++|.++|+.+|+.|
T Consensus       533 qe~~e~~~t~E~lKa~Ck~klaHF  556 (596)
T KOG1177|consen  533 QEGAEGKTTAETLKAMCKGKLAHF  556 (596)
T ss_pred             eccccccccHHHHHHHHhcccccc
Confidence            98764  58899999999998876

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=7.4e-38  Score=400.43  Aligned_cols=249  Identities=13%  Similarity=0.046  Sum_probs=190.2

Q ss_pred             cceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccch-----------------------------
Q psy5016         230 FPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQG-----------------------------  279 (485)
Q Consensus       230 l~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~-----------------------------  279 (485)
                      +.++|||||||.||+++++|...........+.++++..+..... ++.+.                             
T Consensus      2336 a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~~~~~l 2415 (4334)
T PRK05691       2336 AYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEI 2415 (4334)
T ss_pred             EEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEECCcccCCHHHH
Confidence            456899999999999999999887766665555554421111100 11110                             


Q ss_pred             --------------hhhH----------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC---
Q psy5016         280 --------------WAKT----------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK---  325 (485)
Q Consensus       280 --------------~~~~----------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~---  325 (485)
                                    ....                + ..++||+++++++.+++.+.++.   ..++|.||+||++..   
T Consensus      2416 ~~~i~~~~vt~~~~tPs~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~~~ 2492 (4334)
T PRK05691       2416 CQLIREQQVSILGFTPSYGSQLAQWLAGQGEQLPVRMCITGGEALTGEHLQRIRQAFAP---QLFFNAYGPTETVVMPLA 2492 (4334)
T ss_pred             HHHHHHcCCeEEEcCHHHHHHHHHhhhccccCCCceEEEEccccCCHHHHHHHHHhCCC---ceEEeCcCCCcceEEEEE
Confidence                          0000                0 11389999999999999988763   346799999997421   


Q ss_pred             --C----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc---CCCCCe
Q psy5016         326 --D----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP---DSAGRS  393 (485)
Q Consensus       326 --~----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~---~~~g~~  393 (485)
                        .    .......++|+|++++.++| |+ +..+|.|++|||+|+|+   ++++||+ +++.|++.|...   ..+++|
T Consensus      2493 ~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~GEL~i~G~---~v~~GY~~~~~~t~~~F~~~p~~~~~~r~ 2569 (4334)
T PRK05691       2493 CLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGATGELYVGGA---GLAQGYHDRPGLTAERFVADPFAADGGRL 2569 (4334)
T ss_pred             eecccccccCCCCCccccccCCCEEEEECCCCCCCCCCCceEEEeccc---ccCccccCChhhhhhhccCCCCCCCCCce
Confidence              1    01122346899999999999 65 67799999999999999   9999999 889898887321   123459


Q ss_pred             EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC------
Q psy5016         394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA------  467 (485)
Q Consensus       394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~------  467 (485)
                      |+|||+|++++||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++..++ .++.++++++.....      
T Consensus      2570 y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~~-~~~~lva~vv~~~~~~~~~~~ 2648 (4334)
T PRK05691       2570 YRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDTP-SGKQLAGYLVSAVAGQDDEAQ 2648 (4334)
T ss_pred             EeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeCC-CCcEEEEEEEecccccccccc
Confidence            9999999999999999999999999999999999999999999999999999998543 577899999874321      


Q ss_pred             CCCHHHHHHHHHhhCCCC
Q psy5016         468 KLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       468 ~~~~~~l~~~l~~~l~~y  485 (485)
                      ....++|+++|+++|++|
T Consensus      2649 ~~~~~~l~~~l~~~Lp~y 2666 (4334)
T PRK05691       2649 AALREALKAHLKQQLPDY 2666 (4334)
T ss_pred             cccHHHHHHHHHhhCccc
Confidence            234578999999999987

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-38  Score=342.41  Aligned_cols=252  Identities=25%  Similarity=0.278  Sum_probs=213.1

Q ss_pred             ccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccC--CCcccccchh-hccchhhhHhhh--------------
Q psy5016         224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSD--IDWEYADKCE-KSMQGWAKTLSS--------------  286 (485)
Q Consensus       224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~--~~~~~~~~~~-pl~~~~~~~~~~--------------  286 (485)
                      +...+.+.++|||||||.||.++++|++...+.........  ++..+...+. |+||.+|.....              
T Consensus       168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~  247 (534)
T COG0318         168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS  247 (534)
T ss_pred             CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence            44566778899999999999999999999999888877777  6644433333 999999987110              


Q ss_pred             -------------------------------------------------hccCCCCCHHHHHHHHhhhhhcccCcccccc
Q psy5016         287 -------------------------------------------------EYNSYAGPVTLRRNLIDPLEIVQNRIDDVEY  317 (485)
Q Consensus       287 -------------------------------------------------l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~Y  317 (485)
                                                                       +.||+++++++++.+.++|+.   ..+++.|
T Consensus       248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~---~~i~~~Y  324 (534)
T COG0318         248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGP---IAILEGY  324 (534)
T ss_pred             CCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCC---CceEEee
Confidence                                                             178899999999999999984   2467999


Q ss_pred             ccCCCCC----CCccC--ccccCcccccCCcEEEE-cCC-CCCCCCCceEEEEecCCCCccccccc-CcccccccccccC
Q psy5016         318 EFQEKMF----KDVKN--YLITPALKGLYHFKKWM-NPK-FSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPD  388 (485)
Q Consensus       318 G~TEt~~----~~~~~--~~~~s~G~p~pg~~v~I-d~~-~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~  388 (485)
                      |+|||+.    .....  .+.+++|+|+|+++++| |++ ....+|++|||+++||   +++.||| +++.|++.|   +
T Consensus       325 G~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~vGei~irgp---~v~~GY~~~pe~t~~~f---~  398 (534)
T COG0318         325 GLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGP---NVMKGYWNRPEATAEAF---D  398 (534)
T ss_pred             cccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCCCCceEEEEECc---hhhhhhcCChHHHHHhh---c
Confidence            9999753    11111  36778899999999999 753 3333499999999999   9999999 789998877   3


Q ss_pred             CCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC--
Q psy5016         389 SAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN--  466 (485)
Q Consensus       389 ~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~--  466 (485)
                      .+| ||+|||+|++|++|+++|+||.+|+|+++|+||+|.|||+++.+||.|.+++|++++++..||.++|+|+++++  
T Consensus       399 ~~g-W~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~  477 (534)
T COG0318         399 EDG-WLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD  477 (534)
T ss_pred             cCC-eeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC
Confidence            358 99999999999999999999999999999999999999999999999999999999999999999999999976  


Q ss_pred             CCCCHHHHHHHHHhhCCCC
Q psy5016         467 AKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~y  485 (485)
                      ...+.++|.++|+++++.|
T Consensus       478 ~~~~~~~i~~~~~~~l~~~  496 (534)
T COG0318         478 AELTAEELRAFLRKRLALY  496 (534)
T ss_pred             CCCCHHHHHHHHHhhhhcc
Confidence            3458899999999988875

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=7.1e-37  Score=391.46  Aligned_cols=248  Identities=13%  Similarity=0.039  Sum_probs=195.4

Q ss_pred             ceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------------
Q psy5016         231 PVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------------  283 (485)
Q Consensus       231 ~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------------  283 (485)
                      .++|||||||.||+++++|.............+.++..+..... |+.|..+..                          
T Consensus      1277 ~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l 1356 (4334)
T PRK05691       1277 YVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRI 1356 (4334)
T ss_pred             EEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence            36899999999999999999887776665555555422111111 221111110                          


Q ss_pred             ---------------------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC----
Q psy5016         284 ---------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK----  325 (485)
Q Consensus       284 ---------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~----  325 (485)
                                                       + ..++||+++++++.+.+.+.++.   ..++|.||+||++..    
T Consensus      1357 ~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~~~~ 1433 (4334)
T PRK05691       1357 AELVQQYGVTTLHFVPPLLQLFIDEPLAAACTSLRRLFSGGEALPAELRNRVLQRLPQ---VQLHNRYGPTETAINVTHW 1433 (4334)
T ss_pred             HHHHHHcCCeEEECcHHHHHHHHhCcccccCCcccEEEEeecCCCHHHHHHHHHhCCC---cEEEeCCCcChheeeeeee
Confidence                                             0 01289999999999999888753   456899999997531    


Q ss_pred             --CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc---CCCCCeEecC
Q psy5016         326 --DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP---DSAGRSIFEK  397 (485)
Q Consensus       326 --~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~---~~~g~~~~TG  397 (485)
                        ........++|+|++++.++| |+ +..+|.|.+|||+|+|+   ++++||+ +++.|++.|...   ..+++||+||
T Consensus      1434 ~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~---~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1510 (4334)
T PRK05691       1434 QCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGA---GLARGYLGRPALTAERFVPDPLGEDGARLYRTG 1510 (4334)
T ss_pred             ecccccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCc---ccchhhcCCccccHhhCCCCCCCCCCceEEEcc
Confidence              122344678999999999999 65 67799999999999999   9999999 899998887321   1123599999


Q ss_pred             ceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHH
Q psy5016         398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF  477 (485)
Q Consensus       398 D~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~  477 (485)
                      |++++++||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++..+. .++.++++++..++...+.++|+++
T Consensus      1511 Dl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~~~~l~~~ 1589 (4334)
T PRK05691       1511 DRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAEAERLKAA 1589 (4334)
T ss_pred             ceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999976654 4578999999887766778899999


Q ss_pred             HHhhCCCC
Q psy5016         478 CKGKVSKF  485 (485)
Q Consensus       478 l~~~l~~y  485 (485)
                      |+++|++|
T Consensus      1590 l~~~Lp~y 1597 (4334)
T PRK05691       1590 LAAELPEY 1597 (4334)
T ss_pred             HHHhCccc
Confidence            99999987

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.5e-36  Score=318.26  Aligned_cols=186  Identities=20%  Similarity=0.082  Sum_probs=162.8

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCcc---CccccCcccccCCcEEEE-cC-CCCCCCCCceEEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVK---NYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWP  362 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~---~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v  362 (485)
                      +.|+|++++.++++.+.++    ..+.+.||+||++.....   +.++++.|+|+||+++.| |+ ++.+++|+ |+|++
T Consensus       297 SaGEPLnpe~~~w~~~~~g----~~i~d~~gqTEtg~~~~~~~~~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~-G~Lvi  371 (528)
T COG0365         297 SAGEPLNPEAFEWFYSALG----VWILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAVRRVDDEGNPVPPGV-GELVV  371 (528)
T ss_pred             ccCCCCCHHHHHHHHHHhC----CCEeccccccccCccccCCCCCcCCCCCCCCCCCceeEEECCCCCcCCCCc-eEEEE
Confidence            8899999999999999998    555799999998622111   346777799999999999 54 77789999 99999


Q ss_pred             ecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCcc
Q psy5016         363 NSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL  441 (485)
Q Consensus       363 ~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~  441 (485)
                      +.++| +++++|| |++++.+.+    -+. ||.|||.+++|||||+||+||.||+||+.|++|.|.|||++|.+||.|.
T Consensus       372 ~~~~p-~~~~~~w~d~er~~~~y----~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~Va  445 (528)
T COG0365         372 RLPWP-GMALTYWNDPERYKEAY----FGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVA  445 (528)
T ss_pred             eCCCc-hhhhhhhCCHHHHHHHH----hhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCccee
Confidence            99999 9999999 888888877    445 9999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCCCCcEEEEEEEEcCCCCCC--HHHHHHHHHhhCCC
Q psy5016         442 EAYAYGVPDERMGEEVGISIKLKENAKLN--ADDIRTFCKGKVSK  484 (485)
Q Consensus       442 ea~vv~~~~~~~g~~~~a~vv~~~~~~~~--~~~l~~~l~~~l~~  484 (485)
                      ||+||+.||+..|+.+.|||+++++...+  .++|++++++.+.+
T Consensus       446 EaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~  490 (528)
T COG0365         446 EAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGP  490 (528)
T ss_pred             eeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCc
Confidence            99999999999999999999999987554  24666666666554

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.6e-34  Score=315.88  Aligned_cols=249  Identities=19%  Similarity=0.116  Sum_probs=202.2

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ..+.-+.++|||||||.||.+.++|.+...+.........+...+..++. |++|.++...                   
T Consensus       211 ~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~  290 (632)
T PRK07529        211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQG  290 (632)
T ss_pred             CcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccc
Confidence            34556678999999999999999999887766655555554422222222 6666544320                   


Q ss_pred             ----------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccc
Q psy5016         285 ----------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYE  318 (485)
Q Consensus       285 ----------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG  318 (485)
                                                                    ..++||+++++++.+++.+.++    ..+++.||
T Consensus       291 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g----~~l~~~YG  366 (632)
T PRK07529        291 YRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDGHDISSLRYALCGAAPLPVEVFRRFEAATG----VRIVEGYG  366 (632)
T ss_pred             cCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccCCCccceEEEEEcCCCCCHHHHHHHHHHhC----CcEeeeec
Confidence                                                          0017899999999999998876    45679999


Q ss_pred             cCCCCCCC-----ccCccccCcccccCCcEEEE---cC-C---CCCCCCCceEEEEecCCCCcccccccCcccccccccc
Q psy5016         319 FQEKMFKD-----VKNYLITPALKGLYHFKKWM---NP-K---FSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITV  386 (485)
Q Consensus       319 ~TEt~~~~-----~~~~~~~s~G~p~pg~~v~I---d~-~---~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~  386 (485)
                      +||++...     ......+++|+|+|+++++|   |+ +   ..+++|++|||+|+|+   +++.||++++.+...+  
T Consensus       367 ~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp---~v~~GY~~~~~~~~~~--  441 (632)
T PRK07529        367 LTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGP---NVFSGYLEAAHNKGLW--  441 (632)
T ss_pred             ccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECC---CccccccCCccccccc--
Confidence            99975311     12236789999999999888   44 3   5689999999999999   9999999666666655  


Q ss_pred             cCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         387 PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       387 ~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                       ..+| ||+|||+|++|+||+++|.||.||+||++|.+|+|.|||++|.+||+|.+|+|++.+++..|+.+++||++.++
T Consensus       442 -~~~g-w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~  519 (632)
T PRK07529        442 -LEDG-WLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPG  519 (632)
T ss_pred             -cCCC-ceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCC
Confidence             3567 99999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCHHHHHHHHHhhCCC
Q psy5016         467 AKLNADDIRTFCKGKVSK  484 (485)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~  484 (485)
                      ...+.++|+++|+++|++
T Consensus       520 ~~~~~~~l~~~~~~~l~~  537 (632)
T PRK07529        520 ASATEAELLAFARDHIAE  537 (632)
T ss_pred             CCCCHHHHHHHHHHhcch
Confidence            888889999999998853

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=4.3e-34  Score=315.87  Aligned_cols=194  Identities=15%  Similarity=0.081  Sum_probs=165.1

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVAL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Ge  359 (485)
                      ++|+++++++++++.+.++... ..+.+.||+||++...      ..+.+++++|+|+||++++| |+ +..++.++.||
T Consensus       404 ~~Ge~l~~~~~~~~~~~~g~~~-~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Ge  482 (666)
T PLN02654        404 SVGEPINPSAWRWFFNVVGDSR-CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGY  482 (666)
T ss_pred             EecCCCCHHHHHHHHHHhCCCC-CceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceE
Confidence            7899999999999998887322 2457999999974211      12456789999999999999 65 66788888999


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      |++++++| ++++||| +++.+...+. ...+| ||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.+||
T Consensus       483 l~v~~~~p-~~~~gy~~~~~~~~~~~~-~~~~g-~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p  559 (666)
T PLN02654        483 LCVKKSWP-GAFRTLYGDHERYETTYF-KPFAG-YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHP  559 (666)
T ss_pred             EEEcCCCc-hhhhhhcCChHHHHHhhh-hcCCC-EEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCC
Confidence            99999777 9999999 7777765541 12368 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH---HHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~y  485 (485)
                      +|.|++||+++++..|+.+++||+++++...+.   ++|+++|+++|++|
T Consensus       560 ~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~  609 (666)
T PLN02654        560 QCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAF  609 (666)
T ss_pred             CeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999998765543   47889999999876

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-34  Score=312.23  Aligned_cols=191  Identities=15%  Similarity=0.079  Sum_probs=162.2

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|+++++++++++.+.++    ..+++.||+||++...     ......+++|+|+||++++| |+ +..+++|+.|||
T Consensus       387 ~~G~~l~~~~~~~~~~~~g----~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl  462 (647)
T PTZ00237        387 CGGEVIEESIPEYIENKLK----IKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEIGEV  462 (647)
T ss_pred             ecCccCCHHHHHHHHHhcC----CCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCceEE
Confidence            7899999999999999886    4457999999975311     11233479999999999999 65 677899999999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  439 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~  439 (485)
                      ++++|+|++++.||| +++.+.+.|  ...+| ||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||.
T Consensus       463 ~v~~p~~p~~~~gy~~~~~~~~~~f--~~~~g-~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~  539 (647)
T PTZ00237        463 AFKLPMPPSFATTFYKNDEKFKQLF--SKFPG-YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPL  539 (647)
T ss_pred             EEeccCCchhhCceeCCHHHHHHHH--hCCCC-EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCC
Confidence            999987658999999 888887666  11267 99999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEEeCCCCCcEEEEEEEEcCCC---CCCH----HHHHHHHHhhCCCC
Q psy5016         440 VLEAYAYGVPDERMGEEVGISIKLKENA---KLNA----DDIRTFCKGKVSKF  485 (485)
Q Consensus       440 V~ea~vv~~~~~~~g~~~~a~vv~~~~~---~~~~----~~l~~~l~~~l~~y  485 (485)
                      |.||+||+++++..|+.++|||+++++.   ..+.    ++|+++|+++|++|
T Consensus       540 V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~  592 (647)
T PTZ00237        540 VLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESL  592 (647)
T ss_pred             ceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCcc
Confidence            9999999999999999999999998532   2333    46678888888875

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=8.1e-34  Score=307.54  Aligned_cols=250  Identities=15%  Similarity=0.160  Sum_probs=201.9

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhc----ccCCCcccccc--hhhccchhhhHh---------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ----KSDIDWEYADK--CEKSMQGWAKTL---------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~----~~~~~~~~~~~--~~pl~~~~~~~~---------------  284 (485)
                      ...-+.++|||||||.||.++++|.+.......+..    ...........  ..|++|.++...               
T Consensus       197 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~  276 (560)
T PLN02574        197 QDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVM  276 (560)
T ss_pred             cCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEe
Confidence            344566799999999999999999987766554432    11111111111  126777655320               


Q ss_pred             ----------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccc
Q psy5016         285 ----------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYE  318 (485)
Q Consensus       285 ----------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG  318 (485)
                                                                    ..+++|+++++++++++.+.|+.   ..+++.||
T Consensus       277 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~---~~v~~~YG  353 (560)
T PLN02574        277 RRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH---VDFIQGYG  353 (560)
T ss_pred             cCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCC---CcEEeccc
Confidence                                                          00177889999999998888752   45679999


Q ss_pred             cCCCCCC------CccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccC
Q psy5016         319 FQEKMFK------DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPD  388 (485)
Q Consensus       319 ~TEt~~~------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~  388 (485)
                      +||++..      ......++++|+|+|+++++| |+  +..+++|+.|||+|+|+   +++.||| +++.+++.|   +
T Consensus       354 ~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~---~~~~GY~~~~~~t~~~~---~  427 (560)
T PLN02574        354 MTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGP---GVMKGYLNNPKATQSTI---D  427 (560)
T ss_pred             ccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECc---chhhhhcCChhHhhhhc---c
Confidence            9997531      112245679999999999999 73  56689999999999999   9999999 888888777   5


Q ss_pred             CCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC
Q psy5016         389 SAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK  468 (485)
Q Consensus       389 ~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~  468 (485)
                      .+| ||+|||+|++|++|+++++||++|+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|+.+++..
T Consensus       428 ~~g-~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~  506 (560)
T PLN02574        428 KDG-WLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGST  506 (560)
T ss_pred             CCC-CcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCC
Confidence            678 9999999999999999999999999999999999999999999999999999999999888999999999887777


Q ss_pred             CCHHHHHHHHHhhCCCC
Q psy5016         469 LNADDIRTFCKGKVSKF  485 (485)
Q Consensus       469 ~~~~~l~~~l~~~l~~y  485 (485)
                      .+.++|.++++++|++|
T Consensus       507 ~~~~~l~~~~~~~l~~~  523 (560)
T PLN02574        507 LSQEAVINYVAKQVAPY  523 (560)
T ss_pred             CCHHHHHHHHHHhccCc
Confidence            78899999999999876

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-33  Score=304.66  Aligned_cols=244  Identities=18%  Similarity=0.169  Sum_probs=200.0

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccch-hhccchhhhH----------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKC-EKSMQGWAKT----------------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~~~~~----------------------  283 (485)
                      .....++|||||||.||.++++|.........+.....+...+...+ .|++|.++..                      
T Consensus       207 ~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~  286 (549)
T PRK07788        207 KPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEA  286 (549)
T ss_pred             CCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCHHH
Confidence            34567799999999999999999988777666655555542222222 2667765532                      


Q ss_pred             -------------------h--------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         284 -------------------L--------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       284 -------------------~--------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                         +                    ..++||+++++++.+++.+.|+    ..+++.||+||++.
T Consensus       287 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~----~~l~~~YG~TE~~~  362 (549)
T PRK07788        287 TLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG----PVLYNLYGSTEVAF  362 (549)
T ss_pred             HHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhC----ccceeccCcchhch
Confidence                               0                    0127899999999999998886    34679999999743


Q ss_pred             CC-----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016         325 KD-----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE  396 (485)
Q Consensus       325 ~~-----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T  396 (485)
                      ..     .....++++|+|+++++++| |+ +..++.|++|||+++|+   +++.||+ +++.   ..    .+| ||+|
T Consensus       363 ~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~---~~----~~g-~~~T  431 (549)
T PRK07788        363 ATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNG---FPFEGYTDGRDK---QI----IDG-LLSS  431 (549)
T ss_pred             hhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCC---CccccccCCCcc---cc----cCC-ceec
Confidence            11     11235678999999999999 65 66789999999999999   9999999 4433   22    467 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT  476 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  476 (485)
                      ||++++|++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|+++++...+.++|++
T Consensus       432 GDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  511 (549)
T PRK07788        432 GDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKD  511 (549)
T ss_pred             CceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998899999999998877788899999


Q ss_pred             HHHhhCCCC
Q psy5016         477 FCKGKVSKF  485 (485)
Q Consensus       477 ~l~~~l~~y  485 (485)
                      +|+++|++|
T Consensus       512 ~~~~~l~~~  520 (549)
T PRK07788        512 YVRDNLARY  520 (549)
T ss_pred             HHHHhhhcC
Confidence            999999876

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.6e-33  Score=309.47  Aligned_cols=193  Identities=17%  Similarity=0.092  Sum_probs=162.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC--------ccCccccCcccccCCcEEEE-cC--CCCCCCCC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD--------VKNYLITPALKGLYHFKKWM-NP--KFSTTTRK  356 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~--------~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~  356 (485)
                      ++|+++++++++++.+.++    ..+++.||+||++...        ......+++|+|+||++++| |+  +..+++|+
T Consensus       361 ~gGe~l~~~~~~~~~~~~~----~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~  436 (628)
T TIGR02316       361 LAGEPLDEPTAHWITDGLG----KPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE  436 (628)
T ss_pred             EecCCCCHHHHHHHHHHhC----CCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC
Confidence            7899999999999988886    4457999999975211        11345689999999999999 65  67799999


Q ss_pred             ceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016         357 VALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ  435 (485)
Q Consensus       357 ~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~  435 (485)
                      .|||+++||+|.+.+.+|| +++.+.+.+.....++ ||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.
T Consensus       437 ~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~  515 (628)
T TIGR02316       437 KGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRP-LYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVS  515 (628)
T ss_pred             cEEEEEecCCCccccccccCChHHHHHhhhhcCCCC-EEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHH
Confidence            9999999997657889999 6665554431112355 9999999999999999999999999999999999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC--------CHHHHHHHHHhhCCCC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKL--------NADDIRTFCKGKVSKF  485 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~--------~~~~l~~~l~~~l~~y  485 (485)
                      +||+|.||+|++++++..|+.+++||+++++...        ..++|+++|+++|++|
T Consensus       516 ~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~  573 (628)
T TIGR02316       516 SHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAV  573 (628)
T ss_pred             hCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999865432        2468999999999876

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.4e-33  Score=305.83  Aligned_cols=246  Identities=17%  Similarity=0.153  Sum_probs=195.2

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ....+.++|||||||.||.++++|.....+.........++..+..... |++|.++..                     
T Consensus       171 ~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~  250 (563)
T PLN02860        171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAK  250 (563)
T ss_pred             CCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCCCHH
Confidence            3556778999999999999999998876655554444444432222221 555544321                     


Q ss_pred             -----------------------h-----------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         284 -----------------------L-----------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       284 -----------------------~-----------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                             +                 ..++||+++++.+.+.+.+.|+.   ..+++.||+||++
T Consensus       251 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~---~~~~~~YG~TE~~  327 (563)
T PLN02860        251 AALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPN---AKLFSAYGMTEAC  327 (563)
T ss_pred             HHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCC---CceecCCCccccC
Confidence                                   0                 01178999999999999988853   4567999999974


Q ss_pred             CCC----c-c----------------------CccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCccccccc
Q psy5016         324 FKD----V-K----------------------NYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYK  375 (485)
Q Consensus       324 ~~~----~-~----------------------~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~  375 (485)
                      ...    . .                      .....++|+|+|+++++| |++    +|++|||+++|+   +++.|||
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~----~g~~Gel~v~g~---~~~~GY~  400 (563)
T PLN02860        328 SSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE----SSRVGRILTRGP---HVMLGYW  400 (563)
T ss_pred             cccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC----CCceeEEEEecC---ccccccc
Confidence            211    0 0                      111237899999999999 654    688999999999   9999999


Q ss_pred             -CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCC
Q psy5016         376 -KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  454 (485)
Q Consensus       376 -~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g  454 (485)
                       +++.++..+   ..+| ||+|||+|++|++|+++|+||++|+||++|++|+|.|||++|.+||+|.+++|++.+++..+
T Consensus       401 ~~~~~t~~~~---~~~g-~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~  476 (563)
T PLN02860        401 GQNSETASVL---SNDG-WLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLT  476 (563)
T ss_pred             CCccccchhc---cCCC-eEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCC
Confidence             888887776   5678 99999999999999999999999999999999999999999999999999999999999889


Q ss_pred             cEEEEEEEEcCCC--------------CCCHHHHHHHHHh-hCCCC
Q psy5016         455 EEVGISIKLKENA--------------KLNADDIRTFCKG-KVSKF  485 (485)
Q Consensus       455 ~~~~a~vv~~~~~--------------~~~~~~l~~~l~~-~l~~y  485 (485)
                      +.++++|+++++.              ..+.++|.+++++ +|++|
T Consensus       477 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~  522 (563)
T PLN02860        477 EMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRF  522 (563)
T ss_pred             ceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCccccc
Confidence            9999999998652              3456789999997 58876

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2e-34  Score=317.84  Aligned_cols=227  Identities=12%  Similarity=0.029  Sum_probs=179.8

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ..++-+.++|||||||.||.++++|.+...+.........++..+...+. |++|.++..                    
T Consensus       219 ~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~  298 (651)
T PLN02736        219 KPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNL  298 (651)
T ss_pred             CccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHH
Confidence            34556778999999999999999999987777666555555433222222 666654321                    


Q ss_pred             -------------------------------------------------------------------------------h
Q psy5016         284 -------------------------------------------------------------------------------L  284 (485)
Q Consensus       284 -------------------------------------------------------------------------------~  284 (485)
                                                                                                     +
T Consensus       299 ~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~l  378 (651)
T PLN02736        299 KLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRV  378 (651)
T ss_pred             HHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcE
Confidence                                                                                           0


Q ss_pred             -hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----CCccCccccCcccccCCcEEEE-cC-C----CCCC
Q psy5016         285 -SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----KDVKNYLITPALKGLYHFKKWM-NP-K----FSTT  353 (485)
Q Consensus       285 -~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~----~~~~  353 (485)
                       ..++||+++++++.+++.+.++    ..+++.||+||++.    .......++++|+|+||++++| |. +    ....
T Consensus       379 r~~~~gGa~l~~~~~~~~~~~~g----~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~  454 (651)
T PLN02736        379 RFMSSGASPLSPDVMEFLRICFG----GRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQ  454 (651)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhC----CCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCC
Confidence             0126789999999998887776    34679999999742    2223346789999999999999 63 2    1234


Q ss_pred             CCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEE-CcEeeChHHHH
Q psy5016         354 TRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIE  431 (485)
Q Consensus       354 ~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~-~G~~v~p~eIE  431 (485)
                      ++..|||+|+||   ++|.||| +++.+++.|   +.+| ||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||
T Consensus       455 ~~~~GEl~vrgp---~v~~GY~~~~~~t~~~~---~~dg-w~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE  527 (651)
T PLN02736        455 PYPRGEICVRGP---IIFKGYYKDEVQTREVI---DEDG-WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIE  527 (651)
T ss_pred             CCCCceEEecCC---ccccccccCHHHHHhhh---ccCC-CeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHH
Confidence            456799999999   9999999 889888887   5688 9999999999999999999999999996 79999999999


Q ss_pred             HHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         432 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       432 ~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                      ++|.+||.|.+|+|++.   ..++.++|+|++++
T Consensus       528 ~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~  558 (651)
T PLN02736        528 NVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDP  558 (651)
T ss_pred             HHHhcCCCeeEEEEEec---CCCceeEEEEEeCH
Confidence            99999999999999983   35778999999875

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.4e-33  Score=306.53  Aligned_cols=194  Identities=15%  Similarity=0.093  Sum_probs=165.4

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC------CccCccccCcccccCCcEEEE-cC-CCCCC-CCCce
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK------DVKNYLITPALKGLYHFKKWM-NP-KFSTT-TRKVA  358 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~-~g~~G  358 (485)
                      ++|+++++++++++.+.++..+ ..+++.||+||++..      .....+++++|+|++|++++| |+ +..++ +|+.|
T Consensus       365 ~~G~~l~~~~~~~~~~~~~~~~-~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~G  443 (625)
T TIGR02188       365 SVGEPINPEAWMWYYKVVGKER-CPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGG  443 (625)
T ss_pred             EecCCCCHHHHHHHHHHcCCCC-CceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeE
Confidence            7899999999999998886422 345799999997531      112456789999999999999 64 66788 89999


Q ss_pred             EEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcC
Q psy5016         359 LTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       359 el~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~  437 (485)
                      ||+|++++| ++++||| +++.+...+ ....+| ||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.+|
T Consensus       444 eL~v~~p~p-~~~~gy~~~~~~~~~~~-~~~~~g-~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~  520 (625)
T TIGR02188       444 YLVIKQPWP-GMLRTIYGDHERFVDTY-FSPFPG-YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSH  520 (625)
T ss_pred             EEEEccCCC-cccccccCChHHHHHHH-hccCCC-EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhC
Confidence            999999777 9999999 777665554 112367 999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH---HHHHHHHHhhCCCC
Q psy5016         438 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~y  485 (485)
                      |.|.+++|++++++..|+.+++||+++++...+.   ++|+++|+++|++|
T Consensus       521 p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~  571 (625)
T TIGR02188       521 PAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPI  571 (625)
T ss_pred             CCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999988765443   68999999998875

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.4e-33  Score=298.58  Aligned_cols=249  Identities=12%  Similarity=-0.085  Sum_probs=179.5

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH----------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT----------------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~----------------------  283 (485)
                      .+.+.++|||||||.||.++++|.+...+.........++..+...+. |++|.++..                      
T Consensus       119 ~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~  198 (499)
T PLN03051        119 ESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGR  198 (499)
T ss_pred             cceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcH
Confidence            556778999999999999999999866554433333333322211111 444432211                      


Q ss_pred             ---------------------------------------hh-hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         284 ---------------------------------------LS-SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       284 ---------------------------------------~~-~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                             ++ ..++|+++++++.+++.+.++ .+ ..+++.||+||++
T Consensus       199 ~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~-~~-~~~~~~YG~TE~~  276 (499)
T PLN03051        199 GFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRG-YY-KPVIEYCGGTELA  276 (499)
T ss_pred             HHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheEEEecCCCCCHHHHHHHHHhcc-cc-ceeEeeecccccc
Confidence                                                   00 016788888888877766322 11 2357999999964


Q ss_pred             CC-----CccCccccCcccccCCcEEEE-cC-CCCCCCC--CceEEEEecCCCCcc--cccccCccccccccccc-----
Q psy5016         324 FK-----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTR--KVALTWPNSMDSEAR--IYHYKKYLREEENITVP-----  387 (485)
Q Consensus       324 ~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g--~~Gel~v~g~~~~~~--~~gY~~~~~~~~~~~~~-----  387 (485)
                      ..     .......+++|+|.++++++| |+ +..+++|  ++|||+++|+   .+  +.|||+++.++..+...     
T Consensus       277 ~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~---~~~~~~gy~~~~~~~~~~~g~~~~~~  353 (499)
T PLN03051        277 SGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPP---MLGASDRLLNADHDKVYYKGMPMYGS  353 (499)
T ss_pred             ceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecC---cCCCCccccCCcccceeeecCCcccc
Confidence            21     112235679999999999999 65 6678888  4899999999   65  68999655433222000     


Q ss_pred             CCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHc-CCCccEEEEEEEeCCCCC-cEEEEEE---E
Q psy5016         388 DSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-EEVGISI---K  462 (485)
Q Consensus       388 ~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~-~~~V~ea~vv~~~~~~~g-~~~~a~v---v  462 (485)
                      ... +||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+ ||+|.+|+||+++++..| +.++|||   +
T Consensus       354 ~~~-~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v  432 (499)
T PLN03051        354 KGM-PLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGE  432 (499)
T ss_pred             CCc-ceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcce
Confidence            112 279999999999999999999999999999999999999999996 999999999999999888 6899998   7


Q ss_pred             EcCCC-CCCHHHHHHHHHhh
Q psy5016         463 LKENA-KLNADDIRTFCKGK  481 (485)
Q Consensus       463 ~~~~~-~~~~~~l~~~l~~~  481 (485)
                      ++++. ..+.++|+++|+++
T Consensus       433 ~~~~~~~~~~~~l~~~~~~~  452 (499)
T PLN03051        433 EKKGFDQARPEALQKKFQEA  452 (499)
T ss_pred             ecccccccchHHHHHHHHHH
Confidence            77664 45677777776544

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-33  Score=304.45  Aligned_cols=194  Identities=15%  Similarity=0.073  Sum_probs=164.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVAL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Ge  359 (485)
                      ++|+++++++++++.+.++... ..+++.||+||++...      ....+++++|+|++|++++| |+ +..++.|+.||
T Consensus       374 ~~Ge~l~~~~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Ge  452 (637)
T PRK00174        374 SVGEPINPEAWEWYYKVVGGER-CPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGN  452 (637)
T ss_pred             EeCCCCCHHHHHHHHHHhCCCC-CceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEE
Confidence            7899999999999988876322 3457999999975321      12345679999999999999 65 66789999999


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      |+|+|++| ++++||| +++.+.+.+ +...+| ||+|||++++|+||+++|+||.||+||++|++|+|.|||++|.+||
T Consensus       453 l~v~g~~p-~~~~gy~~~~~~~~~~~-~~~~~g-~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~  529 (637)
T PRK00174        453 LVIKDPWP-GMMRTIYGDHERFVKTY-FSTFKG-MYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP  529 (637)
T ss_pred             EEEcCCCC-cccccccCCHHHHHHhh-hcCCCC-EEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCC
Confidence            99999766 9999999 777665544 122467 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HHHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~y  485 (485)
                      +|.+++|++.+++..|+.+++||++.++...+   .++|+++|+++|++|
T Consensus       530 ~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~  579 (637)
T PRK00174        530 KVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPI  579 (637)
T ss_pred             CcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCc
Confidence            99999999999998999999999998876544   468999999999875

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.4e-33  Score=300.93  Aligned_cols=251  Identities=12%  Similarity=0.026  Sum_probs=190.7

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH----------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT----------------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~----------------------  283 (485)
                      ...+.++|||||||.||.++++|.............+.+...+...+. |++|.++..                      
T Consensus       174 ~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  253 (552)
T PRK09274        174 DDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGPALGMTSVIPDMDPTRPATVDPAK  253 (552)
T ss_pred             CCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhhhhCCeEEecCcccccccccCHHH
Confidence            455778999999999999999999877666555444444322211111 333322110                      


Q ss_pred             ------------------------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC
Q psy5016         284 ------------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD  326 (485)
Q Consensus       284 ------------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~  326 (485)
                                                          + ..+++|+++++++.+++.+.|+. + ..+++.||+||++...
T Consensus       254 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~-~~~~~~YG~TE~~~~~  331 (552)
T PRK09274        254 LFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPP-D-AEILTPYGATEALPIS  331 (552)
T ss_pred             HHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCC-C-ceEEccccccccceeE
Confidence                                                0 11288999999999999998862 1 3567999999974210


Q ss_pred             ----c----------cCccccCcccccCCcEEEE-cC----------CCCCCCCCceEEEEecCCCCccccccc-Ccccc
Q psy5016         327 ----V----------KNYLITPALKGLYHFKKWM-NP----------KFSTTTRKVALTWPNSMDSEARIYHYK-KYLRE  380 (485)
Q Consensus       327 ----~----------~~~~~~s~G~p~pg~~v~I-d~----------~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~  380 (485)
                          .          ......++|+|+|+++++| |+          +..++.|++|||+++|+   +++.||| +++.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~---~~~~GY~~~~~~t  408 (552)
T PRK09274        332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGP---MVTRSYYNRPEAT  408 (552)
T ss_pred             eecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecC---cccccccCChHHh
Confidence                0          1112347999999999999 73          34588999999999999   9999999 78777


Q ss_pred             cccccccCCCC-CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEE
Q psy5016         381 EENITVPDSAG-RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  459 (485)
Q Consensus       381 ~~~~~~~~~~g-~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a  459 (485)
                      ...+. .+.+| .||+|||+|++|+||+|++.||.||+||++|.+|+|.|||++|.+||+|.+|+|++++++ .++.+++
T Consensus       409 ~~~~~-~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~~  486 (552)
T PRK09274        409 RLAKI-PDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPVL  486 (552)
T ss_pred             hhhhc-ccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEEE
Confidence            76541 12233 499999999999999999999999999999999999999999999999999999999876 4678999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHhhCCC
Q psy5016         460 SIKLKENAKLNADDIRTFCKGKVSK  484 (485)
Q Consensus       460 ~vv~~~~~~~~~~~l~~~l~~~l~~  484 (485)
                      +|+++++...+.++|.++|++.++.
T Consensus       487 ~v~~~~~~~~~~~~l~~~l~~~l~~  511 (552)
T PRK09274        487 CVELEPGVACSKSALYQELRALAAA  511 (552)
T ss_pred             EEEccCccccchHHHhhhhHHHHHh
Confidence            9998887666666777777776554

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.2e-33  Score=301.98  Aligned_cols=218  Identities=16%  Similarity=0.074  Sum_probs=184.0

Q ss_pred             ccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccC-CCcccccchh-hccchhhhHh-----------------
Q psy5016         224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSD-IDWEYADKCE-KSMQGWAKTL-----------------  284 (485)
Q Consensus       224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~-~~~~~~~~~~-pl~~~~~~~~-----------------  284 (485)
                      ...+.-+.++|||||||.||+++++|.+...+.....+... +...+..++. |+.|.+..++                 
T Consensus       188 ~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~  267 (613)
T COG1022         188 PKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKED  267 (613)
T ss_pred             CCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCC
Confidence            34455566799999999999999999999999988888776 6644444444 8888766640                 


Q ss_pred             ----------------------------------------h---------------------------------------
Q psy5016         285 ----------------------------------------S---------------------------------------  285 (485)
Q Consensus       285 ----------------------------------------~---------------------------------------  285 (485)
                                                              .                                       
T Consensus       268 ~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Ki  347 (613)
T COG1022         268 PRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKI  347 (613)
T ss_pred             HHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHH
Confidence                                                    0                                       


Q ss_pred             ----------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC----CCCccCccccCcccccCCcEEEE-cCCC
Q psy5016         286 ----------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM----FKDVKNYLITPALKGLYHFKKWM-NPKF  350 (485)
Q Consensus       286 ----------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~----~~~~~~~~~~s~G~p~pg~~v~I-d~~~  350 (485)
                                .++||+++++++...+...    + ..+.++||||||+    ........++++|+|+|+++++| |+  
T Consensus       348 r~~lGgri~~~~sGGa~l~~~~~~f~~~l----G-i~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d~--  420 (613)
T COG1022         348 RDALGGRIRYALSGGAPLSPELLHFFRSL----G-IPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADD--  420 (613)
T ss_pred             HHHhCCcEEEEEecCCcCCHHHHHHHHHc----C-CCeEEEecccccccceEEccccCcccCCcCCcCCCceEEEccC--
Confidence                      0089999999988877764    2 3346999999974    35567788999999999999999 75  


Q ss_pred             CCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEE-ECcEeeChH
Q psy5016         351 STTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMII-RGGENIYPK  428 (485)
Q Consensus       351 ~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~-~~G~~v~p~  428 (485)
                             |||+||||   ++|+||| +|++|+++|   ++|| ||+|||+|.+|++|+|+|+||+||+|+ .+|++|.|+
T Consensus       421 -------GEilVRG~---~Vm~GYyk~pe~Taeaf---~~DG-Wf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~  486 (613)
T COG1022         421 -------GEILVRGP---NVMKGYYKNPEATAEAF---TEDG-WFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPE  486 (613)
T ss_pred             -------ceEEEecc---hhcchhcCChHHHhhhc---cccC-CcccCceeEEcCCCcEEEeecccceEECCCCcccChH
Confidence                   99999999   9999999 999999999   7899 999999999999999999999999999 799999999


Q ss_pred             HHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       429 eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                      .||+.+.++|-|.+++||+ .+.   ..+.|.|+++.+
T Consensus       487 ~IE~~l~~~~~I~qi~vvg-~~k---~~~~AlIvp~~~  520 (613)
T COG1022         487 PIESKLAKSPLIEQICVVG-DDK---KFLVALIVPDFD  520 (613)
T ss_pred             HHHHHHhcCCCeeEEEEEe-cCC---cceEEEEeCCHH
Confidence            9999999999999999999 433   268899987653

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-32  Score=298.51  Aligned_cols=187  Identities=21%  Similarity=0.261  Sum_probs=166.1

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC----CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTW  361 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~  361 (485)
                      +||+++++++.+.+.+.++    ..+++.||+||++..    ......++++|+|+|+++++| |+ +..++.|+.|||+
T Consensus       333 ~gG~~~~~~~~~~~~~~~~----~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~  408 (562)
T PRK05677        333 SGGMALQLATAERWKEVTG----CAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELC  408 (562)
T ss_pred             EcCccCCHHHHHHHHHHcC----CCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEECCCCCCCCCCCCeEEE
Confidence            7889999999998888776    456899999997431    122345678999999999999 55 6679999999999


Q ss_pred             EecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCc
Q psy5016         362 PNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV  440 (485)
Q Consensus       362 v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V  440 (485)
                      ++|+   +++.||+ +++.+++.|   ..+| ||+|||+|++|++|+++|.||++|+||++|.+|+|.|||++|.+||+|
T Consensus       409 v~g~---~~~~gY~~~~~~t~~~~---~~~g-~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v  481 (562)
T PRK05677        409 VKGP---QVMKGYWQRPEATDEIL---DSDG-WLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGV  481 (562)
T ss_pred             EecC---ccchhhcCCchhhhhcc---CCCC-cccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCc
Confidence            9999   9999999 888888877   4578 999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         441 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       441 ~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      .+++|++++++..++.++++++++++...+.++|+++++++|++|
T Consensus       482 ~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  526 (562)
T PRK05677        482 LQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGY  526 (562)
T ss_pred             cEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhc
Confidence            999999999988889999999988776778899999999999876

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-32  Score=296.47  Aligned_cols=247  Identities=18%  Similarity=0.192  Sum_probs=198.0

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccch-hhccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKC-EKSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~~~~~--------------------  283 (485)
                      .....+.++|||||||.||.++++|.+...+.........+...+...+ .|++|.++..                    
T Consensus       194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~  273 (537)
T PRK13382        194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDP  273 (537)
T ss_pred             CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCH
Confidence            3456777899999999999999999776665555444444332221111 1555543321                    


Q ss_pred             ----------------------------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         284 ----------------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       284 ----------------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                              + ..+++|+++++++++.+.+.++    ..+++.||+||+
T Consensus       274 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~----~~i~~~YG~TE~  349 (537)
T PRK13382        274 EATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG----DVIYNNYNATEA  349 (537)
T ss_pred             HHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC----CcEEeccccccc
Confidence                                                    0 0137899999999999999887    346899999997


Q ss_pred             CCCC-----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEe
Q psy5016         323 MFKD-----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       323 ~~~~-----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~  395 (485)
                      +...     .....++++|+|+++++++| |+ +..++.|+.|||+++|+   +++.||+ ++.+. .+    .+| ||+
T Consensus       350 ~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~---~~~~gY~-~~~~~-~~----~~g-~~~  419 (537)
T PRK13382        350 GMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRND---TQFDGYT-SGSTK-DF----HDG-FMA  419 (537)
T ss_pred             CcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcC---CcccCcc-ccchh-hc----cCC-CEe
Confidence            5311     11345679999999999999 55 67789999999999999   9999998 44443 23    368 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR  475 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  475 (485)
                      |||++++|++|+++|.||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++|++.++...+.++++
T Consensus       420 TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  499 (537)
T PRK13382        420 SGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLK  499 (537)
T ss_pred             eCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999877677789999


Q ss_pred             HHHHhhCCCC
Q psy5016         476 TFCKGKVSKF  485 (485)
Q Consensus       476 ~~l~~~l~~y  485 (485)
                      ++|+++|++|
T Consensus       500 ~~l~~~l~~~  509 (537)
T PRK13382        500 QHVRDNLANY  509 (537)
T ss_pred             HHHHHhccCC
Confidence            9999999876

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-33  Score=305.80  Aligned_cols=192  Identities=19%  Similarity=0.158  Sum_probs=158.0

Q ss_pred             ccCCCCCHHHHHHHHhhhhhccc--CccccccccCCCCC----CCccC---------------------------ccccC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQN--RIDDVEYEFQEKMF----KDVKN---------------------------YLITP  334 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~--~~i~~~YG~TEt~~----~~~~~---------------------------~~~~s  334 (485)
                      +||+++++++.+++.+.|+..+.  ..+++.||+||++.    .....                           ....+
T Consensus       313 ~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s  392 (631)
T PRK07769        313 NGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVS  392 (631)
T ss_pred             eccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEe
Confidence            68889999999999988854332  34679999999632    10000                           12358


Q ss_pred             cccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc--------------CCCCCeEec
Q psy5016         335 ALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP--------------DSAGRSIFE  396 (485)
Q Consensus       335 ~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~--------------~~~g~~~~T  396 (485)
                      +|+|+++++++| |+  +..++.|++|||+++|+   +++.||| +++.+++.|...              +.+| ||+|
T Consensus       393 ~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp---~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~g-w~~T  468 (631)
T PRK07769        393 AGKVGVSEWAVIVDPETASELPDGQIGEIWLHGN---NIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDAL-WVRT  468 (631)
T ss_pred             CCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCC---CccccccCChhHHHHHHhhhcccccccccccCcccCCC-eeec
Confidence            999999999999 63  56789999999999999   9999999 888888777310              1236 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHc-CCCccE--EEEEEEeC-------------------CCCC
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPD-------------------ERMG  454 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~-~~~V~e--a~vv~~~~-------------------~~~g  454 (485)
                      ||+|+++ ||+|+|+||+||+||++|++|+|.|||++|.+ ||.|.+  ++|+++++                   +..|
T Consensus       469 GDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g  547 (631)
T PRK07769        469 GDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS  547 (631)
T ss_pred             cccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC
Confidence            9999995 99999999999999999999999999999996 899998  99999998                   5578


Q ss_pred             cEEEEEEEEcCCC-CCCHHHHHHHHHhhCCC
Q psy5016         455 EEVGISIKLKENA-KLNADDIRTFCKGKVSK  484 (485)
Q Consensus       455 ~~~~a~vv~~~~~-~~~~~~l~~~l~~~l~~  484 (485)
                      +.++++|+++++. ..+.++|.++|+++|+.
T Consensus       548 e~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~  578 (631)
T PRK07769        548 EQLVIVAERAPGAHKLDPQPIADDIRAAIAV  578 (631)
T ss_pred             ccEEEEEEecCccccccHHHHHHHHHHHHHH
Confidence            9999999998763 56788999999988763

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-32  Score=299.27  Aligned_cols=251  Identities=16%  Similarity=0.085  Sum_probs=196.6

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ...+.+.++|||||||.||.++++|...............+...+...+. |++|..+..                    
T Consensus       203 ~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~  282 (570)
T PRK04319        203 DREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRF  282 (570)
T ss_pred             CCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCC
Confidence            34566778999999999999999999876655544433333311111111 111111100                    


Q ss_pred             -----------------------h--------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         284 -----------------------L--------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       284 -----------------------~--------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                             +                    ..+++|+++++++.+++.+.++    ..+++.||+|
T Consensus       283 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g----~~i~~~YG~t  358 (570)
T PRK04319        283 SPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG----LPIHDNWWMT  358 (570)
T ss_pred             CHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhC----CCeEeceeec
Confidence                                   0                    0127899999999999988876    4567999999


Q ss_pred             CCCCC-----CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016         321 EKMFK-----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       321 Et~~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      |++..     ......++++|+|+|+++++| |+ +..+++|++|||++++.+| +++.||| +++.+.+.|    .+| 
T Consensus       359 E~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~-~~~~GY~~~~~~~~~~~----~~g-  432 (570)
T PRK04319        359 ETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWP-SMMRGIWNNPEKYESYF----AGD-  432 (570)
T ss_pred             ccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCC-hHHhHhcCCHHHhhhhh----cCC-
Confidence            97531     112345789999999999999 54 6678999999999998433 9999999 788888777    478 


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH-
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA-  471 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~-  471 (485)
                      ||+|||++++|++|+++++||.+|+||++|++|+|.|||++|.+||.|.+++|++.+++..++.+++++++.++...+. 
T Consensus       433 w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~  512 (570)
T PRK04319        433 WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEE  512 (570)
T ss_pred             ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999989999999999987654332 


Q ss_pred             --HHHHHHHHhhCCCC
Q psy5016         472 --DDIRTFCKGKVSKF  485 (485)
Q Consensus       472 --~~l~~~l~~~l~~y  485 (485)
                        ++|.++|+++|++|
T Consensus       513 ~~~~l~~~~~~~l~~~  528 (570)
T PRK04319        513 LKEEIRGFVKKGLGAH  528 (570)
T ss_pred             HHHHHHHHHHHhcccc
Confidence              58999999999876

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.7e-32  Score=296.06  Aligned_cols=245  Identities=9%  Similarity=-0.015  Sum_probs=184.3

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      .+..+.++|||||||.||.++++|.+...+.......+.++..+...+. |++|.++...                    
T Consensus       182 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~  261 (539)
T PRK06334        182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLY  261 (539)
T ss_pred             cCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCC
Confidence            3556778999999999999999999877666555555555422222211 5555544310                    


Q ss_pred             -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                               ..++||+++++++.+++.+.|+.   ..+++.||+||++
T Consensus       262 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~i~~~YG~TE~~  338 (539)
T PRK06334        262 PKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPH---IQLRQGYGTTECS  338 (539)
T ss_pred             HHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCC---CeEEecccccccC
Confidence                                                     00178999999999999988752   4467999999975


Q ss_pred             CC-----CccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeE
Q psy5016         324 FK-----DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSI  394 (485)
Q Consensus       324 ~~-----~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~  394 (485)
                      ..     .......+++|+|+++++++| |+  +..+++|+.|||+|+|+   +++.||| +++.+...  ..+.+| ||
T Consensus       339 ~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~---~~~~GY~~~~~~~~~~--~~~~~~-w~  412 (539)
T PRK06334        339 PVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGT---SLFSGYLGEDFGQGFV--ELGGET-WY  412 (539)
T ss_pred             ceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecC---cccccccCCcccccce--eeCCce-eE
Confidence            21     112234568999999999999 64  46699999999999999   9999999 66644321  123456 99


Q ss_pred             ecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccE------EEEEEEeCCCCCcEEEEEEEEcCCCC
Q psy5016         395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE------AYAYGVPDERMGEEVGISIKLKENAK  468 (485)
Q Consensus       395 ~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~e------a~vv~~~~~~~g~~~~a~vv~~~~~~  468 (485)
                      +|||+|++|++|+++|.||.||+||++|++|+|.|||++|.+||+|.+      ++|++++++.  ..++++++..    
T Consensus       413 ~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~~~----  486 (539)
T PRK06334        413 VTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTTFP----  486 (539)
T ss_pred             ECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEecc----
Confidence            999999999999999999999999999999999999999999999998      7788877532  3455555432    


Q ss_pred             CCHHHHHHHHHhh-CCCC
Q psy5016         469 LNADDIRTFCKGK-VSKF  485 (485)
Q Consensus       469 ~~~~~l~~~l~~~-l~~y  485 (485)
                      .+.++++++|+++ ++.|
T Consensus       487 ~~~~~~~~~l~~~~~~~~  504 (539)
T PRK06334        487 TSISEVNDILKNSKTSSI  504 (539)
T ss_pred             CChHHHHHHHHhcCCccc
Confidence            3567899999886 5554

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-32  Score=290.84  Aligned_cols=246  Identities=21%  Similarity=0.181  Sum_probs=199.9

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS--------------------  285 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~--------------------  285 (485)
                      +..+.++|||||||.||.+++++.....+.........++..+...+. |++|..+....                    
T Consensus       149 ~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  228 (496)
T PRK06839        149 SASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPT  228 (496)
T ss_pred             CCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHH
Confidence            445677999999999999999999776555544444444422222222 66665443210                    


Q ss_pred             ----------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         286 ----------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       286 ----------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                                              .++||+++++++.+.+.+. +    ..+.+.||+||++..
T Consensus       229 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g----~~~~~~YG~tE~~~~  303 (496)
T PRK06839        229 KALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-G----FLFGQGFGMTETSPT  303 (496)
T ss_pred             HHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh-C----CeeEeeccCCCCCcc
Confidence                                                    1178899999998888764 3    345799999997531


Q ss_pred             C------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016         326 D------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE  396 (485)
Q Consensus       326 ~------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T  396 (485)
                      .      ......+++|+|+++++++| |+ +..++.|+.|||+|+|+   +++.||+ +++.+...+    .+| ||+|
T Consensus       304 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g-~~~T  375 (496)
T PRK06839        304 VFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGP---NVMKEYWNRPDATEETI----QDG-WLCT  375 (496)
T ss_pred             eEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECC---CcchhhcCChHHHHHHH----cCC-Ceee
Confidence            1      12245679999999999999 55 56689999999999999   9999999 777777666    578 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT  476 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  476 (485)
                      ||++++|++|++++.||.+|+||++|.+|+|.+||++|.++|+|.+++|++++++..++.++++|+++++...+.+++++
T Consensus       376 GDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~  455 (496)
T PRK06839        376 GDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIE  455 (496)
T ss_pred             cceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998899999999998877788899999


Q ss_pred             HHHhhCCCC
Q psy5016         477 FCKGKVSKF  485 (485)
Q Consensus       477 ~l~~~l~~y  485 (485)
                      +|+++|++|
T Consensus       456 ~~~~~l~~~  464 (496)
T PRK06839        456 HCRLFLAKY  464 (496)
T ss_pred             HHHhhCcCC
Confidence            999999876

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.1e-33  Score=307.15  Aligned_cols=163  Identities=11%  Similarity=0.034  Sum_probs=133.8

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC----Cc-cCccccCcccccCCcEEEE-c-C---CCCCCCCCc
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK----DV-KNYLITPALKGLYHFKKWM-N-P---KFSTTTRKV  357 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~----~~-~~~~~~s~G~p~pg~~v~I-d-~---~~~~~~g~~  357 (485)
                      +||+++++.+ +.+.+.++.   ..++++||+||++..    .. .....+++|+|+|+++++| | +   +..+++|+.
T Consensus       393 ~Gga~l~~~~-~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~  468 (666)
T PLN02614        393 SGAAPLASHV-ESFLRVVAC---CHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPR  468 (666)
T ss_pred             EcCCCCCHHH-HHHHHHhcC---CCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCC
Confidence            4566777654 444444431   345799999996421    11 1235689999999999999 6 3   256889999


Q ss_pred             eEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEE-CcEeeChHHHHHHHH
Q psy5016         358 ALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQ  435 (485)
Q Consensus       358 Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~-~G~~v~p~eIE~~l~  435 (485)
                      |||+|+||   ++|.||| +++.|++.|    .+| ||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.
T Consensus       469 GEl~vrGp---~v~~GY~~~pe~T~~~f----~dG-w~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~  540 (666)
T PLN02614        469 GEICIRGK---TLFSGYYKREDLTKEVL----IDG-WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG  540 (666)
T ss_pred             ceEEEcCC---cccccccCCHHHhhhhh----ccC-CcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHh
Confidence            99999999   9999999 899999888    578 9999999999999999999999999995 799999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                      +||.|.+++|+|....   ..++|+|+++.
T Consensus       541 ~~p~V~~~~V~g~~~~---~~l~alvv~~~  567 (666)
T PLN02614        541 EVQAVDSVWVYGNSFE---SFLVAIANPNQ  567 (666)
T ss_pred             cCCCeeEEEEEecCCc---ceEEEEEeCCH
Confidence            9999999999998632   25889998764

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-32  Score=292.88  Aligned_cols=253  Identities=17%  Similarity=0.130  Sum_probs=202.4

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ...+-+.++|||||||.||.++++|.+...+.........+...+...+. |++|.++..                    
T Consensus       188 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~  267 (546)
T PRK08314        188 GPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWD  267 (546)
T ss_pred             CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCC
Confidence            34566778999999999999999999887776655544444422222222 556654431                    


Q ss_pred             ----------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         284 ----------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       284 ----------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                              ...++||+++++++++++.+.++    ..+++.||+||++
T Consensus       268 ~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~  343 (546)
T PRK08314        268 REAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTG----LDYVEGYGLTETM  343 (546)
T ss_pred             HHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHcC----CcEEecccccccc
Confidence                                                    00127899999999999998876    4467999999975


Q ss_pred             CCC----ccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         324 FKD----VKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       324 ~~~----~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      ...    ......+++|+|+++++++| |+  +..++.|+.|||+|+|+   +++.||+ +++.+.+.|...+.++ ||+
T Consensus       344 ~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~f~~~~~~~-~~~  419 (546)
T PRK08314        344 AQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGP---QVFKGYWNRPEATAEAFIEIDGKR-FFR  419 (546)
T ss_pred             cceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECC---chhccccCChhHhhhhhhhcCCCc-eEe
Confidence            321    11234578999999999999 64  56689999999999999   9999999 7777776663222345 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC--CCCHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA--KLNADD  473 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~--~~~~~~  473 (485)
                      |||+|++|++|++++.||+||+||++|.+|+|.|||++|.+||+|.+++|++.++...++.++++|+++++.  ..+.++
T Consensus       420 TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~  499 (546)
T PRK08314        420 TGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEE  499 (546)
T ss_pred             cCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999988889999999988754  345689


Q ss_pred             HHHHHHhhCCCC
Q psy5016         474 IRTFCKGKVSKF  485 (485)
Q Consensus       474 l~~~l~~~l~~y  485 (485)
                      ++++|+++|++|
T Consensus       500 l~~~~~~~l~~~  511 (546)
T PRK08314        500 IIAWAREHMAAY  511 (546)
T ss_pred             HHHHHHHhcccC
Confidence            999999999876

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5.6e-32  Score=291.48  Aligned_cols=250  Identities=15%  Similarity=0.119  Sum_probs=202.1

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhc----ccCCCcccccchh-hccchhhhHh----------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ----KSDIDWEYADKCE-KSMQGWAKTL----------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~----~~~~~~~~~~~~~-pl~~~~~~~~----------------  284 (485)
                      ....+.++|||||||.||.+++++.+.........+    ...+...+...+. |++|.++...                
T Consensus       178 ~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~  257 (537)
T PLN02246        178 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP  257 (537)
T ss_pred             ccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC
Confidence            455677799999999999999999887766554332    2333322222222 6666544310                


Q ss_pred             --------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         285 --------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       285 --------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                                                  ..+.+|+++++++.+.+.+.++.   ..+++.||+|
T Consensus       258 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~---~~~~~~YG~t  334 (537)
T PLN02246        258 KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPN---AVLGQGYGMT  334 (537)
T ss_pred             CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCC---CeEecccccc
Confidence                                                        01278899999999999988753   4567999999


Q ss_pred             CCCCC---------CccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc
Q psy5016         321 EKMFK---------DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP  387 (485)
Q Consensus       321 Et~~~---------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~  387 (485)
                      |++..         ......++++|+|+++++++| |+  +..++.|+.|||+++|+   +++.||+ +++.+...+   
T Consensus       335 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~---~~~~GY~~~~~~~~~~~---  408 (537)
T PLN02246        335 EAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGP---QIMKGYLNDPEATANTI---  408 (537)
T ss_pred             ccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECC---chhccccCCchhhhhcc---
Confidence            97531         112245678999999999999 74  56799999999999999   9999999 788877766   


Q ss_pred             CCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC
Q psy5016         388 DSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA  467 (485)
Q Consensus       388 ~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~  467 (485)
                      +.++ ||+|||+++++++|++++.||.+|+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|+..++.
T Consensus       409 ~~~~-~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  487 (537)
T PLN02246        409 DKDG-WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGS  487 (537)
T ss_pred             cCCC-CeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCC
Confidence            5677 999999999999999999999999999999999999999999999999999999999988899999999998776


Q ss_pred             CCCHHHHHHHHHhhCCCC
Q psy5016         468 KLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       468 ~~~~~~l~~~l~~~l~~y  485 (485)
                      ..+.++|+++|+++|++|
T Consensus       488 ~~~~~~l~~~l~~~l~~~  505 (537)
T PLN02246        488 EITEDEIKQFVAKQVVFY  505 (537)
T ss_pred             CCCHHHHHHHHHhhCcCc
Confidence            777899999999999876

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.7e-32  Score=294.87  Aligned_cols=245  Identities=13%  Similarity=0.024  Sum_probs=182.3

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCC-cccccchh-hccchhhhH--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDID-WEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~-~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ..+-+.++|||||||.||.++++|.+.......+.+.+.++ ..+...+. |++|.++..                    
T Consensus       151 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~  230 (525)
T PRK05851        151 SGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAF  230 (525)
T ss_pred             CCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHH
Confidence            34567789999999999999999998777666555554444 22221111 555533211                    


Q ss_pred             -------------------------------------------h-hhhccCCCCCHHHHHHHHhhhhhccc--Ccccccc
Q psy5016         284 -------------------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQN--RIDDVEY  317 (485)
Q Consensus       284 -------------------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~--~~i~~~Y  317 (485)
                                                                 + ..+++|+++++++.+++.+.+..++.  ..+++.|
T Consensus       231 ~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y  310 (525)
T PRK05851        231 SASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSY  310 (525)
T ss_pred             HHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhccccc
Confidence                                                       0 01278899999999988876543332  2367999


Q ss_pred             ccCCCCCCC----c---------------cCccccCcccccCCcEEEE-cCC--CCCCCCCceEEEEecCCCCccccccc
Q psy5016         318 EFQEKMFKD----V---------------KNYLITPALKGLYHFKKWM-NPK--FSTTTRKVALTWPNSMDSEARIYHYK  375 (485)
Q Consensus       318 G~TEt~~~~----~---------------~~~~~~s~G~p~pg~~v~I-d~~--~~~~~g~~Gel~v~g~~~~~~~~gY~  375 (485)
                      |+||++...    .               .....+++|+|+||++++| |++  ..++.|+.|||+++|+   +++.|||
T Consensus       311 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~---~~~~GY~  387 (525)
T PRK05851        311 GLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGA---SMMSGYL  387 (525)
T ss_pred             chhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecC---chhhccc
Confidence            999974210    0               0123468999999999999 654  3488999999999999   9999999


Q ss_pred             -CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCC
Q psy5016         376 -KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  454 (485)
Q Consensus       376 -~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g  454 (485)
                       +++.        +.+| ||+|||++++| +|+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..+
T Consensus       388 ~~~~~--------~~~~-~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~  457 (525)
T PRK05851        388 GQAPI--------DPDD-WFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGS  457 (525)
T ss_pred             cCCcc--------CCCC-ceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCC
Confidence             5431        2467 99999999997 79999999999999999999999999999999999999999999998888


Q ss_pred             cEEEEEEEEcCCCCCCHHHHHHHHHhhCCC
Q psy5016         455 EEVGISIKLKENAKLNADDIRTFCKGKVSK  484 (485)
Q Consensus       455 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~  484 (485)
                      +.+.++|+... ...+.+++.++|+++|+.
T Consensus       458 ~~~~~~v~~~~-~~~~~~~~~~~~~~~l~~  486 (525)
T PRK05851        458 ARPGLVIAAEF-RGPDEAGARSEVVQRVAS  486 (525)
T ss_pred             CceeEEEEEEe-cCcchHHHHHHHHHHHHH
Confidence            88877776542 223455666666665543

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=9e-33  Score=305.03  Aligned_cols=162  Identities=10%  Similarity=0.067  Sum_probs=133.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC-C---CCCCCCCc
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP-K---FSTTTRKV  357 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~---~~~~~g~~  357 (485)
                      +||+++++++. .+.+.++.   ..++++||+||++..     .......+++|+|+|+++++| |. .   ..++++..
T Consensus       390 ~Ggapl~~~~~-~~~~~~~~---~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~  465 (660)
T PLN02861        390 SGAAPLPRHVE-EFLRVTSC---SVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPR  465 (660)
T ss_pred             ECCCCCCHHHH-HHHHHHcC---CCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCc
Confidence            57788888764 45555542   346799999996421     111234689999999999999 62 1   22456678


Q ss_pred             eEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEE-CcEeeChHHHHHHHH
Q psy5016         358 ALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQ  435 (485)
Q Consensus       358 Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~-~G~~v~p~eIE~~l~  435 (485)
                      |||+++|+   +++.||| +++.|++.|    .+| ||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.
T Consensus       466 GEi~vrGp---~v~~GY~~~pe~T~~~f----~dG-w~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~  537 (660)
T PLN02861        466 GEICLRGN---TLFSGYHKRQDLTEEVL----IDG-WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYS  537 (660)
T ss_pred             eeEEEcCC---cccccccCCHHHHHhhh----hcc-CcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHh
Confidence            99999999   9999999 899999888    578 9999999999999999999999999996 899999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLK  464 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~  464 (485)
                      +||.|.+|+|++.+   .++.++|+|+++
T Consensus       538 ~~p~V~~a~V~G~~---~~~~~~A~vv~~  563 (660)
T PLN02861        538 RCPLIASIWVYGNS---FESFLVAVVVPD  563 (660)
T ss_pred             cCCCeeEEEEEecC---CcceeEEEEEcC
Confidence            99999999999986   346799999875

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-32  Score=288.59  Aligned_cols=248  Identities=18%  Similarity=0.111  Sum_probs=200.5

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL---------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~---------------------  284 (485)
                      .+-+.++|||||||.||.+++++.+...........+.+...+..... |++|.++...                     
T Consensus       149 ~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  228 (497)
T PRK06145        149 TDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPE  228 (497)
T ss_pred             cceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHH
Confidence            445667999999999999999998776555444444444422222222 5555433210                     


Q ss_pred             ---------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         285 ---------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       285 ---------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                                             ..++||+++++.+++.+.+.|+.   ..+++.||+||++..
T Consensus       229 ~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~  305 (497)
T PRK06145        229 AVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTR---ARYIDAYGLTETCSG  305 (497)
T ss_pred             HHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCC---CceEEeecCcccCCc
Confidence                                                   01278999999999999988863   456799999997531


Q ss_pred             ------CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016         326 ------DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE  396 (485)
Q Consensus       326 ------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T  396 (485)
                            .......+++|+|+++++++| |+ +..+++|+.|||+++|+   +++.||+ +++.+++.|    .++ ||+|
T Consensus       306 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~---~~~~Gy~~~~~~~~~~~----~~~-~~~T  377 (497)
T PRK06145        306 DTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGP---KVTKGYWKDPEKTAEAF----YGD-WFRS  377 (497)
T ss_pred             ceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECc---chhhhhcCChHHHHHHH----hCC-Ceec
Confidence                  111235678999999999999 54 56688999999999999   9999999 788888777    467 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT  476 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  476 (485)
                      ||++++|++|+++++||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+.+++++.++...+.++|.+
T Consensus       378 GDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  457 (497)
T PRK06145        378 GDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDR  457 (497)
T ss_pred             cceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988889999999998766678899999


Q ss_pred             HHHhhCCCC
Q psy5016         477 FCKGKVSKF  485 (485)
Q Consensus       477 ~l~~~l~~y  485 (485)
                      +|+++|++|
T Consensus       458 ~~~~~l~~~  466 (497)
T PRK06145        458 HCRQRLASF  466 (497)
T ss_pred             HHHHhhhcC
Confidence            999998876

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-32  Score=291.73  Aligned_cols=246  Identities=20%  Similarity=0.221  Sum_probs=196.6

Q ss_pred             CCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh----------------------
Q psy5016         228 NGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL----------------------  284 (485)
Q Consensus       228 ~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~----------------------  284 (485)
                      +-+.++|||||||.||.+.++|.+...........+.+...+...+. |++|.++...                      
T Consensus       177 ~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~  256 (534)
T PRK05852        177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSA  256 (534)
T ss_pred             CceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCH
Confidence            34677999999999999999998877766655554544422222222 5555433310                      


Q ss_pred             ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                                ...++|+++++++++++.+.|+    ..+++.||+||+
T Consensus       257 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~----~~v~~~YG~tE~  332 (534)
T PRK05852        257 HTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFA----APVVCAFGMTEA  332 (534)
T ss_pred             HHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhC----CChhhccCcccc
Confidence                                                      0015788999999999998886    456799999997


Q ss_pred             CCCCc---------cCccccCcccc--cCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccC
Q psy5016         323 MFKDV---------KNYLITPALKG--LYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPD  388 (485)
Q Consensus       323 ~~~~~---------~~~~~~s~G~p--~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~  388 (485)
                      +....         ......++|.+  .+|++++| |+ +..+++|+.|||+++|+   ++++||+ +++.+++.|    
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~---~v~~gY~~~~~~t~~~~----  405 (534)
T PRK05852        333 THQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGT---TVVRGYLGDPTITAANF----  405 (534)
T ss_pred             chhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEEEEecC---cccchhcCCcccchhhh----
Confidence            43111         01111234444  79999999 55 66799999999999999   9999999 888888877    


Q ss_pred             CCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC
Q psy5016         389 SAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK  468 (485)
Q Consensus       389 ~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~  468 (485)
                      .+| ||+|||++++|+||++++.||++|+||++|.+|+|.+||++|.+||+|.+|+|++++++..++.++++|+.++...
T Consensus       406 ~~g-~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~  484 (534)
T PRK05852        406 TDG-WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP  484 (534)
T ss_pred             cCC-CcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCC
Confidence            578 9999999999999999999999999999999999999999999999999999999999888999999999877666


Q ss_pred             CCHHHHHHHHHhhCCCC
Q psy5016         469 LNADDIRTFCKGKVSKF  485 (485)
Q Consensus       469 ~~~~~l~~~l~~~l~~y  485 (485)
                      .+.++|.++|+++|++|
T Consensus       485 ~~~~~i~~~~~~~l~~~  501 (534)
T PRK05852        485 PTAEELVQFCRERLAAF  501 (534)
T ss_pred             CCHHHHHHHHHHhcccc
Confidence            78899999999999876

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-32  Score=289.08  Aligned_cols=242  Identities=18%  Similarity=0.174  Sum_probs=195.4

Q ss_pred             CcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH------------------------
Q psy5016         229 GFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT------------------------  283 (485)
Q Consensus       229 gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~------------------------  283 (485)
                      .+.++|||||||.||.++++|.+...+.......+.+...+..... |++|.++..                        
T Consensus       145 ~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~  224 (487)
T PRK07638        145 PFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVL  224 (487)
T ss_pred             cEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHH
Confidence            4678999999999999999999877776666555555533222211 555543211                        


Q ss_pred             -------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----Cc
Q psy5016         284 -------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DV  327 (485)
Q Consensus       284 -------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~  327 (485)
                                                     +..+++|++++.++.+++.+.++.   ..+++.||+||++..     ..
T Consensus       225 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~  301 (487)
T PRK07638        225 DKLETENISVMYTVPTMLESLYKENRVIENKMKIISSGAKWEAEAKEKIKNIFPY---AKLYEFYGASELSFVTALVDEE  301 (487)
T ss_pred             HHHHHcCCeEEEeCcHHHHHHHhCcCcCCceeEEEEcCCCCCHHHHHHHHHHcCC---CeEEEEecCCccCceEEecccc
Confidence                                           111277899999999999988853   445799999997531     12


Q ss_pred             cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEec
Q psy5016         328 KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLRE  404 (485)
Q Consensus       328 ~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~  404 (485)
                      ......++|+|++++.++| |+ +..+++|+.|||+++|+   +++.||+ +++.+.+.+    .+| ||+|||++++|+
T Consensus       302 ~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g-~~~TGDl~~~d~  373 (487)
T PRK07638        302 SERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSP---QFFMGYIIGGVLARELN----ADG-WMTVRDVGYEDE  373 (487)
T ss_pred             cCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecc---cceeeecCCHHHHhhhc----cCC-cEecCccEeEcC
Confidence            2345679999999999999 54 67799999999999999   9999999 666555443    578 999999999999


Q ss_pred             CCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCC
Q psy5016         405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSK  484 (485)
Q Consensus       405 ~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~  484 (485)
                      +|++++.||++|+||++|.+|+|.|||++|.+||+|.+++|++.+++..|+.++++++.    ..+.++++++|+++|++
T Consensus       374 ~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~~~~l~~  449 (487)
T PRK07638        374 EGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQQLKSFCLQRLSS  449 (487)
T ss_pred             CCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999998888999888863    35678999999999887


Q ss_pred             C
Q psy5016         485 F  485 (485)
Q Consensus       485 y  485 (485)
                      |
T Consensus       450 ~  450 (487)
T PRK07638        450 F  450 (487)
T ss_pred             c
Confidence            6

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.1e-31  Score=289.94  Aligned_cols=247  Identities=19%  Similarity=0.157  Sum_probs=199.5

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      .++-+.++|||||||.||.+++++.....+.........+...+...+. |++|.++..                     
T Consensus       196 ~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~  275 (547)
T PRK13295        196 PDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDP  275 (547)
T ss_pred             CcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCH
Confidence            3455677999999999999999999877776665555555432222222 555544321                     


Q ss_pred             ---------------------h------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         284 ---------------------L------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       284 ---------------------~------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                           +                  ..+++|+++++++.+.+.+.++    ..+++.||+||++.
T Consensus       276 ~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~~  351 (547)
T PRK13295        276 ARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALG----AKIVSAWGMTENGA  351 (547)
T ss_pred             HHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhC----CCeEEeccCCCCCC
Confidence                                 0                  0127899999999999998885    45679999999743


Q ss_pred             CCc------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         325 KDV------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       325 ~~~------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      ...      ......++|+|+++++++| |+ +..++.|+.|||+|+|+   +++.||+ +++.++..     .+| ||+
T Consensus       352 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~-----~~g-~~~  422 (547)
T PRK13295        352 VTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGC---SNFGGYLKRPQLNGTD-----ADG-WFD  422 (547)
T ss_pred             eeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCCCeEEEEcC---cccccccCCccccccC-----CCC-Cee
Confidence            111      1123468999999999999 65 56689999999999999   9999999 77776653     478 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR  475 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  475 (485)
                      |||+++++++|++++.||.+|+||++|++|+|.+||++|.+|++|.+++|++++++..++.++++|+++++...+.+++.
T Consensus       423 TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~  502 (547)
T PRK13295        423 TGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMV  502 (547)
T ss_pred             cceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999889999999999877667778999


Q ss_pred             HHHHh-hCCCC
Q psy5016         476 TFCKG-KVSKF  485 (485)
Q Consensus       476 ~~l~~-~l~~y  485 (485)
                      +++++ +|++|
T Consensus       503 ~~~~~~~l~~~  513 (547)
T PRK13295        503 EFLKAQKVAKQ  513 (547)
T ss_pred             HHHHhccCccc
Confidence            99986 67765

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=9.3e-32  Score=284.22  Aligned_cols=237  Identities=17%  Similarity=0.131  Sum_probs=184.7

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchhhccchhhhHh--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKTL--------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~--------------------  284 (485)
                      .....+.++|||||||.||.++++|.+.........+.+.+.......+.|++|.++...                    
T Consensus       118 ~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~  197 (452)
T PRK07445        118 NLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQVNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLK  197 (452)
T ss_pred             CCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCCCceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhcc
Confidence            345667779999999999999999988776666555444443211122237777654320                    


Q ss_pred             ------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCc-
Q psy5016         285 ------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV-  327 (485)
Q Consensus       285 ------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~-  327 (485)
                                                          ..++||+++++++.+.+.+ ++    ..+++.||+||++.... 
T Consensus       198 ~~~~~~~~~~~t~~~~vP~~l~~l~~~~~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~----~~l~~~YG~TE~~~~~~~  272 (452)
T PRK07445        198 SGQELPPNPSDFFLSLVPTQLQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQ-LQ----LRLAPTYGMTETASQIAT  272 (452)
T ss_pred             chhhhhhhcCceEEEehHHHHHHHHhhChhhhhcceEEEECCccCCHHHHHHHHh-cC----CeEecCcchhhhcccccc
Confidence                                                0016777787777776654 23    34679999999742111 


Q ss_pred             ---c--CccccCcccccCCcEEEEcCCCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEE
Q psy5016         328 ---K--NYLITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVL  402 (485)
Q Consensus       328 ---~--~~~~~s~G~p~pg~~v~Id~~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~  402 (485)
                         .  .....++|+|+|+++++|.      +|+.|||+++|+   +++.||++..     +   +.+| ||+|||++++
T Consensus       273 ~~~~~~~~~~~~~G~~~p~~~v~i~------~g~~Gel~v~g~---~~~~gY~~~~-----~---~~~g-~~~TGDl~~~  334 (452)
T PRK07445        273 LKPDDFLAGNNSSGQVLPHAQITIP------ANQTGNITIQAQ---SLALGYYPQI-----L---DSQG-IFETDDLGYL  334 (452)
T ss_pred             cCchhhccCCCcCCccCCCCeEEEc------CCCcceEEEeCC---ccchhhcCCc-----c---CCCC-EEECCCEEEE
Confidence               1  1245689999999999984      366799999999   9999999421     1   2467 9999999999


Q ss_pred             ecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhC
Q psy5016         403 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV  482 (485)
Q Consensus       403 d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l  482 (485)
                      |+||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++++++.+++ ..+.++++++|+++|
T Consensus       335 d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L  413 (452)
T PRK07445        335 DAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQL  413 (452)
T ss_pred             cCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999889999999998765 456889999999999


Q ss_pred             CCC
Q psy5016         483 SKF  485 (485)
Q Consensus       483 ~~y  485 (485)
                      ++|
T Consensus       414 ~~~  416 (452)
T PRK07445        414 SPF  416 (452)
T ss_pred             Ccc
Confidence            876

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-31  Score=295.13  Aligned_cols=193  Identities=16%  Similarity=0.088  Sum_probs=161.9

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC--------CccCccccCcccccCCcEEEE-cC--CCCCCCCC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK--------DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRK  356 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~--------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~  356 (485)
                      ++|+++++++.+++.+.++    ..+++.||+||++..        .....+++++|+|+||++++| |+  +..+++|+
T Consensus       362 ~~Ge~l~~~~~~~~~~~~~----~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~  437 (629)
T PRK10524        362 LAGEPLDEPTASWISEALG----VPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE  437 (629)
T ss_pred             EeCCCCCHHHHHHHHHhcC----CCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC
Confidence            8899999999999988886    456799999997521        112345689999999999999 64  66799999


Q ss_pred             ceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016         357 VALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ  435 (485)
Q Consensus       357 ~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~  435 (485)
                      .|||+++||+|.+.+.+|| +++.+...+.....++ ||+|||++++|+||+++|.||.||+||++|++|+|.|||++|.
T Consensus       438 ~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~  516 (629)
T PRK10524        438 KGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQ-VYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS  516 (629)
T ss_pred             cEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCc-EEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHH
Confidence            9999999997557889999 7766554431112356 9999999999999999999999999999999999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC--------HHHHHHHHHhhCCCC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN--------ADDIRTFCKGKVSKF  485 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~--------~~~l~~~l~~~l~~y  485 (485)
                      +||+|.+++|++++++..|+.+++||+++++...+        .++|+++|+++|++|
T Consensus       517 ~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~  574 (629)
T PRK10524        517 SHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAV  574 (629)
T ss_pred             hCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCC
Confidence            99999999999999998899999999998754332        357899999999875

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=8.6e-32  Score=289.37  Aligned_cols=247  Identities=18%  Similarity=0.193  Sum_probs=199.7

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL---------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~---------------------  284 (485)
                      ..-+.++|||||||.||.++++|.....+.....+...++..+...+. |++|.++...                     
T Consensus       183 ~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~  262 (527)
T TIGR02275       183 DEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSP  262 (527)
T ss_pred             CccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCH
Confidence            455677999999999999999999877766655555555422222222 6666443210                     


Q ss_pred             ----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         285 ----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       285 ----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                              ..++||+++++++++.+.+.++    ..+++.||+||++.
T Consensus       263 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g----~~~~~~YG~tE~~~  338 (527)
T TIGR02275       263 TDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFG----CQLQQVFGMAEGLV  338 (527)
T ss_pred             HHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhC----CeEEeeeccCccCc
Confidence                                                    0127899999999999988886    45689999999642


Q ss_pred             C-----CccCccccCccccc-CCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         325 K-----DVKNYLITPALKGL-YHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       325 ~-----~~~~~~~~s~G~p~-pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      .     .......+++|+|+ ++..++| |+ +..+++|+.|||+++|+   +++.||| +++.+...+   +.+| ||+
T Consensus       339 ~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~---~~~~gY~~~~~~~~~~~---~~dg-~~~  411 (527)
T TIGR02275       339 NYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGP---YTFRGYYKAPEHNAAAF---DAEG-FYY  411 (527)
T ss_pred             cccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCC---ccchhhcCChhHhHhhc---CcCC-CEE
Confidence            1     11223456899999 5889999 54 66789999999999999   9999999 788887777   5778 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR  475 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  475 (485)
                      |||++++|++|++++.||.+|+|+++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|+++++ ..+..+|.
T Consensus       412 TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~~l~  490 (527)
T TIGR02275       412 TGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAAQLR  490 (527)
T ss_pred             cCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888999999998765 46788999


Q ss_pred             HHHHhh-CCCC
Q psy5016         476 TFCKGK-VSKF  485 (485)
Q Consensus       476 ~~l~~~-l~~y  485 (485)
                      ++++++ +++|
T Consensus       491 ~~l~~~~l~~~  501 (527)
T TIGR02275       491 RFLRERGLAEY  501 (527)
T ss_pred             HHHHhCCCccc
Confidence            999985 8765

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-31  Score=284.54  Aligned_cols=247  Identities=17%  Similarity=0.124  Sum_probs=192.8

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH----------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT----------------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~----------------------  283 (485)
                      ..-+.++|||||||.||.+.+++.+.......+.....+...+...+. |++|.++..                      
T Consensus       135 ~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  214 (488)
T PRK09088        135 ERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPK  214 (488)
T ss_pred             CCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHH
Confidence            445667999999999999999998876655444332222211111111 444443321                      


Q ss_pred             ----------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         284 ----------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       284 ----------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                              -..++||++++..+.+.+.+. +    ..+++.||+||++
T Consensus       215 ~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g----~~v~~~YG~TE~~  289 (488)
T PRK09088        215 RTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD-G----IPMVDGFGMSEAG  289 (488)
T ss_pred             HHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh-C----Cceeeeecccccc
Confidence                                                    001277888888777666543 2    4457999999975


Q ss_pred             CCC-------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCe
Q psy5016         324 FKD-------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRS  393 (485)
Q Consensus       324 ~~~-------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~  393 (485)
                      ...       .....++++|+|+|+++++| |+ +..++.|+.|||+++|+   +++.||+ +++.+++.+   +.+| |
T Consensus       290 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~---~~~~gY~~~~~~~~~~~---~~~g-~  362 (488)
T PRK09088        290 TVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGP---NLSPGYWRRPQATARAF---TGDG-W  362 (488)
T ss_pred             cccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECC---ccchhhcCChhhhhhhh---cCCC-C
Confidence            311       11235678999999999999 64 56689999999999999   9999999 777777666   4578 9


Q ss_pred             EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHH
Q psy5016         394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADD  473 (485)
Q Consensus       394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~  473 (485)
                      |+|||+|++|++|+++|.||.+|+|+++|.+|+|.+||++|.++|.|.+++|++++++..|+.++++|++.++...+.++
T Consensus       363 ~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~  442 (488)
T PRK09088        363 FRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLER  442 (488)
T ss_pred             eeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999987888899999988766667889


Q ss_pred             HHHHHHhhCCCC
Q psy5016         474 IRTFCKGKVSKF  485 (485)
Q Consensus       474 l~~~l~~~l~~y  485 (485)
                      +.++|++++++|
T Consensus       443 l~~~~~~~l~~~  454 (488)
T PRK09088        443 IRSHLSTRLAKY  454 (488)
T ss_pred             HHHHHHhhCcCC
Confidence            999999999876

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-31  Score=298.95  Aligned_cols=185  Identities=17%  Similarity=0.144  Sum_probs=158.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC----CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTW  361 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~  361 (485)
                      +||+++++++.+++.+.|+.   ..+++.||+||++..    .......+++|+|+++++++| |+ +..+++|+.|||+
T Consensus       267 ~gGe~l~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~  343 (705)
T PRK06060        267 SAGEALELGLAERLMEFFGG---IPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLW  343 (705)
T ss_pred             EecCcCCHHHHHHHHHHcCC---CceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEE
Confidence            78999999999999988863   446799999997531    122345678999999999999 65 6678999999999


Q ss_pred             EecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCc
Q psy5016         362 PNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV  440 (485)
Q Consensus       362 v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V  440 (485)
                      |+|+   +++.||| +++.+   +   ..+| ||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|
T Consensus       344 i~g~---~v~~GY~~~~~~~---~---~~~~-~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V  413 (705)
T PRK06060        344 VRGP---AIAKGYWNRPDSP---V---ANEG-WLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAV  413 (705)
T ss_pred             Eccc---hhhhhhhCCCccc---c---cCCC-cEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCe
Confidence            9999   9999999 56542   2   2456 999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH---HHHHHHHHhhCCCC
Q psy5016         441 LEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       441 ~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~y  485 (485)
                      .+++|++++++..++.+++||+..++...+.   .+++++|+++|++|
T Consensus       414 ~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~  461 (705)
T PRK06060        414 AEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAF  461 (705)
T ss_pred             eEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCC
Confidence            9999999999888889999999876654443   47888999999876

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.3e-31  Score=295.44  Aligned_cols=192  Identities=15%  Similarity=0.022  Sum_probs=159.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC--C---CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM--F---KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~--~---~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|+++++++++++.+.++.  ...+.+.||+||++  .   ........+++|+|.+|++++| |+ +..+ +|+.|||
T Consensus       391 ~gGe~l~~~~~~~~~~~~~~--~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl  467 (652)
T TIGR01217       391 STGSPLPPDGFRWVYDEIKA--DVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPV-TGEVGEL  467 (652)
T ss_pred             eecCCCCHHHHHHHHHHhCC--CceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCC-CCCccEE
Confidence            88999999999999988763  13346889999952  1   1112344678999999999999 65 5556 5999999


Q ss_pred             EEecCCCCccccccc-Ccccccc--cccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEE--NITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~--~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~  437 (485)
                      +++|++| +++.||| +++.+..  .+ +...+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+|
T Consensus       468 ~v~gp~p-~~~~gy~~~~~~t~~~~~~-~~~~~g-~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~  544 (652)
T TIGR01217       468 VCTNPMP-SMPIRFWNDPDGSKYRDAY-FDTYPG-VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERL  544 (652)
T ss_pred             EEecCCC-ccccceeCCCccchhHHhh-hcCCCC-EEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhC
Confidence            9999877 8999999 6665431  11 011257 999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH---HHHHHHHHhhCCCC
Q psy5016         438 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~y  485 (485)
                      |+|.||+||+++++..|+.+++||+++++...+.   ++|+++|+++|++|
T Consensus       545 p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~  595 (652)
T TIGR01217       545 DEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPR  595 (652)
T ss_pred             CCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999999999988765554   58999999999876

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.98  E-value=7.9e-32  Score=299.18  Aligned_cols=164  Identities=12%  Similarity=0.008  Sum_probs=139.2

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----CCccCccccCccccc-CCcEEEE-cCC--CCCCCCCceE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----KDVKNYLITPALKGL-YHFKKWM-NPK--FSTTTRKVAL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~~~~~~~~~s~G~p~-pg~~v~I-d~~--~~~~~g~~Ge  359 (485)
                      +||+++++++.+++...++    ..++++||+||++.    .......++++|+|+ |+++++| |..  ...+.+..||
T Consensus       468 sGGapl~~~~~~~~~~~~g----~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GE  543 (746)
T PTZ00342        468 NGGGKLSPKIAEELSVLLN----VNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGE  543 (746)
T ss_pred             EcCCCCCHHHHHHHHHhcC----CCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceE
Confidence            7889999999999988776    44579999999742    222345678999998 9999999 632  2334455799


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEE-ECcEeeChHHHHHHHHcC
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~-~~G~~v~p~eIE~~l~~~  437 (485)
                      |+++||   ++|.||| +++.|++.|   +.+| ||+|||+|++|+||+|+|+||+||+|| .+|++|+|.+||++|.+|
T Consensus       544 l~vrGp---~v~~GY~~~pe~T~~~f---~~dG-W~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~  616 (746)
T PTZ00342        544 LLIKSD---SIFSGYFLEKEQTKNAF---TEDG-YFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQI  616 (746)
T ss_pred             EEEecC---cccccccCChhhhhhhc---CcCC-cccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcC
Confidence            999999   9999999 899999988   5688 999999999999999999999999999 589999999999999999


Q ss_pred             CCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         438 PNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                      |.|.+|+|+|...   ...++|+|+++.
T Consensus       617 p~V~~~~VvG~~~---~~~~~Alvv~d~  641 (746)
T PTZ00342        617 SFINFCVVYGDDS---MDGPLAIISVDK  641 (746)
T ss_pred             CCccEEEEEccCC---ccccEEEEECCH
Confidence            9999999999632   336889998753

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.98  E-value=2.4e-31  Score=287.12  Aligned_cols=250  Identities=18%  Similarity=0.109  Sum_probs=200.2

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh-------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS-------------------  285 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~-------------------  285 (485)
                      ..+-+.++|||||||.||.++++|.............+.+...+..... |++|.++....                   
T Consensus       179 ~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~  258 (542)
T PRK06155        179 PGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSAS  258 (542)
T ss_pred             CCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHH
Confidence            3456678999999999999999998876666555555555533322222 66666543200                   


Q ss_pred             ---------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC
Q psy5016         286 ---------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD  326 (485)
Q Consensus       286 ---------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~  326 (485)
                                                             ...+ ..+++.+.+.+.+.++    ..+++.||+||++...
T Consensus       259 ~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~~----~~v~~~YG~tE~~~~~  333 (542)
T PRK06155        259 GFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALG-PGVPAALHAAFRERFG----VDLLDGYGSTETNFVI  333 (542)
T ss_pred             HHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEE-cCCCHHHHHHHHHHcC----CCEEeeecccccCccc
Confidence                                                   0022 2356777777777776    4567999999975321


Q ss_pred             ---ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceE
Q psy5016         327 ---VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQF  400 (485)
Q Consensus       327 ---~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~  400 (485)
                         .....++++|.|+++++++| |+ +..++.|+.|||+++|+.|.+++.||+ +++.+...|    .++ ||+|||++
T Consensus       334 ~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~----~~~-~~~TGD~~  408 (542)
T PRK06155        334 AVTHGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW----RNL-WFHTGDRV  408 (542)
T ss_pred             cCCCCCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh----cCC-cEeccceE
Confidence               12446778999999999999 54 667899999999999986556999999 777777777    578 99999999


Q ss_pred             EEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHh
Q psy5016         401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG  480 (485)
Q Consensus       401 ~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~  480 (485)
                      ++|+||+++|+||.+|+||++|.+|+|.|||++|.+||+|.+++|++++++..++.+.++++++++...+..+++++|++
T Consensus       409 ~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  488 (542)
T PRK06155        409 VRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEP  488 (542)
T ss_pred             EEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999888889999999888777888999999999


Q ss_pred             hCCCC
Q psy5016         481 KVSKF  485 (485)
Q Consensus       481 ~l~~y  485 (485)
                      +|++|
T Consensus       489 ~l~~~  493 (542)
T PRK06155        489 RLAYF  493 (542)
T ss_pred             hCcCc
Confidence            99876

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.98  E-value=2.3e-31  Score=282.12  Aligned_cols=247  Identities=18%  Similarity=0.116  Sum_probs=197.0

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccch-hhccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKC-EKSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~~~~~~--------------------  284 (485)
                      ..+-+.++|||||||.||.++++|.+.......+...+.+...+.... .|++|.++...                    
T Consensus       127 ~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~  206 (471)
T PRK07787        127 PDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTP  206 (471)
T ss_pred             CCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCH
Confidence            345567799999999999999999987777665555555442222111 15555443320                    


Q ss_pred             --------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-
Q psy5016         285 --------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-  325 (485)
Q Consensus       285 --------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-  325 (485)
                                                            ..+.||+++++++++++.+.++    ..+++.||+||++.. 
T Consensus       207 ~~~~~~i~~~~t~~~~~P~~~~~l~~~~~~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~  282 (471)
T PRK07787        207 EAYAQALSEGGTLYFGVPTVWSRIAADPEAARALRGARLLVSGSAALPVPVFDRLAALTG----HRPVERYGMTETLITL  282 (471)
T ss_pred             HHHHHHHhhCceEEEcchHHHHHHHhCccccccccceeEEEECCCCCCHHHHHHHHHHcC----CCeecccCccccCcce
Confidence                                                  0127889999999999988876    446799999997532 


Q ss_pred             ---CccCccccCcccccCCcEEEE-cC-CCCCC-CCC-ceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecC
Q psy5016         326 ---DVKNYLITPALKGLYHFKKWM-NP-KFSTT-TRK-VALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEK  397 (485)
Q Consensus       326 ---~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~-~g~-~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TG  397 (485)
                         ......++++|+|+++++++| |+ +..++ .|+ +|||+++|+   +++.||+ +++.+.+.|   .++| ||+||
T Consensus       283 ~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~---~~~~gy~~~~~~t~~~~---~~~~-~~~TG  355 (471)
T PRK07787        283 STRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGP---TLFDGYLNRPDATAAAF---TADG-WFRTG  355 (471)
T ss_pred             ecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECc---ccchhhcCChhhchhcc---cCCC-ceecC
Confidence               122345678999999999999 54 45565 344 899999999   9999999 888888777   4578 99999


Q ss_pred             ceEEEecCCeEEEEecC-CCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016         398 DQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT  476 (485)
Q Consensus       398 D~~~~d~~G~l~i~GR~-~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  476 (485)
                      |+|++|+||++++.||+ +|+++++|.+|+|.|||++|.+++.|.+++|++.+++..++.++++|+..+  ..+.+++.+
T Consensus       356 Dlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~  433 (471)
T PRK07787        356 DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD--DVAADELID  433 (471)
T ss_pred             ceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC--CCCHHHHHH
Confidence            99999999999999996 899999999999999999999999999999999999888899999999743  467889999


Q ss_pred             HHHhhCCCC
Q psy5016         477 FCKGKVSKF  485 (485)
Q Consensus       477 ~l~~~l~~y  485 (485)
                      +|+++|++|
T Consensus       434 ~l~~~l~~~  442 (471)
T PRK07787        434 FVAQQLSVH  442 (471)
T ss_pred             HHHhhcccc
Confidence            999999876

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.98  E-value=2.8e-31  Score=286.79  Aligned_cols=250  Identities=24%  Similarity=0.397  Sum_probs=201.1

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      ...-+.++|||||||.||.+++++.+...+........++...+..... |++|.++...                    
T Consensus       200 ~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~  279 (558)
T PRK12583        200 RDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFD  279 (558)
T ss_pred             CCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCC
Confidence            4455678999999999999999998877666555444444322211111 4455444320                    


Q ss_pred             -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                               ..+++|+++++++++++.+.++.   ..+++.||+||++
T Consensus       280 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~---~~i~~~YG~tE~~  356 (558)
T PRK12583        280 PLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHM---AEVQIAYGMTETS  356 (558)
T ss_pred             HHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcCC---cceeccccccccc
Confidence                                                     01378999999999999888763   4467999999975


Q ss_pred             CCC-------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCe
Q psy5016         324 FKD-------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRS  393 (485)
Q Consensus       324 ~~~-------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~  393 (485)
                      ...       .......++|+|+|++.++| |+ +..++.|+.|||+++|+   +++.||+ +++.+...+   +.++ |
T Consensus       357 ~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~---~~~~-~  429 (558)
T PRK12583        357 PVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGY---SVMKGYWNNPEATAESI---DEDG-W  429 (558)
T ss_pred             cceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeC---ccchhhcCChHHHHhhc---CCCC-C
Confidence            321       11235679999999999999 65 56689999999999999   9999999 676666655   4677 9


Q ss_pred             EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHH
Q psy5016         394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADD  473 (485)
Q Consensus       394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~  473 (485)
                      |+|||++++|++|++++.||.+|+||++|.+|+|.+||++|.+||+|.+++|++++++..++.++++++++++...+.++
T Consensus       430 ~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  509 (558)
T PRK12583        430 MHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEE  509 (558)
T ss_pred             eeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999988889999999988776677899


Q ss_pred             HHHHHHhhCCCC
Q psy5016         474 IRTFCKGKVSKF  485 (485)
Q Consensus       474 l~~~l~~~l~~y  485 (485)
                      ++++|+++|++|
T Consensus       510 i~~~~~~~L~~~  521 (558)
T PRK12583        510 LREFCKARIAHF  521 (558)
T ss_pred             HHHHHHhhcccC
Confidence            999999999876

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.98  E-value=3.9e-31  Score=284.98  Aligned_cols=247  Identities=19%  Similarity=0.146  Sum_probs=196.1

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ..+-+.++|||||||.||.++++|.............+.+...+...+. |++|.++..                     
T Consensus       194 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~  273 (538)
T TIGR03208       194 PDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNP  273 (538)
T ss_pred             CCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCH
Confidence            3455667999999999999999998877766665555554422222222 555543321                     


Q ss_pred             ---------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         284 ---------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       284 ---------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                             ...+++|+++++.+.+++.+.++    ..+++.||+||++.
T Consensus       274 ~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~  349 (538)
T TIGR03208       274 ARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLG----ALIVSAWGMTENGA  349 (538)
T ss_pred             HHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcC----CeEEeeeccCcCCC
Confidence                                                   00127889999999999888776    44679999999743


Q ss_pred             CCc------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         325 KDV------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       325 ~~~------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      ...      ......++|+|+|+++++| |+ +..++.|+.|||+++|+   +++.||+ +++.+.  .   +.+| ||+
T Consensus       350 ~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~--~---~~~~-~~~  420 (538)
T TIGR03208       350 VTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGC---SNFGGYLKRPHLNS--T---DAEG-WFD  420 (538)
T ss_pred             ccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCCcEEEEecC---cccccccCCccccc--c---cCCC-cee
Confidence            111      1122457999999999999 54 66789999999999999   9999999 666553  2   3567 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR  475 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  475 (485)
                      |||++++|++|+++++||.+|+||++|++|+|.|||++|.+||+|.+++|++.++...++.+.+++++.++...+.+++.
T Consensus       421 TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~  500 (538)
T TIGR03208       421 TGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMV  500 (538)
T ss_pred             ccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999877677888999


Q ss_pred             HHHHh-hCCCC
Q psy5016         476 TFCKG-KVSKF  485 (485)
Q Consensus       476 ~~l~~-~l~~y  485 (485)
                      +++++ +++.|
T Consensus       501 ~~~~~~~l~~~  511 (538)
T TIGR03208       501 AFLKAQKVALQ  511 (538)
T ss_pred             HHHHhcchhhc
Confidence            99985 67654

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.98  E-value=1.5e-31  Score=288.79  Aligned_cols=188  Identities=21%  Similarity=0.210  Sum_probs=164.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCc-----c----CccccCcccccCCcEEEE-cC--CCCCCCC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV-----K----NYLITPALKGLYHFKKWM-NP--KFSTTTR  355 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~-----~----~~~~~s~G~p~pg~~v~I-d~--~~~~~~g  355 (485)
                      ++|+++++++++++.+.|+.   ..+++.||+||++....     .    .....++|+|+|+++++| |+  +..+++|
T Consensus       310 ~~g~~l~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g  386 (546)
T PLN02330        310 TAAAPLAPELLTAFEAKFPG---VQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKN  386 (546)
T ss_pred             EcCCcCCHHHHHHHHHHcCC---CeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCC
Confidence            78999999999999998842   45689999999743111     1    123468999999999999 63  5668999


Q ss_pred             CceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHH
Q psy5016         356 KVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI  434 (485)
Q Consensus       356 ~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l  434 (485)
                      +.|||+++|+   +++.||+ +++.+++.+   +.+| ||+|||++++++||++++.||.+|+|+++|++|+|.+||++|
T Consensus       387 ~~Gel~v~g~---~~~~gy~~~~~~~~~~~---~~~g-~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l  459 (546)
T PLN02330        387 TPGELCVRSQ---CVMQGYYNNKEETDRTI---DEDG-WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL  459 (546)
T ss_pred             CceEEEEecc---hhhhhhccCccchhhhc---cCCC-ceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHH
Confidence            9999999999   9999999 777777666   5678 999999999999999999999999999999999999999999


Q ss_pred             HcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       435 ~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      .++|.|.+++|++++++..|+.+.++|++.++...+.++|+++++++|++|
T Consensus       460 ~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~  510 (546)
T PLN02330        460 LTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHY  510 (546)
T ss_pred             HhCCchheEEEEeccccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccc
Confidence            999999999999999998999999999998776677889999999999876

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.98  E-value=4.4e-31  Score=291.43  Aligned_cols=192  Identities=13%  Similarity=-0.015  Sum_probs=160.2

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|+++++++++++.+.++.  ...+++.||+||++..     ......++++|+|++|++++| |+ +..+ +|++|||
T Consensus       390 ~~Ge~l~~~~~~~~~~~~~~--~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL  466 (655)
T PRK03584        390 STGSPLPPEGFDWVYEHVKA--DVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGEL  466 (655)
T ss_pred             EecCCCCHHHHHHHHHHhCC--CceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEE
Confidence            88999999999999998852  2456799999996321     122346789999999999999 65 5556 7999999


Q ss_pred             EEecCCCCccccccc-Ccccccc--cccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEE--NITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~--~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~  437 (485)
                      +|++++| +++.||| +++.++.  .+ +...+| ||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+|
T Consensus       467 ~v~gp~p-~~~~gy~~~~~~~~~~~~~-~~~~~g-~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~  543 (655)
T PRK03584        467 VCTKPFP-SMPLGFWNDPDGSRYRDAY-FDTFPG-VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEAL  543 (655)
T ss_pred             EEccCCC-CCcceeeCCCccchHHHhh-hccCCC-EeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhC
Confidence            9999877 8999999 6654431  11 011256 899999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH---HHHHHHHHhhCCCC
Q psy5016         438 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~y  485 (485)
                      |+|.+|+|++.+++..++.+++||+++++...+.   ++|+++|+++|++|
T Consensus       544 p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~  594 (655)
T PRK03584        544 PEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPR  594 (655)
T ss_pred             CCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCC
Confidence            9999999999999889999999999988755543   58999999999876

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.98  E-value=4.1e-31  Score=281.81  Aligned_cols=249  Identities=19%  Similarity=0.170  Sum_probs=202.8

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      ..+.+.++|||||||.||.++++|...............+...+...+. |++|.++...                    
T Consensus       155 ~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~  234 (504)
T PRK07514        155 ADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDP  234 (504)
T ss_pred             CCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCH
Confidence            4556778999999999999999999887776655544444422221111 5555444210                    


Q ss_pred             --------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC
Q psy5016         285 --------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD  326 (485)
Q Consensus       285 --------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~  326 (485)
                                                            ..++||+++++++.+.+.+.++    ..+++.||+||++...
T Consensus       235 ~~~~~~i~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~  310 (504)
T PRK07514        235 DAVLALMPRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG----HAILERYGMTETNMNT  310 (504)
T ss_pred             HHHHHHHHhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC----Ccceeecccccccccc
Confidence                                                  0127889999999999998876    4467999999975321


Q ss_pred             ----ccCccccCcccccCCcEEEE-c-C-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCc
Q psy5016         327 ----VKNYLITPALKGLYHFKKWM-N-P-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKD  398 (485)
Q Consensus       327 ----~~~~~~~s~G~p~pg~~v~I-d-~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD  398 (485)
                          .......++|.|+++++++| | + +..++.|+.|||+++|+   +++.||+ +++.+++.|   ..+| ||+|||
T Consensus       311 ~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~---~~~~-~~~TGD  383 (504)
T PRK07514        311 SNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGP---NVFKGYWRMPEKTAEEF---RADG-FFITGD  383 (504)
T ss_pred             cCCccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecC---CccccccCCchhhhhhc---ccCC-Ceeecc
Confidence                12334678999999999999 7 3 55689999999999999   9999999 788887777   4577 999999


Q ss_pred             eEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHH
Q psy5016         399 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC  478 (485)
Q Consensus       399 ~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l  478 (485)
                      ++++|++|++++.||+||+||++|.+|+|.|||++|.++++|.+++|++++++..++.++++++.+++...+.+++.+++
T Consensus       384 l~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  463 (504)
T PRK07514        384 LGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAAL  463 (504)
T ss_pred             eEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888999999999887777889999999


Q ss_pred             HhhCCCC
Q psy5016         479 KGKVSKF  485 (485)
Q Consensus       479 ~~~l~~y  485 (485)
                      +++|++|
T Consensus       464 ~~~l~~~  470 (504)
T PRK07514        464 KGRLARF  470 (504)
T ss_pred             HhhcccC
Confidence            9998875

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.97  E-value=2.9e-31  Score=286.09  Aligned_cols=246  Identities=21%  Similarity=0.220  Sum_probs=199.2

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL---------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~---------------------  284 (485)
                      ++-+.++|||||||.||.++++|.+...+.......+.++..+...+. |++|.++...                     
T Consensus       182 ~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~  261 (536)
T PRK10946        182 DEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSA  261 (536)
T ss_pred             CCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCH
Confidence            455667999999999999999999988877766655565533222221 5555433210                     


Q ss_pred             ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                                ..++||+++++.+.+.+.+.++    ..+++.||+||+
T Consensus       262 ~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g----~~~~~~YG~tE~  337 (536)
T PRK10946        262 TLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELG----CQLQQVFGMAEG  337 (536)
T ss_pred             HHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcC----CeEEEeeccccc
Confidence                                                      0127788889999888887776    456799999996


Q ss_pred             CCC-----CccCccccCccccc-CCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCe
Q psy5016         323 MFK-----DVKNYLITPALKGL-YHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRS  393 (485)
Q Consensus       323 ~~~-----~~~~~~~~s~G~p~-pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~  393 (485)
                      ...     ........++|+|+ |++.++| |+ +..+++|++|||+++|+   +++.||| +++.+.+.|   +.++ |
T Consensus       338 ~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~---~~~~GY~~~~~~t~~~~---~~d~-~  410 (536)
T PRK10946        338 LVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGP---YTFRGYYKSPQHNASAF---DANG-F  410 (536)
T ss_pred             ceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecC---ccchhhcCCcccchhhc---ccCC-c
Confidence            421     11223467899999 8999999 64 67799999999999999   9999999 787777777   5678 9


Q ss_pred             EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHH
Q psy5016         394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADD  473 (485)
Q Consensus       394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~  473 (485)
                      |+|||++++|++|++++.||.+|+|+++|.+|+|.|||++|.+||+|.+++|++.+++..|+.++++++++++  .+.++
T Consensus       411 ~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~~~  488 (536)
T PRK10946        411 YCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKAVQ  488 (536)
T ss_pred             eecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999889999999998764  77889


Q ss_pred             HHHHHHhh-CCCC
Q psy5016         474 IRTFCKGK-VSKF  485 (485)
Q Consensus       474 l~~~l~~~-l~~y  485 (485)
                      +.++++++ |++|
T Consensus       489 l~~~~~~~~l~~~  501 (536)
T PRK10946        489 LRRFLREQGIAEF  501 (536)
T ss_pred             HHHHHHhCCcccc
Confidence            99999885 7765

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=1.1e-31  Score=293.94  Aligned_cols=191  Identities=18%  Similarity=0.145  Sum_probs=154.4

Q ss_pred             hccCCCCCHHHHHHHHhhhhhccc--CccccccccCCCCCC----Ccc---------------------------Ccccc
Q psy5016         287 EYNSYAGPVTLRRNLIDPLEIVQN--RIDDVEYEFQEKMFK----DVK---------------------------NYLIT  333 (485)
Q Consensus       287 l~~g~~~~~~l~~~~~~~~~~~~~--~~i~~~YG~TEt~~~----~~~---------------------------~~~~~  333 (485)
                      ++||+++++++.+++.+.|+..+.  ..+++.||+||++..    ...                           ....+
T Consensus       323 ~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  402 (612)
T PRK12476        323 IIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHV  402 (612)
T ss_pred             EecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeE
Confidence            467889999999999988854332  246799999996421    000                           01235


Q ss_pred             CcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc---------------cCCCCCeE
Q psy5016         334 PALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV---------------PDSAGRSI  394 (485)
Q Consensus       334 s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~---------------~~~~g~~~  394 (485)
                      ++|+|+|+++++| |+  +..+++|+.|||+++|+   +++.||| +++.+++.|..               .+.++ ||
T Consensus       403 ~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~-w~  478 (612)
T PRK12476        403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGD---NIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGT-WL  478 (612)
T ss_pred             eCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCC---cccccccCChHHHHHHHhhhhccccccccccccccCCCC-ee
Confidence            8999999999999 64  56799999999999999   9999999 88888887721               01234 99


Q ss_pred             ecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHc-CCCccE--EEEEEEeCCCCCcEEEEEEEEcCCCC-CC
Q psy5016         395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPDERMGEEVGISIKLKENAK-LN  470 (485)
Q Consensus       395 ~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~-~~~V~e--a~vv~~~~~~~g~~~~a~vv~~~~~~-~~  470 (485)
                      +|||+|+++ ||+|+|+||+||+||++|++|+|.|||++|.+ ||.|.+  ++|++++++. ++.++++++++++.. .+
T Consensus       479 ~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~  556 (612)
T PRK12476        479 RTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRAD  556 (612)
T ss_pred             eccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCccccc
Confidence            999999985 99999999999999999999999999999985 899999  7788888876 789999999887643 56


Q ss_pred             HHHHHHHHHhhCC
Q psy5016         471 ADDIRTFCKGKVS  483 (485)
Q Consensus       471 ~~~l~~~l~~~l~  483 (485)
                      .++|.++|+++|+
T Consensus       557 ~~~l~~~~~~~l~  569 (612)
T PRK12476        557 PAPAIDAIRAAVS  569 (612)
T ss_pred             HHHHHHHHHHHHH
Confidence            7788888887765

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3.9e-31  Score=284.12  Aligned_cols=186  Identities=21%  Similarity=0.224  Sum_probs=163.0

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCc------------cCccccCcccccCCcEEEE-cC-CCCCC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV------------KNYLITPALKGLYHFKKWM-NP-KFSTT  353 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~------------~~~~~~s~G~p~pg~~v~I-d~-~~~~~  353 (485)
                      ++|+++++.+.+++.+.++    ..+++.||+||++....            .....+++|+|+++++++| |+ +..++
T Consensus       287 ~gG~~l~~~~~~~~~~~~g----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~  362 (528)
T PRK07470        287 YAGAPMYRADQKRALAKLG----KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELP  362 (528)
T ss_pred             EcCCCCCHHHHHHHHHHhC----cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCC
Confidence            7889999999988888776    34579999999642110            1234678999999999999 54 66789


Q ss_pred             CCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHH
Q psy5016         354 TRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE  432 (485)
Q Consensus       354 ~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~  432 (485)
                      .|+.|||+++|+   +++.||+ +++.+++.|    .+| ||+|||++++|++|++++.||.||+||++|++|+|.+||+
T Consensus       363 ~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~----~~~-~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~  434 (528)
T PRK07470        363 PGETGEICVIGP---AVFAGYYNNPEANAKAF----RDG-WFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEE  434 (528)
T ss_pred             CCCceEEEEeCC---ccchhhcCCHHHHHhhh----cCC-cEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHH
Confidence            999999999999   9999999 777777766    578 9999999999999999999999999999999999999999


Q ss_pred             HHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         433 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       433 ~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      +|.++|.|.+++|++.+++..++.++++++..++...+.++++++|+++|++|
T Consensus       435 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  487 (528)
T PRK07470        435 KLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARY  487 (528)
T ss_pred             HHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcC
Confidence            99999999999999999988889999999988776678899999999999876

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=5.3e-31  Score=285.59  Aligned_cols=186  Identities=22%  Similarity=0.250  Sum_probs=161.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|+++++.+.+.+.+.++    ..+++.||+||++...     ......+++|+|+++++++| |+ +..+++|+.|||
T Consensus       340 ~gG~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel  415 (562)
T PRK12492        340 SGGTALVKATAERWEQLTG----CTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGEL  415 (562)
T ss_pred             eccccCCHHHHHHHHHHhC----CceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCceEE
Confidence            7889999999988888776    4567999999964311     11234578999999999999 65 566899999999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  439 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~  439 (485)
                      +|+|+   +++.||| +++.+.+.|   +.+| ||+|||+|++|++|+++|.||.||+||++|++|+|.|||++|.+||.
T Consensus       416 ~v~g~---~~~~gY~~~~~~t~~~~---~~~g-~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~  488 (562)
T PRK12492        416 CIKGP---QVMKGYWQQPEATAEAL---DAEG-WFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPK  488 (562)
T ss_pred             EEeCC---ccccccccCchhhhhcc---cCCC-ceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCC
Confidence            99999   9999999 888888777   4567 99999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         440 VLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       440 V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      |.+++|++.++...++.+.++++..+. ..+.++++++++++|++|
T Consensus       489 v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~  533 (562)
T PRK12492        489 VANCAAIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGY  533 (562)
T ss_pred             eeEEEEEeccCCCCCceEEEEEEeCCC-CCCHHHHHHHHHHhcccc
Confidence            999999999998888999999887653 457789999999999876

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.97  E-value=6.9e-31  Score=282.85  Aligned_cols=246  Identities=15%  Similarity=0.129  Sum_probs=193.5

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      .....+.++|||||||.||.+++++.....+.......++++..+...+. |++|.++..                    
T Consensus       150 ~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~  229 (529)
T PRK07867        150 DPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFS  229 (529)
T ss_pred             CccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCC
Confidence            34556678999999999999999999887776666666665532222211 555554432                    


Q ss_pred             ---------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         284 ---------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       284 ---------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                             +..++||+++++. .+++.+.++    ..+++.||+||++.
T Consensus       230 ~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~~~gg~~~~~~-~~~~~~~~g----~~l~~~YG~TE~~~  304 (529)
T PRK07867        230 ASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGD-IARFARRFG----CVVVDGFGSTEGGV  304 (529)
T ss_pred             HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEEEecCCCChHH-HHHHHHHhC----CcEEEeeccccccc
Confidence                                                   0011456666654 355666665    45679999999753


Q ss_pred             C--CccCccccCcccccCCcEEEE-c--CCCCCCCCC------------ceEEEE-ecCCCCccccccc-Cccccccccc
Q psy5016         325 K--DVKNYLITPALKGLYHFKKWM-N--PKFSTTTRK------------VALTWP-NSMDSEARIYHYK-KYLREEENIT  385 (485)
Q Consensus       325 ~--~~~~~~~~s~G~p~pg~~v~I-d--~~~~~~~g~------------~Gel~v-~g~~~~~~~~gY~-~~~~~~~~~~  385 (485)
                      .  .......+++|+|+++  ++| |  .+..++.|+            +|||++ +|+   +++.||+ +++.+...| 
T Consensus       305 ~~~~~~~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~---~~~~gy~~~~~~~~~~~-  378 (529)
T PRK07867        305 AITRTPDTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGP---GGFEGYYNDPEADAERM-  378 (529)
T ss_pred             ccccCCCCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCC---cccccccCChHhhhhhh-
Confidence            1  1122346789999999  555 5  356688888            999999 999   9999999 788887777 


Q ss_pred             ccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         386 VPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       386 ~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                         .+| ||+|||++++|++|+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.+++++++.+
T Consensus       379 ---~~g-~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~  454 (529)
T PRK07867        379 ---RGG-VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAP  454 (529)
T ss_pred             ---cCC-eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECC
Confidence               578 9999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCHHHHHHHHHhh--CCCC
Q psy5016         466 NAKLNADDIRTFCKGK--VSKF  485 (485)
Q Consensus       466 ~~~~~~~~l~~~l~~~--l~~y  485 (485)
                      +...+.++++++|+++  |++|
T Consensus       455 ~~~~~~~~l~~~~~~~~~l~~~  476 (529)
T PRK07867        455 GAKFDPDAFAEFLAAQPDLGPK  476 (529)
T ss_pred             CCCCCHHHHHHHHHhhccCCcc
Confidence            8778899999999875  7664

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.97  E-value=5.1e-31  Score=293.90  Aligned_cols=245  Identities=10%  Similarity=-0.015  Sum_probs=187.2

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL---------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~---------------------  284 (485)
                      +..+.++|||||||.||.++++|.+............+++..+...+. |++|.++...                     
T Consensus       365 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~  444 (718)
T PRK08043        365 EDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHY  444 (718)
T ss_pred             CCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccH
Confidence            455678999999999999999999887766655554555433322222 6666554320                     


Q ss_pred             --------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC--
Q psy5016         285 --------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF--  324 (485)
Q Consensus       285 --------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~--  324 (485)
                                                            ..++||+++++++.+.+.+.|+    ..+++.||+||++.  
T Consensus       445 ~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g----~~l~~~YG~TE~~~~~  520 (718)
T PRK08043        445 RIVPELVYDRNCTVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFG----LRILEGYGVTECAPVV  520 (718)
T ss_pred             HHHHHHHHhcCCeEEEchHHHHHHhhhhcCcccccceEEEEEeCccCCHHHHHHHHHHcC----CCeecccCcccccceE
Confidence                                                  0017789999999999888876    44679999999742  


Q ss_pred             --CCccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCcccccccC---cccccccc----cccCCCCCeE
Q psy5016         325 --KDVKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYKK---YLREEENI----TVPDSAGRSI  394 (485)
Q Consensus       325 --~~~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~~---~~~~~~~~----~~~~~~g~~~  394 (485)
                        .......++++|+|+||++++| |+..   .++.|||+++|+   +++.|||+   ++.+...+    .....+| ||
T Consensus       521 ~~~~~~~~~~~svG~p~pg~~~~i~d~~~---~~~~Gel~v~g~---~v~~GY~~~e~~~~~~~~~~~~~~~~~~~g-w~  593 (718)
T PRK08043        521 SINVPMAAKPGTVGRILPGMDARLLSVPG---IEQGGRLQLKGP---NIMNGYLRVEKPGVLEVPTAENARGEMERG-WY  593 (718)
T ss_pred             EecCCcccCCCCCCCcCCCCeeEEecCCC---CCCceEEEEecC---CccccccCCCCcccccccccccccccccCC-eE
Confidence              1122346789999999999999 6532   245699999999   99999994   22111000    0012467 99


Q ss_pred             ecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHH
Q psy5016         395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDI  474 (485)
Q Consensus       395 ~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l  474 (485)
                      +|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+|+.+.+++|++.+++..|+.++++++   +...+.+++
T Consensus       594 ~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~~~~l  670 (718)
T PRK08043        594 DTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSELTREKL  670 (718)
T ss_pred             ecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---CcccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888998888764   345678899


Q ss_pred             HHHHHhh-CCCC
Q psy5016         475 RTFCKGK-VSKF  485 (485)
Q Consensus       475 ~~~l~~~-l~~y  485 (485)
                      +++|+++ |+.|
T Consensus       671 ~~~~~~~~l~~~  682 (718)
T PRK08043        671 QQYAREHGVPEL  682 (718)
T ss_pred             HHHHHhcCCCcc
Confidence            9999987 8775

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.1e-30  Score=278.90  Aligned_cols=252  Identities=22%  Similarity=0.267  Sum_probs=202.7

Q ss_pred             ccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh------------------
Q psy5016         224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL------------------  284 (485)
Q Consensus       224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~------------------  284 (485)
                      ......+.++|||||||.||.+.+++...............+...+...+. |++|.++...                  
T Consensus       163 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  242 (513)
T PRK07656        163 VDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVF  242 (513)
T ss_pred             CCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcC
Confidence            344556677999999999999999999876666555544444422222222 5555443220                  


Q ss_pred             ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                                ..+++|+++++++++.+.+.++.   ..+++.||+||+
T Consensus       243 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~---~~~~~~YG~tE~  319 (513)
T PRK07656        243 DPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA  319 (513)
T ss_pred             CHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCC---CceEeEEccccC
Confidence                                                      01278999999999999988873   356899999997


Q ss_pred             CCCC-----ccC--ccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016         323 MFKD-----VKN--YLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       323 ~~~~-----~~~--~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      +...     ...  ..++++|+|+++++++| |+ +..++.|+.|||+++|+   +++.||+ ++..+...+   ..+| 
T Consensus       320 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~~-  392 (513)
T PRK07656        320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGP---NVMKGYYDDPEATAAAI---DADG-  392 (513)
T ss_pred             CCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEcc---hhhhhhcCCHHHHhhhh---ccCC-
Confidence            4211     111  22678999999999999 55 67789999999999999   9999999 777776666   3478 


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD  472 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  472 (485)
                      ||+|||+|+++++|++++.||.+|+||++|.+|+|.+||++|.++++|.+++|++.+++..|+.+.++|+.+++...+.+
T Consensus       393 ~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~  472 (513)
T PRK07656        393 WLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEE  472 (513)
T ss_pred             ceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999876677889


Q ss_pred             HHHHHHHhhCCCC
Q psy5016         473 DIRTFCKGKVSKF  485 (485)
Q Consensus       473 ~l~~~l~~~l~~y  485 (485)
                      +|.++|+++|++|
T Consensus       473 ~l~~~~~~~l~~~  485 (513)
T PRK07656        473 ELIAYCREHLAKY  485 (513)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999999875

>PRK08315 AMP-binding domain protein; Validated

Probab=99.97  E-value=8.5e-31  Score=283.26  Aligned_cols=250  Identities=28%  Similarity=0.432  Sum_probs=200.7

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ....+.++|||||||.||.+.+++.+...+.........+...+..... |++|.++..                     
T Consensus       198 ~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~  277 (559)
T PRK08315        198 PDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFD  277 (559)
T ss_pred             CCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCC
Confidence            3455678999999999999999998877666665555555422221111 444443321                     


Q ss_pred             ---------------------------------------hh-hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         284 ---------------------------------------LS-SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       284 ---------------------------------------~~-~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                             +. .+++|+++++++++.+.+.++.   ..+++.||+||++
T Consensus       278 ~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~  354 (559)
T PRK08315        278 PLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHM---SEVTIAYGMTETS  354 (559)
T ss_pred             HHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCC---cceeEEEcccccc
Confidence                                                   00 1378899999999998888763   4467999999975


Q ss_pred             CCC-------ccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016         324 FKD-------VKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       324 ~~~-------~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      ...       .....+.++|+|+|+++++| |+  +..++.|+.|||+|+|+   +++.||| +++.+...+   ..++ 
T Consensus       355 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~---~~~~gy~~~~~~~~~~~---~~~~-  427 (559)
T PRK08315        355 PVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGY---SVMKGYWNDPEKTAEAI---DADG-  427 (559)
T ss_pred             cceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECc---hhhhhhcCChhHHhhcC---CCCC-
Confidence            311       11234679999999999999 64  56689999999999999   9999999 777777665   4567 


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD  472 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  472 (485)
                      ||+|||++++|++|++++.||.+|+||++|.+|+|.|||++|.++|+|.+++|++++++..++.++++|++.++...+.+
T Consensus       428 ~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~  507 (559)
T PRK08315        428 WMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEE  507 (559)
T ss_pred             CEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999998888899999998877677889


Q ss_pred             HHHHHHHhhCCCC
Q psy5016         473 DIRTFCKGKVSKF  485 (485)
Q Consensus       473 ~l~~~l~~~l~~y  485 (485)
                      +++++++++|+.|
T Consensus       508 ~l~~~l~~~l~~~  520 (559)
T PRK08315        508 DVRDFCRGKIAHY  520 (559)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999999876

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.2e-30  Score=283.26  Aligned_cols=249  Identities=20%  Similarity=0.227  Sum_probs=198.3

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcc-cCCCcccccc--hhhccchhhhHhh----------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK-SDIDWEYADK--CEKSMQGWAKTLS----------------  285 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~-~~~~~~~~~~--~~pl~~~~~~~~~----------------  285 (485)
                      ....-+.++|||||||.||.+++++.....+....... ..+.......  ..|++|.++..+.                
T Consensus       217 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  296 (573)
T PRK05605        217 TPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA  296 (573)
T ss_pred             CCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence            34566778999999999999999998876555432211 1111111111  1256665543200                


Q ss_pred             --------------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         286 --------------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       286 --------------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                  .+++|+++++++.+.+.+.++    ..+++.||+||
T Consensus       297 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~----~~i~~~YG~TE  372 (573)
T PRK05605        297 PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTG----GLLVEGYGLTE  372 (573)
T ss_pred             CCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHhC----CCeecccccch
Confidence                                                        027888899999888887765    45679999999


Q ss_pred             CCCC-----CccCccccCcccccCCcEEEE-cCC---CCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCC
Q psy5016         322 KMFK-----DVKNYLITPALKGLYHFKKWM-NPK---FSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAG  391 (485)
Q Consensus       322 t~~~-----~~~~~~~~s~G~p~pg~~v~I-d~~---~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g  391 (485)
                      ++..     ......++++|+|+|++.++| |+.   ..++.|+.|||+++|+   .++.||+ +++.+.+.|    .+|
T Consensus       373 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g  445 (573)
T PRK05605        373 TSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGP---QVFKGYWNRPEETAKSF----LDG  445 (573)
T ss_pred             hchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecC---chhhhhcCChhHhhhcc----cCC
Confidence            7421     112334679999999999999 653   5688999999999999   9999999 788877777    568


Q ss_pred             CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016         392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA  471 (485)
Q Consensus       392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~  471 (485)
                       ||+|||++++|++|++++.||.||+||++|.+|+|.|||++|.+|+.|.+++|++.+++..++.++++++++++...+.
T Consensus       446 -~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~  524 (573)
T PRK05605        446 -WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDP  524 (573)
T ss_pred             -CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCH
Confidence             9999999999999999999999999999999999999999999999999999999999888899999999988777788


Q ss_pred             HHHHHHHHhhCCCC
Q psy5016         472 DDIRTFCKGKVSKF  485 (485)
Q Consensus       472 ~~l~~~l~~~l~~y  485 (485)
                      ++|+++++++|++|
T Consensus       525 ~~l~~~~~~~l~~~  538 (573)
T PRK05605        525 EGLRAYCREHLTRY  538 (573)
T ss_pred             HHHHHHHHHhCccc
Confidence            99999999998875

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.97  E-value=9.3e-31  Score=280.29  Aligned_cols=187  Identities=17%  Similarity=0.244  Sum_probs=158.5

Q ss_pred             CCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEe
Q psy5016         291 YAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPN  363 (485)
Q Consensus       291 ~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~  363 (485)
                      .++++++...+.+.++    ..+++.||+||++..     ........++|+|+++++++| |+ +..++.|+.|||+++
T Consensus       297 ~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~  372 (517)
T PRK08008        297 LNLSDQEKDAFEERFG----VRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIK  372 (517)
T ss_pred             cCCCHHHHHHHHHHhC----CeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEe
Confidence            3456666666666655    456799999997431     112234568999999999999 54 677899999999999


Q ss_pred             cCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccE
Q psy5016         364 SMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE  442 (485)
Q Consensus       364 g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~e  442 (485)
                      |+...+++.||| +++.+++.|   ..+| ||+|||++++|++|++++.||.+|+||++|.+|+|.+||++|.+|+.|.+
T Consensus       373 g~~~~~~~~gy~~~~~~~~~~~---~~~g-~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~  448 (517)
T PRK08008        373 GVPGKTIFKEYYLDPKATAKVL---EADG-WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQD  448 (517)
T ss_pred             CCCCcchhhhHhCChHHHhhcc---cCCC-CeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceee
Confidence            831118999999 888888877   5678 99999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         443 AYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       443 a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      ++|++++++..++.+.++|+++++...+.++|.++|++++++|
T Consensus       449 ~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  491 (517)
T PRK08008        449 IVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKF  491 (517)
T ss_pred             EEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccc
Confidence            9999999988889999999999877778899999999998876

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.97  E-value=3.5e-31  Score=293.96  Aligned_cols=167  Identities=14%  Similarity=0.023  Sum_probs=136.0

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----CCccCccccCcccccCCcEEEE-c-C-CCCC---CCCCc
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----KDVKNYLITPALKGLYHFKKWM-N-P-KFST---TTRKV  357 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~~~~~~~~~s~G~p~pg~~v~I-d-~-~~~~---~~g~~  357 (485)
                      +||+++++++.+.+...++    ..++++||+||++.    ........+++|+|+|+++++| | + +...   .++..
T Consensus       427 ~GGapl~~~~~~~~~~~~g----~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~  502 (696)
T PLN02387        427 SGGAPLSGDTQRFINICLG----APIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPR  502 (696)
T ss_pred             EcCCCCCHHHHHHHHHHcC----CCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCC
Confidence            7888999998777766666    44679999999742    2223446789999999999999 7 3 2211   34557


Q ss_pred             eEEEEecCCCCccccccc-CcccccccccccCCCC-CeEecCceEEEecCCeEEEEecCCCeEEE-CcEeeChHHHHHHH
Q psy5016         358 ALTWPNSMDSEARIYHYK-KYLREEENITVPDSAG-RSIFEKDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFI  434 (485)
Q Consensus       358 Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g-~~~~TGD~~~~d~~G~l~i~GR~~d~I~~-~G~~v~p~eIE~~l  434 (485)
                      |||+|+|+   ++|.||| +++.|++.|.. +++| +||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|
T Consensus       503 GEi~vrGp---~v~~GY~~~pe~T~~~f~~-d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l  578 (696)
T PLN02387        503 GEIVIGGP---SVTLGYFKNQEKTDEVYKV-DERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL  578 (696)
T ss_pred             ceEEeccC---cccchhcCCHHHHhhhhcc-ccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHH
Confidence            99999999   9999999 99999988721 2233 49999999999999999999999999997 69999999999999


Q ss_pred             HcCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         435 QTHPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       435 ~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                      .+||.|.+++|++.+.   ...++|+|++++
T Consensus       579 ~~~p~V~~~~V~g~~~---~~~~~a~vv~~~  606 (696)
T PLN02387        579 SVSPYVDNIMVHADPF---HSYCVALVVPSQ  606 (696)
T ss_pred             hcCCCeeEEEEEecCC---cceEEEEEEeCH
Confidence            9999999999999763   235788988864

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.5e-30  Score=278.32  Aligned_cols=251  Identities=22%  Similarity=0.214  Sum_probs=202.6

Q ss_pred             ccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh------------------
Q psy5016         224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL------------------  284 (485)
Q Consensus       224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~------------------  284 (485)
                      .....-+.++|||||||.||.+.++|...............+...+..... |++|..+...                  
T Consensus       168 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~  247 (523)
T PRK08316        168 LADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAP  247 (523)
T ss_pred             CCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCC
Confidence            344555677999999999999999998877665544444444422222211 5555443210                  


Q ss_pred             ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                                ..++||+++++++.+.+.+.++.   ..+++.||+||+
T Consensus       248 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~---~~~~~~YG~tE~  324 (523)
T PRK08316        248 DPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPG---LRFYNCYGQTEI  324 (523)
T ss_pred             CHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCC---Cceeeeeccccc
Confidence                                                      01278999999999999988753   456799999997


Q ss_pred             CCCC------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCe
Q psy5016         323 MFKD------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRS  393 (485)
Q Consensus       323 ~~~~------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~  393 (485)
                      +...      ......+++|+|+++++++| |+ +..++.|+.|||+++|+   +++.||+ +++.+++.|    .++ |
T Consensus       325 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~---~~~~~y~~~~~~~~~~~----~~~-~  396 (523)
T PRK08316        325 APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSP---QLMLGYWDDPEKTAEAF----RGG-W  396 (523)
T ss_pred             CccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECC---chhhhhcCCHHHHHHHh----hCC-C
Confidence            5311      11244679999999999999 64 66789999999999999   9999999 888777777    577 9


Q ss_pred             EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHH
Q psy5016         394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADD  473 (485)
Q Consensus       394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~  473 (485)
                      |+|||+|++|+||++++.||.+|+||++|.+|+|.+||+.|.++++|.+++|++.+++..++.++++++++++...+.++
T Consensus       397 ~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  476 (523)
T PRK08316        397 FHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDE  476 (523)
T ss_pred             eeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999998899999999998776677889


Q ss_pred             HHHHHHhhCCCC
Q psy5016         474 IRTFCKGKVSKF  485 (485)
Q Consensus       474 l~~~l~~~l~~y  485 (485)
                      +.++++++|++|
T Consensus       477 l~~~~~~~l~~~  488 (523)
T PRK08316        477 LIAHCRARLAGF  488 (523)
T ss_pred             HHHHHHHhcccC
Confidence            999999998875

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=1.6e-30  Score=275.79  Aligned_cols=244  Identities=19%  Similarity=0.179  Sum_probs=195.0

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL---------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~---------------------  284 (485)
                      .+...++|||||||.||.+++++.+............+++..+..... |++|..+...                     
T Consensus       141 ~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~  220 (483)
T PRK03640        141 DEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEK  220 (483)
T ss_pred             CCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHH
Confidence            445667999999999999999998776665554444555422222111 5555543320                     


Q ss_pred             -------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-
Q psy5016         285 -------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-  326 (485)
Q Consensus       285 -------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-  326 (485)
                                                           ..+++|+++++.+.+.+.+. +    ..+++.||+||++... 
T Consensus       221 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~-~----~~~~~~YG~tE~~~~~~  295 (483)
T PRK03640        221 INKLLQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRCMLLGGGPAPKPLLEQCKEK-G----IPVYQSYGMTETASQIV  295 (483)
T ss_pred             HHHHHHHhCCcEEEeHHHHHHHHHhCcCccccCCcceEEEEcCCCCCHHHHHHHHHh-C----CCeeeeeccCccccccc
Confidence                                                 00167888998888777653 3    4467999999964311 


Q ss_pred             -----ccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCce
Q psy5016         327 -----VKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQ  399 (485)
Q Consensus       327 -----~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~  399 (485)
                           .....++++|+|+++++++| |++..++.|+.|||+++|+   +++.||+ +++.+...|    .+| ||+|||+
T Consensus       296 ~~~~~~~~~~~~~vG~p~~~~~~~i~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~----~~~-~~~tGDl  367 (483)
T PRK03640        296 TLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGP---NVTKGYLNREDATRETF----QDG-WFKTGDI  367 (483)
T ss_pred             ccCcccccccCCCcccccCCcEEEEecCCCcCCCCCceEEEEECc---chhhhhcCCHHHHHHHH----hcC-Ceeccce
Confidence                 12345689999999999999 7777899999999999999   9999999 777777777    578 9999999


Q ss_pred             EEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHH
Q psy5016         400 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK  479 (485)
Q Consensus       400 ~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~  479 (485)
                      +++++||++++.||++|++|++|.+|+|.+||+++.++++|.+++|++.+++..++.++++++..  ...+.++++++|+
T Consensus       368 ~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~  445 (483)
T PRK03640        368 GYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEEELRHFCE  445 (483)
T ss_pred             EEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888898988854  3577889999999


Q ss_pred             hhCCCC
Q psy5016         480 GKVSKF  485 (485)
Q Consensus       480 ~~l~~y  485 (485)
                      ++|++|
T Consensus       446 ~~l~~~  451 (483)
T PRK03640        446 EKLAKY  451 (483)
T ss_pred             HhccCC
Confidence            999876

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=2.6e-30  Score=277.16  Aligned_cols=184  Identities=24%  Similarity=0.288  Sum_probs=159.7

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|+++++++++.+.+.|+    ..+++.||+||++...     .....++++|+|+|+++++| |+ +..+++|+.|||
T Consensus       299 ~gG~~l~~~~~~~~~~~~g----~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel  374 (516)
T PRK13383        299 SSGDRLDPTLGQRFMDTYG----DILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRI  374 (516)
T ss_pred             ECCCCCCHHHHHHHHHHcC----chhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEE
Confidence            7899999999999999887    3467999999975311     11234678999999999999 54 667899999999


Q ss_pred             EEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCc
Q psy5016         361 WPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV  440 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V  440 (485)
                      +++|+   .++.||++...  ..+    .+| ||+|||++++|++|++++.||.+|+||++|.+|+|.|||++|.+||.|
T Consensus       375 ~v~g~---~~~~~Y~~~~~--~~~----~~g-~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v  444 (516)
T PRK13383        375 FVGGE---LAGTRYTDGGG--KAV----VDG-MTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAV  444 (516)
T ss_pred             EEecC---cccccccCCch--hhe----ecC-ceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCe
Confidence            99999   99999994432  222    468 999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         441 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       441 ~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      .+++++++++...++.+.++|+++++...+.+++++++++++++|
T Consensus       445 ~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  489 (516)
T PRK13383        445 ADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRF  489 (516)
T ss_pred             eEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccC
Confidence            999999999988899999999998776677889999999998875

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.97  E-value=2.1e-30  Score=276.90  Aligned_cols=252  Identities=14%  Similarity=0.100  Sum_probs=200.3

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL---------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~---------------------  284 (485)
                      .+.+.++|||||||.||.+++++...........+...+...+...+. |++|.++...                     
T Consensus       161 ~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  240 (515)
T TIGR03098       161 SDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRD  240 (515)
T ss_pred             CCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHH
Confidence            455677999999999999999999987777665555544422222212 5555433320                     


Q ss_pred             -------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC--
Q psy5016         285 -------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK--  325 (485)
Q Consensus       285 -------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~--  325 (485)
                                                           ..+++|+++++++++.+.+.++.   ..+++.||+||++..  
T Consensus       241 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~  317 (515)
T TIGR03098       241 VLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPN---ARLFLMYGLTEAFRSTY  317 (515)
T ss_pred             HHHHHHHcCCceEecChHHHHHHHhcccCCCCccceEEEEecCCcCCHHHHHHHHHHCCC---CeEeeeeccccccceEe
Confidence                                                 01168999999999999988753   456899999997421  


Q ss_pred             ---CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc--------CCCC
Q psy5016         326 ---DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP--------DSAG  391 (485)
Q Consensus       326 ---~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~--------~~~g  391 (485)
                         .....+++++|+|+++++++| |+ +..++.|+.|||+++|+   .++.||| +++.+...|...        ..++
T Consensus       318 ~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (515)
T TIGR03098       318 LPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGA---LVAMGYWNDPEKTAERFRPLPPRPGELHLPEL  394 (515)
T ss_pred             cccccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCc---hhhccccCCchhhhhhhhccCCcccccccccc
Confidence               112345789999999999999 54 56688999999999999   9999999 677665554210        0133


Q ss_pred             CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016         392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA  471 (485)
Q Consensus       392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~  471 (485)
                       ||+|||+|++|++|++++.||.+|+||++|.+|+|.|||++|.+||.|.+++|++++++..|+.++++++..++...+.
T Consensus       395 -~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~  473 (515)
T TIGR03098       395 -AVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDR  473 (515)
T ss_pred             -ceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCH
Confidence             8999999999999999999999999999999999999999999999999999999999989999999998776667788


Q ss_pred             HHHHHHHHhhCCCC
Q psy5016         472 DDIRTFCKGKVSKF  485 (485)
Q Consensus       472 ~~l~~~l~~~l~~y  485 (485)
                      .+|+++++++|++|
T Consensus       474 ~~l~~~l~~~l~~~  487 (515)
T TIGR03098       474 AALLAECRARLPNY  487 (515)
T ss_pred             HHHHHHHHhhCccc
Confidence            99999999999875

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>KOG1256|consensus

Probab=99.97  E-value=3.4e-31  Score=280.00  Aligned_cols=165  Identities=12%  Similarity=0.033  Sum_probs=145.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC----CCCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM----FKDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~----~~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel  360 (485)
                      +|++|+++++.+.++..++    ..++++||+|||+    .....+...+++|.|+|++++++ |.  -+--+.|..|||
T Consensus       426 sGaAPls~ev~~F~r~~~g----~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEI  501 (691)
T KOG1256|consen  426 SGAAPLSPEVLTFFRAALG----CRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEI  501 (691)
T ss_pred             ecCCCCCHHHHHHHHHhcC----ceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceE
Confidence            9999999999999999887    5567999999975    23444457999999999999999 64  233456668999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEE-ECcEeeChHHHHHHHHcCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~-~~G~~v~p~eIE~~l~~~~  438 (485)
                      ||+|+   ++|.||| ||+.|++++   |+|| |+||||+|++|++|.|.|+||+|++|| ..|++|.|..||++..+.+
T Consensus       502 cirG~---~Vf~GYyK~p~~T~e~i---deDG-WLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~  574 (691)
T KOG1256|consen  502 CVRGP---NVFMGYYKDPEKTAEAI---DEDG-WLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSL  574 (691)
T ss_pred             EEecc---hhceeccCChHHHhhhh---cccc-ccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCC
Confidence            99999   9999999 999999999   8999 999999999999999999999999999 6999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                      .|.+.+|.+-...   ..++|.|+++..
T Consensus       575 ~V~qi~V~g~s~~---~~LvaiVvpd~e  599 (691)
T KOG1256|consen  575 PVQQIFVLGDSLR---SFLVAIVVPDPE  599 (691)
T ss_pred             ceEEEEEECCcch---hcEEEEEecChh
Confidence            9999999987654   368999998753

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.9e-30  Score=279.93  Aligned_cols=250  Identities=14%  Similarity=0.071  Sum_probs=192.0

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcc-cCCCcccccch-hhccchhhhHh---hhh------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK-SDIDWEYADKC-EKSMQGWAKTL---SSE------------  287 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~-~~~~~~~~~~~-~pl~~~~~~~~---~~l------------  287 (485)
                      ..+..+.++|||||||.||.++++|.+...+....... ......+.... .|++|.++...   ..+            
T Consensus       207 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~  286 (567)
T PRK06178        207 ALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARW  286 (567)
T ss_pred             CCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCC
Confidence            34556778999999999999999998866554433221 22221111111 26666655320   000            


Q ss_pred             -----------------------------------------------ccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         288 -----------------------------------------------YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       288 -----------------------------------------------~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                                                     ..++++++++.+.+.+.++.   ..+.+.||+|
T Consensus       287 ~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~YG~t  363 (567)
T PRK06178        287 DAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGS---VLAEAAWGMT  363 (567)
T ss_pred             CHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhCC---cccccccccc
Confidence                                                           22355666666666666652   3333579999


Q ss_pred             CCCCCC------c-----cCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Cccccccccc
Q psy5016         321 EKMFKD------V-----KNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENIT  385 (485)
Q Consensus       321 Et~~~~------~-----~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~  385 (485)
                      |++...      .     ....++++|+|+||++++| |+  +..++.|++|||+++|+   +++.||| +++.++..| 
T Consensus       364 E~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~---~v~~gY~~~~~~~~~~~-  439 (567)
T PRK06178        364 ETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTP---SLLKGYWNKPEATAEAL-  439 (567)
T ss_pred             cccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECC---cccccccCChhhhhhcc-
Confidence            964210      0     0234567999999999999 73  56689999999999999   9999999 777777766 


Q ss_pred             ccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         386 VPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       386 ~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                         .+| ||+|||+++++++|+++|+||.+|+|+++|.+|+|.|||++|.++++|.+++|++.+++..++.++++|++++
T Consensus       440 ---~dg-~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~  515 (567)
T PRK06178        440 ---RDG-WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKP  515 (567)
T ss_pred             ---cCC-ceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCC
Confidence               578 9999999999999999999999999999999999999999999999999999999999888899999999987


Q ss_pred             CCCCCHHHHHHHHHhhCCCC
Q psy5016         466 NAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       466 ~~~~~~~~l~~~l~~~l~~y  485 (485)
                      +...+.++|.+++++++++|
T Consensus       516 ~~~~~~~~l~~~~~~~l~~~  535 (567)
T PRK06178        516 GADLTAAALQAWCRENMAVY  535 (567)
T ss_pred             CCcCCHHHHHHHHHhcCccc
Confidence            76778899999999999876

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=1.3e-30  Score=304.35  Aligned_cols=250  Identities=13%  Similarity=0.046  Sum_probs=198.7

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ..++-+.++|||||||.||.+.++|.....+.....+...++..+...+. |++|.++...                   
T Consensus       780 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~  859 (1146)
T PRK08633        780 KPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPT  859 (1146)
T ss_pred             CCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCC
Confidence            34556778999999999999999999887777666666655533322222 6666554421                   


Q ss_pred             ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                                ..++||+++++++.+.+.+.++    ..+++.||+||+
T Consensus       860 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g----~~~~~~YG~tE~  935 (1146)
T PRK08633        860 DALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFG----IRILEGYGATET  935 (1146)
T ss_pred             CHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhC----CCeecccccccC
Confidence                                                      0017899999999999998886    456799999997


Q ss_pred             CCCC--------------ccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccc
Q psy5016         323 MFKD--------------VKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENI  384 (485)
Q Consensus       323 ~~~~--------------~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~  384 (485)
                      +...              ....+++++|+|+|+++++| |+  +.++++|+.|||+++|+   +++.||+ +++.+++.+
T Consensus       936 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~ 1012 (1146)
T PRK08633        936 SPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGP---QVMKGYLGDPEKTAEVI 1012 (1146)
T ss_pred             cceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCC---CccccccCCccchHHHh
Confidence            4210              01235679999999999999 74  56799999999999999   9999999 888888776


Q ss_pred             cccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC--CccEEEEEEEeCCCCCcEEEEEEE
Q psy5016         385 TVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDERMGEEVGISIK  462 (485)
Q Consensus       385 ~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~--~V~ea~vv~~~~~~~g~~~~a~vv  462 (485)
                      ...+.+| ||+|||++++|+||++++.||.||+||++|++|+|.|||++|.+||  .+.+++|++++++..|+.++++++
T Consensus      1013 ~~~~~~~-~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~ 1091 (1146)
T PRK08633       1013 KDIDGIG-WYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHT 1091 (1146)
T ss_pred             hcCCCCC-eEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEe
Confidence            2111236 9999999999999999999999999999999999999999999999  566899999999999999999988


Q ss_pred             EcCCCCCCHHHHHHHHHh-hCCCC
Q psy5016         463 LKENAKLNADDIRTFCKG-KVSKF  485 (485)
Q Consensus       463 ~~~~~~~~~~~l~~~l~~-~l~~y  485 (485)
                      ..   ..+.+++++++++ ++++|
T Consensus      1092 ~~---~~~~~~l~~~~~~~~l~~~ 1112 (1146)
T PRK08633       1092 CG---AEDVEELKRAIKESGLPNL 1112 (1146)
T ss_pred             cC---ccCHHHHHHHHHhcCCCcc
Confidence            62   3467889988875 57765

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.97  E-value=1.6e-30  Score=309.11  Aligned_cols=253  Identities=15%  Similarity=0.023  Sum_probs=193.2

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      .++.+.++|||||||.||+++++|.+.........+.++++..+..... ++.|..+..                     
T Consensus       414 ~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~  493 (1389)
T TIGR03443       414 PDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIG  493 (1389)
T ss_pred             CCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhcc
Confidence            4556778999999999999999999988777666555555422111101 222211100                     


Q ss_pred             -------------------------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         284 -------------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       284 -------------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                                           + ..+++|+++++.+.+.+.+.++.   ..+++.||+||++..
T Consensus       494 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~~~  570 (1389)
T TIGR03443       494 TPGRLAEWMAKYGATVTHLTPAMGQLLSAQATTPIPSLHHAFFVGDILTKRDCLRLQTLAEN---VCIVNMYGTTETQRA  570 (1389)
T ss_pred             CHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccccCCCccEEEEecccCCHHHHHHHHHhCCC---CEEEECccCCcccee
Confidence                                                 0 01278889998888888776543   456899999997421


Q ss_pred             C-------c-c-------CccccCcccccCCcEEEE-cC---CCCCCCCCceEEEEecCCCCccccccc-Cccccccccc
Q psy5016         326 D-------V-K-------NYLITPALKGLYHFKKWM-NP---KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENIT  385 (485)
Q Consensus       326 ~-------~-~-------~~~~~s~G~p~pg~~v~I-d~---~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~  385 (485)
                      .       . .       .....++|+|+++++++| |+   ...++.|++|||+|+|+   ++++||+ +++.|++.|.
T Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~---~v~~GY~~~p~~t~~~f~  647 (1389)
T TIGR03443       571 VSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAG---GLAEGYLGLPELNAEKFV  647 (1389)
T ss_pred             EEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEeccc---ccchhcCCChhHhhhhcc
Confidence            0       0 0       012467999999999999 65   35689999999999999   9999999 8999988773


Q ss_pred             cc-------------------------CCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCc
Q psy5016         386 VP-------------------------DSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV  440 (485)
Q Consensus       386 ~~-------------------------~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V  440 (485)
                      ..                         ..++ ||+|||+|++++||+|+|+||.||+||++|++|+|.|||++|.+||.|
T Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V  726 (1389)
T TIGR03443       648 NNWFVDPSHWIDLDKENNKPEREFWLGPRDR-LYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLV  726 (1389)
T ss_pred             CCcccCcccccccccccccccccccCCCccc-eeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcch
Confidence            10                         1245 999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCCCcEEEEEEEEcCCC-CC-------------------------CHHHHHHHHHhhCCCC
Q psy5016         441 LEAYAYGVPDERMGEEVGISIKLKENA-KL-------------------------NADDIRTFCKGKVSKF  485 (485)
Q Consensus       441 ~ea~vv~~~~~~~g~~~~a~vv~~~~~-~~-------------------------~~~~l~~~l~~~l~~y  485 (485)
                      .+++|++.+++..++.+++||++.++. ..                         ...+++++|+++|++|
T Consensus       727 ~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y  797 (1389)
T TIGR03443       727 RENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSY  797 (1389)
T ss_pred             heeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcc
Confidence            999999999887888999999976321 10                         1357899999999887

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3.1e-30  Score=276.86  Aligned_cols=245  Identities=18%  Similarity=0.167  Sum_probs=199.9

Q ss_pred             CcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-----------------------
Q psy5016         229 GFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-----------------------  284 (485)
Q Consensus       229 gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-----------------------  284 (485)
                      -+.++|||||||.||.+.+++...............+...+...+. |++|.++..+                       
T Consensus       170 ~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~~~~~~~~~~  249 (524)
T PRK06188        170 IAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLAKFDPAEVLR  249 (524)
T ss_pred             eEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcCCCCHHHHHH
Confidence            5667999999999999999999887777666655555422222222 5555443320                       


Q ss_pred             -----------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC---
Q psy5016         285 -----------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD---  326 (485)
Q Consensus       285 -----------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~---  326 (485)
                                                         ..++||+++++++.+.+.+.++    ..+++.||+||++...   
T Consensus       250 ~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~  325 (524)
T PRK06188        250 AIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFG----PIFAQYYGQTEAPMVITYL  325 (524)
T ss_pred             HHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhC----chhhheeCccccCCceeec
Confidence                                               0127899999998888888776    3467999999973211   


Q ss_pred             -------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016         327 -------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE  396 (485)
Q Consensus       327 -------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T  396 (485)
                             .......++|+|+|++.++| |+ +..++.|+.|||+++|+   .++.||+ +++.+...+    .+| ||+|
T Consensus       326 ~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g-~~~T  397 (524)
T PRK06188        326 RKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGP---LVMDGYWNRPEETAEAF----RDG-WLHT  397 (524)
T ss_pred             CchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECc---chhhhhcCChHHhhhhh----cCC-ceee
Confidence                   11235678999999999999 54 66789999999999999   9999999 777777666    578 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT  476 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  476 (485)
                      ||++++|++|++++.||.+|+|+++|++|+|.+||++|.+|++|.+++|++.+++..++.+.++++++++...+.++|.+
T Consensus       398 GDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  477 (524)
T PRK06188        398 GDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQA  477 (524)
T ss_pred             cceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988899999999998777777889999


Q ss_pred             HHHhhCCCC
Q psy5016         477 FCKGKVSKF  485 (485)
Q Consensus       477 ~l~~~l~~y  485 (485)
                      +|++++++|
T Consensus       478 ~~~~~l~~~  486 (524)
T PRK06188        478 HVKERKGSV  486 (524)
T ss_pred             HHHHhcccC
Confidence            999998765

>KOG1175|consensus

Probab=99.97  E-value=1.8e-30  Score=275.01  Aligned_cols=193  Identities=18%  Similarity=0.078  Sum_probs=165.7

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC-----CCcc-CccccCcccccCCcEEEE-cC-CCCCCCC-Cce
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF-----KDVK-NYLITPALKGLYHFKKWM-NP-KFSTTTR-KVA  358 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~-----~~~~-~~~~~s~G~p~pg~~v~I-d~-~~~~~~g-~~G  358 (485)
                      +.|+|+.++.+.++.+.++.   ..+++.||+||++.     .... +.+++++++|++|+.+.| |+ +.+++++ ..|
T Consensus       366 S~Gepi~~~~~ew~~~~~~~---~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G  442 (626)
T KOG1175|consen  366 SVGEPINPEAWEWWKRVTGL---DPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNG  442 (626)
T ss_pred             ecCccCCcchHHHHHHhcCc---cchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCcee
Confidence            88999999999999999884   25679999999642     2222 688999999999999999 66 6667765 889


Q ss_pred             EEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcC
Q psy5016         359 LTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       359 el~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~  437 (485)
                      +|+++.+||.+.+++|| |++...... +....| +|.|||.+++|+|||+++.||.||+||++|.+++++|||++|.+|
T Consensus       443 ~l~~~~~~P~~~~r~~~~n~erf~~~y-f~k~pg-~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~h  520 (626)
T KOG1175|consen  443 ELRLKPPWPPGMFRTLWGNHERFRAAY-FKKFPG-YYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEH  520 (626)
T ss_pred             EEEEeCCCCccccccccCCHHHhhhhh-cccCCc-eEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhC
Confidence            99999999989999999 777343332 122367 999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH---HHHHHHHHhhCCCC
Q psy5016         438 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~y  485 (485)
                      |.|.|++||+.+++..||.+.|||+++++.....   .+|++++|+.+++|
T Consensus       521 p~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~  571 (626)
T KOG1175|consen  521 PAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPY  571 (626)
T ss_pred             cchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcc
Confidence            9999999999999999999999999999854333   47888888888876

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=3.7e-30  Score=271.84  Aligned_cols=235  Identities=14%  Similarity=0.118  Sum_probs=186.8

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      .....+.++|||||||.||.++++|.............+.....+..... |++|.++...                   
T Consensus       133 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~~~  212 (458)
T PRK09029        133 QPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDKQPL  212 (458)
T ss_pred             CCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCChHHH
Confidence            34555778999999999999999999988877766655555432222212 6666554210                   


Q ss_pred             -------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCc--cCcc
Q psy5016         285 -------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV--KNYL  331 (485)
Q Consensus       285 -------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~--~~~~  331 (485)
                                                     ..++||+++++.+.+.+.+. +    ..+++.||+||++....  ....
T Consensus       213 ~~~i~~~t~~~~~P~~~~~l~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~-g----~~~~~~YG~tE~~~~~~~~~~~~  287 (458)
T PRK09029        213 EQALAGCTHASLVPTQLWRLLDNRSEPLSLKAVLLGGAAIPVELTEQAEQQ-G----IRCWCGYGLTEMASTVCAKRADG  287 (458)
T ss_pred             HHHHhhceeeecChHHHHHHHhccccCCcceEEEECCCCCCHHHHHHHHHc-C----CcEeccccccccCcceeccCCCC
Confidence                                           01278889999888877653 3    44579999999753211  1122


Q ss_pred             ccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEE
Q psy5016         332 ITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQ  409 (485)
Q Consensus       332 ~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~  409 (485)
                      ..++|+|+++++++| +          |||+++|+   +++.||+ +++.+...    ..+| ||+|||+|++| ||+++
T Consensus       288 ~~~~G~~~~~~~~~i~~----------gel~v~g~---~~~~gY~~~~~~~~~~----~~~~-~~~TGD~~~~~-~g~l~  348 (458)
T PRK09029        288 LAGVGSPLPGREVKLVD----------GEIWLRGA---SLALGYWRQGQLVPLV----NDEG-WFATRDRGEWQ-NGELT  348 (458)
T ss_pred             CCCCCCCCCCCEEEEeC----------CEEEEecC---ceeeeeecCccccccc----cCCC-ccCCCCcEEEe-CCEEE
Confidence            457999999999999 6          89999999   9999999 66655432    2567 99999999999 99999


Q ss_pred             EEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       410 i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      |.||++|+||++|.+|+|.|||++|.+||+|.+++|++.+++..++.++++|+++.  ..+.++|+++|+++|++|
T Consensus       349 ~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~l~~~  422 (458)
T PRK09029        349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKLARF  422 (458)
T ss_pred             EecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhhchhc
Confidence            99999999999999999999999999999999999999999989999999998763  357789999999999876

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.97  E-value=3.7e-30  Score=280.18  Aligned_cols=246  Identities=17%  Similarity=0.150  Sum_probs=180.0

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccc-hhhccchhhhH----------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADK-CEKSMQGWAKT----------------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~-~~pl~~~~~~~----------------------  283 (485)
                      ...+.++|||||||.||.++++|....................... ..|++|..+..                      
T Consensus       186 ~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~  265 (579)
T PLN03102        186 HDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPE  265 (579)
T ss_pred             CCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHH
Confidence            4567789999999999999999986543332222222222111111 12455543321                      


Q ss_pred             -------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC
Q psy5016         284 -------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD  326 (485)
Q Consensus       284 -------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~  326 (485)
                                                           ...+++|+++++.+.+++.+ ++    ..+++.||+||++...
T Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g----~~i~~~YG~tE~~~~~  340 (579)
T PLN03102        266 IYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-LG----FQVMHAYGLTEATGPV  340 (579)
T ss_pred             HHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-cC----CeEEeecCccccCccc
Confidence                                                 01136788888888887754 43    3467999999975211


Q ss_pred             c-----------c-------CccccCcccccCCcEEEE-cCCCCCCC--CCceEEEEecCCCCccccccc-Ccccccccc
Q psy5016         327 V-----------K-------NYLITPALKGLYHFKKWM-NPKFSTTT--RKVALTWPNSMDSEARIYHYK-KYLREEENI  384 (485)
Q Consensus       327 ~-----------~-------~~~~~s~G~p~pg~~v~I-d~~~~~~~--g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~  384 (485)
                      .           .       ....+..+.+++++++.. +.+..++.  ++.|||+|+|+   +++.||| +++.+.+.|
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~---~~~~GY~~~~~~t~~~f  417 (579)
T PLN03102        341 LFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGS---SIMKGYLKNPKATSEAF  417 (579)
T ss_pred             cccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECc---chhhhhcCChhhhHhhh
Confidence            0           0       011233444555554443 33445553  46899999999   9999999 888888877


Q ss_pred             cccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016         385 TVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  464 (485)
Q Consensus       385 ~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~  464 (485)
                          .+| ||+|||+|++|+||+++|.||.+|+||++|++|+|.|||++|.+||.|.+++|++++++..++.++++|+++
T Consensus       418 ----~~g-w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~  492 (579)
T PLN03102        418 ----KHG-WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLE  492 (579)
T ss_pred             ----ccC-ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEec
Confidence                578 999999999999999999999999999999999999999999999999999999999998899999999988


Q ss_pred             CCCCC----------CHHHHHHHHHhhCCCC
Q psy5016         465 ENAKL----------NADDIRTFCKGKVSKF  485 (485)
Q Consensus       465 ~~~~~----------~~~~l~~~l~~~l~~y  485 (485)
                      ++...          +..+++++|+++|++|
T Consensus       493 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~  523 (579)
T PLN03102        493 KGETTKEDRVDKLVTRERDLIEYCRENLPHF  523 (579)
T ss_pred             CcccccccccccccccHHHHHHHHHhhcccc
Confidence            65432          3568999999999886

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=4.3e-30  Score=277.32  Aligned_cols=249  Identities=14%  Similarity=0.110  Sum_probs=190.3

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ....-+.++|||||||.||.++++|.+...........+.+...+..... |++|..+...                   
T Consensus       148 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~  227 (540)
T PRK13388        148 DAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFS  227 (540)
T ss_pred             CCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCC
Confidence            34556678999999999999999998877666555555555422221111 5555432210                   


Q ss_pred             ---------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         285 ---------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       285 ---------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                                             .....|++++++..+.+.+.++    ..+++.||+||++..
T Consensus       228 ~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~----~~l~~~YG~tE~~~~  303 (540)
T PRK13388        228 ASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFG----CQVEDGYGSSEGAVI  303 (540)
T ss_pred             HHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhC----Cceecccccccccce
Confidence                                                   0012255667777777777775    456799999997532


Q ss_pred             C--ccCccccCcccccCCcEEEE------------cC-CCCC-CCCCceEEEEe-cCCCCccccccc-Cccccccccccc
Q psy5016         326 D--VKNYLITPALKGLYHFKKWM------------NP-KFST-TTRKVALTWPN-SMDSEARIYHYK-KYLREEENITVP  387 (485)
Q Consensus       326 ~--~~~~~~~s~G~p~pg~~v~I------------d~-~~~~-~~g~~Gel~v~-g~~~~~~~~gY~-~~~~~~~~~~~~  387 (485)
                      .  ......+++|+|++|+++.-            |+ +..+ +++.+|||+++ |+   +++.||+ +++.+++.|   
T Consensus       304 ~~~~~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~---~~~~gY~~~~~~t~~~~---  377 (540)
T PRK13388        304 VVREPGTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGA---GFFEGYYNNPEATAERM---  377 (540)
T ss_pred             eecCCCCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCC---cccccccCChHHHHHHh---
Confidence            1  12245679999999987632            22 1222 34678999998 99   9999999 888888877   


Q ss_pred             CCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC
Q psy5016         388 DSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA  467 (485)
Q Consensus       388 ~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~  467 (485)
                       .+| ||+|||+|++|++|++++.||++|+||++|++|+|.|||++|.+||+|.+|+|++++++..|+.+++++++.++.
T Consensus       378 -~~g-~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~  455 (540)
T PRK13388        378 -RHG-MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGA  455 (540)
T ss_pred             -hcC-ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCC
Confidence             578 999999999999999999999999999999999999999999999999999999999988899999999998877


Q ss_pred             CCCHHHHHHHHHhh--CCCC
Q psy5016         468 KLNADDIRTFCKGK--VSKF  485 (485)
Q Consensus       468 ~~~~~~l~~~l~~~--l~~y  485 (485)
                      ..+.+++.++|+.+  |++|
T Consensus       456 ~~~~~~l~~~l~~~~~l~~~  475 (540)
T PRK13388        456 TFDPDAFAAFLAAQPDLGTK  475 (540)
T ss_pred             cCCHHHHHHHHHhhccCCcc
Confidence            78888999999864  7654

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=4.1e-30  Score=278.53  Aligned_cols=186  Identities=21%  Similarity=0.232  Sum_probs=163.8

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCc-----cCccccCcccccCCcEEEE-cC--CCCCCCCCceE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV-----KNYLITPALKGLYHFKKWM-NP--KFSTTTRKVAL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~-----~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Ge  359 (485)
                      ++|+++++++.+++.+.++    ..+++.||+||++....     ....++++|+|++++.++| |+  +..++.|+.||
T Consensus       330 ~gg~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Ge  405 (563)
T PRK06710        330 SGSAPLPVEVQEKFETVTG----GKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGE  405 (563)
T ss_pred             eCCCcCCHHHHHHHHHhhC----CCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCceE
Confidence            7889999999998888776    44679999999753211     2234578999999999999 63  56689999999


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      |+++|+   .++.||+ +++.+...+    .+| ||+|||++++|++|+++++||.||+|+++|.+|+|.|||++|.+||
T Consensus       406 l~v~g~---~~~~gY~~~~~~~~~~~----~~g-~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~  477 (563)
T PRK06710        406 IVVKGP---QIMKGYWNKPEETAAVL----QDG-WLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHE  477 (563)
T ss_pred             EEEecC---ccchhhhCChHHHhhhc----ccC-cccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCc
Confidence            999999   9999999 888887766    578 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      .|.+++|++.+++..|+.++++++.+++...+.+++.++++++|++|
T Consensus       478 ~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  524 (563)
T PRK06710        478 KVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAY  524 (563)
T ss_pred             ceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHhcccc
Confidence            99999999999988899999999998877778899999999998875

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.97  E-value=7.8e-30  Score=271.84  Aligned_cols=253  Identities=10%  Similarity=-0.026  Sum_probs=192.2

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      .....+.++|||||||.||.+.++|.............+.+...+...+. |++|.++..                    
T Consensus       139 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~  218 (502)
T TIGR01734       139 KGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDIT  218 (502)
T ss_pred             CCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHh
Confidence            34556778999999999999999999887776655555444322211111 333322111                    


Q ss_pred             ------------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         284 ------------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       284 ------------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                ...+++|+++++++.+++.+.++.   ..+++.||+||
T Consensus       219 ~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~---~~~~~~yG~tE  295 (502)
T TIGR01734       219 NNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPK---ATIYNTYGPTE  295 (502)
T ss_pred             cCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCC---cEEEeCccCCc
Confidence                                                      011278899999999999998753   45679999999


Q ss_pred             CCCC---------CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCC
Q psy5016         322 KMFK---------DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDS  389 (485)
Q Consensus       322 t~~~---------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~  389 (485)
                      ++..         ........++|+|+|+++++| |+ +..+++|+.|||+++|+   +++.||+ +++.+...|...+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~~~~  372 (502)
T TIGR01734       296 ATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGP---SVSKGYLNNPEKTAEAFFSHEG  372 (502)
T ss_pred             ceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEccc---cccccccCCcccchHhheeCCC
Confidence            6421         112234457999999999999 55 67789999999999999   9999999 77777766522223


Q ss_pred             CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEe-CCCCCcEEEEEEEEcCCCC
Q psy5016         390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP-DERMGEEVGISIKLKENAK  468 (485)
Q Consensus       390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~-~~~~g~~~~a~vv~~~~~~  468 (485)
                      .+ ||+|||+|++|++ ++++.||.+|+|+++|++|+|.+||++|.++|.|.+++++++. ....++.++++|++++...
T Consensus       373 ~~-~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~  450 (502)
T TIGR01734       373 QP-AYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDF  450 (502)
T ss_pred             cE-EEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccccc
Confidence            35 9999999999977 9999999999999999999999999999999999999999986 4456788999999876432


Q ss_pred             CC----HHHHHHHHHhhCCCC
Q psy5016         469 LN----ADDIRTFCKGKVSKF  485 (485)
Q Consensus       469 ~~----~~~l~~~l~~~l~~y  485 (485)
                      ..    ..+++++++++|++|
T Consensus       451 ~~~~~~~~~i~~~~~~~l~~~  471 (502)
T TIGR01734       451 EKEFQLTKAIKKELKKSLPAY  471 (502)
T ss_pred             ccchhhHHHHHHHHhhhChhh
Confidence            22    267888998888764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=5.1e-30  Score=273.67  Aligned_cols=188  Identities=22%  Similarity=0.266  Sum_probs=158.7

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC----C-ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK----D-VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~----~-~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|+++++++.+.+.+.++    ..+++.||+||++..    . ......+++|+|+++ .++| |+ +..+++|+.|||
T Consensus       277 ~~g~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel  351 (501)
T PRK13390        277 HAAAPCPVDVKHAMIDWLG----PIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTV  351 (501)
T ss_pred             EcCCCCCHHHHHHHHHhcC----CceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCceEE
Confidence            6888999999998888776    346799999997521    1 112346789999999 6888 54 667899999999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  439 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~  439 (485)
                      +++++   +++.||+ +++.+.+.+. ...++ |++|||++++|++|++++.||.||+||++|.+|+|.|||++|.+||.
T Consensus       352 ~v~~~---~~~~gy~~~~~~t~~~~~-~~~~~-w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~  426 (501)
T PRK13390        352 YFERD---RLPFRYLNDPEKTAAAQH-PAHPF-WTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPA  426 (501)
T ss_pred             EEecC---CccccccCChhhhHHhhc-cCCCc-eEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCC
Confidence            99999   9999999 8888877651 11256 99999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HHHHHHHHHhhCCCC
Q psy5016         440 VLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF  485 (485)
Q Consensus       440 V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~y  485 (485)
                      |.+++|++++++..++.+++++++.++...+   .++|.++++++|+.|
T Consensus       427 v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~  475 (501)
T PRK13390        427 VHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHY  475 (501)
T ss_pred             eeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccC
Confidence            9999999999998899999999987654333   358999999998876

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=8.3e-30  Score=275.80  Aligned_cols=186  Identities=24%  Similarity=0.304  Sum_probs=160.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      .||+++++.+.+.+.+.++    ..+++.||+||++...     .....++++|+|+++++++| |+ +..+++|+.|||
T Consensus       334 ~gg~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel  409 (557)
T PRK07059        334 GGGMAVQRPVAERWLEMTG----CPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEI  409 (557)
T ss_pred             eccccCCHHHHHHHHHHhC----CCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCceEE
Confidence            6778888888888888776    4567999999975311     11234679999999999999 54 677999999999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  439 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~  439 (485)
                      +++|+   +++.||+ +++.+.+.+   ..+| ||+|||+++++++|++++.||.+|+|+++|.+|+|.+||++|.+||+
T Consensus       410 ~v~g~---~~~~gY~~~~~~~~~~~---~~~g-~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~  482 (557)
T PRK07059        410 CIRGP---QVMAGYWNRPDETAKVM---TADG-FFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPG  482 (557)
T ss_pred             EEeCC---ccchhhhcCHHHHhhhc---ccCC-ceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCc
Confidence            99999   9999999 777777766   4678 99999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         440 VLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       440 V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      |.+++|++.++...++.++++++.++ ...+.++++++|+++|++|
T Consensus       483 V~~~~v~~~~~~~~ge~~~~~v~~~~-~~~~~~~l~~~~~~~l~~~  527 (557)
T PRK07059        483 VLEVAAVGVPDEHSGEAVKLFVVKKD-PALTEEDVKAFCKERLTNY  527 (557)
T ss_pred             eeEEEEEecccCCCCeeEEEEEEeCC-CCCCHHHHHHHHHHhcccc
Confidence            99999999999888999999988764 3467789999999998865

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.97  E-value=5.1e-30  Score=277.50  Aligned_cols=248  Identities=19%  Similarity=0.192  Sum_probs=193.9

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccC----CCccccc--chhhccchhhhHh---------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSD----IDWEYAD--KCEKSMQGWAKTL---------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~----~~~~~~~--~~~pl~~~~~~~~---------------  284 (485)
                      .+.-+.++|||||||.||.++++|.....+.......+.    +......  ...|++|.++...               
T Consensus       207 ~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  286 (560)
T PRK08751        207 PDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLI  286 (560)
T ss_pred             cccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEe
Confidence            345566799999999999999999887665544332222    1101111  1124455444210               


Q ss_pred             ----------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccc
Q psy5016         285 ----------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYE  318 (485)
Q Consensus       285 ----------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG  318 (485)
                                                                    ..++||+++++.+.+.+.+.++    ..+++.||
T Consensus       287 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~----~~~~~~YG  362 (560)
T PRK08751        287 SNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTG----LTLVEAYG  362 (560)
T ss_pred             cCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHhC----CeEEEeec
Confidence                                                          0126788899999988888776    34679999


Q ss_pred             cCCCCCCCc-----cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCC
Q psy5016         319 FQEKMFKDV-----KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSA  390 (485)
Q Consensus       319 ~TEt~~~~~-----~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~  390 (485)
                      +||++....     .....+++|+|++++.++| |+ +..++.|+.|||+++|+   +++.||+ +++.+.+.|   +.+
T Consensus       363 ~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~  436 (560)
T PRK08751        363 LTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGP---QVMKGYWKRPEETAKVM---DAD  436 (560)
T ss_pred             cccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecC---ccchhhcCChhhhhhcc---ccC
Confidence            999743211     1234578999999999999 54 66789999999999999   9999999 788877766   467


Q ss_pred             CCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC
Q psy5016         391 GRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN  470 (485)
Q Consensus       391 g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~  470 (485)
                      | ||+|||++++|++|++++.||.+|+||++|.+|+|.|||++|..||+|.+++|+++++...++.++++++.+ +...+
T Consensus       437 g-~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~~  514 (560)
T PRK08751        437 G-WLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALT  514 (560)
T ss_pred             C-CccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCCCC
Confidence            8 999999999999999999999999999999999999999999999999999999999988888888887764 44567


Q ss_pred             HHHHHHHHHhhCCCC
Q psy5016         471 ADDIRTFCKGKVSKF  485 (485)
Q Consensus       471 ~~~l~~~l~~~l~~y  485 (485)
                      .++++++++++|++|
T Consensus       515 ~~~l~~~~~~~l~~~  529 (560)
T PRK08751        515 AEDVKAHARANLTGY  529 (560)
T ss_pred             HHHHHHHHHHhhhhc
Confidence            889999999998875

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.97  E-value=5.7e-30  Score=276.32  Aligned_cols=185  Identities=21%  Similarity=0.270  Sum_probs=146.0

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCc---------cCccccCcccccCCcEEEE-cCCCC------
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV---------KNYLITPALKGLYHFKKWM-NPKFS------  351 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~---------~~~~~~s~G~p~pg~~v~I-d~~~~------  351 (485)
                      ++|++++....+ +.+.++    ..+++.||+||++....         ....++++|+|++|++++| |++..      
T Consensus       293 ~gG~~~~~~~~~-~~~~~g----~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~  367 (540)
T PRK05857        293 YGGSRAIAADVR-FIEATG----VRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPG  367 (540)
T ss_pred             EcCccCCchhHH-HHHHhC----CeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccc
Confidence            678887776664 344554    44679999999753110         1224679999999999999 65322      


Q ss_pred             -CCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHH
Q psy5016         352 -TTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE  429 (485)
Q Consensus       352 -~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~e  429 (485)
                       ++.|++|||+|+|+   +++.||| +++.+.+.|    .+| ||+|||+|++|++|++++.||.+|+||++|.+|+|.|
T Consensus       368 ~~~~~~~Gel~v~g~---~~~~GY~~~~~~t~~~~----~~g-~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~e  439 (540)
T PRK05857        368 AGPSASFGTLWIKSP---ANMLGYWNNPERTAEVL----IDG-WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDE  439 (540)
T ss_pred             cCCCCCcceEEEeCc---chhhhhhCCccchhhhc----CCC-ceeccceEEEcCCceEEEeccccccEecCCEEECHHH
Confidence             24588999999999   9999999 888888877    578 9999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC-CHHHH----HHHHHhhCCCC
Q psy5016         430 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL-NADDI----RTFCKGKVSKF  485 (485)
Q Consensus       430 IE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~-~~~~l----~~~l~~~l~~y  485 (485)
                      ||++|..||+|.+++|+++++...++.++++++..+.... ..+++    .+++++++++|
T Consensus       440 IE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~  500 (540)
T PRK05857        440 VDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPM  500 (540)
T ss_pred             HHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccc
Confidence            9999999999999999999998888888888887653221 12334    44555656654

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=6.3e-30  Score=275.91  Aligned_cols=248  Identities=18%  Similarity=0.178  Sum_probs=198.0

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh--hccchhhhH---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE--KSMQGWAKT---------------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~--pl~~~~~~~---------------------  283 (485)
                      ...+.++|||||||.||.+++++...............+.......+.  |++|.++..                     
T Consensus       174 ~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~  253 (542)
T PRK07786        174 DSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFD  253 (542)
T ss_pred             CCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcC
Confidence            345667999999999999999998776665554444444211211111  555543221                     


Q ss_pred             ----------------------h-----------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         284 ----------------------L-----------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       284 ----------------------~-----------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                            +                 ..++||+++++++++.+.+.|+.   ..+++.||+||++.
T Consensus       254 ~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~  330 (542)
T PRK07786        254 PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPE---AQILAAFGQTEMSP  330 (542)
T ss_pred             HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccCcceEEEEECCCCCCHHHHHHHHHHcCC---CeEEeeeccccccc
Confidence                                  0                 01268999999999999998853   45679999999753


Q ss_pred             CC------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         325 KD------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       325 ~~------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      ..      .....++++|+|++++.++| |+ +..++.|+.|||+++|+   .+++||+ +++.+...|    .+| ||+
T Consensus       331 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~f----~~~-~~~  402 (542)
T PRK07786        331 VTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAP---TLMSGYWNNPEATAEAF----AGG-WFH  402 (542)
T ss_pred             ceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEECh---hhhhhhcCCHHHHHHHh----hCC-ccc
Confidence            11      11235678999999999999 54 66689999999999999   9999999 888888777    577 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC-CCCHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KLNADDI  474 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~-~~~~~~l  474 (485)
                      |||+++++++|++++.||.+|+||++|.+|+|.|||++|.+||.|.+++|++.+++..++.++++++++++. ....+++
T Consensus       403 TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  482 (542)
T PRK07786        403 SGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDL  482 (542)
T ss_pred             ccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999888889999999987653 3567899


Q ss_pred             HHHHHhhCCCC
Q psy5016         475 RTFCKGKVSKF  485 (485)
Q Consensus       475 ~~~l~~~l~~y  485 (485)
                      .++|++++++|
T Consensus       483 ~~~l~~~l~~~  493 (542)
T PRK07786        483 AEFLTDRLARY  493 (542)
T ss_pred             HHHHHhhccCC
Confidence            99999999875

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=9.9e-30  Score=274.29  Aligned_cols=184  Identities=20%  Similarity=0.187  Sum_probs=155.4

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCcc---------------CccccCcccccCCcEEEE-cC-CC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVK---------------NYLITPALKGLYHFKKWM-NP-KF  350 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~---------------~~~~~s~G~p~pg~~v~I-d~-~~  350 (485)
                      ++|+++++++++++.+.++    ..+++.||+||++.....               .....++|+|+|+++++| |+ +.
T Consensus       300 ~~G~~l~~~~~~~~~~~~~----~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~  375 (539)
T PRK07008        300 IGGSACPPAMIRTFEDEYG----VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGR  375 (539)
T ss_pred             EcCCCCCHHHHHHHHHHhC----CceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCC
Confidence            6899999999999988886    456899999997521100               012468999999999999 65 44


Q ss_pred             CCCCC--CceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChH
Q psy5016         351 STTTR--KVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPK  428 (485)
Q Consensus       351 ~~~~g--~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~  428 (485)
                      .++.+  ++|||+++|+   +++.||++.+  ...+    .+| ||+|||++++|+||++++.||++|+||++|.+|+|.
T Consensus       376 ~~~~~~~~~Gei~v~g~---~~~~gy~~~~--~~~~----~~g-~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~  445 (539)
T PRK07008        376 ELPWDGKAFGDLQVRGP---WVIDRYFRGD--ASPL----VDG-WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSI  445 (539)
T ss_pred             ccCCCCCcceEEEEeCC---ccchhhcCCh--hhhh----cCC-CcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHH
Confidence            56543  5799999999   9999999433  2233    367 999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       429 eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      |||++|.+||.|.+++|+++++...++.++++|+.+++...+.++++++|+++|++|
T Consensus       446 eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  502 (539)
T PRK07008        446 DIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKW  502 (539)
T ss_pred             HHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccc
Confidence            999999999999999999999988889999999988777778899999999999876

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=3.7e-30  Score=286.04  Aligned_cols=162  Identities=11%  Similarity=0.027  Sum_probs=133.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----CCccCccccCcccccCCcEEEE-cCCC---CCCCCCceE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----KDVKNYLITPALKGLYHFKKWM-NPKF---STTTRKVAL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~~~~~~~~~s~G~p~pg~~v~I-d~~~---~~~~g~~Ge  359 (485)
                      +||+++++++.+++...++     .++++||+||++.    ........+++|+|+|+++++| |+..   ..+++..||
T Consensus       435 ~GGa~l~~~~~~~~~~~~~-----~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GE  509 (700)
T PTZ00216        435 SGGGPLSAATQEFVNVVFG-----MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGE  509 (700)
T ss_pred             ECCCCCCHHHHHHHHHHhh-----hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCce
Confidence            6788888888776665543     3579999999742    2223345789999999999999 6532   245677899


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEE-ECcEeeChHHHHHHHHcC
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~-~~G~~v~p~eIE~~l~~~  437 (485)
                      |+|+|+   +++.||| +++.|++.|   +.+| ||+|||+|++|+||+|+|+||+||+|| ++|++|+|.|||++|.+|
T Consensus       510 L~vrG~---~v~~GY~~~pe~T~~~f---~~dG-w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~  582 (700)
T PTZ00216        510 ILLRGP---FLFKGYYKQEELTREVL---DEDG-WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQN  582 (700)
T ss_pred             EEEcCC---cccchhcCChhHhhhhc---cccC-CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcC
Confidence            999999   9999999 899999988   5788 999999999999999999999999999 899999999999999999


Q ss_pred             CCccE--EEEEEEeCCCCCcEEEEEEEEc
Q psy5016         438 PNVLE--AYAYGVPDERMGEEVGISIKLK  464 (485)
Q Consensus       438 ~~V~e--a~vv~~~~~~~g~~~~a~vv~~  464 (485)
                      |.|.+  ++|++.++   ...++|+|+++
T Consensus       583 p~V~~~~~~v~~~~~---~~~l~a~vv~~  608 (700)
T PTZ00216        583 ELVVPNGVCVLVHPA---RSYICALVLTD  608 (700)
T ss_pred             cCcccceEEEEEecC---CceEEEEEecC
Confidence            99997  34554433   24688888875

>PRK12316 peptide synthase; Provisional

Probab=99.97  E-value=5.8e-30  Score=330.87  Aligned_cols=251  Identities=14%  Similarity=0.024  Sum_probs=203.8

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ...+.+.++|||||||.||+++++|++.........+.++++..+..... |++|.++..                    
T Consensus       653 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~  732 (5163)
T PRK12316        653 NPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDH  732 (5163)
T ss_pred             CCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCcccc
Confidence            34556778999999999999999999988888777777776633222222 555544332                    


Q ss_pred             ------------------------h----------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         284 ------------------------L----------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       284 ------------------------~----------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                              +                ..++||+++++++.+.+.+.++.   ..+++.||+||++
T Consensus       733 ~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~  809 (5163)
T PRK12316        733 RDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVASCTSLRRIVCSGEALPADAQEQVFAKLPQ---AGLYNLYGPTEAA  809 (5163)
T ss_pred             CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccccccCCCccEEEEeeccCCHHHHHHHHHhCCC---CeEEeCcCcChhe
Confidence                                    0                01289999999999999877653   4568999999975


Q ss_pred             C------CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc--CCCCC
Q psy5016         324 F------KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP--DSAGR  392 (485)
Q Consensus       324 ~------~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~--~~~g~  392 (485)
                      .      .........++|+|++|++++| |+ +..+|.|++|||+|+|+   ++++||+ +++.|++.|...  ..+++
T Consensus       810 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~---~v~~GYl~~~~~t~~~f~~~~~~~~~~  886 (5163)
T PRK12316        810 IDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGR---GLARGYHGRPGLTAERFVPSPFVAGER  886 (5163)
T ss_pred             eeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEeccc---ccChhhCCChhhhhhhCCCCCCCCCCe
Confidence            2      1122334568999999999999 65 66799999999999999   9999999 899898877321  12334


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD  472 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  472 (485)
                      ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+    ++.++|||++.++.....+
T Consensus       887 ~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~~~  962 (5163)
T PRK12316        887 MYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWRE  962 (5163)
T ss_pred             eEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999986    6789999999877667789


Q ss_pred             HHHHHHHhhCCCC
Q psy5016         473 DIRTFCKGKVSKF  485 (485)
Q Consensus       473 ~l~~~l~~~l~~y  485 (485)
                      +|+++|+++|++|
T Consensus       963 ~l~~~l~~~Lp~y  975 (5163)
T PRK12316        963 ALKAHLAASLPEY  975 (5163)
T ss_pred             HHHHHHHhhCCCc
Confidence            9999999999987

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.4e-29  Score=270.94  Aligned_cols=246  Identities=13%  Similarity=-0.042  Sum_probs=187.9

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--hhc---------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS--SEY---------------  288 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~--~l~---------------  288 (485)
                      ...+.+++||||||.||.+++++.............+++...+...+. |++|.++....  .+.               
T Consensus       181 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~  260 (540)
T PRK06164        181 DAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAAR  260 (540)
T ss_pred             CceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHH
Confidence            444556889999999999999999988777766666666533322222 77776654310  011               


Q ss_pred             -----------------------------------------c-CCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC
Q psy5016         289 -----------------------------------------N-SYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD  326 (485)
Q Consensus       289 -----------------------------------------~-g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~  326 (485)
                                                               + +.+.+..+.+++.+.    + ..+++.||+||++...
T Consensus       261 ~~~~l~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~YG~tE~~~~~  335 (540)
T PRK06164        261 TARALRRHRVTHTFGNDEMLRRILDTAGERADFPSARLFGFASFAPALGELAALARAR----G-VPLTGLYGSSEVQALV  335 (540)
T ss_pred             HHHHHHHhCCeeecCCHHHHHHHHHhhcccCCCcceeeeeeccCCcchHHHHHHHhhc----C-Cceecceeecccccee
Confidence                                                     1 122222333333322    1 3467999999974311


Q ss_pred             -------ccCccccCccccc-CCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeE
Q psy5016         327 -------VKNYLITPALKGL-YHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSI  394 (485)
Q Consensus       327 -------~~~~~~~s~G~p~-pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~  394 (485)
                             .......+.|.|+ +++.++| |+  +..++.|+.|||+++|+   +++.||| +++.+.+.|   ..+| ||
T Consensus       336 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~---~~~~-~~  408 (540)
T PRK06164        336 ALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAP---SLMRGYLDNPDATARAL---TDDG-YF  408 (540)
T ss_pred             eccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecc---cccccccCCchhhhhcc---cCCC-ce
Confidence                   1122334678876 8999999 64  56689999999999999   9999999 888888877   5678 99


Q ss_pred             ecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHH
Q psy5016         395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDI  474 (485)
Q Consensus       395 ~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l  474 (485)
                      +|||+|++|++|++++.||.+|+||++|++|+|.|||++|.+||+|.+++|+++++ ..++.++++++++++...+.+++
T Consensus       409 ~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~~~~~~~~l  487 (540)
T PRK06164        409 RTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDGASPDEAGL  487 (540)
T ss_pred             ecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999984 35678999999987777788999


Q ss_pred             HHHHHhhCCCC
Q psy5016         475 RTFCKGKVSKF  485 (485)
Q Consensus       475 ~~~l~~~l~~y  485 (485)
                      .++|+++|++|
T Consensus       488 ~~~~~~~l~~~  498 (540)
T PRK06164        488 MAACREALAGF  498 (540)
T ss_pred             HHHHHhhcccC
Confidence            99999999876

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=3.6e-29  Score=256.04  Aligned_cols=168  Identities=18%  Similarity=0.221  Sum_probs=144.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMD  366 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~  366 (485)
                      ++|+++++++.+++.+ ++    ..+++.||+||++..      ....|+|+++++++| |          |||+++|+ 
T Consensus       158 ~gG~~l~~~~~~~~~~-~~----~~v~~~YG~TE~~~~------~~~~G~~~~g~~v~i~~----------Gei~v~g~-  215 (358)
T PRK07824        158 VGGGPAPAPVLDAAAA-AG----INVVRTYGMSETSGG------CVYDGVPLDGVRVRVED----------GRIALGGP-  215 (358)
T ss_pred             ECCCCCCHHHHHHHHh-cC----CcEEecccCCccCCC------cCcCceeCCCCEEEecC----------CEEEEecC-
Confidence            7888999988887765 33    446799999997532      134699999999999 5          89999999 


Q ss_pred             CCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEE
Q psy5016         367 SEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY  446 (485)
Q Consensus       367 ~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv  446 (485)
                        .++.||++.... ..+   ..+| ||+|||++++ ++|+++++||.||+||++|++|+|.|||++|.+||+|.+++|+
T Consensus       216 --~~~~gY~~~~~~-~~~---~~~g-~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv  287 (358)
T PRK07824        216 --TLAKGYRNPVDP-DPF---AEPG-WFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVF  287 (358)
T ss_pred             --ccccccCCCccc-ccc---cCCC-ceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence              999999943322 223   3577 9999999999 8999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         447 GVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       447 ~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      +.+++..|+.++++++.+++.....++|+++++++|++|
T Consensus       288 ~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~  326 (358)
T PRK07824        288 GLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRT  326 (358)
T ss_pred             ecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccc
Confidence            999988899999999888766778899999999999876

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.97  E-value=2.1e-30  Score=284.02  Aligned_cols=242  Identities=12%  Similarity=-0.035  Sum_probs=179.9

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCc-c-cccch-hhccchhhhH-------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDW-E-YADKC-EKSMQGWAKT-------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~-~-~~~~~-~pl~~~~~~~-------------------  283 (485)
                      .+.-+.++|||||||.||.++++|.+...+.......+.... . +..++ .|++|.++..                   
T Consensus       208 ~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~  287 (614)
T PRK08180        208 PDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGK  287 (614)
T ss_pred             cCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCC
Confidence            345567899999999999999999988766655444333321 1 11111 2566644321                   


Q ss_pred             ------------------------------h-------------------hhhccCCCCCHHHHHHHHhhhhh-cc-cCc
Q psy5016         284 ------------------------------L-------------------SSEYNSYAGPVTLRRNLIDPLEI-VQ-NRI  312 (485)
Q Consensus       284 ------------------------------~-------------------~~l~~g~~~~~~l~~~~~~~~~~-~~-~~~  312 (485)
                                                    +                   ..++||+++++++.+++.+.+.. ++ ...
T Consensus       288 ~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~  367 (614)
T PRK08180        288 PTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIR  367 (614)
T ss_pred             ccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCce
Confidence                                          0                   00277888999998888875321 11 134


Q ss_pred             cccccccCCCCC----CCccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016         313 DDVEYEFQEKMF----KDVKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV  386 (485)
Q Consensus       313 i~~~YG~TEt~~----~~~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~  386 (485)
                      +++.||+||++.    .......++++|+|+||++++| |+      +..|||+++|+   +++.||| +++.+++.|  
T Consensus       368 l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~------~~~GEi~vrg~---~v~~GY~~~p~~t~~~~--  436 (614)
T PRK08180        368 MMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV------GGKLEVRVKGP---NVTPGYWRAPELTAEAF--  436 (614)
T ss_pred             eeeeecccccCCceEecccccCCCCcccCccCCcEEEEecC------CCCcEEEEecC---ccchhhcCChhHhHhhc--
Confidence            579999999752    1122346789999999999999 65      34599999999   9999999 888888877  


Q ss_pred             cCCCCCeEecCceEEE----ecCCeEEEEecCCCeEE-ECcEeeC--hHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEE
Q psy5016         387 PDSAGRSIFEKDQFVL----REDGYGQVVGRIKDMII-RGGENIY--PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  459 (485)
Q Consensus       387 ~~~~g~~~~TGD~~~~----d~~G~l~i~GR~~d~I~-~~G~~v~--p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a  459 (485)
                       +.+| ||+|||+|++    |++|+++|+||+||+|+ .+|++|+  |.|||.++.+||.|.+++|++.+++    .+.|
T Consensus       437 -~~dg-w~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a  510 (614)
T PRK08180        437 -DEEG-YYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGL  510 (614)
T ss_pred             -ccCC-ceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEE
Confidence             5678 9999999999    56899999999999888 5798776  7899999999999999999999875    4778


Q ss_pred             EEEEcCCC---------------CCCHHHHHHHHHhhCCC
Q psy5016         460 SIKLKENA---------------KLNADDIRTFCKGKVSK  484 (485)
Q Consensus       460 ~vv~~~~~---------------~~~~~~l~~~l~~~l~~  484 (485)
                      +|+++++.               ..+.++|+++|++.|+.
T Consensus       511 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  550 (614)
T PRK08180        511 LVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLAR  550 (614)
T ss_pred             EEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHH
Confidence            88887542               12446788888877654

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.97  E-value=1.3e-29  Score=273.55  Aligned_cols=247  Identities=20%  Similarity=0.234  Sum_probs=193.2

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL---------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~---------------------  284 (485)
                      ...+.++|||||||.||.++++|.+.......+.....++..+...+. |++|.++...                     
T Consensus       187 ~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~  266 (547)
T PRK06087        187 DELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPD  266 (547)
T ss_pred             CCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHH
Confidence            445667999999999999999998876665555444444422222222 5555443210                     


Q ss_pred             ---------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         285 ---------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       285 ---------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                                             ..++||+++++++.+.+.+. +    ..+++.||+||++..
T Consensus       267 ~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~----~~l~~~YG~TE~~~~  341 (547)
T PRK06087        267 ACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR-G----IKLLSVYGSTESSPH  341 (547)
T ss_pred             HHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc-C----CcEEEEecccccCCc
Confidence                                                   01178999999988876653 3    456799999997532


Q ss_pred             Cc------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016         326 DV------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE  396 (485)
Q Consensus       326 ~~------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T  396 (485)
                      ..      .....+++|+|++++.++| |+ +..++.|+.|||+++|+   +++.||+ +++.+...+   +.+| ||+|
T Consensus       342 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~---~~~g-~~~T  414 (547)
T PRK06087        342 AVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGP---NVFMGYLDEPELTARAL---DEEG-WYYS  414 (547)
T ss_pred             cccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEecc---cccccccCCHHHHHHHh---CCCC-CcCc
Confidence            11      1223467899999999999 65 66789999999999999   9999999 777777666   4577 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC-CCCCCHHHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE-NAKLNADDIR  475 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~~l~  475 (485)
                      ||++++|++|++++.||.+|+|+++|.+|+|.+||++|.++|+|.+++|++.+++..|+.+++++++++ +...+.+++.
T Consensus       415 GDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~  494 (547)
T PRK06087        415 GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVV  494 (547)
T ss_pred             CceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888999999999876 3455678888


Q ss_pred             HHHH-hhCCCC
Q psy5016         476 TFCK-GKVSKF  485 (485)
Q Consensus       476 ~~l~-~~l~~y  485 (485)
                      ++++ +++++|
T Consensus       495 ~~~~~~~l~~~  505 (547)
T PRK06087        495 AFFSRKRVAKY  505 (547)
T ss_pred             HHHHhcccccc
Confidence            8875 466654

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.97  E-value=3.5e-29  Score=267.73  Aligned_cols=247  Identities=15%  Similarity=0.086  Sum_probs=193.7

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHh-hhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAH-YNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~-~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ..-+.++|||||||.||.+++++.+....... .....++...+..... |++|.++..                     
T Consensus       161 ~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~  240 (508)
T TIGR02262       161 DDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPT  240 (508)
T ss_pred             CCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCC
Confidence            45567799999999999999999887665543 2222233211111111 333322110                     


Q ss_pred             ---------------------------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         284 ---------------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       284 ---------------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                             + ..+++|+++++++.+.|.+.|+    ..+++.||+||++
T Consensus       241 ~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~----~~v~~~YG~tE~~  316 (508)
T TIGR02262       241 PDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFG----VDIVDGIGSTEML  316 (508)
T ss_pred             HHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhC----CchhhCccccccC
Confidence                                                   0 0137899999999999998886    4568999999975


Q ss_pred             C----CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016         324 F----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE  396 (485)
Q Consensus       324 ~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T  396 (485)
                      .    ........+++|+|++++.++| |+ +..+++|++|||+++|+   +++.||+ +++.+...|    .++ ||+|
T Consensus       317 ~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~---~~~~gY~~~~~~~~~~~----~~~-~~~T  388 (508)
T TIGR02262       317 HIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGP---SSATMYWNNRAKTRDTF----QGE-WTRS  388 (508)
T ss_pred             ceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecC---ccccccCCCHHHhHhhh----hcC-ceec
Confidence            3    1122345678999999999999 54 66789999999999999   9999999 788777766    567 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC---CCHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADD  473 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~---~~~~~  473 (485)
                      ||+++++++|++++.||.+|+|+++|.+|+|.+||++|.+|++|.++++++.++...++.+.+|+++.++..   ...++
T Consensus       389 GD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  468 (508)
T TIGR02262       389 GDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETE  468 (508)
T ss_pred             cceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHH
Confidence            999999999999999999999999999999999999999999999999999988877888999998876542   34678


Q ss_pred             HHHHHHhhCCCC
Q psy5016         474 IRTFCKGKVSKF  485 (485)
Q Consensus       474 l~~~l~~~l~~y  485 (485)
                      +.++++++|++|
T Consensus       469 i~~~~~~~l~~~  480 (508)
T TIGR02262       469 LKEHVKDRLAPY  480 (508)
T ss_pred             HHHHHHHhcccC
Confidence            999999998865

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.2e-29  Score=273.73  Aligned_cols=190  Identities=18%  Similarity=0.156  Sum_probs=156.4

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC----cc--------CccccCcccccCCcEEEE-cCCCCC--
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD----VK--------NYLITPALKGLYHFKKWM-NPKFST--  352 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~----~~--------~~~~~s~G~p~pg~~v~I-d~~~~~--  352 (485)
                      ++|+++++.+.+.+.+.++    ..+++.||+||++...    ..        .....++|++.++++++| |++..+  
T Consensus       305 ~gG~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~g~~~~~  380 (576)
T PRK05620        305 VGGSAVPPILIKAWEERYG----VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMES  380 (576)
T ss_pred             EcCCCCCHHHHHHHHHHhC----CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecCCccccC
Confidence            6788899999988888776    4467999999975311    00        012347899999999999 765544  


Q ss_pred             CCCCceEEEEecCCCCccccccc-Ccccc----ccccc---------ccCCCCCeEecCceEEEecCCeEEEEecCCCeE
Q psy5016         353 TTRKVALTWPNSMDSEARIYHYK-KYLRE----EENIT---------VPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMI  418 (485)
Q Consensus       353 ~~g~~Gel~v~g~~~~~~~~gY~-~~~~~----~~~~~---------~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I  418 (485)
                      +.+..|||+++|+   .++.||| +++.+    ...|.         .+..+| ||+|||++++|+||++++.||.+|+|
T Consensus       381 ~~~~~Gel~v~g~---~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g-~~~TGD~~~~~~dg~l~~~GR~~d~i  456 (576)
T PRK05620        381 TDRNEGEIQVRGN---WVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADG-WLRTGDVGSVTRDGFLTIHDRARDVI  456 (576)
T ss_pred             CCCCceEEEEEcC---cccccccCCccccccccccccccccchhhhcccccCC-cEecCceEEEcCCceEEEEechhhhh
Confidence            3578899999999   9999999 77766    22221         013467 99999999999999999999999999


Q ss_pred             EECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC---CCHHHHHHHHHhhCCCC
Q psy5016         419 IRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVSKF  485 (485)
Q Consensus       419 ~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~y  485 (485)
                      |++|.+|+|.+||++|.+||.|.+++|++.+++..|+.+++++++.++..   .+.++|+++|+++|++|
T Consensus       457 ~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~  526 (576)
T PRK05620        457 RSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNW  526 (576)
T ss_pred             hcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccc
Confidence            99999999999999999999999999999999988999999999887643   34689999999999876

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.97  E-value=7.9e-30  Score=281.50  Aligned_cols=163  Identities=13%  Similarity=0.057  Sum_probs=133.9

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC----Cc-cCccccCcccccCCcEEEE-c-CC---CCCCCCCc
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK----DV-KNYLITPALKGLYHFKKWM-N-PK---FSTTTRKV  357 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~----~~-~~~~~~s~G~p~pg~~v~I-d-~~---~~~~~g~~  357 (485)
                      +||+++++++.+.+ +.++   ...++++||+||++..    .. ....++++|+|+|+++++| | ++   ..++.+..
T Consensus       390 ~gga~l~~~~~~~~-~~~~---~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~  465 (660)
T PLN02430        390 SGGAPLSTEIEEFL-RVTS---CAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPR  465 (660)
T ss_pred             ECCCCCCHHHHHHH-HHhc---CCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCc
Confidence            67888998875544 4433   1446799999997421    11 1234789999999999999 5 22   23455668


Q ss_pred             eEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEE-CcEeeChHHHHHHHH
Q psy5016         358 ALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQ  435 (485)
Q Consensus       358 Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~-~G~~v~p~eIE~~l~  435 (485)
                      |||+|+|+   +++.||| +++.|++.|    .+| ||+|||+|++|+||+|+|+||+||+||. +|++|+|.+||++|.
T Consensus       466 GEi~vrg~---~v~~GY~~~~e~t~~~~----~dG-w~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~  537 (660)
T PLN02430        466 GEICVRGK---CLFSGYYKNPELTEEVM----KDG-WFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYG  537 (660)
T ss_pred             ceEEecCC---CccccccCChHHhhhhh----hcc-ceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHh
Confidence            99999999   9999999 899998888    588 9999999999999999999999999995 799999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                      +||.|.+++|++..   .++.++|+|++++
T Consensus       538 ~~p~V~~~~V~G~~---~~~~~~A~vv~~~  564 (660)
T PLN02430        538 QNPIVEDIWVYGDS---FKSMLVAVVVPNE  564 (660)
T ss_pred             cCCCeeEEEEEecC---CcceEEEEEEcCH
Confidence            99999999999942   3568999999864

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.97  E-value=2e-29  Score=275.40  Aligned_cols=253  Identities=14%  Similarity=0.055  Sum_probs=191.9

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      ....+.++|||||||.||.++++|.+.......+.+...++..+...+. |++|.++...                    
T Consensus       198 ~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~  277 (600)
T PRK08279        198 AKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSA  277 (600)
T ss_pred             ccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCH
Confidence            3566778999999999999999999988887776666666633332222 7777665430                    


Q ss_pred             --------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC
Q psy5016         285 --------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD  326 (485)
Q Consensus       285 --------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~  326 (485)
                                                            ...+.|+++++++++++.+.|+.   ..+++.||+||++...
T Consensus       278 ~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~  354 (600)
T PRK08279        278 SRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGI---PRILEFYAASEGNVGF  354 (600)
T ss_pred             HHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEEecCCCCHHHHHHHHHHhCc---ceeeeeecccccceee
Confidence                                                  00145677888888888888873   4468999999975311


Q ss_pred             -ccCccccCcccccC----CcEE---------EE-cC-C--CCCCCCCceEEE--EecCCCCcccccccCcccccccccc
Q psy5016         327 -VKNYLITPALKGLY----HFKK---------WM-NP-K--FSTTTRKVALTW--PNSMDSEARIYHYKKYLREEENITV  386 (485)
Q Consensus       327 -~~~~~~~s~G~p~p----g~~v---------~I-d~-~--~~~~~g~~Gel~--v~g~~~~~~~~gY~~~~~~~~~~~~  386 (485)
                       ......+++|++.+    ++.+         .| +. +  ..+++|+.|||+  ++++   +++.||.+++.+.+.|..
T Consensus       355 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~---~~~~GY~~~~~t~~~~~~  431 (600)
T PRK08279        355 INVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDR---GPFDGYTDPEASEKKILR  431 (600)
T ss_pred             cccCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCc---ccccccCCchhhHHHHhh
Confidence             11234567887766    3322         22 21 1  236889999998  6788   999999877777665421


Q ss_pred             ---cCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCC-CCcEEEEEEE
Q psy5016         387 ---PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIK  462 (485)
Q Consensus       387 ---~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~-~g~~~~a~vv  462 (485)
                         .+.++ ||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++++++. .++..+++++
T Consensus       432 ~~~~~~~~-~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv  510 (600)
T PRK08279        432 DVFKKGDA-WFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIV  510 (600)
T ss_pred             cccCCCCc-eEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEE
Confidence               12346 999999999999999999999999999999999999999999999999999999998765 3555677777


Q ss_pred             EcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         463 LKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       463 ~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      +.++...+.++++++|+++|++|
T Consensus       511 ~~~~~~~~~~~l~~~l~~~L~~~  533 (600)
T PRK08279        511 LADGAEFDLAALAAHLYERLPAY  533 (600)
T ss_pred             ecCCccCCHHHHHHHHHhhCccc
Confidence            77666778899999999999986

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.97  E-value=2.2e-29  Score=297.48  Aligned_cols=253  Identities=10%  Similarity=0.009  Sum_probs=194.5

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhh----------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAK----------------------  282 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~----------------------  282 (485)
                      ....+.++|||||||.||.++++|.............+.++..+..... |+.|..+.                      
T Consensus       597 ~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~  676 (1296)
T PRK10252        597 PHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHR  676 (1296)
T ss_pred             CCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccC
Confidence            3455778999999999999999999887777665555554422111111 22111110                      


Q ss_pred             ----------------------H-------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         283 ----------------------T-------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       283 ----------------------~-------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                            .                   + ..++||+++++++.+.+.+.++    ..+++.||+|
T Consensus       677 ~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~----~~l~n~YG~T  752 (1296)
T PRK10252        677 DPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTG----APLHNLYGPT  752 (1296)
T ss_pred             CHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCC----CEEEeCCCcc
Confidence                                  0                   0 1128899999999999988765    4568999999


Q ss_pred             CCCCC-----Cc------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016         321 EKMFK-----DV------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV  386 (485)
Q Consensus       321 Et~~~-----~~------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~  386 (485)
                      |++..     ..      ......++|+|+++++++| |+ +..+++|..|||+|+|+   ++++||+ +++.|++.|..
T Consensus       753 E~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~---~~~~GY~~~~~~t~~~f~~  829 (1296)
T PRK10252        753 EAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGI---QLAQGYLGRPDLTASRFIA  829 (1296)
T ss_pred             hhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEeccc---ccchhhCCCcccchhhccc
Confidence            96421     10      1233568999999999999 65 67799999999999999   9999999 88888887732


Q ss_pred             c--CCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEe----CCCCC--cEEE
Q psy5016         387 P--DSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP----DERMG--EEVG  458 (485)
Q Consensus       387 ~--~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~----~~~~g--~~~~  458 (485)
                      .  ..+++||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|+++.    +...+  ..++
T Consensus       830 ~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lv  909 (1296)
T PRK10252        830 DPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLV  909 (1296)
T ss_pred             CCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEE
Confidence            1  12335999999999999999999999999999999999999999999999999999888763    11123  3799


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         459 ISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       459 a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      ++|+..++...+.++|+++++++|++|
T Consensus       910 a~v~~~~~~~~~~~~l~~~l~~~Lp~~  936 (1296)
T PRK10252        910 GYLVSQSGLPLDTSALQAQLRERLPPH  936 (1296)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhhCchh
Confidence            999987766677899999999999876

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.97  E-value=6.9e-29  Score=276.37  Aligned_cols=193  Identities=16%  Similarity=0.043  Sum_probs=149.2

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC-CCCCCCCC--ce
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRK--VA  358 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~--~G  358 (485)
                      ++|++++++...++.+.++.   ..+.+.||+||++..     ......++++|+|++|++++| |+ +.+++.|+  +|
T Consensus       478 s~Ge~l~~~~~~~~~~~~~~---~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~G  554 (728)
T PLN03052        478 STGEASSVDDYLWLMSRAGY---KPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTG  554 (728)
T ss_pred             ecCCCCCHHHHHHHHHhcCC---CCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceE
Confidence            78999999988888877653   345799999996421     112345688999999999999 65 67788885  69


Q ss_pred             EEEEecCCCCcccccccCcccccccccccC--CCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHH-
Q psy5016         359 LTWPNSMDSEARIYHYKKYLREEENITVPD--SAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ-  435 (485)
Q Consensus       359 el~v~g~~~~~~~~gY~~~~~~~~~~~~~~--~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~-  435 (485)
                      ||+++++++ ....+|++.+.....|....  .+.+||+|||++++|+||+++|+||.||+||++|+||+|.|||++|. 
T Consensus       555 EL~v~~~~~-~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~  633 (728)
T PLN03052        555 ELALFPLMF-GASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNA  633 (728)
T ss_pred             EEEEeCCCC-CCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHh
Confidence            999987644 55567775443333331111  12239999999999999999999999999999999999999999995 


Q ss_pred             cCCCccEEEEEEEeCCCCC-cEEEEEEEEc--CCCCCCHHHHHHH----HHhhCCC
Q psy5016         436 THPNVLEAYAYGVPDERMG-EEVGISIKLK--ENAKLNADDIRTF----CKGKVSK  484 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g-~~~~a~vv~~--~~~~~~~~~l~~~----l~~~l~~  484 (485)
                      .||+|.|++||+++++..| +.+++||+++  ++...+.++|+++    ++++|++
T Consensus       634 ~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~  689 (728)
T PLN03052        634 ADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNP  689 (728)
T ss_pred             cCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence            7999999999999998776 8999999998  5555666666665    4555554

>PRK12467 peptide synthase; Provisional

Probab=99.97  E-value=9.9e-30  Score=323.75  Aligned_cols=254  Identities=15%  Similarity=0.051  Sum_probs=202.3

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ..++-+.++|||||||.||+++++|+..........+.+.++..+..... |+.|..+..                    
T Consensus      3235 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~ 3314 (3956)
T PRK12467       3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLW 3314 (3956)
T ss_pred             CCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccC
Confidence            34555778999999999999999999988888777766666522222111 333322111                    


Q ss_pred             -----------------------h----------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         284 -----------------------L----------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       284 -----------------------~----------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                             +                ..++||+++++++.+++.+.++.   ..+++.||+||++.
T Consensus      3315 ~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~---~~l~n~YG~TE~~~ 3391 (3956)
T PRK12467       3315 DPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCASLDIYVFGGEAVPPAAFEQVKRKLKP---RGLTNGYGPTEAVV 3391 (3956)
T ss_pred             CHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccccCCCCceEEEEecCCCCHHHHHHHHHhCCC---CEEEeCcccchhEe
Confidence                                   0                01289999999999999887753   44679999999742


Q ss_pred             C-----Cc----cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc---CC
Q psy5016         325 K-----DV----KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP---DS  389 (485)
Q Consensus       325 ~-----~~----~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~---~~  389 (485)
                      .     ..    ......++|+|+++++++| |+ +.++|+|++|||+|+|+   .+++||+ +++.|++.|...   ..
T Consensus      3392 ~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~---~v~~GY~~~~~~T~~~F~~~p~~~~ 3468 (3956)
T PRK12467       3392 TVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGV---GLARGYHQRPSLTAERFVADPFSGS 3468 (3956)
T ss_pred             eeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcch---hhhhhccCCcccchhhccCCCCCCC
Confidence            1     11    1123468999999999999 65 67799999999999999   9999999 899999988421   12


Q ss_pred             CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC
Q psy5016         390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL  469 (485)
Q Consensus       390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~  469 (485)
                      +++||+|||+|++++||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++..+ ..++.+++||+..+....
T Consensus      3469 g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~ 3547 (3956)
T PRK12467       3469 GGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGD 3547 (3956)
T ss_pred             CceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcc
Confidence            3458999999999999999999999999999999999999999999999999999999854 467899999998765556


Q ss_pred             CHHHHHHHHHhhCCCC
Q psy5016         470 NADDIRTFCKGKVSKF  485 (485)
Q Consensus       470 ~~~~l~~~l~~~l~~y  485 (485)
                      ..++++++|+++|++|
T Consensus      3548 ~~~~l~~~l~~~Lp~y 3563 (3956)
T PRK12467       3548 WRETLRDHLAASLPDY 3563 (3956)
T ss_pred             cHHHHHHHHhccCChh
Confidence            7789999999999987

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.96  E-value=5.2e-29  Score=268.63  Aligned_cols=186  Identities=24%  Similarity=0.238  Sum_probs=160.7

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-----ccCccccCcccccCCcEEEE---cC-CCCCCCCCce
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-----VKNYLITPALKGLYHFKKWM---NP-KFSTTTRKVA  358 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-----~~~~~~~s~G~p~pg~~v~I---d~-~~~~~~g~~G  358 (485)
                      .||+++++++.+++.+.++    ..+++.||+||++...     .....++++|+|++++.++|   |+ +..++.|+.|
T Consensus       319 ~gg~~~~~~~~~~~~~~~~----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~G  394 (541)
T TIGR03205       319 SGGAPLPVEVANFFERKTG----LKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVG  394 (541)
T ss_pred             EccccCCHHHHHHHHHHhC----CCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCee
Confidence            7889999999998888776    4467999999974311     12234678999999999887   33 5668899999


Q ss_pred             EEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcC
Q psy5016         359 LTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       359 el~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~  437 (485)
                      ||+++|+   +++.||+ +++.+.+.|    .++ ||+|||+++++++|+++++||.+|+||++|++|+|.+||+++.+|
T Consensus       395 el~v~~~---~~~~gy~~~~~~~~~~~----~~~-~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~  466 (541)
T TIGR03205       395 ELRIRGP---NVTRGYWNRPEESAEAF----VGD-RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEH  466 (541)
T ss_pred             EEEEecC---CccccccCChhhhHhhh----ccC-CcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhC
Confidence            9999999   9999999 777777777    467 999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEEEeCCCCCcEEEEEEEEcCCC-CCCHHHHHHHHHhhCCCC
Q psy5016         438 PNVLEAYAYGVPDERMGEEVGISIKLKENA-KLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~-~~~~~~l~~~l~~~l~~y  485 (485)
                      +.|.+++|++++++..++.++++++++++. ..+.+++.++++++|++|
T Consensus       467 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~  515 (541)
T TIGR03205       467 PGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKH  515 (541)
T ss_pred             CCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccc
Confidence            999999999999988889999999988754 357789999999999876

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.96  E-value=1.1e-28  Score=264.02  Aligned_cols=186  Identities=23%  Similarity=0.276  Sum_probs=160.4

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|+++++++++++.+.++    ..+++.||+||++...     .....++++|+|+++++++| |+ +..++.|++|||
T Consensus       278 ~gg~~~~~~~~~~~~~~~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel  353 (509)
T PRK12406        278 HAAAPCPADVKRAMIEWWG----PVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEI  353 (509)
T ss_pred             EcCCCCCHHHHHHHHHHcC----CcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEE
Confidence            7889999999999998876    4467999999975311     11235678999999999999 65 566899999999


Q ss_pred             EEecCCCCcccc-ccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         361 WPNSMDSEARIY-HYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       361 ~v~g~~~~~~~~-gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      +++++   +++. +|+ +++.++..+    .++ ||+|||++++|++|++++.||.+|+||++|.+|+|.+||++|.++|
T Consensus       354 ~v~~~---~~~~~~y~~~~~~~~~~~----~~~-~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~  425 (509)
T PRK12406        354 YSRIA---GNPDFTYHNKPEKRAEID----RGG-FITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVP  425 (509)
T ss_pred             EEECC---ccccccccCCchhccccc----CCC-CeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCC
Confidence            99999   7765 888 666665544    678 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      +|.++++++.++...++.++++++++++...+.++|+++++++|++|
T Consensus       426 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~  472 (509)
T PRK12406        426 GVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGY  472 (509)
T ss_pred             CeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccC
Confidence            99999999999988889999999988766667899999999998876

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=4.1e-30  Score=252.33  Aligned_cols=228  Identities=23%  Similarity=0.267  Sum_probs=195.3

Q ss_pred             cEEEecccchhhHHHhhhcccCCCcccccchhhccchhhhH-------hhh----hccCCCCCHHHHHHHHhhhhhcccC
Q psy5016         243 MSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGWAKT-------LSS----EYNSYAGPVTLRRNLIDPLEIVQNR  311 (485)
Q Consensus       243 K~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~~~----l~~g~~~~~~l~~~~~~~~~~~~~~  311 (485)
                      ..++++...++.....++++++++  ...+++|+-..|.-.       +++    -.||+.+++.+.+++...++    .
T Consensus       258 G~VVla~~psp~~~F~lIerh~Vt--~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg----C  331 (542)
T COG1021         258 GTVVLAPDPSPELCFPLIERHGVT--VTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLG----C  331 (542)
T ss_pred             cEEEECCCCCHHHHHHHHHHhccc--eEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhC----c
Confidence            568999999999999999999998  445555654444332       122    28999999999999999888    4


Q ss_pred             ccccccccCCCC-----CCCccCccccCccccc-CCcEEEE-c-CCCCCCCCCceEEEEecCCCCccccccc-Ccccccc
Q psy5016         312 IDDVEYEFQEKM-----FKDVKNYLITPALKGL-YHFKKWM-N-PKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEE  382 (485)
Q Consensus       312 ~i~~~YG~TEt~-----~~~~~~~~~~s~G~p~-pg~~v~I-d-~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~  382 (485)
                      .+.+.+||.|..     +.+..+.-..+.|+|+ |.-+++| | +++++++|++|+|..+||   -.++||| .++.++.
T Consensus       332 ~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGP---YTirGYyrap~HNa~  408 (542)
T COG1021         332 QLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGP---YTIRGYYRAPEHNAR  408 (542)
T ss_pred             hHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCC---eeeeeeccCchhhhh
Confidence            446889999952     3444455566899999 6669999 5 488899999999999999   9999999 8888888


Q ss_pred             cccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEE
Q psy5016         383 NITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  462 (485)
Q Consensus       383 ~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv  462 (485)
                      .|   +.+| +|+|||++++|+|||+.+.||.||+||++|++|..+|||+.|+.||.|.+|++|+.+|+..||+.+|||+
T Consensus       409 aF---~a~G-FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv  484 (542)
T COG1021         409 AF---DADG-FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIV  484 (542)
T ss_pred             cc---CcCC-ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEE
Confidence            88   8999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCHHHHHHHHHhh-CCC
Q psy5016         463 LKENAKLNADDIRTFCKGK-VSK  484 (485)
Q Consensus       463 ~~~~~~~~~~~l~~~l~~~-l~~  484 (485)
                      .++- ..+..+|+.++++. |+.
T Consensus       485 ~~~~-~~~~~qlr~~L~~~GlAa  506 (542)
T COG1021         485 VKEP-PLRAAQLRRFLRERGLAA  506 (542)
T ss_pred             ecCC-CCCHHHHHHHHHHcchhh
Confidence            9864 47889999999874 443

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.6e-29  Score=272.32  Aligned_cols=248  Identities=15%  Similarity=0.135  Sum_probs=187.7

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhc-ccCCCcccccchh-hccchhhhH--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ-KSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~-~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ..+.+.++|||||||.||.++++|.+...+...... .+.+...+..... |++|.++..                    
T Consensus       175 ~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~  254 (579)
T PRK09192        175 PDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRD  254 (579)
T ss_pred             CCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHH
Confidence            345677899999999999999999988776654444 3444322221111 444432221                    


Q ss_pred             -------------------------------------------h----hhhccCCCCCHHHHHHHHhhhhhccc--Cccc
Q psy5016         284 -------------------------------------------L----SSEYNSYAGPVTLRRNLIDPLEIVQN--RIDD  314 (485)
Q Consensus       284 -------------------------------------------~----~~l~~g~~~~~~l~~~~~~~~~~~~~--~~i~  314 (485)
                                                                 +    ..++||+++++.+.+.+.+.++..+.  ..++
T Consensus       255 ~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~  334 (579)
T PRK09192        255 FARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFM  334 (579)
T ss_pred             HHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcc
Confidence                                                       0    01267889999999998888764322  2367


Q ss_pred             cccccCCCCC----CCcc----------------------------CccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         315 VEYEFQEKMF----KDVK----------------------------NYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       315 ~~YG~TEt~~----~~~~----------------------------~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      +.||+||++.    ....                            .....++|+|+|+++++| |+ +..++.|+.|||
T Consensus       335 ~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel  414 (579)
T PRK09192        335 PSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHI  414 (579)
T ss_pred             cccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEE
Confidence            9999999632    1000                            011357999999999999 54 566899999999


Q ss_pred             EEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCc
Q psy5016         361 WPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV  440 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V  440 (485)
                      +++|+   +++.|||+.+.+.+.+   ..+| ||+|||+|++ ++|+++++||+||+||++|++|+|.|||++|.+||+|
T Consensus       415 ~i~g~---~~~~gY~~~~~~~~~~---~~dg-w~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V  486 (579)
T PRK09192        415 CVRGP---SLMSGYFRDEESQDVL---AADG-WLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPEL  486 (579)
T ss_pred             EecCC---chhhhhcCCccccccc---cCCc-eeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCc
Confidence            99999   9999999446666655   4678 9999999999 8999999999999999999999999999999999999


Q ss_pred             c--EEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhC
Q psy5016         441 L--EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV  482 (485)
Q Consensus       441 ~--ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l  482 (485)
                      .  +++|++++++. ++.++++++..++...+.++|.+++++.+
T Consensus       487 ~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l  529 (579)
T PRK09192        487 RSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALV  529 (579)
T ss_pred             cCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHH
Confidence            8  89999999875 55888888876655556678888888765

>KOG1176|consensus

Probab=99.96  E-value=6.7e-30  Score=270.78  Aligned_cols=167  Identities=32%  Similarity=0.456  Sum_probs=155.5

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhh
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK   87 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~   87 (485)
                      +++++  ++++.+.+|.++.|+.+++++.|||+++|+.+|.|||+||++|+++|..+|||+||                 
T Consensus       351 k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TG-----------------  413 (537)
T KOG1176|consen  351 KPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTG-----------------  413 (537)
T ss_pred             cccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccC-----------------
Confidence            56777  88899999999999999999999999999999999999999999999988999999                 


Q ss_pred             cchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          88 LKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                          |+|++|+||+++|++|.||+||.+|++|+|.|||.+|.+||+|.||+|+|.+|+..||.+
T Consensus       414 --------------------DiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p  473 (537)
T KOG1176|consen  414 --------------------DLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETP  473 (537)
T ss_pred             --------------------ceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcc
Confidence                                999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCcCCCHHHHHHhhcccchhh------HhhhhhhcCCCCCCCccc
Q psy5016         168 GISIKLKENAKLNAYEDKSISSDYHEFE------TMYDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~~~~  213 (485)
                      +|+|+.+++...+.++|.++|+++...+      .+.++|++++++++..+.
T Consensus       474 ~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~  525 (537)
T KOG1176|consen  474 AAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRK  525 (537)
T ss_pred             eEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHH
Confidence            9999999999999999999999886653      457788888888765433

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=9.9e-29  Score=263.82  Aligned_cols=249  Identities=24%  Similarity=0.253  Sum_probs=201.9

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ...+.+.++|||||||.||.+.+++...............+...+..... |++|.++...                   
T Consensus       165 ~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~  244 (521)
T PRK06187        165 DENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDP  244 (521)
T ss_pred             CccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCCCH
Confidence            33456778999999999999999998877766665555555432222211 4454433210                   


Q ss_pred             ----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         285 ----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       285 ----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                              ..+++|+++++++.+.+.+.|+    ..+++.||+||++.
T Consensus       245 ~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~----~~v~~~YG~tE~~~  320 (521)
T PRK06187        245 ENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFG----IDLVQGYGMTETSP  320 (521)
T ss_pred             HHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhC----cchheeeccCccCc
Confidence                                                    0127899999999999999884    45679999999642


Q ss_pred             CC----cc-C-----ccccCcccccCCcEEEE-cC-CCCCCC--CCceEEEEecCCCCccccccc-CcccccccccccCC
Q psy5016         325 KD----VK-N-----YLITPALKGLYHFKKWM-NP-KFSTTT--RKVALTWPNSMDSEARIYHYK-KYLREEENITVPDS  389 (485)
Q Consensus       325 ~~----~~-~-----~~~~s~G~p~pg~~v~I-d~-~~~~~~--g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~  389 (485)
                      ..    .. .     ....++|+|++++.++| |+ +..++.  |+.|||+++++   .++.||+ +++.+.+.|    .
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~---~~~~~y~~~~~~~~~~~----~  393 (521)
T PRK06187        321 VVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGP---WLMQGYWNRPEATAETI----D  393 (521)
T ss_pred             ccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECc---chhhhhcCCHHHHHHHh----h
Confidence            11    11 1     25678999999999999 65 556777  99999999999   9999999 777777777    5


Q ss_pred             CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC
Q psy5016         390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL  469 (485)
Q Consensus       390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~  469 (485)
                      +| ||+|||+++++++|++++.||.+|+||++|.+|+|.+||++|.++++|.+++|++.+++..++.++++++++++...
T Consensus       394 ~~-~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  472 (521)
T PRK06187        394 GG-WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATL  472 (521)
T ss_pred             CC-ceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCC
Confidence            77 99999999999999999999999999999999999999999999999999999999998888999999999887777


Q ss_pred             CHHHHHHHHHhhCCCC
Q psy5016         470 NADDIRTFCKGKVSKF  485 (485)
Q Consensus       470 ~~~~l~~~l~~~l~~y  485 (485)
                      +..+++++++++|++|
T Consensus       473 ~~~~l~~~l~~~l~~~  488 (521)
T PRK06187        473 DAKELRAFLRGRLAKF  488 (521)
T ss_pred             CHHHHHHHHHHhccCC
Confidence            8899999999998865

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=1.2e-28  Score=266.81  Aligned_cols=185  Identities=24%  Similarity=0.310  Sum_probs=159.3

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      +||+++++.+.+++.+.++    ..+++.||+||++..     .......+++|.|+|++.++| |+ +..++.|+.|||
T Consensus       332 ~gg~~~~~~~~~~~~~~~g----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel  407 (560)
T PRK08974        332 GGGMAVQQAVAERWVKLTG----QYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGEL  407 (560)
T ss_pred             ecCccCCHHHHHHHHHHhC----CcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCceEE
Confidence            7888999999988888776    456799999996431     112234678999999999999 54 667899999999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  439 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~  439 (485)
                      +++|+   +++.||+ +++.+...|    .+| ||+|||+++++++|+++++||.+|+|+++|.+|+|.+||++|.+||+
T Consensus       408 ~v~g~---~~~~gy~~~~~~~~~~~----~~g-~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~  479 (560)
T PRK08974        408 WVKGP---QVMLGYWQRPEATDEVI----KDG-WLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPK  479 (560)
T ss_pred             EEecC---CcchhhcCChhhhhhhh----hcC-CcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCC
Confidence            99999   9999999 777777766    578 99999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         440 VLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       440 V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      |.+++|++.++...++.++++++..+ ...+.+++.++++++|++|
T Consensus       480 v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~  524 (560)
T PRK08974        480 VLEVAAVGVPSEVSGEAVKIFVVKKD-PSLTEEELITHCRRHLTGY  524 (560)
T ss_pred             eeEEEEEeeecCCcceEEEEEEECCC-CCCCHHHHHHHHHhhcccc
Confidence            99999999999888888888877654 3456789999999988865

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=1e-28  Score=288.52  Aligned_cols=245  Identities=13%  Similarity=0.051  Sum_probs=189.9

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ..++.+.++|||||||.||.++++|++...+.........++..+...+. |++|.++...                   
T Consensus       791 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~  870 (1140)
T PRK06814        791 DPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPL  870 (1140)
T ss_pred             CCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcc
Confidence            44566778999999999999999999887776666665665533322222 6777655410                   


Q ss_pred             ----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         285 ----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       285 ----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                              ..++||+++++++.+.+.+.++    ..+++.||+||++.
T Consensus       871 ~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~~  946 (1140)
T PRK06814        871 HYRIIPELIYDTNATILFGTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFG----IRILEGYGVTETAP  946 (1140)
T ss_pred             cHHHHHHHHHhcCCEEEEecHHHHHHHHhhcccccccceeEEEEcCCcCCHHHHHHHHHHhC----CcEEeccccccccc
Confidence                                                    0016889999999999888876    45679999999753


Q ss_pred             ----CCccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCce
Q psy5016         325 ----KDVKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQ  399 (485)
Q Consensus       325 ----~~~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~  399 (485)
                          ........+++|+|+|++++++ +..   ..++.|||+++|+   +++.||++.+... .+ ....+| ||+|||+
T Consensus       947 ~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~---~~~~~Gel~v~g~---~~~~gY~~~~~~~-~~-~~~~~g-~~~TGDl 1017 (1140)
T PRK06814        947 VIALNTPMHNKAGTVGRLLPGIEYRLEPVP---GIDEGGRLFVRGP---NVMLGYLRAENPG-VL-EPPADG-WYDTGDI 1017 (1140)
T ss_pred             eEEecCCCCCCCCcCCccCCCCeEEEeecC---CCCCceEEEEeCC---CcchhhcCCCCCC-cc-ccCCCC-eEecCCE
Confidence                1122345679999999999999 432   2367899999999   9999999433211 11 112577 9999999


Q ss_pred             EEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHH
Q psy5016         400 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK  479 (485)
Q Consensus       400 ~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~  479 (485)
                      +++|+||++++.||.||+||++|++|+|.|||++|.+|+.|.+++|++++++..|+.+++++.   +...+.+++.++++
T Consensus      1018 ~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~~l~~~~~ 1094 (1140)
T PRK06814       1018 VTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATRAAFLAHAK 1094 (1140)
T ss_pred             EEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988988877754   23467789999998


Q ss_pred             hh-CCCC
Q psy5016         480 GK-VSKF  485 (485)
Q Consensus       480 ~~-l~~y  485 (485)
                      ++ +++|
T Consensus      1095 ~~~l~~~ 1101 (1140)
T PRK06814       1095 AAGASEL 1101 (1140)
T ss_pred             HcCCCcc
Confidence            74 7664

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=2.2e-28  Score=261.03  Aligned_cols=186  Identities=25%  Similarity=0.328  Sum_probs=159.7

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC---CC--ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF---KD--VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~---~~--~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      ++|++++.++++++.+.++    ..+++.||+||++.   ..  ......+++|+|+ ++.++| |+ +..++.|+.|||
T Consensus       269 ~~g~~~~~~~~~~~~~~~~----~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel  343 (502)
T PRK08276        269 HAAAPCPVEVKRAMIDWWG----PIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILDEDGNELPPGEIGTV  343 (502)
T ss_pred             ecCCCCCHHHHHHHHHHhC----cHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEECCCCCCCcCCCceEE
Confidence            7899999999999998876    44679999999753   11  1124457899999 889999 65 566889999999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  439 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~  439 (485)
                      +++|+   +++.||+ +++.+...+   .+++ ||+|||++++|++|++++.||.||+||++|.+|+|.+||++|++||+
T Consensus       344 ~v~~~---~~~~gy~~~~~~~~~~~---~~~~-~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~  416 (502)
T PRK08276        344 YFEMD---GYPFEYHNDPEKTAAAR---NPHG-WVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPK  416 (502)
T ss_pred             EEECC---CccchhcCCHHHHHHHh---cCCC-ceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCC
Confidence            99999   9999999 888887777   3457 99999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH---HHHHHHHHhhCCCC
Q psy5016         440 VLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       440 V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~y  485 (485)
                      |.+++|++.+++..++.++++|+++++...+.   +++.++++++|++|
T Consensus       417 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~  465 (502)
T PRK08276        417 VADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHY  465 (502)
T ss_pred             cceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCC
Confidence            99999999999888999999999987644333   47899999998765

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.96  E-value=2.9e-28  Score=259.54  Aligned_cols=252  Identities=12%  Similarity=0.003  Sum_probs=190.4

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ....+.++|||||||.||.++++|.............+.+...+...+. |++|..+..                     
T Consensus       142 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~  221 (503)
T PRK04813        142 GDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTA  221 (503)
T ss_pred             CCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhc
Confidence            3455678999999999999999999877666554444443311111111 222211100                     


Q ss_pred             -----------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         284 -----------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       284 -----------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                               -..+++|+++++.+.+.+.+.|+.   ..+++.||+||+
T Consensus       222 ~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~---~~~~~~yG~tE~  298 (503)
T PRK04813        222 NFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPS---ATIYNTYGPTEA  298 (503)
T ss_pred             CHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCC---ceEEeCcccchh
Confidence                                                     011278999999999999998853   456799999996


Q ss_pred             CCC---------CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCC
Q psy5016         323 MFK---------DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSA  390 (485)
Q Consensus       323 ~~~---------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~  390 (485)
                      +..         ........++|+|.++++++| |+ +..++.|+.|||+++|+   +++.||+ +++.+...|...+..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~g~  375 (503)
T PRK04813        299 TVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGP---SVSKGYLNNPEKTAEAFFTFDGQ  375 (503)
T ss_pred             eeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEecc---ccccccCCChhHhHHhhccCCCc
Confidence            421         112344568999999999999 54 66689999999999999   9999999 777777666322223


Q ss_pred             CCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC-
Q psy5016         391 GRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL-  469 (485)
Q Consensus       391 g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~-  469 (485)
                      + ||+|||++++ ++|++++.||.+|+|+++|.+|+|.+||+++.++|+|.+++|++.++...++.+++++++.++... 
T Consensus       376 ~-~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  453 (503)
T PRK04813        376 P-AYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFER  453 (503)
T ss_pred             e-eEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccc
Confidence            4 9999999999 899999999999999999999999999999999999999999998887778889999988764211 


Q ss_pred             ---CHHHHHHHHHhhCCCC
Q psy5016         470 ---NADDIRTFCKGKVSKF  485 (485)
Q Consensus       470 ---~~~~l~~~l~~~l~~y  485 (485)
                         -.++++++|+++|++|
T Consensus       454 ~~~~~~~l~~~~~~~l~~~  472 (503)
T PRK04813        454 EFELTKAIKKELKERLMEY  472 (503)
T ss_pred             cchhHHHHHHHHHhhCccc
Confidence               1246888888888754

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.96  E-value=4.8e-28  Score=261.30  Aligned_cols=184  Identities=19%  Similarity=0.198  Sum_probs=155.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-----ccC----------ccccCcccccCCcEEEE-cC-CC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-----VKN----------YLITPALKGLYHFKKWM-NP-KF  350 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-----~~~----------~~~~s~G~p~pg~~v~I-d~-~~  350 (485)
                      ++|+++++++++++.+ ++    ..+++.||+||++...     ...          ....++|+|+++++++| |+ +.
T Consensus       301 ~~G~~l~~~~~~~~~~-~~----~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~  375 (542)
T PRK06018        301 CGGSAMPRSMIKAFED-MG----VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGK  375 (542)
T ss_pred             EcCCCCCHHHHHHHHH-hC----CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCC
Confidence            7899999999999988 65    4568999999975311     000          12357899999999999 65 44


Q ss_pred             CCCC--CCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChH
Q psy5016         351 STTT--RKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPK  428 (485)
Q Consensus       351 ~~~~--g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~  428 (485)
                      .++.  +..|||+++|+   +++.|||+.+  ...+   +.+| ||+|||++++|++|++++.||.+|+|+++|.+|+|.
T Consensus       376 ~~~~~~~~~Gel~i~g~---~~~~gy~~~~--~~~~---~~~~-~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~  446 (542)
T PRK06018        376 ELPWDGKTFGRLKVRGP---AVAAAYYRVD--GEIL---DDDG-FFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSI  446 (542)
T ss_pred             CCCCCCCceeEEEEecC---CcchhhhcCc--ccEe---cCCc-EEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHH
Confidence            4654  36799999999   9999999632  2233   4577 999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       429 eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      |||+++.+||+|.+++|++.+++..++.+.++|++.++...+.+++.+++++++++|
T Consensus       447 eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  503 (542)
T PRK06018        447 DLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKW  503 (542)
T ss_pred             HHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccc
Confidence            999999999999999999999988889999999998887788899999999999875

>PLN02479 acetate-CoA ligase

Probab=99.96  E-value=1.8e-28  Score=266.15  Aligned_cols=245  Identities=20%  Similarity=0.188  Sum_probs=183.8

Q ss_pred             CCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccch-hhccchhhhH-----------------------
Q psy5016         228 NGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKC-EKSMQGWAKT-----------------------  283 (485)
Q Consensus       228 ~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~~~~~-----------------------  283 (485)
                      ..+.++|||||||.||+++++|.............+.+...+.... .|++|..+..                       
T Consensus       196 ~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~  275 (567)
T PLN02479        196 QSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAI  275 (567)
T ss_pred             cceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHH
Confidence            3455799999999999999999876544433333333332111111 1445543311                       


Q ss_pred             ------------------h-------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-
Q psy5016         284 ------------------L-------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-  325 (485)
Q Consensus       284 ------------------~-------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-  325 (485)
                                        +                   ..+.+|+++++.+.+.+.+. +    ..+++.||+||++.. 
T Consensus       276 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~----~~~~~~yG~tE~~~~~  350 (567)
T PLN02479        276 YSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK-G----FRVTHTYGLSETYGPS  350 (567)
T ss_pred             HHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc-C----Cceecccccccccccc
Confidence                              0                   01267888888888877654 3    345799999997311 


Q ss_pred             C-c-------------cCccccCcccccCCcE-EEE-cC--CCCCCCC--CceEEEEecCCCCccccccc-Ccccccccc
Q psy5016         326 D-V-------------KNYLITPALKGLYHFK-KWM-NP--KFSTTTR--KVALTWPNSMDSEARIYHYK-KYLREEENI  384 (485)
Q Consensus       326 ~-~-------------~~~~~~s~G~p~pg~~-v~I-d~--~~~~~~g--~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~  384 (485)
                      . .             ......+.|.+.+++. ++| |+  +..++.+  ++|||+++|+   +++.||| +++.+.+.|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~---~~~~GY~~~~~~t~~~~  427 (567)
T PLN02479        351 TVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGN---MVMKGYLKNPKANEEAF  427 (567)
T ss_pred             cceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEecc---chhhhhhcCcccccchh
Confidence            0 0             0011246788888875 778 63  4556653  6799999999   9999999 898888888


Q ss_pred             cccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016         385 TVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  464 (485)
Q Consensus       385 ~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~  464 (485)
                          .+| ||+|||++++|++|+++|+||.+|+||++|.+|+|.|||++|.+||.|.+++|++.+++..++.+++++++.
T Consensus       428 ----~~g-~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  502 (567)
T PLN02479        428 ----ANG-WFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLK  502 (567)
T ss_pred             ----cCC-ceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEec
Confidence                578 999999999999999999999999999999999999999999999999999999999888889999999987


Q ss_pred             CCCC-----CCHHHHHHHHHhhCCCC
Q psy5016         465 ENAK-----LNADDIRTFCKGKVSKF  485 (485)
Q Consensus       465 ~~~~-----~~~~~l~~~l~~~l~~y  485 (485)
                      ++..     ...++|.++++++|++|
T Consensus       503 ~~~~~~~~~~~~~~l~~~~~~~l~~~  528 (567)
T PLN02479        503 PGVDKSDEAALAEDIMKFCRERLPAY  528 (567)
T ss_pred             CcccccchhhhHHHHHHHHHhhcccc
Confidence            6542     33568999999999876

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=3.4e-29  Score=274.94  Aligned_cols=155  Identities=10%  Similarity=-0.051  Sum_probs=126.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhh-cc-cCccccccccCCCCCC----CccCccccCcccccCCcEEEEcCCCCCCCCCceEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEI-VQ-NRIDDVEYEFQEKMFK----DVKNYLITPALKGLYHFKKWMNPKFSTTTRKVALTW  361 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~-~~-~~~i~~~YG~TEt~~~----~~~~~~~~s~G~p~pg~~v~Id~~~~~~~g~~Gel~  361 (485)
                      +||+++++++.+++.+.+.. .+ ...+++.||+||++..    .......+++|+|+||++++|     ++.|++|||+
T Consensus       353 ~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i-----~~~G~~GEl~  427 (624)
T PRK12582        353 YGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKL-----APVGDKYEVR  427 (624)
T ss_pred             ecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEE-----ccCCCceEEE
Confidence            78899999999888875321 11 1246799999997531    122345789999999999999     2347789999


Q ss_pred             EecCCCCccccccc-CcccccccccccCCCCCeEecCceEEE-e---cCCeEEEEecCCCeEE-ECcEeeChHHHH--HH
Q psy5016         362 PNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVL-R---EDGYGQVVGRIKDMII-RGGENIYPKEIE--EF  433 (485)
Q Consensus       362 v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~-d---~~G~l~i~GR~~d~I~-~~G~~v~p~eIE--~~  433 (485)
                      |+|+   +++.||| +++.+++.|   +.+| ||+|||+|++ |   ++|+++|+||+||+|| .+|++|+|.+||  .+
T Consensus       428 vrg~---~v~~GY~~~p~~t~~~f---~~dg-w~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~  500 (624)
T PRK12582        428 VKGP---NVTPGYHKDPELTAAAF---DEEG-FYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAV  500 (624)
T ss_pred             EECC---cccccccCCccchhhhc---CccC-CccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHH
Confidence            9999   9999999 888888877   5678 9999999998 4   5699999999999999 589999998885  68


Q ss_pred             HHcCCCccEEEEEEEeCCCCC
Q psy5016         434 IQTHPNVLEAYAYGVPDERMG  454 (485)
Q Consensus       434 l~~~~~V~ea~vv~~~~~~~g  454 (485)
                      +.+||.|.+|+|+|.+++..|
T Consensus       501 l~~~p~V~~a~VvG~~~~~~g  521 (624)
T PRK12582        501 AACSPVIHDAVVAGQDRAFIG  521 (624)
T ss_pred             HhcCcchheEEEEcCCCCcEE
Confidence            889999999999999876444

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=4.5e-28  Score=259.46  Aligned_cols=185  Identities=23%  Similarity=0.313  Sum_probs=156.1

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALT  360 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel  360 (485)
                      +||+++++++.+.+.+.++    ..+++.||+||++..     ......++++|+|+++ .++| |+ +..++.|+.|||
T Consensus       282 ~gg~~~~~~~~~~~~~~~g----~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel  356 (511)
T PRK13391        282 HAAAPCPPQVKEQMIDWWG----PIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEPGTI  356 (511)
T ss_pred             EccCCCCHHHHHHHHHHcC----CceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCceEE
Confidence            7899999999999988876    346799999997531     1112456799999999 5888 54 666889999999


Q ss_pred             EEecCCCCccccccc-CcccccccccccCCC-CCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVPDSA-GRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~-g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      +++|+   . +.||| +++.+...+   ..+ + ||+|||+|++|++|++++.||.+|+||++|.+|+|.|||++|.+||
T Consensus       357 ~~~g~---~-~~gy~~~~~~~~~~~---~~~~~-w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~  428 (511)
T PRK13391        357 WFEGG---R-PFEYLNDPAKTAEAR---HPDGT-WSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHP  428 (511)
T ss_pred             EEecC---c-ceEEcCChhHhHHhh---ccCCC-EEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCC
Confidence            99998   4 56899 777777766   333 6 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCC---CHHHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKL---NADDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~---~~~~l~~~l~~~l~~y  485 (485)
                      .|.+++|++.+++..++.+++++++.++...   ..++++++|+++|++|
T Consensus       429 ~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  478 (511)
T PRK13391        429 KVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQ  478 (511)
T ss_pred             CcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccC
Confidence            9999999999999889999999988764432   2478999999999876

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.96  E-value=5e-28  Score=261.03  Aligned_cols=245  Identities=18%  Similarity=0.163  Sum_probs=184.3

Q ss_pred             CCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccch-hhccchhhhH-----------------------
Q psy5016         228 NGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKC-EKSMQGWAKT-----------------------  283 (485)
Q Consensus       228 ~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~~~~~-----------------------  283 (485)
                      ..+.++|||||||.||.+++++.....+.........+...+...+ .|++|..+..                       
T Consensus       183 ~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~  262 (545)
T PRK08162        183 DAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLI  262 (545)
T ss_pred             CeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHH
Confidence            3466799999999999999999865544443333333331221111 1555543321                       


Q ss_pred             ------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC--
Q psy5016         284 ------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK--  325 (485)
Q Consensus       284 ------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~--  325 (485)
                                                          ...+++|+++++.+.+.+.+ ++    ..+++.||+||++..  
T Consensus       263 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~----~~~~~~YG~tE~~~~~~  337 (545)
T PRK08162        263 FDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEE-IG----FDLTHVYGLTETYGPAT  337 (545)
T ss_pred             HHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHH-hC----CceeecccccccCccee
Confidence                                                01126777788888777665 33    446799999996310  


Q ss_pred             C---cc----------CccccCcccccCCc-EEEE-cC--CCCCCC-C-CceEEEEecCCCCccccccc-Cccccccccc
Q psy5016         326 D---VK----------NYLITPALKGLYHF-KKWM-NP--KFSTTT-R-KVALTWPNSMDSEARIYHYK-KYLREEENIT  385 (485)
Q Consensus       326 ~---~~----------~~~~~s~G~p~pg~-~v~I-d~--~~~~~~-g-~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~  385 (485)
                      .   ..          .....++|.+++.. .++| |+  +.+++. | ++|||+++|+   +++.||+ +++.+...| 
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~---~~~~gY~~~~~~~~~~~-  413 (545)
T PRK08162        338 VCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGN---IVMKGYLKNPKATEEAF-  413 (545)
T ss_pred             ecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecC---cchhhhcCChhhhHHHh-
Confidence            0   00          11234667776544 5677 64  455654 3 4699999999   9999999 888888877 


Q ss_pred             ccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         386 VPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       386 ~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                         .+| ||+|||++++|++|+++++||.+|+||++|.+|+|.|||++|.+||+|.+++|++.+++..++.+++++++++
T Consensus       414 ---~~g-~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~  489 (545)
T PRK08162        414 ---AGG-WFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKD  489 (545)
T ss_pred             ---hCC-CcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCC
Confidence               578 9999999999999999999999999999999999999999999999999999999999888899999999988


Q ss_pred             CCCCCHHHHHHHHHhhCCCC
Q psy5016         466 NAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       466 ~~~~~~~~l~~~l~~~l~~y  485 (485)
                      +...+.++|+++|+++|++|
T Consensus       490 ~~~~~~~~l~~~~~~~l~~~  509 (545)
T PRK08162        490 GASATEEEIIAHCREHLAGF  509 (545)
T ss_pred             CCCCCHHHHHHHHHHhcccc
Confidence            76678889999999999876

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.96  E-value=4.9e-28  Score=277.84  Aligned_cols=183  Identities=13%  Similarity=0.054  Sum_probs=146.6

Q ss_pred             CCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC--CccCccccCcccccCCc-EEEE------------cC-C--CC
Q psy5016         290 SYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK--DVKNYLITPALKGLYHF-KKWM------------NP-K--FS  351 (485)
Q Consensus       290 g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~--~~~~~~~~s~G~p~pg~-~v~I------------d~-~--~~  351 (485)
                      |+++++++++.+.+.|+.   ..+++.||+||++..  .....+++++|+|+|++ +++|            |+ +  ..
T Consensus       727 g~gl~~~l~~~~~~~~~~---~~l~~~YG~TE~~~~~~~~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~  803 (994)
T PRK07868        727 GSGMPTGLWERVVEAFAP---AHVVEFFATTDGQAVLANVSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRR  803 (994)
T ss_pred             cCCCCHHHHHHHHHHhCc---hheeeeeecccccccccccCCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEE
Confidence            556899999999988863   345799999997432  11234678999999998 5654            22 2  34


Q ss_pred             CCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHH
Q psy5016         352 TTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE  431 (485)
Q Consensus       352 ~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE  431 (485)
                      +++|+.|||+++++   .    |++++.+.....+.+.+| ||+|||+|++|+||+|+|+||+||+||++|.+|+|.|||
T Consensus       804 ~~~ge~Gel~~~~~---~----~~~p~~t~~~~~~~~~dg-w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE  875 (994)
T PRK07868        804 AEVNEVGVLLARAR---G----PIDPTASVKRGVFAPADT-WISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVT  875 (994)
T ss_pred             cCCCCceEEEEecC---C----CCChhhhhHhcccccCCE-EEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHH
Confidence            78899999999998   4    345544322110112366 999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         432 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       432 ~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      ++|.+||+|.+|+|++++++. ++.++|+|+++++...+.++|+++|++ |++|
T Consensus       876 ~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y  927 (994)
T PRK07868        876 DALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS-LPVG  927 (994)
T ss_pred             HHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCC
Confidence            999999999999999999875 688999999988877888999999986 7776

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.1e-27  Score=249.80  Aligned_cols=224  Identities=17%  Similarity=0.128  Sum_probs=177.6

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccc-hhhccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADK-CEKSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~-~~pl~~~~~~~~-------------------  284 (485)
                      .....+.++|||||||.||.++++|.+...+...+...+.+...+... +.|++|.++...                   
T Consensus        99 ~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~  178 (414)
T PRK08308         99 LAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKN  178 (414)
T ss_pred             CCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence            345567789999999999999999998877766666555554222211 226677665420                   


Q ss_pred             -------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-
Q psy5016         285 -------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-  326 (485)
Q Consensus       285 -------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-  326 (485)
                                                           ..+++|+++++++.+.+.+..     ..+++.||+||+++.. 
T Consensus       179 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-----~~~~~~YG~tE~~~~~~  253 (414)
T PRK08308        179 PKFALNILRNTPQHILYAVPLMLHILGRLLPGTFQFHAVMTSGTPLPEAWFYKLRERT-----TYMMQQYGCSEAGCVSI  253 (414)
T ss_pred             HHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCccccccEEEEccCCCCHHHHHHHHHhC-----ChhhhccCccccCCeee
Confidence                                                 012677888888888877653     3457999999976422 


Q ss_pred             -ccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec
Q psy5016         327 -VKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE  404 (485)
Q Consensus       327 -~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~  404 (485)
                       .....++++|+|+|++++++ ++     .++.|||++++.                        ++ ||+|||++++|+
T Consensus       254 ~~~~~~~~~~G~p~~~~~~~~~~~-----~~~~gel~v~~~------------------------~~-~~~TGDl~~~~~  303 (414)
T PRK08308        254 CPDMKSHLDLGNPLPHVSVSAGSD-----ENAPEEIVVKMG------------------------DK-EIFTKDLGYKSE  303 (414)
T ss_pred             cCCCCCCCccCccCCCeEEEEecC-----CCCCceEEEEcC------------------------Cc-eEECCceEEECC
Confidence             12235678999999999999 43     356799999866                        35 999999999999


Q ss_pred             CCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCC
Q psy5016         405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSK  484 (485)
Q Consensus       405 ~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~  484 (485)
                      ||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+.++++.++  ..+.++++++|+++|++
T Consensus       304 dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~l~~  381 (414)
T PRK08308        304 RGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQLREWCIQHLAP  381 (414)
T ss_pred             CccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHHHHHHHHHhCcc
Confidence            9999999999999999999999999999999999999999999999988999999988764  46788999999999987


Q ss_pred             C
Q psy5016         485 F  485 (485)
Q Consensus       485 y  485 (485)
                      |
T Consensus       382 ~  382 (414)
T PRK08308        382 Y  382 (414)
T ss_pred             c
Confidence            6

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.95  E-value=6.5e-28  Score=262.17  Aligned_cols=174  Identities=20%  Similarity=0.163  Sum_probs=137.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhccc--CccccccccCCCCCCCc----c-------------------------CccccCcc
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQN--RIDDVEYEFQEKMFKDV----K-------------------------NYLITPAL  336 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~--~~i~~~YG~TEt~~~~~----~-------------------------~~~~~s~G  336 (485)
                      +||+++++++.+++.+.|+..+.  ..+++.||+||++....    .                         .....++|
T Consensus       295 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g  374 (578)
T PRK05850        295 SGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYG  374 (578)
T ss_pred             ECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEecc
Confidence            78888999999999888864332  34679999999642100    0                         00112345


Q ss_pred             cccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc--c------CCCCCeEecCceEEEec
Q psy5016         337 KGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV--P------DSAGRSIFEKDQFVLRE  404 (485)
Q Consensus       337 ~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~--~------~~~g~~~~TGD~~~~d~  404 (485)
                      +|. +.+++| |+  +..+++|+.|||+++|+   +++.||| +++.+++.|..  .      ..++ ||+|||+|++| 
T Consensus       375 ~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~-w~~TGDl~~~~-  448 (578)
T PRK05850        375 SPR-SPTVRIVDPDTCIECPAGTVGEIWVHGD---NVAAGYWQKPEETERTFGATLVDPSPGTPEGP-WLRTGDLGFIS-  448 (578)
T ss_pred             CCC-CCEEEEEcCCCCcCCCCCCEEEEEEecC---cccccccCChhhhHHHhhcccccccccCCCCC-eeeccceeeEE-
Confidence            554 578888 64  45689999999999999   9999999 88888887721  0      0245 99999999998 


Q ss_pred             CCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC
Q psy5016         405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL  469 (485)
Q Consensus       405 ~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~  469 (485)
                      +|+++|+||++|+||++|++|+|.|||++|.+||.+. ++|++++++ .++.++++|+++++...
T Consensus       449 ~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~  511 (578)
T PRK05850        449 EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDS  511 (578)
T ss_pred             CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCc
Confidence            8999999999999999999999999999999999854 889999887 67899999998876443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.95  E-value=3.9e-27  Score=246.48  Aligned_cols=242  Identities=16%  Similarity=0.086  Sum_probs=187.5

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ..++.+.++|||||||.||.+.+++.............+++...+..... |++|..+...                   
T Consensus       109 ~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  188 (436)
T TIGR01923       109 NMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ  188 (436)
T ss_pred             CcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHHH
Confidence            34556677999999999999999999887777766666666533322222 5566544320                   


Q ss_pred             ----------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCc---
Q psy5016         285 ----------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDV---  327 (485)
Q Consensus       285 ----------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~---  327 (485)
                                                        ..+++|+++++++.+++.+ ++    ..+++.||+||++....   
T Consensus       189 ~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~-~~----~~~~~~YG~tE~~~~~~~~~  263 (436)
T TIGR01923       189 LLEMIANERVTHISLVPTQLNRLLDEGGHNENLRKILLGGSAIPAPLIEEAQQ-YG----LPIYLSYGMTETCSQVTTAT  263 (436)
T ss_pred             HHHHHHHhCCeEEEeHHHHHHHHHhCcCCCCceEEEEECCCCCCHHHHHHHHH-hC----CceeeEecCCccchhccCcC
Confidence                                              0127799999998887754 33    44679999999743111   


Q ss_pred             --cCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEe
Q psy5016         328 --KNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLR  403 (485)
Q Consensus       328 --~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d  403 (485)
                        ......++|+|+++++++| +++.    ++.|||+++++   .++.||+ +++.+...+    .+| ||+|||++++|
T Consensus       264 ~~~~~~~~~~G~~~~~~~~~i~~~~~----~~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~~-~~~TGD~~~~~  331 (436)
T TIGR01923       264 PEMLHARPDVGRPLAGREIKIKVDNK----EGHGEIMVKGA---NLMKGYLYQGELTPAFE----QQG-WFNTGDIGELD  331 (436)
T ss_pred             ccccccccCCCccCCCcEEEEEeCCC----CCceEEEEECC---ccchhhCCChhhhhhhh----cCC-CeeccceEEEc
Confidence              1111224999999999999 4422    37799999999   9999999 555544433    567 99999999999


Q ss_pred             cCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCC
Q psy5016         404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVS  483 (485)
Q Consensus       404 ~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~  483 (485)
                      +||++++.||.+|+||++|.+|+|.+||++|.++|.|.+++|++.++...++.+.++++++++  .+..++.++|++.|+
T Consensus       332 ~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~l~~~l~  409 (436)
T TIGR01923       332 GEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--ISQAKLIAYLTEKLA  409 (436)
T ss_pred             CCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CCHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999888778889999988753  677899999999988


Q ss_pred             CC
Q psy5016         484 KF  485 (485)
Q Consensus       484 ~y  485 (485)
                      +|
T Consensus       410 ~~  411 (436)
T TIGR01923       410 KY  411 (436)
T ss_pred             CC
Confidence            65

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1177|consensus

Probab=99.95  E-value=2.8e-28  Score=244.44  Aligned_cols=144  Identities=51%  Similarity=0.844  Sum_probs=137.4

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      .+++.++.|+|.+|.++|.|++|||++||++.|+|||+++++|+++++.|+||+||                        
T Consensus       411 ~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TG------------------------  466 (596)
T KOG1177|consen  411 LMDHYEAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTG------------------------  466 (596)
T ss_pred             cccccccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecC------------------------
Confidence            78899999999999999999999999999999999999999999999999999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++.+||+|+++++||.+|||+.||+||+|.|||++|.+||.|.++.|+|++|++.||.++++|-+.
T Consensus       467 -------------Di~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLq  533 (596)
T KOG1177|consen  467 -------------DIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQ  533 (596)
T ss_pred             -------------ceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEee
Confidence                         9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcC--CCHHHHHHhhcccchhh
Q psy5016         175 ENAK--LNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~--~~~~~l~~~l~~~~~~~  195 (485)
                      ++..  .+.++|+.+|+.+....
T Consensus       534 e~~e~~~t~E~lKa~Ck~klaHF  556 (596)
T KOG1177|consen  534 EGAEGKTTAETLKAMCKGKLAHF  556 (596)
T ss_pred             ccccccccHHHHHHHHhcccccc
Confidence            8755  58999999998774443

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.8e-26  Score=247.20  Aligned_cols=190  Identities=20%  Similarity=0.252  Sum_probs=156.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCcc--CccccCcc--cccCCcEEEE-cC-CCCCCCCCc--eE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVK--NYLITPAL--KGLYHFKKWM-NP-KFSTTTRKV--AL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~--~~~~~s~G--~p~pg~~v~I-d~-~~~~~~g~~--Ge  359 (485)
                      +||+++++++.+++.+.++.   ..+++.||+||++.....  .....+.|  ++.++..++| |+ +..+++|+.  |+
T Consensus       303 ~gG~~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~  379 (533)
T PRK07798        303 SGGALFSPSVKEALLELLPN---VVLTDSIGSSETGFGGSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGW  379 (533)
T ss_pred             ECCCCCCHHHHHHHHHHcCC---CeEEeeecccccccccccCCCCCCccCCCCccCCCceEEEECCCCCCCCCCCCCeeE
Confidence            78999999999999988742   456799999997432111  11222344  7889999999 54 567888887  65


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      ++ +++   .++.||| +++.+++.|...+.++ ||+|||++++|++|++++.||.+|+||++|++|+|.+||++|.++|
T Consensus       380 l~-~~~---~~~~gy~~~~~~t~~~f~~~~~~~-~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~  454 (533)
T PRK07798        380 IA-RRG---HIPLGYYKDPEKTAETFPTIDGVR-YAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHP  454 (533)
T ss_pred             EE-eec---CccccccCChhhhHHhhccCCCCc-eEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCc
Confidence            54 667   7899999 7888887774323334 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      .|.+++|++.++...++.+.++++++++...+.++|+++++++|++|
T Consensus       455 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~  501 (533)
T PRK07798        455 DVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGY  501 (533)
T ss_pred             cceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccC
Confidence            99999999999888889999999998877778899999999999875

>KOG1180|consensus

Probab=99.95  E-value=4.5e-27  Score=239.29  Aligned_cols=167  Identities=14%  Similarity=0.068  Sum_probs=141.2

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC----CCCccCccccCcccccCCcEEEE-c--CCCCCCCC--Cce
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM----FKDVKNYLITPALKGLYHFKKWM-N--PKFSTTTR--KVA  358 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~----~~~~~~~~~~s~G~p~pg~~v~I-d--~~~~~~~g--~~G  358 (485)
                      +||+|+++++.+.+.--|-    .++.++||.|||+    .....+...+.+|.|++.+++++ |  ++.-.+.+  -.|
T Consensus       409 sGGapLS~dtQrF~nic~C----~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrG  484 (678)
T KOG1180|consen  409 SGGAPLSPDTQRFMNICFC----CPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRG  484 (678)
T ss_pred             eCCCCCCHHHHHHHHHhcc----ccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCc
Confidence            9999999998877665554    4567999999963    35566677889999999999999 4  32222222  259


Q ss_pred             EEEEecCCCCccccccc-CcccccccccccCCCC-CeEecCceEEEecCCeEEEEecCCCeEE-ECcEeeChHHHHHHHH
Q psy5016         359 LTWPNSMDSEARIYHYK-KYLREEENITVPDSAG-RSIFEKDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQ  435 (485)
Q Consensus       359 el~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g-~~~~TGD~~~~d~~G~l~i~GR~~d~I~-~~G~~v~p~eIE~~l~  435 (485)
                      ||+++|+   ++..||| |++.|++.|+.  ++| |||+|||+|.+.+||.|.|++|++|++| -+|+-|++.-||.++.
T Consensus       485 EI~i~G~---~vt~gY~kn~ekT~e~ft~--~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~  559 (678)
T KOG1180|consen  485 EILIGGP---NVTMGYYKNEEKTKEDFTV--EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALR  559 (678)
T ss_pred             eEEecCC---ccChhhhCChhhhhhhcee--cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHh
Confidence            9999999   9999999 99999999953  244 6999999999999999999999999999 6999999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                      +.|-|...+|++.....   .++++||++.+
T Consensus       560 s~p~V~NICvyAd~~~s---~~VaiVVPn~~  587 (678)
T KOG1180|consen  560 SSPYVDNICVYADSNKS---KPVAIVVPNQK  587 (678)
T ss_pred             cCcchhheEEecccccc---eeEEEEcCCch
Confidence            99999999999987654   59999998753

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=1.7e-26  Score=249.26  Aligned_cols=249  Identities=15%  Similarity=0.045  Sum_probs=175.7

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcc-cccch-hhccchhhhHh-------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWE-YADKC-EKSMQGWAKTL-------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~-~~~~~-~pl~~~~~~~~-------------------  284 (485)
                      ..+...++|||||||.||.++++|...............+... +...+ .|++|..+...                   
T Consensus       151 ~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~  230 (545)
T PRK07768        151 EDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMD  230 (545)
T ss_pred             CCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHH
Confidence            3555667999999999999999998877766555544444422 11111 15555332210                   


Q ss_pred             -------------------------------------------------hhhccCCCCCHHHHHHHHhhhhhccc--Ccc
Q psy5016         285 -------------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQN--RID  313 (485)
Q Consensus       285 -------------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~--~~i  313 (485)
                                                                       ..+++|+++++.+.+++.+....++.  ..+
T Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~  310 (545)
T PRK07768        231 FLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAI  310 (545)
T ss_pred             HHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccc
Confidence                                                             01166778888888887775332222  246


Q ss_pred             ccccccCCCCCC----Ccc--------------------------CccccCcccccCCcEEEE-c-CCCCCCCCCceEEE
Q psy5016         314 DVEYEFQEKMFK----DVK--------------------------NYLITPALKGLYHFKKWM-N-PKFSTTTRKVALTW  361 (485)
Q Consensus       314 ~~~YG~TEt~~~----~~~--------------------------~~~~~s~G~p~pg~~v~I-d-~~~~~~~g~~Gel~  361 (485)
                      ++.||+||++..    ...                          ...++++|+|+++++++| | ++..+++|++|||+
T Consensus       311 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~  390 (545)
T PRK07768        311 LPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIE  390 (545)
T ss_pred             cccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEE
Confidence            799999997421    000                          123568999999999999 5 46678999999999


Q ss_pred             EecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCcc
Q psy5016         362 PNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL  441 (485)
Q Consensus       362 v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~  441 (485)
                      ++|+   .++.||++...+...+   +.+| ||+|||++++|++|+++++||.+|+||++|.+|+|.|||++|.+||+|.
T Consensus       391 v~~~---~~~~gy~~~~~~~~~~---~~~g-~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~  463 (545)
T PRK07768        391 LRGE---SVTPGYLTMDGFIPAQ---DADG-WLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVR  463 (545)
T ss_pred             EccC---cccccccCCCCCcccc---cCCC-eeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccc
Confidence            9999   9999999544444333   3567 9999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeC--CCCCcEEEEEEEEcCCCC-CCHHHHHHHHHhh
Q psy5016         442 EAYAYGVPD--ERMGEEVGISIKLKENAK-LNADDIRTFCKGK  481 (485)
Q Consensus       442 ea~vv~~~~--~~~g~~~~a~vv~~~~~~-~~~~~l~~~l~~~  481 (485)
                      +++|++++.  ...++..++++...++.. ....++.+++++.
T Consensus       464 ~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~  506 (545)
T PRK07768        464 PGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHE  506 (545)
T ss_pred             cceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHH
Confidence            988887753  334455555554443221 1123455555554

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.93  E-value=1e-25  Score=233.27  Aligned_cols=214  Identities=15%  Similarity=-0.006  Sum_probs=163.8

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ......++|||||||.||.+.++|.+.............+...+...+. |++|.++..                     
T Consensus       119 ~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  198 (408)
T TIGR01733       119 PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEER  198 (408)
T ss_pred             CCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhcc
Confidence            3455677999999999999999999888777766655544322221111 444433221                     


Q ss_pred             --------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         284 --------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       284 --------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                                            -..+++|+++++++++.+.+.++.   ..+++.||+||++..
T Consensus       199 ~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~---~~i~~~YG~tE~g~~  275 (408)
T TIGR01733       199 DAALLAALIAEHPVTVLNLTPSLLALLAAALPPALASLRLVILGGEALTPALVDRWRARGPG---ARLINLYGPTETTVW  275 (408)
T ss_pred             CHHHHHHHHHHcCceEEEeCHHHHHHHHHhhhhcccCceEEEEeCccCCHHHHHHHHHhCCC---cEEEecccCCceEEE
Confidence                                                  001267999999999999998873   445799999997421


Q ss_pred             C-------ccCc--cccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc--CC--
Q psy5016         326 D-------VKNY--LITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP--DS--  389 (485)
Q Consensus       326 ~-------~~~~--~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~--~~--  389 (485)
                      .       ....  ++.++|+|+++++++| |+ +..++.|+.|||+++++   +++.||+ +++.+...|...  ..  
T Consensus       276 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~~~~~~  352 (408)
T TIGR01733       276 STATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGP---GVARGYLNRPELTAERFVPDPFAGGD  352 (408)
T ss_pred             EEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecCc---cccccccCChhhhhcceeeCCCCCCC
Confidence            1       1111  2778999999999999 55 56689999999999999   9999999 787777666211  01  


Q ss_pred             CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEE
Q psy5016         390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA  445 (485)
Q Consensus       390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~v  445 (485)
                      +.+||+|||++++|++|++++.||.+|+|+++|++|+|.+||++|.+|+.|.+|+|
T Consensus       353 ~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       353 GARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             CceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            11299999999999999999999999999999999999999999999999998875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=3.6e-25  Score=238.73  Aligned_cols=158  Identities=40%  Similarity=0.661  Sum_probs=138.6

Q ss_pred             ccCCcEEEEEcCCCc-cCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHNNR-IVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~-~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|+++++|+|+++. ++| |++|||+|+||++|.|||++|+.|.+.|..++||+||                       
T Consensus       351 ~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TG-----------------------  406 (534)
T COG0318         351 PLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG-----------------------  406 (534)
T ss_pred             cCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeec-----------------------
Confidence            999999999998865 555 9999999999999999999999999988766999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++|+||+++|+||.||+|+++|+||+|.|||.++.+||.|.+++|+|++|+..||.++++|++
T Consensus       407 --------------Dlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~  472 (534)
T COG0318         407 --------------DLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVL  472 (534)
T ss_pred             --------------ceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC--cCCCHHHHHHhhcccchhh------HhhhhhhcCCCCCCC
Q psy5016         174 KEN--AKLNAYEDKSISSDYHEFE------TMYDSIMAHPNRTTP  210 (485)
Q Consensus       174 ~~~--~~~~~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~  210 (485)
                      +++  ...+.++|.++|+.+...+      .++++++.+.++++.
T Consensus       473 ~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~  517 (534)
T COG0318         473 KPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKID  517 (534)
T ss_pred             cCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhh
Confidence            987  3458899999998743332      223455555555443

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.92  E-value=4.8e-24  Score=220.45  Aligned_cols=213  Identities=11%  Similarity=0.033  Sum_probs=157.8

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccc--cc-hhhccchhhhHh-------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYA--DK-CEKSMQGWAKTL-------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~--~~-~~pl~~~~~~~~-------------------  284 (485)
                      ..+..++|||||||.||.+.++|.....+.....+..+++..+.  .. +.|++|.++..+                   
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            33666799999999999999999988777766665555532221  12 228888766530                   


Q ss_pred             ----------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCccCc
Q psy5016         285 ----------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNY  330 (485)
Q Consensus       285 ----------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~~~  330 (485)
                                                        ..+++|+++++++++.+.+. +.   ..+++.||+||++.... ..
T Consensus       175 ~~~~l~~i~~~t~~~~~P~~l~~l~~~~~~l~slr~i~gGa~l~~~l~~~~~~~-g~---~~v~~~YG~TEt~~i~~-~~  249 (386)
T TIGR02372       175 ASGIMRHARPGDLIVGTPFIWEQLADLDYRLPGVVGVSSGAPSTAATWRCLLAA-GL---ARLLEVYGATETGGIGL-RE  249 (386)
T ss_pred             hHHHHHhhccCCEEEECcHHHHHHHhhCcCCCcceeEecCCCCCHHHHHHHHHh-cc---cchhheecccccccccc-cc
Confidence                                              00168899999999998874 31   34579999999753211 11


Q ss_pred             cccCcccccCCcEEEEcCCCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCCeEEE
Q psy5016         331 LITPALKGLYHFKKWMNPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDGYGQV  410 (485)
Q Consensus       331 ~~~s~G~p~pg~~v~Id~~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i  410 (485)
                      .+.+.|+|+|++++.+|++.        +   .|+                        .. |++|||++++|++|+|+|
T Consensus       250 ~~~~~~~~~p~~~~~~~~~~--------~---~g~------------------------~~-~~~tgD~g~~d~~G~l~i  293 (386)
T TIGR02372       250 APDDPFRLLPDLACFADTLS--------S---AGL------------------------AR-RLDLQDRLAWDKDGGFTI  293 (386)
T ss_pred             CCCCCcccCCCccccCCCcc--------C---CCc------------------------cc-eeecCceEEEcCCCcEEE
Confidence            23456788888766553210        0   122                        12 899999999999999999


Q ss_pred             EecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC--HHHHHHHHHhhCCCC
Q psy5016         411 VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN--ADDIRTFCKGKVSKF  485 (485)
Q Consensus       411 ~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~--~~~l~~~l~~~l~~y  485 (485)
                      .||+||+||++|++|+|.+||++|.+||+|.+++|+.     .++.+.++|+++++...+  .++|+++++++|++|
T Consensus       294 ~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~  365 (386)
T TIGR02372       294 LGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAELEIELRATAARHLPAP  365 (386)
T ss_pred             ecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999998852     367899999988654333  468999999999876

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1179|consensus

Probab=99.92  E-value=3.4e-24  Score=219.21  Aligned_cols=262  Identities=13%  Similarity=0.051  Sum_probs=198.5

Q ss_pred             CccccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--------------
Q psy5016         221 QSYVTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS--------------  285 (485)
Q Consensus       221 ~~~l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~--------------  285 (485)
                      ....++.+-+..+|||||||.||+.+++|........-.-..++++..+..-.. |+||..+..+.              
T Consensus       236 ~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vlr  315 (649)
T KOG1179|consen  236 RSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLR  315 (649)
T ss_pred             CCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEe
Confidence            445667778889999999999999999998777776656666788744443333 99999887621              


Q ss_pred             --------------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         286 --------------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       286 --------------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                  ++.-|..+.+++|+.|.++|+.   ..+.+.||+||
T Consensus       316 kKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~---~~IgE~YgaTE  392 (649)
T KOG1179|consen  316 KKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGI---IKIGEFYGATE  392 (649)
T ss_pred             cccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCC---CeEEEEecccc
Confidence                                                        1267788899999999999985   55689999999


Q ss_pred             CCCCC-ccCccccCcccc------c-CCcEEEEcC---------CC---CCCCCCceEEEE--ecCCCCcccccccC-cc
Q psy5016         322 KMFKD-VKNYLITPALKG------L-YHFKKWMNP---------KF---STTTRKVALTWP--NSMDSEARIYHYKK-YL  378 (485)
Q Consensus       322 t~~~~-~~~~~~~s~G~p------~-pg~~v~Id~---------~~---~~~~g~~Gel~v--~g~~~~~~~~gY~~-~~  378 (485)
                      +.... .-..+.|.+|+.      + |---++.|+         +.   .|++||+|.++-  ....|+..|.||.+ ++
T Consensus       393 gn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~  472 (649)
T KOG1179|consen  393 GNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKK  472 (649)
T ss_pred             CcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchh
Confidence            64321 112333333332      1 222233333         11   168999998774  34545577999994 66


Q ss_pred             ccccccc--ccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCC-Cc
Q psy5016         379 REEENIT--VPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GE  455 (485)
Q Consensus       379 ~~~~~~~--~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~-g~  455 (485)
                      .+++...  .+..+.-||.|||+-..|+.|++||.+|..|.+..+|+||+..|||.+|..+.++.|+.|+|+.-+.. |.
T Consensus       473 ~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGR  552 (649)
T KOG1179|consen  473 ATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGR  552 (649)
T ss_pred             hhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCc
Confidence            6665331  12333349999999999999999999999999999999999999999999999999999999987653 56


Q ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         456 EVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       456 ~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      .-+|.|+++++...+.+++-+++++.||+|
T Consensus       553 aGMAaI~~~p~~~~d~~~l~~~l~~~LP~Y  582 (649)
T KOG1179|consen  553 AGMAAIVLDPTTEKDLEKLYQHLRENLPSY  582 (649)
T ss_pred             cceEEEEecCcccchHHHHHHHHHhhCccc
Confidence            778889989988899999999999999998

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.91  E-value=2.8e-24  Score=227.00  Aligned_cols=158  Identities=32%  Similarity=0.421  Sum_probs=133.5

Q ss_pred             ccccCCcEEEEEcCCCccCCCCCceEEEEEcc--ccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcch
Q psy5016          13 TLSSSSFQAKVVDHNNRIVPFGTPGELLIRGH--CNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKP   90 (485)
Q Consensus        13 ~~~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~--~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~   90 (485)
                      ..|+||+++.|+|++|+++++|+ |+|+|+.+  +++++||+|++++.+++.+. ||.||                    
T Consensus       344 g~p~pG~~~~vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tG--------------------  401 (528)
T COG0365         344 GLPLPGYAVRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTG--------------------  401 (528)
T ss_pred             CCCCCCceeEEECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecC--------------------
Confidence            33999999999999999999999 99999986  99999999999888777533 88888                    


Q ss_pred             hhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEE
Q psy5016          91 LQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  170 (485)
Q Consensus        91 ~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  170 (485)
                                       |.+++||||+++|+||.||+||+.|.+|.|.|||++|.+||.|.||+|+|+||+..|+.+.+|
T Consensus       402 -----------------D~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~af  464 (528)
T COG0365         402 -----------------DWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAF  464 (528)
T ss_pred             -----------------ceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEE
Confidence                             999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCcCCC--HHHHHHhhcccchhh------HhhhhhhcCCCCCC
Q psy5016         171 IKLKENAKLN--AYEDKSISSDYHEFE------TMYDSIMAHPNRTT  209 (485)
Q Consensus       171 ~~~~~~~~~~--~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l  209 (485)
                      |+++++...+  .++|++++++...+.      .++++|+++.++++
T Consensus       465 VvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI  511 (528)
T COG0365         465 VVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKI  511 (528)
T ss_pred             EEecCCCChHHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccH
Confidence            9999987655  234445554333223      23445555555544

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=1.1e-24  Score=214.22  Aligned_cols=159  Identities=31%  Similarity=0.439  Sum_probs=143.6

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      -+|.=+++|+|++|++|++|++|+|..|||..++||++.|+.+...|..+|||+||                        
T Consensus       364 lsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsG------------------------  419 (542)
T COG1021         364 LSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSG------------------------  419 (542)
T ss_pred             CCCcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecC------------------------
Confidence            45778999999999999999999999999999999999999999999999999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+.++++|||+.|.||.||+|+++||+|..+|||+.|..||.|.+|++++.+|+-.||+.++||+.+
T Consensus       420 -------------D~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~  486 (542)
T COG1021         420 -------------DLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVK  486 (542)
T ss_pred             -------------ceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEec
Confidence                         9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcCCCHHHHHHhhcccchhh-------HhhhhhhcCCCCCCCc
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE-------TMYDSIMAHPNRTTPY  211 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~-------~~~~~I~~~~n~~l~~  211 (485)
                      +. ..+..+++++|++.+...       +.++.++.++-+++++
T Consensus       487 ~~-~~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdK  529 (542)
T COG1021         487 EP-PLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDK  529 (542)
T ss_pred             CC-CCCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccH
Confidence            76 488999999999887654       2344444444444443

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.91  E-value=2e-24  Score=238.85  Aligned_cols=199  Identities=17%  Similarity=0.233  Sum_probs=156.1

Q ss_pred             CcCcc--ccCCcEEEEEc-CC--CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHH
Q psy5016          10 QFSTL--SSSSFQAKVVD-HN--NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI   84 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d-~~--~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~   84 (485)
                      ..+++  |+|+++++|+| ++  +++++.|++|||+|+||++|.|||++|++|+++|. ||||+||              
T Consensus       437 ~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TG--------------  501 (666)
T PLN02614        437 MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTG--------------  501 (666)
T ss_pred             cCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhc-cCCcccc--------------
Confidence            34666  99999999998 43  47899999999999999999999999999999995 8999999              


Q ss_pred             hhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEe-CcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC
Q psy5016          85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  163 (485)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~-~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~  163 (485)
                                             |+|++|+||+++|+||.||+||+ +|+||+|.|||++|.+||.|.+++|+|..... 
T Consensus       502 -----------------------Dlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~-  557 (666)
T PLN02614        502 -----------------------DVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES-  557 (666)
T ss_pred             -----------------------eEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc-
Confidence                                   99999999999999999999994 79999999999999999999999999975433 


Q ss_pred             CceEEEEEEEcCCcCCCHHHHHHhhcccch-------------hhHhhhhhhcCC-CCCCCccccc-ccCCCCccccccC
Q psy5016         164 GEEVGISIKLKENAKLNAYEDKSISSDYHE-------------FETMYDSIMAHP-NRTTPYYQWW-SYDPNQSYVTHDN  228 (485)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~~~I~~~~-n~~l~~~~~i-~~~~~~~~l~~~~  228 (485)
                        .++++|++++      +.+.+|+.+++.             ...+..++.+.. +..++.+..+ ++.+....++.++
T Consensus       558 --~l~alvv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~n  629 (666)
T PLN02614        558 --FLVAIANPNQ------QILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMER  629 (666)
T ss_pred             --eEEEEEeCCH------HHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcC
Confidence              4778887643      444444443322             222233333332 2345555555 7888889999999


Q ss_pred             CcceeeccccccCC-cEEEecccchhhHHHhhhc
Q psy5016         229 GFPVDYNRALYSLK-MSSLLPHNFSAEVEAHYNQ  261 (485)
Q Consensus       229 gl~v~~tsgTtg~p-K~vvls~~~~~~~~~~~~~  261 (485)
                      |++      |...+ |+..+...|.......|.+
T Consensus       630 g~l------Tpt~K~kR~~i~~~y~~~i~~ly~~  657 (666)
T PLN02614        630 DLL------TPTFKKKRPQLLKYYQSVIDEMYKT  657 (666)
T ss_pred             CcC------CHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            988      44444 7777778887777777764

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.90  E-value=2.7e-23  Score=229.17  Aligned_cols=146  Identities=21%  Similarity=0.265  Sum_probs=128.0

Q ss_pred             Ccc--ccCCcEEEEEcCCCccCCCCCceEEEEEcc---ccccccCCCcccccccccC-CCceecCcccccchhhhHHHHh
Q psy5016          12 STL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGH---CNMLGYWEDEQKTKETIGP-DRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus        12 ~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~~~-~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      +++  |+|+++++|+|++|++++.|+.|||+|++|   +++.|||++++.+++.|.. +|||+||               
T Consensus       433 ~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TG---------------  497 (647)
T PTZ00237        433 NATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSG---------------  497 (647)
T ss_pred             CCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECC---------------
Confidence            555  999999999999999999999999999985   7899999999999887753 7899999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  165 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~  165 (485)
                                            |++++|+||+++|+||.||+||++|+||+|.|||++|.+||.|.+++|+|++++..|+
T Consensus       498 ----------------------Dlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~  555 (647)
T PTZ00237        498 ----------------------DLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYN  555 (647)
T ss_pred             ----------------------cEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCC
Confidence                                  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEcCCc---CCCH----HHHHHhhcccchh
Q psy5016         166 EVGISIKLKENA---KLNA----YEDKSISSDYHEF  194 (485)
Q Consensus       166 ~~~~~~~~~~~~---~~~~----~~l~~~l~~~~~~  194 (485)
                      .+.++|+++++.   ..+.    ++|+++++++...
T Consensus       556 ~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~  591 (647)
T PTZ00237        556 VPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIES  591 (647)
T ss_pred             EEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCc
Confidence            999999998542   2333    3445555544333

>PLN02654 acetate-CoA ligase

Probab=99.90  E-value=2.4e-23  Score=230.36  Aligned_cols=165  Identities=18%  Similarity=0.175  Sum_probs=139.8

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc--cccccccCCCccccccccc--CCCceecCcccccchhhhHHH
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIG--PDRWLRTGRYKKTSFLYSAMA   83 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~tg~~~~~~~~~~~~~   83 (485)
                      .++++  |+||++++|+|++|++++.++.|||+|++  |++++|||++++++++++.  .+|||+||             
T Consensus       452 ~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG-------------  518 (666)
T PLN02654        452 KPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSG-------------  518 (666)
T ss_pred             CCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeC-------------
Confidence            44555  99999999999999999999999999998  7899999999998877653  27899999             


Q ss_pred             HhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC
Q psy5016          84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  163 (485)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~  163 (485)
                                              |++++|+||+++|+||.||+||++|+||+|.|||++|.+||.|.+++|+|++++..
T Consensus       519 ------------------------D~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~  574 (666)
T PLN02654        519 ------------------------DGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVK  574 (666)
T ss_pred             ------------------------ceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCC
Confidence                                    99999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEcCCcCCCH---HHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         164 GEEVGISIKLKENAKLNA---YEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      |+.+.++|+++++...+.   ++|+++++++...+..      .++++++.++++..
T Consensus       575 ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r  631 (666)
T PLN02654        575 GQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMR  631 (666)
T ss_pred             CeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchH
Confidence            999999999998765543   3677777766444332      34455555555443

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.90  E-value=1.2e-23  Score=232.28  Aligned_cols=183  Identities=21%  Similarity=0.280  Sum_probs=140.6

Q ss_pred             CCcCcc--ccCCcEEEEEcCC-Cc---cCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHH
Q psy5016           9 LQFSTL--SSSSFQAKVVDHN-NR---IVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus         9 ~~~~~~--~~~~~~~~i~d~~-~~---~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~   82 (485)
                      ...+++  |+|+++++|+|.+ +.   ...++..|||+|+||++|.|||++++.|+++|..||||+||            
T Consensus       425 ~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TG------------  492 (651)
T PLN02736        425 NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTG------------  492 (651)
T ss_pred             CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeecc------------
Confidence            345566  9999999999843 32   22334579999999999999999999999999889999999            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEe-CcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~-~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                               |+|++++||+++|+||.||+||+ +|+||+|.|||++|.+||.|.+|+|+|.   
T Consensus       493 -------------------------Dlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---  544 (651)
T PLN02736        493 -------------------------DIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---  544 (651)
T ss_pred             -------------------------ceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---
Confidence                                     99999999999999999999996 7999999999999999999999999983   


Q ss_pred             CCCceEEEEEEEcCCc--------CCCHHHHHHhhcccchhhHhhhhhhcC-CCCCCCccccc-ccCCCCccccccCCcc
Q psy5016         162 RMGEEVGISIKLKENA--------KLNAYEDKSISSDYHEFETMYDSIMAH-PNRTTPYYQWW-SYDPNQSYVTHDNGFP  231 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~I~~~-~n~~l~~~~~i-~~~~~~~~l~~~~gl~  231 (485)
                      ..++.++++|+++++.        ..+..++.++|+.......+...+... -+..+..++.+ ++.+..+.++.++|++
T Consensus       545 ~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  624 (651)
T PLN02736        545 SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLL  624 (651)
T ss_pred             CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcC
Confidence            3467899999986531        122345555555433333333333322 12235555555 7777888888888887

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.90  E-value=4.3e-23  Score=223.76  Aligned_cols=148  Identities=32%  Similarity=0.501  Sum_probs=136.4

Q ss_pred             cCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhh
Q psy5016          11 FSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK   87 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~   87 (485)
                      .+++  |+|+++++|+| ++|++++.|++|||+|+|++++.|||++++.|.+.|..++||+||                 
T Consensus       373 ~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TG-----------------  435 (560)
T PLN02574        373 YSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG-----------------  435 (560)
T ss_pred             CCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccc-----------------
Confidence            3445  99999999999 679999999999999999999999999999999998889999999                 


Q ss_pred             cchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          88 LKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                          |++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.+
T Consensus       436 --------------------Dlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~  495 (560)
T PLN02574        436 --------------------DIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIP  495 (560)
T ss_pred             --------------------eEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcce
Confidence                                999999999999999999999999999999999999999999999999999998889999


Q ss_pred             EEEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         168 GISIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      .++|+.+++...+.+++.++++++...+
T Consensus       496 ~a~v~~~~~~~~~~~~l~~~~~~~l~~~  523 (560)
T PLN02574        496 VAFVVRRQGSTLSQEAVINYVAKQVAPY  523 (560)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHhccCc
Confidence            9999988877778888988887765444

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.89  E-value=1.6e-23  Score=231.42  Aligned_cols=198  Identities=14%  Similarity=0.227  Sum_probs=152.1

Q ss_pred             cCcc--ccCCcEEEEEc--CCC-ccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016          11 FSTL--SSSSFQAKVVD--HNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d--~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      .+++  |+|+++++|+|  ++| ..++.+..|||+|+||++|.|||++|++|+++|. ||||+||               
T Consensus       435 ~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TG---------------  498 (660)
T PLN02861        435 VGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHTG---------------  498 (660)
T ss_pred             CCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh-ccCcccC---------------
Confidence            4566  99999999998  445 4455677899999999999999999999999995 8999999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEe-CcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~-~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                            |+|++|+||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+.   +
T Consensus       499 ----------------------Dlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~  553 (660)
T PLN02861        499 ----------------------DIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---E  553 (660)
T ss_pred             ----------------------ceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---c
Confidence                                  99999999999999999999995 899999999999999999999999999863   3


Q ss_pred             ceEEEEEEEcCCcCCCHHHHHHhhcccch-------------hhHhhhhhhcCCCC-CCCccccc-ccCCCCccccccCC
Q psy5016         165 EEVGISIKLKENAKLNAYEDKSISSDYHE-------------FETMYDSIMAHPNR-TTPYYQWW-SYDPNQSYVTHDNG  229 (485)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~~~I~~~~n~-~l~~~~~i-~~~~~~~~l~~~~g  229 (485)
                      +.++++|++.      .+++.+++.+++.             ...+.+++.+.... .+..+..+ .+.+..+.++.++|
T Consensus       554 ~~~~A~vv~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng  627 (660)
T PLN02861        554 SFLVAVVVPD------RQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERD  627 (660)
T ss_pred             ceeEEEEEcC------HHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccC
Confidence            5688888764      4666777665532             11223333332111 24444444 66666788899999


Q ss_pred             cceeeccccccCC-cEEEecccchhhHHHhhhc
Q psy5016         230 FPVDYNRALYSLK-MSSLLPHNFSAEVEAHYNQ  261 (485)
Q Consensus       230 l~v~~tsgTtg~p-K~vvls~~~~~~~~~~~~~  261 (485)
                      ++      |...+ |+..+...|.......|.+
T Consensus       628 ~l------T~t~K~~R~~i~~~y~~~I~~lY~~  654 (660)
T PLN02861        628 LI------TPTFKLKRPQLLKYYKDCIDQLYSE  654 (660)
T ss_pred             cC------CHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            87      33343 6666677777666666654

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.89  E-value=1.3e-22  Score=222.81  Aligned_cols=163  Identities=22%  Similarity=0.248  Sum_probs=138.6

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCC-CCCceEEEEEc--cccccccCCCccccccccc--CCCceecCcccccchhhhHH
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVP-FGTPGELLIRG--HCNMLGYWEDEQKTKETIG--PDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~-~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~tg~~~~~~~~~~~~   82 (485)
                      .++++  |+|+++++|+|++|++++ .|+.|||+|++  |++++|||++++.+.+.+.  .++||+||            
T Consensus       413 ~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG------------  480 (625)
T TIGR02188       413 KPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTG------------  480 (625)
T ss_pred             CCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECC------------
Confidence            34555  999999999999999999 99999999999  6899999999988877664  37899999            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  162 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~  162 (485)
                                               |++++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++++++.
T Consensus       481 -------------------------Dl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~  535 (625)
T TIGR02188       481 -------------------------DGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDI  535 (625)
T ss_pred             -------------------------ceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCC
Confidence                                     9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEEcCCcCCCH---HHHHHhhcccchhhHh------hhhhhcCCCCCC
Q psy5016         163 MGEEVGISIKLKENAKLNA---YEDKSISSDYHEFETM------YDSIMAHPNRTT  209 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~------~~~I~~~~n~~l  209 (485)
                      .|+.++++|+++++...+.   ++|+++|+++......      .++++++.++++
T Consensus       536 ~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi  591 (625)
T TIGR02188       536 KGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKI  591 (625)
T ss_pred             CCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccc
Confidence            9999999999988765543   5777777765444322      344444444444

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.89  E-value=2.1e-22  Score=218.34  Aligned_cols=144  Identities=35%  Similarity=0.616  Sum_probs=135.8

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++++++|.|+.|||+|+|+.++.|||++++.|++.|.+++||+||                        
T Consensus       383 ~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG------------------------  438 (562)
T PRK05677        383 PVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG------------------------  438 (562)
T ss_pred             cCCCCEEEEECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCccccc------------------------
Confidence            99999999999999999999999999999999999999999999999889999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|++++.||.+|+|+++|++|+|.|||+.|.+||.|.+++|++++++..++.+.++++++
T Consensus       439 -------------Dlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~  505 (562)
T PRK05677        439 -------------DIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVK  505 (562)
T ss_pred             -------------ceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999998899999999988


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++...+.++++++++++...+
T Consensus       506 ~~~~~~~~~l~~~~~~~l~~~  526 (562)
T PRK05677        506 PGETLTKEQVMEHMRANLTGY  526 (562)
T ss_pred             CCCCCCHHHHHHHHHHhhhhc
Confidence            776778889999988765444

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.89  E-value=2.1e-22  Score=221.71  Aligned_cols=148  Identities=25%  Similarity=0.272  Sum_probs=131.9

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc--cccccccCCCccccccccc--CCCceecCcccccchhhhHHHH
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIG--PDRWLRTGRYKKTSFLYSAMAI   84 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~tg~~~~~~~~~~~~~~   84 (485)
                      .+++  |+|+++++|+|++|++++.|+.|||+|+|  |++++|||++++.+.+.+.  .++||+||              
T Consensus       423 ~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG--------------  488 (637)
T PRK00174        423 PGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG--------------  488 (637)
T ss_pred             CCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC--------------
Confidence            3445  99999999999999999999999999999  6999999999988777652  37899999              


Q ss_pred             hhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                             |++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..|
T Consensus       489 -----------------------Dl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g  545 (637)
T PRK00174        489 -----------------------DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKG  545 (637)
T ss_pred             -----------------------ceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCC
Confidence                                   999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEcCCcCCC---HHHHHHhhcccchhh
Q psy5016         165 EEVGISIKLKENAKLN---AYEDKSISSDYHEFE  195 (485)
Q Consensus       165 ~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~  195 (485)
                      +.++++|+++++...+   .++|+++|+++...+
T Consensus       546 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~  579 (637)
T PRK00174        546 QGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPI  579 (637)
T ss_pred             eEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCc
Confidence            9999999998876544   467777777654433

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.89  E-value=3.5e-23  Score=215.29  Aligned_cols=185  Identities=15%  Similarity=-0.029  Sum_probs=143.8

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhh--cccCCCcccccchhhccchhhh-H-------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYN--QKSDIDWEYADKCEKSMQGWAK-T-------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~--~~~~~~~~~~~~~~pl~~~~~~-~-------------------  283 (485)
                      ....+.++|||||||.||.+.++|.+.......+.  ...++. .....+.|++|.++. .                   
T Consensus       154 ~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~-d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  232 (417)
T PF00501_consen  154 PDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG-DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFD  232 (417)
T ss_dssp             TTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT-TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHH
T ss_pred             ccceeEeeccccccccccccccccccccccccccccccccccC-ceEEeecccccccccccccccccccccccccccccc
Confidence            35557789999999999999999988877766543  222222 111122277776665 2                   


Q ss_pred             -----------------------------h----h--------------hhccCCCCCHHHHHHHHhhhhhcccCccccc
Q psy5016         284 -----------------------------L----S--------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVE  316 (485)
Q Consensus       284 -----------------------------~----~--------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~  316 (485)
                                                   +    .              .+++|+++++++.+.+.+.++.   ..+++.
T Consensus       233 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~---~~i~~~  309 (417)
T PF00501_consen  233 LFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGN---APIINL  309 (417)
T ss_dssp             HHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTT---SEEEEE
T ss_pred             ccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhcccccccccc---ccceec
Confidence                                         0    0              0179999999999999999984   466899


Q ss_pred             cccCCCCCCC------ccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016         317 YEFQEKMFKD------VKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV  386 (485)
Q Consensus       317 YG~TEt~~~~------~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~  386 (485)
                      ||+||++...      .....++++|+|+|+++++| |+  +..+++|+.|||+|+|+   +++.||+ +++.+.+.|  
T Consensus       310 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~---~~~~gy~~~~~~~~~~~--  384 (417)
T PF00501_consen  310 YGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGP---NVFSGYYNDPELTAEAF--  384 (417)
T ss_dssp             EEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEEST---TSBSEETTBHHHHHHHE--
T ss_pred             ccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCC---ccceeeecccccccccc--
Confidence            9999976432      22246789999999999999 66  56689999999999999   9999999 778888888  


Q ss_pred             cCCCCCeEecCceEEEecCCeEEEEecCCCeEEEC
Q psy5016         387 PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRG  421 (485)
Q Consensus       387 ~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~  421 (485)
                       .++| ||+|||+|++|+||+++++||.||+||++
T Consensus       385 -~~~~-~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  385 -IDDG-WYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             -ETTS-EEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             -cccc-ceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence             3457 99999999999999999999999999975

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.88  E-value=2.6e-22  Score=221.61  Aligned_cols=162  Identities=18%  Similarity=0.179  Sum_probs=134.0

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEcc--ccccccCCCccccc--cc-cc-CCCceecCcccccchhhhHH
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGH--CNMLGYWEDEQKTK--ET-IG-PDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~--~~~~gy~~~~~~~~--~~-~~-~~~~~~tg~~~~~~~~~~~~   82 (485)
                      .+++  |.||++++|+|++|+++ .|+.|||+|+||  +++.|||+|++.++  +. +. .++||+||            
T Consensus       438 ~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tG------------  504 (652)
T TIGR01217       438 IGEIQAPGLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHG------------  504 (652)
T ss_pred             CCccCCCcCCCceEEECCCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcC------------
Confidence            3554  99999999999999998 599999999995  68999999998654  11 21 25778888            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  162 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~  162 (485)
                                               |++++|+||+++|+||.||+||++|+||+|.|||++|.+||.|.+++|+|++++.
T Consensus       505 -------------------------Dlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~  559 (652)
T TIGR01217       505 -------------------------DWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPD  559 (652)
T ss_pred             -------------------------CcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCC
Confidence                                     9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEEcCCcCCCH---HHHHHhhcccchhhHh------hhhhhcCCCCCCC
Q psy5016         163 MGEEVGISIKLKENAKLNA---YEDKSISSDYHEFETM------YDSIMAHPNRTTP  210 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~  210 (485)
                      .|+.++++|+++++...+.   ++|+++|+++...+..      .++++++.++++.
T Consensus       560 ~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~  616 (652)
T TIGR01217       560 GGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRV  616 (652)
T ss_pred             CCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccCh
Confidence            9999999999998765554   4777777765444322      3445555555543

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.88  E-value=4.1e-22  Score=219.12  Aligned_cols=149  Identities=23%  Similarity=0.252  Sum_probs=129.0

Q ss_pred             CcCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEcc---ccccccCCCcccccccc---cCCCceecCcccccchhhh
Q psy5016          10 QFSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGH---CNMLGYWEDEQKTKETI---GPDRWLRTGRYKKTSFLYS   80 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~---~~~~~~~tg~~~~~~~~~~   80 (485)
                      ..+++  |+|+++++|+|+ +|++++.|+.|||+|+||   +.+.|||++++.+.+.+   .+++||+||          
T Consensus       408 ~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TG----------  477 (628)
T TIGR02316       408 KLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSF----------  477 (628)
T ss_pred             CCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECC----------
Confidence            34555  999999999998 699999999999999998   57899999988776654   247799999          


Q ss_pred             HHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeC
Q psy5016          81 AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD  160 (485)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~  160 (485)
                                                 |++++|+||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|+++++
T Consensus       478 ---------------------------D~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d  530 (628)
T TIGR02316       478 ---------------------------DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHD  530 (628)
T ss_pred             ---------------------------ceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeec
Confidence                                       99999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEEEcCCcCC--------CHHHHHHhhcccchhh
Q psy5016         161 ERMGEEVGISIKLKENAKL--------NAYEDKSISSDYHEFE  195 (485)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~~~~~  195 (485)
                      +..|+.+.++|+++++...        ..++|+++++++...+
T Consensus       531 ~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~  573 (628)
T TIGR02316       531 ELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAV  573 (628)
T ss_pred             CCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCC
Confidence            9999999999998876432        2356777777665443

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.88  E-value=4.1e-22  Score=213.19  Aligned_cols=143  Identities=20%  Similarity=0.130  Sum_probs=119.4

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCC--CceEEEEEcccc--ccccCCCcccccccccCC--------CceecCcccccc
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFG--TPGELLIRGHCN--MLGYWEDEQKTKETIGPD--------RWLRTGRYKKTS   76 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g--~~Gel~i~~~~~--~~gy~~~~~~~~~~~~~~--------~~~~tg~~~~~~   76 (485)
                      .+++  |.|+++++|+|++|++++.|  ++|||+|+|+.+  +.|||+++. ++..+...        +||+||      
T Consensus       290 ~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TG------  362 (499)
T PLN03051        290 PGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHG------  362 (499)
T ss_pred             CccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecC------
Confidence            3455  99999999999999999998  489999999976  689998753 33222111        145666      


Q ss_pred             hhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHc-CCCcceEEE
Q psy5016          77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYA  155 (485)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~-~~~v~~~~~  155 (485)
                                                     |++++|+||+++|+||.||+||++|+||+|.|||++|.+ ||+|.+|+|
T Consensus       363 -------------------------------Dlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aav  411 (499)
T PLN03051        363 -------------------------------DIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAA  411 (499)
T ss_pred             -------------------------------CeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEE
Confidence                                           999999999999999999999999999999999999986 999999999


Q ss_pred             EEeeCCCCC-ceEEEEE---EEcCCc-CCCHHHHHHhhccc
Q psy5016         156 YGVPDERMG-EEVGISI---KLKENA-KLNAYEDKSISSDY  191 (485)
Q Consensus       156 ~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~l~~~l~~~  191 (485)
                      ++++++..| +.+.++|   +++++. ..+.++|+++|+++
T Consensus       412 vg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~  452 (499)
T PLN03051        412 VGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEA  452 (499)
T ss_pred             EEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHH
Confidence            999999988 6888998   777764 46678888777543

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=2.7e-22  Score=220.67  Aligned_cols=141  Identities=30%  Similarity=0.403  Sum_probs=126.9

Q ss_pred             ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccC-----------------CCceecCcccccc
Q psy5016          15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP-----------------DRWLRTGRYKKTS   76 (485)
Q Consensus        15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~-----------------~~~~~tg~~~~~~   76 (485)
                      |.|++.++|+|+ +|++++.|++|||+|+|+++|.|||++++.|+++|..                 ++||+||      
T Consensus       396 ~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TG------  469 (631)
T PRK07769        396 VGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTG------  469 (631)
T ss_pred             cCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeecc------
Confidence            889999999995 6899999999999999999999999999999988842                 4899999      


Q ss_pred             hhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHc-CCCcce--E
Q psy5016          77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--A  153 (485)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~-~~~v~~--~  153 (485)
                                                     |+|+++ ||+++|+||.||+||++|+||+|.|||++|.+ ||.|.+  +
T Consensus       470 -------------------------------Dlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~  517 (631)
T PRK07769        470 -------------------------------DYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYV  517 (631)
T ss_pred             -------------------------------ccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcE
Confidence                                           999996 99999999999999999999999999999996 899998  9


Q ss_pred             EEEEeeC-------------------CCCCceEEEEEEEcCCc-CCCHHHHHHhhcccch
Q psy5016         154 YAYGVPD-------------------ERMGEEVGISIKLKENA-KLNAYEDKSISSDYHE  193 (485)
Q Consensus       154 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~  193 (485)
                      +|+++++                   +..|+.++++|+++++. ..+.++|.++|+++..
T Consensus       518 av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~  577 (631)
T PRK07769        518 AAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIA  577 (631)
T ss_pred             EEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHHHHH
Confidence            9999998                   55788999999998873 5677889988887644

>PRK07529 AMP-binding domain protein; Validated

Probab=99.88  E-value=6.2e-22  Score=217.85  Aligned_cols=145  Identities=35%  Similarity=0.450  Sum_probs=131.4

Q ss_pred             CcCcc--ccCCcEEEEE--cCCC---ccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHH
Q psy5016          10 QFSTL--SSSSFQAKVV--DHNN---RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~--d~~~---~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~   82 (485)
                      ..+++  |+|+++++|+  |++|   ++++.|+.|||+|+|+++|.||++++. +.+.+..++||+||            
T Consensus       384 ~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TG------------  450 (632)
T PRK07529        384 RIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTG------------  450 (632)
T ss_pred             cCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcC------------
Confidence            34555  9999999985  7777   899999999999999999999998764 55566568999999            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  162 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~  162 (485)
                                               |++++++||++++.||.||+||++|++|+|.|||+.|.+||+|.+++|++.+++.
T Consensus       451 -------------------------Dlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~  505 (632)
T PRK07529        451 -------------------------DLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAH  505 (632)
T ss_pred             -------------------------cEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCC
Confidence                                     9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEEcCCcCCCHHHHHHhhcccc
Q psy5016         163 MGEEVGISIKLKENAKLNAYEDKSISSDYH  192 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  192 (485)
                      .|+.++++|++.++...+.++++++|+++.
T Consensus       506 ~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l  535 (632)
T PRK07529        506 AGELPVAYVQLKPGASATEAELLAFARDHI  535 (632)
T ss_pred             CCceeEEEEEEcCCCCCCHHHHHHHHHHhc
Confidence            999999999999888888899999987664

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.87  E-value=1.2e-22  Score=217.56  Aligned_cols=199  Identities=26%  Similarity=0.385  Sum_probs=148.1

Q ss_pred             CCCCCcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHH
Q psy5016           6 PTDLQFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMA   83 (485)
Q Consensus         6 ~~~~~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~   83 (485)
                      |.+...+++  |+|+++++|+|+          |||+||||.+|.|||++|++|+++|++||||+||             
T Consensus       398 ~~~~~~gtvG~p~p~~evKI~d~----------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TG-------------  454 (613)
T COG1022         398 PDRFVLGTVGKPLPGIEVKIADD----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG-------------  454 (613)
T ss_pred             ccCcccCCcCCcCCCceEEEccC----------ceEEEecchhcchhcCChHHHhhhccccCCcccC-------------
Confidence            567778888  999999999996          9999999999999999999999999999999999             


Q ss_pred             HhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEE-eCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016          84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  162 (485)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~-~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~  162 (485)
                                              |+|.++++|+++++||+||+|+ .+|+||.|+.||..+..+|.|.+++|+| .+..
T Consensus       455 ------------------------Dlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~  509 (613)
T COG1022         455 ------------------------DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKK  509 (613)
T ss_pred             ------------------------ceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCc
Confidence                                    9999999999999999999999 8999999999999999999999999999 4444


Q ss_pred             CCceEEEEEEEcCCcCCCH---------HHHHHhhcccchhhHhhhhhhcCCCCCCCcccccccCCCCccccccCCccee
Q psy5016         163 MGEEVGISIKLKENAKLNA---------YEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVD  233 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~I~~~~n~~l~~~~~i~~~~~~~~l~~~~gl~v~  233 (485)
                         .+++.|+++.+.-..-         ....+.+++..........+...........+..++......++..++..  
T Consensus       510 ---~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~--  584 (613)
T COG1022         510 ---FLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGEL--  584 (613)
T ss_pred             ---ceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCcc--
Confidence               4888888764321100         01222333333333444444444444434444436666677777777766  


Q ss_pred             eccccccCC-cEEEecccchhhHHHhhhc
Q psy5016         234 YNRALYSLK-MSSLLPHNFSAEVEAHYNQ  261 (485)
Q Consensus       234 ~tsgTtg~p-K~vvls~~~~~~~~~~~~~  261 (485)
                          |...+ |+..+..++..+....+.+
T Consensus       585 ----t~t~klkR~~i~~~~~~~i~~~y~~  609 (613)
T COG1022         585 ----TPTLKLKRHVILDRYKDEIEAVYSR  609 (613)
T ss_pred             ----ccchhhhHHHHHHhhhhHHHHHhhc
Confidence                33333 5555566666555555543

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.87  E-value=2.1e-22  Score=223.74  Aligned_cols=195  Identities=17%  Similarity=0.210  Sum_probs=142.6

Q ss_pred             CCcCcc--ccCCcEEEEEc-CCCccC---CCCCceEEEEEccccccccCCCccccccccc--CCC--ceecCcccccchh
Q psy5016           9 LQFSTL--SSSSFQAKVVD-HNNRIV---PFGTPGELLIRGHCNMLGYWEDEQKTKETIG--PDR--WLRTGRYKKTSFL   78 (485)
Q Consensus         9 ~~~~~~--~~~~~~~~i~d-~~~~~~---~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~--~~~--~~~tg~~~~~~~~   78 (485)
                      ...+++  |+|+++++|+| +++...   .++..|||+|+||++|.|||++|++|+++|.  ++|  ||+||        
T Consensus       469 ~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TG--------  540 (696)
T PLN02387        469 TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG--------  540 (696)
T ss_pred             CCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecC--------
Confidence            345666  99999999998 554332   2445799999999999999999999999983  345  99999        


Q ss_pred             hhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEe-CcEEeChHHHHHHHHcCCCcceEEEEE
Q psy5016          79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYG  157 (485)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~-~g~~~~~~~ie~~~~~~~~v~~~~~~~  157 (485)
                                                   |+|++|+||+++|+||.||+||. +|++|+|.|||++|.+||.|.+++|+|
T Consensus       541 -----------------------------Dig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g  591 (696)
T PLN02387        541 -----------------------------DIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHA  591 (696)
T ss_pred             -----------------------------ceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEe
Confidence                                         99999999999999999999996 799999999999999999999999999


Q ss_pred             eeCCCCCceEEEEEEEcCCcCCCHHHHHHhhc--------------ccchhhHhhhhhhcC-CCCCCCccccc-ccCCCC
Q psy5016         158 VPDERMGEEVGISIKLKENAKLNAYEDKSISS--------------DYHEFETMYDSIMAH-PNRTTPYYQWW-SYDPNQ  221 (485)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--------------~~~~~~~~~~~I~~~-~n~~l~~~~~i-~~~~~~  221 (485)
                      .+...   .++++|++++      +.+..++.              +......+...+.+. .+..+..+..+ ++.+..
T Consensus       592 ~~~~~---~~~a~vv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~  662 (696)
T PLN02387        592 DPFHS---YCVALVVPSQ------QALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLP  662 (696)
T ss_pred             cCCcc---eEEEEEEeCH------HHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEEC
Confidence            76433   4778887653      33333333              222223333344332 12334444444 777888


Q ss_pred             ccccccCCcceeeccccccCC-cEEEecccchhhH
Q psy5016         222 SYVTHDNGFPVDYNRALYSLK-MSSLLPHNFSAEV  255 (485)
Q Consensus       222 ~~l~~~~gl~v~~tsgTtg~p-K~vvls~~~~~~~  255 (485)
                      +.++..+|++      |...+ |+..+...|....
T Consensus       663 ~~~t~~~g~l------T~t~K~~R~~i~~~y~~~i  691 (696)
T PLN02387        663 EPWTPESGLV------TAALKLKREQIRKKFKDDL  691 (696)
T ss_pred             CCCCCCCCcC------ChhhhhhhHHHHHHHHHHH
Confidence            8999999987      34444 4444455554433

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.1e-21  Score=208.78  Aligned_cols=145  Identities=37%  Similarity=0.564  Sum_probs=133.7

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhc
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      .+++  |+|++.++|+|+++++++.|++|||+|+|++++.|||++++.+++.+..++||+||                  
T Consensus       305 ~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TG------------------  366 (488)
T PRK09088        305 AGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTG------------------  366 (488)
T ss_pred             CCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeec------------------
Confidence            3455  99999999999999999999999999999999999999999999888889999999                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (485)
                                         |+++++++|++++.||.||+|+++|.+|+|.+||++|..||.|.++++++++++..|+...
T Consensus       367 -------------------Dl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~  427 (488)
T PRK09088        367 -------------------DIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGY  427 (488)
T ss_pred             -------------------ceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeE
Confidence                               9999999999999999999999999999999999999999999999999999888888888


Q ss_pred             EEEEEcCCcCCCHHHHHHhhcccc
Q psy5016         169 ISIKLKENAKLNAYEDKSISSDYH  192 (485)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~l~~~~  192 (485)
                      ++|+++++...+.+++.++|+++.
T Consensus       428 ~~v~~~~~~~~~~~~l~~~~~~~l  451 (488)
T PRK09088        428 LAIVPADGAPLDLERIRSHLSTRL  451 (488)
T ss_pred             EEEEECCCCCCCHHHHHHHHHhhC
Confidence            999888776667788888887643

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.87  E-value=4.6e-22  Score=221.30  Aligned_cols=136  Identities=19%  Similarity=0.248  Sum_probs=115.1

Q ss_pred             CCCcCcc--cc-CCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHH
Q psy5016           8 DLQFSTL--SS-SSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMA   83 (485)
Q Consensus         8 ~~~~~~~--~~-~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~   83 (485)
                      +...+++  |+ |+++++|+| +++...+.+..|||+|+||++|.|||++|++|+++|..||||+||             
T Consensus       509 ~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TG-------------  575 (746)
T PTZ00342        509 DNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTG-------------  575 (746)
T ss_pred             CCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCC-------------
Confidence            3455666  87 999999998 444455556679999999999999999999999999889999999             


Q ss_pred             HhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEE-eCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016          84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  162 (485)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~-~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~  162 (485)
                                              |+|++|+||+++|+||.||+|| .+|++|+|.+||+++.+||.|.+|+|+|.... 
T Consensus       576 ------------------------Dig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~-  630 (746)
T PTZ00342        576 ------------------------DIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM-  630 (746)
T ss_pred             ------------------------cEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc-
Confidence                                    9999999999999999999999 58999999999999999999999999996322 


Q ss_pred             CCceEEEEEEEcCCcCCCHHHHHHhhc
Q psy5016         163 MGEEVGISIKLKENAKLNAYEDKSISS  189 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~~~l~  189 (485)
                        ..+.|+|+++      .+.+.++++
T Consensus       631 --~~~~Alvv~d------~~~~~~~a~  649 (746)
T PTZ00342        631 --DGPLAIISVD------KYLLFKCLK  649 (746)
T ss_pred             --cccEEEEECC------HHHHHHHHH
Confidence              2477888764      344555544

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.87  E-value=1.2e-21  Score=216.35  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=133.1

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEcc--ccccccCCCcccccc--cc-c-CCCceecCcccccchhhhH
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGH--CNMLGYWEDEQKTKE--TI-G-PDRWLRTGRYKKTSFLYSA   81 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~--~~~~gy~~~~~~~~~--~~-~-~~~~~~tg~~~~~~~~~~~   81 (485)
                      ..+++  |+||++++|+|++|+++ .|++|||+|+|+  +++.|||++++.++.  .+ . -++||+||           
T Consensus       436 ~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TG-----------  503 (655)
T PRK03584        436 YRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHG-----------  503 (655)
T ss_pred             CCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecC-----------
Confidence            34555  99999999999999999 899999999995  789999999875431  11 1 14677788           


Q ss_pred             HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                                |++++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++++++
T Consensus       504 --------------------------Dl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~  557 (655)
T PRK03584        504 --------------------------DWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWP  557 (655)
T ss_pred             --------------------------CeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcC
Confidence                                      999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceEEEEEEEcCCcCCCH---HHHHHhhcccchhhHh------hhhhhcCCCCCCC
Q psy5016         162 RMGEEVGISIKLKENAKLNA---YEDKSISSDYHEFETM------YDSIMAHPNRTTP  210 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~  210 (485)
                      ..++.+.++|+++++...+.   ++|+++|+++...+..      +++++++.++++.
T Consensus       558 ~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~  615 (655)
T PRK03584        558 DGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKV  615 (655)
T ss_pred             CCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccch
Confidence            88999999999988755543   5777777766544422      3445555555443

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.1e-21  Score=211.95  Aligned_cols=140  Identities=31%  Similarity=0.481  Sum_probs=129.8

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++|+|++|++++.|++|||+|+|+.++.||++++..  +.  .++||+||                        
T Consensus       381 ~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~~--~~g~~~TG------------------------  432 (549)
T PRK07788        381 PPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--QI--IDGLLSSG------------------------  432 (549)
T ss_pred             CCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcc--cc--cCCceecC------------------------
Confidence            999999999999999999999999999999999999998765  22  37999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.+.++|+++
T Consensus       433 -------------Dl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~  499 (549)
T PRK07788        433 -------------DVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKA  499 (549)
T ss_pred             -------------ceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++...+.++|+++|+++...+
T Consensus       500 ~~~~~~~~~l~~~~~~~l~~~  520 (549)
T PRK07788        500 PGAALDEDAIKDYVRDNLARY  520 (549)
T ss_pred             CCCCCCHHHHHHHHHHhhhcC
Confidence            887788899999998765444

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.2e-21  Score=208.45  Aligned_cols=143  Identities=36%  Similarity=0.492  Sum_probs=133.5

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++++.++.|++|||+|+|+.++.|||++++.+++.+. ++||+||                        
T Consensus       322 p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG------------------------  376 (496)
T PRK06839        322 PVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQ-DGWLCTG------------------------  376 (496)
T ss_pred             cCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHc-CCCeeec------------------------
Confidence            999999999999999999999999999999999999999999888774 8999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|++++.||.||+|+++|++|+|.+||++|.++|+|.+++|++++++..|+.++++|+++
T Consensus       377 -------------Dl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~  443 (496)
T PRK06839        377 -------------DLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKK  443 (496)
T ss_pred             -------------ceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++...+.++++++++++...+
T Consensus       444 ~~~~~~~~~l~~~~~~~l~~~  464 (496)
T PRK06839        444 SSSVLIEKDVIEHCRLFLAKY  464 (496)
T ss_pred             CCCCCCHHHHHHHHHhhCcCC
Confidence            887788888998887654443

>PLN02246 4-coumarate--CoA ligase

Probab=99.87  E-value=1.4e-21  Score=210.59  Aligned_cols=148  Identities=28%  Similarity=0.403  Sum_probs=136.0

Q ss_pred             cCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhh
Q psy5016          11 FSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK   87 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~   87 (485)
                      .+++  |+++++++|+|+ ++++++.|+.|||+|+|++++.|||+++..+++.+..++||+||                 
T Consensus       355 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TG-----------------  417 (537)
T PLN02246        355 SGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTG-----------------  417 (537)
T ss_pred             CCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeec-----------------
Confidence            3444  999999999995 68999999999999999999999999999999998889999999                 


Q ss_pred             cchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          88 LKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                          |+++++++|+++++||.||+||++|++|+|.|||+.|.+||.|.+++|++++++..++.+
T Consensus       418 --------------------D~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  477 (537)
T PLN02246        418 --------------------DIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVP  477 (537)
T ss_pred             --------------------ceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCcee
Confidence                                999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         168 GISIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +++++..++...+.++|+++|+++...+
T Consensus       478 ~~~v~~~~~~~~~~~~l~~~l~~~l~~~  505 (537)
T PLN02246        478 VAFVVRSNGSEITEDEIKQFVAKQVVFY  505 (537)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHhhCcCc
Confidence            9999988777777889999988765444

>KOG1256|consensus

Probab=99.87  E-value=2.3e-22  Score=213.28  Aligned_cols=209  Identities=20%  Similarity=0.277  Sum_probs=169.5

Q ss_pred             CCCCCcCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHH
Q psy5016           6 PTDLQFSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus         6 ~~~~~~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~   82 (485)
                      |.+...+++  |+|+++++++| ++...-+.|..|||+|||+++|.||++||++|+++++.|||++||            
T Consensus       465 ~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTG------------  532 (691)
T KOG1256|consen  465 PGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTG------------  532 (691)
T ss_pred             CCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccc------------
Confidence            334466777  99999999999 345555666689999999999999999999999999999999999            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEE-eCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~-~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                               |+|+++++|.++|.||.|+++| .+||+|.|+.||++..+.+-|.+.+|+|-...
T Consensus       533 -------------------------DiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~  587 (691)
T KOG1256|consen  533 -------------------------DIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR  587 (691)
T ss_pred             -------------------------cceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch
Confidence                                     9999999999999999999999 89999999999999999999999999997655


Q ss_pred             CCCceEEEEEEEcCCcCC-------CHHHHHHhhcccchhhHhhhhhhcCCCCCC--CcccccccCCCCccccccCCcce
Q psy5016         162 RMGEEVGISIKLKENAKL-------NAYEDKSISSDYHEFETMYDSIMAHPNRTT--PYYQWWSYDPNQSYVTHDNGFPV  232 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~I~~~~n~~l--~~~~~i~~~~~~~~l~~~~gl~v  232 (485)
                      .   .+++.|++++....       ...+..++|+........+.++++..+...  ..++.-.+.+.+..++..+|++ 
T Consensus       588 ~---~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~Fsiengll-  663 (691)
T KOG1256|consen  588 S---FLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLL-  663 (691)
T ss_pred             h---cEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCcc-
Confidence            4   48888888765322       125677889888888888899888776433  2333337888889999999988 


Q ss_pred             eeccccccCC-cEEEecccchhhHHHhhh
Q psy5016         233 DYNRALYSLK-MSSLLPHNFSAEVEAHYN  260 (485)
Q Consensus       233 ~~tsgTtg~p-K~vvls~~~~~~~~~~~~  260 (485)
                           |.-.+ |+..+...|.......|.
T Consensus       664 -----tPTlK~KR~~l~~~yk~~Id~mY~  687 (691)
T KOG1256|consen  664 -----TPTLKIKRPQLLKYYKKQIDELYK  687 (691)
T ss_pred             -----chhhhhhhHHHHHHHHHHHHHHHh
Confidence                 33344 556666666666665554

>PRK09274 peptide synthase; Provisional

Probab=99.87  E-value=7.6e-22  Score=213.35  Aligned_cols=138  Identities=17%  Similarity=0.253  Sum_probs=122.7

Q ss_pred             ccCCcEEEEEcC---------CCccCCCCCceEEEEEccccccccCCCcccccccc--cCCC--ceecCcccccchhhhH
Q psy5016          15 SSSSFQAKVVDH---------NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI--GPDR--WLRTGRYKKTSFLYSA   81 (485)
Q Consensus        15 ~~~~~~~~i~d~---------~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~--~~~~--~~~tg~~~~~~~~~~~   81 (485)
                      |+|+++++|+|+         ++++++.|++|||+|+|++++.|||++++.|...+  .+++  ||+||           
T Consensus       357 ~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TG-----------  425 (552)
T PRK09274        357 PVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMG-----------  425 (552)
T ss_pred             cCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcC-----------
Confidence            999999999984         56789999999999999999999999999888765  3355  99999           


Q ss_pred             HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                                |++++++||+++++||.||+||++|.+|+|.|||++|.+||+|.+++|++++++
T Consensus       426 --------------------------Dlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~  479 (552)
T PRK09274        426 --------------------------DLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP  479 (552)
T ss_pred             --------------------------CEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC
Confidence                                      999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCceEEEEEEEcCCcCCCHHHHHHhhcc
Q psy5016         162 RMGEEVGISIKLKENAKLNAYEDKSISSD  190 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  190 (485)
                      . ++.+.++|++.++...+.+++.+.|++
T Consensus       480 ~-~~~~~~~v~~~~~~~~~~~~l~~~l~~  507 (552)
T PRK09274        480 G-AQRPVLCVELEPGVACSKSALYQELRA  507 (552)
T ss_pred             C-CceEEEEEEccCccccchHHHhhhhHH
Confidence            4 677889999888766666666666554

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.3e-21  Score=210.71  Aligned_cols=159  Identities=33%  Similarity=0.486  Sum_probs=139.9

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      +.++++++|+|++|++++.|+.|||+|+|+.+++|||++++.+++.|. ++||+||                        
T Consensus       359 ~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~-~g~~~TG------------------------  413 (534)
T PRK05852        359 RSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT-DGWLRTG------------------------  413 (534)
T ss_pred             CCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhhc-CCCcccC------------------------
Confidence            379999999999999999999999999999999999999999998885 8899999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++|+||++++.||.+|+||++|.+|+|.+||++|..||+|.+++|++++++..++.+.++|+.+
T Consensus       414 -------------D~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~  480 (534)
T PRK05852        414 -------------DLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPR  480 (534)
T ss_pred             -------------ceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988899999999987


Q ss_pred             CCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         175 ENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      +....+.++|.++|+++...+..      .++++.+.++++..
T Consensus       481 ~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r  523 (534)
T PRK05852        481 ESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDR  523 (534)
T ss_pred             CCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccH
Confidence            76667888899998876544332      34455555554443

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.87  E-value=1.3e-21  Score=209.70  Aligned_cols=144  Identities=30%  Similarity=0.457  Sum_probs=134.8

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEc---cccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRG---HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPL   91 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~---~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~   91 (485)
                      |+++++++|+|++|++++.|+.|||+++|   ++++.|||++++.+++.+..++||+||                     
T Consensus       345 ~~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TG---------------------  403 (517)
T PRK08008        345 PGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTG---------------------  403 (517)
T ss_pred             CCCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeecc---------------------
Confidence            89999999999999999999999999997   689999999999999999889999999                     


Q ss_pred             hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016          92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  171 (485)
Q Consensus        92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (485)
                                      |++++++||+++++||.||+||++|++|+|.+||.+|..|+.|.+++|+|+++...++.+.++|
T Consensus       404 ----------------Dl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v  467 (517)
T PRK08008        404 ----------------DTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFV  467 (517)
T ss_pred             ----------------ceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEE
Confidence                            9999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             EEcCCcCCCHHHHHHhhcccchhh
Q psy5016         172 KLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       172 ~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +++++...+.++++++++++...+
T Consensus       468 ~~~~~~~~~~~~l~~~~~~~l~~~  491 (517)
T PRK08008        468 VLNEGETLSEEEFFAFCEQNMAKF  491 (517)
T ss_pred             EECCCCCCCHHHHHHHHHhhcccc
Confidence            999877778888999988664443

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.87  E-value=1.2e-21  Score=212.84  Aligned_cols=147  Identities=27%  Similarity=0.408  Sum_probs=132.0

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc--cccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      .++++  |+|+++++|+|++|.+++.|++|||+|+|  +++|+|||+++..+++.+. ++||+||               
T Consensus       374 ~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TG---------------  437 (570)
T PRK04319        374 KPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSG---------------  437 (570)
T ss_pred             CCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeC---------------
Confidence            34555  99999999999999999999999999997  8999999999999998886 8999999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  165 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~  165 (485)
                                            |+++++++|+++++||.||+|+++|++|+|.|||+.|.+||.|.+++|++++++..|+
T Consensus       438 ----------------------Dl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~  495 (570)
T PRK04319        438 ----------------------DSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGE  495 (570)
T ss_pred             ----------------------cEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCce
Confidence                                  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEcCCcCCCH---HHHHHhhcccchh
Q psy5016         166 EVGISIKLKENAKLNA---YEDKSISSDYHEF  194 (485)
Q Consensus       166 ~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~  194 (485)
                      .+.+++++.++...+.   ++|+++|+++...
T Consensus       496 ~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~  527 (570)
T PRK04319        496 IIKAFVALRPGYEPSEELKEEIRGFVKKGLGA  527 (570)
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHHHHhccc
Confidence            9999999887654332   5677777665443

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.86  E-value=1.4e-21  Score=212.01  Aligned_cols=134  Identities=31%  Similarity=0.551  Sum_probs=123.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++     +|++|||+|+|+++|.|||++++.+++.+..++||+||                        
T Consensus       369 p~~~~~v~i~~~~-----~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TG------------------------  419 (563)
T PLN02860        369 PAPHVELKIGLDE-----SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTG------------------------  419 (563)
T ss_pred             ccCCcEEEEecCC-----CCceeEEEEecCcccccccCCccccchhccCCCeEEcc------------------------
Confidence            9999999999976     68899999999999999999999999999889999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.||+||++|++|+|.|||+++.+||+|.+++|+++++...++.++++|+++
T Consensus       420 -------------Dl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~  486 (563)
T PLN02860        420 -------------DIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLR  486 (563)
T ss_pred             -------------ceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCc--------------CCCHHHHHHhhcc
Q psy5016         175 ENA--------------KLNAYEDKSISSD  190 (485)
Q Consensus       175 ~~~--------------~~~~~~l~~~l~~  190 (485)
                      ++.              ..+.++|++++++
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  516 (563)
T PLN02860        487 DGWIWSDNEKENAKKNLTLSSETLRHHCRE  516 (563)
T ss_pred             CccccccccchhhcccccccHHHHHHHHhh
Confidence            752              2345667777764

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.86  E-value=2.4e-21  Score=209.31  Aligned_cols=159  Identities=31%  Similarity=0.478  Sum_probs=140.4

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEcc---ccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGH---CNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPL   91 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~   91 (485)
                      |+++++++|+|+++++++.|+.|||+++|+   +++.|||++++.+++.+. ++||+||                     
T Consensus       348 ~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~-~~~~~TG---------------------  405 (542)
T PRK06155        348 LAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWR-NLWFHTG---------------------  405 (542)
T ss_pred             cCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhc-CCcEecc---------------------
Confidence            899999999999999999999999999998   799999999999988874 8999999                     


Q ss_pred             hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016          92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  171 (485)
Q Consensus        92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (485)
                                      |++++++||+++++||.+|+|+++|++|+|.+||++|.+||+|.+++|++++++..++.+.+++
T Consensus       406 ----------------D~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v  469 (542)
T PRK06155        406 ----------------DRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAV  469 (542)
T ss_pred             ----------------ceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEE
Confidence                            9999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         172 KLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       172 ~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      +++++...+..+++++|+++...+..      .++++.+.++++..
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r  515 (542)
T PRK06155        470 VLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQK  515 (542)
T ss_pred             EECCCCCCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeH
Confidence            98888788889999999876544322      34445555555443

>KOG1175|consensus

Probab=99.86  E-value=1.5e-21  Score=207.25  Aligned_cols=155  Identities=23%  Similarity=0.272  Sum_probs=124.4

Q ss_pred             CCCCCcCccccCCcEEEEEcCCCccCCCC-CceEEEEEc--c-ccccccCCCcccccccccC--CCceecCcccccchhh
Q psy5016           6 PTDLQFSTLSSSSFQAKVVDHNNRIVPFG-TPGELLIRG--H-CNMLGYWEDEQKTKETIGP--DRWLRTGRYKKTSFLY   79 (485)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~d~~~~~~~~g-~~Gel~i~~--~-~~~~gy~~~~~~~~~~~~~--~~~~~tg~~~~~~~~~   79 (485)
                      |...+..+.|++|+.+.|.|++|++++.+ ..|+|+++.  | |.+++||+|+++-..+...  .|+             
T Consensus       410 p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~-------------  476 (626)
T KOG1175|consen  410 PIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGY-------------  476 (626)
T ss_pred             CcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCce-------------
Confidence            33333344499999999999999999987 889999987  4 9999999998822211111  344             


Q ss_pred             hHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEee
Q psy5016          80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP  159 (485)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~  159 (485)
                                              |+|||.+++|+|||+++.||.||+||++|.++++.|||++|..||.|.|++|+|.+
T Consensus       477 ------------------------y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p  532 (626)
T KOG1175|consen  477 ------------------------YFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSP  532 (626)
T ss_pred             ------------------------EEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCC
Confidence                                    45559999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEEEEcCCcCCCH---HHHHHhhcccchhhHh
Q psy5016         160 DERMGEEVGISIKLKENAKLNA---YEDKSISSDYHEFETM  197 (485)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~  197 (485)
                      ++-+||.+.+||+++++...+.   ++|++.+|+...+.+.
T Consensus       533 ~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~  573 (626)
T KOG1175|consen  533 DPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAV  573 (626)
T ss_pred             CCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccc
Confidence            9999999999999999944332   3555555554444433

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.86  E-value=1.5e-21  Score=214.00  Aligned_cols=138  Identities=31%  Similarity=0.472  Sum_probs=122.9

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccC------------------CCceecCccccc
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP------------------DRWLRTGRYKKT   75 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~------------------~~~~~tg~~~~~   75 (485)
                      |+|+++++|+|++ |++++.|++|||+|+|++++.|||++++.|+++|..                  ++||+||     
T Consensus       407 ~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TG-----  481 (612)
T PRK12476        407 VARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTG-----  481 (612)
T ss_pred             cCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecc-----
Confidence            9999999999988 999999999999999999999999999999988741                  3599999     


Q ss_pred             chhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHc-CCCcce--
Q psy5016          76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--  152 (485)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~-~~~v~~--  152 (485)
                                                      |+|+++ ||+++|+||+||+||++|++|+|.|||++|.+ ||.|.+  
T Consensus       482 --------------------------------Dlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~  528 (612)
T PRK12476        482 --------------------------------DLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGY  528 (612)
T ss_pred             --------------------------------ccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCc
Confidence                                            999985 99999999999999999999999999999985 899999  


Q ss_pred             EEEEEeeCCCCCceEEEEEEEcCCcC-CCHHHHHHhhccc
Q psy5016         153 AYAYGVPDERMGEEVGISIKLKENAK-LNAYEDKSISSDY  191 (485)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~  191 (485)
                      ++|++++++. ++.++++++++++.. .+.++|.++++++
T Consensus       529 v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~  567 (612)
T PRK12476        529 VTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAIRAA  567 (612)
T ss_pred             EEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHHHHH
Confidence            7778888887 789999999887643 5667777776654

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.86  E-value=3.8e-21  Score=206.80  Aligned_cols=139  Identities=32%  Similarity=0.503  Sum_probs=130.7

Q ss_pred             cc-CCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SS-SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~-~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+ ++..++|+|++|++++.|+.|||+++|+.++.|||++++.+++.+..|+||+||                       
T Consensus       357 ~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TG-----------------------  413 (527)
T TIGR02275       357 PMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG-----------------------  413 (527)
T ss_pred             CCCCCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcC-----------------------
Confidence            77 478999999999999999999999999999999999999999999889999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++++||.||+|+++|++|+|.|||++|.+||+|.+++|+++++...++.+.++|++
T Consensus       414 --------------Dl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~  479 (527)
T TIGR02275       414 --------------DLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVV  479 (527)
T ss_pred             --------------ceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999999889999999998


Q ss_pred             cCCcCCCHHHHHHhhccc
Q psy5016         174 KENAKLNAYEDKSISSDY  191 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~  191 (485)
                      +++ ..+.++|+++++++
T Consensus       480 ~~~-~~~~~~l~~~l~~~  496 (527)
T TIGR02275       480 RDP-ALKAAQLRRFLRER  496 (527)
T ss_pred             CCC-CCCHHHHHHHHHhC
Confidence            765 46788899998764

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.86  E-value=4.7e-21  Score=207.85  Aligned_cols=143  Identities=36%  Similarity=0.637  Sum_probs=131.8

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|++.++|+|+++++++.|+.|||+|+|+.++.|||++++.+++.|..++||+||                        
T Consensus       391 p~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG------------------------  446 (562)
T PRK12492        391 PVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG------------------------  446 (562)
T ss_pred             ecCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecC------------------------
Confidence            99999999999999999999999999999999999999999999998778999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.||+|+++|++|+|.|||+.|.+||.|.++++++.++...++.+.++++..
T Consensus       447 -------------D~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  513 (562)
T PRK12492        447 -------------DIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVAR  513 (562)
T ss_pred             -------------cEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999988889999988876


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +. ..+.++++++++++...+
T Consensus       514 ~~-~~~~~~i~~~~~~~l~~~  533 (562)
T PRK12492        514 DP-GLSVEELKAYCKENFTGY  533 (562)
T ss_pred             CC-CCCHHHHHHHHHHhcccc
Confidence            54 456788888887664443

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.86  E-value=3.9e-21  Score=207.37  Aligned_cols=140  Identities=34%  Similarity=0.509  Sum_probs=127.5

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++|+|+++++++.|++|||+|+|+++|.||+  +..++. +. ++||+||                        
T Consensus       370 p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~~-~g~~~TG------------------------  421 (537)
T PRK13382        370 PAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-FH-DGFMASG------------------------  421 (537)
T ss_pred             cCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-cc-CCCEeeC------------------------
Confidence            9999999999999999999999999999999999998  444443 32 7999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.||+||++|++|+|.|||+.|.+||+|.+++|+++++...|+.+.++|++.
T Consensus       422 -------------Dl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~  488 (537)
T PRK13382        422 -------------DVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLK  488 (537)
T ss_pred             -------------ceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988899999999998


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++...+.++++++|+++...+
T Consensus       489 ~~~~~~~~~l~~~l~~~l~~~  509 (537)
T PRK13382        489 PGASATPETLKQHVRDNLANY  509 (537)
T ss_pred             CCCCCCHHHHHHHHHHhccCC
Confidence            877777888999988765444

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.86  E-value=8.9e-22  Score=219.04  Aligned_cols=198  Identities=17%  Similarity=0.252  Sum_probs=142.9

Q ss_pred             CcCcc--ccCCcEEEEEcCCC--ccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016          10 QFSTL--SSSSFQAKVVDHNN--RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~--~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      ..+++  |+|+++++|+|.++  ...+++..|||+|+|+++|.|||++|++|+++|..||||+||               
T Consensus       477 ~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TG---------------  541 (700)
T PTZ00216        477 EPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTG---------------  541 (700)
T ss_pred             CCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeecc---------------
Confidence            44566  99999999999875  345567789999999999999999999999999889999999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEE-eCcEEeChHHHHHHHHcCCCcce--EEEEEeeCCC
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLE--AYAYGVPDER  162 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~-~~g~~~~~~~ie~~~~~~~~v~~--~~~~~~~~~~  162 (485)
                                            |+|++++||+++|+||.||+|| .+|++|+|.|||+++.+||.|.+  ++|++.++. 
T Consensus       542 ----------------------Dig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~-  598 (700)
T PTZ00216        542 ----------------------DVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR-  598 (700)
T ss_pred             ----------------------ceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC-
Confidence                                  9999999999999999999998 99999999999999999999997  355554433 


Q ss_pred             CCceEEEEEEEcCCcCCCHHHHHHhhcccc-------------hhhHhhhhhhcCC-CCCCCccccc-ccCCCCcccccc
Q psy5016         163 MGEEVGISIKLKENAKLNAYEDKSISSDYH-------------EFETMYDSIMAHP-NRTTPYYQWW-SYDPNQSYVTHD  227 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------------~~~~~~~~I~~~~-n~~l~~~~~i-~~~~~~~~l~~~  227 (485)
                        ..++++|++++      +.+.+++++++             ....+..++.+.. +..+..+..+ ++.+....++..
T Consensus       599 --~~l~a~vv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~  670 (700)
T PTZ00216        599 --SYICALVLTDE------AKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPE  670 (700)
T ss_pred             --ceEEEEEecCH------HHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCC
Confidence              35778887643      33444443332             1122223332221 1223223333 677778888999


Q ss_pred             CCcceeeccccccCC-cEEEecccchhhHHHhh
Q psy5016         228 NGFPVDYNRALYSLK-MSSLLPHNFSAEVEAHY  259 (485)
Q Consensus       228 ~gl~v~~tsgTtg~p-K~vvls~~~~~~~~~~~  259 (485)
                      +|++      |...+ |+..+...|.......|
T Consensus       671 ~g~l------T~t~K~~R~~i~~~y~~~i~~ly  697 (700)
T PTZ00216        671 NGVL------TAAMKLKRRVIDERYADLIKELF  697 (700)
T ss_pred             CCCC------ChhhccchHHHHHHHHHHHHHHh
Confidence            9987      33333 54555555554444433

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.86  E-value=1.6e-20  Score=196.81  Aligned_cols=174  Identities=17%  Similarity=0.218  Sum_probs=128.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC-CCCccCccccCcccccC--CcEEEE-cC--CCCCCCCCceEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM-FKDVKNYLITPALKGLY--HFKKWM-NP--KFSTTTRKVALTW  361 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~-~~~~~~~~~~s~G~p~p--g~~v~I-d~--~~~~~~g~~Gel~  361 (485)
                      ++|+++++++.+.+.+.|+    ..+++.||+||++ ............|.+++  .+.++| |+  +.++++|+.|||+
T Consensus       202 ~~ge~l~~~~~~~i~~~~g----~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelv  277 (422)
T TIGR02155       202 FGAEPWTNAMRKEIEARLG----MKATDIYGLSEVIGPGVAMECVETQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELV  277 (422)
T ss_pred             EeCCcCCHHHHHHHHHHhC----CceEecccchhhcCCceeecccccCCCceEecCeeEEEEECCCCCCCCCCCCeeEEE
Confidence            7899999999999988887    4457999999973 11111110112344443  566778 74  5679999999999


Q ss_pred             EecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC-C-----eEEEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016         362 PNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED-G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQ  435 (485)
Q Consensus       362 v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~-G-----~l~i~GR~~d~I~~~G~~v~p~eIE~~l~  435 (485)
                      +++.              +...+    +.+ ||+|||+++++++ |     +++|.||.+|+|+++|.+|+|.+||++|.
T Consensus       278 vt~~--------------~~~~~----p~~-ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~  338 (422)
T TIGR02155       278 FTTL--------------TKEAL----PVI-RYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL  338 (422)
T ss_pred             EecC--------------Ccccc----cee-eEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH
Confidence            9987              23344    356 9999999999876 4     57899999999999999999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC-C--------HHHHHHHHHhhCCC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKL-N--------ADDIRTFCKGKVSK  484 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~-~--------~~~l~~~l~~~l~~  484 (485)
                      +||+|...+.+........+.+.++|+..++... .        .++|.+++++++..
T Consensus       339 ~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  396 (422)
T TIGR02155       339 KMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGV  396 (422)
T ss_pred             hCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCc
Confidence            9999986666666665555677787777654311 1        35677888777653

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.86  E-value=5.5e-21  Score=206.55  Aligned_cols=137  Identities=34%  Similarity=0.527  Sum_probs=128.9

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|+++++++.|++|||+|+|++++.|||++++.+++.  .++||+||                        
T Consensus       371 ~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TG------------------------  424 (547)
T PRK13295        371 PLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTG------------------------  424 (547)
T ss_pred             ccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecc------------------------
Confidence            9999999999999999999999999999999999999999988776  47899999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|++++.||.||++|++|++|+|.+||++|.+|++|.+++|+++++...|+.+.++|++.
T Consensus       425 -------------D~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~  491 (547)
T PRK13295        425 -------------DLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR  491 (547)
T ss_pred             -------------eEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcCCCHHHHHHhhcc
Q psy5016         175 ENAKLNAYEDKSISSD  190 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~  190 (485)
                      ++...+.+++.+++++
T Consensus       492 ~~~~~~~~~l~~~~~~  507 (547)
T PRK13295        492 PGQSLDFEEMVEFLKA  507 (547)
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            7766777888888875

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.86  E-value=4.7e-21  Score=204.15  Aligned_cols=143  Identities=34%  Similarity=0.502  Sum_probs=133.0

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++++|++++.++.|+.|||+++|+.++.|||+++..+.+.|. ++||+||                        
T Consensus       324 ~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~-~~~~~TG------------------------  378 (497)
T PRK06145        324 ALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFY-GDWFRSG------------------------  378 (497)
T ss_pred             CCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHh-CCCeecc------------------------
Confidence            999999999999999999999999999999999999999999988885 8999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.||+||++|++|+|.+||+.|.+||+|.+++|++.+++..++.+.+++++.
T Consensus       379 -------------Dl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  445 (497)
T PRK06145        379 -------------DVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLN  445 (497)
T ss_pred             -------------ceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999998899999999988


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +....+..+|.++|+++...+
T Consensus       446 ~~~~~~~~~l~~~~~~~l~~~  466 (497)
T PRK06145        446 PGATLTLEALDRHCRQRLASF  466 (497)
T ss_pred             CCCCCCHHHHHHHHHHhhhcC
Confidence            776677888888887664433

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.86  E-value=1.6e-21  Score=215.48  Aligned_cols=197  Identities=17%  Similarity=0.282  Sum_probs=150.0

Q ss_pred             cCcc--ccCCcEEEEEc--CCC-ccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016          11 FSTL--SSSSFQAKVVD--HNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d--~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      .+++  |.|+++++++|  ++| .+++.+..|||+|+|+++|.|||++|+.|+++| .||||+||               
T Consensus       435 ~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TG---------------  498 (660)
T PLN02430        435 LGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTG---------------  498 (660)
T ss_pred             CCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceecc---------------
Confidence            4666  99999999986  334 456666789999999999999999999999998 49999999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEe-CcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~-~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                            |++++++||+++|+||.||+||. +|++|+|.+||+++.+||.|.+++|+|..   .+
T Consensus       499 ----------------------Dig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~  553 (660)
T PLN02430        499 ----------------------DIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FK  553 (660)
T ss_pred             ----------------------ceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---Cc
Confidence                                  99999999999999999999995 79999999999999999999999999942   34


Q ss_pred             ceEEEEEEEcCCcCCCHHHHHHhhcccch-------------hhHhhhhhhcCC-CCCCCccccc-ccCCCCccccccCC
Q psy5016         165 EEVGISIKLKENAKLNAYEDKSISSDYHE-------------FETMYDSIMAHP-NRTTPYYQWW-SYDPNQSYVTHDNG  229 (485)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~~~~~~~I~~~~-n~~l~~~~~i-~~~~~~~~l~~~~g  229 (485)
                      +.++++|++++      +.+.++++.++.             ...+.+++.... +..++.+..+ ++.+..+.++..+|
T Consensus       554 ~~~~A~vv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g  627 (660)
T PLN02430        554 SMLVAVVVPNE------ENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERD  627 (660)
T ss_pred             ceEEEEEEcCH------HHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCC
Confidence            67888888753      445455443321             112222332221 3345555555 78888889999999


Q ss_pred             cceeeccccccCC-cEEEecccchhhHHHhhh
Q psy5016         230 FPVDYNRALYSLK-MSSLLPHNFSAEVEAHYN  260 (485)
Q Consensus       230 l~v~~tsgTtg~p-K~vvls~~~~~~~~~~~~  260 (485)
                      ++      |...+ |+..+...|.......+.
T Consensus       628 ~l------T~t~K~~R~~i~~~y~~~i~~ly~  653 (660)
T PLN02430        628 LV------TATLKKRRNNLLKYYQVEIDEMYR  653 (660)
T ss_pred             cC------ChhhhhhhHHHHHHHHHHHHHHHH
Confidence            87      43444 666666677666666554

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.86  E-value=6.4e-21  Score=203.35  Aligned_cols=143  Identities=33%  Similarity=0.487  Sum_probs=133.5

Q ss_pred             ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|+++++|+| +++++++.|++|||+|+|++++.|||++++.+++.|..++||+||                       
T Consensus       326 ~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG-----------------------  382 (504)
T PRK07514        326 PLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITG-----------------------  382 (504)
T ss_pred             CCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeec-----------------------
Confidence            99999999999 779999999999999999999999999999999999889999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |+++++++|++++.||.||+||++|++|+|.|||+++.+++.|.++++++++++..++.+.+++++
T Consensus       383 --------------Dl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~  448 (504)
T PRK07514        383 --------------DLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP  448 (504)
T ss_pred             --------------ceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             cCCcCCCHHHHHHhhcccchh
Q psy5016         174 KENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~~  194 (485)
                      .++...+.++++++++++...
T Consensus       449 ~~~~~~~~~~l~~~~~~~l~~  469 (504)
T PRK07514        449 KPGAALDEAAILAALKGRLAR  469 (504)
T ss_pred             CCCCCCCHHHHHHHHHhhccc
Confidence            877777788888888765433

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.85  E-value=5.1e-21  Score=206.39  Aligned_cols=138  Identities=32%  Similarity=0.494  Sum_probs=130.0

Q ss_pred             cc-CCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SS-SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~-~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+ |++.++|+|++|++++.|+.|||+++|+.+|.|||++++.+++.|..|+||+||                       
T Consensus       358 p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TG-----------------------  414 (536)
T PRK10946        358 PMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG-----------------------  414 (536)
T ss_pred             ccCCCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecC-----------------------
Confidence            76 789999999999999999999999999999999999999999999889999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |+++++++|++++.||.+|+++++|++|+|.|||+.|.+||+|.+++++++++...|+.+++++++
T Consensus       415 --------------Dl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~  480 (536)
T PRK10946        415 --------------DLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVV  480 (536)
T ss_pred             --------------ceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEe
Confidence                          999999999999999999999999999999999999999999999999999999889999999988


Q ss_pred             cCCcCCCHHHHHHhhccc
Q psy5016         174 KENAKLNAYEDKSISSDY  191 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~  191 (485)
                      +++  .+.+++++++++.
T Consensus       481 ~~~--~~~~~l~~~~~~~  496 (536)
T PRK10946        481 KEP--LKAVQLRRFLREQ  496 (536)
T ss_pred             CCC--CCHHHHHHHHHhC
Confidence            764  6778888888754

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.85  E-value=3.5e-21  Score=208.02  Aligned_cols=143  Identities=32%  Similarity=0.527  Sum_probs=132.8

Q ss_pred             ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|+++++|+| ++++++|.|+.|||+|+|++++.|||+++..+++.+..++||+||                       
T Consensus       366 ~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG-----------------------  422 (546)
T PLN02330        366 ILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTG-----------------------  422 (546)
T ss_pred             ccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecc-----------------------
Confidence            99999999999 458999999999999999999999999999999888889999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++++||.+|+|+++|++|+|.+||++|.+++.|.+++|++++++..|+.+.++|++
T Consensus       423 --------------D~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  488 (546)
T PLN02330        423 --------------DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI  488 (546)
T ss_pred             --------------cEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             cCCcCCCHHHHHHhhcccchh
Q psy5016         174 KENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~~  194 (485)
                      .++...+.++++++++.+...
T Consensus       489 ~~~~~~~~~~l~~~~~~~l~~  509 (546)
T PLN02330        489 NPKAKESEEDILNFVAANVAH  509 (546)
T ss_pred             CCCCCCCHHHHHHHHHHhccc
Confidence            877667788888888765433

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.85  E-value=5.5e-21  Score=212.91  Aligned_cols=164  Identities=21%  Similarity=0.318  Sum_probs=139.6

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhc
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      .+++  |+++++++|+|++|++++.|+.|||+|+|++++.|||++++.+.   ..++||+||                  
T Consensus       312 ~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TG------------------  370 (705)
T PRK06060        312 LGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTR------------------  370 (705)
T ss_pred             cCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECC------------------
Confidence            3444  99999999999999999999999999999999999999988643   358999999                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (485)
                                         |++++++||+++++||.||+||++|++|+|.|||+.|.+||.|.+++|+++++...++.+.
T Consensus       371 -------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~  431 (705)
T PRK06060        371 -------------------DRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQ  431 (705)
T ss_pred             -------------------eeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEE
Confidence                               9999999999999999999999999999999999999999999999999999888888999


Q ss_pred             EEEEEcCCcCCCH---HHHHHhhcccchhh------HhhhhhhcCCCCCCCcccc
Q psy5016         169 ISIKLKENAKLNA---YEDKSISSDYHEFE------TMYDSIMAHPNRTTPYYQW  214 (485)
Q Consensus       169 ~~~~~~~~~~~~~---~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~~~~~  214 (485)
                      ++|++.++...+.   .+++++|+++...+      ..+++++.+.++++..+..
T Consensus       432 a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L  486 (705)
T PRK06060        432 AFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGAL  486 (705)
T ss_pred             EEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHH
Confidence            9999876654443   46677777665433      2356777777777765543

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.85  E-value=5.6e-21  Score=204.06  Aligned_cols=142  Identities=32%  Similarity=0.450  Sum_probs=127.1

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccC--CCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP--DRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~--~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+|+ .++|+|++|++++.|++|||+|+|++++.|||++++.+++.+.+  ++|++||                      
T Consensus       328 ~~~g-~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tG----------------------  384 (501)
T PRK13390        328 SVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVG----------------------  384 (501)
T ss_pred             cccc-eEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcC----------------------
Confidence            8899 79999999999999999999999999999999999999988754  6799999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |++++++||++++.||.||+||++|++|+|.|||++|..||.|.++++++++++..++.+.++++
T Consensus       385 ---------------Dl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~  449 (501)
T PRK13390        385 ---------------DLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQ  449 (501)
T ss_pred             ---------------ceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEE
Confidence                           99999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcCCcCCC---HHHHHHhhcccchh
Q psy5016         173 LKENAKLN---AYEDKSISSDYHEF  194 (485)
Q Consensus       173 ~~~~~~~~---~~~l~~~l~~~~~~  194 (485)
                      +.++...+   .+++.++++++...
T Consensus       450 ~~~~~~~~~~~~~~l~~~~~~~l~~  474 (501)
T PRK13390        450 LVEGIRGSDELARELIDYTRSRIAH  474 (501)
T ss_pred             ecCCCCcchhhHHHHHHHHHHhccc
Confidence            87654333   34666777655433

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.85  E-value=6.8e-21  Score=209.40  Aligned_cols=147  Identities=24%  Similarity=0.287  Sum_probs=126.9

Q ss_pred             cCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEcc---ccccccCCCccccccccc---CCCceecCcccccchhhhH
Q psy5016          11 FSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGH---CNMLGYWEDEQKTKETIG---PDRWLRTGRYKKTSFLYSA   81 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~~---~~~~~~tg~~~~~~~~~~~   81 (485)
                      .+++  |+|+++++|+|+ +|++++.|+.|||+|+||   +.+.|||++++.+.+.+.   .++||+||           
T Consensus       410 ~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG-----------  478 (629)
T PRK10524        410 LGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF-----------  478 (629)
T ss_pred             CCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcC-----------
Confidence            3444  999999999999 899999999999999997   578999999987665432   36899999           


Q ss_pred             HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                                |++++++||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++
T Consensus       479 --------------------------Dl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~  532 (629)
T PRK10524        479 --------------------------DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDA  532 (629)
T ss_pred             --------------------------CcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccC
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEcCCcCCC--------HHHHHHhhcccchh
Q psy5016         162 RMGEEVGISIKLKENAKLN--------AYEDKSISSDYHEF  194 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~l~~~~~~  194 (485)
                      ..|+.+.++|+++++...+        .++|+++++++...
T Consensus       533 ~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~  573 (629)
T PRK10524        533 LKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGA  573 (629)
T ss_pred             CCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCC
Confidence            8999999999998764332        34566666655443

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.85  E-value=7e-21  Score=202.55  Aligned_cols=139  Identities=29%  Similarity=0.393  Sum_probs=126.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++|.+++.|+.|||+|+|+.++.|||+++..+.+.+ .++||+||                        
T Consensus       312 ~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TG------------------------  366 (487)
T PRK07638        312 PFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVR------------------------  366 (487)
T ss_pred             ccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecC------------------------
Confidence            99999999999999999999999999999999999999998776654 48999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.+|+||++|++|+|.|||.+|.+||+|.+++|++++++..|+.+.++++. 
T Consensus       367 -------------Dl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~-  432 (487)
T PRK07638        367 -------------DVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG-  432 (487)
T ss_pred             -------------ccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC-
Confidence                         999999999999999999999999999999999999999999999999999999888999888864 


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                         ..+.++++++|+++...+
T Consensus       433 ---~~~~~~l~~~~~~~l~~~  450 (487)
T PRK07638        433 ---SATKQQLKSFCLQRLSSF  450 (487)
T ss_pred             ---CCCHHHHHHHHHHHhhcc
Confidence               356778888887654433

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.85  E-value=6.3e-21  Score=206.91  Aligned_cols=141  Identities=29%  Similarity=0.548  Sum_probs=131.4

Q ss_pred             ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|+++++|+| +++.+++.|++|||+|+|++++.|||+++..+++.+. +|||+||                       
T Consensus       392 p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dg~~~TG-----------------------  447 (567)
T PRK06178        392 PVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTG-----------------------  447 (567)
T ss_pred             ccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhccc-CCceeec-----------------------
Confidence            99999999999 5699999999999999999999999999998888875 7899999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++++||.+|+|+++|++|+|.|||+++..++.|.++++++++++..|+.++++|++
T Consensus       448 --------------Dl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~  513 (567)
T PRK06178        448 --------------DIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL  513 (567)
T ss_pred             --------------ceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEe
Confidence                          999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             cCCcCCCHHHHHHhhcccch
Q psy5016         174 KENAKLNAYEDKSISSDYHE  193 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~  193 (485)
                      +++...+.++++++++++..
T Consensus       514 ~~~~~~~~~~l~~~~~~~l~  533 (567)
T PRK06178        514 KPGADLTAAALQAWCRENMA  533 (567)
T ss_pred             CCCCcCCHHHHHHHHHhcCc
Confidence            87777788899998876543

>PRK08315 AMP-binding domain protein; Validated

Probab=99.85  E-value=9.2e-21  Score=205.00  Aligned_cols=143  Identities=47%  Similarity=0.792  Sum_probs=133.2

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|++.++|+|++ |++++.|++|||+|+|+.++.|||+++..+++.+..++||+||                       
T Consensus       376 p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG-----------------------  432 (559)
T PRK08315        376 ALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG-----------------------  432 (559)
T ss_pred             cCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEcc-----------------------
Confidence            8999999999988 9999999999999999999999999999999888779999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++++||.||+++++|++|+|.|||++|..+++|.+++|++++++..++.+.++|++
T Consensus       433 --------------D~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  498 (559)
T PRK08315        433 --------------DLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIIL  498 (559)
T ss_pred             --------------ceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEe
Confidence                          999999999999999999999999999999999999999999999999999988888899999998


Q ss_pred             cCCcCCCHHHHHHhhcccchh
Q psy5016         174 KENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~~  194 (485)
                      .++...+.++++++++++...
T Consensus       499 ~~~~~~~~~~l~~~l~~~l~~  519 (559)
T PRK08315        499 RPGATLTEEDVRDFCRGKIAH  519 (559)
T ss_pred             CCCCCCCHHHHHHHHHhhccc
Confidence            877677888888888765433

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.85  E-value=6.5e-21  Score=205.90  Aligned_cols=155  Identities=18%  Similarity=0.226  Sum_probs=123.7

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccc-cCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI-GPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+|+++++|+|++ +.+++.|++|||+|+|+++|.|||++++.+.... .+++||+||                      
T Consensus       358 p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TG----------------------  415 (539)
T PRK06334        358 PIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG----------------------  415 (539)
T ss_pred             ecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECC----------------------
Confidence            9999999999965 7899999999999999999999999998655432 347899999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcce------EEEEEeeCCCCCce
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE------AYAYGVPDERMGEE  166 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~------~~~~~~~~~~~~~~  166 (485)
                                     |+++++++|+++++||.||+||++|++|+|.|||++|.+||+|.+      ++|++++++.  ..
T Consensus       416 ---------------D~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~  478 (539)
T PRK06334        416 ---------------DLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VR  478 (539)
T ss_pred             ---------------CEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eE
Confidence                           999999999999999999999999999999999999999999987      7788887543  24


Q ss_pred             EEEEEEEcCCcCCCHHHHHHhhcccc-hhh------HhhhhhhcCCCCCCCcc
Q psy5016         167 VGISIKLKENAKLNAYEDKSISSDYH-EFE------TMYDSIMAHPNRTTPYY  212 (485)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~------~~~~~I~~~~n~~l~~~  212 (485)
                      ++++++..    .+.++++++|+++. ..+      ...++++.+.++++...
T Consensus       479 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~  527 (539)
T PRK06334        479 LCLFTTFP----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYC  527 (539)
T ss_pred             EEEEEecc----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHH
Confidence            44554432    35678888887652 111      23455666666655443

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.84  E-value=1.1e-20  Score=203.00  Aligned_cols=143  Identities=31%  Similarity=0.498  Sum_probs=132.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++++|++|++++.|+.|||+|+|+.++.|||++++.+++.+. ++||+||                        
T Consensus       345 ~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-~~~~~TG------------------------  399 (528)
T PRK07470        345 ERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFR-DGWFRTG------------------------  399 (528)
T ss_pred             ccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhc-CCcEecc------------------------
Confidence            899999999999999999999999999999999999999999888874 8999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||++++.||.||++|++|++|+|.+||+.|.+++.|.+++|++.+++..|+.+.++++..
T Consensus       400 -------------Dl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~  466 (528)
T PRK07470        400 -------------DLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVAR  466 (528)
T ss_pred             -------------eeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988888898999888


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++...+.++++++|+++...+
T Consensus       467 ~~~~~~~~~~~~~l~~~l~~~  487 (528)
T PRK07470        467 DGAPVDEAELLAWLDGKVARY  487 (528)
T ss_pred             CCCCCCHHHHHHHHHHhhhcC
Confidence            776678888888887654333

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.84  E-value=2.1e-20  Score=198.26  Aligned_cols=142  Identities=32%  Similarity=0.483  Sum_probs=128.4

Q ss_pred             ccCCcEEEEEcCCCccCC-CCC-ceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHNNRIVP-FGT-PGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~-~g~-~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+++++++|+|++|++++ .|+ +|||+++|++++.|||++++.+++.|.+++||+||                      
T Consensus       298 ~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TG----------------------  355 (471)
T PRK07787        298 PLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG----------------------  355 (471)
T ss_pred             cCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecC----------------------
Confidence            999999999999999887 454 89999999999999999999999999889999999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeecc-CceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  171 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~-~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (485)
                                     |++++++||+++++||. ||+++++|++|+|.+||++|..++.|.+++|++.++...++.+.++|
T Consensus       356 ---------------Dlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v  420 (471)
T PRK07787        356 ---------------DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYV  420 (471)
T ss_pred             ---------------ceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEE
Confidence                           99999999999999996 89999999999999999999999999999999999888889999999


Q ss_pred             EEcCCcCCCHHHHHHhhcccchhh
Q psy5016         172 KLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       172 ~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++.+  ..+.+++.++++++...+
T Consensus       421 ~~~~--~~~~~~l~~~l~~~l~~~  442 (471)
T PRK07787        421 VGAD--DVAADELIDFVAQQLSVH  442 (471)
T ss_pred             EeCC--CCCHHHHHHHHHhhcccc
Confidence            8843  457778888887654443

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.84  E-value=2e-20  Score=201.72  Aligned_cols=137  Identities=33%  Similarity=0.521  Sum_probs=128.2

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++|++++.|++|||+|+|++++.|||++++.++.  ..++||+||                        
T Consensus       369 ~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~--~~~~~~~TG------------------------  422 (538)
T TIGR03208       369 PLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST--DAEGWFDTG------------------------  422 (538)
T ss_pred             cCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCcccccc--cCCCceecc------------------------
Confidence            999999999999999999999999999999999999999987653  468999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.||+|+++|++|+|.|||++|.+||+|.+++|++.++...|+.+.++|++.
T Consensus       423 -------------D~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  489 (538)
T TIGR03208       423 -------------DLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK  489 (538)
T ss_pred             -------------ceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988899999999998


Q ss_pred             CCcCCCHHHHHHhhcc
Q psy5016         175 ENAKLNAYEDKSISSD  190 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~  190 (485)
                      ++...+.+++.++++.
T Consensus       490 ~~~~~~~~~l~~~~~~  505 (538)
T TIGR03208       490 PGCTLDFAAMVAFLKA  505 (538)
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            8777788888888874

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.84  E-value=1.8e-20  Score=202.06  Aligned_cols=142  Identities=23%  Similarity=0.265  Sum_probs=128.8

Q ss_pred             ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      +.+++.++|+|+ ++++++.|+.|||+|+|++++.|||+++..|++.|..++||+||                       
T Consensus       355 ~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TG-----------------------  411 (540)
T PRK06164        355 ASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTG-----------------------  411 (540)
T ss_pred             cCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecC-----------------------
Confidence            358999999995 58999999999999999999999999999999999889999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |+++++++|++++.||.||+||++|++|+|.|||+.|..||+|.+++|++++. ..++.+.+++++
T Consensus       412 --------------Dl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~  476 (540)
T PRK06164        412 --------------DLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIP  476 (540)
T ss_pred             --------------CeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEe
Confidence                          99999999999999999999999999999999999999999999999999884 345788899998


Q ss_pred             cCCcCCCHHHHHHhhcccchh
Q psy5016         174 KENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~~  194 (485)
                      .++...+.+++.++|+++...
T Consensus       477 ~~~~~~~~~~l~~~~~~~l~~  497 (540)
T PRK06164        477 TDGASPDEAGLMAACREALAG  497 (540)
T ss_pred             CCCCCCCHHHHHHHHHhhccc
Confidence            887777888898888765433

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.84  E-value=2.4e-20  Score=201.60  Aligned_cols=143  Identities=43%  Similarity=0.748  Sum_probs=133.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|+++.+++.|+.|||+|+|+.++.||++++..+++.+..++||+||                        
T Consensus       378 p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG------------------------  433 (558)
T PRK12583        378 TQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG------------------------  433 (558)
T ss_pred             cCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeecc------------------------
Confidence            99999999999999999999999999999999999999999998888778999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||++++.||.||+|+++|++|+|.+||+.|.+||.|.+++|++++++..++.+.+++++.
T Consensus       434 -------------Dl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  500 (558)
T PRK12583        434 -------------DLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLH  500 (558)
T ss_pred             -------------ceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988889999999988


Q ss_pred             CCcCCCHHHHHHhhcccchh
Q psy5016         175 ENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~  194 (485)
                      ++...+..+++++|+++...
T Consensus       501 ~~~~~~~~~i~~~~~~~L~~  520 (558)
T PRK12583        501 PGHAASEEELREFCKARIAH  520 (558)
T ss_pred             CCCCCCHHHHHHHHHhhccc
Confidence            77667788888888765443

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.84  E-value=1.8e-20  Score=200.26  Aligned_cols=149  Identities=26%  Similarity=0.398  Sum_probs=131.6

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccC-----------CCceecCcccccc
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP-----------DRWLRTGRYKKTS   76 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~-----------~~~~~tg~~~~~~   76 (485)
                      ..+++  |+|+++++|+|++|++++.|+.|||+++|+.++.|||+++..+.+.+.+           ++|++||      
T Consensus       326 ~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG------  399 (515)
T TIGR03098       326 RPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSG------  399 (515)
T ss_pred             CCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceecc------
Confidence            34455  9999999999999999999999999999999999999999888777643           2356666      


Q ss_pred             hhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEE
Q psy5016          77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY  156 (485)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~  156 (485)
                                                     |+++++++|++++.||.||+|+++|++|+|.|||+.|.+||.|.+++|+
T Consensus       400 -------------------------------D~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~  448 (515)
T TIGR03098       400 -------------------------------DTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAF  448 (515)
T ss_pred             -------------------------------ceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEE
Confidence                                           9999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCceEEEEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         157 GVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +++++..|+.+.++++..++...+.++++++++++...+
T Consensus       449 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~  487 (515)
T TIGR03098       449 GVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNY  487 (515)
T ss_pred             eccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccc
Confidence            999999999999999877666678888888887654433

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=2.1e-20  Score=201.63  Aligned_cols=144  Identities=29%  Similarity=0.478  Sum_probs=129.9

Q ss_pred             ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCccccccccc---CCCceecCcccccchhhhHHHHhhhcch
Q psy5016          15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG---PDRWLRTGRYKKTSFLYSAMAIRRKLKP   90 (485)
Q Consensus        15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~---~~~~~~tg~~~~~~~~~~~~~~~~~~~~   90 (485)
                      |+|+++++|+|+ ++++++.|..|||+|+|+.++.|||+++..+++.|.   +++||+||                    
T Consensus       362 ~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG--------------------  421 (546)
T PRK08314        362 PTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG--------------------  421 (546)
T ss_pred             ccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC--------------------
Confidence            999999999995 589999999999999999999999999998888763   34699999                    


Q ss_pred             hhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEE
Q psy5016          91 LQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  170 (485)
Q Consensus        91 ~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  170 (485)
                                       |+++++++|+++++||.||+|+++|++|+|.|||++|.+||+|.+++|+++++...++.+.++
T Consensus       422 -----------------Dl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~  484 (546)
T PRK08314        422 -----------------DLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAV  484 (546)
T ss_pred             -----------------CEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEE
Confidence                             999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEEcCCcC--CCHHHHHHhhcccchhh
Q psy5016         171 IKLKENAK--LNAYEDKSISSDYHEFE  195 (485)
Q Consensus       171 ~~~~~~~~--~~~~~l~~~l~~~~~~~  195 (485)
                      |+++++..  .+.++++++|+++...+
T Consensus       485 v~~~~~~~~~~~~~~l~~~~~~~l~~~  511 (546)
T PRK08314        485 VVLRPEARGKTTEEEIIAWAREHMAAY  511 (546)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHhcccC
Confidence            99887643  45688888888765544

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=1.9e-20  Score=202.70  Aligned_cols=143  Identities=38%  Similarity=0.639  Sum_probs=131.4

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++|+|++|++++.|+.|||+++|+.++.|||++++.+++.+..++||+||                        
T Consensus       385 p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG------------------------  440 (557)
T PRK07059        385 PLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG------------------------  440 (557)
T ss_pred             ccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecC------------------------
Confidence            99999999999999999999999999999999999999999999888889999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.+|+|+++|++|+|.+||+.|.+|+.|.+++|+++++...|+.+.++++..
T Consensus       441 -------------Dl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~  507 (557)
T PRK07059        441 -------------DVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK  507 (557)
T ss_pred             -------------cEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999998899999988876


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +. ..+.++++++|+++....
T Consensus       508 ~~-~~~~~~l~~~~~~~l~~~  527 (557)
T PRK07059        508 DP-ALTEEDVKAFCKERLTNY  527 (557)
T ss_pred             CC-CCCHHHHHHHHHHhcccc
Confidence            43 466778888887654433

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.83  E-value=2.4e-20  Score=200.68  Aligned_cols=133  Identities=27%  Similarity=0.337  Sum_probs=114.4

Q ss_pred             ccCCcEEEEEcCCC-ccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|+++++|+|+++ .+++.|++|||+|+|+++|.|||+++..+     .++||+||                       
T Consensus       350 p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TG-----------------------  401 (525)
T PRK05851        350 PIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTG-----------------------  401 (525)
T ss_pred             CCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceecc-----------------------
Confidence            99999999999886 46999999999999999999999998643     47899999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |+++++ +|+++++||.||+||++|+||+|.|||++|.+||+|.+++|++++++..++.+.++|+.
T Consensus       402 --------------Dl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~  466 (525)
T PRK05851        402 --------------DLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAA  466 (525)
T ss_pred             --------------ceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEE
Confidence                          999997 89999999999999999999999999999999999999999999988888887777765


Q ss_pred             cCCcCCCHHHHHHhhccc
Q psy5016         174 KENAKLNAYEDKSISSDY  191 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~  191 (485)
                      ... ..+.++++++|+++
T Consensus       467 ~~~-~~~~~~~~~~~~~~  483 (525)
T PRK05851        467 EFR-GPDEAGARSEVVQR  483 (525)
T ss_pred             Eec-CcchHHHHHHHHHH
Confidence            421 23445555555543

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.83  E-value=3.6e-20  Score=197.71  Aligned_cols=144  Identities=41%  Similarity=0.609  Sum_probs=134.5

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++|+|+++++++.|+.|||+|+|+.++.|||+++..+++.+.+++||+||                        
T Consensus       342 ~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tG------------------------  397 (513)
T PRK07656        342 AIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTG------------------------  397 (513)
T ss_pred             cCCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceecc------------------------
Confidence            99999999999999999999999999999999999999999999888779999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.||+++++|.+|+|.+||+.|.++++|.++++++.++...|+.+.++|+.+
T Consensus       398 -------------Dl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~  464 (513)
T PRK07656        398 -------------DLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLK  464 (513)
T ss_pred             -------------ceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988899999999988


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++...+.+++.++++++....
T Consensus       465 ~~~~~~~~~l~~~~~~~l~~~  485 (513)
T PRK07656        465 PGAELTEEELIAYCREHLAKY  485 (513)
T ss_pred             CCCCCCHHHHHHHHHhhcccc
Confidence            766778888999887665443

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.83  E-value=4.7e-20  Score=198.77  Aligned_cols=136  Identities=26%  Similarity=0.391  Sum_probs=126.5

Q ss_pred             ccCCcEEEEEc-CCCccCCCCC------------ceEEEE-EccccccccCCCcccccccccCCCceecCcccccchhhh
Q psy5016          15 SSSSFQAKVVD-HNNRIVPFGT------------PGELLI-RGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS   80 (485)
Q Consensus        15 ~~~~~~~~i~d-~~~~~~~~g~------------~Gel~i-~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~   80 (485)
                      |+++  ++++| +++.+++.|+            .|||++ +|+.++.|||++++.+.+.+. ++||+||          
T Consensus       320 ~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g~~~TG----------  386 (529)
T PRK07867        320 LPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR-GGVYWSG----------  386 (529)
T ss_pred             CCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc-CCeEeec----------
Confidence            7888  77888 4688899988            999998 999999999999999988885 8999999          


Q ss_pred             HHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeC
Q psy5016          81 AMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD  160 (485)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~  160 (485)
                                                 |+++++++|+++++||.||+|+++|++|+|.|||++|.+||+|.+++|+++++
T Consensus       387 ---------------------------D~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~  439 (529)
T PRK07867        387 ---------------------------DLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPD  439 (529)
T ss_pred             ---------------------------cEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccC
Confidence                                       99999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEEEcCCcCCCHHHHHHhhcc
Q psy5016         161 ERMGEEVGISIKLKENAKLNAYEDKSISSD  190 (485)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  190 (485)
                      +..|+++.+++++.++...+.++++++|+.
T Consensus       440 ~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~  469 (529)
T PRK07867        440 PVVGDQVMAALVLAPGAKFDPDAFAEFLAA  469 (529)
T ss_pred             CCCCeeEEEEEEECCCCCCCHHHHHHHHHh
Confidence            999999999999988877888999988865

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.83  E-value=5.1e-20  Score=200.09  Aligned_cols=143  Identities=36%  Similarity=0.627  Sum_probs=132.0

Q ss_pred             ccCCcEEEEEcCC--CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHN--NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~--~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+|++.++|+|++  +.+++.|+.|||+|+|+.++.||+++++.+++.|. ++||+||                      
T Consensus       394 ~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG----------------------  450 (573)
T PRK05605        394 PFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTG----------------------  450 (573)
T ss_pred             CCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc-CCCcccC----------------------
Confidence            9999999999977  58999999999999999999999999999998885 6799999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |+++++++|++++.||.||+++++|++|+|.+||++|..|+.|.+++++++++...++.+.++++
T Consensus       451 ---------------D~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv  515 (573)
T PRK05605        451 ---------------DVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVV  515 (573)
T ss_pred             ---------------CEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEE
Confidence                           99999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             EcCCcCCCHHHHHHhhcccchhh
Q psy5016         173 LKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++++...+.++|+++++++....
T Consensus       516 ~~~~~~~~~~~l~~~~~~~l~~~  538 (573)
T PRK05605        516 LEPGAALDPEGLRAYCREHLTRY  538 (573)
T ss_pred             ECCCCCCCHHHHHHHHHHhCccc
Confidence            98877778888988887654433

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.83  E-value=2.2e-20  Score=201.64  Aligned_cols=127  Identities=33%  Similarity=0.598  Sum_probs=116.0

Q ss_pred             Ccc--ccCCcEEEEEcCCCcc-C-----CCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHH
Q psy5016          12 STL--SSSSFQAKVVDHNNRI-V-----PFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMA   83 (485)
Q Consensus        12 ~~~--~~~~~~~~i~d~~~~~-~-----~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~   83 (485)
                      +++  |+|+++++|+|+++.. +     +.|+.|||+|+|+.++.|||++++.+++.|. ++||+||             
T Consensus       342 ~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TG-------------  407 (540)
T PRK05857        342 GAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTG-------------  407 (540)
T ss_pred             CCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC-CCceecc-------------
Confidence            455  9999999999988762 2     4578999999999999999999999998885 8999999             


Q ss_pred             HhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC
Q psy5016          84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  163 (485)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~  163 (485)
                                              |+++++++|++++.||.||+||++|++|+|.|||++|..||.|.+++|+++++...
T Consensus       408 ------------------------Dlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~  463 (540)
T PRK05857        408 ------------------------DLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEF  463 (540)
T ss_pred             ------------------------ceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCcccc
Confidence                                    99999999999999999999999999999999999999999999999999999888


Q ss_pred             CceEEEEEEEcCC
Q psy5016         164 GEEVGISIKLKEN  176 (485)
Q Consensus       164 ~~~~~~~~~~~~~  176 (485)
                      ++.+.++++..+.
T Consensus       464 ~~~~~~~vv~~~~  476 (540)
T PRK05857        464 GALVGLAVVASAE  476 (540)
T ss_pred             ccceEEEEEeCCC
Confidence            8888888887654

>KOG1180|consensus

Probab=99.83  E-value=5.7e-21  Score=195.02  Aligned_cols=210  Identities=20%  Similarity=0.316  Sum_probs=170.7

Q ss_pred             CCCCCCCcCcc--ccCCcEEEEEc-CCCccCCCCC--ceEEEEEccccccccCCCcccccccccC-CC--ceecCccccc
Q psy5016           4 MNPTDLQFSTL--SSSSFQAKVVD-HNNRIVPFGT--PGELLIRGHCNMLGYWEDEQKTKETIGP-DR--WLRTGRYKKT   75 (485)
Q Consensus         4 ~~~~~~~~~~~--~~~~~~~~i~d-~~~~~~~~g~--~Gel~i~~~~~~~gy~~~~~~~~~~~~~-~~--~~~tg~~~~~   75 (485)
                      .+|.++..|++  |+|.++++++| ++|...+.+.  -|||+|+|++++.||+++|++|++.|.. ||  ||+||     
T Consensus       446 ~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TG-----  520 (678)
T KOG1180|consen  446 LEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTG-----  520 (678)
T ss_pred             cChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEecc-----
Confidence            35677778888  99999999999 5666666665  6999999999999999999999999987 88  99999     


Q ss_pred             chhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEE-eCcEEeChHHHHHHHHcCCCcceEE
Q psy5016          76 SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAY  154 (485)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~-~~g~~~~~~~ie~~~~~~~~v~~~~  154 (485)
                                                      |+|++.+||.|.|.+|++|.+| .+|+.|++.-+|.++.+.|.|.+.+
T Consensus       521 --------------------------------DIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NIC  568 (678)
T KOG1180|consen  521 --------------------------------DIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNIC  568 (678)
T ss_pred             --------------------------------ccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheE
Confidence                                            9999999999999999999999 8999999999999999999999999


Q ss_pred             EEEeeCCCCCceEEEEEEEcCCc--------CCCHHHHHHhhcccchhhHhhhhhhcCCCCCCCccccc--ccCCCCccc
Q psy5016         155 AYGVPDERMGEEVGISIKLKENA--------KLNAYEDKSISSDYHEFETMYDSIMAHPNRTTPYYQWW--SYDPNQSYV  224 (485)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~I~~~~n~~l~~~~~i--~~~~~~~~l  224 (485)
                      ||+.....   .++++||++++.        -.+..++.++|.+.....+..+++.++..........+  ++.+++..+
T Consensus       569 vyAd~~~s---~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~W  645 (678)
T KOG1180|consen  569 VYADSNKS---KPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPW  645 (678)
T ss_pred             Eecccccc---eeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCc
Confidence            99976665   488999987552        13345788889888888889999998875544333333  788899999


Q ss_pred             cccCCcceeeccccccCC-cEEEecccchhhHHHhh
Q psy5016         225 THDNGFPVDYNRALYSLK-MSSLLPHNFSAEVEAHY  259 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~p-K~vvls~~~~~~~~~~~  259 (485)
                      +.++|+.      |...+ |+-.+...|..+....|
T Consensus       646 TPenGlv------T~A~KLKRk~I~~~~k~ei~~~Y  675 (678)
T KOG1180|consen  646 TPENGLV------TAALKLKRKEILAAYKKEIDRLY  675 (678)
T ss_pred             CCCcccc------HHHHHhhHHHHHHHHHHHHHHHh
Confidence            9999998      44444 44444444544444433

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.83  E-value=8.5e-20  Score=197.20  Aligned_cols=161  Identities=20%  Similarity=0.317  Sum_probs=135.6

Q ss_pred             ccCCcEE-----------EEEcCCCccC-CCCCceEEEEE-ccccccccCCCcccccccccCCCceecCcccccchhhhH
Q psy5016          15 SSSSFQA-----------KVVDHNNRIV-PFGTPGELLIR-GHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA   81 (485)
Q Consensus        15 ~~~~~~~-----------~i~d~~~~~~-~~g~~Gel~i~-~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~   81 (485)
                      |+|++.+           .++|++|+++ +.+..|||+++ |++++.|||++++.+++.+. ++||+||           
T Consensus       318 p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~-~g~~~TG-----------  385 (540)
T PRK13388        318 GAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-HGMYWSG-----------  385 (540)
T ss_pred             CCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHhh-cCceecc-----------
Confidence            8888764           3566677766 45679999998 99999999999999998884 7899999           


Q ss_pred             HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                                |++++++||+++++||.||+||++|++|+|.|||++|.+||.|.+|+|++++++
T Consensus       386 --------------------------D~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~  439 (540)
T PRK13388        386 --------------------------DLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDE  439 (540)
T ss_pred             --------------------------ceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCC
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEcCCcCCCHHHHHHhhccc--chhh------HhhhhhhcCCCCCCCccc
Q psy5016         162 RMGEEVGISIKLKENAKLNAYEDKSISSDY--HEFE------TMYDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~------~~~~~I~~~~n~~l~~~~  213 (485)
                      ..|+.+.+++++.++...+.++++++++.+  ...+      ...++++.+.++++....
T Consensus       440 ~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~  499 (540)
T PRK13388        440 RVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRE  499 (540)
T ss_pred             CCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHh
Confidence            889999999999888778888899888753  2222      124566666666665444

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.83  E-value=5e-20  Score=199.54  Aligned_cols=142  Identities=38%  Similarity=0.587  Sum_probs=129.6

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |++++.++++|++|++++.|+.|||+|+|++++.|||++++.+++.+..++||+||                        
T Consensus       387 ~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TG------------------------  442 (560)
T PRK08751        387 PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTG------------------------  442 (560)
T ss_pred             cCCCceEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCcccc------------------------
Confidence            99999999999999999999999999999999999999999999988888999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|++++.||.+|+|+++|++|+|.+||+.|..|+.|.+++|+++++...|+.+.++++..
T Consensus       443 -------------D~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~  509 (560)
T PRK08751        443 -------------DIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK  509 (560)
T ss_pred             -------------ceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC
Confidence                         9999999999999999999999999999999999999999999999999999988888887777654


Q ss_pred             CCcCCCHHHHHHhhcccchh
Q psy5016         175 ENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~  194 (485)
                       +...+.++++++++++...
T Consensus       510 -~~~~~~~~l~~~~~~~l~~  528 (560)
T PRK08751        510 -DPALTAEDVKAHARANLTG  528 (560)
T ss_pred             -CCCCCHHHHHHHHHHhhhh
Confidence             4456777888888765433

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.83  E-value=5.8e-20  Score=197.29  Aligned_cols=141  Identities=35%  Similarity=0.635  Sum_probs=131.9

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|++.++|+|+++++++.|+.|||+|+|+.++.||++++..+++.+. ++||+||                        
T Consensus       344 p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG------------------------  398 (524)
T PRK06188        344 PTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFR-DGWLHTG------------------------  398 (524)
T ss_pred             ccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhc-CCceeec------------------------
Confidence            999999999999999999999999999999999999999998888874 8999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||++++.||.+|+++++|++|+|.+||++|.+|++|.+++|++.+++..++.+.++++++
T Consensus       399 -------------Dl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  465 (524)
T PRK06188        399 -------------DVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLR  465 (524)
T ss_pred             -------------ceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988889999999998


Q ss_pred             CCcCCCHHHHHHhhcccch
Q psy5016         175 ENAKLNAYEDKSISSDYHE  193 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~  193 (485)
                      +....+.++|+++|+++..
T Consensus       466 ~~~~~~~~~l~~~~~~~l~  484 (524)
T PRK06188        466 PGAAVDAAELQAHVKERKG  484 (524)
T ss_pred             CCCCCCHHHHHHHHHHhcc
Confidence            8767778888888876543

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.83  E-value=6.7e-20  Score=198.75  Aligned_cols=141  Identities=34%  Similarity=0.572  Sum_probs=130.9

Q ss_pred             ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|++.++++| +++.+++.|+.|||+++|+.++.||+++++.+.+.+. ++||+||                       
T Consensus       381 ~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TG-----------------------  436 (563)
T PRK06710        381 PWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTG-----------------------  436 (563)
T ss_pred             CCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcc-cCccccc-----------------------
Confidence            99999999998 5689999999999999999999999999999988875 8999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |+++++++|+++++||.||+|+++|.+|+|.|||++|.+||.|.+++|++++++..|+.+.++++.
T Consensus       437 --------------D~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~  502 (563)
T PRK06710        437 --------------DVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVL  502 (563)
T ss_pred             --------------ceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             cCCcCCCHHHHHHhhcccch
Q psy5016         174 KENAKLNAYEDKSISSDYHE  193 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~  193 (485)
                      .++...+.++++++++++..
T Consensus       503 ~~~~~~~~~~l~~~~~~~l~  522 (563)
T PRK06710        503 KEGTECSEEELNQFARKYLA  522 (563)
T ss_pred             CCCCCCCHHHHHHHHHHhcc
Confidence            88777788888888876533

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.82  E-value=5.3e-20  Score=219.24  Aligned_cols=162  Identities=22%  Similarity=0.191  Sum_probs=135.2

Q ss_pred             ccCCcEEEEEcCC--CccCCCCCceEEEEEccccccccCCCcccccccccC----------------------------C
Q psy5016          15 SSSSFQAKVVDHN--NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP----------------------------D   64 (485)
Q Consensus        15 ~~~~~~~~i~d~~--~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~----------------------------~   64 (485)
                      |+++++++|+|++  ++++|.|++|||+|+|+++++|||++|++|+++|..                            +
T Consensus       598 ~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1389)
T TIGR03443       598 GMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRD  677 (1389)
T ss_pred             ccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCcc
Confidence            8999999999976  578999999999999999999999999999998842                            3


Q ss_pred             CceecCcccccchhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHH
Q psy5016          65 RWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI  144 (485)
Q Consensus        65 ~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~  144 (485)
                      +||+||                                     |++++++||+++|+||.||+||++|+||+|.|||.+|
T Consensus       678 ~~y~TG-------------------------------------Dlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l  720 (1389)
T TIGR03443       678 RLYRTG-------------------------------------DLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHL  720 (1389)
T ss_pred             ceeecC-------------------------------------CceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHH
Confidence            566666                                     9999999999999999999999999999999999999


Q ss_pred             HcCCCcceEEEEEeeCCCCCceEEEEEEEcCCc-CC-------------------------CHHHHHHhhcccchhhH--
Q psy5016         145 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KL-------------------------NAYEDKSISSDYHEFET--  196 (485)
Q Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------~~~~l~~~l~~~~~~~~--  196 (485)
                      .+||.|.+++|++.++...++.++++|++..+. ..                         ..++++++|+++...+.  
T Consensus       721 ~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P  800 (1389)
T TIGR03443       721 SQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIP  800 (1389)
T ss_pred             HhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCC
Confidence            999999999999998888788899999876321 10                         13567777777654443  


Q ss_pred             ----hhhhhhcCCCCCCCccc
Q psy5016         197 ----MYDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       197 ----~~~~I~~~~n~~l~~~~  213 (485)
                          ..+.++.+.++++..+.
T Consensus       801 ~~~~~~~~lP~t~~GKidr~~  821 (1389)
T TIGR03443       801 TVIVPLKKLPLNPNGKVDKPA  821 (1389)
T ss_pred             ceEEEcccCCCCCCccccHhh
Confidence                24567777777766544

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.82  E-value=9.1e-20  Score=195.14  Aligned_cols=140  Identities=36%  Similarity=0.542  Sum_probs=131.0

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++|+|++|++++.|+.|||+++|+.++.||+++++.+++.|. ++||+||                        
T Consensus       346 ~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~-~~~~~TG------------------------  400 (523)
T PRK08316        346 PVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFR-GGWFHSG------------------------  400 (523)
T ss_pred             CCCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhh-CCCeecc------------------------
Confidence            999999999999999999999999999999999999999999998884 8999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.||+|+++|++|+|.+||+.|.+++.|.+++|++++++..++.+.++++++
T Consensus       401 -------------Dl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  467 (523)
T PRK08316        401 -------------DLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPK  467 (523)
T ss_pred             -------------ceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999999899999999998


Q ss_pred             CCcCCCHHHHHHhhcccc
Q psy5016         175 ENAKLNAYEDKSISSDYH  192 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~  192 (485)
                      ++...+.+++.++++++.
T Consensus       468 ~~~~~~~~~l~~~~~~~l  485 (523)
T PRK08316        468 AGATVTEDELIAHCRARL  485 (523)
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            776677788888876543

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.82  E-value=1.6e-19  Score=193.68  Aligned_cols=137  Identities=31%  Similarity=0.484  Sum_probs=125.4

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++|++++.|+.|||+++|+.++.||++++..   .+ .++||+||                        
T Consensus       350 ~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TG------------------------  401 (516)
T PRK13383        350 PVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTG------------------------  401 (516)
T ss_pred             CCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecc------------------------
Confidence            999999999999999999999999999999999999987642   22 37999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.||+||++|++|+|.+||++|..||+|.+++++++++...++.+.++|+++
T Consensus       402 -------------Dl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~  468 (516)
T PRK13383        402 -------------DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLH  468 (516)
T ss_pred             -------------eeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988899999999998


Q ss_pred             CCcCCCHHHHHHhhcccc
Q psy5016         175 ENAKLNAYEDKSISSDYH  192 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~  192 (485)
                      ++...+.++++++++++.
T Consensus       469 ~~~~~~~~~l~~~~~~~l  486 (516)
T PRK13383        469 PGSGVDAAQLRDYLKDRV  486 (516)
T ss_pred             CCCCCCHHHHHHHHHHhc
Confidence            776677788888887654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.82  E-value=5.3e-20  Score=215.18  Aligned_cols=161  Identities=24%  Similarity=0.254  Sum_probs=133.5

Q ss_pred             cCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccC---CCceecCcccccchhhhHHHH
Q psy5016          11 FSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP---DRWLRTGRYKKTSFLYSAMAI   84 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~---~~~~~tg~~~~~~~~~~~~~~   84 (485)
                      .+++  |+|+++++|+|+ +++++|.|++|||+++|+.++.|||++++.|++.+..   ++||+||              
T Consensus       959 ~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TG-------------- 1024 (1146)
T PRK08633        959 EGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTG-------------- 1024 (1146)
T ss_pred             CCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECC--------------
Confidence            3445  999999999995 5899999999999999999999999999999888752   3899999              


Q ss_pred             hhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCC--CcceEEEEEeeCCC
Q psy5016          85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGVPDER  162 (485)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~--~v~~~~~~~~~~~~  162 (485)
                                             |++++|+||+++++||.||+||++|++|+|.|||++|.+||  .+.+++|++++|+.
T Consensus      1025 -----------------------D~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~ 1081 (1146)
T PRK08633       1025 -----------------------DKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEK 1081 (1146)
T ss_pred             -----------------------CEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCC
Confidence                                   99999999999999999999999999999999999999999  56689999999999


Q ss_pred             CCceEEEEEEEcCCcCCCHHHHHHhhccc-chhh------HhhhhhhcCCCCCCCc
Q psy5016         163 MGEEVGISIKLKENAKLNAYEDKSISSDY-HEFE------TMYDSIMAHPNRTTPY  211 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~------~~~~~I~~~~n~~l~~  211 (485)
                      .|+.+.++++..   ..+.++++++++++ ...+      ...++++.+++++...
T Consensus      1082 ~g~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r 1134 (1146)
T PRK08633       1082 KGEKLVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDL 1134 (1146)
T ss_pred             CCcEEEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcH
Confidence            999999988862   34667787777542 2211      2244555555555443

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.82  E-value=1.1e-19  Score=197.98  Aligned_cols=138  Identities=30%  Similarity=0.445  Sum_probs=118.6

Q ss_pred             cEEEEEcCC-CccCCC--CCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhhh
Q psy5016          19 FQAKVVDHN-NRIVPF--GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQ   95 (485)
Q Consensus        19 ~~~~i~d~~-~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~   95 (485)
                      ..++++|++ +++++.  ++.|||+|+|+.+++|||++++.+++.|. ++||+||                         
T Consensus       372 ~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-~gw~~TG-------------------------  425 (579)
T PLN03102        372 ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNTG-------------------------  425 (579)
T ss_pred             cceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc-cCceecC-------------------------
Confidence            356677744 677764  36899999999999999999999998885 8999999                         


Q ss_pred             hhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcC
Q psy5016          96 QQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  175 (485)
Q Consensus        96 ~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  175 (485)
                                  |++++|+||++++.||.||+|+++|++|+|.|||.+|.+||.|.+++|++++++..++.+.++|++.+
T Consensus       426 ------------Dlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~  493 (579)
T PLN03102        426 ------------DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEK  493 (579)
T ss_pred             ------------ceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecC
Confidence                        99999999999999999999999999999999999999999999999999999988999999999876


Q ss_pred             CcCC----------CHHHHHHhhcccchh
Q psy5016         176 NAKL----------NAYEDKSISSDYHEF  194 (485)
Q Consensus       176 ~~~~----------~~~~l~~~l~~~~~~  194 (485)
                      +...          +..+++++|+++...
T Consensus       494 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~~  522 (579)
T PLN03102        494 GETTKEDRVDKLVTRERDLIEYCRENLPH  522 (579)
T ss_pred             cccccccccccccccHHHHHHHHHhhccc
Confidence            6443          245666666654333

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.82  E-value=1.7e-19  Score=192.63  Aligned_cols=139  Identities=33%  Similarity=0.529  Sum_probs=126.5

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+ +++++|+|+++.+++.|+.|||+++|+.++.|||+++..+++.+.+++||+||                        
T Consensus       320 ~~-~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG------------------------  374 (502)
T PRK08276        320 AV-LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVG------------------------  374 (502)
T ss_pred             ec-ccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeec------------------------
Confidence            88 78999999999999999999999999999999999999999999888999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|.+++.||.||++|++|.+|++.+||.+|.+||.|.+++++++.++..++.+.++|+++
T Consensus       375 -------------D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  441 (502)
T PRK08276        375 -------------DVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPA  441 (502)
T ss_pred             -------------ceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999988899999999998


Q ss_pred             CCcCCCHH---HHHHhhccc
Q psy5016         175 ENAKLNAY---EDKSISSDY  191 (485)
Q Consensus       175 ~~~~~~~~---~l~~~l~~~  191 (485)
                      ++...+.+   ++.++++++
T Consensus       442 ~~~~~~~~~~~~i~~~~~~~  461 (502)
T PRK08276        442 DGADAGDALAAELIAWLRGR  461 (502)
T ss_pred             CCCCCChhhHHHHHHHHHhh
Confidence            76544332   566666544

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.82  E-value=9.7e-20  Score=196.71  Aligned_cols=138  Identities=33%  Similarity=0.597  Sum_probs=128.8

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |++++.++++|+++++++.|+.|||+++|++++.|||++++.+.+.+..++||+||                        
T Consensus       360 ~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG------------------------  415 (547)
T PRK06087        360 AAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG------------------------  415 (547)
T ss_pred             cCCCceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcC------------------------
Confidence            99999999999999999999999999999999999999999998888778999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.+|+|+++|++|+|.+||++|..+|+|.++++++.+++..|+.+.+++++.
T Consensus       416 -------------Dl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~  482 (547)
T PRK06087        416 -------------DLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLK  482 (547)
T ss_pred             -------------ceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999999998899999999987


Q ss_pred             C-CcCCCHHHHHHhhc
Q psy5016         175 E-NAKLNAYEDKSISS  189 (485)
Q Consensus       175 ~-~~~~~~~~l~~~l~  189 (485)
                      + +...+.+++.+++.
T Consensus       483 ~~~~~~~~~~~~~~~~  498 (547)
T PRK06087        483 APHHSLTLEEVVAFFS  498 (547)
T ss_pred             CCCCCCCHHHHHHHHH
Confidence            6 44566677777664

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.81  E-value=2.2e-19  Score=191.44  Aligned_cols=143  Identities=19%  Similarity=0.125  Sum_probs=123.0

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCccccccccc---CCCceecCcccccchhhhHHHHhhhcchh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG---PDRWLRTGRYKKTSFLYSAMAIRRKLKPL   91 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~---~~~~~~tg~~~~~~~~~~~~~~~~~~~~~   91 (485)
                      |.|+++++|+|+++++++.|+.|||+++|+.++.|||++++.+.+.+.   .++||+||                     
T Consensus       321 ~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TG---------------------  379 (502)
T TIGR01734       321 AKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTG---------------------  379 (502)
T ss_pred             ccCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECC---------------------
Confidence            899999999999999999999999999999999999999998887762   34699999                     


Q ss_pred             hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEee-CCCCCceEEEE
Q psy5016          92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP-DERMGEEVGIS  170 (485)
Q Consensus        92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~  170 (485)
                                      |+++++++ +++++||.+|+|+++|++|+|.+||+.+.+||+|.+++++++. +...++.+.++
T Consensus       380 ----------------Dlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~  442 (502)
T TIGR01734       380 ----------------DAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAA  442 (502)
T ss_pred             ----------------CEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEE
Confidence                            99999976 9999999999999999999999999999999999999999976 55567889999


Q ss_pred             EEEcCCcCCCH----HHHHHhhcccchhh
Q psy5016         171 IKLKENAKLNA----YEDKSISSDYHEFE  195 (485)
Q Consensus       171 ~~~~~~~~~~~----~~l~~~l~~~~~~~  195 (485)
                      |++.+......    .++++.++++...+
T Consensus       443 v~~~~~~~~~~~~~~~~i~~~~~~~l~~~  471 (502)
T TIGR01734       443 IVPETEDFEKEFQLTKAIKKELKKSLPAY  471 (502)
T ss_pred             EEecccccccchhhHHHHHHHHhhhChhh
Confidence            98876433222    45666666554433

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.81  E-value=2.1e-19  Score=190.09  Aligned_cols=129  Identities=27%  Similarity=0.355  Sum_probs=114.7

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+        .|+.|||+|+|++++.|||+++.      ..++||+||                        
T Consensus       288 ~~p~~~v~i~--------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TG------------------------  329 (452)
T PRK07445        288 VLPHAQITIP--------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETD------------------------  329 (452)
T ss_pred             cCCCCeEEEc--------CCCcceEEEeCCccchhhcCCcc------CCCCEEECC------------------------
Confidence            8899999887        46789999999999999998643      247899999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++|+||++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..|+.+.+++++.
T Consensus       330 -------------Dl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~  396 (452)
T PRK07445        330 -------------DLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPK  396 (452)
T ss_pred             -------------CEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999999899999999987


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++ ..+.++++++|+++...+
T Consensus       397 ~~-~~~~~~l~~~~~~~L~~~  416 (452)
T PRK07445        397 DP-SISLEELKTAIKDQLSPF  416 (452)
T ss_pred             CC-CCCHHHHHHHHHHhCCcc
Confidence            65 456788888887654443

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.81  E-value=1.3e-19  Score=197.24  Aligned_cols=137  Identities=26%  Similarity=0.484  Sum_probs=124.0

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++++.++.|+.|||+|+|++++.|||++ ..+.+.+..++||+||                        
T Consensus       390 ~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TG------------------------  444 (579)
T PRK09192        390 ALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTG------------------------  444 (579)
T ss_pred             cCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeecc------------------------
Confidence            899999999999999999999999999999999999999 6677777789999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcc--eEEEEEeeCCCCCceEEEEEE
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                   |++++ ++|+++++||.||+||++|++|+|.|||+.|.+||+|.  ++++++++++. ++.+.++++
T Consensus       445 -------------Dlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~  509 (579)
T PRK09192        445 -------------DLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQ  509 (579)
T ss_pred             -------------ceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEE
Confidence                         99999 89999999999999999999999999999999999998  89999998875 568888888


Q ss_pred             EcCCcCCCHHHHHHhhccc
Q psy5016         173 LKENAKLNAYEDKSISSDY  191 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~  191 (485)
                      ..++...+.++|.++++++
T Consensus       510 ~~~~~~~~~~~l~~~~~~~  528 (579)
T PRK09192        510 CRISDEERRGQLIHALAAL  528 (579)
T ss_pred             ecCCChHHHHHHHHHHHHH
Confidence            7766556667788777654

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.81  E-value=1.9e-19  Score=194.45  Aligned_cols=141  Identities=35%  Similarity=0.575  Sum_probs=129.2

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|++.++|+|+++++++.|+.|||+++|+.+++|||++++.+++.|. ++||+||                        
T Consensus       350 ~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~-~~~~~TG------------------------  404 (542)
T PRK07786        350 VIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFA-GGWFHSG------------------------  404 (542)
T ss_pred             cCCCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhh-CCccccc------------------------
Confidence            999999999999999999999999999999999999999999998885 8999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.||+|+++|++|++.|||++|.+||.|.+++|++.+++..++.+.+++++.
T Consensus       405 -------------Dl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  471 (542)
T PRK07786        405 -------------DLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVR  471 (542)
T ss_pred             -------------ceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999998888888898998887


Q ss_pred             CCc-CCCHHHHHHhhcccch
Q psy5016         175 ENA-KLNAYEDKSISSDYHE  193 (485)
Q Consensus       175 ~~~-~~~~~~l~~~l~~~~~  193 (485)
                      +.. ....++++++|+++..
T Consensus       472 ~~~~~~~~~~l~~~l~~~l~  491 (542)
T PRK07786        472 NDDAALTLEDLAEFLTDRLA  491 (542)
T ss_pred             CCCCCCCHHHHHHHHHhhcc
Confidence            653 3566788888876543

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.81  E-value=3.7e-19  Score=190.37  Aligned_cols=142  Identities=28%  Similarity=0.439  Sum_probs=129.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEcccccc-ccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNML-GYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~-gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+|++.++|+|+++++++.|++|||+++|+.++. |||+++..+++.+ .++||+||                       
T Consensus       329 ~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TG-----------------------  384 (509)
T PRK12406        329 AAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSG-----------------------  384 (509)
T ss_pred             cCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEc-----------------------
Confidence            9999999999999999999999999999998865 9999998887665 58999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||++++.||.||+||++|.+|+|.+||+.|.++|.|.+++++++++...++.+.+++++
T Consensus       385 --------------D~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  450 (509)
T PRK12406        385 --------------DVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEP  450 (509)
T ss_pred             --------------cEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999988888999999998


Q ss_pred             cCCcCCCHHHHHHhhcccchh
Q psy5016         174 KENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~~~~  194 (485)
                      .++...+.++++++++++...
T Consensus       451 ~~~~~~~~~~l~~~l~~~l~~  471 (509)
T PRK12406        451 QPGATLDEADIRAQLKARLAG  471 (509)
T ss_pred             CCCCCCCHHHHHHHHHHhccc
Confidence            876666788888888765433

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.81  E-value=2.6e-19  Score=193.16  Aligned_cols=143  Identities=35%  Similarity=0.522  Sum_probs=128.3

Q ss_pred             ccCCcEEEEE--cCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVV--DHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~--d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |++++.++|+  |+++++++.|+.|||+++|++++.|||++++.+++.|. ++||+||                      
T Consensus       370 ~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TG----------------------  426 (541)
T TIGR03205       370 MLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTG----------------------  426 (541)
T ss_pred             eccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc-cCCcccC----------------------
Confidence            8899988875  56789999999999999999999999999999988885 7899999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |+++++++|+++++||.||+||++|++|+|.+||+++.+|+.|.+++|++++++..++.+.++++
T Consensus       427 ---------------D~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  491 (541)
T TIGR03205       427 ---------------DIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVK  491 (541)
T ss_pred             ---------------ceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEE
Confidence                           99999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             EcCCcC-CCHHHHHHhhcccchhh
Q psy5016         173 LKENAK-LNAYEDKSISSDYHEFE  195 (485)
Q Consensus       173 ~~~~~~-~~~~~l~~~l~~~~~~~  195 (485)
                      +.++.. .+.++++++++++...+
T Consensus       492 ~~~~~~~~~~~~l~~~~~~~l~~~  515 (541)
T TIGR03205       492 LRPGAKPFSLDELRAFLAGKLGKH  515 (541)
T ss_pred             ECCCCCcCCHHHHHHHHHhhcccc
Confidence            886643 56778888887654433

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.81  E-value=2.8e-19  Score=191.49  Aligned_cols=142  Identities=33%  Similarity=0.529  Sum_probs=126.7

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCC-CceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD-RWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~-~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+++ .++|+|++|++++.|++|||+++|+ ++.|||++++.+++.+.++ +||+||                       
T Consensus       333 ~~~g-~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TG-----------------------  387 (511)
T PRK13391        333 AMFG-DLHILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVG-----------------------  387 (511)
T ss_pred             cccc-eEEEECCCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecC-----------------------
Confidence            8888 6899999999999999999999999 8999999999999888765 999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |+++++++|++++.||.||++|++|.+|+|.|||++|.+||.|.+++++++++...|+.+.+++++
T Consensus       388 --------------D~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~  453 (511)
T PRK13391        388 --------------DIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQP  453 (511)
T ss_pred             --------------CEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCcCC---CHHHHHHhhcccchhh
Q psy5016         174 KENAKL---NAYEDKSISSDYHEFE  195 (485)
Q Consensus       174 ~~~~~~---~~~~l~~~l~~~~~~~  195 (485)
                      .++...   ..++++++|+++...+
T Consensus       454 ~~~~~~~~~~~~~l~~~~~~~l~~~  478 (511)
T PRK13391        454 VDGVDPGPALAAELIAFCRQRLSRQ  478 (511)
T ss_pred             CCCCCcccchHHHHHHHHHhhcccC
Confidence            765432   2367777877654433

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.81  E-value=2.5e-19  Score=193.45  Aligned_cols=139  Identities=25%  Similarity=0.380  Sum_probs=125.0

Q ss_pred             ccCCcEEEEEcCCCccCCCC--CceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFG--TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+|+++++|+|+++++++.+  ++|||+++|+.++.|||+++.   ..+. ++||+||                      
T Consensus       361 p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~-~g~~~TG----------------------  414 (539)
T PRK07008        361 VIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLV-DGWFPTG----------------------  414 (539)
T ss_pred             cccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhc-CCCcccC----------------------
Confidence            99999999999999988864  579999999999999999883   2333 7899999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |++++++||+++++||+||+||++|++|+|.|||+++..||.|.+++++++++...++.+.++|+
T Consensus       415 ---------------D~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~  479 (539)
T PRK07008        415 ---------------DVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVV  479 (539)
T ss_pred             ---------------ceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEE
Confidence                           99999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             EcCCcCCCHHHHHHhhcccchh
Q psy5016         173 LKENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~~~~  194 (485)
                      ..++...+.++++++++++...
T Consensus       480 ~~~~~~~~~~~l~~~~~~~l~~  501 (539)
T PRK07008        480 KRPGAEVTREELLAFYEGKVAK  501 (539)
T ss_pred             eCCCCccCHHHHHHHHHhhccc
Confidence            8877777888899888765433

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.80  E-value=3.9e-19  Score=188.63  Aligned_cols=143  Identities=33%  Similarity=0.503  Sum_probs=127.7

Q ss_pred             Ccc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcc
Q psy5016          12 STL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLK   89 (485)
Q Consensus        12 ~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~   89 (485)
                      +++  |+|+++++|.|+ +++++.|++|||+++|+.++.|||+++..+++.| .++||+||                   
T Consensus       307 ~~vG~p~~~~~~~i~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tG-------------------  365 (483)
T PRK03640        307 GSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTG-------------------  365 (483)
T ss_pred             CCcccccCCcEEEEecC-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeecc-------------------
Confidence            444  999999999986 4899999999999999999999999999998887 48999999                   


Q ss_pred             hhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEE
Q psy5016          90 PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  169 (485)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~  169 (485)
                                        |++++++||++++.||+||++|++|.+|+|.+||+++..++.|.++++++.+++..++.+.+
T Consensus       366 ------------------Dl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~  427 (483)
T PRK03640        366 ------------------DIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVA  427 (483)
T ss_pred             ------------------ceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEE
Confidence                              99999999999999999999999999999999999999999999999999998888888888


Q ss_pred             EEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         170 SIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       170 ~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +++..+  ..+.++++++|+++...+
T Consensus       428 ~~~~~~--~~~~~~l~~~~~~~l~~~  451 (483)
T PRK03640        428 FVVKSG--EVTEEELRHFCEEKLAKY  451 (483)
T ss_pred             EEEeCC--CCCHHHHHHHHHHhccCC
Confidence            887543  567788888887654333

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.80  E-value=7.5e-19  Score=179.75  Aligned_cols=143  Identities=24%  Similarity=0.392  Sum_probs=121.5

Q ss_pred             CCCCCCCCCcCc--cccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhh
Q psy5016           2 WDMNPTDLQFST--LSSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY   79 (485)
Q Consensus         2 ~~~~~~~~~~~~--~~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~   79 (485)
                      |++++.......  .|+|++++++.|           |||+++|+.++.|||+++..+  .+..++||+||         
T Consensus       182 YG~TE~~~~~~~~G~~~~g~~v~i~~-----------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TG---------  239 (358)
T PRK07824        182 YGMSETSGGCVYDGVPLDGVRVRVED-----------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTD---------  239 (358)
T ss_pred             ccCCccCCCcCcCceeCCCCEEEecC-----------CEEEEecCccccccCCCcccc--cccCCCceecc---------
Confidence            556654433322  389999999844           999999999999999988743  34457899999         


Q ss_pred             hHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEee
Q psy5016          80 SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP  159 (485)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~  159 (485)
                                                  |++++ ++|+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+
T Consensus       240 ----------------------------Dl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~  290 (358)
T PRK07824        240 ----------------------------DLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLP  290 (358)
T ss_pred             ----------------------------cEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecC
Confidence                                        99999 7999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         160 DERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++..|+.+.++++.+++...+.++|+++++++...+
T Consensus       291 ~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~  326 (358)
T PRK07824        291 DDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRT  326 (358)
T ss_pred             CCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccc
Confidence            999899999999888776778889988887665443

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.80  E-value=5.5e-19  Score=191.44  Aligned_cols=141  Identities=42%  Similarity=0.651  Sum_probs=127.8

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|++.++|+|+++++++.|+.|||+|+|+.++.|||+++..+++.+ .++||+||                        
T Consensus       383 ~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TG------------------------  437 (560)
T PRK08974        383 PVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATG------------------------  437 (560)
T ss_pred             CcCCCEEEEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccC------------------------
Confidence            99999999999999999999999999999999999999999988888 58999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.+|+|+++|.+|+|.+||++|.+||.|.+++|++.++...|+.+.++++..
T Consensus       438 -------------Dl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~  504 (560)
T PRK08974        438 -------------DIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKK  504 (560)
T ss_pred             -------------CEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECC
Confidence                         9999999999999999999999999999999999999999999999999999998888888877654


Q ss_pred             CCcCCCHHHHHHhhcccchh
Q psy5016         175 ENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~  194 (485)
                      + ...+.+++++++.++...
T Consensus       505 ~-~~~~~~~l~~~l~~~l~~  523 (560)
T PRK08974        505 D-PSLTEEELITHCRRHLTG  523 (560)
T ss_pred             C-CCCCHHHHHHHHHhhccc
Confidence            4 345667788887765443

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.79  E-value=5.7e-19  Score=209.09  Aligned_cols=162  Identities=20%  Similarity=0.209  Sum_probs=138.7

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccC------CCceecCcccccchhhhHHHHhhhc
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP------DRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~------~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      |+++++++|+|++++++|.|++|||+|+|+++++|||++++.|+++|..      ++||+||                  
T Consensus       781 p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TG------------------  842 (1296)
T PRK10252        781 PVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG------------------  842 (1296)
T ss_pred             ccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecC------------------
Confidence            9999999999999999999999999999999999999999999998854      3488888                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEee----CCCCC
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP----DERMG  164 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~----~~~~~  164 (485)
                                         |++++++||+++++||.|++||++|++|+|.|||++|.+||+|.+++|+++.    +...|
T Consensus       843 -------------------Dl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~  903 (1296)
T PRK10252        843 -------------------DVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGG  903 (1296)
T ss_pred             -------------------ceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCC
Confidence                               9999999999999999999999999999999999999999999999887763    11122


Q ss_pred             --ceEEEEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCccc
Q psy5016         165 --EEVGISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       165 --~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~  213 (485)
                        ..++++|+..++...+.++|+++++++...+..      .++++.+.++++....
T Consensus       904 ~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~  960 (1296)
T PRK10252        904 DARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKA  960 (1296)
T ss_pred             CccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHh
Confidence              378899998877667788999999887655543      4566777777666544

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.79  E-value=6.3e-19  Score=191.81  Aligned_cols=159  Identities=25%  Similarity=0.381  Sum_probs=132.5

Q ss_pred             ccCCcEEEEEcCCCccCC--CCCceEEEEEccccccccCCCcccc----cc------------cccCCCceecCcccccc
Q psy5016          15 SSSSFQAKVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKT----KE------------TIGPDRWLRTGRYKKTS   76 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~--~g~~Gel~i~~~~~~~gy~~~~~~~----~~------------~~~~~~~~~tg~~~~~~   76 (485)
                      +.++++++|+|+ |..++  ++..|||+++|+.++.|||+++..+    .+            .+..++||+||      
T Consensus       363 ~~~~~~~~i~~~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TG------  435 (576)
T PRK05620        363 FPASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTG------  435 (576)
T ss_pred             cCCceeEEEecC-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecC------
Confidence            778999999997 77664  5789999999999999999999877    22            34456888888      


Q ss_pred             hhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEE
Q psy5016          77 FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY  156 (485)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~  156 (485)
                                                     |++++++||+++++||.||+|+++|++|+|.+||++|.+||.|.+++|+
T Consensus       436 -------------------------------D~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv  484 (576)
T PRK05620        436 -------------------------------DVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVI  484 (576)
T ss_pred             -------------------------------ceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEE
Confidence                                           9999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCceEEEEEEEcCCcCC---CHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         157 GVPDERMGEEVGISIKLKENAKL---NAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      +.+++..|+.+.+++++.++...   +.++|+++|+++...+..      .+.++.+.++++..
T Consensus       485 ~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r  548 (576)
T PRK05620        485 GYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDK  548 (576)
T ss_pred             eccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcH
Confidence            99999989999999998876433   467888888876555433      34455555554443

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.79  E-value=9.5e-19  Score=195.38  Aligned_cols=159  Identities=16%  Similarity=0.163  Sum_probs=126.6

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCC--ccc-------ccccccCCCceecCcccccchh
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWED--EQK-------TKETIGPDRWLRTGRYKKTSFL   78 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~--~~~-------~~~~~~~~~~~~tg~~~~~~~~   78 (485)
                      ..+++  |+|+++++|+|++|.    ++.|||+++|+++|.|||++  ++.       +.+.+..++||+||        
T Consensus       529 ~~~svG~p~pg~~~~i~d~~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TG--------  596 (718)
T PRK08043        529 KPGTVGRILPGMDARLLSVPGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTG--------  596 (718)
T ss_pred             CCCCCCCcCCCCeeEEecCCCC----CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecC--------
Confidence            34555  999999999998763    56799999999999999984  332       22223347899999        


Q ss_pred             hhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEe
Q psy5016          79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV  158 (485)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~  158 (485)
                                                   |++++|+||+++++||.||+||++|++|+|.|||+++.+|+.+.+++|+++
T Consensus       597 -----------------------------Dlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~  647 (718)
T PRK08043        597 -----------------------------DIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIK  647 (718)
T ss_pred             -----------------------------CEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEc
Confidence                                         999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceEEEEEEEcCCcCCCHHHHHHhhccc-chhh------HhhhhhhcCCCCCCCcc
Q psy5016         159 PDERMGEEVGISIKLKENAKLNAYEDKSISSDY-HEFE------TMYDSIMAHPNRTTPYY  212 (485)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~------~~~~~I~~~~n~~l~~~  212 (485)
                      +++..|+.+++++.   +...+.++++++|+++ ...+      ...++++.+.++++...
T Consensus       648 ~~~~~ge~~v~~~~---~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~  705 (718)
T PRK08043        648 SDASKGEALVLFTT---DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFV  705 (718)
T ss_pred             cCCCCCceEEEEEc---CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHH
Confidence            99888888877663   3456778899998776 3322      22455666666655543

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.79  E-value=1.2e-18  Score=186.28  Aligned_cols=140  Identities=33%  Similarity=0.483  Sum_probs=126.2

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |++++.++|+|+++.++++|++|||+|+|++++.||++++..+++.+. ++||+||                        
T Consensus       335 ~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~-~~~~~TG------------------------  389 (508)
T TIGR02262       335 PVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQ-GEWTRSG------------------------  389 (508)
T ss_pred             CCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhh-cCceecc------------------------
Confidence            999999999999999999999999999999999999999999888774 7999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++++|+++++||.||+|+++|.+|+|.+||+.|.+|++|.++++++.++...++++.+++++.
T Consensus       390 -------------D~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~  456 (508)
T TIGR02262       390 -------------DKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLR  456 (508)
T ss_pred             -------------ceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999998887778888998887


Q ss_pred             CCcC---CCHHHHHHhhcccc
Q psy5016         175 ENAK---LNAYEDKSISSDYH  192 (485)
Q Consensus       175 ~~~~---~~~~~l~~~l~~~~  192 (485)
                      ++..   ...+++++.++++.
T Consensus       457 ~~~~~~~~~~~~i~~~~~~~l  477 (508)
T TIGR02262       457 PGQDIDTALETELKEHVKDRL  477 (508)
T ss_pred             CCCccccccHHHHHHHHHHhc
Confidence            6543   23566777776543

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PLN02479 acetate-CoA ligase

Probab=99.78  E-value=6.1e-19  Score=191.58  Aligned_cols=139  Identities=35%  Similarity=0.538  Sum_probs=120.7

Q ss_pred             ccCCcE-EEEEc-CCCccCCCC--CceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcch
Q psy5016          15 SSSSFQ-AKVVD-HNNRIVPFG--TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKP   90 (485)
Q Consensus        15 ~~~~~~-~~i~d-~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~   90 (485)
                      +.+++. ++|+| +++++++.+  ++|||+++|+.++.|||++++.|++.|. ++||+||                    
T Consensus       377 ~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TG--------------------  435 (567)
T PLN02479        377 RYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-NGWFHSG--------------------  435 (567)
T ss_pred             CcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc-CCceecc--------------------
Confidence            666665 88999 458888764  6899999999999999999999999885 8999999                    


Q ss_pred             hhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEE
Q psy5016          91 LQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  170 (485)
Q Consensus        91 ~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  170 (485)
                                       |+++++++|+++++||.||+||++|++|+|.|||.+|.+||.|.+++|++.++...++.++++
T Consensus       436 -----------------Dl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  498 (567)
T PLN02479        436 -----------------DLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAF  498 (567)
T ss_pred             -----------------eeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEE
Confidence                             999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEEcCCcC-----CCHHHHHHhhccc
Q psy5016         171 IKLKENAK-----LNAYEDKSISSDY  191 (485)
Q Consensus       171 ~~~~~~~~-----~~~~~l~~~l~~~  191 (485)
                      +++.++..     ...++|.++++.+
T Consensus       499 v~~~~~~~~~~~~~~~~~l~~~~~~~  524 (567)
T PLN02479        499 VTLKPGVDKSDEAALAEDIMKFCRER  524 (567)
T ss_pred             EEecCcccccchhhhHHHHHHHHHhh
Confidence            99886642     2234566666544

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.78  E-value=1.7e-18  Score=184.39  Aligned_cols=140  Identities=24%  Similarity=0.196  Sum_probs=122.4

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCccccccccc---CCCceecCcccccchhhhHHHHhhhcchh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG---PDRWLRTGRYKKTSFLYSAMAIRRKLKPL   91 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~---~~~~~~tg~~~~~~~~~~~~~~~~~~~~~   91 (485)
                      |.++++++|+|++|.+++.|+.|||+++|++++.|||+++..+.+.|.   +.+||+||                     
T Consensus       323 ~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tG---------------------  381 (503)
T PRK04813        323 AKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTG---------------------  381 (503)
T ss_pred             cCCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECC---------------------
Confidence            999999999999999999999999999999999999999999988763   23599999                     


Q ss_pred             hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016          92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  171 (485)
Q Consensus        92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (485)
                                      |++++ ++|++++.||.||+|+++|++|+|.+||+.+.+||.|.+++|++.+++..++.+.+++
T Consensus       382 ----------------D~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v  444 (503)
T PRK04813        382 ----------------DAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYV  444 (503)
T ss_pred             ----------------ceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEE
Confidence                            99999 8999999999999999999999999999999999999999999988887788999999


Q ss_pred             EEcCCcCCCH----HHHHHhhcccc
Q psy5016         172 KLKENAKLNA----YEDKSISSDYH  192 (485)
Q Consensus       172 ~~~~~~~~~~----~~l~~~l~~~~  192 (485)
                      ++.++.....    ++++++++++.
T Consensus       445 ~~~~~~~~~~~~~~~~l~~~~~~~l  469 (503)
T PRK04813        445 VPKEEDFEREFELTKAIKKELKERL  469 (503)
T ss_pred             EeccccccccchhHHHHHHHHHhhC
Confidence            8876422111    34666665443

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.78  E-value=2.7e-18  Score=183.42  Aligned_cols=140  Identities=41%  Similarity=0.683  Sum_probs=130.5

Q ss_pred             ccCCcEEEEEcCCCccCCC--CCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPF--GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+|++.++|+|+++++++.  |+.|||+++|++++.||+++++.+++.+. ++||+||                      
T Consensus       344 ~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~~~~tG----------------------  400 (521)
T PRK06187        344 PLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GGWLHTG----------------------  400 (521)
T ss_pred             ccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh-CCceecc----------------------
Confidence            8999999999999999999  99999999999999999999998888885 6799999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |+++++++|++++.||.+|+++++|.+|+|.+||+.|.+++.|.++++++++++..++.+.++++
T Consensus       401 ---------------D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  465 (521)
T PRK06187        401 ---------------DVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVV  465 (521)
T ss_pred             ---------------ceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEE
Confidence                           99999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             EcCCcCCCHHHHHHhhcccc
Q psy5016         173 LKENAKLNAYEDKSISSDYH  192 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~~  192 (485)
                      ++++...+..+++++++++.
T Consensus       466 ~~~~~~~~~~~l~~~l~~~l  485 (521)
T PRK06187        466 LKPGATLDAKELRAFLRGRL  485 (521)
T ss_pred             ECCCCCCCHHHHHHHHHHhc
Confidence            98877778888888886543

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.78  E-value=2e-18  Score=186.26  Aligned_cols=138  Identities=36%  Similarity=0.517  Sum_probs=123.9

Q ss_pred             cEEEEEcC-CCccCCC-C-CceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhhh
Q psy5016          19 FQAKVVDH-NNRIVPF-G-TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQ   95 (485)
Q Consensus        19 ~~~~i~d~-~~~~~~~-g-~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~   95 (485)
                      ..++|+|+ ++.+++. | +.|||+|+|+.++.|||+++..+.+.|. ++||+||                         
T Consensus       368 ~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TG-------------------------  421 (545)
T PRK08162        368 EGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA-GGWFHTG-------------------------  421 (545)
T ss_pred             ceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh-CCCcccC-------------------------
Confidence            46788895 5888876 3 4699999999999999999999998884 7899999                         


Q ss_pred             hhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcC
Q psy5016          96 QQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  175 (485)
Q Consensus        96 ~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  175 (485)
                                  |++++++||+++++||.||++|++|++|+|.|||+.|..||+|.+++|++.+++..++.+.+++++++
T Consensus       422 ------------Dl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~  489 (545)
T PRK08162        422 ------------DLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKD  489 (545)
T ss_pred             ------------ceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCC
Confidence                        99999999999999999999999999999999999999999999999999998888899999999988


Q ss_pred             CcCCCHHHHHHhhcccchh
Q psy5016         176 NAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       176 ~~~~~~~~l~~~l~~~~~~  194 (485)
                      +...+.++++++|+++...
T Consensus       490 ~~~~~~~~l~~~~~~~l~~  508 (545)
T PRK08162        490 GASATEEEIIAHCREHLAG  508 (545)
T ss_pred             CCCCCHHHHHHHHHHhccc
Confidence            7667888888888765433

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.77  E-value=4e-18  Score=190.22  Aligned_cols=141  Identities=26%  Similarity=0.301  Sum_probs=114.3

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCCC--ceEEEEEcc--ccccccCCCccccccccc------CCCceecCcccccchh
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFGT--PGELLIRGH--CNMLGYWEDEQKTKETIG------PDRWLRTGRYKKTSFL   78 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g~--~Gel~i~~~--~~~~gy~~~~~~~~~~~~------~~~~~~tg~~~~~~~~   78 (485)
                      .+++  |+||++++|+|++|++++.|+  .|||+|+++  +...+||+++. .+..|.      +++||+||        
T Consensus       524 ~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tG--------  594 (728)
T PLN03052        524 FAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHG--------  594 (728)
T ss_pred             CCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecC--------
Confidence            3444  999999999999999999996  599999864  33467887642 222221      12255555        


Q ss_pred             hhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHH-cCCCcceEEEEE
Q psy5016          79 YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAYAYG  157 (485)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~-~~~~v~~~~~~~  157 (485)
                                                   |++++++||+++|+||.||+||++|+||+|.|||++|. .||.|.|++|++
T Consensus       595 -----------------------------Dl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg  645 (728)
T PLN03052        595 -----------------------------DIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIG  645 (728)
T ss_pred             -----------------------------ceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEe
Confidence                                         99999999999999999999999999999999999995 899999999999


Q ss_pred             eeCCCCC-ceEEEEEEEc--CCcCCCHHHHHHhhc
Q psy5016         158 VPDERMG-EEVGISIKLK--ENAKLNAYEDKSISS  189 (485)
Q Consensus       158 ~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~  189 (485)
                      ++++..| +.++++|+++  ++...+.++|+++++
T Consensus       646 ~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~  680 (728)
T PLN03052        646 VPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFN  680 (728)
T ss_pred             eecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHH
Confidence            9998776 8899999998  565566677776654

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.77  E-value=3.4e-18  Score=184.59  Aligned_cols=140  Identities=26%  Similarity=0.364  Sum_probs=125.9

Q ss_pred             ccCCcEEEEEcCCCccCCCC--CceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFG--TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |.++++++|+|++|++++.+  ..|||+++|+.++.|||++.   .+.+..++||+||                      
T Consensus       361 ~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TG----------------------  415 (542)
T PRK06018        361 PPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTG----------------------  415 (542)
T ss_pred             CCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcC----------------------
Confidence            88999999999999988864  67999999999999999842   3445568999999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |+++++++|+++++||.+|+|+++|++|+|.|||+++..||.|.+++|++.+++..++++.++|+
T Consensus       416 ---------------Dl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~  480 (542)
T PRK06018        416 ---------------DVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQ  480 (542)
T ss_pred             ---------------CEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEE
Confidence                           99999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             EcCCcCCCHHHHHHhhcccchh
Q psy5016         173 LKENAKLNAYEDKSISSDYHEF  194 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~~~~  194 (485)
                      +.++...+.+++.++++.+...
T Consensus       481 ~~~~~~~~~~~l~~~~~~~l~~  502 (542)
T PRK06018        481 LKPGETATREEILKYMDGKIAK  502 (542)
T ss_pred             eCCCCCCCHHHHHHHHHhhCcc
Confidence            9888778888888888765433

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.77  E-value=2e-18  Score=187.82  Aligned_cols=123  Identities=37%  Similarity=0.586  Sum_probs=109.7

Q ss_pred             CcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCccccccccc-----------CCCceecCcccccchhhhHHHHh
Q psy5016          18 SFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-----------PDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus        18 ~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      +.+++|+|++ +++++.|+.|||+|+|+.+|.|||++++.|++.|.           .++||+||               
T Consensus       378 ~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TG---------------  442 (578)
T PRK05850        378 SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG---------------  442 (578)
T ss_pred             CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeecc---------------
Confidence            4789999955 78999999999999999999999999999998884           25799999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  165 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~  165 (485)
                                            |+++++ ||+++|+||.||+||++|++|+|.|||++|.+||++ ++++++++++ .++
T Consensus       443 ----------------------Dl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~  497 (578)
T PRK05850        443 ----------------------DLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTE  497 (578)
T ss_pred             ----------------------ceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-Cce
Confidence                                  999998 999999999999999999999999999999999985 5888889887 678


Q ss_pred             eEEEEEEEcCCcCCC
Q psy5016         166 EVGISIKLKENAKLN  180 (485)
Q Consensus       166 ~~~~~~~~~~~~~~~  180 (485)
                      .++++|+++++...+
T Consensus       498 ~~~a~v~~~~~~~~~  512 (578)
T PRK05850        498 KLVAIIELKKRGDSD  512 (578)
T ss_pred             EEEEEEEeccccCcc
Confidence            899999988765433

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.77  E-value=2.8e-18  Score=197.46  Aligned_cols=157  Identities=16%  Similarity=0.190  Sum_probs=123.9

Q ss_pred             CcCcc--ccCCc-EEEEE-----------cCCC--ccCCCCCceEEEEEccccccccCCCcccc--ccccc-CCCceecC
Q psy5016          10 QFSTL--SSSSF-QAKVV-----------DHNN--RIVPFGTPGELLIRGHCNMLGYWEDEQKT--KETIG-PDRWLRTG   70 (485)
Q Consensus        10 ~~~~~--~~~~~-~~~i~-----------d~~~--~~~~~g~~Gel~i~~~~~~~gy~~~~~~~--~~~~~-~~~~~~tg   70 (485)
                      +.+++  |+|++ +++|.           |++|  +.++.|++|||+++++.    |++ ++.+  +..|. .++||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~----~~~-p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARG----PID-PTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCC----CCC-hhhhhHhcccccCCEEEecc
Confidence            44556  99997 66653           5667  67899999999999885    333 4332  22342 48999999


Q ss_pred             cccccchhhhHHHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCc
Q psy5016          71 RYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV  150 (485)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v  150 (485)
                                                           |+|++|+||+++|+||.||+||++|++|+|.|||++|.+||.|
T Consensus       842 -------------------------------------Dlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V  884 (994)
T PRK07868        842 -------------------------------------YLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGV  884 (994)
T ss_pred             -------------------------------------ceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCe
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcCCcCCCHHHHHHhhcccchhhH------hhhhhhcCCCCCCC
Q psy5016         151 LEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFET------MYDSIMAHPNRTTP  210 (485)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~~~~I~~~~n~~l~  210 (485)
                      .+|+|++++++. ++.++++|+++++...+.++|+++|++ ...+.      ..++++.+.+.+..
T Consensus       885 ~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~  948 (994)
T PRK07868        885 DLAVTYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPT  948 (994)
T ss_pred             eEEEEEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEe
Confidence            999999998876 688999999998877888999999874 32222      23455555554443

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.77  E-value=1.2e-18  Score=191.26  Aligned_cols=119  Identities=18%  Similarity=0.291  Sum_probs=104.4

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhh
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK   87 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~   87 (485)
                      ..+++  |+|+++++|+|++       ..|||+|+|+.+|.|||++|+.|++.|..||||+||                 
T Consensus       390 ~~~svG~p~pg~~v~i~d~~-------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TG-----------------  445 (614)
T PRK08180        390 RAGNIGLPAPGCEVKLVPVG-------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSG-----------------  445 (614)
T ss_pred             CCCcccCccCCcEEEEecCC-------CCcEEEEecCccchhhcCChhHhHhhcccCCceecc-----------------
Confidence            34555  9999999999863       359999999999999999999999999889999999                 


Q ss_pred             cchhhhhhhhhcccccccccceEEE----ecCccEEEeeccCceEE-eCcEEeC--hHHHHHHHHcCCCcceEEEEEeeC
Q psy5016          88 LKPLQQQQQQQIGFFYSLVSDQFVL----REDGYGQVVGRIKDMII-RGGENIY--PKEIEEFIQTHPNVLEAYAYGVPD  160 (485)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~D~~~~----~~~g~~~~~gR~~~~i~-~~g~~~~--~~~ie~~~~~~~~v~~~~~~~~~~  160 (485)
                                          |+|++    |++|+++|+||+||+|+ .+|++|+  |.|||.++.+||.|.+++|+|+++
T Consensus       446 --------------------Dlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~  505 (614)
T PRK08180        446 --------------------DAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR  505 (614)
T ss_pred             --------------------ceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC
Confidence                                99999    46899999999999888 6898766  789999999999999999999987


Q ss_pred             CCCCceEEEEEEEcCC
Q psy5016         161 ERMGEEVGISIKLKEN  176 (485)
Q Consensus       161 ~~~~~~~~~~~~~~~~  176 (485)
                      +    .++++|+++++
T Consensus       506 ~----~~~a~V~~~~~  517 (614)
T PRK08180        506 D----EIGLLVFPNLD  517 (614)
T ss_pred             C----ceEEEEEcCHH
Confidence            5    47788887754

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.76  E-value=9.8e-19  Score=192.25  Aligned_cols=115  Identities=17%  Similarity=0.229  Sum_probs=100.0

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhc
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      .+++  |+||++++|+       +.|++|||+|+|+++|.|||++|+.|++.|..||||+||                  
T Consensus       403 ~~svG~p~pg~~v~i~-------~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TG------------------  457 (624)
T PRK12582        403 VGLIGLPLPGVELKLA-------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLG------------------  457 (624)
T ss_pred             CCCCCcCCCCcEEEEc-------cCCCceEEEEECCcccccccCCccchhhhcCccCCcccc------------------
Confidence            4555  9999999985       457889999999999999999999999999889999999                  


Q ss_pred             chhhhhhhhhcccccccccceEEE-e---cCccEEEeeccCceEE-eCcEEeChHHHH--HHHHcCCCcceEEEEEeeCC
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVL-R---EDGYGQVVGRIKDMII-RGGENIYPKEIE--EFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~-~---~~g~~~~~gR~~~~i~-~~g~~~~~~~ie--~~~~~~~~v~~~~~~~~~~~  161 (485)
                                         |++++ |   ++|+++|+||.||+|+ .+|++|+|.+||  .++.+||.|.+++|+|++++
T Consensus       458 -------------------Dlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~  518 (624)
T PRK12582        458 -------------------DAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRA  518 (624)
T ss_pred             -------------------ceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCC
Confidence                               99998 4   5699999999999999 589999998885  68889999999999999766


Q ss_pred             CCCceEEEEEEE
Q psy5016         162 RMGEEVGISIKL  173 (485)
Q Consensus       162 ~~~~~~~~~~~~  173 (485)
                      .    +++.|++
T Consensus       519 ~----~g~lv~p  526 (624)
T PRK12582        519 F----IGLLAWP  526 (624)
T ss_pred             c----EEEEEec
Confidence            5    4455443

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.76  E-value=4.1e-18  Score=180.03  Aligned_cols=131  Identities=26%  Similarity=0.426  Sum_probs=116.7

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++|+|           |||+|+|+.++.|||++++.+.... .++||+||                        
T Consensus       294 ~~~~~~~~i~~-----------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TG------------------------  337 (458)
T PRK09029        294 PLPGREVKLVD-----------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATR------------------------  337 (458)
T ss_pred             CCCCCEEEEeC-----------CEEEEecCceeeeeecCcccccccc-CCCccCCC------------------------
Confidence            88899988876           8999999999999999988776544 48999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |+++++ ||++++.||.||+||++|++|+|.|||+.|.+||+|.+++|++++++..++.+.++|+++
T Consensus       338 -------------D~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~  403 (458)
T PRK09029        338 -------------DRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESD  403 (458)
T ss_pred             -------------CcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcC
Confidence                         999999 999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcCCCHHHHHHhhcccchhhHh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFETM  197 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~~~  197 (485)
                      .  ..+.++|+++|+++...+..
T Consensus       404 ~--~~~~~~l~~~~~~~l~~~~~  424 (458)
T PRK09029        404 S--EAAVVNLAEWLQDKLARFQQ  424 (458)
T ss_pred             c--ccCHHHHHHHHHhhchhccC
Confidence            3  35778899999876555433

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.76  E-value=6.7e-18  Score=181.01  Aligned_cols=144  Identities=32%  Similarity=0.445  Sum_probs=127.9

Q ss_pred             cccCCcEEEEEcCCCccCCCCCc--eEEEEEccccccccCCCccccccccc---CCCceecCcccccchhhhHHHHhhhc
Q psy5016          14 LSSSSFQAKVVDHNNRIVPFGTP--GELLIRGHCNMLGYWEDEQKTKETIG---PDRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        14 ~~~~~~~~~i~d~~~~~~~~g~~--Gel~i~~~~~~~gy~~~~~~~~~~~~---~~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      .+.++..++|+|++|++++.|+.  |+|+ +++.++.|||+++..+++.|.   +++||+||                  
T Consensus       353 ~~~~~~~~~i~~~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TG------------------  413 (533)
T PRK07798        353 RFTIGPRTVVLDEDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPG------------------  413 (533)
T ss_pred             ccCCCceEEEECCCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcC------------------
Confidence            37788999999999999999988  6665 556789999999999988874   24699999                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (485)
                                         |++++++||+++++||.||+++++|++|+|.+||++|.++|.|.++++++.++...++.+.
T Consensus       414 -------------------D~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~  474 (533)
T PRK07798        414 -------------------DRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVV  474 (533)
T ss_pred             -------------------cEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEE
Confidence                               9999999999999999999999999999999999999999999999999999888889999


Q ss_pred             EEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         169 ISIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      ++++++++...+.++|+++++++...+
T Consensus       475 ~~v~~~~~~~~~~~~l~~~l~~~l~~~  501 (533)
T PRK07798        475 AVVQLREGARPDLAELRAHCRSSLAGY  501 (533)
T ss_pred             EEEEECCCCCCCHHHHHHHHhhhcccC
Confidence            999998877778889999988764443

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.74  E-value=1.3e-17  Score=182.24  Aligned_cols=153  Identities=24%  Similarity=0.266  Sum_probs=121.5

Q ss_pred             EEcCCC--ccCCCCCceEEE--EEccccccccCCCccccccccc------CCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          23 VVDHNN--RIVPFGTPGELL--IRGHCNMLGYWEDEQKTKETIG------PDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        23 i~d~~~--~~~~~g~~Gel~--i~~~~~~~gy~~~~~~~~~~~~------~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      +.|.++  .+++.|++|||+  |++++++.|| +++..+.+.+.      .++||+||                      
T Consensus       388 i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG----------------------  444 (600)
T PRK08279        388 VRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG----------------------  444 (600)
T ss_pred             eeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec----------------------
Confidence            444443  368899999998  7799999999 88888877652      36899999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC-CceEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GEEVGISI  171 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~  171 (485)
                                     |++++++||++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++++++.. +....+++
T Consensus       445 ---------------Dlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~v  509 (600)
T PRK08279        445 ---------------DLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAI  509 (600)
T ss_pred             ---------------ceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEE
Confidence                           99999999999999999999999999999999999999999999999999987653 45556666


Q ss_pred             EEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCccc
Q psy5016         172 KLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       172 ~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~  213 (485)
                      +..++...+.++++++|+++...+..      .++++.+.++++....
T Consensus       510 v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~  557 (600)
T PRK08279        510 VLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVD  557 (600)
T ss_pred             EecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHH
Confidence            77666677889999999876554433      3445555555544433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.73  E-value=2.6e-17  Score=192.79  Aligned_cols=158  Identities=22%  Similarity=0.242  Sum_probs=125.1

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhh
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK   87 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~   87 (485)
                      ..+++  |+|++++++++.++    .|+.|||+++|++++.|||+++..+......+|||+||                 
T Consensus       957 ~~~~vG~p~~g~~~~~~~~~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG----------------- 1015 (1140)
T PRK06814        957 KAGTVGRLLPGIEYRLEPVPG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTG----------------- 1015 (1140)
T ss_pred             CCCcCCccCCCCeEEEeecCC----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecC-----------------
Confidence            34455  99999999987654    36789999999999999999765433222358999999                 


Q ss_pred             cchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          88 LKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                          |++++|+||+++++||.||+||++|++|+|.|||++|.+|+.+.+++|++++++..|+.+
T Consensus      1016 --------------------Dl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~ 1075 (1140)
T PRK06814       1016 --------------------DIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERI 1075 (1140)
T ss_pred             --------------------CEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceE
Confidence                                999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEEcCCcCCCHHHHHHhhccc-chhh------HhhhhhhcCCCCCCCc
Q psy5016         168 GISIKLKENAKLNAYEDKSISSDY-HEFE------TMYDSIMAHPNRTTPY  211 (485)
Q Consensus       168 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~------~~~~~I~~~~n~~l~~  211 (485)
                      .+++.   +...+.+++.++++++ ...+      ...++++.++++++..
T Consensus      1076 ~~~~~---~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r 1123 (1140)
T PRK06814       1076 ILLTT---ASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDY 1123 (1140)
T ss_pred             EEEEc---CCCcCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcH
Confidence            76654   3345678888888754 2222      1234455555555543

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.72  E-value=5e-17  Score=175.54  Aligned_cols=123  Identities=29%  Similarity=0.450  Sum_probs=106.1

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++|++++.|+.|||+++|+.++.|||+++... +.+..++||+||                        
T Consensus       365 ~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g~~~TG------------------------  419 (545)
T PRK07768        365 PLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADGWLDTG------------------------  419 (545)
T ss_pred             CCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCc-ccccCCCeeecc------------------------
Confidence            9999999999999999999999999999999999999865433 334457899999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEee--CCCCCceEEEEEE
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP--DERMGEEVGISIK  172 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~  172 (485)
                                   |+++++++|+++++||.||+||++|++|+|.|||+.|.+||+|.+++|+++.  +...++.+.+++.
T Consensus       420 -------------Dl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~  486 (545)
T PRK07768        420 -------------DLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVE  486 (545)
T ss_pred             -------------ceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEE
Confidence                         9999999999999999999999999999999999999999999998887764  4444555655554


Q ss_pred             EcC
Q psy5016         173 LKE  175 (485)
Q Consensus       173 ~~~  175 (485)
                      ..+
T Consensus       487 ~~~  489 (545)
T PRK07768        487 SNA  489 (545)
T ss_pred             ecc
Confidence            443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.72  E-value=4.4e-17  Score=170.46  Aligned_cols=133  Identities=29%  Similarity=0.438  Sum_probs=115.5

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+++++++|.+++.     +++|||+++|++++.|||+++..+...+ .++||+||                        
T Consensus       276 ~~~~~~~~i~~~~~-----~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TG------------------------  325 (436)
T TIGR01923       276 PLAGREIKIKVDNK-----EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTG------------------------  325 (436)
T ss_pred             cCCCcEEEEEeCCC-----CCceEEEEECCccchhhCCChhhhhhhh-cCCCeecc------------------------
Confidence            89999999843322     2779999999999999999888776655 47999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||++++.||.+|++|++|++|++.+||.+|..+++|.++++++.++...++.+.++++++
T Consensus       326 -------------D~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  392 (436)
T TIGR01923       326 -------------DIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSE  392 (436)
T ss_pred             -------------ceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEEC
Confidence                         9999999999999999999999999999999999999999999999999998887788888988887


Q ss_pred             CCcCCCHHHHHHhhcccc
Q psy5016         175 ENAKLNAYEDKSISSDYH  192 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~  192 (485)
                      ++  .+..++.++++++.
T Consensus       393 ~~--~~~~~l~~~l~~~l  408 (436)
T TIGR01923       393 SD--ISQAKLIAYLTEKL  408 (436)
T ss_pred             CC--CCHHHHHHHHHHhh
Confidence            53  56777877776543

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.68  E-value=9.8e-17  Score=166.09  Aligned_cols=104  Identities=36%  Similarity=0.441  Sum_probs=97.9

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCC------C--ceecCcccccchhhhHHHHhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD------R--WLRTGRYKKTSFLYSAMAIRR   86 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~------~--~~~tg~~~~~~~~~~~~~~~~   86 (485)
                      |+|+++++|+|+++++++.|+.|||+|+|+.++.||+++++.+++.|..+      +  ||+||                
T Consensus       297 ~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TG----------------  360 (408)
T TIGR01733       297 PLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTG----------------  360 (408)
T ss_pred             ccCCceEEEECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECC----------------
Confidence            89999999999999999999999999999999999999999998887533      2  89999                


Q ss_pred             hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEE
Q psy5016          87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA  155 (485)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~  155 (485)
                                           |+++++++|++++.||.||+|+++|++|+|.+||++|..|+.|.+++|
T Consensus       361 ---------------------Dl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       361 ---------------------DLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ---------------------ceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence                                 999999999999999999999999999999999999999999998875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.67  E-value=2.8e-15  Score=158.33  Aligned_cols=170  Identities=11%  Similarity=-0.014  Sum_probs=108.8

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCccCccccCccccc--CCcEEEE-cCC--CCCCCCCceEEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGL--YHFKKWM-NPK--FSTTTRKVALTWP  362 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~s~G~p~--pg~~v~I-d~~--~~~~~g~~Gel~v  362 (485)
                      ++|+++++++.+++.+.|+    ..+++.||+||++...  .. ....|..+  +.+.++| |+.  .++++|+.|||++
T Consensus       211 ~gGE~l~~~~r~~ie~~~g----~~v~~~YG~TE~~~~~--~c-~~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvv  283 (445)
T TIGR03335       211 VGGESFADESRNYVEELWG----CEVYNTYGSTEGTMCG--EC-QAVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVL  283 (445)
T ss_pred             EcCCCCCHHHHHHHHHHhC----CcEEecCChhhhhheE--Ee-cCCCCccccCCceEEEEEcCCCCCCCcCCCceEEEE
Confidence            8899999999988888887    4567999999974211  11 11234444  4567888 764  3489999999999


Q ss_pred             ecCCCCcccccccCcccccccccccCCCCCeEecCceEEEe--cC---C----eEEEEecCCCeEEECcEeeChHHHHHH
Q psy5016         363 NSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLR--ED---G----YGQVVGRIKDMIIRGGENIYPKEIEEF  433 (485)
Q Consensus       363 ~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d--~~---G----~l~i~GR~~d~I~~~G~~v~p~eIE~~  433 (485)
                      ++.   ..       +.+...++..     .|+|||++++.  +.   |    .+..+||.||+++++|.+|+|.+||++
T Consensus       284 T~L---~~-------~~~r~~~Pli-----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~  348 (445)
T TIGR03335       284 TTL---LK-------PGERCGSLLI-----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERA  348 (445)
T ss_pred             Eec---CC-------CCccCCceEE-----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHH
Confidence            987   11       1001111111     79999999973  22   2    244579999999999999999999999


Q ss_pred             HHcC---CCccEEEEEEEeCC-CCCcEEEEEEEEcCCCCCCHHHHHHHHH
Q psy5016         434 IQTH---PNVLEAYAYGVPDE-RMGEEVGISIKLKENAKLNADDIRTFCK  479 (485)
Q Consensus       434 l~~~---~~V~ea~vv~~~~~-~~g~~~~a~vv~~~~~~~~~~~l~~~l~  479 (485)
                      |.++   +++....-+.+... .....+.+.|...+....+.+++.+.+.
T Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~  398 (445)
T TIGR03335       349 VFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDKDNCSIHDIQENFT  398 (445)
T ss_pred             HhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCcccchHHHHHHHHH
Confidence            9995   55543332333222 2223455556665543333344444333

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.66  E-value=5.1e-16  Score=171.08  Aligned_cols=203  Identities=14%  Similarity=0.041  Sum_probs=151.8

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hc------cchhhhH----------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KS------MQGWAKT----------------  283 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl------~~~~~~~----------------  283 (485)
                      .+-.+++||||+||.||.+..+|...........+.+.++..+..... ++      +..|+..                
T Consensus       366 ~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~  445 (642)
T COG1020         366 DALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVD  445 (642)
T ss_pred             CCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCC
Confidence            455667999999999999999999888755555444444321110000 00      0001100                


Q ss_pred             ------------------------------------------hhhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         284 ------------------------------------------LSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       284 ------------------------------------------~~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                -..+++|++++..+.+.+......  ...+.+.||+||
T Consensus       446 ~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~--~~~l~~~ygpTe  523 (642)
T COG1020         446 PAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAAL--ARRLLNLYGPTE  523 (642)
T ss_pred             HHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccc--cceEeeccCccH
Confidence                                                      001278899999999888776542  245579999999


Q ss_pred             CCCC----CccCcc--ccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016         322 KMFK----DVKNYL--ITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       322 t~~~----~~~~~~--~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      +...    ......  ...+|+|+++..+.| |+ ...+|.|..||+++.|.   ++.+||+ +++.+++.|.   .+ +
T Consensus       524 ~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~---~~a~gy~~~p~lt~~~f~---~~-~  596 (642)
T COG1020         524 ATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGL---GLALGYLNRPDLTAERFI---AL-R  596 (642)
T ss_pred             HhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCc---chhhhhcCChhhhHHHhh---hc-c
Confidence            5321    111111  468999999999999 74 67799999999999999   9999999 9999999882   33 4


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      +|+|||+++++.||.+.+.||.|+++|++|++|.+.|||..+.++|
T Consensus       597 ~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         597 LYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            8999999999999999999999999999999999999999998875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.61  E-value=3e-15  Score=152.72  Aligned_cols=87  Identities=13%  Similarity=0.039  Sum_probs=80.3

Q ss_pred             CCCCeEecCceEEE-ecCCeEEEEecCCCeEEECc---EeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016         389 SAGRSIFEKDQFVL-REDGYGQVVGRIKDMIIRGG---ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  464 (485)
Q Consensus       389 ~~g~~~~TGD~~~~-d~~G~l~i~GR~~d~I~~~G---~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~  464 (485)
                      .+| ||+|||+|++ |++|+|+|+||.+     +|   +||+|. ||++|.+||+|.+|+||+++++..|+.++|||++.
T Consensus       207 ~dg-W~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~  279 (365)
T PRK09188        207 SRI-WLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE  279 (365)
T ss_pred             cCc-EEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence            578 9999999998 7999999999998     88   899999 99999999999999999999999999999999987


Q ss_pred             CCCCCCHHHHHHHHHhhCCC
Q psy5016         465 ENAKLNADDIRTFCKGKVSK  484 (485)
Q Consensus       465 ~~~~~~~~~l~~~l~~~l~~  484 (485)
                      +  ..+.++|+++|+++|++
T Consensus       280 ~--~~~~~el~~~l~~~L~~  297 (365)
T PRK09188        280 L--PADEKSLRARLAGAKPP  297 (365)
T ss_pred             C--CCCHHHHHHHHHhhchh
Confidence            4  46788999999999874

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.59  E-value=1.6e-14  Score=150.80  Aligned_cols=117  Identities=23%  Similarity=0.281  Sum_probs=102.9

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|++++++.++      .+++|||++++                   .++||+||                        
T Consensus       266 p~~~~~~~~~~~------~~~~gel~v~~-------------------~~~~~~TG------------------------  296 (414)
T PRK08308        266 PLPHVSVSAGSD------ENAPEEIVVKM-------------------GDKEIFTK------------------------  296 (414)
T ss_pred             cCCCeEEEEecC------CCCCceEEEEc-------------------CCceEECC------------------------
Confidence            999999998764      35679999974                   26799999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.||+||++|++|+|.|||+++.++|+|.+++|++++++..++.+.++++.+
T Consensus       297 -------------Dl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~  363 (414)
T PRK08308        297 -------------DLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISH  363 (414)
T ss_pred             -------------ceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999999899999988876


Q ss_pred             CCcCCCHHHHHHhhcccchhh
Q psy5016         175 ENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +  ..+.++++++|+++...+
T Consensus       364 ~--~~~~~~l~~~l~~~l~~~  382 (414)
T PRK08308        364 E--EIDPVQLREWCIQHLAPY  382 (414)
T ss_pred             C--CCCHHHHHHHHHHhCccc
Confidence            4  467788888887665443

>PTZ00297 pantothenate kinase; Provisional

Probab=99.57  E-value=1.6e-14  Score=168.50  Aligned_cols=122  Identities=11%  Similarity=-0.004  Sum_probs=90.8

Q ss_pred             ccccccCCCCCCCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCC
Q psy5016         314 DVEYEFQEKMFKDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAG  391 (485)
Q Consensus       314 ~~~YG~TEt~~~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g  391 (485)
                      +.+||+||+..... .......|+|+|+++++| |. +..-+ +..|||++++.         -+++.|++.+     +|
T Consensus       782 ~~g~glTE~~~~~~-~~~~~~~G~PlpgvEvKI~~~~E~~~~-~~~GEIlvr~~---------kdpe~T~e~~-----~g  845 (1452)
T PTZ00297        782 CYVPCLREVFFLPS-EGVFCVDGTPAPSLQVDLEPFDEPSDG-AGIGQLVLAKK---------GEPRRTLPIA-----AQ  845 (1452)
T ss_pred             EEecceEEeeeecC-CCCcccCCeecCceEEEEcccccccCC-CCCCeEEEEEC---------CChHHHHHhh-----Cc
Confidence            35788999532211 111223499999999999 43 21112 23599999754         1677777633     56


Q ss_pred             CeEecCceEEEecCCeEEEEecCCCeEE-ECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         392 RSIFEKDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~-~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                       |+         +||+|.|+||+||+|| .+|++|+|+.||+++..+|.|.+++|+|-..+    .++|+|+++.
T Consensus       846 -W~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~  906 (1452)
T PTZ00297        846 -WK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNR  906 (1452)
T ss_pred             -Cc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCH
Confidence             75         6899999999999999 79999999999999999999999999997644    3889888763

>KOG1179|consensus

Probab=99.53  E-value=4.4e-14  Score=145.52  Aligned_cols=136  Identities=23%  Similarity=0.277  Sum_probs=111.8

Q ss_pred             EcCCCc--cCCCCCceEEEE--E--ccc-cccccCCCcccccccc------cCCCceecCcccccchhhhHHHHhhhcch
Q psy5016          24 VDHNNR--IVPFGTPGELLI--R--GHC-NMLGYWEDEQKTKETI------GPDRWLRTGRYKKTSFLYSAMAIRRKLKP   90 (485)
Q Consensus        24 ~d~~~~--~~~~g~~Gel~i--~--~~~-~~~gy~~~~~~~~~~~------~~~~~~~tg~~~~~~~~~~~~~~~~~~~~   90 (485)
                      +|++|.  +|++||||.|+-  .  .|. -|.||.++...|++.+      .+|-||.||                    
T Consensus       434 Rd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tG--------------------  493 (649)
T KOG1179|consen  434 RDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTG--------------------  493 (649)
T ss_pred             ecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeC--------------------
Confidence            556653  888999998773  2  342 3899999777776655      347788888                    


Q ss_pred             hhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE-E
Q psy5016          91 LQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG-I  169 (485)
Q Consensus        91 ~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~-~  169 (485)
                                       |+-.+|+.|++||.+|+.|+.+++||||++.|+|.+|..+..+.|+.|||+..+....+.+ |
T Consensus       494 -----------------DlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMA  556 (649)
T KOG1179|consen  494 -----------------DLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMA  556 (649)
T ss_pred             -----------------cEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceE
Confidence                             9999999999999999999999999999999999999999999999999998777655555 5


Q ss_pred             EEEEcCCcCCCHHHHHHhhcccchhhH
Q psy5016         170 SIKLKENAKLNAYEDKSISSDYHEFET  196 (485)
Q Consensus       170 ~~~~~~~~~~~~~~l~~~l~~~~~~~~  196 (485)
                      .|++++....+.+.+-..+++...+++
T Consensus       557 aI~~~p~~~~d~~~l~~~l~~~LP~YA  583 (649)
T KOG1179|consen  557 AIVLDPTTEKDLEKLYQHLRENLPSYA  583 (649)
T ss_pred             EEEecCcccchHHHHHHHHHhhCcccc
Confidence            566689888999888888877666553

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.50  E-value=2.6e-14  Score=148.71  Aligned_cols=85  Identities=39%  Similarity=0.620  Sum_probs=78.8

Q ss_pred             CcCcc--ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhh
Q psy5016          10 QFSTL--SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRR   86 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~   86 (485)
                      ..+++  |+|+++++|+|++ +++++.|++|||+|+|++++.||+++++.+++.|.+++||+||                
T Consensus       330 ~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG----------------  393 (417)
T PF00501_consen  330 KPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTG----------------  393 (417)
T ss_dssp             STTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEE----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecc----------------
Confidence            34445  9999999999998 9999999999999999999999999999999999866899999                


Q ss_pred             hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeC
Q psy5016          87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRG  131 (485)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~  131 (485)
                                           |+|++|+||+++++||.||+||++
T Consensus       394 ---------------------D~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  394 ---------------------DLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             ---------------------EEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ---------------------eEEEECCCCeEEEEEeeCCEEEeC
Confidence                                 999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.44  E-value=4.8e-13  Score=136.62  Aligned_cols=93  Identities=10%  Similarity=-0.003  Sum_probs=78.3

Q ss_pred             ceEEE-ecCccEEEeeccCceEEeCc---EEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcCCCHHH
Q psy5016         108 DQFVL-REDGYGQVVGRIKDMIIRGG---ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE  183 (485)
Q Consensus       108 D~~~~-~~~g~~~~~gR~~~~i~~~g---~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (485)
                      |+|++ |+||+++|+||.|     +|   +||+|. ||++|.+||+|.+|+|+|++++..|+.++++|++.+  ..+.++
T Consensus       215 Dlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~--~~~~~e  286 (365)
T PRK09188        215 KKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL--PADEKS  286 (365)
T ss_pred             CEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC--CCCHHH
Confidence            99998 6999999999998     88   899999 999999999999999999999999999999999874  467889


Q ss_pred             HHHhhcccchhhHh------hhhhhcCCCCCC
Q psy5016         184 DKSISSDYHEFETM------YDSIMAHPNRTT  209 (485)
Q Consensus       184 l~~~l~~~~~~~~~------~~~I~~~~n~~l  209 (485)
                      |+++|+++... ..      .++++.++++++
T Consensus       287 l~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi  317 (365)
T PRK09188        287 LRARLAGAKPP-KPPEHIQPVAALPRDADGTV  317 (365)
T ss_pred             HHHHHHhhchh-cCCcEEEEECCCCCCCCCCc
Confidence            99999877554 33      344445555544

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.42  E-value=1.1e-11  Score=127.23  Aligned_cols=154  Identities=16%  Similarity=0.178  Sum_probs=113.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCccCccccCccccc--CCcEEEE-cC--CCCCCCCCceEEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGL--YHFKKWM-NP--KFSTTTRKVALTWP  362 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~s~G~p~--pg~~v~I-d~--~~~~~~g~~Gel~v  362 (485)
                      +|+++++++..+.+.++|+.    .+++.||+||.......+..... |-.+  +.+-+.| ||  +..++.|+.|||++
T Consensus       217 ~gaE~~see~R~~ie~~~g~----~~~diYGltE~~g~g~~eC~~~~-glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~  291 (438)
T COG1541         217 FGAEPWSEEMRKVIENRFGC----KAFDIYGLTEGFGPGAGECTERN-GLHIWEDHFIFEIVDPETGEQLPDGERGELVI  291 (438)
T ss_pred             EecccCCHHHHHHHHHHhCC----ceeeccccccccCCccccccccc-CCCcchhhceeeeecCCcCccCCCCCeeEEEE
Confidence            88899999999999999983    34799999996332122222222 4444  5566777 76  55689999999999


Q ss_pred             ecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC----Ce-----EEEEecCCCeEEECcEeeChHHHHHH
Q psy5016         363 NSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED----GY-----GQVVGRIKDMIIRGGENIYPKEIEEF  433 (485)
Q Consensus       363 ~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~----G~-----l~i~GR~~d~I~~~G~~v~p~eIE~~  433 (485)
                      +.-   +           ....+..     .|+|||+.++.++    |+     ..|.||.||++++.|.+|+|..||++
T Consensus       292 T~L---~-----------~~~~PlI-----RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~  352 (438)
T COG1541         292 TTL---T-----------KEGMPLI-----RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERV  352 (438)
T ss_pred             Eec---c-----------ccCcceE-----EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHH
Confidence            987   2           1222111     7999999999773    22     47999999999999999999999999


Q ss_pred             HHcCCCcc-EEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         434 IQTHPNVL-EAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       434 l~~~~~V~-ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                      |.+++.+. +-.++... ....+.+.+-|++.+.
T Consensus       353 l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~  385 (438)
T COG1541         353 LLQIPEVTPHYQIILTR-NGGLDELTVRVELENE  385 (438)
T ss_pred             HhcccCCCceEEEEEec-CCCCceEEEEEEecCc
Confidence            99999999 44444433 4455677788887654

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.40  E-value=2.4e-12  Score=134.98  Aligned_cols=112  Identities=27%  Similarity=0.452  Sum_probs=91.1

Q ss_pred             ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      +.+.+.++|+|+ +|+++++|++|||++++.            +.+.+ +..||+||                       
T Consensus       251 ~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~~~-p~~ry~TG-----------------------  294 (422)
T TIGR02155       251 WEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------------TKEAL-PVIRYRTR-----------------------  294 (422)
T ss_pred             ecCeeEEEEECCCCCCCCCCCCeeEEEEecC------------Ccccc-ceeeEEcC-----------------------
Confidence            334678889995 699999999999999863            22233 47799999                       


Q ss_pred             hhhhhcccccccccceEEEecC-c-----cEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLRED-G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~-g-----~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                    |+++++++ |     ++++.||.||+|+++|.+|+|.+||.+|..||.|...+.+.+......+.+
T Consensus       295 --------------Dl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~  360 (422)
T TIGR02155       295 --------------DLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDEL  360 (422)
T ss_pred             --------------cEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEE
Confidence                          99999875 4     568999999999999999999999999999999987676666665555678


Q ss_pred             EEEEEEcCC
Q psy5016         168 GISIKLKEN  176 (485)
Q Consensus       168 ~~~~~~~~~  176 (485)
                      .+.|+..++
T Consensus       361 ~~~v~~~~~  369 (422)
T TIGR02155       361 TLKVELKPE  369 (422)
T ss_pred             EEEEEEecC
Confidence            787777654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.19  E-value=8.1e-11  Score=122.00  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=72.2

Q ss_pred             ccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcCCC--H
Q psy5016         104 SLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN--A  181 (485)
Q Consensus       104 ~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  181 (485)
                      +.|||+++++++|+++|+||.||+||++|++|+|.+||++|..||+|.+++|+.     .++++.++|+++++...+  .
T Consensus       277 ~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~~  351 (386)
T TIGR02372       277 LDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAELE  351 (386)
T ss_pred             eecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHHH
Confidence            467899999999999999999999999999999999999999999999998852     357899999988654333  3


Q ss_pred             HHHHHhhcccchhh
Q psy5016         182 YEDKSISSDYHEFE  195 (485)
Q Consensus       182 ~~l~~~l~~~~~~~  195 (485)
                      ++|+++++++...+
T Consensus       352 ~~l~~~~~~~L~~~  365 (386)
T TIGR02372       352 IELRATAARHLPAP  365 (386)
T ss_pred             HHHHHHHHHhCCCC
Confidence            56777776554433

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PTZ00297 pantothenate kinase; Provisional

Probab=99.10  E-value=2.4e-10  Score=133.95  Aligned_cols=179  Identities=13%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             CCCcCccccCCcEEEEEcC-C-CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016           8 DLQFSTLSSSSFQAKVVDH-N-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus         8 ~~~~~~~~~~~~~~~i~d~-~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      +...+..|+|+++++|.|. + +..   +..|||+++       |++||++|++.+  ++|+                  
T Consensus       798 ~~~~~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr-------~~kdpe~T~e~~--~gW~------------------  847 (1452)
T PTZ00297        798 VFCVDGTPAPSLQVDLEPFDEPSDG---AGIGQLVLA-------KKGEPRRTLPIA--AQWK------------------  847 (1452)
T ss_pred             CcccCCeecCceEEEEcccccccCC---CCCCeEEEE-------ECCChHHHHHhh--CcCc------------------
Confidence            3444466999999999864 2 221   235999995       568898888743  4553                  


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEE-eCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~-~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                                  +||+++|+||+||+|| .+|++|+|+.||+.+..+|.|.+++|+|....   
T Consensus       848 ----------------------------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k---  896 (1452)
T PTZ00297        848 ----------------------------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR---  896 (1452)
T ss_pred             ----------------------------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC---
Confidence                                        4789999999999999 89999999999999999999999999996433   


Q ss_pred             ceEEEEEEEcCCcCCCHHHHH-Hhhcccchhh-------------------Hhhhhh--hcCCCCCCCccccc-ccCCCC
Q psy5016         165 EEVGISIKLKENAKLNAYEDK-SISSDYHEFE-------------------TMYDSI--MAHPNRTTPYYQWW-SYDPNQ  221 (485)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~-------------------~~~~~I--~~~~n~~l~~~~~i-~~~~~~  221 (485)
                       .++|+|+++      .+.+. +|+.+++...                   .+...+  +...|. +..++.+ .+.+..
T Consensus       897 -~lvALVvpd------~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~-l~~~ei~k~~~Ll~  968 (1452)
T PTZ00297        897 -PIIAIVSPN------RDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENG-LHPSNVPEYVHLHP  968 (1452)
T ss_pred             -ceEEEEEeC------HHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhC-cCccceeeEEEEeC
Confidence             277888765      34455 5555443210                   011111  122222 2223333 367778


Q ss_pred             ccccccCCcceeeccccccCC-cEEEecccchhhHHHhhhc
Q psy5016         222 SYVTHDNGFPVDYNRALYSLK-MSSLLPHNFSAEVEAHYNQ  261 (485)
Q Consensus       222 ~~l~~~~gl~v~~tsgTtg~p-K~vvls~~~~~~~~~~~~~  261 (485)
                      +.++.++|++      |...+ |+..+..+|.......|.+
T Consensus       969 ~~Ft~enGlL------TPTlKlKR~~I~~kY~~~Ie~LY~~ 1003 (1452)
T PTZ00297        969 HAFKDHSTFL------TPYGKIRRDAVHSYFSSVIERFYSD 1003 (1452)
T ss_pred             CCCCCCCCcC------ChhhhhhHHHHHHHHHHHHHHHhcc
Confidence            8999999988      55555 7777788888777777764

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.06  E-value=2.7e-10  Score=125.69  Aligned_cols=97  Identities=32%  Similarity=0.390  Sum_probs=92.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |++++++.|.|+.++++|.|.+|||+|.|.++.+|||++++.|.+.|..+++|+||                        
T Consensus       546 p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tg------------------------  601 (642)
T COG1020         546 PVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTG------------------------  601 (642)
T ss_pred             eeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCC------------------------
Confidence            99999999999889999999999999999999999999999999999765678888                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCC
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  148 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~  148 (485)
                                   |++++..||.+.++||.|+.+|+.|.+|.+.|||..+..+|
T Consensus       602 -------------D~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         602 -------------DLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             -------------CeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence                         99999999999999999999999999999999999998875

>KOG1178|consensus

Probab=99.04  E-value=1.4e-09  Score=122.03  Aligned_cols=94  Identities=21%  Similarity=0.275  Sum_probs=86.1

Q ss_pred             CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC-C
Q psy5016         392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL-N  470 (485)
Q Consensus       392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~-~  470 (485)
                      |.|+|||.|+...+|.+.+.||.|++||.+|.++.+.||+.++..||.|.++.+....+..-++.+++|++...+... .
T Consensus       454 r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~  533 (1032)
T KOG1178|consen  454 RIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVL  533 (1032)
T ss_pred             hcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchh
Confidence            489999999999999999999999999999999999999999999999999999999998889999999998876533 3


Q ss_pred             HHHHHHHHHhhCCCC
Q psy5016         471 ADDIRTFCKGKVSKF  485 (485)
Q Consensus       471 ~~~l~~~l~~~l~~y  485 (485)
                      ..+|+.++..+|++|
T Consensus       534 ~~~i~~~l~~~La~y  548 (1032)
T KOG1178|consen  534 IRDIRNYLKKELASY  548 (1032)
T ss_pred             HHHHHHhhcccccce
Confidence            468999999999887

>KOG3628|consensus

Probab=98.95  E-value=3.3e-07  Score=101.15  Aligned_cols=122  Identities=17%  Similarity=0.126  Sum_probs=91.6

Q ss_pred             cccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-C-cccccccccc------cCCCCCeEecCceEEEe
Q psy5016         335 ALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-K-YLREEENITV------PDSAGRSIFEKDQFVLR  403 (485)
Q Consensus       335 ~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~-~~~~~~~~~~------~~~~g~~~~TGD~~~~d  403 (485)
                      -|+..+++++.| ++  ..+|..|+.||||+++.   +.+.+|+ . .+.....|..      .+... |-||||+|++.
T Consensus      1155 SG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~---hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~s-y~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1155 SGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSA---HNASCSFTIGDELRSNHFNARLSSGDLLGKS-YARTGDLGFLR 1230 (1363)
T ss_pred             CCcccccceeEEeCCccccccccCCcceEEeccc---cccccccccCchhhhhhhhhhcccccccccc-ceeeeeeeeee
Confidence            477779999999 55  45688999999999999   8888888 2 1111112210      01223 99999999984


Q ss_pred             c------C----CeEEEEecCCCeEEECcEeeChHHHHHHHHc-CCCccEEEEEEEeCCCCCcEEEEEEEEcC
Q psy5016         404 E------D----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMGEEVGISIKLKE  465 (485)
Q Consensus       404 ~------~----G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~-~~~V~ea~vv~~~~~~~g~~~~a~vv~~~  465 (485)
                      .      +    .-||++|-.++.+.++|.+-+|.+||+.+.. ||.|.+|+|+-.     +..++.++.+..
T Consensus      1231 ~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~-----~glvVvviE~~g 1298 (1363)
T KOG3628|consen 1231 RTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA-----TGLVVVVIECHG 1298 (1363)
T ss_pred             eeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee-----CCeEEEEEEecC
Confidence            2      2    3589999999999999999999999998875 999999998865     335666666543

>KOG1178|consensus

Probab=98.60  E-value=1.8e-07  Score=105.32  Aligned_cols=114  Identities=15%  Similarity=0.116  Sum_probs=97.8

Q ss_pred             ccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcCCC-
Q psy5016         102 FYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-  180 (485)
Q Consensus       102 ~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  180 (485)
                      -+|+|||.++.-.+|.+.+.||.|+.||++|.++...||+.++..||.|.+++.....+..-++.+.+|++.+.+...+ 
T Consensus       454 r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~  533 (1032)
T KOG1178|consen  454 RIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVL  533 (1032)
T ss_pred             hcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchh
Confidence            3556669999988999999999999999999999999999999999999999999999888899999999988765433 


Q ss_pred             HHHHHHhhcccchhhHh------hhhhhcCCCCCCCccccc
Q psy5016         181 AYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQWW  215 (485)
Q Consensus       181 ~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~~i  215 (485)
                      ...|+.++.+....+.+      +..++.+++++++.++..
T Consensus       534 ~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~  574 (1032)
T KOG1178|consen  534 IRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALL  574 (1032)
T ss_pred             HHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhh
Confidence            47899999988877655      467788888888766655

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.58  E-value=8.1e-07  Score=94.04  Aligned_cols=127  Identities=15%  Similarity=0.100  Sum_probs=78.0

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      +-+.+.++|+|++ +.++|+|+.|||++++-......    . ....+    -|+||                       
T Consensus       256 ~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r----~-~~Pli----RYrtg-----------------------  303 (445)
T TIGR03335       256 PEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGER----C-GSLLI----NYDTE-----------------------  303 (445)
T ss_pred             cCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCcc----C-CceEE----EeecC-----------------------
Confidence            4456889999988 56799999999999753211000    0 00011    14555                       


Q ss_pred             hhhhhcccccccccceEEEec-C----c----cEEEeeccCceEEeCcEEeChHHHHHHHHcC---CCcceEEEEEeeCC
Q psy5016          94 QQQQQIGFFYSLVSDQFVLRE-D----G----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTH---PNVLEAYAYGVPDE  161 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~-~----g----~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~---~~v~~~~~~~~~~~  161 (485)
                                    |++++.. +    |    .+...||.|||++++|.||+|.+||++|..+   +.+...+-+-+...
T Consensus       304 --------------D~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~  369 (445)
T TIGR03335       304 --------------DTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGE  369 (445)
T ss_pred             --------------ceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecC
Confidence                          9988632 2    2    1345799999999999999999999999995   55543343333222


Q ss_pred             -CCCceEEEEEEEcCCcCCCHHHHHHh
Q psy5016         162 -RMGEEVGISIKLKENAKLNAYEDKSI  187 (485)
Q Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~l~~~  187 (485)
                       .....+.+.|...+....+.+++.+.
T Consensus       370 ~~~~~~~~v~~e~~~~~~~~~~~~~~~  396 (445)
T TIGR03335       370 EEGEITLRVSLECEDKDNCSIHDIQEN  396 (445)
T ss_pred             CCCCceEEEEEEecCcccchHHHHHHH
Confidence             22235666666655433333444433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.49  E-value=2.6e-07  Score=72.27  Aligned_cols=51  Identities=37%  Similarity=0.639  Sum_probs=46.9

Q ss_pred             HHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         429 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       429 eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      |||++|.+||+|.+|+|++.+++..|+.++|||++      +.++|+++|+++|++|
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~   51 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPY   51 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GG
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCc
Confidence            79999999999999999999999999999999998      4489999999999876

...

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=98.27  E-value=8.7e-06  Score=84.16  Aligned_cols=112  Identities=30%  Similarity=0.475  Sum_probs=83.3

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      ....+-++|+|++ |..+++|+.|||+++.-.            ++.+ |-=-|+||                       
T Consensus       264 ~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~------------~~~~-PlIRYrtg-----------------------  307 (438)
T COG1541         264 WEDHFIFEIVDPETGEQLPDGERGELVITTLT------------KEGM-PLIRYRTG-----------------------  307 (438)
T ss_pred             chhhceeeeecCCcCccCCCCCeeEEEEEecc------------ccCc-ceEEEEcC-----------------------
Confidence            5667889999966 999999999999997421            1111 11125666                       


Q ss_pred             hhhhhcccccccccceEEEecC----c-----cEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          94 QQQQQIGFFYSLVSDQFVLRED----G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~----g-----~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                    |+..+.++    |     ...|.||.|||+++.|.+|+|..||.+|.+.+++...+-+-+.....-
T Consensus       308 --------------Dit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~  373 (438)
T COG1541         308 --------------DITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGL  373 (438)
T ss_pred             --------------CeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCC
Confidence                          99998752    2     235899999999999999999999999999999994444433334444


Q ss_pred             ceEEEEEEEcCC
Q psy5016         165 EEVGISIKLKEN  176 (485)
Q Consensus       165 ~~~~~~~~~~~~  176 (485)
                      +.+.+.|.+.++
T Consensus       374 d~L~V~vE~~~~  385 (438)
T COG1541         374 DELTVRVELENE  385 (438)
T ss_pred             ceEEEEEEecCc
Confidence            678888888765

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.11  E-value=4.6e-06  Score=65.16  Aligned_cols=54  Identities=33%  Similarity=0.371  Sum_probs=46.2

Q ss_pred             HHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcCCCHHHHHHhhcccchhhHhh
Q psy5016         139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMY  198 (485)
Q Consensus       139 ~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  198 (485)
                      |||++|.+||+|.+|+|++++++..|+.++++|++      +.++|+++|+++...+..+
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P   54 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVP   54 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCccee
Confidence            79999999999999999999999999999999998      4488999998776655444

...

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.05  E-value=6.4e-05  Score=78.90  Aligned_cols=132  Identities=13%  Similarity=0.070  Sum_probs=83.6

Q ss_pred             hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCCccCccccCcccccCCcEEE--E-cCCCCCCCCCceEEEE
Q psy5016         286 SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKW--M-NPKFSTTTRKVALTWP  362 (485)
Q Consensus       286 ~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~s~G~p~pg~~v~--I-d~~~~~~~g~~Gel~v  362 (485)
                      .+++|+++++...+.+.+.|+    ..+++.||+||+.+ . .....+...---..+-++  + |++.      .+..+|
T Consensus       217 ii~~~E~l~~~~r~~Ie~~fg----~~V~~~YG~tEg~l-a-~eC~~g~lHl~ed~~~vE~~ivD~~~------~~~~Vi  284 (430)
T TIGR02304       217 VISVAEVLEPQDRELIRNVFK----NTVHQIYQATEGFL-A-STCRCGTLHLNEDLVHIEKQYLDEHK------RFVPII  284 (430)
T ss_pred             EEEccCCCCHHHHHHHHHHhC----CCeeEccCCchhhe-E-EecCCCCEEEccccEEEEeeEECCCC------ceEEEE
Confidence            458899999999888999998    45689999999422 1 111122221111223333  4 5432      134466


Q ss_pred             ecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC----Ce----E-EEEecCCCeEEE---Cc--EeeChH
Q psy5016         363 NSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED----GY----G-QVVGRIKDMIIR---GG--ENIYPK  428 (485)
Q Consensus       363 ~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~----G~----l-~i~GR~~d~I~~---~G--~~v~p~  428 (485)
                      ++-         .+  .+...+        .|+|||++...++    |.    + .|.||.+|+++.   +|  .+|+|.
T Consensus       285 T~L---------~n--~~~PlI--------RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~  345 (430)
T TIGR02304       285 TDF---------TR--TTQPIV--------RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPD  345 (430)
T ss_pred             ecC---------CC--ccceEE--------eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHH
Confidence            654         11  011122        7999999888543    32    3 488999999985   34  556999


Q ss_pred             HHHHHHH-cCCCccEEEEEEE
Q psy5016         429 EIEEFIQ-THPNVLEAYAYGV  448 (485)
Q Consensus       429 eIE~~l~-~~~~V~ea~vv~~  448 (485)
                      .+++++. ..++|.+..++..
T Consensus       346 ~~~~~i~~~~~~i~~yQi~Q~  366 (430)
T TIGR02304       346 FIRRVILFTLPLIVEYRVLQT  366 (430)
T ss_pred             HHHHHHHhcCCCCceEEEEEc
Confidence            9998855 5789998877753

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628|consensus

Probab=97.88  E-value=9.8e-05  Score=82.22  Aligned_cols=129  Identities=18%  Similarity=0.211  Sum_probs=91.8

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      ..+++++.|++++ -.+|.+|+.||||+.+.....+|++-.+. -..-+.+.-+.+|-.-                    
T Consensus      1158 ~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~-~~~~~fn~rl~~g~~~-------------------- 1216 (1363)
T KOG3628|consen 1158 LPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDE-LRSNHFNARLSSGDLL-------------------- 1216 (1363)
T ss_pred             ccccceeEEeCCccccccccCCcceEEeccccccccccccCch-hhhhhhhhhccccccc--------------------
Confidence            5588999999988 46999999999999998888777764111 1111112223333111                    


Q ss_pred             hhhhhcccccccccceEEEec------C----ccEEEeeccCceEEeCcEEeChHHHHHHHHc-CCCcceEEEEEeeCCC
Q psy5016          94 QQQQQIGFFYSLVSDQFVLRE------D----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDER  162 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~------~----g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~-~~~v~~~~~~~~~~~~  162 (485)
                            +.-|.+|||+|.++.      .    .-+|++|-+++.+-++|-+-+|.+||+.+.. ||+|.+|+|+-.    
T Consensus      1217 ------~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~---- 1286 (1363)
T KOG3628|consen 1217 ------GKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA---- 1286 (1363)
T ss_pred             ------cccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee----
Confidence                  222445559998743      2    2579999999999999999999999998885 899999888754    


Q ss_pred             CCceEEEEEEEcC
Q psy5016         163 MGEEVGISIKLKE  175 (485)
Q Consensus       163 ~~~~~~~~~~~~~  175 (485)
                       +..+++.|.+..
T Consensus      1287 -~glvVvviE~~g 1298 (1363)
T KOG3628|consen 1287 -TGLVVVVIECHG 1298 (1363)
T ss_pred             -CCeEEEEEEecC
Confidence             335667676654

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=96.39  E-value=0.021  Score=61.91  Aligned_cols=158  Identities=9%  Similarity=-0.034  Sum_probs=86.2

Q ss_pred             HHHHHhhhhhcccCccccccccCCCCCCCccCccccCcccccCCcE-EE-E--cCCC-------------CCCCCCceEE
Q psy5016         298 RRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFK-KW-M--NPKF-------------STTTRKVALT  360 (485)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~s~G~p~pg~~-v~-I--d~~~-------------~~~~g~~Gel  360 (485)
                      .+.+.+.++.  ...+..+|++||+....... .....+.+++... .+ |  ++..             ++..|+.=||
T Consensus       284 ~~~l~~~~g~--~~~~~~~y~ASEg~i~i~~~-~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~l~~~ele~G~~Yel  360 (528)
T PF03321_consen  284 APKLREYFGG--VPIQSKGYGASEGFIGIPLD-PEDPGYVLAPDSGFFEFIPVDEDEQNPSEQPKTLLLHELEVGEEYEL  360 (528)
T ss_dssp             HHHHHHHHTT--S-EEE-EEEETTEEEEEES--CCC--EEE-TTSSEEEEEE-STT-------SSSEEGGG--TT-EEEE
T ss_pred             HHHHHHHcCC--CceeeccccccceEEEEecC-CCCCceEeecCCeEEEEEeccCCcccccCCCceecHHHhcCCCeEEE
Confidence            3555566663  24456899999974322221 1112223333332 11 1  3211             1456777888


Q ss_pred             EEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec--CC--eEEEEecCCCeEEECcEeeChHHHHHHHHc
Q psy5016         361 WPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE--DG--YGQVVGRIKDMIIRGGENIYPKEIEEFIQT  436 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~--~G--~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~  436 (485)
                      +++..   +.   .|                 .|+.||+++...  ++  .+.|+||.+.++++.|++++..+|+++|.+
T Consensus       361 viTt~---~G---Ly-----------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~  417 (528)
T PF03321_consen  361 VITTN---SG---LY-----------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVAR  417 (528)
T ss_dssp             EEEST---TS----S-----------------SEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHH
T ss_pred             EEecc---cc---ee-----------------eeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHH
Confidence            88877   22   11                 689999999853  34  689999999999999999999999999986


Q ss_pred             C-----CCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHhhC
Q psy5016         437 H-----PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV  482 (485)
Q Consensus       437 ~-----~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l  482 (485)
                      .     -.+.+-.+.+.+.......-+.|+.+... ..+.+++.+.+-+.|
T Consensus       418 ~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  418 ALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL  467 (528)
T ss_dssp             HHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred             HHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence            4     33446666655322233456677776543 222344555554444

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.31  E-value=0.013  Score=48.35  Aligned_cols=46  Identities=28%  Similarity=0.514  Sum_probs=36.1

Q ss_pred             cEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC
Q psy5016         422 GENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA  467 (485)
Q Consensus       422 G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~  467 (485)
                      |.||+|.+||++|.++|++.....+.+......+.+.+.|.+.++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~   46 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF   46 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc
Confidence            8899999999999999999955555555545677888888888754

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=95.96  E-value=0.032  Score=57.42  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=69.4

Q ss_pred             CCC-CHHHHHHHHhhhhhcccCccccccccCCCCCCCccCccccCcccccCCcEEEE-cCC--CCCCCCCceEEEEecCC
Q psy5016         291 YAG-PVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLYHFKKWM-NPK--FSTTTRKVALTWPNSMD  366 (485)
Q Consensus       291 ~~~-~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~s~G~p~pg~~v~I-d~~--~~~~~g~~Gel~v~g~~  366 (485)
                      +.+ ..++.+.+.+.|+......+++.|||||......... .+.  .+.|-- +.| |+.  .+++.|+.|-|.+=.+.
T Consensus       237 e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~-~~~--~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~  312 (365)
T PF04443_consen  237 EAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECG-HGH--FHVPPW-VIIRDPETLEPLPPGETGLIQVIDLA  312 (365)
T ss_pred             CccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCC-CCc--ccCCCe-EEEECCCCCcCCCCCCeeEEEEEccc
Confidence            345 4567777778888644456789999999543222211 111  122222 666 764  56899999999998873


Q ss_pred             CCcccccccCcccccccccccCCCCCeEecCceEEEecC--------CeEEEEecCCCeEEECcEee
Q psy5016         367 SEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED--------GYGQVVGRIKDMIIRGGENI  425 (485)
Q Consensus       367 ~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~--------G~l~i~GR~~d~I~~~G~~v  425 (485)
                      +              .     ..-+ ..-|.|+|.+..+        .++.++||.+. -.++|...
T Consensus       313 ~--------------~-----s~p~-~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~-ae~RGCs~  358 (365)
T PF04443_consen  313 N--------------T-----SYPG-FILTEDLGVLHGDDDCGCRKGKYFEVLGRADG-AEIRGCSL  358 (365)
T ss_pred             c--------------c-----CCCc-EEEEcceeeecCCCCCCCccCCEEEEEeCCCC-CccCCcHH
Confidence            2              0     1234 5779999988654        27999999873 33455544

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=94.71  E-value=0.11  Score=42.71  Aligned_cols=47  Identities=28%  Similarity=0.504  Sum_probs=37.7

Q ss_pred             cEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcC
Q psy5016         132 GENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK  178 (485)
Q Consensus       132 g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (485)
                      |.||+|.+||++|.++|++...+-+-+......+.+.+.|.+.++..
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~   47 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS   47 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC
Confidence            78999999999999999999667666655555688888888888654

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=93.85  E-value=0.14  Score=55.42  Aligned_cols=81  Identities=12%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             hhhcccccccccceEEEec--Cc--cEEEeeccCceEEeCcEEeChHHHHHHHHcC---CC--cceEEEEEeeCCCCCce
Q psy5016          96 QQQIGFFYSLVSDQFVLRE--DG--YGQVVGRIKDMIIRGGENIYPKEIEEFIQTH---PN--VLEAYAYGVPDERMGEE  166 (485)
Q Consensus        96 ~~~~~~~~~~~~D~~~~~~--~g--~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~---~~--v~~~~~~~~~~~~~~~~  166 (485)
                      .+..|+|.|+.||+.+...  ++  .+.|+||.+.++++.|++++..+|++++.+.   .+  +.+-.+...........
T Consensus       363 Tt~~GLyRY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~  442 (528)
T PF03321_consen  363 TTNSGLYRYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPH  442 (528)
T ss_dssp             ESTTS-SSEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBE
T ss_pred             ecccceeeeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCc
Confidence            3567999999999988753  44  6899999999999999999999999999875   23  34555554422233345


Q ss_pred             EEEEEEEcCC
Q psy5016         167 VGISIKLKEN  176 (485)
Q Consensus       167 ~~~~~~~~~~  176 (485)
                      -..++.+...
T Consensus       443 Y~~~~e~~~~  452 (528)
T PF03321_consen  443 YVLFWELEGE  452 (528)
T ss_dssp             EEEEEEECS-
T ss_pred             eEEEEEeCCC
Confidence            6677776544

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=92.08  E-value=4.7  Score=44.34  Aligned_cols=44  Identities=5%  Similarity=-0.003  Sum_probs=38.6

Q ss_pred             eEecCceEEEecC----CeEEEEecCCCeEEECcEeeChHHHHHHHHc
Q psy5016         393 SIFEKDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  436 (485)
Q Consensus       393 ~~~TGD~~~~d~~----G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~  436 (485)
                      .|+.||+.+...-    =.|.|+||.+.++++.|++++-.+++++|.+
T Consensus       409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             EeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            5889999998532    2589999999999999999999999998876

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=90.90  E-value=1  Score=49.48  Aligned_cols=51  Identities=8%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             hhhcccccccccceEEEec----CccEEEeeccCceEEeCcEEeChHHHHHHHHc
Q psy5016          96 QQQIGFFYSLVSDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  146 (485)
Q Consensus        96 ~~~~~~~~~~~~D~~~~~~----~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~  146 (485)
                      .++.|+|.|+.||+.+...    -=.+.|+||.+.++++.|+++...+++.++.+
T Consensus       402 TT~~GLyRY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        402 TTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             EcccceeEeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            4568999999999998863    23588999999999999999999999999887

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=87.61  E-value=1.6  Score=46.15  Aligned_cols=69  Identities=20%  Similarity=0.314  Sum_probs=46.0

Q ss_pred             cccccccceEEEecC----cc----E-EEeeccCceEEe---Cc--EEeChHHHHHHHH-cCCCcceEEEEEeeCCCCCc
Q psy5016         101 FFYSLVSDQFVLRED----GY----G-QVVGRIKDMIIR---GG--ENIYPKEIEEFIQ-THPNVLEAYAYGVPDERMGE  165 (485)
Q Consensus       101 ~~~~~~~D~~~~~~~----g~----~-~~~gR~~~~i~~---~g--~~~~~~~ie~~~~-~~~~v~~~~~~~~~~~~~~~  165 (485)
                      +..|.|||++...++    |.    + .|.||.+|++++   +|  .+|+|..++.+|. ..++|.+.-++-. .   .+
T Consensus       294 lIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~-~---~~  369 (430)
T TIGR02304       294 IVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT-G---SA  369 (430)
T ss_pred             EEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc-c---CC
Confidence            367888899887543    32    2 378999999985   34  4569999998855 5678877555422 1   23


Q ss_pred             eEEEEEEE
Q psy5016         166 EVGISIKL  173 (485)
Q Consensus       166 ~~~~~~~~  173 (485)
                      .+.+.++.
T Consensus       370 ~l~v~~~~  377 (430)
T TIGR02304       370 QLELIADC  377 (430)
T ss_pred             eEEEEEEe
Confidence            45566655

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=86.46  E-value=12  Score=41.17  Aligned_cols=44  Identities=7%  Similarity=0.003  Sum_probs=37.5

Q ss_pred             eEecCceEEEec----CCeEEEEecCCCeEEECcEeeChHHHHHHHHc
Q psy5016         393 SIFEKDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  436 (485)
Q Consensus       393 ~~~TGD~~~~d~----~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~  436 (485)
                      .|+.||+.+...    .-.+.|++|.+-+..+.|++++-.++-+++..
T Consensus       422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN  469 (612)
T ss_pred             EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence            688999988842    34699999999999999999999999887765

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=83.98  E-value=2.8  Score=43.27  Aligned_cols=30  Identities=13%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccc
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHC   45 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~   45 (485)
                      ++|.. +.|+|++ ..+++.|++|-|.+=.+.
T Consensus       282 ~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~  312 (365)
T PF04443_consen  282 HVPPW-VIIRDPETLEPLPPGETGLIQVIDLA  312 (365)
T ss_pred             cCCCe-EEEECCCCCcCCCCCCeeEEEEEccc
Confidence            44444 8888977 689999999999986543

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=83.19  E-value=5.5  Score=43.73  Aligned_cols=44  Identities=7%  Similarity=0.027  Sum_probs=37.8

Q ss_pred             eEecCceEEEe----cCCeEEEEecCCCeEEECcEeeChHHHHHHHHc
Q psy5016         393 SIFEKDQFVLR----EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  436 (485)
Q Consensus       393 ~~~TGD~~~~d----~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~  436 (485)
                      .|+.||+.+..    ..-.|.|++|.+.+..+.|++++-.++-+++.+
T Consensus       416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             EEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence            68899998874    234689999999999999999999999888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	485
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-12
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-12
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		1e-11
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		3e-10
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		4e-10
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-09
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		4e-08
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		5e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		7e-07
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		8e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		1e-06
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-07
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-08
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		4e-08
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		5e-08
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		9e-07
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-06
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-04
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-06
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-04
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-06
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-04
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		5e-06
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		1e-05
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		5e-06
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-04
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		8e-06
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		8e-06
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		9e-06
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		1e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		5e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		1e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		5e-05
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-05
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-04
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-05
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-04
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-05
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-04
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-05
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-04
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-05
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		4e-05
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-04
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		5e-04
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		7e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		7e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		7e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		7e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		7e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		7e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		7e-04

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
            D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ 
Sbjct: 384 SDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
           V   +  +    L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
            D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ 
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
           V   +  +    L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
            D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ 
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
           V   +  +    L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
            D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ 
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
           V   +  +    L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
            D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ 
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
           V   +  +    L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
            D  V   +G  +++GR+ D II GGENI+P EIE  + T P V E    G+ D+R G+ 
Sbjct: 384 SDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQS 443
Query: 457 VGISIKLKENAKLNADDIRTFCK 479
           V   +  +    L+AD + TFC+
Sbjct: 444 VTACVVPRLGETLSADALDTFCR 466

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 392 RSIFEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
           +S F  D F +  D       GY  ++GR KD++I GG N+YPKEIE  I   P V+E+ 
Sbjct: 369 KSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESA 428
Query: 445 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
             GVP    GE V   +   + A ++   +     G+++KF
Sbjct: 429 VIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKF 469

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           ++GY  +  R+KDMII GGEN+YP EIE  I   P V E    G+PDE+ G E+  +I +
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG-EIAAAIVV 460
Query: 464 KENAKLNADDIRTFCKGKVSKF 485
            +  +++   I  +C  +++++
Sbjct: 461 ADQNEVSEQQIVEYCGTRLARY 482

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 38/160 (23%)
Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
           K+VD   R VP G  G L  RG     GY++  +   +    D           ++ YS 
Sbjct: 373 KIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDED-----------NYYYSG 421
Query: 82  MAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE 141
             ++R                            DG  +VVGRIKD I RGGE I  +EIE
Sbjct: 422 DLVQRT--------------------------PDGNLRVVGRIKDQINRGGEKIASEEIE 455
Query: 142 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           + I  HP V+ A    + DE+ GE+   +  +  N +L A
Sbjct: 456 KLILLHPEVMHAALVAIVDEQFGEK-SCAFIVSRNPELKA 494

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 464
           DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+   +  + 
Sbjct: 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK-SCAFIVS 487
Query: 465 ENAKLNADDIR 475
            N +L A  +R
Sbjct: 488 RNPELKAVVLR 498

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 37/157 (23%)
Query: 21  AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
           ++V D ++R V  G  G LL RG   + GY++ E+    +   D + RTG          
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG---------- 412
Query: 81  AMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
                                      D   L  DGY  V GR KD I RGGE +  +E+
Sbjct: 413 ---------------------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
           E  +  HP V +A    +PD+ +GE   + I  ++ A
Sbjct: 446 ENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476
Query: 462 KLKENAKLNADDIRTFCK 479
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 37/157 (23%)
Query: 21  AKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
           ++V D ++R V  G  G LL RG   + GY++ E+    +   D + RTG          
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG---------- 412
Query: 81  AMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
                                      D   L  DGY  V GR KD I RGGE +  +E+
Sbjct: 413 ---------------------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
           E  +  HP V +A     PD+ +GE   + I  ++ A
Sbjct: 446 ENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEA 482

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A     PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI 476
Query: 462 KLKENAKLNADDIRTFCK 479
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 40/148 (27%)
Query: 22  KVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA 81
            VVD  +R +P G  GE+++RG     GYW +   T+     + W  TG           
Sbjct: 333 AVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTG----------- 380
Query: 82  MAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKE 139
                                     D      DGY    GR   K++I  GGEN+YP E
Sbjct: 381 --------------------------DMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE 414
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           +E  ++ HP + +A   GVPD +  E +
Sbjct: 415 VEGALKQHPAIADAVVIGVPDPQWSEAI 442

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 405 DGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 462
           DGY    GR   K++I  GGEN+YP E+E  ++ HP + +A   GVPD +  E +     
Sbjct: 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCV 447
Query: 463 LKENAKLNADDIRTFCKGKVSKF 485
            K    + AD +  F    ++++
Sbjct: 448 CKPGESIAADALAEFVASLIARY 470

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 395 FEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 447
           F  D F +  D       GY  ++GR  D++I GG N+YP EIE  I   P V+E+   G
Sbjct: 372 FRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIG 431
Query: 448 VPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
           VP    GE V   +     A ++   +     G+++ F
Sbjct: 432 VPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXF 469

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 395 FEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 447
           F  D F +  D       GY  ++GR  D++I GG N+YP EIE  I   P V+E+   G
Sbjct: 372 FRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIG 431
Query: 448 VPDERMGEEVGISIKLKEN---AKLNADDIRTFCKGKVSKF 485
           VP    GE V   + L      +++ A+++  F   +++ F
Sbjct: 432 VPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXF 472

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP 159
           GFF  +  D   + E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP
Sbjct: 376 GFF--ITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 160 DERMGEEVGISIKL 173
               GE V   + L
Sbjct: 434 HADFGEGVTAFVVL 447

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 395 FEKDQFVLRED-------GYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 447
           F  D F +  D       GY  ++GR  D++I GG N+YP EIE  I   P V+E+   G
Sbjct: 372 FRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIG 431
Query: 448 VPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
           VP    GE V   + L      +   +     G+++ F
Sbjct: 432 VPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXF 469

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   +  +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE+ 
Sbjct: 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKS 476
Query: 458 GISIKLKENAKLNADDIRTFCK 479
              + +KE   L A  +R F +
Sbjct: 477 CAYLVVKE--PLRAVQVRRFLR 496

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21  AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           AKVVD +  + +     GEL +RG   M GY  + + T   I  D WL +G         
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 421
Query: 80  SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D     ED +  +V R+K +I   G  + P E
Sbjct: 422 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
           +E  +  HPN+ +A   G+PD+  GE
Sbjct: 454 LESILLQHPNIFDAGVAGLPDDDAGE 479

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 464 KENAKLNADDIRTFCKGKVS 483
           +    +   +I  +   +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVT 507

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21  AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           AKVVD +  + +     GEL +RG   M GY  + + T   I  D WL +G         
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 421
Query: 80  SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D     ED +  +V R+K +I   G  + P E
Sbjct: 422 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
           +E  +  HPN+ +A   G+PD+  GE
Sbjct: 454 LESILLQHPNIFDAGVAGLPDDDAGE 479

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 464 KENAKLNADDIRTFCKGKVS 483
           +    +   +I  +   +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVT 507

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21  AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           AKVVD +  + +     GEL +RG   M GY  + + T   I  D WL +G         
Sbjct: 376 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 426
Query: 80  SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D     ED +  +V R+K +I   G  + P E
Sbjct: 427 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 458
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
           +E  +  HPN+ +A   G+PD+  GE
Sbjct: 459 LESILLQHPNIFDAGVAGLPDDDAGE 484

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 464 KENAKLNADDIRTFCKGKVS 483
           +    +   +I  +   +V+
Sbjct: 493 EHGKTMTEKEIVDYVASQVT 512

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 38/164 (23%)
Query: 21  AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           AK+VD +  + +     GEL ++G   M GY  + + T   I  D WL +G         
Sbjct: 406 AKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSG--------- 456
Query: 80  SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D     +DGY  +V R+K +I   G  + P E
Sbjct: 457 ----------------------------DIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAE 488
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           +E  +  HP + +A   G+PD   GE     + L+E   +   E
Sbjct: 489 LESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQE 532

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           +DGY  +V R+K +I   G  + P E+E  +  HP + +A   G+PD   GE     + L
Sbjct: 463 KDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVL 522
Query: 464 KENAKLNADDIRTFCKGKVS 483
           +E   +   ++  +  G+V+
Sbjct: 523 EEGKTMTEQEVMDYVAGQVT 542

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 38/146 (26%)
Query: 21  AKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           AKVVD +  + +     GEL +RG   M GY  + + T   I  D WL +G         
Sbjct: 376 AKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSG--------- 426
Query: 80  SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D     ED +  +V R+K +I   G  + P E
Sbjct: 427 ----------------------------DIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAE 458
Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGE 165
           +E  +  HPN+ +A   G+PD+  GE
Sbjct: 459 LESILLQHPNIFDAGVAGLPDDDAGE 484

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 464 KENAKLNADDIRTFCKGKVS 483
           +    +   +I  +   +V+
Sbjct: 493 EHGKTMTEKEIVDYVASQVT 512

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 165
           +  +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 402 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 455
           +  +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
           Y    D   + EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD  
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPV 512
Query: 163 MGEEVGISIKLKENAKLNAYEDKSISSDYHEFETMYDSIMAH-PNRTTPY 211
            G+ +  +I L              + DY   +++ + +  H  N T PY
Sbjct: 513 RGQVIKATIVL--------------TKDYTPSDSLKNELQDHVKNVTAPY 548

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D   + EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+ +
Sbjct: 458 DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517
Query: 458 GISIKLKEN 466
             +I L ++
Sbjct: 518 KATIVLTKD 526

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
           + L+ D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD  
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493
Query: 163 MGEEV 167
            GE V
Sbjct: 494 RGEVV 498

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 103 YSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 162
           + L+ D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD  
Sbjct: 434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493
Query: 163 MGEEV 167
            GE V
Sbjct: 494 RGEVV 498

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 37/147 (25%)
Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXXX 96
           GE+ ++G   M GY  + + TKE I  + WL TG                          
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG-------------------------- 423
Query: 97  XXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
             IG++           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   
Sbjct: 424 -DIGYY----------DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 157 GVPDERMGEEVGISIKLKENAKLNAYE 183
           GVPD   GE  G  + L+    +   E
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKE 499

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 469
           +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L+    +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 470 NADDIRTFCKGKVS 483
              ++  +   +VS
Sbjct: 496 TEKEVMDYVASQVS 509

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 37/147 (25%)
Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXXX 96
           GE+ ++G   M GY  + + TKE I  + WL TG                          
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG-------------------------- 423
Query: 97  XXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
             IG++           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   
Sbjct: 424 -DIGYY----------DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 157 GVPDERMGEEVGISIKLKENAKLNAYE 183
           GVPD   GE  G  + L+    +   E
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKE 499

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 469
           +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L+    +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 470 NADDIRTFCKGKVS 483
              ++  +   +VS
Sbjct: 496 TEKEVMDYVASQVS 509

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 37/147 (25%)
Query: 37  GELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXXX 96
           GE+ ++G   M GY  + + TKE I  + WL TG                          
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG-------------------------- 423
Query: 97  XXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 156
             IG++           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   
Sbjct: 424 -DIGYY----------DEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 157 GVPDERMGEEVGISIKLKENAKLNAYE 183
           GVPD   GE  G  + L+    +   E
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKE 499

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 469
           +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L+    +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 470 NADDIRTFCKGKVS 483
              ++  +   +VS
Sbjct: 496 TEKEVMDYVASQVS 509

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 100 GFFYSLVSDQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV 158
           GFF +   D  V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G 
Sbjct: 382 GFFRT--GDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439
Query: 159 PDERMGEEV 167
           PD  +GE +
Sbjct: 440 PDPDLGERI 448

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 398 DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
           D  V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE 
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447
Query: 457 V 457
           +
Sbjct: 448 I 448

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 40/165 (24%)
Query: 22  KVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYS 80
           K+VD      +P   PGE+ IRG   M GY  D + T  TI  + WL TG          
Sbjct: 367 KIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDE 426
Query: 81  AMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI 140
                                                  +V R+K++I   G  + P E+
Sbjct: 427 LF-------------------------------------IVDRLKELIKYKGFQVAPAEL 449
Query: 141 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDK 185
           E  +  HP + +A   G+ DE  G EV ++  +K   K  A ED+
Sbjct: 450 EALLIAHPEISDAAVVGLKDEDAG-EVPVAFVVKSE-KSQATEDE 492

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 39/140 (27%)
Query: 22  KVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           +V D   R VP      GE+ ++G     GY+ +E+ T+  + PD + RTG         
Sbjct: 367 RVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG--------- 417
Query: 80  SAMAIRRKLKPLXXXXXXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D  V  E+GY ++  R+KD+I  GGE I   +
Sbjct: 418 ----------------------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD 449
Query: 140 IEEFIQTHPNVLEAYAYGVP 159
           +E  +  HP V EA    +P
Sbjct: 450 LENALMGHPKVKEAAVVAIP 469

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 38/142 (26%)
Query: 36  PGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLXXXX 95
           PGE+ IRGH  M GY  +   T ETI  D WL TG                         
Sbjct: 429 PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELF------------- 475
Query: 96  XXXIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 155
                                   +V R+K++I   G  + P E+E  +  HP++ +   
Sbjct: 476 ------------------------IVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAV 511
Query: 156 YGVPDERMGE-EVGISIKLKEN 176
             + +E  GE  V   +K K++
Sbjct: 512 VAMKEEAAGEVPVAFVVKSKDS 533

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 388 DSAGRSIFEK-DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY 446
           D  GR  F   D   + E+G+     R+K++I   G  I P E+E  +  H  V +    
Sbjct: 411 DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVI 470
Query: 447 GVPDERMGE--EVGISIKLKENAKLNADDIRTFCKGKVSKF 485
           G PDE  GE  +  I +K +   K++ +DI  + + ++S +
Sbjct: 471 GKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGY 511

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
           F  D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
           + +
Sbjct: 557 QAI 559

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
           F  D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
           + +
Sbjct: 557 QAI 559

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
           F  D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
           + +
Sbjct: 557 QAI 559

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
           F  D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
           + +
Sbjct: 557 QAI 559

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
           F  D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
           + +
Sbjct: 557 QAI 559

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
           F  D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
           + +
Sbjct: 557 QAI 559

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 454
           F  D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 455 EEV 457
           + +
Sbjct: 557 QAI 559

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	485
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-50
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	4e-34
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-49
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-34
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	5e-48
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-32
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	6e-46
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-33
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-44
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-33
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-40
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-28
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-39
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	3e-28
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-39
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-27
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-36
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-23
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-36
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-29
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-35
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-23
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-35
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	4e-23
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	6e-35
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	8e-25
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-34
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-22
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-29
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-18
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-22
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	5e-18
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-22
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	5e-11
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-18
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	9e-10
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-17
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-08
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-07
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	3e-05
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	1e-04
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	2e-04
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	3e-04
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	4e-04
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	5e-04
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	4e-04
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	4e-04
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	7e-04
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	7e-04
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-04
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-04

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  178 bits (455), Expect = 2e-50
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 37/158 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           +++V D ++R V  G  G LL RG   + GY++ E+    +   D + RTG         
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG--------- 412

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   L  DGY  V GR KD I RGGE +  +E
Sbjct: 413 ----------------------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
           +E  +  HP V +A    +PD+ +GE   + I  ++ A
Sbjct: 445 VENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  133 bits (338), Expect = 4e-34
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
            L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + 
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475

Query: 461 IKLKENAKLNADDIRTFCKGK 481
           I  ++ A   A +++ F + +
Sbjct: 476 IIPRDEA-PKAAELKAFLRER 495

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  177 bits (451), Expect = 1e-49
 Identities = 44/158 (27%), Positives = 60/158 (37%), Gaps = 37/158 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           + K+VD   R VP G  G L  RG     GY++  +   +    D +  +G         
Sbjct: 371 EIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG--------- 421

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D      DG  +VVGRIKD I RGGE I  +E
Sbjct: 422 ----------------------------DLVQRTPDGNLRVVGRIKDQINRGGEKIASEE 453

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
           IE+ I  HP V+ A    + DE+ GE+    I  +   
Sbjct: 454 IEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE 491

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  134 bits (339), Expect = 3e-34
 Identities = 29/85 (34%), Positives = 42/85 (49%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
               DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+    
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484

Query: 461 IKLKENAKLNADDIRTFCKGKVSKF 485
           I  +          R   +  ++++
Sbjct: 485 IVSRNPELKAVVLRRHLMELGIAQY 509

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  173 bits (442), Expect = 5e-48
 Identities = 40/160 (25%), Positives = 58/160 (36%), Gaps = 37/160 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           +  V D     +P G  G L+ RG     GY++  Q        + +  +G         
Sbjct: 366 EVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG--------- 416

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   +  +GY  V GR KD I RGGE I  +E
Sbjct: 417 ----------------------------DLISIDPEGYITVQGREKDQINRGGEKIAAEE 448

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
           IE  +  HP V+ A    + DE MGE+    + +KE  + 
Sbjct: 449 IENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRA 488

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  129 bits (326), Expect = 2e-32
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
            +  +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE+    
Sbjct: 420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479

Query: 461 IKLKENAKLNADDIRTFCKGK 481
           + +KE  +  A  +R F + +
Sbjct: 480 LVVKEPLR--AVQVRRFLREQ 498

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  166 bits (422), Expect = 6e-46
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)

Query: 20  QAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
            A+V D    + +P G  G + ++G     GYW   +KTK     D +  TG        
Sbjct: 330 SARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG-------- 381

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D   + E GY  ++GR KD++I GG N+YPK
Sbjct: 382 -----------------------------DLGKIDERGYVHILGRGKDLVITGGFNVYPK 412

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           EIE  I   P V+E+   GVP    GE V   +   + A ++  +
Sbjct: 413 EIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQ 457

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  131 bits (333), Expect = 1e-33
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E GY  ++GR KD++I GG N+YPKEIE  I   P V+E+   GVP    GE V   +  
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVR 447

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
            + A ++   +     G+++KF
Sbjct: 448 DKGATIDEAQVLHGLDGQLAKF 469

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  161 bits (411), Expect = 2e-44
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 42/166 (25%)

Query: 20  QAKVVD---HNNRIVPFGTPGELLIRGH-CNMLGYWEDEQKTKETIGPDRWLRTGRYKKT 75
           + ++V      + IV  G  GEL++       +GY    Q T E +  D W RT      
Sbjct: 331 EVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTS----- 384

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
                                           D  V   +G  +++GR+ DMII GGENI
Sbjct: 385 --------------------------------DVAVWTPEGTVRILGRVDDMIISGGENI 412

Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           +P EIE  + T P V E    G+ D+R G+ V   +  +    L+A
Sbjct: 413 HPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  131 bits (331), Expect = 2e-33
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 401 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 460
           V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447

Query: 461 IKLKENAKLNADDIRTFCKG 480
           +  +    L+AD + TFC+ 
Sbjct: 448 VVPRLGETLSADALDTFCRS 467

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  149 bits (379), Expect = 6e-40
 Identities = 43/166 (25%), Positives = 62/166 (37%), Gaps = 40/166 (24%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
              VVD  +R +P G  GE+++RG     GYW +   T+     + W  TG         
Sbjct: 331 TVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTG--------- 380

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRI--KDMIIRGGENIYP 137
                                       D      DGY    GR   K++I  GGEN+YP
Sbjct: 381 ----------------------------DMGRFDADGYLFYAGRAPEKELIKTGGENVYP 412

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
            E+E  ++ HP + +A   GVPD +  E +      K    + A  
Sbjct: 413 AEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADA 458

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  117 bits (295), Expect = 2e-28
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 404 EDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 461
            DGY    GR   K++I  GGEN+YP E+E  ++ HP + +A   GVPD +  E +    
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVC 446

Query: 462 KLKENAKLNADDIRTFCKGKVSKF 485
             K    + AD +  F    ++++
Sbjct: 447 VCKPGESIAADALAEFVASLIARY 470

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  148 bits (377), Expect = 1e-39
 Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 41/152 (26%)

Query: 20  QAKVVDHNNRIVPF---GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
           + ++V+ +   +      + GE+ +RG      Y      T      D + RTG      
Sbjct: 334 ELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG------ 387

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGR-IKDMIIRGGENI 135
                                          D  V   DGY ++VGR   D+I  GG  I
Sbjct: 388 -------------------------------DMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
              EIE  +  HP V EA   G PD  +GE +
Sbjct: 417 GAGEIENALLEHPEVREAAVTGEPDPDLGERI 448

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  116 bits (293), Expect = 3e-28
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 398 DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 456
           D  V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE 
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447

Query: 457 VGISIKLKE-NAKLNADDIRTFCKGKVSKF 485
           +   I   +  A      +      +++  
Sbjct: 448 IVAWIVPADPAAPPALGTLADHVAARLAPH 477

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  147 bits (373), Expect = 4e-39
 Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 39/148 (26%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
              V   +  I   G  GE++I+    +  YW   + T++    + W RTG         
Sbjct: 347 DVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTG--------- 395

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   + ++GY  +  R+KDMII GGEN+YP E
Sbjct: 396 ----------------------------DIGEIDDEGYLYIKDRLKDMIISGGENVYPAE 427

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           IE  I   P V E    G+PDE+ GE  
Sbjct: 428 IESVIIGVPGVSEVAVIGLPDEKWGEIA 455

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  114 bits (289), Expect = 1e-27
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           ++GY  +  R+KDMII GGEN+YP EIE  I   P V E    G+PDE+ GE     +  
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
            +  +++   I  +C  +++++
Sbjct: 462 DQ-NEVSEQQIVEYCGTRLARY 482

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  140 bits (355), Expect = 2e-36
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
           ++ ++ D     VP G  G+L I+G    + YW + +K++ T     W+R+G        
Sbjct: 361 YEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSG-------- 411

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                        D++    +G     GR  DM+   G+ + P 
Sbjct: 412 -----------------------------DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPV 442

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK 178
           E+E  +  H  VLEA   GV       +    + LK    
Sbjct: 443 EVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKREFA 481

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  101 bits (253), Expect = 5e-23
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D++    +G     GR  DM+   G+ + P E+E  +  H  VLEA   GV       + 
Sbjct: 412 DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKT 470

Query: 458 GISIKLKENAK---LNADDIRTFCKGKVSKF 485
              + LK       + A++++ F K +++  
Sbjct: 471 RAFVVLKREFAPSEILAEELKAFVKDRLAPH 501

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  138 bits (349), Expect = 7e-36
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 44/158 (27%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
             K+ +           GEL+I+G   M GY      T      + +  TG         
Sbjct: 337 DVKIKN-----PNKEGHGELMIKGANVMNGYLYPTDLTGTFE--NGYFNTG--------- 380

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                       D   +  +GY  +  R KD+II GGENIYP +
Sbjct: 381 ----------------------------DIAEIDHEGYVMIYDRRKDLIISGGENIYPYQ 412

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
           IE   +  P + +A   G PD+  G+   +    + + 
Sbjct: 413 IETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI 450

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  119 bits (301), Expect = 2e-29
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
            +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+   +    
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           + +  ++   +  +    ++K+
Sbjct: 447 ESD--ISKAQLIAYLSKHLAKY 466

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  136 bits (346), Expect = 3e-35
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 38/167 (22%)

Query: 18  SFQAKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
           + + K+VD      +P   PGE+ IRG   M GY  D + T  TI  + WL TG      
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG------ 416

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                 IG+            +D    +V R+K++I   G  + 
Sbjct: 417 ---------------------DIGYI----------DDDDELFIVDRLKELIKYKGFQVA 445

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           P E+E  +  HP + +A   G+ DE  GE     +   E ++    E
Sbjct: 446 PAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDE 492

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  101 bits (254), Expect = 3e-23
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           +D    +V R+K++I   G  + P E+E  +  HP + +A   G+ DE  GE     +  
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
            E ++   D+I+ +   +V  +
Sbjct: 483 SEKSQATEDEIKQYISKQVIFY 504

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  136 bits (346), Expect = 3e-35
 Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 38/167 (22%)

Query: 18  SFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
            F+AKV+D    + +     GE+ ++G   M GY  + + TKE I  + WL TG      
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG------ 423

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                          D     E+ +  +V R+K +I   G  + 
Sbjct: 424 -------------------------------DIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           P E+E  +  HP++ +A   GVPD   GE  G  + L+    +   E
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKE 499

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  101 bits (253), Expect = 4e-23
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           +    +   ++  +   +VS  
Sbjct: 490 ESGKNMTEKEVMDYVASQVSNA 511

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  136 bits (344), Expect = 6e-35
 Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 42/170 (24%)

Query: 20  QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP----DRWLRTGRYKK 74
           + KV+   + R +  G  GE++IRG     GYW+ E++ +E         ++ RTG    
Sbjct: 366 ELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG---- 421

Query: 75  TSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGEN 134
                                   +GF      D     E+G+     R+K++I   G  
Sbjct: 422 -----------------------DVGFI-----D-----EEGFLHFQDRVKEVIKYKGYT 448

Query: 135 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED 184
           I P E+E  +  H  V++    G PDE  GE     I LK   +    E+
Sbjct: 449 IAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEE 498

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  106 bits (267), Expect = 8e-25
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           E+G+     R+K++I   G  I P E+E  +  H  V++    G PDE  GE     I L
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487

Query: 464 KEN--AKLNADDIRTFCKGKVSKF 485
           K     K++ +DI  + + ++S +
Sbjct: 488 KPEYRGKVDEEDIIEWVRERISGY 511

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  134 bits (340), Expect = 3e-34
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 38/167 (22%)

Query: 18  SFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
            F+AKVVD    + +     GEL +RG   M GY  + + T   I  D WL +G      
Sbjct: 368 FFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG------ 421

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                 I ++           ED +  +V R+K +I   G  + 
Sbjct: 422 ---------------------DIAYW----------DEDEHFFIVDRLKSLIKYKGYQVA 450

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           P E+E  +  HPN+ +A   G+PD+  GE     + L+    +   E
Sbjct: 451 PAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKE 497

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =   99 bits (250), Expect = 1e-22
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
           +    +   +I  +   +V+  
Sbjct: 488 EHGKTMTEKEIVDYVASQVTTA 509

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  121 bits (306), Expect = 2e-29
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 38/167 (22%)

Query: 18  SFQAKVVDHNN-RIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTS 76
           + + K+VD +    +    PGE+ IRGH  M GY  +   T ETI  D WL TG      
Sbjct: 410 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTG------ 463

Query: 77  FLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIY 136
                                 IG       D     +D    +V R+K++I   G  + 
Sbjct: 464 ---------------------DIGLI-----D-----DDDELFIVDRLKELIKYKGFQVA 492

Query: 137 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
           P E+E  +  HP++ +     + +E  GE     +   ++++L+  +
Sbjct: 493 PAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDD 539

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 19/82 (23%), Positives = 42/82 (51%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           +D    +V R+K++I   G  + P E+E  +  HP++ +     + +E  GE     +  
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529

Query: 464 KENAKLNADDIRTFCKGKVSKF 485
            ++++L+ DD++ F   +V  +
Sbjct: 530 SKDSELSEDDVKQFVSKQVVFY 551

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 99.9 bits (250), Expect = 1e-22
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 39/148 (26%)

Query: 20  QAKVVDHNNRIVPF-G-TPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           + +V D   R VP  G   GE+ ++G     GY+ +E+ T+  + PD + RTG       
Sbjct: 365 RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG------- 417

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D  V  E+GY ++  R+KD+I  GGE I  
Sbjct: 418 ------------------------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGE 165
            ++E  +  HP V EA    +P  +  E
Sbjct: 448 VDLENALMGHPKVKEAAVVAIPHPKWQE 475

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 85.6 bits (213), Expect = 5e-18
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 375 KKYLREEENITVPDSAGRSIFEKDQF-------VLREDGYGQVVGRIKDMIIRGGENIYP 427
             Y   EE       A RS    D F       V  E+GY ++  R+KD+I  GGE I  
Sbjct: 395 GGYYGNEE-------ATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447

Query: 428 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
            ++E  +  HP V EA    +P  +  E     +  +       +      K   +K+
Sbjct: 448 VDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKW 505

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 86.5 bits (215), Expect = 3e-18
 Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 43/154 (27%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGH-----CNMLGYWEDEQKTKETIGPDRWLRTGRYK 73
           +  +++D    ++P GT G++ IR           GY ++  KT   I    +   G   
Sbjct: 383 YDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLG--- 438

Query: 74  KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
                                             D+ +  EDGY Q +GR  D+I   G 
Sbjct: 439 ----------------------------------DRGIKDEDGYFQFMGRADDIINSSGY 464

Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
            I P E+E  +  HP V+E      PD   GE V
Sbjct: 465 RIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

Query: 458 GISIKLKENAKLN-----ADDIRTFCKGKVS 483
              + L      +       +++   K   +
Sbjct: 499 KAFVVLASQFLSHDPEQLTKELQQHVKSVTA 529

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 50/160 (31%)

Query: 20  QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG--------PDRWLRTG 70
           + K++D        F   GE+ ++ +    GYW   ++T+               +LRTG
Sbjct: 382 EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441

Query: 71  RYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIR 130
                                       +GF +           +    V GRIKD+II 
Sbjct: 442 ---------------------------DLGFLH-----------ENELYVTGRIKDLIII 463

Query: 131 GGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 167
            G+N YP++IE  +  +  + +     A+ + +E   +  
Sbjct: 464 YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 457
           V GRIKD+II  G+N YP++IE  +  +  + +     A+ + +E   +  
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 43/154 (27%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCN-----MLGYWEDEQKTKETIGPDRWLRTGRYK 73
           ++ +++D + R+   G  GE++I           + Y +D ++T+ET     +  TG   
Sbjct: 402 YKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG-YYHTG--- 457

Query: 74  KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
                                             D   + EDGY   VGR  D+I   G 
Sbjct: 458 ----------------------------------DMAWMDEDGYLWFVGRADDIIKTSGY 483

Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
            + P E+E  +  HP VLE    GVPD   G+ +
Sbjct: 484 KVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+ +  +I L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523

Query: 464 KENAKLN---ADDIRTFCK 479
            ++   +    ++++   K
Sbjct: 524 TKDYTPSDSLKNELQDHVK 542

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 20  QAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-----------PDRWL 67
             ++VD       P GT GE+ + G     GYW+   +++ T G              WL
Sbjct: 403 IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462

Query: 68  RTG 70
           RTG
Sbjct: 463 RTG 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 60/467 (12%), Positives = 127/467 (27%), Gaps = 156/467 (33%)

Query: 66  WLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQ--QQIGFFYSLVSDQFVLREDGYGQVVGR 123
           WL          +            L+  Q+   QI   ++  SD     +     +   
Sbjct: 186 WLNLKNCNSPETV------------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 124 IKDMIIRGGENIYPK------EIEEFIQTHPNVLEAYAYG-----------VPDERMGEE 166
           ++ ++       Y         ++     +     A+              V D  +   
Sbjct: 234 LRRLLK---SKPYENCLLVLLNVQ-----NAKAWNAFNLSCKILLTTRFKQVTD-FLSAA 284

Query: 167 VGISIKLKENAK-LNAYEDKSISSDY---------HEFET---MYDSIMA-----HPNRT 208
               I L  ++  L   E KS+   Y          E  T      SI+A          
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 209 TPYYQWWSYDPNQSYV--THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAH------YN 260
              ++  + D   + +  + +   P +Y R ++     S+ P +  A +         ++
Sbjct: 345 D-NWKHVNCDKLTTIIESSLNVLEPAEY-RKMF--DRLSVFPPS--AHIPTILLSLIWFD 398

Query: 261 QKSDIDWEYADKCEKS--MQGWAKTLSSEYNSY--------AGPVTLRRNLIDPLEIVQN 310
                     +K  K   ++   K  +    S              L R+++D       
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD------- 451

Query: 311 RIDDVEYEFQEKMFKDVKNYLITPALKGL------YHFKK------------------WM 346
                 Y   +       + LI P L         +H K                   ++
Sbjct: 452 -----HYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 347 NPKFSTTTRKVALTWPNS---MDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLR 403
             K     R  +  W  S   +++  ++  YK Y+ + +                     
Sbjct: 504 EQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPK------------------- 540

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPN---VLEAY 444
              Y ++V  I D + +  EN+   +  + ++      +     EA+
Sbjct: 541 ---YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 48/387 (12%), Positives = 111/387 (28%), Gaps = 114/387 (29%)

Query: 123 RIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAY 182
           R+   ++   E +  K +EE ++   N      Y      +                   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLR--IN------YKFLMSPI-----------------KT 100

Query: 183 EDKSISSDYHEFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTHDNGFPVDYN---RALY 239
           E +  S     +    D +               Y+ NQ +  ++      Y    +AL 
Sbjct: 101 EQRQPSMMTRMYIEQRDRL---------------YNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 240 SLK---------M-----SSLLPHNFSAEVEAHYNQKSDID----WEYADKCEKS----- 276
            L+         +     + +     + +V   Y  +  +D    W     C        
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 277 -MQGWAKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPA 335
            +Q     +   + S +   +   N+   +  +Q  +  +    + K +++    L+   
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSS---NIKLRIHSIQAELRRL---LKSKPYENC--LLV--- 249

Query: 336 LKGLYHFKKW--MNPKFST--TTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAG 391
           L  + + K W   N       TTR   +T  + + +            +  ++T+     
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAA----TTTHISLDHHSMTLTPDEV 303

Query: 392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYP---KEIEEFIQTHPNVLEAYAYGV 448
           +S+  K             +      + R      P     I E I+      + + + V
Sbjct: 304 KSLLLK------------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-V 350

Query: 449 PDERMGEEVGISIKLKENAKLNADDIR 475
             +++   +  S+       L   + R
Sbjct: 351 NCDKLTTIIESSLN-----VLEPAEYR 372

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 52/384 (13%), Positives = 106/384 (27%), Gaps = 120/384 (31%)

Query: 4   MNPTDLQFSTLSSSSFQAKVVDHNNRIVP----FGTP------GELLIRGHCNMLGYWED 53
           ++   +  +     S   K +D   + +P       P       E + R        W  
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLAT---W-- 344

Query: 54  EQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLR 113
                     D W      K T+ + S++     L+P + ++      F  L     V  
Sbjct: 345 ----------DNWKHVNCDKLTTIIESSLN---VLEPAEYRKM-----FDRL----SVFP 382

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK- 172
                               +I P            +L    + V    +   V    K 
Sbjct: 383 PS-----------------AHI-P----------TILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 173 --LKENAKLNAYEDKSISSDYH----EFETMYDSIMAHPNRTTPYYQWWSYDPNQSYVTH 226
             +++  K +     SI  +          ++ SI+ H N     +      P       
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYL---- 469

Query: 227 DNGFPVDYNRALYSLK------MSSLLPHNFSAEVEAHYNQKSDIDWEYADKCEKSMQGW 280
           D  F   Y+   + LK        +L    F            D  +         ++  
Sbjct: 470 DQYF---YSHIGHHLKNIEHPERMTLFRMVF-----------LDFRF---------LE-- 504

Query: 281 AKTLSSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKDVKNYLITPALKGLY 340
            K +  +  ++    ++   L   L+  +  I D + ++ E++   + ++L       L 
Sbjct: 505 QK-IRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKY-ERLVNAILDFLPKIEEN-LI 560

Query: 341 HFKKWMNPKFSTTTRKVALTWPNS 364
             K        T   ++AL   + 
Sbjct: 561 CSK-------YTDLLRIALMAEDE 577

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 408 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 467
            ++ GR  DM+I  G N++P +IEE +     +   Y   +  E   + + ++++     
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385

Query: 468 KLNADDIRTFCK 479
             +   I+   +
Sbjct: 386 APDTAAIQVAKQ 397

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 118 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
            ++ GR  DM+I  G N++P +IEE +     +   Y
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHY 362

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 463
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +   + L
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 565

Query: 464 KENAKLNADDIRTFCKGKVSK 484
               +  + ++    +  V K
Sbjct: 566 NHGEE-PSPELYAEVRNWVRK 585

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 559

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
           + GR  DM I  G NI+P ++E+ +   P +   Y
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
           + GR  DM I  G NI+P ++E+ +   P +   Y
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 114 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 167
           +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  G+ V
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 404 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  G+ V
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 154
           + GR  DM+I  G N++P +IEE +   P +   +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 410 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 444
           + GR  DM+I  G N++P +IEE +   P +   +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	485
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.97
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.96
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.96
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.96
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.94
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.94
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.93
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.93
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.93
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.93
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.92
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.92
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.92
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.92
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.92
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.92
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.92
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.91
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.91
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.91
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.91
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.91
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.91
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.91
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.9
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.9
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.9
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.9
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.89
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.89
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.88
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.88
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.87
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.86
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.84
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.74
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.73
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.72
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.61
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.49
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.34
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.16
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.11
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.04
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.94
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.8
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.68
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	97.5
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	97.04
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	96.98
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.7
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	96.48

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=8.7e-39  Score=340.44  Aligned_cols=249  Identities=18%  Similarity=0.160  Sum_probs=210.0

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      .++-+.++|||||||.||.++++|.+...........+.++..+..... |++|.++...                    
T Consensus       154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~  233 (503)
T 4fuq_A          154 ADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDP  233 (503)
T ss_dssp             TTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCH
T ss_pred             CCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCH
Confidence            4555778999999999999999999988888777776666633322222 6666554320                    


Q ss_pred             --------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC--
Q psy5016         285 --------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF--  324 (485)
Q Consensus       285 --------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~--  324 (485)
                                                            ..++||+++++++.+.+.+.++    ..+++.||+||++.  
T Consensus       234 ~~~~~~i~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~~~~  309 (503)
T 4fuq_A          234 DKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG----HAVLERYGMTETNMNT  309 (503)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS----CCEEECCEETTTEECB
T ss_pred             HHHHHHHhhcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC----CCccceEcccccCccc
Confidence                                                  0118899999999999999886    45679999999743  


Q ss_pred             --CCccCccccCcccccCCcEEEE-c-C-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCc
Q psy5016         325 --KDVKNYLITPALKGLYHFKKWM-N-P-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKD  398 (485)
Q Consensus       325 --~~~~~~~~~s~G~p~pg~~v~I-d-~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD  398 (485)
                        .......++++|+|+|+++++| | + +..+++|++|||+|+|+   +++.||| +++.+++.|   ..+| ||+|||
T Consensus       310 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~~~TGD  382 (503)
T 4fuq_A          310 SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGP---NVFKGYWRMPEKTKSEF---RDDG-FFITGD  382 (503)
T ss_dssp             CCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHTB---CTTS-CEEEEE
T ss_pred             ccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECC---chhhhhcCChhhhHhhh---CCCC-CeEcce
Confidence              2223455778999999999999 7 3 56799999999999999   9999999 899999888   5678 999999


Q ss_pred             eEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHH
Q psy5016         399 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC  478 (485)
Q Consensus       399 ~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l  478 (485)
                      +|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|+++++...+.++++++|
T Consensus       383 l~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  462 (503)
T 4fuq_A          383 LGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGL  462 (503)
T ss_dssp             EEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             eEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             HhhCCCC
Q psy5016         479 KGKVSKF  485 (485)
Q Consensus       479 ~~~l~~y  485 (485)
                      +++|++|
T Consensus       463 ~~~L~~~  469 (503)
T 4fuq_A          463 DGQLAKF  469 (503)
T ss_dssp             BTTBCGG
T ss_pred             HhhcccC
Confidence            9999876

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.5e-38  Score=341.19  Aligned_cols=251  Identities=16%  Similarity=0.133  Sum_probs=210.2

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhc----ccCCCcccccchh-hccchhhhHhh--------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ----KSDIDWEYADKCE-KSMQGWAKTLS--------------  285 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~----~~~~~~~~~~~~~-pl~~~~~~~~~--------------  285 (485)
                      ..++-+.++|||||||.||.++++|.+..........    ...++..+...+. |++|.++....              
T Consensus       176 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~  255 (536)
T 3ni2_A          176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM  255 (536)
T ss_dssp             CTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC
T ss_pred             CccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc
Confidence            3455567899999999999999999988776655433    2334422222222 78887665300              


Q ss_pred             ----------------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCcccccccc
Q psy5016         286 ----------------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEF  319 (485)
Q Consensus       286 ----------------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~  319 (485)
                                                                    .++||+++++++.+++.+.|+.   ..+++.||+
T Consensus       256 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~---~~l~~~YG~  332 (536)
T 3ni2_A          256 PKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQ---ARLGQGYGM  332 (536)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTT---SEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCC---CCccccccc
Confidence                                                          0189999999999999998853   456799999


Q ss_pred             CCCCC---------CCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016         320 QEKMF---------KDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV  386 (485)
Q Consensus       320 TEt~~---------~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~  386 (485)
                      ||++.         .......++++|+|+++++++| |+  +..+++|++|||+|+|+   +++.||| +++.+++.|  
T Consensus       333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~~~~--  407 (536)
T 3ni2_A          333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD---QIMKGYLNDPEATSRTI--  407 (536)
T ss_dssp             GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB--
T ss_pred             cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCc---ccchhhcCChhHHHhhc--
Confidence            99752         1223456789999999999999 74  56799999999999999   9999999 899998888  


Q ss_pred             cCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         387 PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       387 ~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                       +.+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|+..++
T Consensus       408 -~~~g-~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~  485 (536)
T 3ni2_A          408 -DKEG-WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK  485 (536)
T ss_dssp             -CTTS-CEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred             -cCCC-ceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC
Confidence             5678 99999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCHHHHHHHHHhhCCCC
Q psy5016         467 AKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~y  485 (485)
                      ...+.++|+++|+++|+.|
T Consensus       486 ~~~~~~~l~~~l~~~l~~~  504 (536)
T 3ni2_A          486 SQATEDEIKQYISKQVIFY  504 (536)
T ss_dssp             CCCCHHHHHHHHHTTSCGG
T ss_pred             CCCCHHHHHHHHHHhccCC
Confidence            8888999999999999876

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.7e-37  Score=330.82  Aligned_cols=250  Identities=18%  Similarity=0.120  Sum_probs=206.4

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccch-hhccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKC-EKSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~-~pl~~~~~~~~-------------------  284 (485)
                      .....+.++|||||||.||.++++|...........+.++++..+...+ .|++|.++...                   
T Consensus       153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~  232 (505)
T 3nyq_A          153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFS  232 (505)
T ss_dssp             CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCC
T ss_pred             CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence            3445577899999999999999999998888877776666663333222 26666655420                   


Q ss_pred             -------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         285 -------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       285 -------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                 ..++||+++++++.+++.+.++    ..+++.||+||
T Consensus       233 ~~~~~~~i~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~----~~~~~~YG~TE  308 (505)
T 3nyq_A          233 TEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG----RRVIERYGMTE  308 (505)
T ss_dssp             HHHHHHHHTTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS----CCCEEEEEETT
T ss_pred             hHHHHHHHhhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC----Ceeecccchhh
Confidence                                                       0117899999999999998876    45679999999


Q ss_pred             CCC----CCccCccccCcccccCCcEEEE-cC-CCCCCC---CCceEEEEecCCCCccccccc-CcccccccccccCCCC
Q psy5016         322 KMF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTT---RKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAG  391 (485)
Q Consensus       322 t~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~---g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g  391 (485)
                      ++.    ........+++|+|+++++++| |+ +.+++.   |++|||+|+|+   +++.||| +++.+++.|   ..+|
T Consensus       309 ~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g  382 (505)
T 3nyq_A          309 TLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGP---NLFTEYLNRPDATAAAF---TEDG  382 (505)
T ss_dssp             TEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEEST---TSCCEETTCHHHHHHTB---CTTS
T ss_pred             cccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecC---chhhhhCCChhHhhhhh---cCCC
Confidence            742    2333456789999999999999 65 555654   89999999999   9999999 899999888   5678


Q ss_pred             CeEecCceEEEecCCeEEEEecC-CCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcC-CCCC
Q psy5016         392 RSIFEKDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE-NAKL  469 (485)
Q Consensus       392 ~~~~TGD~~~~d~~G~l~i~GR~-~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~-~~~~  469 (485)
                       ||+|||+|++|+||+++|+||+ ||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|++.+ +...
T Consensus       383 -~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~  461 (505)
T 3nyq_A          383 -FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP  461 (505)
T ss_dssp             -CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCC
T ss_pred             -CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCC
Confidence             9999999999999999999998 589999999999999999999999999999999999999999999999986 4467


Q ss_pred             CHHHHHHHHHhhCCCC
Q psy5016         470 NADDIRTFCKGKVSKF  485 (485)
Q Consensus       470 ~~~~l~~~l~~~l~~y  485 (485)
                      +.++|+++|+++|++|
T Consensus       462 ~~~~l~~~l~~~L~~~  477 (505)
T 3nyq_A          462 ALGTLADHVAARLAPH  477 (505)
T ss_dssp             CHHHHHHHHHHHTCGG
T ss_pred             CHHHHHHHHHhhCCCC
Confidence            7899999999999876

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1e-37  Score=335.69  Aligned_cols=249  Identities=16%  Similarity=0.129  Sum_probs=208.2

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcc---cCCCcccccchh-hccchhhhHh------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK---SDIDWEYADKCE-KSMQGWAKTL------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~---~~~~~~~~~~~~-pl~~~~~~~~------------------  284 (485)
                      .+-+.++|||||||.||.++++|.+...........   ..++..+...+. |++|.++...                  
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~G~~~v~~~~~~  271 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFD  271 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHhcCcEEEEcCCCC
Confidence            445677999999999999999999887777665554   445422222222 7777665420                  


Q ss_pred             -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                               ..++||+++++++.+++.+.|+.   ..+++.||+||++
T Consensus       272 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~i~~~YG~TE~~  348 (548)
T 2d1s_A          272 EETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNL---PGVRQGYGLTETT  348 (548)
T ss_dssp             HHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC---SCCEEEEECGGGS
T ss_pred             HHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCC---Cceeecccccccc
Confidence                                                     00179999999999999998853   4567999999975


Q ss_pred             C----CCccCccccCcccccCCcEEEE-c-C-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         324 F----KDVKNYLITPALKGLYHFKKWM-N-P-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       324 ~----~~~~~~~~~s~G~p~pg~~v~I-d-~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      .    ........+++|+|+|+++++| | + +..+++|+.|||+++|+   +++.||| +++.+++.|   +.+| ||+
T Consensus       349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~~~  421 (548)
T 2d1s_A          349 SAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP---MLMKGYVNNPEATKELI---DEEG-WLH  421 (548)
T ss_dssp             SEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB---CTTS-CEE
T ss_pred             ceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCH---HHhhhhcCChHHhhhcc---cCCc-EEE
Confidence            3    1122356789999999999999 7 3 66799999999999999   9999999 888888888   5678 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR  475 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  475 (485)
                      |||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+++++...+.++|+
T Consensus       422 TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  501 (548)
T 2d1s_A          422 TGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVM  501 (548)
T ss_dssp             EEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred             ccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999899999999999887778899999


Q ss_pred             HHHHhhCCCC
Q psy5016         476 TFCKGKVSKF  485 (485)
Q Consensus       476 ~~l~~~l~~y  485 (485)
                      ++|+++|++|
T Consensus       502 ~~~~~~l~~~  511 (548)
T 2d1s_A          502 DYVASQVSNA  511 (548)
T ss_dssp             HHHHTTSCGG
T ss_pred             HHHHHhcccc
Confidence            9999999875

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=6.8e-38  Score=336.99  Aligned_cols=256  Identities=14%  Similarity=0.114  Sum_probs=189.8

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS--------------------  285 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~--------------------  285 (485)
                      +..+.++|||||||.||.++++|.+...........++++..+...+. |++|.++....                    
T Consensus       180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  259 (549)
T 3g7s_A          180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEM  259 (549)
T ss_dssp             TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHH
T ss_pred             CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHH
Confidence            445677999999999999999999988888777776666633332222 77776554300                    


Q ss_pred             -----------------------------------------hhccCCCCCHHHHHHHHhhhhhc-c--cCccccccccCC
Q psy5016         286 -----------------------------------------SEYNSYAGPVTLRRNLIDPLEIV-Q--NRIDDVEYEFQE  321 (485)
Q Consensus       286 -----------------------------------------~l~~g~~~~~~l~~~~~~~~~~~-~--~~~i~~~YG~TE  321 (485)
                                                               .++||+++++++.+++.+.+... +  ...+++.||+||
T Consensus       260 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE  339 (549)
T 3g7s_A          260 LAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE  339 (549)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGG
T ss_pred             HHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccc
Confidence                                                     01789999999999998873211 1  144579999999


Q ss_pred             CCC-----CCccCccccCcccccCCcEEEE-c-C-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016         322 KMF-----KDVKNYLITPALKGLYHFKKWM-N-P-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       322 t~~-----~~~~~~~~~s~G~p~pg~~v~I-d-~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      ++.     ........+++|+|+++++++| | + +..+++|+.|||+|+|+   +++.||| +++.+++.|.....+++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~g~~  416 (549)
T 3g7s_A          340 ACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGP---NIFKGYWKREKENQECWWYDEKGRK  416 (549)
T ss_dssp             GSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEEST---TSCSEETTCTTGGGTSEEECTTCCE
T ss_pred             cchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECc---chhhhhCCChhhhhhhhhccCCCCc
Confidence            753     1122256789999999999999 6 3 56689999999999999   9999999 89999888732223335


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC--CCCC
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN--AKLN  470 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~--~~~~  470 (485)
                      ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|+++++  ...+
T Consensus       417 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~  496 (549)
T 3g7s_A          417 FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD  496 (549)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCC
T ss_pred             eEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999886  5678


Q ss_pred             HHHHHHHHHhhCCCC
Q psy5016         471 ADDIRTFCKGKVSKF  485 (485)
Q Consensus       471 ~~~l~~~l~~~l~~y  485 (485)
                      .++|+++|+++|++|
T Consensus       497 ~~~l~~~l~~~L~~~  511 (549)
T 3g7s_A          497 EEDIIEWVRERISGY  511 (549)
T ss_dssp             HHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHhccCc
Confidence            899999999999986

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.2e-37  Score=329.49  Aligned_cols=248  Identities=19%  Similarity=0.218  Sum_probs=204.5

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCC--Ccccccchh-hccchhhhH-------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDI--DWEYADKCE-KSMQGWAKT-------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~--~~~~~~~~~-pl~~~~~~~-------------------  283 (485)
                      .++.+.++|||||||.||.++++|.+...........+++  ...+...+. |++|.++..                   
T Consensus       152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~  231 (504)
T 1t5h_X          152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEF  231 (504)
T ss_dssp             TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSC
T ss_pred             CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCC
Confidence            3455678999999999999999999988877776666665  322222222 777766542                   


Q ss_pred             --------------------------h-----h------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         284 --------------------------L-----S------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       284 --------------------------~-----~------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                                +     .            .++||+++++++.+.+.+.++    ..+++.||+|
T Consensus       232 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~----~~~~~~YG~T  307 (504)
T 1t5h_X          232 RPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP----GEKVNIYGTT  307 (504)
T ss_dssp             CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC----SEEEEEEEET
T ss_pred             CHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC----cceeeeeccc
Confidence                                      0     0            017899999999999999886    3457999999


Q ss_pred             CCCCCC-ccCccccCcccccCCcEEEE-cC-C---CCCCCCCceEEEEe-cCCCCccccccc-CcccccccccccCCCCC
Q psy5016         321 EKMFKD-VKNYLITPALKGLYHFKKWM-NP-K---FSTTTRKVALTWPN-SMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       321 Et~~~~-~~~~~~~s~G~p~pg~~v~I-d~-~---~~~~~g~~Gel~v~-g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      |+.... ......+++|+|+++++++| |+ +   ..+++|+.|||+|+ |+   +++.||| +++.+++.|    .+| 
T Consensus       308 E~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~---~~~~GY~~~~~~t~~~f----~~g-  379 (504)
T 1t5h_X          308 EAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD---SAFVGYLNQPQATAEKL----QDG-  379 (504)
T ss_dssp             TTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCT---TSCCCBTTCHHHHHHHE----ETT-
T ss_pred             cccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCc---eeeceecCCchhhhhhh----cCC-
Confidence            973211 11345689999999999999 65 3   66899999999999 88   9999999 888898888    578 


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD  472 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  472 (485)
                      ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+++++...+.+
T Consensus       380 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~  459 (504)
T 1t5h_X          380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD  459 (504)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHH
T ss_pred             ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999887778899


Q ss_pred             HHHHHHHh-hCCCC
Q psy5016         473 DIRTFCKG-KVSKF  485 (485)
Q Consensus       473 ~l~~~l~~-~l~~y  485 (485)
                      +|+++|++ +|++|
T Consensus       460 ~l~~~~~~~~L~~~  473 (504)
T 1t5h_X          460 ALDTFCRSSELADF  473 (504)
T ss_dssp             HHHHHHHTSSCCGG
T ss_pred             HHHHHHhhccCccc
Confidence            99999999 89876

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=5.4e-37  Score=332.33  Aligned_cols=189  Identities=20%  Similarity=0.185  Sum_probs=167.2

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTW  361 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~  361 (485)
                      +||+++++++.+++.+.++    ..+++.||+||++.    ......+++++|+|+|+++++| |+ +..+++|+.|||+
T Consensus       348 ~gGe~l~~~~~~~~~~~~g----~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~  423 (580)
T 3etc_A          348 VAGEPLNPEVFNRFLEFTG----IKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIV  423 (580)
T ss_dssp             ECSSCCCHHHHHHHHHHHS----CCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred             EccCCCCHHHHHHHHHHhC----CeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEE
Confidence            8999999999999999886    45679999999753    1223456789999999999999 65 6779999999999


Q ss_pred             EecCC--CCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         362 PNSMD--SEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       362 v~g~~--~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      |+|+.  |.++++||| +++.+++.|    .+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||
T Consensus       424 v~~~~g~~~~~~~gY~~~p~~t~~~f----~~g-wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p  498 (580)
T 3etc_A          424 INTMEGKPVGLFVHYGKDPERTEETW----HDG-YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP  498 (580)
T ss_dssp             EECTTCCCTTCCCEETTCHHHHHHHE----ETT-EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred             EecCCCCCCeeeccccCCHhHHHhhc----CCC-EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence            99721  118999999 999999988    578 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HHHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~y  485 (485)
                      +|.+|+|++++++..|+.+.|+|+++++...+   .++|+++|+++|++|
T Consensus       499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~  548 (580)
T 3etc_A          499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPY  548 (580)
T ss_dssp             TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGG
T ss_pred             CeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCc
Confidence            99999999999999999999999999876544   368999999999876

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.6e-37  Score=333.54  Aligned_cols=249  Identities=15%  Similarity=0.160  Sum_probs=206.0

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ..++-+.++|||||||.||.++++|.+...........+.++..+...+. |++|.++...                   
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~  259 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSP  259 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSS
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCC
Confidence            34555778999999999999999999887777766666666533332222 7777655420                   


Q ss_pred             ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                                ..++||+++++++.+++.+.++    ..+++.||+||+
T Consensus       260 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~----~~~~~~YG~TE~  335 (539)
T 1mdb_A          260 SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG----CTLQQVFGMAEG  335 (539)
T ss_dssp             SHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC----SEEEEEEECTTS
T ss_pred             CHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC----CcEEEEEcCCCC
Confidence                                                      0018899999999999998876    456799999996


Q ss_pred             CCCC-----ccCccccCcccccCCc-EEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCe
Q psy5016         323 MFKD-----VKNYLITPALKGLYHF-KKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRS  393 (485)
Q Consensus       323 ~~~~-----~~~~~~~s~G~p~pg~-~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~  393 (485)
                      +...     ......+++|+|+++. +++| |+ +..+++|++|||+|+|+   ++++||| +++.|++.|   ..+| |
T Consensus       336 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~  408 (539)
T 1mdb_A          336 LVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGP---YTIRGYYKAEEHNAASF---TEDG-F  408 (539)
T ss_dssp             CEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECT---TSCSSCTTCHHHHHHHB---CTTS-C
T ss_pred             cccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCc---ccchhhcCChhhhhhhc---cCCC-C
Confidence            4211     1123457899999765 8999 55 67799999999999999   9999999 888888888   5678 9


Q ss_pred             EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHH
Q psy5016         394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADD  473 (485)
Q Consensus       394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~  473 (485)
                      |+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+|++++ ...+.++
T Consensus       409 ~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~  487 (539)
T 1mdb_A          409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAE  487 (539)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHH
T ss_pred             eecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999988999999999873 4577899


Q ss_pred             HHHHHHhh-CCCC
Q psy5016         474 IRTFCKGK-VSKF  485 (485)
Q Consensus       474 l~~~l~~~-l~~y  485 (485)
                      |+++|+++ |++|
T Consensus       488 l~~~l~~~~L~~~  500 (539)
T 1mdb_A          488 LKAFLRERGLAAY  500 (539)
T ss_dssp             HHHHHHHTTCCGG
T ss_pred             HHHHHHhCCCCcc
Confidence            99999997 8876

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=3.7e-38  Score=339.14  Aligned_cols=248  Identities=16%  Similarity=0.123  Sum_probs=132.7

Q ss_pred             CCcceeeccccccCCcEEEecccchhhHHHhhhcc---cCCCcccccchh-hccchhhhHh-------------------
Q psy5016         228 NGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK---SDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       228 ~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~---~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      .-+.++|||||||.||.++++|.+...........   ..++..+...+. |++|.++...                   
T Consensus       191 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~  270 (550)
T 3rix_A          191 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEE  270 (550)
T ss_dssp             SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred             CEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCH
Confidence            34667999999999999999999887776655543   334422222222 7777665430                   


Q ss_pred             ----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         285 ----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       285 ----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                              ..++||+++++++.+++.+.|+.   ..+++.||+||++.
T Consensus       271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~v~~~YG~TE~~~  347 (550)
T 3rix_A          271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL---PGIRQGYGLTETTS  347 (550)
T ss_dssp             HHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC---SCCEEEEECGGGSS
T ss_pred             HHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCC---CccccccCcCcccc
Confidence                                                    00189999999999999999873   34679999999753


Q ss_pred             ----CCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEec
Q psy5016         325 ----KDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFE  396 (485)
Q Consensus       325 ----~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~T  396 (485)
                          ........+++|+|+|+++++| |+  +..+++|+.|||+|+|+   +++.||| +++.+++.|   +.+| ||+|
T Consensus       348 ~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~~---~~~g-~~~T  420 (550)
T 3rix_A          348 AILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP---MIMSGYVNNPEATNALI---DKDG-WLHS  420 (550)
T ss_dssp             EEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB---CTTS-CEEE
T ss_pred             ceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCC---CcchhhcCChhhhhhhc---CCCC-Ceec
Confidence                2233456789999999999999 64  56799999999999999   9999999 888888877   5778 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT  476 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  476 (485)
                      ||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..|+.++++|+++++...+.++|++
T Consensus       421 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  500 (550)
T 3rix_A          421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD  500 (550)
T ss_dssp             EEEEEECTTCCEEEC-----------------------------------------------------------------
T ss_pred             CcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998887778889999


Q ss_pred             HHHhhCCCC
Q psy5016         477 FCKGKVSKF  485 (485)
Q Consensus       477 ~l~~~l~~y  485 (485)
                      +|+++|++|
T Consensus       501 ~~~~~l~~~  509 (550)
T 3rix_A          501 YVASQVTTA  509 (550)
T ss_dssp             ---------
T ss_pred             HHHHhcccc
Confidence            999988764

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5.1e-37  Score=327.88  Aligned_cols=246  Identities=18%  Similarity=0.194  Sum_probs=203.7

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS------------------  285 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~------------------  285 (485)
                      ..+..+.++|||||||.||.++++|.+.......+...++++..+...+. |++|.++....                  
T Consensus       168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~  247 (517)
T 3r44_A          168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDA  247 (517)
T ss_dssp             CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred             CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCH
Confidence            34556778999999999999999999998888887777777643333332 77776655310                  


Q ss_pred             -----------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         286 -----------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       286 -----------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                               .++||+++++++.+.+.+. +    ..+++.||+||++.
T Consensus       248 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~----~~~~~~YG~TE~~~  322 (517)
T 3r44_A          248 TKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-N----IEVVQGYALTESCG  322 (517)
T ss_dssp             HHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-T----CEEEEEEECGGGTT
T ss_pred             HHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-C----CcEEEeeccccccc
Confidence                                                     1189999999999998876 3    45679999999743


Q ss_pred             C------CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         325 K------DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       325 ~------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      .      .......+++|+|+++++++| |+ +..++.| .|||+|+|+   +++.||| +++.+++.|    .+| ||+
T Consensus       323 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~---~v~~GY~~~p~~t~~~f----~~g-~~~  393 (517)
T 3r44_A          323 GGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSD---ILLKEYWNRPEATRDAF----DNG-WFR  393 (517)
T ss_dssp             CEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEET---TSCSEETTCHHHHHHTE----ETT-EEE
T ss_pred             ceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCc---chhhhhCCChhhhHhhh----cCC-CEe
Confidence            1      122456789999999999999 65 4556777 899999999   9999999 899999988    578 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR  475 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  475 (485)
                      |||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.++++| +.++...+.++|+
T Consensus       394 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~  472 (517)
T 3r44_A          394 TGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIV  472 (517)
T ss_dssp             EEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHH
T ss_pred             cceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998899888888 5666678899999


Q ss_pred             HHHHhhCCCC
Q psy5016         476 TFCKGKVSKF  485 (485)
Q Consensus       476 ~~l~~~l~~y  485 (485)
                      ++|+++|++|
T Consensus       473 ~~l~~~L~~~  482 (517)
T 3r44_A          473 EYCGTRLARY  482 (517)
T ss_dssp             HHHHHHSCGG
T ss_pred             HHHHHhCCCC
Confidence            9999999876

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.5e-36  Score=333.11  Aligned_cols=194  Identities=13%  Similarity=0.096  Sum_probs=166.5

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC------CccCccccCcccccCCcEEEE-cC-CCCCCCCCceE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK------DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVAL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~------~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Ge  359 (485)
                      ++|+++++++++++.+.++... ..+++.||+||++..      .....+++++|+|++|++++| |+ +.+++.|+.||
T Consensus       385 ~gGe~l~~~~~~~~~~~~g~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GE  463 (652)
T 1pg4_A          385 SVGEPINPEAWEWYWKKIGKEK-CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGN  463 (652)
T ss_dssp             EESSCCCHHHHHHHHHHTTTTC-SCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEE
T ss_pred             EecCCCCHHHHHHHHHHhCCCC-CcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEE
Confidence            7899999999999999886322 345799999996421      112356789999999999999 65 67799999999


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCC
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  438 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~  438 (485)
                      |+|+|++| ++++||| +++.+...+. ...+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||
T Consensus       464 l~i~g~~p-~~~~gY~~~~e~~~~~~~-~~~~g-~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p  540 (652)
T 1pg4_A          464 LVITDSWP-GQARTLFGDHERFEQTYF-STFKN-MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP  540 (652)
T ss_dssp             EEECSCCT-TCCCEETTCHHHHHHHHH-SSSTT-SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHST
T ss_pred             EEEccCCC-chhhhhcCCHHHHHhhhh-hcCCC-EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence            99999665 9999999 7877766541 12367 9999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HHHHHHHHHhhCCCC
Q psy5016         439 NVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF  485 (485)
Q Consensus       439 ~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~y  485 (485)
                      +|.+|+|++++++..|+.++|||+++++...+   .++|+++|+++|++|
T Consensus       541 ~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~  590 (652)
T 1pg4_A          541 KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPL  590 (652)
T ss_dssp             TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             CcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999998999999999998876554   478999999999875

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.3e-36  Score=324.17  Aligned_cols=253  Identities=12%  Similarity=-0.000  Sum_probs=203.2

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ..+..+.++|||||||.||.++++|.+.........+.++++..+...+. |++|.++...                   
T Consensus       142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~  221 (512)
T 3fce_A          142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMI  221 (512)
T ss_dssp             CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHH
T ss_pred             CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHh
Confidence            34555778999999999999999999988887777776766633322222 6666544320                   


Q ss_pred             -------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         285 -------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       285 -------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                 ..+++|+++++++.+++.+.|+.   ..+++.||+||
T Consensus       222 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~---~~i~~~YG~TE  298 (512)
T 3fce_A          222 ARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPK---ATIMNTYGPTE  298 (512)
T ss_dssp             HSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTT---CEEEEEECCGG
T ss_pred             hCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCC---CEEEeCcccCh
Confidence                                                       01189999999999999998853   45679999999


Q ss_pred             CCCCCc---------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCC
Q psy5016         322 KMFKDV---------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDS  389 (485)
Q Consensus       322 t~~~~~---------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~  389 (485)
                      ++....         ......++|+|+++++++| |+ +..+++|+.|||+|+|+   +++.||| +++.+++.|...+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~  375 (512)
T 3fce_A          299 ATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGP---SVSVGYLGSPELTEKAFTMIDG  375 (512)
T ss_dssp             GSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEEST---TSCSCBTTCHHHHHHHEEEETT
T ss_pred             hhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEecc---ccChhhcCCchhhhhccccCCC
Confidence            753211         1235678999999999999 55 67799999999999999   9999999 88999888854455


Q ss_pred             CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCC
Q psy5016         390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL  469 (485)
Q Consensus       390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~  469 (485)
                      ++ ||+|||+|++ +||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|+++++...
T Consensus       376 ~~-~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~  453 (512)
T 3fce_A          376 ER-AYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE  453 (512)
T ss_dssp             EE-EEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS
T ss_pred             CE-EEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc
Confidence            66 9999999999 799999999999999999999999999999999999999999999998889999999999876544


Q ss_pred             CH----HHHHHHHHhhCCCC
Q psy5016         470 NA----DDIRTFCKGKVSKF  485 (485)
Q Consensus       470 ~~----~~l~~~l~~~l~~y  485 (485)
                      +.    ++|+++|+++|++|
T Consensus       454 ~~~~~~~~l~~~l~~~L~~~  473 (512)
T 3fce_A          454 KEFKLTSAIKKELNERLPNY  473 (512)
T ss_dssp             SHHHHHHHHHHHHHTTSCGG
T ss_pred             chhhhHHHHHHHHHhhCchh
Confidence            33    57899999999876

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=3.6e-36  Score=320.64  Aligned_cols=252  Identities=10%  Similarity=-0.027  Sum_probs=203.6

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ....+.++|||||||.||.++++|.+...........+.++..+...+. |++|.++..                     
T Consensus       142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  221 (511)
T 3e7w_A          142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVN  221 (511)
T ss_dssp             TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred             CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhc
Confidence            3455678999999999999999999988877777666666533222222 555544432                     


Q ss_pred             -----------------------h------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         284 -----------------------L------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       284 -----------------------~------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                             +                  ..+++|+++++++.+++.+.|+.   ..+++.||+||+
T Consensus       222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~---~~i~~~YG~TE~  298 (511)
T 3e7w_A          222 KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPK---AKIFNTYGPTEA  298 (511)
T ss_dssp             SHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTT---CEEEECCCCGGG
T ss_pred             CHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCC---cEEEeCcccchh
Confidence                                   0                  01179999999999999999853   456799999997


Q ss_pred             CCCCc---------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCC
Q psy5016         323 MFKDV---------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSA  390 (485)
Q Consensus       323 ~~~~~---------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~  390 (485)
                      +....         ......++|+|+|+++++| |+ +..+++|++|||+|+|+   +++.||| +++.+++.|.. +.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~-~~g  374 (511)
T 3e7w_A          299 TVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP---SVSRGYLGEPELTEKAFFS-HEG  374 (511)
T ss_dssp             SSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHHEEE-SSS
T ss_pred             eeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecC---ccChhhCCCcccchhhhcC-CCC
Confidence            53211         1234567999999999999 65 67799999999999999   9999999 88988887732 234


Q ss_pred             CCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC
Q psy5016         391 GRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN  470 (485)
Q Consensus       391 g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~  470 (485)
                      ++||+|||+|++ +||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|+++++...+
T Consensus       375 ~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~  453 (511)
T 3e7w_A          375 QWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEK  453 (511)
T ss_dssp             SEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSS
T ss_pred             CEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccc
Confidence            437999999999 5999999999999999999999999999999999999999999999988899999999998765444


Q ss_pred             H----HHHHHHHHhhCCCC
Q psy5016         471 A----DDIRTFCKGKVSKF  485 (485)
Q Consensus       471 ~----~~l~~~l~~~l~~y  485 (485)
                      .    ++|+++|+++|++|
T Consensus       454 ~~~~~~~l~~~l~~~L~~~  472 (511)
T 3e7w_A          454 EFQLTSAIKKELAASLPAY  472 (511)
T ss_dssp             HHHHHHHHHHHHHHHSCGG
T ss_pred             hhhHHHHHHHHHHhhCchh
Confidence            3    67899999999875

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=3.2e-36  Score=325.09  Aligned_cols=248  Identities=10%  Similarity=0.011  Sum_probs=194.4

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      ..+-+.++|||||||.||.++++|.+...........++++..+...+. |++|..+..                     
T Consensus       181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~  260 (563)
T 1amu_A          181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTIN  260 (563)
T ss_dssp             TTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHT
T ss_pred             CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhc
Confidence            3455678999999999999999999887776666666666532222222 555543322                     


Q ss_pred             -----------------------h------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC--
Q psy5016         284 -----------------------L------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD--  326 (485)
Q Consensus       284 -----------------------~------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~--  326 (485)
                                             +            ..++||+++++++.+.+.+.      ..+++.||+||++...  
T Consensus       261 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~lr~~~~gG~~l~~~~~~~~~~~------~~~~~~YG~TE~~~~~~~  334 (563)
T 1amu_A          261 DFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEK------VTYINAYGPTETTICATT  334 (563)
T ss_dssp             CHHHHHHHHHHTTCCEEEECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTTT------SEEEEEECCGGGSSCSEE
T ss_pred             CHHHHHHHHHHcCCcEEEeCHHHHHHHHhcccccccEEEEEEecCCHHHHHHHHhC------CeEEEEECcCHHhHhhee
Confidence                                   0            00178999999999988764      2347999999975311  


Q ss_pred             -----ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc---cCCCCCeEe
Q psy5016         327 -----VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV---PDSAGRSIF  395 (485)
Q Consensus       327 -----~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~---~~~~g~~~~  395 (485)
                           .......++|+|+|+++++| |+ +..+++|++|||+|+|+   +++.||| +++.|++.|..   .+.++ ||+
T Consensus       335 ~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~pe~t~~~f~~~~~~~g~~-w~~  410 (563)
T 1amu_A          335 WVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGE---GLARGYWKRPELTSQKFVDNPFVPGEK-LYK  410 (563)
T ss_dssp             EECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECSSSTTSE-EEE
T ss_pred             eecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEech---hhChhhCCCchhhhhhcccCCCCCCCE-EEe
Confidence                 11235678999999999999 65 66799999999999999   9999999 88888887731   11234 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR  475 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  475 (485)
                      |||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|+..+  ..+.++|+
T Consensus       411 TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~  488 (563)
T 1amu_A          411 TGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLR  488 (563)
T ss_dssp             EEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHH
T ss_pred             cCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888999999999764  46789999


Q ss_pred             HHHHhhCCCC
Q psy5016         476 TFCKGKVSKF  485 (485)
Q Consensus       476 ~~l~~~l~~y  485 (485)
                      ++|+++|++|
T Consensus       489 ~~l~~~L~~y  498 (563)
T 1amu_A          489 QFSSEELPTY  498 (563)
T ss_dssp             HHHHHHSCGG
T ss_pred             HHHHhhCchh
Confidence            9999999876

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2.2e-37  Score=332.72  Aligned_cols=248  Identities=18%  Similarity=0.178  Sum_probs=143.4

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      .+.-+.++|||||||.||.++++|.+.........+.++++..+...+. |++|.++...                    
T Consensus       190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~  269 (544)
T 3o83_A          190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPE  269 (544)
T ss_dssp             TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCC
T ss_pred             ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCC
Confidence            3455678999999999999999999988888887777777644333333 7777665430                    


Q ss_pred             -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                               ..++||+++++++.+++.+.++    ..+++.||+||++
T Consensus       270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~  345 (544)
T 3o83_A          270 PLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN----CKLQQVFGMAEGL  345 (544)
T ss_dssp             HHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC----SEEEEEEECTTSC
T ss_pred             HHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC----CcEEeeecccccc
Confidence                                                     0018999999999999999886    4567999999975


Q ss_pred             CC-----CccCccccCccccc-CCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeE
Q psy5016         324 FK-----DVKNYLITPALKGL-YHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSI  394 (485)
Q Consensus       324 ~~-----~~~~~~~~s~G~p~-pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~  394 (485)
                      ..     ........++|+|+ ++++++| |+ +..+++|++|||+|+|+   +++.||| +++.+++.|   +.+| ||
T Consensus       346 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f---~~~g-~~  418 (544)
T 3o83_A          346 VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGP---YTFCGYYQSPEHNSQVF---DEDN-YY  418 (544)
T ss_dssp             EEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECT---TSCSCCTTCHHHHHHHB---CTTC-CE
T ss_pred             ceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecC---CcchhhcCChhhhhhhC---CCCC-Ce
Confidence            31     12223457899997 8999999 65 67799999999999999   9999999 899998888   5678 99


Q ss_pred             ecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHH
Q psy5016         395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDI  474 (485)
Q Consensus       395 ~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l  474 (485)
                      +|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.++|+|+.++ ...+.+++
T Consensus       419 ~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l  497 (544)
T 3o83_A          419 YSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVL  497 (544)
T ss_dssp             EEEEEEEECTTSCEEEEEEEC-----------------------------------------------------------
T ss_pred             EcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999876 44567789


Q ss_pred             HHHHHh-hCCCC
Q psy5016         475 RTFCKG-KVSKF  485 (485)
Q Consensus       475 ~~~l~~-~l~~y  485 (485)
                      +++|++ +|++|
T Consensus       498 ~~~~~~~~l~~~  509 (544)
T 3o83_A          498 RRHLMELGIAQY  509 (544)
T ss_dssp             ------------
T ss_pred             HHHHHhCCCCcc
Confidence            999988 68775

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=7.8e-37  Score=328.23  Aligned_cols=246  Identities=15%  Similarity=0.105  Sum_probs=173.3

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHh--hhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAH--YNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~--~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ...+.++|||||||.||.++++|.+.......  ....+.++..+...+. |++|.++...                   
T Consensus       176 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~  255 (541)
T 1v25_A          176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD  255 (541)
T ss_dssp             TSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCS
T ss_pred             CCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCC
Confidence            45566899999999999999999987665544  2234444422222222 7777655420                   


Q ss_pred             -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                               ..++||+++++++.+++ +.++    ..+++.||+||++
T Consensus       256 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g----~~~~~~YG~TE~~  330 (541)
T 1v25_A          256 PASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG----VEVRQGYGLTETS  330 (541)
T ss_dssp             HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT----CEEEEEEECGGGS
T ss_pred             HHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC----Cceeecccccccc
Confidence                                                     01189999999999999 5565    4567999999975


Q ss_pred             CCC----cc-----------CccccCcccccCCcEEEE-cC-CCCCCC--CCceEEEEecCCCCccccccc-Cccccccc
Q psy5016         324 FKD----VK-----------NYLITPALKGLYHFKKWM-NP-KFSTTT--RKVALTWPNSMDSEARIYHYK-KYLREEEN  383 (485)
Q Consensus       324 ~~~----~~-----------~~~~~s~G~p~pg~~v~I-d~-~~~~~~--g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~  383 (485)
                      ...    ..           ....+++|+|+|+++++| |+ +..++.  +++|||+|+|+   +++.||| +++.|++.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~---~v~~GY~~~p~~t~~~  407 (541)
T 1v25_A          331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGP---WITGGYYGNEEATRSA  407 (541)
T ss_dssp             SEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEEST---TSBSSCBTCHHHHHTT
T ss_pred             cceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCc---chhccccCChhhhhhh
Confidence            311    00           023578999999999999 65 556764  36899999999   9999999 89999988


Q ss_pred             ccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEE
Q psy5016         384 ITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  463 (485)
Q Consensus       384 ~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~  463 (485)
                      |   ..+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|++
T Consensus       408 f---~~~g-~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~  483 (541)
T 1v25_A          408 L---TPDG-FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP  483 (541)
T ss_dssp             B---CTTS-CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--
T ss_pred             c---cCCC-CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEE
Confidence            8   4578 99999999999999999999999999999999999999999999999999999999999899999999998


Q ss_pred             cCCCCCCHHHHHHHHHh-hCCCC
Q psy5016         464 KENAKLNADDIRTFCKG-KVSKF  485 (485)
Q Consensus       464 ~~~~~~~~~~l~~~l~~-~l~~y  485 (485)
                      + +...+.++++++|++ +|++|
T Consensus       484 ~-~~~~~~~~l~~~~~~~~L~~~  505 (541)
T 1v25_A          484 R-GEKPTPEELNEHLLKAGFAKW  505 (541)
T ss_dssp             ------------------CCCTT
T ss_pred             C-CCCCCHHHHHHHHHhccCccc
Confidence            6 445667899999999 88876

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=7.1e-36  Score=322.89  Aligned_cols=247  Identities=14%  Similarity=0.037  Sum_probs=196.5

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhh--HHHhhhcccCCCcccccchh-hccchhhhH------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAE--VEAHYNQKSDIDWEYADKCE-KSMQGWAKT------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~--~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~------------------  283 (485)
                      ....-+.++|||||||.||.++++|. ...  ..... ..++++..+...+. |++|.++..                  
T Consensus       204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  281 (570)
T 3c5e_A          204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLL  281 (570)
T ss_dssp             BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECC
T ss_pred             CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecC
Confidence            34455678999999999999999999 443  22222 34444422211111 444443321                  


Q ss_pred             --------------------------h-----------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         284 --------------------------L-----------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       284 --------------------------~-----------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                                +                 ..+++|+++++++.+.+.+.++    ..+++.||+|
T Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g----~~i~~~YG~T  357 (570)
T 3c5e_A          282 PKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG----LDIRESYGQT  357 (570)
T ss_dssp             SSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHS----CCCEEEEEET
T ss_pred             CCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhC----Cchhhccchh
Confidence                                      0                 0117899999999999998886    4567999999


Q ss_pred             CCCC----CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEe-----cCCCCccccccc-CcccccccccccC
Q psy5016         321 EKMF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPN-----SMDSEARIYHYK-KYLREEENITVPD  388 (485)
Q Consensus       321 Et~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~-----g~~~~~~~~gY~-~~~~~~~~~~~~~  388 (485)
                      |++.    ........+++|+|+++++++| |+ +..+++|++|||+|+     |+   +++.||| +++.+++.|    
T Consensus       358 E~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~---~v~~GY~~~~~~t~~~f----  430 (570)
T 3c5e_A          358 ETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPI---GIFSGYVDNPDKTAANI----  430 (570)
T ss_dssp             TTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCT---TCCCEETTCHHHHHHTE----
T ss_pred             hcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCc---hhhccccCChhHhhhhh----
Confidence            9742    1222356789999999999999 65 677999999999999     88   9999999 889898888    


Q ss_pred             CCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCC-
Q psy5016         389 SAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-  467 (485)
Q Consensus       389 ~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~-  467 (485)
                      .++ ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|+++++. 
T Consensus       431 ~~~-~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~  509 (570)
T 3c5e_A          431 RGD-FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL  509 (570)
T ss_dssp             ETT-EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT
T ss_pred             cCC-ccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc
Confidence            467 999999999999999999999999999999999999999999999999999999999998899999999987653 


Q ss_pred             -CC---CHHHHHHHHHhhCCCC
Q psy5016         468 -KL---NADDIRTFCKGKVSKF  485 (485)
Q Consensus       468 -~~---~~~~l~~~l~~~l~~y  485 (485)
                       ..   ..++|+++|+++|++|
T Consensus       510 ~~~~~~~~~~l~~~l~~~L~~~  531 (570)
T 3c5e_A          510 SHDPEQLTKELQQHVKSVTAPY  531 (570)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCGG
T ss_pred             CcchHHHHHHHHHHHHhhCccc
Confidence             11   2468999999999875

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2.7e-36  Score=322.19  Aligned_cols=254  Identities=13%  Similarity=0.039  Sum_probs=188.1

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcc--cCCCcccccchh-hccchhhhH------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQK--SDIDWEYADKCE-KSMQGWAKT------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~--~~~~~~~~~~~~-pl~~~~~~~------------------  283 (485)
                      ..+.-+.++|||||||.||.++++|.+...........  +.+...+...+. |++|..+..                  
T Consensus       143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  222 (521)
T 3l8c_A          143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKE  222 (521)
T ss_dssp             CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGG
T ss_pred             CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHH
Confidence            34555778999999999999999999887665544433  233211111111 333322211                  


Q ss_pred             --------------------------h------------------hhhccCCCCCHHHHHHHHhhhhhcccCcccccccc
Q psy5016         284 --------------------------L------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEF  319 (485)
Q Consensus       284 --------------------------~------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~  319 (485)
                                                +                  ..+++|+++++++.+.+.+.|+.   ..+++.||+
T Consensus       223 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~---~~i~~~YG~  299 (521)
T 3l8c_A          223 LVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPS---AKIINAYGP  299 (521)
T ss_dssp             GTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTT---CEEEEEECC
T ss_pred             HhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCC---ceEEeCcCc
Confidence                                      0                  01178999999999999998853   456799999


Q ss_pred             CCCCCCCc---------cCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc
Q psy5016         320 QEKMFKDV---------KNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP  387 (485)
Q Consensus       320 TEt~~~~~---------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~  387 (485)
                      ||++....         ......++|+|+|+++++| |+ +..+++|++|||+|+|+   +++.||| +++.+++.|...
T Consensus       300 TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~  376 (521)
T 3l8c_A          300 TEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGP---AVSKGYLNNPEKTAEAFFTF  376 (521)
T ss_dssp             GGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEEST---TSCSCBTTCHHHHHHHEEEE
T ss_pred             cHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEeccc---ccChhhcCCchHhhccCcCC
Confidence            99754211         1234568999999999999 65 67799999999999999   9999999 899998887444


Q ss_pred             CCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCC-CCcEEEEEEEEcCC
Q psy5016         388 DSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGISIKLKEN  466 (485)
Q Consensus       388 ~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~-~g~~~~a~vv~~~~  466 (485)
                      +.+| ||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.++.. .++.++|+|+++++
T Consensus       377 ~~~~-~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~  455 (521)
T 3l8c_A          377 KGQP-AYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDG  455 (521)
T ss_dssp             TTEE-EEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTT
T ss_pred             CCce-eeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCc
Confidence            5567 999999999999999999999999999999999999999999999999999999998654 46889999999876


Q ss_pred             CCCC-------HHHHHHHHHhhCCCC
Q psy5016         467 AKLN-------ADDIRTFCKGKVSKF  485 (485)
Q Consensus       467 ~~~~-------~~~l~~~l~~~l~~y  485 (485)
                      ...+       .++|+++|+++|++|
T Consensus       456 ~~~~~~~~~~~~~~l~~~l~~~l~~~  481 (521)
T 3l8c_A          456 VKERFDRELELTKAIKASVKDHMMSY  481 (521)
T ss_dssp             SGGGCSSHHHHHHHHHHHSGGGSCGG
T ss_pred             cccccccchhhHHHHHHHHHhhCccc
Confidence            4321       468999999999875

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=8.9e-37  Score=329.79  Aligned_cols=253  Identities=12%  Similarity=0.001  Sum_probs=132.3

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ....-+.++|||||||.||.++++|.+....... .....++..+..... |++|..+..                    
T Consensus       212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~  290 (570)
T 4gr5_A          212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP  290 (570)
T ss_dssp             CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC
T ss_pred             CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC
Confidence            3455567899999999999999999887544433 333344422221111 554432211                    


Q ss_pred             -----------------------h---------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         284 -----------------------L---------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       284 -----------------------~---------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                             +               ..++||+++++++.+++.+.++.   ..+++.||+||++..
T Consensus       291 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~---~~l~~~YG~TE~~~~  367 (570)
T 4gr5_A          291 DPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPA---LRLGNGYGPAESMGF  367 (570)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTT---CEEEEEECCGGGCSC
T ss_pred             CHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccCCHHHHHHHHHhCCC---cEEEEeechhhheee
Confidence                                   0               01189999999999999888753   456799999997431


Q ss_pred             C--------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc-----CC
Q psy5016         326 D--------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP-----DS  389 (485)
Q Consensus       326 ~--------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~-----~~  389 (485)
                      .        .......++|+|+++++++| |+ +..+++|++|||+|+|+   +++.||| +++.+++.|...     +.
T Consensus       368 ~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~~~~~~  444 (570)
T 4gr5_A          368 TTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGA---GLAHGYVSRPALTAERFVADPFAGPGG  444 (570)
T ss_dssp             SEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECTTCCSSC
T ss_pred             eeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeec---ccchhcCCCchhhhcccccCCCCCCCC
Confidence            1        11234567999999999999 55 67799999999999999   9999999 888888877311     12


Q ss_pred             CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC-CC
Q psy5016         390 AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-AK  468 (485)
Q Consensus       390 ~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~-~~  468 (485)
                      ++ ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|+++++ ..
T Consensus       445 ~~-w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~  523 (570)
T 4gr5_A          445 ER-MYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP  523 (570)
T ss_dssp             CE-EEEEEEEEEECTTSCEEEEEC--------------------------------------------------------
T ss_pred             CE-EEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC
Confidence            35 99999999999999999999999999999999999999999999999999999999998889999999998654 34


Q ss_pred             CCHHHHHHHHHhhCCCC
Q psy5016         469 LNADDIRTFCKGKVSKF  485 (485)
Q Consensus       469 ~~~~~l~~~l~~~l~~y  485 (485)
                      .+.++|+++|+++|+.|
T Consensus       524 ~~~~~l~~~l~~~l~~~  540 (570)
T 4gr5_A          524 PDAAELRRHVAEALPAY  540 (570)
T ss_dssp             -----------------
T ss_pred             cCHHHHHHHHHhhCccc
Confidence            67789999999999876

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.8e-35  Score=316.48  Aligned_cols=247  Identities=14%  Similarity=0.067  Sum_probs=189.7

Q ss_pred             ccCCcceeeccccccCCcEEEecccch-hhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFS-AEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~-~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      .++-+.++|||||||.||.++++|.+. ...........+++..+..... |++|.++...                   
T Consensus       182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~  261 (529)
T 2v7b_A          182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERP  261 (529)
T ss_dssp             TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCC
T ss_pred             CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCC
Confidence            345567899999999999999999887 4444444344445422222222 6666554320                   


Q ss_pred             ------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCC
Q psy5016         285 ------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK  322 (485)
Q Consensus       285 ------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt  322 (485)
                                                                ..++||+++++++.+.+.+.++    ..+++.||+||+
T Consensus       262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g----~~i~~~YG~TE~  337 (529)
T 2v7b_A          262 TADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG----CEILDGIGSTEM  337 (529)
T ss_dssp             CHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS----CCEEEEEECTTT
T ss_pred             CHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC----CceeeeEchhhc
Confidence                                                      0016899999999999999886    456799999997


Q ss_pred             CC----CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEe
Q psy5016         323 MF----KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIF  395 (485)
Q Consensus       323 ~~----~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~  395 (485)
                      +.    ........+++|+|+++++++| |+ +..+++|++|||+|+|+   +++.||| +++.+++.|    .++ ||+
T Consensus       338 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f----~~~-~~~  409 (529)
T 2v7b_A          338 LHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGP---SAAVMYWNNREKSRATF----LGE-WIR  409 (529)
T ss_dssp             SSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECT---TCCCCBTTCHHHHHHHE----ETT-EEE
T ss_pred             CceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecC---CcccccCCChHHHHHhh----hcC-Ccc
Confidence            42    1122356789999999999999 65 67799999999999999   9999999 888888888    467 999


Q ss_pred             cCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC---HH
Q psy5016         396 EKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---AD  472 (485)
Q Consensus       396 TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~  472 (485)
                      |||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++. ++..++.++|+|++.++...+   .+
T Consensus       410 TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~  488 (529)
T 2v7b_A          410 SGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAE  488 (529)
T ss_dssp             EEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHH
T ss_pred             cCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHH
Confidence            99999999999999999999999999999999999999999999999999999 666788999999988764322   36


Q ss_pred             HHHHHHHhhCCCC
Q psy5016         473 DIRTFCKGKVSKF  485 (485)
Q Consensus       473 ~l~~~l~~~l~~y  485 (485)
                      +|+++|+++|++|
T Consensus       489 ~l~~~l~~~L~~~  501 (529)
T 2v7b_A          489 ELKAFVKDRLAPH  501 (529)
T ss_dssp             HHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcchh
Confidence            8999999999886

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.5e-35  Score=314.90  Aligned_cols=241  Identities=13%  Similarity=0.112  Sum_probs=200.4

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS------------------  285 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~------------------  285 (485)
                      ..++-+.++|||||||.||.++++|.+...........++++..+...+. |++|.++....                  
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~  240 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNA  240 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCH
Confidence            44556778999999999999999999988888777777777633333322 77887665410                  


Q ss_pred             --------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCCC-
Q psy5016         286 --------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFKD-  326 (485)
Q Consensus       286 --------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~~-  326 (485)
                                                            .++||+++++++.+++.+ ++    ..+++.||+||++... 
T Consensus       241 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~-~~----~~~~~~YG~TE~~~~~~  315 (501)
T 3ipl_A          241 EQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQ-YN----LPIYNSFGMTETCSQFL  315 (501)
T ss_dssp             HHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCCCHHHHHHHHH-TT----CCEEEEEEEGGGTEEEE
T ss_pred             HHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCCCHHHHHHHHH-hC----CCEecccccccccccee
Confidence                                                  117999999999998876 33    4467999999975311 


Q ss_pred             -----ccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCce
Q psy5016         327 -----VKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQ  399 (485)
Q Consensus       327 -----~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~  399 (485)
                           .....++++|+|+++++++| |++    +|++|||+|+|+   ++++||| +++.+.. |    .+| ||+|||+
T Consensus       316 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~GEl~v~g~---~~~~gY~~~~~~t~~-~----~~g-~~~TGDl  382 (501)
T 3ipl_A          316 TATPEMLHARPDTVGMPSANVDVKIKNPN----KEGHGELMIKGA---NVMNGYLYPTDLTGT-F----ENG-YFNTGDI  382 (501)
T ss_dssp             EECHHHHHHCTTCCBEECTTCEEEEESCC----SSCCEEEEEEST---TSCSCCSBSTTCCCS-E----ETT-EEEEEEE
T ss_pred             ecCccccccCCCCCCCCCCCcEEEEecCC----CCCccEEEEecc---chhhhhCcChhhcch-h----cCC-ceecCCE
Confidence                 11245779999999999999 764    567899999999   9999999 7777766 5    577 9999999


Q ss_pred             EEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHH
Q psy5016         400 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK  479 (485)
Q Consensus       400 ~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~  479 (485)
                      |++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++++..  ...+.++|+++|+
T Consensus       383 ~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l~  460 (501)
T 3ipl_A          383 AEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLS  460 (501)
T ss_dssp             EEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHHHHH
T ss_pred             EEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999874  3568899999999


Q ss_pred             hhCCCC
Q psy5016         480 GKVSKF  485 (485)
Q Consensus       480 ~~l~~y  485 (485)
                      ++|++|
T Consensus       461 ~~L~~~  466 (501)
T 3ipl_A          461 KHLAKY  466 (501)
T ss_dssp             HHSCGG
T ss_pred             hhCccc
Confidence            999876

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.7e-35  Score=320.07  Aligned_cols=247  Identities=19%  Similarity=0.198  Sum_probs=204.5

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      .++-+.++|||||||.||.++++|.+.........+.+.++..+...+. |++|.++...                    
T Consensus       183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~  262 (617)
T 3rg2_A          183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPS  262 (617)
T ss_dssp             TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCC
T ss_pred             CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCC
Confidence            3455678999999999999999999888877776666666533322222 5666554320                    


Q ss_pred             -------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         285 -------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       285 -------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                 ..++||+++++++.+++.+.++    ..+++.||+||
T Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~----~~~~~~YG~tE  338 (617)
T 3rg2_A          263 ATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG----CQLQQVFGMAE  338 (617)
T ss_dssp             HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTC----SEEEEEEEETT
T ss_pred             HHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhC----CcEEEEeccCc
Confidence                                                       0117899999999999998876    45679999999


Q ss_pred             CCC-----CCccCccccCccccc-CCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCC
Q psy5016         322 KMF-----KDVKNYLITPALKGL-YHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGR  392 (485)
Q Consensus       322 t~~-----~~~~~~~~~s~G~p~-pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~  392 (485)
                      ++.     .........++|+|+ ++++++| |+ +..+++|++|||+|+|+   ++++||| +++.|++.|   ..++ 
T Consensus       339 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~t~~~f---~~~~-  411 (617)
T 3rg2_A          339 GLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGP---YTFRGYYKSPQHNASAF---DANG-  411 (617)
T ss_dssp             EEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECS---SSCSCCTTCHHHHHHHB---CTTS-
T ss_pred             ceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCc---cccchhcCChhhhhhcc---CCCC-
Confidence            642     112223356899998 7889999 65 67799999999999999   9999999 899999988   5677 


Q ss_pred             eEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHH
Q psy5016         393 SIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD  472 (485)
Q Consensus       393 ~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~  472 (485)
                      ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++++..+  ..+.+
T Consensus       412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~  489 (617)
T 3rg2_A          412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAV  489 (617)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHH
T ss_pred             ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999988999999999876  46789


Q ss_pred             HHHHHHHh-hCCCC
Q psy5016         473 DIRTFCKG-KVSKF  485 (485)
Q Consensus       473 ~l~~~l~~-~l~~y  485 (485)
                      ++++++++ +|+.|
T Consensus       490 ~l~~~l~~~~lp~~  503 (617)
T 3rg2_A          490 QVRRFLREQGIAEF  503 (617)
T ss_dssp             HHHHHHHTTTCCGG
T ss_pred             HHHHHHHhCCCccc
Confidence            99999998 68865

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.8e-35  Score=323.63  Aligned_cols=194  Identities=16%  Similarity=0.110  Sum_probs=163.0

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-------CccCccccCcccccCCcEEEE-cC--CCCCCC-CC
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-------DVKNYLITPALKGLYHFKKWM-NP--KFSTTT-RK  356 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~-g~  356 (485)
                      ++|+++++++++++.+.++... ..+++.||+||++..       .....+++++|+|++|++++| |+  +..+++ |+
T Consensus       391 ~gGe~l~~~~~~~~~~~~g~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~  469 (663)
T 1ry2_A          391 SVGEPIAAEVWEWYSEKIGKNE-IPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA  469 (663)
T ss_dssp             ECSSCCCHHHHHHHHHTTSCSS-SCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC
T ss_pred             EEcCCCCHHHHHHHHHHhCCCC-ceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc
Confidence            7999999999999999886321 345799999997531       123456789999999999999 65  566777 89


Q ss_pred             ceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016         357 VALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ  435 (485)
Q Consensus       357 ~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~  435 (485)
                      .|||+++|++| ++++||| +++.+.+.|. ...+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.
T Consensus       470 ~Gel~i~g~~p-~~~~gy~~~~~~~~~~~~-~~~~g-~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~  546 (663)
T 1ry2_A          470 EGVLAVKAAWP-SFARTIWKNHDRYLDTYL-NPYPG-YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII  546 (663)
T ss_dssp             EEEEEESSCCT-TSCCEETTCHHHHHHHHT-SSSTT-SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH
T ss_pred             ceEEEEecCCC-chhcccccChHHHHHhhh-cCCCC-EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH
Confidence            99999999777 9999999 8887776651 12367 9999999999999999999999999999999999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC---C-C------HHHHHHHHHhhCCCC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAK---L-N------ADDIRTFCKGKVSKF  485 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~---~-~------~~~l~~~l~~~l~~y  485 (485)
                      +||+|.+|+|++.+++..|+.++|||+++++..   . +      .++|+++|+++|++|
T Consensus       547 ~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~  606 (663)
T 1ry2_A          547 EDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF  606 (663)
T ss_dssp             SSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTT
T ss_pred             hCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999988999999999987643   2 2      478999999999876

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.7e-36  Score=323.01  Aligned_cols=248  Identities=16%  Similarity=0.126  Sum_probs=134.7

Q ss_pred             ccccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhhh---h------------
Q psy5016         224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLSS---E------------  287 (485)
Q Consensus       224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~~---l------------  287 (485)
                      ....+.+.++|||||||.||.++++|.+...........++++..+...+. |++|.++.....   +            
T Consensus       157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~  236 (509)
T 3ivr_A          157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFD  236 (509)
T ss_dssp             CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCC
T ss_pred             CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccC
Confidence            344556778999999999999999999998888887777777744433333 888877654110   0            


Q ss_pred             ------------------------------------------ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC
Q psy5016         288 ------------------------------------------YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK  325 (485)
Q Consensus       288 ------------------------------------------~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~  325 (485)
                                                                .+|++   ++.+.+.+.++.   ..+++.||+||++..
T Consensus       237 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~---~~~~~~YG~TE~~~~  310 (509)
T 3ivr_A          237 PAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPN---ATFWATFGQSETSGL  310 (509)
T ss_dssp             HHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCH---HHHHHHHHHCTT---CEEEEEEEEGGGTEE
T ss_pred             HHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCCh---HHHHHHHHhcCC---CeEEcccCccccccc
Confidence                                                      22322   556666666632   456799999997531


Q ss_pred             ---CccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecCce
Q psy5016         326 ---DVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQ  399 (485)
Q Consensus       326 ---~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~  399 (485)
                         ........++|+|+++++++| |+ +..+++|++|||+|+|+   +++.||| +++.+++.|    .+| ||+|||+
T Consensus       311 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f----~~g-~~~TGDl  382 (509)
T 3ivr_A          311 STFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGP---TVFKGYWNNAAATQHAF----RNG-WHHTGDM  382 (509)
T ss_dssp             EEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEEST---TSCCEETTCHHHHHHHT----GGG-SEEEEEE
T ss_pred             cccCccccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecC---CccccccCCHHHhHHHh----hcC-CcccccE
Confidence               112233456999999999999 65 67799999999999999   9999999 899999888    477 9999999


Q ss_pred             EEEecCCeEEEEecC--CCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHH
Q psy5016         400 FVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF  477 (485)
Q Consensus       400 ~~~d~~G~l~i~GR~--~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~  477 (485)
                      |++|+||+++|+||+  +|+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++++|++.++...+.++|+++
T Consensus       383 ~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  462 (509)
T 3ivr_A          383 GRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEF  462 (509)
T ss_dssp             EEECTTSCEEEEEEC-----------------------------------------------------------------
T ss_pred             EEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHH
Confidence            999999999999999  999999999999999999999999999999999999988999999999988777788899999


Q ss_pred             HHhhCCCC
Q psy5016         478 CKGKVSKF  485 (485)
Q Consensus       478 l~~~l~~y  485 (485)
                      |+++|++|
T Consensus       463 l~~~L~~~  470 (509)
T 3ivr_A          463 VASLIARY  470 (509)
T ss_dssp             --------
T ss_pred             HHhhCccc
Confidence            99999876

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=6e-36  Score=342.56  Aligned_cols=251  Identities=15%  Similarity=0.132  Sum_probs=144.0

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhc----ccCCCcccccchh-hccchhhhHhh--------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ----KSDIDWEYADKCE-KSMQGWAKTLS--------------  285 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~----~~~~~~~~~~~~~-pl~~~~~~~~~--------------  285 (485)
                      ..++-+.++|||||||.||.++++|.+..........    .+.++..+...+. |++|.++....              
T Consensus       223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~  302 (979)
T 3tsy_A          223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM  302 (979)
T ss_dssp             CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC
T ss_pred             CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe
Confidence            3455567899999999999999999988776655443    2334422222222 78887665300              


Q ss_pred             ----------------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCcccccccc
Q psy5016         286 ----------------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEF  319 (485)
Q Consensus       286 ----------------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~  319 (485)
                                                                    .++||+++++++.+++.+.|+.   ..+++.||+
T Consensus       303 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~---~~l~~~YG~  379 (979)
T 3tsy_A          303 PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPN---AKLGQGYGM  379 (979)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTT---CEEEECEEC
T ss_pred             CCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCC---CeEEeeech
Confidence                                                          0179999999999999998853   456799999


Q ss_pred             CCCCCC---------CccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016         320 QEKMFK---------DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV  386 (485)
Q Consensus       320 TEt~~~---------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~  386 (485)
                      ||++..         .......+++|+|+++++++| |+  +..+++|++|||+|+|+   ++++||| +++.+++.|  
T Consensus       380 TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~---~v~~GY~~~p~~t~~~f--  454 (979)
T 3tsy_A          380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGH---QIMKGYLNNPAATAETI--  454 (979)
T ss_dssp             GGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHB--
T ss_pred             hhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECC---CccccccCChhhhhhhc--
Confidence            997521         223456789999999999999 74  56799999999999999   9999999 899998888  


Q ss_pred             cCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         387 PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       387 ~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                       +.+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+++||+..++
T Consensus       455 -~~~g-~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~  532 (979)
T 3tsy_A          455 -DKDG-WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD  532 (979)
T ss_dssp             -CTTS-CEEEEEEEEECTTSCEEEEEESCC--------------------------------------------------
T ss_pred             -cCCC-cEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence             5678 99999999999999999999999999999999999999999999999999999999999889999999998887


Q ss_pred             CCCCHHHHHHHHHhhCCCC
Q psy5016         467 AKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       467 ~~~~~~~l~~~l~~~l~~y  485 (485)
                      ...+.++|+++|+++|+.|
T Consensus       533 ~~~~~~~l~~~l~~~l~~~  551 (979)
T 3tsy_A          533 SELSEDDVKQFVSKQVVFY  551 (979)
T ss_dssp             -------------------
T ss_pred             CCCCHHHHHHHHHHhcccc
Confidence            7778889999999999876

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.2e-34  Score=312.34  Aligned_cols=188  Identities=10%  Similarity=-0.004  Sum_probs=97.6

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-----CccCccccCcccccCCcEEEE-cC--CCCCCCCCceE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-----DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVAL  359 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-----~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Ge  359 (485)
                      +||+++++++.+.+.+.++    ..+++.||+||++..     .......+++|+|+++++++| |+  +..+++|++||
T Consensus       301 ~gG~~l~~~~~~~~~~~~~----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GE  376 (562)
T 3ite_A          301 VGGEKMTPRTQQIWSSSDR----VALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGE  376 (562)
T ss_dssp             EESSCCCHHHHHHHTTCSS----CEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEE
T ss_pred             EecCCCCHHHHHHHhhCCC----cEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceE
Confidence            8999999999999988765    456799999997531     223345678999999999999 64  45689999999


Q ss_pred             EEEecCCCCccccccc-CcccccccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcC-
Q psy5016         360 TWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-  437 (485)
Q Consensus       360 l~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~-  437 (485)
                      |+|+|+   +++.||| +++.++..+  .+.++ ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+| 
T Consensus       377 l~v~g~---~v~~GY~~~p~~t~~~~--~~g~~-w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~  450 (562)
T 3ite_A          377 LVIEGS---LVANGYLNRPDAKGFCD--INGRK-MYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLS  450 (562)
T ss_dssp             EEEEST---TSCCEESSCTTCCSEEE--ETTEE-EEEEEEEEEECTTSCEEEEEEC------------------------
T ss_pred             EEEecc---ccchhhCCCcccccccc--CCCCE-EEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcC
Confidence            999999   9999999 788777554  23334 999999999999999999999999999999999999999999998 


Q ss_pred             CCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC-------------HHHHHHHHHhhCCCC
Q psy5016         438 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-------------ADDIRTFCKGKVSKF  485 (485)
Q Consensus       438 ~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~-------------~~~l~~~l~~~l~~y  485 (485)
                      |.+.+++|++.+++..++..+++++..++....             .++|+++|+++|++|
T Consensus       451 ~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y  511 (562)
T 3ite_A          451 PTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAY  511 (562)
T ss_dssp             -------------------------------------------------------------
T ss_pred             CCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcc
Confidence            888899999999988887777766655433222             248999999999886

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=6.5e-34  Score=310.45  Aligned_cols=246  Identities=10%  Similarity=-0.040  Sum_probs=181.6

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH---------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT---------------------  283 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~---------------------  283 (485)
                      .++-+.++|||||||.||.++++|.+....... ...+.++..+..... |++|..+..                     
T Consensus       163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~  241 (620)
T 4dg8_A          163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLD  241 (620)
T ss_dssp             TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCC
T ss_pred             CCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCC
Confidence            455677899999999999999999876554433 233333322211111 444443322                     


Q ss_pred             ----------------------h---------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCCC-
Q psy5016         284 ----------------------L---------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMFK-  325 (485)
Q Consensus       284 ----------------------~---------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~~-  325 (485)
                                            +               ..++||+++++++.+.+.+.++.   ..+++.||+||++.. 
T Consensus       242 ~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~  318 (620)
T 4dg8_A          242 PGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPR---LHLVNGYGPTENTTFT  318 (620)
T ss_dssp             HHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTT---CEEEEEECCGGGCSCS
T ss_pred             HHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcCCHHHHHHHHHhCCC---eEEEeeEchhhhhhhe
Confidence                                  0               01289999999998888877642   456799999996531 


Q ss_pred             -------CccCccccCcccccCCcEEEE-cC-CCC-CCCCCceEEEEecCCCCccccccc-CcccccccccccCCCC---
Q psy5016         326 -------DVKNYLITPALKGLYHFKKWM-NP-KFS-TTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAG---  391 (485)
Q Consensus       326 -------~~~~~~~~s~G~p~pg~~v~I-d~-~~~-~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g---  391 (485)
                             ........++|+|+++++++| |+ +.. +++|++|||+|+|+   ++++||| +++.|++.|......|   
T Consensus       319 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~---~v~~GY~~~p~~t~~~f~~~p~~~~~~  395 (620)
T 4dg8_A          319 CCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGA---GLAQGYRNDAARTRASFVELPYRGRLL  395 (620)
T ss_dssp             EEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEET---TCCSEETTCHHHHHHHEEEEEETTEEE
T ss_pred             EEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecc---ccccccCCChhhhhhhhccCCCCCCCc
Confidence                   112345678999999999999 76 344 78999999999999   9999999 8999998883211111   


Q ss_pred             CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016         392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA  471 (485)
Q Consensus       392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~  471 (485)
                      +||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.+ ++++....     
T Consensus       396 ~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv-~~~~~~~~-----  469 (620)
T 4dg8_A          396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL-CAWTGKAD-----  469 (620)
T ss_dssp             EEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE-EEEEECTT-----
T ss_pred             eEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE-EEEecChH-----
Confidence            499999999999999999999999999999999999999999999999999999999887544444 44443321     


Q ss_pred             HHHHHHHHhhCCCC
Q psy5016         472 DDIRTFCKGKVSKF  485 (485)
Q Consensus       472 ~~l~~~l~~~l~~y  485 (485)
                       ++.++++++|++|
T Consensus       470 -~~~~~l~~~Lp~y  482 (620)
T 4dg8_A          470 -ASPQALLRQLPTW  482 (620)
T ss_dssp             -CCCHHHHHHSCGG
T ss_pred             -HHHHHHHHhChhh
Confidence             2345566666654

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.7e-33  Score=328.98  Aligned_cols=252  Identities=14%  Similarity=0.047  Sum_probs=198.3

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhH--------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKT--------------------  283 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~--------------------  283 (485)
                      ...+-+.++|||||||.||+++++|++.... ....+.+.++..+..... ++.|..+..                    
T Consensus       605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~  683 (1304)
T 2vsq_A          605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTL  683 (1304)
T ss_dssp             CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGT
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhc
Confidence            3455577899999999999999999887654 333344444322111111 221111100                    


Q ss_pred             --------------------------------------h-hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC
Q psy5016         284 --------------------------------------L-SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF  324 (485)
Q Consensus       284 --------------------------------------~-~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~  324 (485)
                                                            + ..++||+++++++.+.+.+.++.   ..++|.||+||++.
T Consensus       684 ~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~---~~l~n~YG~TE~~~  760 (1304)
T 2vsq_A          684 LDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGP---GKLINCYGPTEGTV  760 (1304)
T ss_dssp             TCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCCCHHHHHHHHHHHCT---TCEEEEECCGGGSS
T ss_pred             CCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCCCHHHHHHHHHhCCC---CEEEEeEChhHHhH
Confidence                                                  0 01289999999999999888763   45679999999753


Q ss_pred             CC--------ccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Cccccccccccc--CCCC
Q psy5016         325 KD--------VKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVP--DSAG  391 (485)
Q Consensus       325 ~~--------~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~--~~~g  391 (485)
                      ..        .......++|+|+++++++| |+ +..+|.|++|||+|+|+   ++++||+ +++.|++.|...  .+++
T Consensus       761 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~T~~~f~~~p~~~g~  837 (1304)
T 2vsq_A          761 FATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGM---GVSKGYVNRADLTKEKFIENPFKPGE  837 (1304)
T ss_dssp             CSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEET---TCCCCBTTCHHHHHHHEEECTTSTTC
T ss_pred             HheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEecc---ccCccccCCcccchhhhccCCCCCCC
Confidence            11        12234568999999999999 65 67799999999999999   9999999 899998888421  1334


Q ss_pred             CeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016         392 RSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA  471 (485)
Q Consensus       392 ~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~  471 (485)
                      +||+|||+|++++||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|||+.++  ..+.
T Consensus       838 ~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~  915 (1304)
T 2vsq_A          838 TLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSA  915 (1304)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCH
T ss_pred             eeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCH
Confidence            59999999999999999999999999999999999999999999999999999999998888899999999764  4678


Q ss_pred             HHHHHHHHhhCCCC
Q psy5016         472 DDIRTFCKGKVSKF  485 (485)
Q Consensus       472 ~~l~~~l~~~l~~y  485 (485)
                      ++|+++|+++|++|
T Consensus       916 ~~l~~~l~~~Lp~y  929 (1304)
T 2vsq_A          916 EDVKAHLKKQLPAY  929 (1304)
T ss_dssp             HHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHhChHh
Confidence            99999999999976

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=3.6e-34  Score=310.02  Aligned_cols=252  Identities=13%  Similarity=0.076  Sum_probs=197.5

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh-------------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL-------------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~-------------------  284 (485)
                      ....-+.++|||||||.||.++++|.+...........++++..+...+. |++|.++...                   
T Consensus       165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~  244 (590)
T 3kxw_A          165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFS  244 (590)
T ss_dssp             CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHH
T ss_pred             CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHH
Confidence            34555778999999999999999999998888877777776633332222 6666655420                   


Q ss_pred             ------------------------------------------------hhhccCCCCCHHHHHHHHhhhhhccc--Cccc
Q psy5016         285 ------------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQN--RIDD  314 (485)
Q Consensus       285 ------------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~--~~i~  314 (485)
                                                                      ..++||+++++++.+++.+.|+..+.  ..++
T Consensus       245 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~  324 (590)
T 3kxw_A          245 FLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFY  324 (590)
T ss_dssp             HHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEE
T ss_pred             HHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccc
Confidence                                                            00168999999999999999875432  3568


Q ss_pred             cccccCCCCCC-------------------------------CccCccccCcccccCCcEEEE-cC--CCCCCCCCceEE
Q psy5016         315 VEYEFQEKMFK-------------------------------DVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALT  360 (485)
Q Consensus       315 ~~YG~TEt~~~-------------------------------~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel  360 (485)
                      +.||+||++..                               ........++|+|+++  ++| |+  +..+++|++|||
T Consensus       325 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl  402 (590)
T 3kxw_A          325 PCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEI  402 (590)
T ss_dssp             EEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEE
T ss_pred             cccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEE
Confidence            99999996431                               1112345789999999  666 54  567999999999


Q ss_pred             EEecCCCCccccccc-Cccccccccccc--CC--CCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHH-
Q psy5016         361 WPNSMDSEARIYHYK-KYLREEENITVP--DS--AGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI-  434 (485)
Q Consensus       361 ~v~g~~~~~~~~gY~-~~~~~~~~~~~~--~~--~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l-  434 (485)
                      +|+|+   +++.||| +++.|++.|...  +.  +.+||+|||+|++| +|+|+|+||+||+||++|++|+|.|||++| 
T Consensus       403 ~v~g~---~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~  478 (590)
T 3kxw_A          403 WVQSN---SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLM  478 (590)
T ss_dssp             EEEST---TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHH
T ss_pred             EEeCC---cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHH
Confidence            99999   9999999 899998887321  11  22399999999999 999999999999999999999999999999 


Q ss_pred             HcCCCcc--EEEEEEEeCCCCCcEEEEEEEEcCCC--CCCHHHHHHHHHhhCC
Q psy5016         435 QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVS  483 (485)
Q Consensus       435 ~~~~~V~--ea~vv~~~~~~~g~~~~a~vv~~~~~--~~~~~~l~~~l~~~l~  483 (485)
                      ..||.|.  +|+|++++++. ++.+++++++.++.  ..+.++|.++|+++|+
T Consensus       479 ~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~  530 (590)
T 3kxw_A          479 HSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVY  530 (590)
T ss_dssp             HSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHH
Confidence            7899999  89999999875 77888999988753  3455788888887765

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.97  E-value=1e-31  Score=273.97  Aligned_cols=221  Identities=13%  Similarity=0.044  Sum_probs=178.1

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS--------------------  285 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~--------------------  285 (485)
                      +..++++|||||||.||.++++|.+...+.....+.++++..+...+. |++|.++....                    
T Consensus        37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~~  116 (358)
T 4gs5_A           37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANPL  116 (358)
T ss_dssp             TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCTT
T ss_pred             CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccHH
Confidence            456778999999999999999999988888888888888744433333 88888776510                    


Q ss_pred             ------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC----C
Q psy5016         286 ------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF----K  325 (485)
Q Consensus       286 ------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~----~  325 (485)
                                                          .++||+++++++.+++.+. +    ..+++.||+||++.    .
T Consensus       117 ~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~-~----~~~~~~YG~TEt~~~~~~~  191 (358)
T 4gs5_A          117 AGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDL-A----MPVYQSYGMTETVSHVALK  191 (358)
T ss_dssp             TTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTC-S----SCEEEEEECGGGSSEEEEE
T ss_pred             HHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheeccccc-C----ceEEeccccccccceeecc
Confidence                                                1189999999999998763 3    44679999999753    2


Q ss_pred             CccCccccCcccccCCcEEEE-cCCCCCCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec
Q psy5016         326 DVKNYLITPALKGLYHFKKWM-NPKFSTTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE  404 (485)
Q Consensus       326 ~~~~~~~~s~G~p~pg~~v~I-d~~~~~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~  404 (485)
                      .......+++|.+.||+++.+ ++         |||+++|+   .                  ..+| ||+|||+|++|+
T Consensus       192 ~~~~~~~g~~~~~~pgv~~~~~~~---------Gel~~~g~---~------------------~~~g-~~~TGDlg~~d~  240 (358)
T 4gs5_A          192 ALNGPEASELYVFLPGIQYGVDER---------GCLHISGA---V------------------TNGQ-TVQTNDLVEIHG  240 (358)
T ss_dssp             ECSSTTCCSCEEECTTCEEEECTT---------SEEEEESG---G------------------GTTC-CEEEEEEEEECS
T ss_pred             cccccccceeeccCCCeEEEecCc---------CceEEecc---c------------------ccCc-ceecCCcccccc
Confidence            333455678999999999998 43         89999998   1                  1467 999999999999


Q ss_pred             CCeEEEEecCCCeEEECcEeeChHHHHHHH---HcCCCccEEEEE-EEeCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHh
Q psy5016         405 DGYGQVVGRIKDMIIRGGENIYPKEIEEFI---QTHPNVLEAYAY-GVPDERMGEEVGISIKLKENAKLNADDIRTFCKG  480 (485)
Q Consensus       405 ~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l---~~~~~V~ea~vv-~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~  480 (485)
                      +| ++++||+||+||++|++|+|.|||++|   ..||+|.+|+|+ +.+++..|+.++|+|+...+ ....++|+++|++
T Consensus       241 ~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~~  318 (358)
T 4gs5_A          241 NA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEIRS  318 (358)
T ss_dssp             SE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHHHH
T ss_pred             Cc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHHHh
Confidence            88 566799999999999999999999877   468999998887 67888889999998876543 3455789999999


Q ss_pred             hCCCC
Q psy5016         481 KVSKF  485 (485)
Q Consensus       481 ~l~~y  485 (485)
                      +|++|
T Consensus       319 ~L~~~  323 (358)
T 4gs5_A          319 RVSTY  323 (358)
T ss_dssp             HSCGG
T ss_pred             hCCCC
Confidence            99876

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.96  E-value=5e-30  Score=267.72  Aligned_cols=173  Identities=13%  Similarity=0.119  Sum_probs=143.1

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC-C-CCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM-F-KDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWP  362 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~-~-~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v  362 (485)
                      +||+++++++.+++.+.|+    ..+++.||+||++ . ...........+.|.+++.++| |+  +..+++|+.|||+|
T Consensus       213 ~gGe~l~~~~~~~~~~~~g----~~v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v  288 (436)
T 3qov_A          213 IGAEPHTDEQRRKIERMLN----VKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVL  288 (436)
T ss_dssp             EESSCCCHHHHHHHHHHHT----SEEEEEEEEGGGTEEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEE
T ss_pred             EeCCcCCHHHHHHHHHHhC----ccEEecCcchhhcCCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEE
Confidence            8899999999999999886    4567999999973 2 1111112234677778999999 73  66799999999999


Q ss_pred             ecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecCC------e---EEEEecCCCeEEECcEeeChHHHHHH
Q psy5016         363 NSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEF  433 (485)
Q Consensus       363 ~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~G------~---l~i~GR~~d~I~~~G~~v~p~eIE~~  433 (485)
                      +|+              +...+    +++ ||+|||+|++|++|      +   ++|+||.||+||++|++|+|.|||++
T Consensus       289 ~~~--------------~~~~~----~~~-~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~  349 (436)
T 3qov_A          289 TTL--------------DREMM----PLI-RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKI  349 (436)
T ss_dssp             EES--------------SCCSS----CCC-SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHH
T ss_pred             ecc--------------CcCCc----eEE-EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHH
Confidence            998              23344    567 99999999999998      5   69999999999999999999999999


Q ss_pred             HHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCC----HHHHHHHHHhhCCC
Q psy5016         434 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN----ADDIRTFCKGKVSK  484 (485)
Q Consensus       434 l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~----~~~l~~~l~~~l~~  484 (485)
                      |.+||+|.+++|++.+++..++.++++|+++ +...+    .+++.++|+++|+.
T Consensus       350 l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~  403 (436)
T 3qov_A          350 LVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKD  403 (436)
T ss_dssp             HTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHH
Confidence            9999999999999999988889999999998 55554    56788888777653

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.96  E-value=1.9e-29  Score=263.49  Aligned_cols=174  Identities=13%  Similarity=0.068  Sum_probs=141.7

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCC-CC-CC-ccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEK-MF-KD-VKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTW  361 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt-~~-~~-~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~  361 (485)
                      +||+++++++.+.+.+.|+    ..+++.||+||+ +. .. .........+.|.+++.++| |+  +..+++|+.|||+
T Consensus       217 ~gGe~l~~~~~~~~~~~~g----~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~  292 (437)
T 2y27_A          217 FGAEPWTNDMRVAIEQRMG----IDAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELV  292 (437)
T ss_dssp             EESSCCCHHHHHHHHHHHT----SEEEEEEEETTTTEEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEE
T ss_pred             EcCccCCHHHHHHHHHHHC----cCEEecCCchhhcCCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEE
Confidence            8999999999999998886    446799999997 32 11 11111113566778999999 74  6779999999999


Q ss_pred             EecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec-CCeE-----EEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016         362 PNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ  435 (485)
Q Consensus       362 v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~-~G~l-----~i~GR~~d~I~~~G~~v~p~eIE~~l~  435 (485)
                      |+|.              +.+.|    +++ ||+|||+|++|+ +|++     +|+||.||+||++|++|+|.|||++|.
T Consensus       293 v~~~--------------t~~~~----~~~-~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~  353 (437)
T 2y27_A          293 FTSL--------------TKEAL----PII-RYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL  353 (437)
T ss_dssp             EEES--------------SCSSS----CCC-SEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT
T ss_pred             EecC--------------CcCCc----hhh-eeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH
Confidence            9997              23344    467 999999999999 6986     899999999999999999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCC---CCHHHHHHHHHhhCCC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVSK  484 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~  484 (485)
                      +||+|.+++|++++++..++.++++|+++++..   .+.++++++|+++|++
T Consensus       354 ~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~  405 (437)
T 2y27_A          354 KQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKS  405 (437)
T ss_dssp             TCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHH
Confidence            999999999999998777889999999887643   2346788888887654

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.96  E-value=4.1e-29  Score=261.36  Aligned_cols=174  Identities=15%  Similarity=0.148  Sum_probs=140.3

Q ss_pred             ccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC-CCCc--cCccccCcccccCCcEEEE-cC--CCCCCCCCceEEE
Q psy5016         288 YNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM-FKDV--KNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTW  361 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~-~~~~--~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~  361 (485)
                      +||+++++++.+++.+.|+    ..+++.||+||++ ....  ........+.|.+++.++| |+  +..+++|+.|||+
T Consensus       219 ~gGe~l~~~~~~~~~~~~g----~~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~  294 (443)
T 2y4o_A          219 FGAEPWTQALRNEVETRVG----IDALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELV  294 (443)
T ss_dssp             EESSCCCHHHHHHHHHHHT----CEEEEEEEETTTTEEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEE
T ss_pred             ECCCcCCHHHHHHHHHHhC----cCEEeccCchhhcCCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEE
Confidence            8999999999999999886    4467999999963 2111  1111112555678999999 74  6779999999999


Q ss_pred             EecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC-CeE-----EEEecCCCeEEECcEeeChHHHHHHHH
Q psy5016         362 PNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ  435 (485)
Q Consensus       362 v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~-G~l-----~i~GR~~d~I~~~G~~v~p~eIE~~l~  435 (485)
                      |+|.              +++.|    +++ ||+|||+|++|++ |++     +|+||.||+||++|++|+|.|||++|.
T Consensus       295 v~~~--------------t~~~~----p~~-~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~  355 (443)
T 2y4o_A          295 FTSL--------------TKEAM----PVI-RYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV  355 (443)
T ss_dssp             EEES--------------SCSSS----CCS-SEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH
T ss_pred             EeCC--------------CcccC----hhh-eeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH
Confidence            9997              23344    467 9999999999999 987     899999999999999999999999999


Q ss_pred             cCCCccEEEEEEEeCCCCCcEEEEEEEEcC--CC---CCCHHHHHHHHHhhCCC
Q psy5016         436 THPNVLEAYAYGVPDERMGEEVGISIKLKE--NA---KLNADDIRTFCKGKVSK  484 (485)
Q Consensus       436 ~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~--~~---~~~~~~l~~~l~~~l~~  484 (485)
                      +||+|.++++++++++..++.++++|++++  +.   ..+.++++++|+++|++
T Consensus       356 ~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~  409 (443)
T 2y4o_A          356 ALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT  409 (443)
T ss_dssp             TSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHH
Confidence            999999999999988777889999999875  22   23446788888877653

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.94  E-value=1.5e-26  Score=245.96  Aligned_cols=166  Identities=28%  Similarity=0.420  Sum_probs=149.4

Q ss_pred             CcCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhh
Q psy5016          10 QFSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRR   86 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~   86 (485)
                      ..+++  |+|+++++|+| ++|+++|.|++|||+|+|++++.|||++|+.|+++|..++||+||                
T Consensus       318 ~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG----------------  381 (503)
T 4fuq_A          318 VPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG----------------  381 (503)
T ss_dssp             CTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEE----------------
T ss_pred             cCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcc----------------
Confidence            34555  99999999999 779999999999999999999999999999999999989999999                


Q ss_pred             hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016          87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  166 (485)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~  166 (485)
                                           |++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+++|++++++..++.
T Consensus       382 ---------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~  440 (503)
T 4fuq_A          382 ---------------------DLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEG  440 (503)
T ss_dssp             ---------------------EEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred             ---------------------eeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCce
Confidence                                 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCcc
Q psy5016         167 VGISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYY  212 (485)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~  212 (485)
                      +.++|+++++...+.++++++|+++...+..      .++++.++++++..+
T Consensus       441 ~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~  492 (503)
T 4fuq_A          441 VTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKN  492 (503)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHH
T ss_pred             eEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHH
Confidence            9999999998888999999999887655433      345556666655443

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.94  E-value=2e-26  Score=246.89  Aligned_cols=167  Identities=28%  Similarity=0.395  Sum_probs=149.5

Q ss_pred             CCCcCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHH
Q psy5016           8 DLQFSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI   84 (485)
Q Consensus         8 ~~~~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~   84 (485)
                      +...+++  |+|+++++|+| ++|++++.|++|||+|+|++++.|||++|+.|++.|..++||+||              
T Consensus       351 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TG--------------  416 (536)
T 3ni2_A          351 DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG--------------  416 (536)
T ss_dssp             CCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE--------------
T ss_pred             cCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcc--------------
Confidence            3455666  99999999999 559999999999999999999999999999999999889999999              


Q ss_pred             hhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                             |++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|
T Consensus       417 -----------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g  473 (536)
T 3ni2_A          417 -----------------------DIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG  473 (536)
T ss_dssp             -----------------------EEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred             -----------------------cEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence                                   999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         165 EEVGISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      +.++++|+..++...+.++|+++|+++...+..      .++++.+.++++..
T Consensus       474 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R  526 (536)
T 3ni2_A          474 EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILR  526 (536)
T ss_dssp             EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCH
T ss_pred             ceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeH
Confidence            999999999988888999999999887655533      34555555555543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.93  E-value=9.6e-26  Score=242.35  Aligned_cols=149  Identities=28%  Similarity=0.399  Sum_probs=138.8

Q ss_pred             CcCcc--ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhh
Q psy5016          10 QFSTL--SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRR   86 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~   86 (485)
                      ..+++  |+|+++++|+| ++|++++.|++|||+|+|+++|.|||++++.|++.|.+++||+||                
T Consensus       360 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG----------------  423 (548)
T 2d1s_A          360 KPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG----------------  423 (548)
T ss_dssp             CTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE----------------
T ss_pred             CCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEcc----------------
Confidence            34455  99999999999 679999999999999999999999999999999999889999999                


Q ss_pred             hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016          87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  166 (485)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~  166 (485)
                                           |++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++++++..|+.
T Consensus       424 ---------------------Dl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~  482 (548)
T 2d1s_A          424 ---------------------DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGEL  482 (548)
T ss_dssp             ---------------------EEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred             ---------------------CEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCee
Confidence                                 99999999999999999999999999999999999999999999999999999998999


Q ss_pred             EEEEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         167 VGISIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      +.++|+++++...+.++|+++|+++...+
T Consensus       483 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~  511 (548)
T 2d1s_A          483 PGAVVVLESGKNMTEKEVMDYVASQVSNA  511 (548)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHTTSCGG
T ss_pred             eEEEEEEcCCCCCCHHHHHHHHHHhcccc
Confidence            99999998887788899999998765444

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.93  E-value=9.7e-26  Score=244.03  Aligned_cols=165  Identities=25%  Similarity=0.364  Sum_probs=138.4

Q ss_pred             CCcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc-----cccccccCCCcccccccccCCCceecCcccccchhhhH
Q psy5016           9 LQFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG-----HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSA   81 (485)
Q Consensus         9 ~~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~-----~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~   81 (485)
                      ...+++  |+|+++++|+|++|++++.|++|||+|+|     +++|.|||++|++|++.|. +|||+||           
T Consensus       390 ~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TG-----------  457 (580)
T 3etc_A          390 PKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTG-----------  457 (580)
T ss_dssp             CCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEE-----------
T ss_pred             CCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecC-----------
Confidence            345566  99999999999999999999999999997     7899999999999999996 8999999           


Q ss_pred             HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                                |++++++||+++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++
T Consensus       458 --------------------------Dlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~  511 (580)
T 3etc_A          458 --------------------------DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDP  511 (580)
T ss_dssp             --------------------------EEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred             --------------------------cEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecc
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEcCCcCCC---HHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         162 RMGEEVGISIKLKENAKLN---AYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      ..|+.+.++|+++++...+   .++|+++|+++...+..      ++++++++++++..
T Consensus       512 ~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R  570 (580)
T 3etc_A          512 VRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR  570 (580)
T ss_dssp             TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------
T ss_pred             CCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcH
Confidence            9999999999999876544   36788888776554433      34555555555543

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.93  E-value=1.8e-25  Score=237.90  Aligned_cols=151  Identities=26%  Similarity=0.346  Sum_probs=133.5

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCC---CCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHH
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPF---GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI   84 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~---g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~   84 (485)
                      ..+++  |+|+++++|+|++|++++.   |++|||+|+|++++.|||++|+.|+++|.+++||+||              
T Consensus       322 ~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TG--------------  387 (505)
T 3nyq_A          322 RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG--------------  387 (505)
T ss_dssp             CTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEE--------------
T ss_pred             CCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccC--------------
Confidence            34555  9999999999999999886   8999999999999999999999999999989999999              


Q ss_pred             hhhcchhhhhhhhhcccccccccceEEEecCccEEEeecc-CceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC
Q psy5016          85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  163 (485)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~-~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~  163 (485)
                                             |++++++||+++++||+ ||+||++|++|+|.|||++|.+||+|.+++|++++++..
T Consensus       388 -----------------------Dl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~  444 (505)
T 3nyq_A          388 -----------------------DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL  444 (505)
T ss_dssp             -----------------------EEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred             -----------------------CeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCC
Confidence                                   99999999999999998 599999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEcC-CcCCCHHHHHHhhcccchhhHh
Q psy5016         164 GEEVGISIKLKE-NAKLNAYEDKSISSDYHEFETM  197 (485)
Q Consensus       164 ~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~  197 (485)
                      ++.++++|++.+ +...+.++|+++|+++...+..
T Consensus       445 g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~  479 (505)
T 3nyq_A          445 GERIVAWIVPADPAAPPALGTLADHVAARLAPHKR  479 (505)
T ss_dssp             EEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGS
T ss_pred             CcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcC
Confidence            999999999986 4567788999999887655533

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.93  E-value=2.1e-25  Score=240.59  Aligned_cols=160  Identities=21%  Similarity=0.254  Sum_probs=142.7

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccC------CCceecCcccccchhhhHHHHhhhc
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP------DRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~------~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      |+|+++++|+|++|++++.|++|||+|+|+++|.|||++|+.|+++|..      ++||+||                  
T Consensus       351 p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TG------------------  412 (563)
T 1amu_A          351 PIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG------------------  412 (563)
T ss_dssp             ECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEE------------------
T ss_pred             eeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecC------------------
Confidence            9999999999999999999999999999999999999999999998853      4699999                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (485)
                                         |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++
T Consensus       413 -------------------Dlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~  473 (563)
T 1amu_A          413 -------------------DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC  473 (563)
T ss_dssp             -------------------EEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEE
T ss_pred             -------------------CEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEE
Confidence                               9999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCccc
Q psy5016         169 ISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~  213 (485)
                      ++|++.+  ..+.++|+++|+++...+..      +++++.++++++....
T Consensus       474 a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~  522 (563)
T 1amu_A          474 AYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQ  522 (563)
T ss_dssp             EEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGG
T ss_pred             EEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHh
Confidence            9998764  46788999999887655433      4566667777665544

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.92  E-value=2.2e-25  Score=239.08  Aligned_cols=139  Identities=34%  Similarity=0.511  Sum_probs=131.1

Q ss_pred             ccCC-cEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSS-FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~-~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+++ .+++|+|++|++++.|++|||+|+|+++|+|||++|+.|+++|..++||+||                       
T Consensus       356 p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG-----------------------  412 (539)
T 1mdb_A          356 PMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG-----------------------  412 (539)
T ss_dssp             ESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE-----------------------
T ss_pred             ccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecC-----------------------
Confidence            7765 4899999999999999999999999999999999999999999889999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.++|++
T Consensus       413 --------------Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~  478 (539)
T 1mdb_A          413 --------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIP  478 (539)
T ss_dssp             --------------EEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             --------------ceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999999889999999998


Q ss_pred             cCCcCCCHHHHHHhhccc
Q psy5016         174 KENAKLNAYEDKSISSDY  191 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~  191 (485)
                      ++ ...+.++|+++|+++
T Consensus       479 ~~-~~~~~~~l~~~l~~~  495 (539)
T 1mdb_A          479 RD-EAPKAAELKAFLRER  495 (539)
T ss_dssp             SS-SCCCHHHHHHHHHHT
T ss_pred             CC-CCCCHHHHHHHHHhC
Confidence            74 457788999999875

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.92  E-value=3.7e-25  Score=235.14  Aligned_cols=147  Identities=31%  Similarity=0.471  Sum_probs=136.6

Q ss_pred             cCcc--ccCCcEEEEEcCCC---ccCCCCCceEEEEE-ccccccccCCCcccccccccCCCceecCcccccchhhhHHHH
Q psy5016          11 FSTL--SSSSFQAKVVDHNN---RIVPFGTPGELLIR-GHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAI   84 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~---~~~~~g~~Gel~i~-~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~   84 (485)
                      .+++  |.++++++|+|+++   ++++.|++|||+|+ |+++|.|||++|+.|++.| .++||+||              
T Consensus       320 ~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TG--------------  384 (504)
T 1t5h_X          320 TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTS--------------  384 (504)
T ss_dssp             SSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEE--------------
T ss_pred             CCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccC--------------
Confidence            3444  99999999999888   99999999999999 8999999999999999999 58999999              


Q ss_pred             hhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          85 RRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                             |++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+|+|++++++..|
T Consensus       385 -----------------------Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g  441 (504)
T 1t5h_X          385 -----------------------DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG  441 (504)
T ss_dssp             -----------------------EEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSS
T ss_pred             -----------------------cEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCC
Confidence                                   999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEcCCcCCCHHHHHHhhcc-cchhh
Q psy5016         165 EEVGISIKLKENAKLNAYEDKSISSD-YHEFE  195 (485)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~  195 (485)
                      +.+.++|+++++...+.++|+++|++ +...+
T Consensus       442 ~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~  473 (504)
T 1t5h_X          442 QSVTACVVPRLGETLSADALDTFCRSSELADF  473 (504)
T ss_dssp             EEEEEEEEECTTCCCCHHHHHHHHHTSSCCGG
T ss_pred             cEEEEEEEecCCcCcCHHHHHHHHhhccCccc
Confidence            99999999998877888999999986 54443

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.92  E-value=2.8e-26  Score=246.47  Aligned_cols=168  Identities=26%  Similarity=0.362  Sum_probs=71.0

Q ss_pred             CCcCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016           9 LQFSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus         9 ~~~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      ...+++  |+|+++++|+|+ +|++++.|++|||+|+|+++|.|||++++.|++.|..++||+||               
T Consensus       357 ~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TG---------------  421 (550)
T 3rix_A          357 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG---------------  421 (550)
T ss_dssp             CCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE---------------
T ss_pred             CCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecC---------------
Confidence            344556  999999999994 59999999999999999999999999999999999889999999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  165 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~  165 (485)
                                            |++++++||+++++||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+
T Consensus       422 ----------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~  479 (550)
T 3rix_A          422 ----------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE  479 (550)
T ss_dssp             ----------------------EEEEECTTCCEEEC--------------------------------------------
T ss_pred             ----------------------cEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCc
Confidence                                  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEcCCcCCCHHHHHHhhcccchhh-------HhhhhhhcCCCCCCCccc
Q psy5016         166 EVGISIKLKENAKLNAYEDKSISSDYHEFE-------TMYDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~I~~~~n~~l~~~~  213 (485)
                      .+.++|+++++...+.++++++|+++...+       ...++++.++++++....
T Consensus       480 ~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~  534 (550)
T 3rix_A          480 LPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARK  534 (550)
T ss_dssp             -------------------------------------------------------
T ss_pred             eEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHH
Confidence            999999999887788889999888765432       235667777777665544

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.92  E-value=1.5e-25  Score=240.81  Aligned_cols=160  Identities=26%  Similarity=0.385  Sum_probs=119.1

Q ss_pred             ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCccccccccc--CCC--ceecCcccccchhhhHHHHhhhcc
Q psy5016          15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG--PDR--WLRTGRYKKTSFLYSAMAIRRKLK   89 (485)
Q Consensus        15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~--~~~--~~~tg~~~~~~~~~~~~~~~~~~~   89 (485)
                      |+|+++++|+| ++|++++.|++|||+|+|++++.|||++++.|+++|.  .++  ||+||                   
T Consensus       361 p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TG-------------------  421 (549)
T 3g7s_A          361 PMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG-------------------  421 (549)
T ss_dssp             ECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEE-------------------
T ss_pred             cCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccC-------------------
Confidence            99999999999 7899999999999999999999999999999999884  466  99999                   


Q ss_pred             hhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEE
Q psy5016          90 PLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  169 (485)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~  169 (485)
                                        |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.+
T Consensus       422 ------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a  483 (549)
T 3g7s_A          422 ------------------DVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKA  483 (549)
T ss_dssp             ------------------EEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEE
T ss_pred             ------------------cEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEE
Confidence                              99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCC--cCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         170 SIKLKEN--AKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       170 ~~~~~~~--~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      +|+++++  ...+.++|+++|+++...+..      +++++.++++++..
T Consensus       484 ~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R  533 (549)
T 3g7s_A          484 FIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLR  533 (549)
T ss_dssp             EEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------
T ss_pred             EEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeH
Confidence            9999887  567889999999887655433      34455555555543

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.92  E-value=2.2e-25  Score=239.17  Aligned_cols=161  Identities=25%  Similarity=0.338  Sum_probs=109.6

Q ss_pred             ccCCcEEEEEcCCCccCCC--CCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPF--GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+|+++++|+|++|++++.  +++|||+|+||+++.|||++|+.|+++|.+++||+||                      
T Consensus       360 p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TG----------------------  417 (541)
T 1v25_A          360 PIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG----------------------  417 (541)
T ss_dssp             ECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEE----------------------
T ss_pred             cCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcC----------------------
Confidence            9999999999999999985  3689999999999999999999999999889999999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..++.+.++|+
T Consensus       418 ---------------Dlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv  482 (541)
T 1v25_A          418 ---------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVV  482 (541)
T ss_dssp             ---------------EEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-
T ss_pred             ---------------CEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEE
Confidence                           99999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcCCcCCCHHHHHHhhcc-cchhh------HhhhhhhcCCCCCCCccc
Q psy5016         173 LKENAKLNAYEDKSISSD-YHEFE------TMYDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~-~~~~~------~~~~~I~~~~n~~l~~~~  213 (485)
                      ++ +...+.++++++|++ +...+      ...++++.++++++....
T Consensus       483 ~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~  529 (541)
T 1v25_A          483 PR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRA  529 (541)
T ss_dssp             -------------------CCCTTTSCSBC--------------CCTT
T ss_pred             EC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHH
Confidence            86 445566788888876 43332      234556666666555433

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.92  E-value=4.6e-26  Score=245.93  Aligned_cols=161  Identities=24%  Similarity=0.231  Sum_probs=69.0

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCC--------CceecCcccccchhhhHHHHhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD--------RWLRTGRYKKTSFLYSAMAIRR   86 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~--------~~~~tg~~~~~~~~~~~~~~~~   86 (485)
                      |+|+++++|+|++|++++.|++|||+|+|+++|.|||++++.|+++|..+        +||+||                
T Consensus       388 p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TG----------------  451 (570)
T 4gr5_A          388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTG----------------  451 (570)
T ss_dssp             ECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEE----------------
T ss_pred             eeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCC----------------
Confidence            99999999999999999999999999999999999999999999998543        799999                


Q ss_pred             hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016          87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  166 (485)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~  166 (485)
                                           |++++++||+++|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.
T Consensus       452 ---------------------Dlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~  510 (570)
T 4gr5_A          452 ---------------------DLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQ  510 (570)
T ss_dssp             ---------------------EEEEECTTSCEEEEEC-------------------------------------------
T ss_pred             ---------------------CeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeE
Confidence                                 99999999999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEEEEcCC-cCCCHHHHHHhhcccchhhH------hhhhhhcCCCCCCCcc
Q psy5016         167 VGISIKLKEN-AKLNAYEDKSISSDYHEFET------MYDSIMAHPNRTTPYY  212 (485)
Q Consensus       167 ~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~------~~~~I~~~~n~~l~~~  212 (485)
                      +.++|+++++ ...+.++|+++|+++...+.      ..+++++++++++...
T Consensus       511 ~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~  563 (570)
T 4gr5_A          511 LVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRR  563 (570)
T ss_dssp             -----------------------------------------------------
T ss_pred             EEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchH
Confidence            9999988654 35677889999887754442      3455566666655443

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.92  E-value=7.7e-25  Score=240.16  Aligned_cols=164  Identities=20%  Similarity=0.224  Sum_probs=140.9

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc--cccccccCCCccccccccc--CCCceecCcccccchhhhHHH
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIG--PDRWLRTGRYKKTSFLYSAMA   83 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~tg~~~~~~~~~~~~~   83 (485)
                      ..+++  |+|+++++|+|++|++++.|++|||+|+|  |++++|||++++.+.+.+.  .+|||+||             
T Consensus       433 ~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TG-------------  499 (652)
T 1pg4_A          433 KAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG-------------  499 (652)
T ss_dssp             CTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEE-------------
T ss_pred             cCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECC-------------
Confidence            44555  99999999999999999999999999999  7999999999998887763  37899999             


Q ss_pred             HhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCC
Q psy5016          84 IRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  163 (485)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~  163 (485)
                                              |++++++||+++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++..
T Consensus       500 ------------------------Dlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~  555 (652)
T 1pg4_A          500 ------------------------DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK  555 (652)
T ss_dssp             ------------------------EEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTT
T ss_pred             ------------------------cEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCC
Confidence                                    99999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEcCCcCCC---HHHHHHhhcccchhhHh------hhhhhcCCCCCCC
Q psy5016         164 GEEVGISIKLKENAKLN---AYEDKSISSDYHEFETM------YDSIMAHPNRTTP  210 (485)
Q Consensus       164 ~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~  210 (485)
                      |+.++++|+++++...+   .++|+++|+++...+..      .++++++.++++.
T Consensus       556 g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~  611 (652)
T 1pg4_A          556 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM  611 (652)
T ss_dssp             EEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBC
T ss_pred             CeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccch
Confidence            99999999998876554   46788888776554433      3344444444443

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.91  E-value=3.9e-25  Score=235.79  Aligned_cols=164  Identities=21%  Similarity=0.207  Sum_probs=135.4

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccc---cCCCceecCcccccchhhhHHHHhhhcchh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI---GPDRWLRTGRYKKTSFLYSAMAIRRKLKPL   91 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~---~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~   91 (485)
                      |+|+++++|+|++|++++.|++|||+|+|+++|.|||++++.|+++|   .+++||+||                     
T Consensus       327 p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG---------------------  385 (521)
T 3l8c_A          327 PKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTG---------------------  385 (521)
T ss_dssp             ECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE---------------------
T ss_pred             ccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCC---------------------
Confidence            99999999999999999999999999999999999999999999988   457899999                     


Q ss_pred             hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC-CCceEEEE
Q psy5016          92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER-MGEEVGIS  170 (485)
Q Consensus        92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~  170 (485)
                                      |++++++||+++++||.||+||++|+||+|.|||++|.+||.|.+++|++.++.. .++.+.++
T Consensus       386 ----------------Dlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~  449 (521)
T 3l8c_A          386 ----------------DIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAY  449 (521)
T ss_dssp             ----------------EEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEE
T ss_pred             ----------------CEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEE
Confidence                            9999999999999999999999999999999999999999999999999987554 46889999


Q ss_pred             EEEcCCcCCC-------HHHHHHhhcccchhhHh------hhhhhcCCCCCCCccccc
Q psy5016         171 IKLKENAKLN-------AYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQWW  215 (485)
Q Consensus       171 ~~~~~~~~~~-------~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~~i  215 (485)
                      |+++++...+       .++|+++|+++...+..      .++++.++++++......
T Consensus       450 vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~  507 (521)
T 3l8c_A          450 IVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLI  507 (521)
T ss_dssp             EEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHH
T ss_pred             EEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHh
Confidence            9998774322       56888888887655433      566777777777655543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.91  E-value=1.7e-25  Score=240.21  Aligned_cols=161  Identities=30%  Similarity=0.398  Sum_probs=72.0

Q ss_pred             cc-CCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SS-SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~-~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+ ++++++|+|++|++++.|++|||+|+|++++.|||++|+.|+++|.+++||+||                       
T Consensus       365 p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG-----------------------  421 (544)
T 3o83_A          365 PISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG-----------------------  421 (544)
T ss_dssp             ESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEE-----------------------
T ss_pred             ecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcC-----------------------
Confidence            64 899999999999999999999999999999999999999999999889999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.++|++
T Consensus       422 --------------Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~  487 (544)
T 3o83_A          422 --------------DLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVS  487 (544)
T ss_dssp             --------------EEEEECTTSCEEEEEEEC------------------------------------------------
T ss_pred             --------------CEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEe
Confidence                          999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCcCCCHHHHHHhhcc-cchhh------HhhhhhhcCCCCCCCccc
Q psy5016         174 KENAKLNAYEDKSISSD-YHEFE------TMYDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~-~~~~~------~~~~~I~~~~n~~l~~~~  213 (485)
                      ++ ...+.+++++++++ +...+      ..+++++.++++++....
T Consensus       488 ~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~  533 (544)
T 3o83_A          488 RN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQ  533 (544)
T ss_dssp             -----------------------------------------------
T ss_pred             CC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHH
Confidence            76 34566778888776 33332      335566777777665443

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.91  E-value=1.5e-24  Score=231.43  Aligned_cols=161  Identities=27%  Similarity=0.464  Sum_probs=141.7

Q ss_pred             cCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhc
Q psy5016          11 FSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        11 ~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      .+++  |+++++++|+|++|++++.| +|||+|+|++++.|||++|+.|++.|. ++||+||                  
T Consensus       336 ~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~-~g~~~TG------------------  395 (517)
T 3r44_A          336 AGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTG------------------  395 (517)
T ss_dssp             TTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEE-TTEEEEE------------------
T ss_pred             CCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhc-CCCEecc------------------
Confidence            3445  99999999999999999999 899999999999999999999999994 8999999                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (485)
                                         |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.+.
T Consensus       396 -------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~  456 (517)
T 3r44_A          396 -------------------DIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAA  456 (517)
T ss_dssp             -------------------EEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred             -------------------eeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEE
Confidence                               9999999999999999999999999999999999999999999999999999999888888


Q ss_pred             EEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         169 ISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      ++| +.++...+.++|+++|+++...+..      .++++.++++++..
T Consensus       457 a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R  504 (517)
T 3r44_A          457 AIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILK  504 (517)
T ss_dssp             EEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCH
T ss_pred             EEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccH
Confidence            887 6666678899999999877655533      33455555554443

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.91  E-value=3e-24  Score=228.51  Aligned_cols=159  Identities=20%  Similarity=0.156  Sum_probs=135.9

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCccccccccc---CCCceecCcccccchhhhHHHHhhhcchh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG---PDRWLRTGRYKKTSFLYSAMAIRRKLKPL   91 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~---~~~~~~tg~~~~~~~~~~~~~~~~~~~~~   91 (485)
                      |+|+++++|+|++|++++.|++|||+|+|+++|.|||++|+.|++.|.   +++||+||                     
T Consensus       323 ~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG---------------------  381 (511)
T 3e7w_A          323 AKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG---------------------  381 (511)
T ss_dssp             ECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE---------------------
T ss_pred             eeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC---------------------
Confidence            889999999999999999999999999999999999999999999883   22379999                     


Q ss_pred             hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016          92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  171 (485)
Q Consensus        92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (485)
                                      |++++ +||+++++||.||+||++|+||+|.|||++|.+||.|.+++|++++++..++.+.++|
T Consensus       382 ----------------Dlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v  444 (511)
T 3e7w_A          382 ----------------DAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAI  444 (511)
T ss_dssp             ----------------EEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEE
T ss_pred             ----------------CeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEE
Confidence                            99999 5999999999999999999999999999999999999999999999998899999999


Q ss_pred             EEcCCcCCCH----HHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         172 KLKENAKLNA----YEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       172 ~~~~~~~~~~----~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      +++++...+.    ++|+++|+++...+..      .++++.++++++..
T Consensus       445 v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R  494 (511)
T 3e7w_A          445 VPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDR  494 (511)
T ss_dssp             EECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCH
T ss_pred             EeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccH
Confidence            9987755543    5677777665444322      34455555555443

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.91  E-value=1.7e-24  Score=233.76  Aligned_cols=164  Identities=24%  Similarity=0.316  Sum_probs=140.6

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEE-----ccccccccCCCcccccccccCCCceecCcccccchhhhHH
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIR-----GHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~-----~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~   82 (485)
                      ..+++  |+|+++++|+|++|+++|.|++|||+|+     |+++|.|||++++.|.+.|. ++||+||            
T Consensus       372 ~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TG------------  438 (570)
T 3c5e_A          372 KPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLG------------  438 (570)
T ss_dssp             CTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEE------------
T ss_pred             CCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccc------------
Confidence            44555  9999999999999999999999999999     99999999999999999995 8999999            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  162 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~  162 (485)
                                               |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++.
T Consensus       439 -------------------------Dlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~  493 (570)
T 3c5e_A          439 -------------------------DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV  493 (570)
T ss_dssp             -------------------------EEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred             -------------------------eeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCC
Confidence                                     9999999999999999999999999999999999999999999999999999998


Q ss_pred             CCceEEEEEEEcCCcC--C---CHHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         163 MGEEVGISIKLKENAK--L---NAYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~--~---~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      .|+.+.++|++.++..  .   ..++|+++|+++...+..      .++++.++++++..
T Consensus       494 ~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R  553 (570)
T 3c5e_A          494 RGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQR  553 (570)
T ss_dssp             TEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCH
T ss_pred             CCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcH
Confidence            8999999999876531  1   246777887765544322      34455555555543

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.91  E-value=3.2e-24  Score=228.29  Aligned_cols=160  Identities=20%  Similarity=0.182  Sum_probs=137.9

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccc---cCCCceecCcccccchhhhHHHHhhhcchh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETI---GPDRWLRTGRYKKTSFLYSAMAIRRKLKPL   91 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~---~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~   91 (485)
                      |+++++++|+|++|++++.|++|||+|+|+++|.|||++|+.|++.|   .+++||+||                     
T Consensus       324 ~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG---------------------  382 (512)
T 3fce_A          324 CKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG---------------------  382 (512)
T ss_dssp             ECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE---------------------
T ss_pred             ccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC---------------------
Confidence            89999999999999999999999999999999999999999999987   346799999                     


Q ss_pred             hhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEE
Q psy5016          92 QQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  171 (485)
Q Consensus        92 ~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (485)
                                      |++++ +||+++++||.||+||++|+||+|.|||++|.+||.|.+++|+++++...++.+.++|
T Consensus       383 ----------------Dlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v  445 (512)
T 3fce_A          383 ----------------DAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVV  445 (512)
T ss_dssp             ----------------EEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred             ----------------ceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEE
Confidence                            99999 7999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEcCCcCCCH----HHHHHhhcccchhhHh------hhhhhcCCCCCCCcc
Q psy5016         172 KLKENAKLNA----YEDKSISSDYHEFETM------YDSIMAHPNRTTPYY  212 (485)
Q Consensus       172 ~~~~~~~~~~----~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~  212 (485)
                      ++.++...+.    ++|+++|+++...+..      .++++.++++++...
T Consensus       446 v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~  496 (512)
T 3fce_A          446 VPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRK  496 (512)
T ss_dssp             EECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHH
T ss_pred             ecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHH
Confidence            9987654443    4677777766544432      344555555555443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.91  E-value=2.6e-25  Score=236.61  Aligned_cols=161  Identities=27%  Similarity=0.445  Sum_probs=70.6

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++|++++.|++|||+|+|++++.|||++++.|++.|. ++||+||                        
T Consensus       326 p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TG------------------------  380 (509)
T 3ivr_A          326 PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTG------------------------  380 (509)
T ss_dssp             ECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEE------------------------
T ss_pred             cCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccc------------------------
Confidence            999999999999999999999999999999999999999999999996 8999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeecc--CceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~--~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                   |++++++||+++++||.  ||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+.++|+
T Consensus       381 -------------Dl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~  447 (509)
T 3ivr_A          381 -------------DMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCV  447 (509)
T ss_dssp             -------------EEEEECTTSCEEEEEEC--------------------------------------------------
T ss_pred             -------------cEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEE
Confidence                         99999999999999999  999999999999999999999999999999999999999999999999


Q ss_pred             EcCCcCCCHHHHHHhhcccchhh------HhhhhhhcCCCCCCCccc
Q psy5016         173 LKENAKLNAYEDKSISSDYHEFE------TMYDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~~~~  213 (485)
                      +.++...+.++|+++|+++...+      ...++++.++++++....
T Consensus       448 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~  494 (509)
T 3ivr_A          448 CKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAA  494 (509)
T ss_dssp             -----------------------------------------------
T ss_pred             eCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHH
Confidence            98887788889999998875443      334566666666655433

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.90  E-value=7.2e-25  Score=250.82  Aligned_cols=169  Identities=26%  Similarity=0.374  Sum_probs=76.0

Q ss_pred             CCcCcc--ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016           9 LQFSTL--SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus         9 ~~~~~~--~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      ...+++  |+|+++++|+|+ +|++++.|++|||+|+|+++++|||++|+.|+++|..++||+||               
T Consensus       399 ~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TG---------------  463 (979)
T 3tsy_A          399 VKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTG---------------  463 (979)
T ss_dssp             CCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE---------------
T ss_pred             cCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcC---------------
Confidence            344555  999999999995 59999999999999999999999999999999999889999999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  165 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~  165 (485)
                                            |++++++||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++
T Consensus       464 ----------------------Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~  521 (979)
T 3tsy_A          464 ----------------------DIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGE  521 (979)
T ss_dssp             ----------------------EEEEECTTSCEEEEEESCC---------------------------------------
T ss_pred             ----------------------CEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCc
Confidence                                  9999999999999999999999999999999999999999999999999999998999


Q ss_pred             eEEEEEEEcCCcCCCHHHHHHhhcccchhh------HhhhhhhcCCCCCCCcccc
Q psy5016         166 EVGISIKLKENAKLNAYEDKSISSDYHEFE------TMYDSIMAHPNRTTPYYQW  214 (485)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~~~~~  214 (485)
                      .++++|++.++...+.++|+++|+++...+      ...++++.++++++..+..
T Consensus       522 ~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L  576 (979)
T 3tsy_A          522 VPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDL  576 (979)
T ss_dssp             -------------------------------------------------------
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHH
Confidence            999999998887788889999998876544      3357788888887765543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.90  E-value=1e-24  Score=229.66  Aligned_cols=183  Identities=10%  Similarity=-0.027  Sum_probs=131.8

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCc------ccccch-hhccchhhhHh-------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDW------EYADKC-EKSMQGWAKTL-------------  284 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~------~~~~~~-~pl~~~~~~~~-------------  284 (485)
                      ....-+.++|||||||.||.++++|.+...+.......+.++.      .+...+ .|++|.++...             
T Consensus       181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v  260 (480)
T 3t5a_A          181 EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAV  260 (480)
T ss_dssp             SCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEE
T ss_pred             CCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceE
Confidence            3345577899999999999999999998887776665555542      222222 27777655320             


Q ss_pred             ------------------------------------------------------hhhccCCCCCHHHHHHHHhhhhhccc
Q psy5016         285 ------------------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQN  310 (485)
Q Consensus       285 ------------------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~  310 (485)
                                                                            ..++||+++++++.+++.+.|+..+.
T Consensus       261 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~  340 (480)
T 3t5a_A          261 LTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNL  340 (480)
T ss_dssp             ECCHHHHHHCTHHHHHHTTSSSEEEEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTC
T ss_pred             EECHHHHHHCHHHHHHHHHhhceeEeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCC
Confidence                                                                  01178999999999999999865332


Q ss_pred             --CccccccccCCCCCC----Ccc-------------------------CccccCcccccCCcEEEE-cC--CCCCCCCC
Q psy5016         311 --RIDDVEYEFQEKMFK----DVK-------------------------NYLITPALKGLYHFKKWM-NP--KFSTTTRK  356 (485)
Q Consensus       311 --~~i~~~YG~TEt~~~----~~~-------------------------~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~  356 (485)
                        ..+++.||+||++..    ...                         ....+++|+|++ ++++| |+  +..+++|+
T Consensus       341 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~  419 (480)
T 3t5a_A          341 QERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT  419 (480)
T ss_dssp             CGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB
T ss_pred             ChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC
Confidence              356799999997421    000                         234568999999 99999 75  46699999


Q ss_pred             ceEEEEecCCCCccccccc-Ccccccccccc--------cCCCCCeEecCceEEEecCCeEEEEec
Q psy5016         357 VALTWPNSMDSEARIYHYK-KYLREEENITV--------PDSAGRSIFEKDQFVLREDGYGQVVGR  413 (485)
Q Consensus       357 ~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~--------~~~~g~~~~TGD~~~~d~~G~l~i~GR  413 (485)
                      +|||+|+|+   +++.||| +++.|++.|..        .+.+| ||+|||+|++| ||+|+|+||
T Consensus       420 ~GEl~v~g~---~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~-w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          420 VGEIWVHGD---NVANGYWQKPDESERTFGGKIVTPSPGTPEGP-WLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             CEEEEEEST---TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCC-BEEEEEEEEEE-TTEEEECC-
T ss_pred             EEEEEEeCC---ccccccccCcchhHHHHhhhhccccCCCCCCC-eeeccceeeEE-CCEEEEeCC
Confidence            999999999   9999999 89999888720        11455 99999999997 999999998

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.90  E-value=9.1e-24  Score=230.12  Aligned_cols=160  Identities=28%  Similarity=0.393  Sum_probs=143.1

Q ss_pred             cc-CCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SS-SSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~-~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |+ ++++++|+|++|+++|.|++|||+|+|+++++|||++|+.|+++|.+++||+||                       
T Consensus       360 p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTG-----------------------  416 (617)
T 3rg2_A          360 PMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG-----------------------  416 (617)
T ss_dssp             ESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEE-----------------------
T ss_pred             cCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecC-----------------------
Confidence            54 788999999999999999999999999999999999999999999999999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+.++++.
T Consensus       417 --------------Dl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~  482 (617)
T 3rg2_A          417 --------------DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVV  482 (617)
T ss_dssp             --------------EEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             --------------ceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEe
Confidence                          999999999999999999999999999999999999999999999999999999889999999998


Q ss_pred             cCCcCCCHHHHHHhhccc-chhhHh------hhhhhcCCCCCCCccc
Q psy5016         174 KENAKLNAYEDKSISSDY-HEFETM------YDSIMAHPNRTTPYYQ  213 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~-~~~~~~------~~~I~~~~n~~l~~~~  213 (485)
                      .+  ..+.++++++++++ ...+..      +++++.++++++....
T Consensus       483 ~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~  527 (617)
T 3rg2_A          483 KE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQ  527 (617)
T ss_dssp             SS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHH
T ss_pred             CC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHH
Confidence            76  46788999999873 443322      4566777777666544

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.90  E-value=6.6e-24  Score=226.78  Aligned_cols=147  Identities=27%  Similarity=0.427  Sum_probs=127.3

Q ss_pred             CcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhh
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRK   87 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~   87 (485)
                      ..+++  |+|+++++|+|++|+++|.|++|||+|+|++++.|||++++.|.++|. ++||+||                 
T Consensus       350 ~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TG-----------------  411 (529)
T 2v7b_A          350 EYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSG-----------------  411 (529)
T ss_dssp             CTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEE-----------------
T ss_pred             ccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccC-----------------
Confidence            34555  999999999999999999999999999999999999999999999996 8999999                 


Q ss_pred             cchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          88 LKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                          |++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|+++ ++..++.+
T Consensus       412 --------------------Dl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~  470 (529)
T 2v7b_A          412 --------------------DKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKT  470 (529)
T ss_dssp             --------------------EEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEE
T ss_pred             --------------------ceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEE
Confidence                                999999999999999999999999999999999999999999999999999 66677889


Q ss_pred             EEEEEEcCCcCC---CHHHHHHhhcccchhh
Q psy5016         168 GISIKLKENAKL---NAYEDKSISSDYHEFE  195 (485)
Q Consensus       168 ~~~~~~~~~~~~---~~~~l~~~l~~~~~~~  195 (485)
                      .++|++.++...   ..++|+++|+++...+
T Consensus       471 ~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~  501 (529)
T 2v7b_A          471 RAFVVLKREFAPSEILAEELKAFVKDRLAPH  501 (529)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHHHHHTTSCTT
T ss_pred             EEEEEecCCCCcchhHHHHHHHHHHhhcchh
Confidence            999998876432   2357888887654443

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.89  E-value=8.2e-24  Score=232.38  Aligned_cols=165  Identities=19%  Similarity=0.202  Sum_probs=136.9

Q ss_pred             CcCcc--ccCCcEEEEEcC-CCccCCC-CCceEEEEEc--cccccccCCCcccccccccC--CCceecCcccccchhhhH
Q psy5016          10 QFSTL--SSSSFQAKVVDH-NNRIVPF-GTPGELLIRG--HCNMLGYWEDEQKTKETIGP--DRWLRTGRYKKTSFLYSA   81 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~-~~~~~~~-g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~~--~~~~~tg~~~~~~~~~~~   81 (485)
                      ..+++  |+|+++++|+|+ +|++++. |++|||+|+|  |++++|||++++.+.+.+..  +|||+||           
T Consensus       440 ~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TG-----------  508 (663)
T 1ry2_A          440 KPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG-----------  508 (663)
T ss_dssp             CTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE-----------
T ss_pred             CCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcC-----------
Confidence            44555  999999999999 8999998 9999999999  58999999999988887643  7899999           


Q ss_pred             HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                                |++++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|++++++
T Consensus       509 --------------------------Dlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~  562 (663)
T 1ry2_A          509 --------------------------DGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD  562 (663)
T ss_dssp             --------------------------EEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred             --------------------------CEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecC
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEcCCcC---C-C------HHHHHHhhcccchhhHh------hhhhhcCCCCCCCc
Q psy5016         162 RMGEEVGISIKLKENAK---L-N------AYEDKSISSDYHEFETM------YDSIMAHPNRTTPY  211 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~---~-~------~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~  211 (485)
                      ..|+.++++|+++++..   . +      .++|+++|+++...+..      .++++++.++++..
T Consensus       563 ~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R  628 (663)
T 1ry2_A          563 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMR  628 (663)
T ss_dssp             TTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCH
T ss_pred             CCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchH
Confidence            88999999999987643   2 1      46777777766444322      34455555555443

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.89  E-value=8.4e-23  Score=240.00  Aligned_cols=162  Identities=24%  Similarity=0.246  Sum_probs=145.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccC------CCceecCcccccchhhhHHHHhhhc
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP------DRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~------~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      |+++++++|+|++++++|.|++|||+|+|+++++|||++|+.|+++|.+      ++||+||                  
T Consensus       782 p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTG------------------  843 (1304)
T 2vsq_A          782 PISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTG------------------  843 (1304)
T ss_dssp             ECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEE------------------
T ss_pred             eeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecC------------------
Confidence            9999999999999999999999999999999999999999999999843      4699999                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (485)
                                         |++++++||.++++||+||+||++|++|+|.|||.+|.+||+|.+|+|++.++...++.++
T Consensus       844 -------------------Dl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~  904 (1304)
T 2vsq_A          844 -------------------DLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASIN  904 (1304)
T ss_dssp             -------------------EEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEE
T ss_pred             -------------------CeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEE
Confidence                               9999999999999999999999999999999999999999999999999998888888999


Q ss_pred             EEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCccccc
Q psy5016         169 ISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYYQWW  215 (485)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~~~i  215 (485)
                      ++++..+  ..+.++|+++|+++...+..      +++++.++|+++..+...
T Consensus       905 a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~  955 (1304)
T 2vsq_A          905 AYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLP  955 (1304)
T ss_dssp             EEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCC
T ss_pred             EEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcC
Confidence            9998765  56788999999887665543      456778888877665543

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.88  E-value=3.9e-23  Score=225.27  Aligned_cols=160  Identities=14%  Similarity=0.128  Sum_probs=130.3

Q ss_pred             ccCCcEEEEEcCCCcc-CCCCCceEEEEEccccccccCCCcccccccccCC-------CceecCcccccchhhhHHHHhh
Q psy5016          15 SSSSFQAKVVDHNNRI-VPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPD-------RWLRTGRYKKTSFLYSAMAIRR   86 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~-~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~-------~~~~tg~~~~~~~~~~~~~~~~   86 (485)
                      |+++++++|+|+++++ +|.|++|||+|+|+++++|||++|+.|+++|..+       +||+||                
T Consensus       338 p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTG----------------  401 (620)
T 4dg8_A          338 AIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTG----------------  401 (620)
T ss_dssp             ECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEE----------------
T ss_pred             cccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCC----------------
Confidence            9999999999999887 8999999999999999999999999999999653       789999                


Q ss_pred             hcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCce
Q psy5016          87 KLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  166 (485)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~  166 (485)
                                           |++++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.++...++.
T Consensus       402 ---------------------Dl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l  460 (620)
T 4dg8_A          402 ---------------------DRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL  460 (620)
T ss_dssp             ---------------------EEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE
T ss_pred             ---------------------CEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE
Confidence                                 99999999999999999999999999999999999999999999999999988755444


Q ss_pred             EEEEEEEcCCcCCCHHHHHHhhcccchhh--HhhhhhhcCCCCCCCcccc
Q psy5016         167 VGISIKLKENAKLNAYEDKSISSDYHEFE--TMYDSIMAHPNRTTPYYQW  214 (485)
Q Consensus       167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~I~~~~n~~l~~~~~  214 (485)
                      +.++ +...  ....+.+++.|..+-.+.  ...++++.++++++..+..
T Consensus       461 v~~~-~~~~--~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L  507 (620)
T 4dg8_A          461 LCAW-TGKA--DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAAL  507 (620)
T ss_dssp             EEEE-EECT--TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHH
T ss_pred             EEEE-ecCh--HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHH
Confidence            4444 3322  334466666665554433  3367788888888776554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.88  E-value=1.8e-22  Score=214.16  Aligned_cols=152  Identities=26%  Similarity=0.376  Sum_probs=127.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQ   94 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~   94 (485)
                      |+|+++++|+|++     .|++|||+|+|+++++|||++++.|.+ + .++||+||                        
T Consensus       332 p~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TG------------------------  380 (501)
T 3ipl_A          332 PSANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTG------------------------  380 (501)
T ss_dssp             ECTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEE------------------------
T ss_pred             CCCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecC------------------------
Confidence            9999999999986     567899999999999999999998887 5 48999999                        


Q ss_pred             hhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy5016          95 QQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  174 (485)
Q Consensus        95 ~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (485)
                                   |++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.+.++++..
T Consensus       381 -------------Dl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~  447 (501)
T 3ipl_A          381 -------------DIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE  447 (501)
T ss_dssp             -------------EEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred             -------------CEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC
Confidence                         9999999999999999999999999999999999999999999999999999999999999998874


Q ss_pred             CCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCCcc
Q psy5016         175 ENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTPYY  212 (485)
Q Consensus       175 ~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~~~  212 (485)
                        ...+.++|+++|+++...+..      .++++.++++++..+
T Consensus       448 --~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~  489 (501)
T 3ipl_A          448 --SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRN  489 (501)
T ss_dssp             --SCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC----------
T ss_pred             --CCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHH
Confidence              356789999999887655433      344555555555443

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.87  E-value=6.8e-23  Score=220.51  Aligned_cols=144  Identities=18%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCccccccccc-CCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-PDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+++++++|+|++ +++++.|++|||+|+|+++|.|||++|+.|+..+. +++||+||                      
T Consensus       352 p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TG----------------------  409 (562)
T 3ite_A          352 PLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTG----------------------  409 (562)
T ss_dssp             ECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEE----------------------
T ss_pred             cCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecC----------------------
Confidence            9999999999965 78999999999999999999999999998887654 23499999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcC-CCcceEEEEEeeCCCCCceEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEEVGISI  171 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~  171 (485)
                                     |++++|+||+++|+||.||+||++|+||+|.|||++|.+| +.+.+++|++.+++..++...+++
T Consensus       410 ---------------Dlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~  474 (562)
T 3ite_A          410 ---------------DIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSF  474 (562)
T ss_dssp             ---------------EEEEECTTSCEEEEEEC------------------------------------------------
T ss_pred             ---------------CEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEE
Confidence                           9999999999999999999999999999999999999998 788899999998888887777766


Q ss_pred             EEcCCcCCC-------------HHHHHHhhcccchhh
Q psy5016         172 KLKENAKLN-------------AYEDKSISSDYHEFE  195 (485)
Q Consensus       172 ~~~~~~~~~-------------~~~l~~~l~~~~~~~  195 (485)
                      +..++....             .++|+++|+++...+
T Consensus       475 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y  511 (562)
T 3ite_A          475 VASSGAAVRGELRWINENYKEINNSLRQACEQTLPAY  511 (562)
T ss_dssp             -------------------------------------
T ss_pred             EecccccccccccccccchhhHHHHHHHHHHhhCCcc
Confidence            655443322             236777777765544

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.84  E-value=4.4e-22  Score=215.11  Aligned_cols=137  Identities=23%  Similarity=0.361  Sum_probs=120.7

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccC--------CCceecCcccccchhhhHHHHh
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGP--------DRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~--------~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      |+++  ++|+|++ +++++.|++|||+|+|+++|.|||++|+.|+++|..        ++||+||               
T Consensus       379 p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TG---------------  441 (590)
T 3kxw_A          379 PIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG---------------  441 (590)
T ss_dssp             ESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEE---------------
T ss_pred             CCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecC---------------
Confidence            7777  8999988 899999999999999999999999999999999853        2399999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHH-HcCCCcc--eEEEEEeeCCC
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVL--EAYAYGVPDER  162 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~-~~~~~v~--~~~~~~~~~~~  162 (485)
                                            |+++++ ||+++|+||.||+||++|+||+|.|||++| ..||.|.  +++|++++++.
T Consensus       442 ----------------------Dlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~  498 (590)
T 3kxw_A          442 ----------------------DLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH  498 (590)
T ss_dssp             ----------------------EEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT
T ss_pred             ----------------------cEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC
Confidence                                  999999 999999999999999999999999999999 7899998  89999998876


Q ss_pred             CCceEEEEEEEcCCc--CCCHHHHHHhhcccc
Q psy5016         163 MGEEVGISIKLKENA--KLNAYEDKSISSDYH  192 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~  192 (485)
                       ++.+.+++++.++.  ..+.+++.++|+++.
T Consensus       499 -~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l  529 (590)
T 3kxw_A          499 -EYKLTVMCEVKNRFMDDVAQDNLFNEIFELV  529 (590)
T ss_dssp             -EEEEEEEEEESCTTCCHHHHHHHHHHHHHHH
T ss_pred             -CceEEEEEEeccccccchhHHHHHHHHHHHH
Confidence             68888999887763  345567777776553

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.74  E-value=6.2e-18  Score=176.11  Aligned_cols=128  Identities=20%  Similarity=0.309  Sum_probs=111.0

Q ss_pred             ccCCcEEEEEc-CCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |.+++.++|+| ++|+++++|++|||+|+|.            +.+.+ +++||+||                       
T Consensus       261 ~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~TG-----------------------  304 (436)
T 3qov_A          261 WEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYRTR-----------------------  304 (436)
T ss_dssp             CTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEEEE-----------------------
T ss_pred             ccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEEcC-----------------------
Confidence            77899999999 6799999999999999973            23334 58999999                       


Q ss_pred             hhhhhcccccccccceEEEecCc------c---EEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCC
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  164 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g------~---~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~  164 (485)
                                    |+++++++|      +   ++|+||.||+||++|++|+|.|||++|.+||+|.++++++++++..+
T Consensus       305 --------------Dl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~  370 (436)
T 3qov_A          305 --------------DLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ  370 (436)
T ss_dssp             --------------EEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred             --------------CEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence                          999999998      5   69999999999999999999999999999999999999999988888


Q ss_pred             ceEEEEEEEcCCcCCC----HHHHHHhhcccch
Q psy5016         165 EEVGISIKLKENAKLN----AYEDKSISSDYHE  193 (485)
Q Consensus       165 ~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~  193 (485)
                      +.+.++|+++ +...+    .++++++++++..
T Consensus       371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~  402 (436)
T 3qov_A          371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLK  402 (436)
T ss_dssp             EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEEc-CccccchhhHHHHHHHHHHHHH
Confidence            9999999998 65554    5677777765433

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.73  E-value=4.6e-18  Score=177.41  Aligned_cols=128  Identities=22%  Similarity=0.364  Sum_probs=109.2

Q ss_pred             ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |.+++.++|+|+ +|++++.|++|||+|+|.            +.+.+ +++||+||                       
T Consensus       268 ~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~TG-----------------------  311 (443)
T 2y4o_A          268 WEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYRTR-----------------------  311 (443)
T ss_dssp             CTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEEEE-----------------------
T ss_pred             ccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheeecC-----------------------
Confidence            678999999995 599999999999999972            23344 58899999                       


Q ss_pred             hhhhhcccccccccceEEEecC-ccE-----EEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~-g~~-----~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                    |+++++++ |++     +++||.||+||++|++|+|.|||++|.+||+|.++++++++++..++.+
T Consensus       312 --------------Dl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~  377 (443)
T 2y4o_A          312 --------------DLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRL  377 (443)
T ss_dssp             --------------EEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEE
T ss_pred             --------------CEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceE
Confidence                          99999999 987     8999999999999999999999999999999999999999887778899


Q ss_pred             EEEEEEcC--C---cCCCHHHHHHhhcccc
Q psy5016         168 GISIKLKE--N---AKLNAYEDKSISSDYH  192 (485)
Q Consensus       168 ~~~~~~~~--~---~~~~~~~l~~~l~~~~  192 (485)
                      .++|++++  +   ...+.++++++|+++.
T Consensus       378 ~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l  407 (443)
T 2y4o_A          378 DLAVELRSEAAASVTDGERAALARELQHRI  407 (443)
T ss_dssp             EEEEEECHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCcccccchhhHHHHHHHHHHHHH
Confidence            99999876  2   2234467777776543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.72  E-value=8.1e-18  Score=175.25  Aligned_cols=128  Identities=23%  Similarity=0.303  Sum_probs=110.0

Q ss_pred             ccCCcEEEEEcC-CCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDH-NNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |.+++.++|+|+ +|+++|.|+.|||+|+|.            +.+.+ +++||+||                       
T Consensus       266 ~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~TG-----------------------  309 (437)
T 2y27_A          266 WEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYRTR-----------------------  309 (437)
T ss_dssp             CTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEEEE-----------------------
T ss_pred             ccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheeecC-----------------------
Confidence            678999999996 499999999999999972            33344 58999999                       


Q ss_pred             hhhhhcccccccccceEEEec-CccE-----EEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  167 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~-~g~~-----~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (485)
                                    |++++++ +|++     +++||.||+||++|++|+|.|||++|.+||+|.++++++++++..++.+
T Consensus       310 --------------Dl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l  375 (437)
T 2y27_A          310 --------------DLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVL  375 (437)
T ss_dssp             --------------EEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEE
T ss_pred             --------------CEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceE
Confidence                          9999998 6985     8999999999999999999999999999999999999999887778899


Q ss_pred             EEEEEEcCCcC---CCHHHHHHhhcccc
Q psy5016         168 GISIKLKENAK---LNAYEDKSISSDYH  192 (485)
Q Consensus       168 ~~~~~~~~~~~---~~~~~l~~~l~~~~  192 (485)
                      .++|+++++..   .+.++++++|+++.
T Consensus       376 ~a~v~~~~~~~~~~~~~~~l~~~l~~~l  403 (437)
T 2y27_A          376 TLNVEPCPETAPDTAAIQVAKQALAYDI  403 (437)
T ss_dssp             EEEECBCTTTTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCccchhhhHHHHHHHHHHHH
Confidence            99999887643   33467777776553

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.61  E-value=5.3e-16  Score=157.71  Aligned_cols=139  Identities=16%  Similarity=0.107  Sum_probs=101.3

Q ss_pred             CCCceEEEEEccccccccCCCcccccc-cccCCCceecCcccccchhhhHHHHhhhcchhhhhhhhhcccccccccceEE
Q psy5016          33 FGTPGELLIRGHCNMLGYWEDEQKTKE-TIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFV  111 (485)
Q Consensus        33 ~g~~Gel~i~~~~~~~gy~~~~~~~~~-~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  111 (485)
                      .+..|++.+.+|++..+|+++.+.... .+..++||+||                                     |+++
T Consensus       195 ~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TG-------------------------------------Dlg~  237 (358)
T 4gs5_A          195 GPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTN-------------------------------------DLVE  237 (358)
T ss_dssp             STTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEE-------------------------------------EEEE
T ss_pred             ccccceeeccCCCeEEEecCcCceEEecccccCcceecC-------------------------------------Cccc
Confidence            344566666666666666655443322 23458899999                                     9999


Q ss_pred             EecCccEEEeeccCceEEeCcEEeChHHHHHHHH---cCCCcceEEEE-EeeCCCCCceEEEEEEEcCCcCCCHHHHHHh
Q psy5016         112 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPNVLEAYAY-GVPDERMGEEVGISIKLKENAKLNAYEDKSI  187 (485)
Q Consensus       112 ~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~---~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  187 (485)
                      +|+|| ++++||.||+||++|+||+|.|||++|.   .||+|.+++|+ +.+|+..|+.++++|+.... ..+.++|+++
T Consensus       238 ~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~  315 (358)
T 4gs5_A          238 IHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAE  315 (358)
T ss_dssp             ECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHH
T ss_pred             cccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHH
Confidence            99988 5677999999999999999999998774   58999998876 67899999999888876543 4456788888


Q ss_pred             hcccchhhHh------hhhhhcCCCCCCC
Q psy5016         188 SSDYHEFETM------YDSIMAHPNRTTP  210 (485)
Q Consensus       188 l~~~~~~~~~------~~~I~~~~n~~l~  210 (485)
                      |+++...+..      .++++.++++++.
T Consensus       316 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~  344 (358)
T 4gs5_A          316 IRSRVSTYENPKHIYFAKAFAKTQTDKID  344 (358)
T ss_dssp             HHHHSCGGGSCSCEEEESSCCBCTTSCBC
T ss_pred             HHhhCCCCCCceEEEEECCcCCCCCCChh
Confidence            8876554432      3344555555444

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.49  E-value=8.2e-14  Score=141.63  Aligned_cols=111  Identities=6%  Similarity=-0.110  Sum_probs=72.9

Q ss_pred             ccCCCCCHHHHHHHH-hhhhhcccCccccccccCCCCCCCccCcccc-Ccccc------cCCcEEEE-cC--CCCCCCCC
Q psy5016         288 YNSYAGPVTLRRNLI-DPLEIVQNRIDDVEYEFQEKMFKDVKNYLIT-PALKG------LYHFKKWM-NP--KFSTTTRK  356 (485)
Q Consensus       288 ~~g~~~~~~l~~~~~-~~~~~~~~~~i~~~YG~TEt~~~~~~~~~~~-s~G~p------~pg~~v~I-d~--~~~~~~g~  356 (485)
                      +||+++++++.+++. +.|+.   ..+++.||+||++...  ...+. ++|+|      +|+++++| |+  +..+++|+
T Consensus       238 ~gGe~l~~~~~~~~~~~~~p~---~~v~~~YG~TE~~~~~--~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~  312 (369)
T 3hgu_A          238 LGGTELNLDEIKFIASEILPD---CEFSASYGSTSALGVS--RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGE  312 (369)
T ss_dssp             EESSCCCHHHHHHHHHHTCTT---SEEEEEEEEGGGTEEE--EECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC
T ss_pred             ECCccCCHHHHHHHHHHhCCC---cEEEcccCchhhhcce--eccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCC
Confidence            899999999999999 88842   5568999999975322  22334 49999      99999999 65  66799999


Q ss_pred             ceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC---------CeEEEEecCCCeEEECcE
Q psy5016         357 VALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED---------GYGQVVGRIKDMIIRGGE  423 (485)
Q Consensus       357 ~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~---------G~l~i~GR~~d~I~~~G~  423 (485)
                      +|||+|++...+..+.                    +|+|||+++..+.         ..+..++|.++..++.|.
T Consensus       313 ~GEl~vt~l~~~~~l~--------------------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          313 RGNVIVTHLSPWAFYP--------------------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEEEEEEETTEEEE--------------------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             ceEEEEEEcCcccccc--------------------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            9999999861101111                    6777777776543         235566777777777664

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.34  E-value=5.4e-13  Score=139.98  Aligned_cols=70  Identities=34%  Similarity=0.619  Sum_probs=65.5

Q ss_pred             ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCccccccccc-----------CCCceecCcccccchhhhHH
Q psy5016          15 SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG-----------PDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus        15 ~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~tg~~~~~~~~~~~~   82 (485)
                      |+| ++++|+|++ |++++.|++|||+|+|+++|+|||++|++|+++|.           .++||+||            
T Consensus       399 p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG------------  465 (480)
T 3t5a_A          399 PRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG------------  465 (480)
T ss_dssp             CSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE------------
T ss_pred             ccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeecc------------
Confidence            999 999999987 79999999999999999999999999999999985           57899999            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeec
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGR  123 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR  123 (485)
                                               |+|+++ ||+++|+||
T Consensus       466 -------------------------Dlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          466 -------------------------DSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             -------------------------EEEEEE-TTEEEECC-
T ss_pred             -------------------------ceeeEE-CCEEEEeCC
Confidence                                     999997 999999998

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.16  E-value=9.4e-11  Score=98.08  Aligned_cols=60  Identities=22%  Similarity=0.349  Sum_probs=55.3

Q ss_pred             ecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCH
Q psy5016         412 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA  471 (485)
Q Consensus       412 GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~  471 (485)
                      .|.||||+++|.||+|.|||++|.+||+|.++++++++++..++.+.++|++.++...+.
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~   60 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY   60 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence            489999999999999999999999999999999999999999999999999988765554

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.04  E-value=4.2e-10  Score=94.09  Aligned_cols=63  Identities=21%  Similarity=0.293  Sum_probs=57.1

Q ss_pred             eccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEEcCCcCCCHHHH
Q psy5016         122 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYED  184 (485)
Q Consensus       122 gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  184 (485)
                      .|.|||||++|.||+|.|||++|.+||+|.++++++++++..++.+.++|++.++...+...+
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~   63 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRL   63 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchh
Confidence            389999999999999999999999999999999999999999999999999988766665443

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.80  E-value=9.7e-05  Score=78.98  Aligned_cols=89  Identities=12%  Similarity=0.020  Sum_probs=64.6

Q ss_pred             CCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEec----CCeEEEEecCCCeEEECcEeeCh
Q psy5016         352 TTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRE----DGYGQVVGRIKDMIIRGGENIYP  427 (485)
Q Consensus       352 ~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~----~G~l~i~GR~~d~I~~~G~~v~p  427 (485)
                      +..|+.+||+++..   +   |.|                 .|++||+++++.    ..++.|+||.+|+|++.|++|++
T Consensus       393 Ve~G~~YelViTt~---~---GL~-----------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~  449 (609)
T 4b2g_A          393 VEVGKEYELVITTY---A---GLY-----------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDE  449 (609)
T ss_dssp             CCTTCEEEEEEECT---T---SCC-----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred             cCCCCeEEEehhhh---h---hhh-----------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCH
Confidence            67899999999877   2   222                 699999999974    46799999999999999999999


Q ss_pred             HHHHHHHHc------CCC--ccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016         428 KEIEEFIQT------HPN--VLEAYAYGVPDERMGEEVGISIKLK  464 (485)
Q Consensus       428 ~eIE~~l~~------~~~--V~ea~vv~~~~~~~g~~~~a~vv~~  464 (485)
                      .+||++|.+      ..+  |.|-.++.-.. .....-+.|+.+.
T Consensus       450 ~~v~~av~~a~~~l~~~g~~l~eft~~~d~~-~~p~Hyv~~wEl~  493 (609)
T 4b2g_A          450 AELQKAVDNASKLLREVNTSVVEYTSFADTK-TIPGHYVIYWELL  493 (609)
T ss_dssp             HHHHHHHHHHHHGGGGTTEEEEEEEEEEECS-SSSCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhhhccCCeEEEEEEecCCC-CCCCcEEEEEEEe
Confidence            999999983      233  34555543222 2222445556664

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.68  E-value=0.00021  Score=76.11  Aligned_cols=104  Identities=7%  Similarity=-0.095  Sum_probs=71.1

Q ss_pred             CccccccccCCCCCC--CccCccccCccc-ccCCc-EEEE---cCC--------CCCCCCCceEEEEecCCCCccccccc
Q psy5016         311 RIDDVEYEFQEKMFK--DVKNYLITPALK-GLYHF-KKWM---NPK--------FSTTTRKVALTWPNSMDSEARIYHYK  375 (485)
Q Consensus       311 ~~i~~~YG~TEt~~~--~~~~~~~~s~G~-p~pg~-~v~I---d~~--------~~~~~g~~Gel~v~g~~~~~~~~gY~  375 (485)
                      ..+...|++||+.+.  ......+...+- .+|+. -.+.   |+.        .++..|+.+||+++..   +.   . 
T Consensus       325 p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l~eVe~G~~YelViTt~---~G---L-  397 (581)
T 4eql_A          325 PLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDLEDVKLGCTYEPVVTNF---AG---L-  397 (581)
T ss_dssp             CEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEEGGGCCTTCEEEEEEECS---SS---C-
T ss_pred             ccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEeCHHHcCCCceEEEEEeec---cc---e-
Confidence            334489999997432  222222222222 23333 2222   321        1256899999999987   21   1 


Q ss_pred             CcccccccccccCCCCCeEecCceEEEec----CCeEEEEecCCCeEEECcEeeChHHHHHHHHcC
Q psy5016         376 KYLREEENITVPDSAGRSIFEKDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  437 (485)
Q Consensus       376 ~~~~~~~~~~~~~~~g~~~~TGD~~~~d~----~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~  437 (485)
                              +        .|++||+.+...    ..++.|+||.+|+|++.|+++++.+||++|.+.
T Consensus       398 --------~--------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          398 --------Y--------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             --------C--------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred             --------e--------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence                    2        699999999975    457999999999999999999999999999853

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=97.50  E-value=0.00072  Score=71.96  Aligned_cols=89  Identities=7%  Similarity=-0.072  Sum_probs=65.3

Q ss_pred             CCCCCceEEEEecCCCCcccccccCcccccccccccCCCCCeEecCceEEEecC----CeEEEEecCCCeEEECcEeeCh
Q psy5016         352 TTTRKVALTWPNSMDSEARIYHYKKYLREEENITVPDSAGRSIFEKDQFVLRED----GYGQVVGRIKDMIIRGGENIYP  427 (485)
Q Consensus       352 ~~~g~~Gel~v~g~~~~~~~~gY~~~~~~~~~~~~~~~~g~~~~TGD~~~~d~~----G~l~i~GR~~d~I~~~G~~v~p  427 (485)
                      +..|+.+||+++..   +   |.         +        .|++||+.+...-    ..+.|+||.++++++.|+++++
T Consensus       388 ve~G~~YelviTt~---~---GL---------~--------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~  444 (581)
T 4epl_A          388 VKIGEEYEVVITNY---A---GL---------Y--------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTE  444 (581)
T ss_dssp             CCTTCEEEEEEEST---T---SC---------S--------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred             cCCCCeEEEEEeec---c---ce---------e--------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCH
Confidence            67899999999987   2   11         2        6999999999742    4699999999999999999999


Q ss_pred             HHHHHHHHc------CCC--ccEEEEEEEeCCCCCcEEEEEEEEc
Q psy5016         428 KEIEEFIQT------HPN--VLEAYAYGVPDERMGEEVGISIKLK  464 (485)
Q Consensus       428 ~eIE~~l~~------~~~--V~ea~vv~~~~~~~g~~~~a~vv~~  464 (485)
                      .+||++|.+      ..+  |.|-.+++... ....+-+.|+.+.
T Consensus       445 ~~v~~al~~a~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~  488 (581)
T 4epl_A          445 RDLQLSVESAAKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEIS  488 (581)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEES
T ss_pred             HHHHHHHHHHHHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeec
Confidence            999999974      233  45555554222 2223445566664

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=97.04  E-value=0.0003  Score=70.73  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=38.8

Q ss_pred             cCCcEEEEEcC-CCccCCCCCceEEEEEccc---cccccCCCcccccccccCCCceecC
Q psy5016          16 SSSFQAKVVDH-NNRIVPFGTPGELLIRGHC---NMLGYWEDEQKTKETIGPDRWLRTG   70 (485)
Q Consensus        16 ~~~~~~~i~d~-~~~~~~~g~~Gel~i~~~~---~~~gy~~~~~~~~~~~~~~~~~~tg   70 (485)
                      +|+++++|+|+ +|+++|.|++|||+|++..   .+.+|+..+..+.... .++|+.+|
T Consensus       292 ~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~-~~g~~~d~  349 (369)
T 3hgu_A          292 SPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPG-VSGFAGDR  349 (369)
T ss_dssp             TTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-STTCSSCE
T ss_pred             CCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccccccccCCceEEEecC-CCCCcCcc
Confidence            89999999998 8999999999999998732   2556665554443322 35555555

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=96.98  E-value=0.0017  Score=69.44  Aligned_cols=86  Identities=13%  Similarity=0.015  Sum_probs=54.9

Q ss_pred             cccccceEEEec----CccEEEeeccCceEEeCcEEeChHHHHHHHHcC------CC--cceEEEEEeeCCCCCceEEEE
Q psy5016         103 YSLVSDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH------PN--VLEAYAYGVPDERMGEEVGIS  170 (485)
Q Consensus       103 ~~~~~D~~~~~~----~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~------~~--v~~~~~~~~~~~~~~~~~~~~  170 (485)
                      .|++||+.+...    ...+.|+||.+++|++.|++|++.+||+++.+.      .+  |.|-.++.......+ .-.++
T Consensus       411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~-Hyv~~  489 (609)
T 4b2g_A          411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPG-HYVIY  489 (609)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSC-EEEEE
T ss_pred             heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCC-cEEEE
Confidence            344449999874    467899999999999999999999999999842      23  344444432222222 33445


Q ss_pred             EEEcC---CcCCCHHHHHHhhc
Q psy5016         171 IKLKE---NAKLNAYEDKSISS  189 (485)
Q Consensus       171 ~~~~~---~~~~~~~~l~~~l~  189 (485)
                      +.+..   ....+.+.+.++|.
T Consensus       490 wEl~~~~~~~~~~~~~l~~~~~  511 (609)
T 4b2g_A          490 WELLVKDSANSPSDELLGQCCL  511 (609)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHH
T ss_pred             EEEecccccCCCCHHHHHHHHH
Confidence            55542   12345566665543

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.70  E-value=0.0031  Score=67.19  Aligned_cols=49  Identities=10%  Similarity=0.125  Sum_probs=40.7

Q ss_pred             ccccccccceEEEec----CccEEEeeccCceEEeCcEEeChHHHHHHHHcCC
Q psy5016         100 GFFYSLVSDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  148 (485)
Q Consensus       100 ~~~~~~~~D~~~~~~----~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~  148 (485)
                      |+|.|++||+.+...    ...+.|+||.++++++.|+++++.+||+++.+..
T Consensus       396 GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~  448 (581)
T 4eql_A          396 GLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK  448 (581)
T ss_dssp             SCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred             ceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence            355555669999875    4578999999999999999999999999999543

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=96.48  E-value=0.012  Score=62.56  Aligned_cols=85  Identities=8%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             cccccccceEEEecC----ccEEEeeccCceEEeCcEEeChHHHHHHHHc------CCC--cceEEEEEeeCCCCCceEE
Q psy5016         101 FFYSLVSDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT------HPN--VLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus       101 ~~~~~~~D~~~~~~~----g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~------~~~--v~~~~~~~~~~~~~~~~~~  168 (485)
                      +|.|++||+.+...-    ..+.|+||.++++++.|+++++.+||+++..      ..+  |.|-.++.......+ .-.
T Consensus       404 L~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv  482 (581)
T 4epl_A          404 LYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYA  482 (581)
T ss_dssp             CSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEE
T ss_pred             eeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEE
Confidence            445555599988742    4689999999999999999999999999985      223  445555442222222 334


Q ss_pred             EEEEEcCCcCCCHHHHHHhh
Q psy5016         169 ISIKLKENAKLNAYEDKSIS  188 (485)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~l  188 (485)
                      +++.+..  ..+.+.+.++|
T Consensus       483 ~~wE~~~--~~~~~~l~~~~  500 (581)
T 4epl_A          483 IFWEISG--ETNEDVLQDCC  500 (581)
T ss_dssp             EEEEESS--CCCHHHHHHHH
T ss_pred             EEEeecC--CCCHHHHHHHH
Confidence            4556642  24555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	485
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-30
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	4e-22
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-28
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	6e-20
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-28
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-20
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	8e-26
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	7e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-23
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	7e-20
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-23
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-18
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-22
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-20

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  121 bits (305), Expect = 2e-30
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 38/166 (22%)

Query: 19  FQAKVVD-HNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           F+AKVVD    + +     GEL +RG   M GY  + + T   I  D WL +G       
Sbjct: 366 FEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG------- 418

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D     ED +  +V R+K +I   G  + P
Sbjct: 419 ------------------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 448

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYE 183
            E+E  +  HPN+ +A   G+PD+  GE     + L+    +   E
Sbjct: 449 AELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKE 494

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 96.9 bits (240), Expect = 4e-22
 Identities = 25/109 (22%), Positives = 45/109 (41%)

Query: 377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 436
           Y+   E           +   D     ED +  +V R+K +I   G  + P E+E  +  
Sbjct: 398 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 457

Query: 437 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 485
           HPN+ +A   G+PD+  GE     + L+    +   +I  +   +V+  
Sbjct: 458 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTA 506

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  116 bits (292), Expect = 1e-28
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%)

Query: 20  QAKVVDHNNRIVP--FGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSF 77
           + +V D   R VP      GE+ ++G     GY+ +E+ T+  + PD + RTG       
Sbjct: 358 RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG------- 410

Query: 78  LYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYP 137
                                         D  V  E+GY ++  R+KD+I  GGE I  
Sbjct: 411 ------------------------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISS 440

Query: 138 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
            ++E  +  HP V EA    +P  +  E     +  +       
Sbjct: 441 VDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE 484

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 90.3 bits (223), Expect = 6e-20
 Identities = 23/88 (26%), Positives = 38/88 (43%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E  
Sbjct: 411 DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP 470

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
              +  +       +      K   +K+
Sbjct: 471 LAVVVPRGEKPTPEELNEHLLKAGFAKW 498

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  116 bits (292), Expect = 2e-28
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 41/166 (24%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCN--MLGYWEDEQKTKETI--GPDRWLRTGRYKKT 75
           Q  +VD+        T G L+I           + D ++ ++T          +G     
Sbjct: 441 QPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG----- 495

Query: 76  SFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENI 135
                                           D     EDGY  + GR+ D++   G  +
Sbjct: 496 --------------------------------DGARRDEDGYYWITGRVDDVLNVSGHRL 523

Query: 136 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
              EIE  +  HP + EA   G+P    G+ +   + L    + + 
Sbjct: 524 GTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP 569

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 92.8 bits (230), Expect = 1e-20
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +
Sbjct: 496 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 555

Query: 458 GISIKLKENAKLNAD---DIRTFCKGKVSKF 485
              + L    + + +   ++R + + ++   
Sbjct: 556 YAYVTLNHGEEPSPELYAEVRNWVRKEIGPL 586

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  108 bits (269), Expect = 8e-26
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 31/163 (19%)

Query: 19  FQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFL 78
            Q  +VD N ++   G  GEL I G     GYW+  + T +    + ++   +  KT   
Sbjct: 339 TQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD- 397

Query: 79  YSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPK 138
                                         Q     DG  + +GRI + +   G  +  +
Sbjct: 398 ------------------------------QARWLSDGNIEYLGRIDNQVKIRGHRVELE 427

Query: 139 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA 181
           E+E  +  H  + E       D +    +      +++  L  
Sbjct: 428 EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQ 470

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 90.0 bits (222), Expect = 7e-20
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           DQ     DG  + +GRI + +   G  +  +E+E  +  H  + E       D +    +
Sbjct: 397 DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 456

Query: 458 GISIKLKENAKLNADDIRTFCKGKVSKF 485
                 +++  +  + +R F   ++  +
Sbjct: 457 CAYFVSEKH--IPLEQLRQFSSEELPTY 482

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  100 bits (250), Expect = 2e-23
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 37/158 (23%)

Query: 20  QAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLY 79
           +++V D ++R V  G  G LL RG   + GY++ E+    +   D + RTG         
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI------- 414

Query: 80  SAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE 139
                                           L  DGY  V GR KD I RGGE +  +E
Sbjct: 415 ------------------------------VRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444

Query: 140 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 177
           +E  +  HP V +A    +PD+ +GE   + I  ++ A
Sbjct: 445 VENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 90.1 bits (222), Expect = 7e-20
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 377 YLREEENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT 436
           Y + EE+     +        D   L  DGY  V GR KD I RGGE +  +E+E  +  
Sbjct: 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451

Query: 437 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV 482
           HP V +A    +PD+ +GE   + I  ++ A   A +++ F + + 
Sbjct: 452 HPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PKAAELKAFLRERG 496

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 3e-23
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 50/199 (25%)

Query: 20  QAKVVDHNNR--IVPFGTPGELLIRGHCN--MLGYWEDEQKTKETI--GPDRWLRTGRYK 73
            A V+D N    +      G L ++          W++  +  +T       +  TG   
Sbjct: 429 DAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG--- 485

Query: 74  KTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGE 133
                                             D     +DGY  ++GR+ D++   G 
Sbjct: 486 ----------------------------------DGAAKDKDGYIWILGRVDDVVNVSGH 511

Query: 134 NIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAYEDKSISSDYHE 193
            +   EIE  I   P V E    G  D+  G+ V   + LK  +  +   D        E
Sbjct: 512 RLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD-------E 564

Query: 194 FETMYDSIMAHPNRTTPYY 212
            + +   ++    +    +
Sbjct: 565 LQDIKKHLVFTVRKDIGPF 583

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.3 bits (210), Expect = 3e-18
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 11/128 (8%)

Query: 369 ARIYHYKKYLREEENITVPDSAGRSIFE-KDQFVLREDGYGQVVGRIKDMIIRGGENIYP 427
              +    +   +  +    +     +   D     +DGY  ++GR+ D++   G  +  
Sbjct: 456 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 515

Query: 428 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA----------DDIRTF 477
            EIE  I   P V E    G  D+  G+ V   + LK  +  +             +   
Sbjct: 516 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFT 575

Query: 478 CKGKVSKF 485
            +  +  F
Sbjct: 576 VRKDIGPF 583

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 97.8 bits (242), Expect = 2e-22
 Identities = 33/84 (39%), Positives = 48/84 (57%)

Query: 398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 457
           D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444

Query: 458 GISIKLKENAKLNADDIRTFCKGK 481
              +  +    L+AD + TFC+  
Sbjct: 445 TACVVPRLGETLSADALDTFCRSS 468

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 91.6 bits (226), Expect = 2e-20
 Identities = 47/182 (25%), Positives = 67/182 (36%), Gaps = 39/182 (21%)

Query: 1   MWDMNPTDLQFSTLSSSSFQAKVVDHNNRIVPFGTPGELLIRGHC-NMLGYWEDEQKTKE 59
           M              S     ++    + IV  G  GEL++       +GY    Q T E
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374

Query: 60  TIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQ 119
            +  D W RT                                     SD  V   +G  +
Sbjct: 375 KL-QDGWYRT-------------------------------------SDVAVWTPEGTVR 396

Query: 120 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 179
           ++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   +  +    L
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL 456

Query: 180 NA 181
           +A
Sbjct: 457 SA 458

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	485
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.97
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.96
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.93
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.91
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.91
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.9
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.88
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.85
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.8

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.7e-37  Score=336.03  Aligned_cols=258  Identities=12%  Similarity=0.065  Sum_probs=204.2

Q ss_pred             ccccCCcceeeccccccCCcEEEecccchhhHHHh-hhcccCCCcccccchh-hccchhhhH------------------
Q psy5016         224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAH-YNQKSDIDWEYADKCE-KSMQGWAKT------------------  283 (485)
Q Consensus       224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~-~~~~~~~~~~~~~~~~-pl~~~~~~~------------------  283 (485)
                      +..++-+.++|||||||.||.++++|......... ......++..+..++. |++|.++..                  
T Consensus       249 ~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~  328 (643)
T d1pg4a_         249 MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEG  328 (643)
T ss_dssp             EETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECS
T ss_pred             CCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecC
Confidence            34455677899999999999999999875544333 3333444422222222 555544332                  


Q ss_pred             ----------------------------h----------------h----hhccCCCCCHHHHHHHHhhhhhcccCcccc
Q psy5016         284 ----------------------------L----------------S----SEYNSYAGPVTLRRNLIDPLEIVQNRIDDV  315 (485)
Q Consensus       284 ----------------------------~----------------~----~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~  315 (485)
                                                  +                .    ..++|+++++++++++.+.++..+ ..+++
T Consensus       329 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~-~~i~~  407 (643)
T d1pg4a_         329 VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK-CPVVD  407 (643)
T ss_dssp             CTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTC-SCEEE
T ss_pred             CCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCC-ceEEE
Confidence                                        0                0    017899999999999999987433 34569


Q ss_pred             ccccCCCCC------CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc
Q psy5016         316 EYEFQEKMF------KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV  386 (485)
Q Consensus       316 ~YG~TEt~~------~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~  386 (485)
                      .||+||++.      ......+++++|+|++|++++| |+ +.++++|+.|||+|+|++| +++.||| +++.+.+.+ .
T Consensus       408 ~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p-~~~~~~~~~~~~~~~~~-~  485 (643)
T d1pg4a_         408 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWP-GQARTLFGDHERFEQTY-F  485 (643)
T ss_dssp             EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCT-TCCCEETTCHHHHHHHH-H
T ss_pred             eechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCC-cccccccCChhhchhhh-c
Confidence            999999642      1223456789999999999999 55 6779999999999999877 9999999 777666554 1


Q ss_pred             cCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCC
Q psy5016         387 PDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN  466 (485)
Q Consensus       387 ~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~  466 (485)
                      ...+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.||+||+++++..|+.++|||+++++
T Consensus       486 ~~~~g-~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~  564 (643)
T d1pg4a_         486 STFKN-MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG  564 (643)
T ss_dssp             SSSTT-SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred             ccCCC-eEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCC
Confidence            22467 99999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCH---HHHHHHHHhhCCCC
Q psy5016         467 AKLNA---DDIRTFCKGKVSKF  485 (485)
Q Consensus       467 ~~~~~---~~l~~~l~~~l~~y  485 (485)
                      ...+.   .+|+++|+++|++|
T Consensus       565 ~~~~~~~~~~i~~~~~~~L~~~  586 (643)
T d1pg4a_         565 EEPSPELYAEVRNWVRKEIGPL  586 (643)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGG
T ss_pred             CCCCHHHHHHHHHHHHhhCCcc
Confidence            77665   48999999999875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=8e-37  Score=322.82  Aligned_cols=247  Identities=16%  Similarity=0.121  Sum_probs=192.5

Q ss_pred             CcceeeccccccCCcEEEecccchhhHHHhhhccc---CCCcccccch-hhccchhhhHhh-------------------
Q psy5016         229 GFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKS---DIDWEYADKC-EKSMQGWAKTLS-------------------  285 (485)
Q Consensus       229 gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~---~~~~~~~~~~-~pl~~~~~~~~~-------------------  285 (485)
                      -+.++|||||||.||.++++|.+............   .+...+.... .|++|.++....                   
T Consensus       189 ~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (541)
T d1lcia_         189 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE  268 (541)
T ss_dssp             EEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHH
T ss_pred             eEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            35679999999999999999988766555444332   3332222222 277777665511                   


Q ss_pred             ----------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC-
Q psy5016         286 ----------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF-  324 (485)
Q Consensus       286 ----------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~-  324 (485)
                                                              .++||+++++.+.+++.+.++.   ..+++.||+||++. 
T Consensus       269 ~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~---~~~~~~YG~TE~~~~  345 (541)
T d1lcia_         269 LFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL---PGIRQGYGLTETTSA  345 (541)
T ss_dssp             HHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTC---SCCBCEECCGGGSSC
T ss_pred             hhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCC---ceeeecCCccccCce
Confidence                                                    1189999999999999998874   44579999999642 


Q ss_pred             ---CCccCccccCcccccCCcEEEE-cC--CCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeEecC
Q psy5016         325 ---KDVKNYLITPALKGLYHFKKWM-NP--KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSIFEK  397 (485)
Q Consensus       325 ---~~~~~~~~~s~G~p~pg~~v~I-d~--~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~~TG  397 (485)
                         .......++++|+|+|+++++| |+  +..+++|++|||+|+|+   +++.||+ +++.+...+   ..++ ||+||
T Consensus       346 ~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~~~~~~---~~~~-~~~TG  418 (541)
T d1lcia_         346 ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP---MIMSGYVNNPEATNALI---DKDG-WLHSG  418 (541)
T ss_dssp             SEECCCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEEST---TSCSEETTBHHHHHHHB---CTTS-CEEEE
T ss_pred             EEecCcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccC---ccCCeeCCChhhhhhcc---cCCc-cccCC
Confidence               3344567889999999999999 64  56689999999999999   9999999 666666655   4677 99999


Q ss_pred             ceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHHH
Q psy5016         398 DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF  477 (485)
Q Consensus       398 D~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~  477 (485)
                      |+|++|++|++++.||++|+||++|++|+|.|||++|.+||+|.||+|++++++..|+.++|+|+++++...+.++|.++
T Consensus       419 Dl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~  498 (541)
T d1lcia_         419 DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDY  498 (541)
T ss_dssp             EEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred             CeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999989999999999999888999999999


Q ss_pred             HHhhCCCC
Q psy5016         478 CKGKVSKF  485 (485)
Q Consensus       478 l~~~l~~y  485 (485)
                      |+++|++|
T Consensus       499 ~~~~l~~~  506 (541)
T d1lcia_         499 VASQVTTA  506 (541)
T ss_dssp             HHHHSCGG
T ss_pred             HHHhCCcc
Confidence            99998764

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-36  Score=326.50  Aligned_cols=258  Identities=14%  Similarity=0.033  Sum_probs=200.9

Q ss_pred             ccccCCcceeeccccccCCcEEEecccchhhHHHhhh-cccCCCcccccchh-hccchhhhHh-----------------
Q psy5016         224 VTHDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYN-QKSDIDWEYADKCE-KSMQGWAKTL-----------------  284 (485)
Q Consensus       224 l~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~-~~~~~~~~~~~~~~-pl~~~~~~~~-----------------  284 (485)
                      ....+.+.++|||||||.||+++++|.....+..... ....+...+...+. |++|.++...                 
T Consensus       236 ~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~  315 (640)
T d1ry2a_         236 VDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEG  315 (640)
T ss_dssp             EETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECS
T ss_pred             cccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecC
Confidence            4455678889999999999999999998666554433 23444423332222 6676655320                 


Q ss_pred             ---------------------------------------------h----hhccCCCCCHHHHHHHHhhhhhcccCcccc
Q psy5016         285 ---------------------------------------------S----SEYNSYAGPVTLRRNLIDPLEIVQNRIDDV  315 (485)
Q Consensus       285 ---------------------------------------------~----~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~  315 (485)
                                                                   .    ..++|+++++++++++.+.++... ..+++
T Consensus       316 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~-~~i~~  394 (640)
T d1ry2a_         316 TPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNE-IPIVD  394 (640)
T ss_dssp             CTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSS-SCEEE
T ss_pred             CCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCc-ceEEe
Confidence                                                         0    017999999999999999987533 34579


Q ss_pred             ccccCCCCC-------CCccCccccCcccccCCcEEEE-cCCC-C--CCCCCceEEEEecCCCCccccccc-Cccccccc
Q psy5016         316 EYEFQEKMF-------KDVKNYLITPALKGLYHFKKWM-NPKF-S--TTTRKVALTWPNSMDSEARIYHYK-KYLREEEN  383 (485)
Q Consensus       316 ~YG~TEt~~-------~~~~~~~~~s~G~p~pg~~v~I-d~~~-~--~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~  383 (485)
                      .||+||++.       ......+++++|+|+||++++| |+.. .  .+.+..|||++++++| +++.||| +++.+.+.
T Consensus       395 ~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p-~~~~gy~~~~e~t~~~  473 (640)
T d1ry2a_         395 TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWP-SFARTIWKNHDRYLDT  473 (640)
T ss_dssp             CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCT-TSCCEETTCHHHHHHH
T ss_pred             eecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCC-CcccccccCHHHHHhh
Confidence            999999743       2233457789999999999999 7532 2  3456679999999777 9999999 88888776


Q ss_pred             ccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEE
Q psy5016         384 ITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  463 (485)
Q Consensus       384 ~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~  463 (485)
                      | ..+.+| ||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+||+++++..|+.++|||++
T Consensus       474 ~-~~~~~g-w~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~  551 (640)
T d1ry2a_         474 Y-LNPYPG-YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL  551 (640)
T ss_dssp             H-TSSSTT-SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEE
T ss_pred             h-ccCCCC-eEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEE
Confidence            6 223467 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC----------HHHHHHHHHhhCCCC
Q psy5016         464 KENAKLN----------ADDIRTFCKGKVSKF  485 (485)
Q Consensus       464 ~~~~~~~----------~~~l~~~l~~~l~~y  485 (485)
                      +++...+          .++|.++|+++|++|
T Consensus       552 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~  583 (640)
T d1ry2a_         552 KNKSSWSTATDDELQDIKKHLVFTVRKDIGPF  583 (640)
T ss_dssp             C------------CCSHHHHHHHHHHHHTCTT
T ss_pred             cCCCCccccchHHHHHHHHHHHHHHHhhCCCC
Confidence            8765332          256888999999876

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-34  Score=306.47  Aligned_cols=249  Identities=15%  Similarity=0.079  Sum_probs=171.9

Q ss_pred             cccCCcceeeccccccCCcEEEecccchhhHHHhhhc--ccCCCcccccch-hhccchhhhHhh----------------
Q psy5016         225 THDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQ--KSDIDWEYADKC-EKSMQGWAKTLS----------------  285 (485)
Q Consensus       225 ~~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~--~~~~~~~~~~~~-~pl~~~~~~~~~----------------  285 (485)
                      .....+.++|||||||.||.+.++|............  .......+.... .|++|.++....                
T Consensus       167 ~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~  246 (534)
T d1v25a_         167 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR  246 (534)
T ss_dssp             CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTC
T ss_pred             ccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeecccc
Confidence            3344566899999999999999999987655543332  223331222221 166776555410                


Q ss_pred             --------------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCC
Q psy5016         286 --------------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQE  321 (485)
Q Consensus       286 --------------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TE  321 (485)
                                                                  .++||+++++++.+++.+. +    ..+++.||+||
T Consensus       247 ~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-~----~~i~~~yG~te  321 (534)
T d1v25a_         247 LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM-G----VEVRQGYGLTE  321 (534)
T ss_dssp             CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT-T----CEEEEEEECGG
T ss_pred             ccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh-C----Ceeeeeccccc
Confidence                                                        1189999999999888754 3    34579999999


Q ss_pred             CCCCCc---------------cCccccCcccccCCcEEEE-cC-CCCCCC--CCceEEEEecCCCCccccccc-Cccccc
Q psy5016         322 KMFKDV---------------KNYLITPALKGLYHFKKWM-NP-KFSTTT--RKVALTWPNSMDSEARIYHYK-KYLREE  381 (485)
Q Consensus       322 t~~~~~---------------~~~~~~s~G~p~pg~~v~I-d~-~~~~~~--g~~Gel~v~g~~~~~~~~gY~-~~~~~~  381 (485)
                      ++....               .....+++|+|+||++++| |+ +..++.  +++|||+|+|+   +++.||| +++.+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~t~  398 (534)
T d1v25a_         322 TSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGP---WITGGYYGNEEATR  398 (534)
T ss_dssp             GSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEEST---TSBSSCBTCHHHHH
T ss_pred             cccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCC---cccceecCChhhhh
Confidence            643110               0124578999999999999 65 455554  77999999999   9999999 888888


Q ss_pred             ccccccCCCCCeEecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEE
Q psy5016         382 ENITVPDSAGRSIFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  461 (485)
Q Consensus       382 ~~~~~~~~~g~~~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~v  461 (485)
                      ..|   ..+| ||+|||+|++|+||++++.||++|+||++|++|+|.|||++|.+||+|.||+|++++++..++.++|+|
T Consensus       399 ~~~---~~dg-~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~v  474 (534)
T d1v25a_         399 SAL---TPDG-FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVV  474 (534)
T ss_dssp             TTB---CTTS-CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC
T ss_pred             hhc---ccCC-CCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEE
Confidence            877   5788 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCHHHHHHHHHhhCCCC
Q psy5016         462 KLKENAKLNADDIRTFCKGKVSKF  485 (485)
Q Consensus       462 v~~~~~~~~~~~l~~~l~~~l~~y  485 (485)
                      +++.+.....+.+++.++++|++|
T Consensus       475 v~~~~~~~~~~~~~~~~~~~l~~~  498 (534)
T d1v25a_         475 VPRGEKPTPEELNEHLLKAGFAKW  498 (534)
T ss_dssp             -------------------CCCTT
T ss_pred             EeCCCCCCHHHHHHHHHHhcCCcC
Confidence            987654333333444577888876

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.4e-33  Score=294.61  Aligned_cols=247  Identities=10%  Similarity=0.012  Sum_probs=198.1

Q ss_pred             cCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHhh--------------------
Q psy5016         227 DNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTLS--------------------  285 (485)
Q Consensus       227 ~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~~--------------------  285 (485)
                      ...+.++|||||||.||.+.++|...................+...+. |++|.++....                    
T Consensus       166 ~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  245 (514)
T d1amua_         166 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTIND  245 (514)
T ss_dssp             TSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTC
T ss_pred             ccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccc
Confidence            444668999999999999999999988888887777777644433333 66666554410                    


Q ss_pred             ------------------------------------hhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCCC-----
Q psy5016         286 ------------------------------------SEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKMF-----  324 (485)
Q Consensus       286 ------------------------------------~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~~-----  324 (485)
                                                          ..++|+++++++.+++.+.+      .+++.||+||++.     
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~------~~~~~yG~tE~~~~~~~~  319 (514)
T d1amua_         246 FVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKV------TYINAYGPTETTICATTW  319 (514)
T ss_dssp             HHHHHHHHHHTTCCEEEECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTTTS------EEEEEECCGGGSSCSEEE
T ss_pred             hhhhhhhhhhhhcccccceeeecccccccccccccEEEEecccCCHHHhhhhccce------eEEEeeccccCceeeeec
Confidence                                                01899999999988877643      3468999999643     


Q ss_pred             --CCccCccccCcccccCCcEEEE-cC-CCCCCCCCceEEEEecCCCCccccccc-Ccccccccccc---cCCCCCeEec
Q psy5016         325 --KDVKNYLITPALKGLYHFKKWM-NP-KFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITV---PDSAGRSIFE  396 (485)
Q Consensus       325 --~~~~~~~~~s~G~p~pg~~v~I-d~-~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~---~~~~g~~~~T  396 (485)
                        ........++.|++.++..+.+ |+ +..++.|+.|||+|+|+   +++.||| +++.+.+.|..   .+.+| ||+|
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~---~~~~gY~~~~~~~~~~~~~~~~~~~~~-~~~T  395 (514)
T d1amua_         320 VATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGE---GLARGYWKRPELTSQKFVDNPFVPGEK-LYKT  395 (514)
T ss_dssp             ECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECSSSTTSE-EEEE
T ss_pred             cccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccC---cccccccccccccceeeEeccccCCCc-eEEE
Confidence              2223344568899999999999 65 56699999999999999   9999999 77777665521   23466 9999


Q ss_pred             CceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHHHH
Q psy5016         397 KDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRT  476 (485)
Q Consensus       397 GD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  476 (485)
                      ||+|++|+||+|+|+||++|+||++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++|+|+++++  .+.++|++
T Consensus       396 GD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~--~~~~~l~~  473 (514)
T d1amua_         396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQ  473 (514)
T ss_dssp             EEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--CCHHHHHH
T ss_pred             CCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC--CCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998765  57899999


Q ss_pred             HHHhhCCCC
Q psy5016         477 FCKGKVSKF  485 (485)
Q Consensus       477 ~l~~~l~~y  485 (485)
                      +|+++|++|
T Consensus       474 ~~~~~l~~~  482 (514)
T d1amua_         474 FSSEELPTY  482 (514)
T ss_dssp             HHHHHSCGG
T ss_pred             HHHhhCCcc
Confidence            999999875

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=1e-31  Score=282.68  Aligned_cols=248  Identities=15%  Similarity=0.173  Sum_probs=202.7

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCcccccchh-hccchhhhHh--------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEYADKCE-KSMQGWAKTL--------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~~~~~~--------------------  284 (485)
                      ..+-+.++|||||||.||.++++|.....+.........++..+...+. |++|.++...                    
T Consensus       181 ~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~  260 (536)
T d1mdba_         181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPS  260 (536)
T ss_dssp             TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSS
T ss_pred             ccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccCCCC
Confidence            3445678999999999999999999998888888777777744444333 6666666430                    


Q ss_pred             -----------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccCCCC
Q psy5016         285 -----------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQEKM  323 (485)
Q Consensus       285 -----------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~TEt~  323 (485)
                                                               ..++||+++++.+.+++.+.++    ......|+.+|.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  336 (536)
T d1mdba_         261 PDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG----CTLQQVFGMAEGL  336 (536)
T ss_dssp             HHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC----SEEEEEEECTTSC
T ss_pred             HHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccC----ceeeecccccccc
Confidence                                                     0018899999999999998887    3335778888843


Q ss_pred             -----CCCccCccccCcccccCCc-EEEE--cCCCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCeE
Q psy5016         324 -----FKDVKNYLITPALKGLYHF-KKWM--NPKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRSI  394 (485)
Q Consensus       324 -----~~~~~~~~~~s~G~p~pg~-~v~I--d~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~~  394 (485)
                           .........+++|+|+++. .+.+  +++..+++++.|||+++|+   .++.||+ +++.+...+   ..++ ||
T Consensus       337 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~---~~~~gY~~~~~~~~~~~---~~~~-~~  409 (536)
T d1mdba_         337 VNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGP---YTIRGYYKAEEHNAASF---TEDG-FY  409 (536)
T ss_dssp             EEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECT---TSCSSCTTCHHHHHHHB---CTTS-CE
T ss_pred             ccccccccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCC---ccccccccccccccccc---cccC-cc
Confidence                 2333445677999998655 5556  4467799999999999999   9999999 676666666   5677 99


Q ss_pred             ecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHHH
Q psy5016         395 FEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDI  474 (485)
Q Consensus       395 ~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l  474 (485)
                      +|||++++|+||+|+++||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++|||+++++ ..+.++|
T Consensus       410 ~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l  488 (536)
T d1mdba_         410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAEL  488 (536)
T ss_dssp             EEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHH
T ss_pred             ccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999889999999998764 5678899


Q ss_pred             HHHHHhh-CCCC
Q psy5016         475 RTFCKGK-VSKF  485 (485)
Q Consensus       475 ~~~l~~~-l~~y  485 (485)
                      +++|+++ |++|
T Consensus       489 ~~~l~~~~l~~~  500 (536)
T d1mdba_         489 KAFLRERGLAAY  500 (536)
T ss_dssp             HHHHHHTTCCGG
T ss_pred             HHHHHhcCCCcC
Confidence            9999986 8765

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.96  E-value=3.1e-29  Score=260.03  Aligned_cols=249  Identities=19%  Similarity=0.192  Sum_probs=192.4

Q ss_pred             ccCCcceeeccccccCCcEEEecccchhhHHHhhhcccCCCccc--ccc-hhhccchhhhHh------------------
Q psy5016         226 HDNGFPVDYNRALYSLKMSSLLPHNFSAEVEAHYNQKSDIDWEY--ADK-CEKSMQGWAKTL------------------  284 (485)
Q Consensus       226 ~~~gl~v~~tsgTtg~pK~vvls~~~~~~~~~~~~~~~~~~~~~--~~~-~~pl~~~~~~~~------------------  284 (485)
                      ......++|||||||.||.+.+++.....+..............  ... ..|++|.++...                  
T Consensus       152 ~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (503)
T d3cw9a1         152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEF  231 (503)
T ss_dssp             TTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSC
T ss_pred             hhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccccccc
Confidence            34456679999999999999999999888887766554433221  111 225555444330                  


Q ss_pred             --------------------------------------------hhhccCCCCCHHHHHHHHhhhhhcccCccccccccC
Q psy5016         285 --------------------------------------------SSEYNSYAGPVTLRRNLIDPLEIVQNRIDDVEYEFQ  320 (485)
Q Consensus       285 --------------------------------------------~~l~~g~~~~~~l~~~~~~~~~~~~~~~i~~~YG~T  320 (485)
                                                                  ..++||+++++++..++...++    ..+.+.||+|
T Consensus       232 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~----~~~~~~yg~~  307 (503)
T d3cw9a1         232 RPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP----GEKVNIYGTT  307 (503)
T ss_dssp             CHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCC----SEEEEEEEET
T ss_pred             ChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccc----cccccccccc
Confidence                                                        0118999999999999888876    4457999999


Q ss_pred             CCCC----CCccCccccCcccccCCcEEEE-c-CCCCCCCCCceEEEEecCCCCccccccc-CcccccccccccCCCCCe
Q psy5016         321 EKMF----KDVKNYLITPALKGLYHFKKWM-N-PKFSTTTRKVALTWPNSMDSEARIYHYK-KYLREEENITVPDSAGRS  393 (485)
Q Consensus       321 Et~~----~~~~~~~~~s~G~p~pg~~v~I-d-~~~~~~~g~~Gel~v~g~~~~~~~~gY~-~~~~~~~~~~~~~~~g~~  393 (485)
                      |++.    .........+.+.+.+.....+ + .+..++.|+.|++++.+..  ....+|+ +++.+.+.|    .+| |
T Consensus       308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~--~~~~~~~~~~~~t~~~~----~~g-~  380 (503)
T d3cw9a1         308 EAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD--SAFVGYLNQPQATAEKL----QDG-W  380 (503)
T ss_dssp             TTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCT--TSCCCBTTCHHHHHHHE----ETT-E
T ss_pred             ccceeeeeccccccccccccccccceeeeeecccCcccCCCccccccccccc--cccccccCChhhhHHHh----cCC-c
Confidence            9742    1222233334444444444444 3 3566889999999888762  5566677 777888777    578 9


Q ss_pred             EecCceEEEecCCeEEEEecCCCeEEECcEeeChHHHHHHHHcCCCccEEEEEEEeCCCCCcEEEEEEEEcCCCCCCHHH
Q psy5016         394 IFEKDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADD  473 (485)
Q Consensus       394 ~~TGD~~~~d~~G~l~i~GR~~d~I~~~G~~v~p~eIE~~l~~~~~V~ea~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~  473 (485)
                      |+|||+|++|+||+|+++||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++|||+++++...+.++
T Consensus       381 ~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~  460 (503)
T d3cw9a1         381 YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADA  460 (503)
T ss_dssp             EEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHH
T ss_pred             eecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999999999888899999


Q ss_pred             HHHHHH-hhCCCC
Q psy5016         474 IRTFCK-GKVSKF  485 (485)
Q Consensus       474 l~~~l~-~~l~~y  485 (485)
                      |.++++ ++|++|
T Consensus       461 l~~~~~~~~l~~~  473 (503)
T d3cw9a1         461 LDTFCRSSELADF  473 (503)
T ss_dssp             HHHHHHHSSSCGG
T ss_pred             HHHHHHhcCCCCC
Confidence            999995 578765

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.93  E-value=5.2e-26  Score=239.27  Aligned_cols=150  Identities=28%  Similarity=0.415  Sum_probs=133.9

Q ss_pred             CCcCcc--ccCCcEEEEEcCC-CccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHh
Q psy5016           9 LQFSTL--SSSSFQAKVVDHN-NRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIR   85 (485)
Q Consensus         9 ~~~~~~--~~~~~~~~i~d~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~   85 (485)
                      ...+++  |+|+++++|+|++ |++++.|++|||+|+|++++.|||++++.+...+..++||+||               
T Consensus       354 ~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TG---------------  418 (541)
T d1lcia_         354 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG---------------  418 (541)
T ss_dssp             --CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEE---------------
T ss_pred             CCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCC---------------
Confidence            345566  9999999999965 8999999999999999999999999999998888889999999               


Q ss_pred             hhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCc
Q psy5016          86 RKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  165 (485)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~  165 (485)
                                            |+++++++|+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..|+
T Consensus       419 ----------------------Dl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~  476 (541)
T d1lcia_         419 ----------------------DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE  476 (541)
T ss_dssp             ----------------------EEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred             ----------------------CeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCE
Confidence                                  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEcCCcCCCHHHHHHhhcccchhh
Q psy5016         166 EVGISIKLKENAKLNAYEDKSISSDYHEFE  195 (485)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  195 (485)
                      .++++|+++++...+.++|+++|+++...+
T Consensus       477 ~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~  506 (541)
T d1lcia_         477 LPAAVVVLEHGKTMTEKEIVDYVASQVTTA  506 (541)
T ss_dssp             EEEEEEEECTTCCCCHHHHHHHHHHHSCGG
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHhCCcc
Confidence            999999999988899999999998765443

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.91  E-value=5.9e-25  Score=238.09  Aligned_cols=165  Identities=21%  Similarity=0.243  Sum_probs=142.7

Q ss_pred             CCcCcc--ccCCcEEEEEcCCCccCCCCCceEEEEEc--cccccccCCCcccccccc--cCCCceecCcccccchhhhHH
Q psy5016           9 LQFSTL--SSSSFQAKVVDHNNRIVPFGTPGELLIRG--HCNMLGYWEDEQKTKETI--GPDRWLRTGRYKKTSFLYSAM   82 (485)
Q Consensus         9 ~~~~~~--~~~~~~~~i~d~~~~~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~--~~~~~~~tg~~~~~~~~~~~~   82 (485)
                      .+.+++  |+||++++|+|++|++++.|++|||+|+|  |+++.|||++++.+.+++  ..++||+||            
T Consensus       428 ~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TG------------  495 (643)
T d1pg4a_         428 LKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG------------  495 (643)
T ss_dssp             BCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEE------------
T ss_pred             CCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcC------------
Confidence            455666  99999999999999999999999999999  578999999998887765  347999999            


Q ss_pred             HHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCC
Q psy5016          83 AIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  162 (485)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~  162 (485)
                                               |++++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.||+|+|++++.
T Consensus       496 -------------------------Dl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~  550 (643)
T d1pg4a_         496 -------------------------DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAI  550 (643)
T ss_dssp             -------------------------EEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred             -------------------------CEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCC
Confidence                                     9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEEcCCcCCCHH---HHHHhhcccchhhHh------hhhhhcCCCCCCC
Q psy5016         163 MGEEVGISIKLKENAKLNAY---EDKSISSDYHEFETM------YDSIMAHPNRTTP  210 (485)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~------~~~I~~~~n~~l~  210 (485)
                      .|+.++++|+++++...+.+   +|+++|+++...+..      +++++++.++++.
T Consensus       551 ~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~  607 (643)
T d1pg4a_         551 KGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIM  607 (643)
T ss_dssp             TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBC
T ss_pred             CCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCcc
Confidence            99999999999998777753   788888876555433      3445555555443

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.9e-25  Score=233.93  Aligned_cols=159  Identities=25%  Similarity=0.353  Sum_probs=108.6

Q ss_pred             ccCCcEEEEEcCCCccCCC--CCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPF--GTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQ   92 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~   92 (485)
                      |+||++++|+|++|++++.  |++|||+|+|+.++.|||++++.|.+.+..|+||+||                      
T Consensus       353 p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TG----------------------  410 (534)
T d1v25a_         353 PIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG----------------------  410 (534)
T ss_dssp             ECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEE----------------------
T ss_pred             ccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccC----------------------
Confidence            9999999999999999887  6789999999999999999999999999999999999                      


Q ss_pred             hhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEE
Q psy5016          93 QQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  172 (485)
Q Consensus        93 ~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (485)
                                     |+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.||+|++++++..++.++++|+
T Consensus       411 ---------------Dlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv  475 (534)
T d1v25a_         411 ---------------DIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVV  475 (534)
T ss_dssp             ---------------EEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-
T ss_pred             ---------------ceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEE
Confidence                           99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCcCCCHHHHHHhhcccchhh------HhhhhhhcCCCCCCC
Q psy5016         173 LKENAKLNAYEDKSISSDYHEFE------TMYDSIMAHPNRTTP  210 (485)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~~~~~------~~~~~I~~~~n~~l~  210 (485)
                      ++.+.....+.++.+++++...+      ..+++++.+.++++.
T Consensus       476 ~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~  519 (534)
T d1v25a_         476 PRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFL  519 (534)
T ss_dssp             ------------------CCCTTTSCSBC--------------C
T ss_pred             eCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCcccc
Confidence            87654444344444455433222      234445555555443

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.90  E-value=2e-23  Score=218.37  Aligned_cols=157  Identities=21%  Similarity=0.261  Sum_probs=138.3

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEccccccccCCCccccccccc------CCCceecCcccccchhhhHHHHhhhc
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIG------PDRWLRTGRYKKTSFLYSAMAIRRKL   88 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~------~~~~~~tg~~~~~~~~~~~~~~~~~~   88 (485)
                      +++++.+.+.|+++++++.|++|||+|+||.+|.|||+++..+.+.|.      .++||+||                  
T Consensus       335 ~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TG------------------  396 (514)
T d1amua_         335 PIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG------------------  396 (514)
T ss_dssp             ECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEE------------------
T ss_pred             ceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEEC------------------
Confidence            899999999999999999999999999999999999999998888763      37899999                  


Q ss_pred             chhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEE
Q psy5016          89 KPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  168 (485)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~  168 (485)
                                         |+|++|+||+++++||+||+|+++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++
T Consensus       397 -------------------D~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~  457 (514)
T d1amua_         397 -------------------DQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC  457 (514)
T ss_dssp             -------------------EEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEE
T ss_pred             -------------------CEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEE
Confidence                               9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCcCCCHHHHHHhhcccchhhHh------hhhhhcCCCCCCC
Q psy5016         169 ISIKLKENAKLNAYEDKSISSDYHEFETM------YDSIMAHPNRTTP  210 (485)
Q Consensus       169 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~I~~~~n~~l~  210 (485)
                      ++|+++++  .+.++|+++++++...+..      +++|+.++++++.
T Consensus       458 a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~  503 (514)
T d1amua_         458 AYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKID  503 (514)
T ss_dssp             EEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBC
T ss_pred             EEEEcCCC--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChh
Confidence            99998775  5678899998876544433      3444555554443

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.8e-23  Score=225.74  Aligned_cols=165  Identities=19%  Similarity=0.213  Sum_probs=130.9

Q ss_pred             CcCcc--ccCCcEEEEEcCCCc--cCCCCCceEEEEEc--cccccccCCCccccccccc--CCCceecCcccccchhhhH
Q psy5016          10 QFSTL--SSSSFQAKVVDHNNR--IVPFGTPGELLIRG--HCNMLGYWEDEQKTKETIG--PDRWLRTGRYKKTSFLYSA   81 (485)
Q Consensus        10 ~~~~~--~~~~~~~~i~d~~~~--~~~~g~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~tg~~~~~~~~~~~   81 (485)
                      +.+++  |+|+++++|+|+++.  ..+.+..|||+|++  |+++.|||++++++.+.+.  .+|||+||           
T Consensus       417 ~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TG-----------  485 (640)
T d1ry2a_         417 KPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG-----------  485 (640)
T ss_dssp             CTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE-----------
T ss_pred             CCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcC-----------
Confidence            44555  999999999998753  33456679999998  6899999999999988874  45999999           


Q ss_pred             HHHhhhcchhhhhhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCC
Q psy5016          82 MAIRRKLKPLQQQQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  161 (485)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~  161 (485)
                                                |+|++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|+|++++
T Consensus       486 --------------------------Dlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~  539 (640)
T d1ry2a_         486 --------------------------DGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDD  539 (640)
T ss_dssp             --------------------------EEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred             --------------------------CceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECC
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEcCCcCCCH----------HHHHHhhcccchhhH------hhhhhhcCCCCCCCc
Q psy5016         162 RMGEEVGISIKLKENAKLNA----------YEDKSISSDYHEFET------MYDSIMAHPNRTTPY  211 (485)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~----------~~l~~~l~~~~~~~~------~~~~I~~~~n~~l~~  211 (485)
                      ..|+.++++|+++++...+.          ++|.++|+++...+.      .+++++++.++++..
T Consensus       540 ~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R  605 (640)
T d1ry2a_         540 LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMR  605 (640)
T ss_dssp             TTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCH
T ss_pred             CCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccH
Confidence            99999999999988754332          456666655443332      234455555555443

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=1.4e-21  Score=204.69  Aligned_cols=139  Identities=34%  Similarity=0.508  Sum_probs=128.8

Q ss_pred             ccC-CcEEEEEcCCCccCCCCCceEEEEEccccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSS-SFQAKVVDHNNRIVPFGTPGELLIRGHCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~-~~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      |++ +..+.+.+++|++++.|+.|||+++|+.++.|||+++..+...+..++||+||                       
T Consensus       356 p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tG-----------------------  412 (536)
T d1mdba_         356 PMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG-----------------------  412 (536)
T ss_dssp             ESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE-----------------------
T ss_pred             CCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccC-----------------------
Confidence            654 56777778889999999999999999999999999999999999999999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |++++++||+++++||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++++|++
T Consensus       413 --------------D~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~  478 (536)
T d1mdba_         413 --------------DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIP  478 (536)
T ss_dssp             --------------EEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             --------------ccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence                          999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCcCCCHHHHHHhhccc
Q psy5016         174 KENAKLNAYEDKSISSDY  191 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~  191 (485)
                      +++ ..+.++|+++|+++
T Consensus       479 ~~~-~~~~~~l~~~l~~~  495 (536)
T d1mdba_         479 RDE-APKAAELKAFLRER  495 (536)
T ss_dssp             SSS-CCCHHHHHHHHHHT
T ss_pred             CCC-CCCHHHHHHHHHhc
Confidence            765 56788899998765

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.80  E-value=9.5e-20  Score=187.87  Aligned_cols=138  Identities=33%  Similarity=0.519  Sum_probs=124.2

Q ss_pred             ccCCcEEEEEcCCCccCCCCCceEEEEEc-cccccccCCCcccccccccCCCceecCcccccchhhhHHHHhhhcchhhh
Q psy5016          15 SSSSFQAKVVDHNNRIVPFGTPGELLIRG-HCNMLGYWEDEQKTKETIGPDRWLRTGRYKKTSFLYSAMAIRRKLKPLQQ   93 (485)
Q Consensus        15 ~~~~~~~~i~d~~~~~~~~g~~Gel~i~~-~~~~~gy~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~   93 (485)
                      +.+.....+.+..++.++.|+.|++.+.+ +..+.+|++++..|++.+. |+||+||                       
T Consensus       329 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~-~g~~~Tg-----------------------  384 (503)
T d3cw9a1         329 FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTS-----------------------  384 (503)
T ss_dssp             TCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEE-----------------------
T ss_pred             cccceeeeeecccCcccCCCccccccccccccccccccCChhhhHHHhc-CCceecc-----------------------
Confidence            44455555567779999999999998876 4557789999999998884 8999999                       


Q ss_pred             hhhhhcccccccccceEEEecCccEEEeeccCceEEeCcEEeChHHHHHHHHcCCCcceEEEEEeeCCCCCceEEEEEEE
Q psy5016          94 QQQQQIGFFYSLVSDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  173 (485)
Q Consensus        94 ~~~~~~~~~~~~~~D~~~~~~~g~~~~~gR~~~~i~~~g~~~~~~~ie~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (485)
                                    |+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++++|++
T Consensus       385 --------------D~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~  450 (503)
T d3cw9a1         385 --------------DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP  450 (503)
T ss_dssp             --------------EEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             --------------cccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEe
Confidence                          999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCCCHHHHHHhhcc
Q psy5016         174 KENAKLNAYEDKSISSD  190 (485)
Q Consensus       174 ~~~~~~~~~~l~~~l~~  190 (485)
                      +++...+.++|++++++
T Consensus       451 ~~~~~~~~~~l~~~~~~  467 (503)
T d3cw9a1         451 RLGETLSADALDTFCRS  467 (503)
T ss_dssp             CTTCCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHh
Confidence            99888999999999853